LOCUS       DANLXK010000001        64973 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.001, whole genome shotgun sequence.
ACCESSION   DANLXK010000001 DANLXK010000000
VERSION     DANLXK010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 64973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 64973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..64973
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            165..1142
                     /gene="manX"
                     /locus_tag="PXD88_000001"
     CDS             165..1142
                     /gene="manX"
                     /locus_tag="PXD88_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL6279630.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            1154..1954
                     /locus_tag="PXD88_000002"
     CDS             1154..1954
                     /locus_tag="PXD88_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL6279631.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            1968..2804
                     /locus_tag="PXD88_000003"
     CDS             1968..2804
                     /locus_tag="PXD88_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL6279632.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            2897..3382
                     /locus_tag="PXD88_000004"
     CDS             2897..3382
                     /locus_tag="PXD88_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL6279633.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(3468..4259)
                     /gene="tpiA"
                     /locus_tag="PXD88_000005"
     CDS             complement(3468..4259)
                     /gene="tpiA"
                     /locus_tag="PXD88_000005"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL6279634.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            4419..5333
                     /locus_tag="PXD88_000006"
     CDS             4419..5333
                     /locus_tag="PXD88_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL6279635.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            5504..6292
                     /gene="surE"
                     /locus_tag="PXD88_000007"
     CDS             5504..6292
                     /gene="surE"
                     /locus_tag="PXD88_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL6279636.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            6279..6863
                     /locus_tag="PXD88_000008"
     CDS             6279..6863
                     /locus_tag="PXD88_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6279637.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAVVAYIIYTLMK"
     gene            6881..7381
                     /locus_tag="PXD88_000009"
     CDS             6881..7381
                     /locus_tag="PXD88_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL6279638.1"
                     /translation="MKKSLFVLSLISFALVGCSSNSGESTSAVETTEANATWQSADSI
                     QTAPMPASMNQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVR
                     DANNAPIYSQITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVG
                     QVLRVR"
     gene            7394..7594
                     /locus_tag="PXD88_000010"
     CDS             7394..7594
                     /locus_tag="PXD88_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279639.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            7613..8893
                     /locus_tag="PXD88_000011"
     CDS             7613..8893
                     /locus_tag="PXD88_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL6279640.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            9134..9325
                     /locus_tag="PXD88_000012"
     CDS             9134..9325
                     /locus_tag="PXD88_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279641.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            9318..9884
                     /locus_tag="PXD88_000013"
     CDS             9318..9884
                     /locus_tag="PXD88_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL6279642.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(9931..10161)
                     /gene="acpP"
                     /locus_tag="PXD88_000014"
     CDS             complement(9931..10161)
                     /gene="acpP"
                     /locus_tag="PXD88_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL6279643.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(10348..11025)
                     /gene="rpe"
                     /locus_tag="PXD88_000015"
     CDS             complement(10348..11025)
                     /gene="rpe"
                     /locus_tag="PXD88_000015"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL6279644.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
     gene            11219..11491
                     /locus_tag="PXD88_000016"
     CDS             11219..11491
                     /locus_tag="PXD88_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL6279645.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            11500..11625
                     /gene="ykgO"
                     /locus_tag="PXD88_000017"
     CDS             11500..11625
                     /gene="ykgO"
                     /locus_tag="PXD88_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL6279646.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
     gene            11805..12578
                     /locus_tag="PXD88_000018"
     CDS             11805..12578
                     /locus_tag="PXD88_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6279647.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            12661..13377
                     /locus_tag="PXD88_000019"
     CDS             12661..13377
                     /locus_tag="PXD88_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL6279648.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            13387..14139
                     /locus_tag="PXD88_000020"
     CDS             13387..14139
                     /locus_tag="PXD88_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL6279649.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(14355..14888)
                     /locus_tag="PXD88_000021"
     CDS             complement(14355..14888)
                     /locus_tag="PXD88_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL6279650.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(14994..15335)
                     /locus_tag="PXD88_000022"
     CDS             complement(14994..15335)
                     /locus_tag="PXD88_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL6279651.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(15359..16108)
                     /gene="trmB"
                     /locus_tag="PXD88_000023"
     CDS             complement(15359..16108)
                     /gene="trmB"
                     /locus_tag="PXD88_000023"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL6279652.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(16118..17068)
                     /locus_tag="PXD88_000024"
     CDS             complement(16118..17068)
                     /locus_tag="PXD88_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL6279653.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(17214..18233)
                     /gene="hemB"
                     /locus_tag="PXD88_000025"
     CDS             complement(17214..18233)
                     /gene="hemB"
                     /locus_tag="PXD88_000025"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL6279654.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(18314..19069)
                     /gene="tatC"
                     /locus_tag="PXD88_000026"
     CDS             complement(18314..19069)
                     /gene="tatC"
                     /locus_tag="PXD88_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL6279655.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(19056..19700)
                     /gene="tatB"
                     /locus_tag="PXD88_000027"
     CDS             complement(19056..19700)
                     /gene="tatB"
                     /locus_tag="PXD88_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL6279656.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(19704..19925)
                     /gene="tatA"
                     /locus_tag="PXD88_000028"
     CDS             complement(19704..19925)
                     /gene="tatA"
                     /locus_tag="PXD88_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL6279657.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(20036..21673)
                     /gene="ubiB"
                     /locus_tag="PXD88_000029"
     CDS             complement(20036..21673)
                     /gene="ubiB"
                     /locus_tag="PXD88_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL6279658.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(21747..22724)
                     /locus_tag="PXD88_000030"
     CDS             complement(21747..22724)
                     /locus_tag="PXD88_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6279659.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(22885..23532)
                     /locus_tag="PXD88_000031"
     CDS             complement(22885..23532)
                     /locus_tag="PXD88_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL6279660.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(23723..24475)
                     /gene="ubiE"
                     /locus_tag="PXD88_000032"
     CDS             complement(23723..24475)
                     /gene="ubiE"
                     /locus_tag="PXD88_000032"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL6279661.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            24820..25773
                     /gene="corA"
                     /locus_tag="PXD88_000033"
     CDS             24820..25773
                     /gene="corA"
                     /locus_tag="PXD88_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL6279662.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
     gene            25926..27731
                     /locus_tag="PXD88_000034"
     CDS             25926..27731
                     /locus_tag="PXD88_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL6279663.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQ
                     NNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAI
                     IYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALL
                     PLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAII
                     LISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEY
                     FYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADM
                     ANAREYITFSSQLYRPNSFSHQKIENKLCQKLLSQGYYFEGNILNIEYQYSETAQDCS
                     SITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHQLSITQQHKNEVLEKIKGDLLKM
                     DLGNSVLGLKHIELRFEDNIGYIVESISTQYIMLK"
     gene            complement(27774..30803)
                     /locus_tag="PXD88_000035"
     CDS             complement(27774..30803)
                     /locus_tag="PXD88_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL6279664.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLPLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            30981..31838
                     /gene="menB"
                     /locus_tag="PXD88_000036"
     CDS             30981..31838
                     /gene="menB"
                     /locus_tag="PXD88_000036"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL6279665.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            31921..34323
                     /gene="mrcB"
                     /locus_tag="PXD88_000037"
     CDS             31921..34323
                     /gene="mrcB"
                     /locus_tag="PXD88_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL6279666.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
     gene            34498..35004
                     /locus_tag="PXD88_000038"
     CDS             34498..35004
                     /locus_tag="PXD88_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL6279667.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            35063..35776
                     /locus_tag="PXD88_000039"
     CDS             35063..35776
                     /locus_tag="PXD88_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL6279668.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(35887..36891)
                     /locus_tag="PXD88_000040"
     CDS             complement(35887..36891)
                     /locus_tag="PXD88_000040"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL6279669.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(36979..37818)
                     /locus_tag="PXD88_000041"
     CDS             complement(36979..37818)
                     /locus_tag="PXD88_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL6279670.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            38008..39342
                     /locus_tag="PXD88_000042"
     CDS             38008..39342
                     /locus_tag="PXD88_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6279671.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(39422..39832)
                     /locus_tag="PXD88_000043"
     CDS             complement(39422..39832)
                     /locus_tag="PXD88_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL6279672.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(39955..40632)
                     /locus_tag="PXD88_000044"
     CDS             complement(39955..40632)
                     /locus_tag="PXD88_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL6279673.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            40750..41562
                     /locus_tag="PXD88_000045"
     CDS             40750..41562
                     /locus_tag="PXD88_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL6279674.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(41610..41879)
                     /locus_tag="PXD88_000046"
     CDS             complement(41610..41879)
                     /locus_tag="PXD88_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6279675.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(41852..42529)
                     /locus_tag="PXD88_000047"
     CDS             complement(41852..42529)
                     /locus_tag="PXD88_000047"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6279676.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(42631..42888)
                     /gene="rpmA"
                     /locus_tag="PXD88_000048"
     CDS             complement(42631..42888)
                     /gene="rpmA"
                     /locus_tag="PXD88_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL6279677.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(42909..43220)
                     /gene="rplU"
                     /locus_tag="PXD88_000049"
     CDS             complement(42909..43220)
                     /gene="rplU"
                     /locus_tag="PXD88_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL6279678.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            43498..44496
                     /gene="ispB"
                     /locus_tag="PXD88_000050"
     CDS             43498..44496
                     /gene="ispB"
                     /locus_tag="PXD88_000050"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL6279679.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            44599..45345
                     /locus_tag="PXD88_000051"
     CDS             44599..45345
                     /locus_tag="PXD88_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL6279680.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            45762..46697
                     /gene="fabD"
                     /locus_tag="PXD88_000052"
     CDS             45762..46697
                     /gene="fabD"
                     /locus_tag="PXD88_000052"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL6279681.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            46714..47178
                     /locus_tag="PXD88_000053"
     CDS             46714..47178
                     /locus_tag="PXD88_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279682.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            47199..47921
                     /gene="fabG"
                     /locus_tag="PXD88_000054"
     CDS             47199..47921
                     /gene="fabG"
                     /locus_tag="PXD88_000054"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL6279683.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            48040..49338
                     /gene="brnQ"
                     /locus_tag="PXD88_000055"
     CDS             48040..49338
                     /gene="brnQ"
                     /locus_tag="PXD88_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL6279684.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            49384..50208
                     /gene="mutM"
                     /locus_tag="PXD88_000056"
     CDS             49384..50208
                     /gene="mutM"
                     /locus_tag="PXD88_000056"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL6279685.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(50291..50725)
                     /gene="dtd"
                     /locus_tag="PXD88_000057"
     CDS             complement(50291..50725)
                     /gene="dtd"
                     /locus_tag="PXD88_000057"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL6279686.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(50700..51545)
                     /locus_tag="PXD88_000058"
     CDS             complement(50700..51545)
                     /locus_tag="PXD88_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL6279687.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(51547..52785)
                     /gene="proA"
                     /locus_tag="PXD88_000059"
     CDS             complement(51547..52785)
                     /gene="proA"
                     /locus_tag="PXD88_000059"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL6279688.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            53069..54952
                     /gene="mutL"
                     /locus_tag="PXD88_000060"
     CDS             53069..54952
                     /gene="mutL"
                     /locus_tag="PXD88_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL6279689.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(54971..55240)
                     /locus_tag="PXD88_000061"
     CDS             complement(54971..55240)
                     /locus_tag="PXD88_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL6279690.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(55227..55493)
                     /locus_tag="PXD88_000062"
     CDS             complement(55227..55493)
                     /locus_tag="PXD88_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL6279691.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
     gene            55933..56886
                     /gene="miaA"
                     /locus_tag="PXD88_000063"
     CDS             55933..56886
                     /gene="miaA"
                     /locus_tag="PXD88_000063"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL6279692.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
     gene            56955..57227
                     /gene="hfq"
                     /locus_tag="PXD88_000064"
     CDS             56955..57227
                     /gene="hfq"
                     /locus_tag="PXD88_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL6279693.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            57247..58632
                     /gene="hflX"
                     /locus_tag="PXD88_000065"
     CDS             57247..58632
                     /gene="hflX"
                     /locus_tag="PXD88_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL6279694.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(58854..64925)
                     /locus_tag="PXD88_000066"
     CDS             complement(58854..64925)
                     /locus_tag="PXD88_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6279695.1"
                     /translation="MNKIFKVIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAA
                     SILGGATLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDS
                     ITNPYNYFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNN
                     RKSRGKPKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMR
                     QSAAIADYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRR
                     SIYDGQNNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINP
                     DTAKVANNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNAS
                     KAWKSNAISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANV
                     SKANATAVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSG
                     IRAAALGYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSS
                     FAGDENVVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFN
                     ITADHSGLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKD
                     GSVGVKGADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDG
                     ESKTRIVYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFD
                     AGKNIMTQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSN
                     VTLTEDGLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVT
                     EVTTDAFGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGK
                     DGEPGKVGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDG
                     SIGLNGTNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVA
                     TLNDGLHFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLK
                     DLNSATFKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIV
                     NVKSGIDGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKG
                     FSIAADNGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGV
                     KGADGTVGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTR
                     IVYEKPDGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVV
                     NNNGALTVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQ
                     DGEISATSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIIT
                     KEGNNVTFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGS
                     IGATGKDGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPG
                     ENGKTRIVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDK
                     TASENFKSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPS
                     VTKGGIDAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKG
                     AQRVNNNGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNE
                     LNIAGSKNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALA
                     AGNLYHVTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAA
                     ASVGYQW"
BASE COUNT        18949 a        14067 c        13008 g        18949 t
ORIGIN      
        1 aaaatgttat aaagaaaaga catttagccc aatttatagc caaaaaagct tattgtctgt
       61 gatatagatc acacttttgt aattaataca ttgtgtgaaa taattatcat attaaaatct
      121 cgccccagta aataaacaac ttaaaaaacc gcaaggagta acaaatgagc attgctatta
      181 tcatagcaac ccatggtgtt gctgcagagc aacttctcaa aacaactgag atgttgattg
      241 gtgaacaaga agatgttgct tacattgact ttgttcccgg cgaaaatgca gaaacgatta
      301 tgggcaaata tcaagcattg gttgaaggtc cactatcaca ctgtgatcaa gtgctgtttt
      361 tggtggatat gtggggagga agcccattca acgccgcaaa ccgattccaa gatggaaaat
      421 cgggtatgga tgttgttgcg ggtgtgaata ttcctatgtt agtgaacacc tgtatggctc
      481 gtgatgatgt ggagtcgttg gaagaattgg tggaagtcgc attagaagcc ggctcaaccg
      541 ggattcgttc acttaatcac caacctgaag tggctgaggt gcaaaccgct actcctgcac
      601 aagaaactgc agctgttcaa cagcctgaaa ttgttgatga cggacgtcgt atgaccattg
      661 cccttgcccg tattgatgac cgcttgattc acggtcaagt tgcgacggtt tggacaaaag
      721 aaagtaaagt caatcgcatt attgtggtaa acgaaggtgt agcaaaagat agtgtacgaa
      781 ctactatgct aaaaagtgtt gctcctcttg gcgtaacggc tcacgttgtt gatgtaccta
      841 aaatgattcg tgtctataac aaccctgaat atgccgatga tcgtgtaatg ttactcttta
      901 ccaacccaag tgatgtctta gccttaattg aaggcggtgt accactcaat agcattaacg
      961 tgggcggtat ttcgcataaa gaagggaaac aaatggttag ccattctgtg gcggttgatc
     1021 aaaatgatat tgatgccttc aaagcaattg atgcgaaagg cgttgaatta gaagtacgca
     1081 aagtctcaag cgatagccgt cagtatatga tggatttatt gaaaaaacat aacttaatct
     1141 aaaggaaatt actatggaac tttcagcatt acaaattgtg cttttattcc tcgttgcctg
     1201 tatctcaggt atgggctcaa ttcttgatga atggcaaacc caccgtccgt taattgcctg
     1261 tacgatgata ggcttagtgc ttggtgatgt gactaccggc gttattgttg gtggctcatt
     1321 agagttatta gctttaggtt ggatgaacat cggtgccgct gttgcaccag atgcggcatt
     1381 agcctctatt gtctcaacca ttttagtcat tgtaggtcgt caagatattt caactggtat
     1441 cgccatcgct attccgcttg cagctgccgg tcaagtatta acctatgttg tgcgtgcaat
     1501 caccgtaggt ttccaacacg cagcagataa atcaattgaa gacggtaact taagccgttt
     1561 agactggtta catcgtggtg ctttattgct tcaagcaatg cgtattgcca ttccggcatt
     1621 aattgtggca ttaacagcag gtacagatgc ggttcaaaca atgttaaatg ccattcctga
     1681 agtggttaca accgggctga aaattgccgg tggcttcatc gccgtggtgg gttatgcgat
     1741 ggtgatcaat atgatgcgtg caggtcattt aatgccgttc ttcttcgcag gctttgtaat
     1801 tgcaggcttt accgatttca atcttgttgc ccttggggta ttaggtacgg ttattgcaat
     1861 ggtttatatc catatgcacc ctaaatataa caaaagccaa caggtagtgg tggcagctgc
     1921 accaaaaaat gatttagaca accgtttaga ctaagagggc atttaaaatg acaactgaaa
     1981 tcaaaaaagt aacaaaaagc gatttgaatg ccgttgtacg tcgttcaaac ttattccaag
     2041 gttcgtggaa ctttgagcgt atgcaggctc ttggttttgc gtatgcgatg gtaccggtta
     2101 tcaaacgttt atatccggat ccaaatggcc cgggtcgcaa agaagcaatt aaacgccatt
     2161 ctgagttctt taacacccag ccattcgtcg gtgcaccgat tttaggggta accattgcta
     2221 tggaagaaga acgtgccaac ggtaaagaaa tcgacaatgc cgcaattaac ggtattaaag
     2281 ttggtttaat gggaccatta gccggtgtgg gtgacccaat tttctgggga actgttcgcc
     2341 ctgtatttgc cgcattagga gcaggcttag ccttaaaagg tgagctttta ggcccaatcc
     2401 tgtttttcgc cttatttaac atagtgcgtt tagccgcacg ctattatggc gtagtgtatg
     2461 gctataaaaa agggttagat gttgtacaag atatgagcgg cggtttattg caaaaattaa
     2521 ccgaaggtgc ttcaatctta ggtctgttta ttatgggggc attggtacaa aaatggacga
     2581 gcattaacgt tccgcttgtg ctttcaacca ttcaaaaaca agacggtacc atcgaagtta
     2641 ccacagtgca aagcattctc gacagcttaa tgccgggcct actcccatta ttattaacct
     2701 ttgcttgtat gtggttactt cgtaatcgag taaatgctat ctggattatc ctcggtttct
     2761 ttgttatcgg tatcctcggc gctgcaaccg gtgcattagc ttaattgcaa aattttctgt
     2821 gaaaacgacc gcttgaactt gaacattcaa gcggtttttt atacgcttta gcccaaataa
     2881 attcacttgc ttaattatga ccaataccat ccttattctc tttattttac ttggcttagt
     2941 attcgccatt tatgaccaag tttttatgca caaactcaaa ggcacaacct tactggaaat
     3001 ccgtttaaaa aagcaaaaaa caattgatac ttggttattg attggtttaa tcgtcttgtc
     3061 aattagctat ggcgtacaaa atcaaatcca gccttttaca ctttacctgc tggcgacttg
     3121 cattattctg tcggtctatc tcgccttttt ccgttcccct cgcttgttgt taaaacagca
     3181 cggttttttc tttgcgaatg tcttttttaa ttacgacaag atttatcaag tcaatattgc
     3241 agaaggaaaa gcagacgaaa aaattttggt aattgattta catagcggaa gaaggctgct
     3301 tgcctatgtt gaaaatgcgg aagatcttca accggtagtg gatttttttg gcggttataa
     3361 aaaggaaagt gagcagaaat agtttgcgaa caaaacacaa gcggtcattt ttccctgaaa
     3421 ttttgcaaaa aactgaggaa aaatgaccgc ttgtaaaatc ggttaaatta ggctttagca
     3481 gccgctgccg ctttaacgat caccgcaaaa gcaggcgctt taagtgaaac accgcctact
     3541 aatgcaccgt caatatccgg ttgagtgaat aactctgctg cattggcatc gtttacagag
     3601 ccaccgtatt gaatgatcac ttggtcagcc actgcttgcg atttagctgc aatatggtca
     3661 cgaataaatt tatgcactgc ttgtgcttgt gccggagtcg ctgatttgcc ggtaccgatt
     3721 gcccaaattg gttcgtaagc aataactgca ccgttgaatg cttccacacc gtgcgcgttg
     3781 atgaccgcat caatttgtct tgcacacact tcttcagttt tacctgcttc attttcggct
     3841 tcagattcac cgatacataa tacaggcact aagccggcat cttttaatac tttgaatttt
     3901 tgagcaataa attcatcgct ttctttgtgg taagtacggc gttctgaatg cccgataata
     3961 atatattttg ccccaaactc ttttaacatt tcaggtgaaa tatcaccggt gaatgcccct
     4021 tttacgttca catcaacgtt ttgtgaacca agtgcgatta agcctttatc actgcaacca
     4081 cagccacaac cggcaagtga tgcttcagcg tgtgccaaat acatcaccgg tggagcgatt
     4141 gctacatcac agccttcaac gccatgtaat tctgctttta aatctgcaat taaggtttta
     4201 gtaaacgctt tatcaccgtt taatttccag ttacccatta caagtggacg acgtgccatt
     4261 ttgtttctcc tatatgaagt tgaacttaaa tataaacgtt gcaaactata ccaaatttta
     4321 atgtcgtttt gttgttttta ttttgctttt tctgatctag atcgaaaggt ttaacgtata
     4381 atgccgaaat cttatttttt atgttattcg agaagtgaat gaaactgaat tatttatact
     4441 ctcctcctca agctgttggg cgactaaaag ccgaatatgc agactttatt gtgcgtgaag
     4501 aactgggcta cgaactagcc ggcgaagggg aatttgtggc ggttaaaatc cgcaaaacca
     4561 acgccagcac gctgtttgtg ggggaaaagt tagccaaatt tgtcggtatt tccgagcgtg
     4621 aaatgagtta tgcaggctta aaggaccgcc acaaccgcaa aattcgtgtt ggttcgctcg
     4681 ccggcaatca ttttgaatta ttgctacgtg atgtagcaga aagcgaagag ttgatttacc
     4741 gtttgcaaca gttgcaagcg gtcggatttc ccaattattt taccgaacaa cgtttcgggc
     4801 gagacggaca taacctgact caagccttgc gttgggcaaa cggggaaatt agcgtgaaag
     4861 atcgcaaaaa acgcagtttc tacctttccg ctgcccgctc ggaagtgttt aatttagtgg
     4921 tttcacagcg gattaatgac tgcttaaccc aaaaaatctt ggagaatgat tacgttcaac
     4981 ttgccggctc taacagcttt ttctgcgtga aatcggacga aattgctgaa actcaagccc
     5041 gtttagcaca gcaagatcta cttctcaccg ctccgctgat aggcgaaaga tcgcttgaat
     5101 tagaatgcaa tcctgctgaa aaagccatca tagagcaaca cgctcaattg gttgccttaa
     5161 tgcaaaaaga gcgtatggca gccgctcggc gagcaatgct ttgtaagcca caaaatctgg
     5221 aatggcaatt tgaacaagaa gggctacggt taaaattctt tttagattca ggcagttatg
     5281 ccactgcact ggtgcgagag ttaattctgc ttaccgaaga gagcgaagct tagtccataa
     5341 cacataacaa gcggtaagat tttaatcatt ttttgcaatt tgcaaaactt taacaaaatc
     5401 ttaccgcttt ttgcactttt agactaaaaa aactgtcgaa aaattgttag aattgcgatc
     5461 tttgtattta gagtctatca agatgtaaga tctaaaggaa attatgcgaa ttttaattag
     5521 taatgacgat ggttttcacg ctgtcggcat tcaaacttta gccaaagcct tgcgagatgc
     5581 aggccatatc gtcaccatta ttgcaccgga tcgtaaccgc agtgcagctt caagctgcct
     5641 aaccttagta gatccacttc gggtgcatcg ttttgatgaa tataattatg cggtgatcgc
     5701 cggcacacct gccgattgcg tgcatttagc cttaaacggc ttgtttgacg gcaaatttgc
     5761 agaaaaattt gatttggtgg tctccggcat taatcacggg gcaaatttag gcgatgatgt
     5821 ggtttactcc ggtacggtag cggcagcatt ggaaggccgc cacttgccat taccaagtat
     5881 tgcagtatca ctggttgggc gtaaacactc ttcgttttta gacggtgaaa atcattttgg
     5941 aacggcagca caggtagtgt tagatttatt ggaaaaaatg gaaacgcaac gttttccatc
     6001 aaaccacgtt ctcaatgtta atgtgccgaa tttaccttat tcagagctaa aaggcacaat
     6061 gatcacccgc ttaggtgaac gttcacccgc tgcggaaatt gtgaagcaaa aagatcctcg
     6121 taatgctgat gtctattgga ttggtgtaac aggtgaacca ctggatgaaa gttttggtac
     6181 tgatttttat gcattaaacc gagattgcgt ttctatcaca ccaattcaag tggatatgac
     6241 cgctcataaa acgatagcaa ccttaaaagg catttttaat gaaactgttt gaaacaattt
     6301 atgacaaaac aatgcagtgg tctaagcacc gcttcgctgc cttttggttg agttttgtca
     6361 gttttatcga ggcgatcttt ttcccgattc cgccggatgt gatgttgatt ccgatgtcga
     6421 tggcaaaacc gcaaaatgcg tttaaatatg cagtttacac tacccttgct tcggttgccg
     6481 gtggtgttat tggttatttt attggcttat atgctaccga ttgggtgcaa ggcgtcatcg
     6541 caaattgggg aatgcaagca aactttgata aagcaaaatt gtggtttgaa acttggggtg
     6601 tcgcggtagt atttttagcc ggtttttcgc cgattcccta taaggtattt accatctgtg
     6661 ccggtgtaat gcagatggcg ttcttcccgt ttgtgattac tgctgcgatt tctcgctttg
     6721 cccgttttat tttggtagca aaactctctg cttggggtgg caaaaaatat gaacaaaaaa
     6781 ttcgccgctc aattgaatta attggttggg gaacaatcgt tttagccgtt gttgcctata
     6841 taatttatac attaatgaaa taaattttaa ggatataaaa atgaaaaaat cactttttgt
     6901 tttatctctg atttcttttg ctttagtggg ttgttcaagc aattcgggtg aatccacttc
     6961 tgcggtagaa acaacagaag caaatgcaac ttggcaatca gcagatagca ttcaaactgc
     7021 accaatgcct gcctcgatga atcaacctat tgccactcag ccaacctatc agcagccgac
     7081 ttactctgca ccacaaccaa tttcggcagc accagcacca atgcctgttt caagtggtag
     7141 tgatagctct caagttgaaa cagtagggaa ctgccaagtg gtgcgtgatg cgaataatgc
     7201 tcctatctat tcacaaatta ccaaaggctg ctacacagaa agtcactata cggtaggtaa
     7261 aagtgatacg ctttatttaa tcggttatct aaccggcacc aatgccaatc aaattgcgca
     7321 gctaaatggt ttaaataccg gctctccact gaaagtcggg caagtcttac gtgttcgtta
     7381 ataggcagag aaaatgaaca gaaccctttt agcatttgca atttcttgtg catttttgac
     7441 cgcttgtagc tcgcctactc agccacaagt tgaagatcca aatatgttac ctgcaggcac
     7501 attacaaccg attgaaggct caggcgcaag ccaagacagt tacagttggc cgtctgatat
     7561 tcaatcaacg tcaatgcctg acagtatgaa ataattttag gacaatcatt taatgaaaaa
     7621 acaatttatt cttctccctt tagtctctgc tgttttggca gcctgttctt caaacaatcc
     7681 agcaccggtg gtgaatgctt ccggtaataa cgaattaagc ccgggcgtga tgcagcctgt
     7741 tgatgtgagt gcaggtgcaa ttaattcaag cggtggctgg cagtctgata ttcaatctgc
     7801 accaatgcca agctcgatga ataccactcc ggtgcaaaca atgccccagc cggtttcagt
     7861 gccacaacct gtggcgactg taccgcagcc aattaccaat ccggtgatta ccgaacaacc
     7921 accacagccg acaaccacga ccaaaatcgt gaaaaaaacg aaaacggtcg agaaaaaagt
     7981 ggatcaaaat tttgagatcc cgcgtgatgc caacaatgcc ccaatgtaca accaaattca
     8041 aaaagggttc tacgatggct ctacctatac cgtacgcaaa ggcgacacaa tgtttttgat
     8101 tgcctatatt gtgggtaaag atgtaaaaga aatcgccgct cttaataata tgagcgaacc
     8161 ttaccaatta agcgtagggc aaaaactcaa aaccggcaaa tctgcaacgg aaactattac
     8221 cgtggaagaa aaagtcaccg taccggttga accacaaatt acctaccaac aaggtgcaaa
     8281 cggcacaacc tatgcttctg gcggtaatat tactgggccg gtaaaagcag gcacagccaa
     8341 cgctgatgtc acgccggtta ataacggtat taaagcaaca actgcaactg ctccggcagt
     8401 aactgcttct gtcggtacag taaatgcaac agaggaccgt accgcctcca ccattcgtgc
     8461 tatagatggc acagcaagtg gtgccgtaca aagtagtaat actgtttctg caccagcttc
     8521 atcaattaaa tggcaatggc caaccagcgg gcgtgtaatt tcaggcttct cctcagcaga
     8581 aggaggtaat aaaggcattg atattgccgg caataaagga caagatgtac gtgctgccgc
     8641 cgcaggtaaa gtggtatatg ccggtaatgc cttgcagggt tacggtaact taatcatcat
     8701 caaacatacc gatgatttct taagtgctta tgcacacaac aatactattg aagttgatga
     8761 gcaagaaacg gtgaaagccg gtcagaaaat cgcgacttta ggtagtacag gaaccaatac
     8821 gaataaatta cattttgaaa ttcgttacaa aggaaaatct gtcgatccgg ctcgttattt
     8881 accaagaaaa taagagtaac tttttagcat aatccgaccg cttgtgtact acaagcggtc
     8941 aatttttagg aaaattatgc aaatgaaaaa atatatcgca cacatgataa gttcgttact
     9001 gctgatagct tgttcggact accgagcaac accaactagc ccaagcgatg cttacacttg
     9061 ctctccttct tttcgctact ctttcttaaa aaaaacgtgc atacctttat tcagtatagc
     9121 cgacattcaa ttattggatc caaccgagcc ttcacatcgc atttatattt tgttatctga
     9181 agatcgattt caagccgaag tcttctcaac gaagctctct gaatcttcta tgttattgga
     9241 ggcggttaaa ggaggctata tttcaaaaga cggaaaagtt cgtttactca aaaaagctga
     9301 aggttggaaa atttactatg agtgagacta aaatacgttg tgattggtgt aaaagcagtg
     9361 aaatttatat gaaatatcac gacgaagaat ggggaaaacc ggagtttgac agcctcaaac
     9421 tgtttgagaa aatctgcctt gaagggcaac aagccggact ttcttggatt acggtgttga
     9481 aaaaacggga agcctaccgc caagcattcc atcagtttaa tcctgaaaaa attgccaaaa
     9541 tgggtgaaga agaaattgat ttgttaatgc aaaacactag cttaatccac caccgagcaa
     9601 agttagaagc cattataaaa aatgcgaaag cttatatcac aatgcagcaa aatggcgaag
     9661 acttcagtcg gtttatttgg tcttttgtga attatcagcc gcaaattaat gatgtaccaa
     9721 cacttgaagc tgttcctgct catacagaaa cctcaaaagc aatgtcaaaa gcgttgaaaa
     9781 aacgtgggtt tgtgtttgta ggcgagacta cttgctatgc ttttatgcag tcaatggggc
     9841 tggttaatga ccatttgaat aattgcgtgt tcaaacataa ataaacacaa aaaattaggc
     9901 gaccatttgg tcgcctaaca ttaattcaga ttattgattg ttttgaacgt aatcaattgc
     9961 tgattgaact gtagtaattt tttcagcttc ttcatctgga atttcgatat cgaattcttc
    10021 ttctaaagcc attactaatt caacagtgtc taaagaatct gcacctaaat cttcaatgaa
    10081 tgaagcttct ggttttacat cttctgcttt cgcgccaagt tgatcaacaa tgattttttt
    10141 tacgcgttct tcaatgctca ttttgttttt cctatagtga atatcgcata agtgcgagag
    10201 ttaaatagtg taatcgaaat aagtttaaat acaacctttt ataaaaaggt caaaccagac
    10261 tattcctata caccagaata tatctgtttt tccattctat cattatgttt gtgtttaatc
    10321 tatagagata aatcaaattt catttgatta ccctactttc cgtaattcat ctcgcatttg
    10381 tgcaatcact gcttgataat ctggctggtc aaaaatcgca gaacctgcca caaacatatc
    10441 tgctcctgcg gctgcaatgt cggcaatgtt atttattttc acaccaccat caacctctaa
    10501 gcgaatgtta taaccgctct catcaatacg acgacggact tctttcaatt tatctaaggt
    10561 ggacggaata aatgattgtc cgccaaagcc cggattcaca gacatcaata aaaccacgtc
    10621 aactttatcc atcacataat ctaaatagct caatggcgtt gccgggttaa acaccaagcc
    10681 tgatttacaa cctaaatcac ggataagctg taaatttcga tctatatgtt ccgttgcttc
    10741 agggtggaat gtaatataat ccgctccggc tttggcaaaa tccggaatca aacgctcaac
    10801 cggttttacc attaaatgca catcaatcgg gcattgaatg ccgtaatcac gtaaggcttt
    10861 gcagatcgcc ggcccgaagg tcaaattcgg cacgtagtgg ttgtccatta catcaaagtg
    10921 aattaagtct gcaccggctt ttaacacctc tgccacatca tcacccaagc gagctaaatc
    10981 ggcagataaa atagacggtg caattaaata aggattctta ctcatatttc ctcactatca
    11041 aaaaataaat ctacgttaga ttaccataat tttaacagcg aaaagagtct ctcttcctaa
    11101 aaatccgttt ttttacaaaa caccataaaa aagttatgga attgtattta aagttcgtat
    11161 attatgtatc ccatatttta attatggtta atgaccttat ctaaattctg gagaaaatat
    11221 gaaaaaaggg attcatcctg aaaattatcg tgaagtgttg ttctatgatg cctcagtgca
    11281 acaaggctgg gttatccgtt cttgtgcggc aaccaacaaa acaatggtat gggaagatgg
    11341 caaagaatac ccactttaca ccttagatac ctcatcggcg tctcaccctg tttacacagg
    11401 taaacgccgt gaagtgaata cagaaggtcg tgcaagtcaa tttaaagata gatttaaagg
    11461 ctttgcttca acgctttcaa atcaaaaata gaggataaaa tgaaaatctt aaactcactt
    11521 aaaaccgcaa aatcacgcca cccggattgc caaattgtca gacgcaaagg caaactttat
    11581 gtgatttgca aaaccaaccc gagatttaaa gctcgtcagc gttaaaaacc agcaccttaa
    11641 taagctaatt tattaaggtg ttttttattt catcttctca atattaccta ttttaaccac
    11701 atcaacgatt ttattatttc ttattccatt tagttatttg caagcggtca attttcccct
    11761 taaatttgca aaaaatttat tttaccaatt aaaaggaaat gattatgttg aaaaaattat
    11821 caattgctgc attagctctt accctttctg tttctgcatt tgctaaagag agcctacttg
    11881 agcgtataaa caacaaaggg actattactg tgggtacgga aggaacttat gccccttaca
    11941 cctatcacga tgcgagcggt aaattaaccg gttacgatgt agaagtaacc cgtgcggtgg
    12001 ctgaaaaatt agacgtaaaa gtggaattta aagagacaca atgggacgct atgttagccg
    12061 gtttaaaagg tgagcgtttt gacttagtgg caaaccaagt ggctttaacc agcccggaac
    12121 gtcgagcgac atttgataaa tccgaatctt acagctggga cggtgccgcc ttattagtgc
    12181 gtgaagatga aactaaaatc aaaacccctg ctgatgtaaa aggcgtgaaa actgcccaaa
    12241 ccttgagctc aaactatggc gagattgccc gtgaaaacgg tgcagacatc gtgccaattg
    12301 acggtatggc tcaaggctta ctgttaattc aacaaaaacg cgccgatgca actttcaata
    12361 gccacttatc gctattagat tacttgaaaa agaacccgaa ttccggctta aaaattgtgt
    12421 gggaaaaaga agaaaaagtg ggtgcaggct taattgcgaa taaaggcaat gacgaagcat
    12481 tagcgaaaat cagcaaagca atcgtagaat tacgtgaaga cggcacgtta aaaaaattgg
    12541 gcgagcagtt cttcggtaaa gatattagtg tacaataatc catattggat taggcttggg
    12601 gcgaattcgc cccttttatt tttaaatctc cctcaaaacg ggagatttta ggtttttcag
    12661 atgttaaacg atctacttct ctcaatcccc tttatgaccc aagctcgggt cgatttagtg
    12721 ctaagcggtt tttggccgat ggtacaagcg gcatttttag tctctattcc gctggcaatc
    12781 gcctcattta ttatcggtat gttaattgcc gttgcagttg cattagtgcg aattagccct
    12841 gcaacaggct tttttcaccg cttgctactg tggctggtaa aaggttatat ctcgattatt
    12901 cgcggcacgc cgatgttggt tcagatctgt attgtgtttt atggtttgcc tgcaatcggc
    12961 atttttatcg atccgattcc ggcggcaatt atcgggtttt cactcaatat cggggcttat
    13021 ggctcggaaa cgatccgtgc tgcgatctcc tccgtgccaa aaggacaatg ggaagccggt
    13081 tatactatcg gtatgactta tatgcaaact tttcgccgta tcattgcccc gcaagcgttt
    13141 cgagttgctg ttccgccact tagcaacacc tttatcggtc tgtttaaaga tacctctctt
    13201 gcctccgttg ttaccgtaac cgaaatgttc cgggttgctc aacaggtagc aaatatgtct
    13261 tatgacttcc tacctgttta tattgaagcc ggtttgattt attggtgctt ctgctgggtg
    13321 ctatttttaa ttcaggcgag attggaagtc cgctttaacc gatttgtggc gaaataagga
    13381 ggaattgtgc ttaaaattcg caatattcat aaaacctttg gcaacaacgc tattctacgc
    13441 ggcattgatt tagatattca aaaagggcaa gtggtagtaa ttttaggccc ttccggttca
    13501 ggcaaaacca cctttcttcg ttgcttaaat gcactggaaa tgcccgagca aggcacattg
    13561 gaatttagtg gtaatgctcc gctgaaaatt gattttgccg taaaacagag caaaaaagag
    13621 attttagcgc tacgccgcaa atccggtatg gtgttccaaa actacaacct gttcccgcat
    13681 aaaaccgcat tggaaaatgt gatggaagga ccggtatttg tgcaacaaca agcggtcgaa
    13741 attgctcaaa aaaatgcaaa agccctgtta gaaaaagtcg gactggcgga taaagcagaa
    13801 ctctacccgt ttcaactgtc aggcgggcaa cagcaacggg ttggcattgc acgagcatta
    13861 gcaattcagc cggagctgat gttatttgat gaaccaactt cggcacttga tcctgagtta
    13921 gtgcaagacg tgctaaatac gatgaaagaa ctggcaaatg aaggctggac aatggtcgtg
    13981 gttactcacg aaatcaaatt tgcccttgat gttgccgatg tagtggtggt aatggacggc
    14041 ggtgaaatcg ttgaacaagg ctcgccacag caactgttta accacccaca acacgaacga
    14101 actaaacgtt ttttaaatca aatcagagcg gataaataag aaacgatagc gctagcgtcc
    14161 acgctagtgc tatctaataa atggtacaag cggttaatta tgtataaatt gttatactgt
    14221 tttggcacga gcgtggacgc tcgcgccatc gtacagtaaa atcagctaac aaggttcccc
    14281 ataaaggata aataagacaa ggctccttaa tcttttagat taaggagctt atttttagat
    14341 tttagaaatc cgatttaagc cgcagcccat agtccaccaa aaatttggta gaacaagcta
    14401 tttagtagca ataagccgaa acctagcacc attaccgaga aatctaacat tcccgttctt
    14461 ggcaggagct tgcggataaa acctaacacc ggttcggtaa tttgtgctac cgtgtagtct
    14521 aatgggtggt tgccttgagt gacccagctc attaatgcac gaatcaaggt ggtgaaaaat
    14581 agaatttgtc cgaaggtttt gaccacactt aataagccga ttaatactgc tctgggtaaa
    14641 tctacgccaa acagaataaa ctgtaacgtt accaaagcgg cggcaattaa tagtgccgga
    14701 aagcaaatat ttttaacggt tggaatcagc ttgccaaccg gtgaaaccat cggttcggta
    14761 attttaagta aggtttgtga aatcggtaaa cgaggatcaa cccgacaaaa ttgcagccaa
    14821 gttcttagca ccagcacaaa acttaaaaag ccaacaataa gcgaaataac aggagctaaa
    14881 aattccatct ctttttctct ttctatacaa aacaagcggt cgttttttag aaaaaatttg
    14941 caaattttca gtaaaatctg accgcttgta tcttattaaa ttaactaggc aaattaagct
    15001 tgtgctgggt agtcccacca aatatcaaat aattcgctca cttgaacctc ttttaagccg
    15061 ttagtttcta accaagtttt cactaattgg cggtgagatt catcacattt gcctaatttt
    15121 tctaagcaga ctaaaccttc ccagtttaag tagccgttcg cttcaagggc taaaccgttt
    15181 ggtcgaatca cttcatcgat aaaacgatct acggtttcat caatttggtc aatgcctgtg
    15241 ccttcagcaa aggtgaattt aattaagaaa cctaattctt ggtattcacc taagtgcatt
    15301 tttttacgtt ggcgtgcgtt acgttgaata gccatttttt ctctcctcta tgaataaatc
    15361 atttctttgt aaaatataaa tcccacaccc cgtgtcctaa acgatgccct cgctcttcaa
    15421 atttggttag cgggcggaaa ttcggacgtg gaataaaatc attagttgct gatgtatttt
    15481 gcaactcgct ctcaaattgg cgtaatactt caagcatatg ttctgcgtaa ttttcccagt
    15541 cggtggcaaa atgaataaag ccgttagggc ttaattttct gatcacacgg ctgataaatt
    15601 caggctgcac aatacggcgt ttgtggtgtt ttgctttttg ccaagggtct gggaagtaaa
    15661 gctgtaagcc acctaatgta ccgtcagcaa tgctgtctcg caaaatttcg gtggcatcgt
    15721 ggcaaattac tcttaaattc ttcacgcctt tttctaacgc ataagcgata caagccccca
    15781 ccccgggcgt gtgcacctca atgccgatat agttgcgatt cgggttttgc tctgccattt
    15841 ccaccagcga ttttcccatt ccgaagccga tttctaacac taccgggttg ttattgccga
    15901 aaatctgctc aaaattaaag ggcattggct ggtaatctaa gcctaaattt gcccagttgt
    15961 tgttcatcat atcacgttga taatcgctca aacgaccggt acgcaataca aaactccgca
    16021 cttttcgtaa ataacgccca tcttcggtaa actcggcttg ctcaacggtt ttacgttttt
    16081 tatctgcaaa agtctgtttt tctgacattt tcttgcctta aaacttcact aataccgaac
    16141 cccaagtcca gccaccgccg aatgcttcaa ggagtagtaa ttgcccacgt tgaattcgcc
    16201 cgtcacgcac cgcttcatct aatgccaccg gcactgttgc tccactggta ttggcatatt
    16261 tatcaagggt aaccaccact tgatccattt ccatctctaa ttttttcgcc gttgcggtga
    16321 taatgcgtaa attcgcttgg tgcggaatca gccaatctaa atcggatttt tgtagattat
    16381 tcgcttctaa ggtttcttct accacgcttg aaagttggtt tactgcaatt ttaaaggtgg
    16441 cattgccctg catttcaata aagccggaac gctcttcgcc acgcttttgg cttcttaagg
    16501 ttaagttatt ttctaaatcc ggtgaggcgt gcaagtgggt tgaaataata cccagctctt
    16561 cactcgcctc taaaatcacc gccccagctc cgtcaccaaa taatactact gtgctgcggt
    16621 cggtttcgtc taacattctg gaattgatgt ctgaaccaat aaccaatgcc tttttcactt
    16681 gcccgttacg cacgaattga tcggcaacag ttaaagcata cacaaatcct gtacaagccg
    16741 ctgccacatc aaaagcaatc gcgtcttcaa tctgaagcaa gccttgaatt tggcaagctg
    16801 cacttgggta agcgtgggag ttggtagttg ttcccaccac aattaaatca atgtcatttg
    16861 cctcaattcc tgccatttcc agtgcttgtt gagcggcttt tgcccccatt gttgccactg
    16921 tttcgtcagg ctcggcaata cggcgttcac gaatgccgga acgggttacg atccattcat
    16981 cagaggtatc gaccattttt tctaaatcag cattggtacg cacctttgtc ggtaaatagc
    17041 ttcccgttgc taaaattcta ctattcatat ttttattatt ctcaatcaat taaatgataa
    17101 tccgttatta tagcttgaaa accaacaaat atataggctt tacaagcggt catttttagc
    17161 aaaaaagttg cattcacgaa cgattttgca ctagaaccac cgcttgctag tatttatttc
    17221 gcttgagcct cttcgtatag ccacttcgct actcgcttgg cgaaataagt tagaataccg
    17281 tctgctcctg cccgtttaaa gcagagtaat ccctccataa tgcactcacg ctctttcagc
    17341 cagccgtttt ggattgccgc catatgcatc gcgtattcgc ccgaaacttg gtaggcgaag
    17401 gttggcacgc caaaattctc tttcacacgc cacaccatat ccaaataagg catacccggt
    17461 ttcaccatca ccatatctgc cccttcttga atatccatcg ccacttcgtg caagccttcg
    17521 ttgccgttag ccggatcgac ttggtaagtg tatttattac cgccttttaa gttgccggca
    17581 gaacctactg catcacggaa cggtccgtaa taattagacg catatttagc cgaatacgcc
    17641 ataatttgcg tattgataaa accgttttgc tcaagggctt cacgaatttt gccgattcga
    17701 ccgtccatca tatcgctcgg ggcaacaata tccgcccccg cttctgcgtg cgataacgcc
    17761 tgttttacca atacttcagt agtcacatca ttcagtacat agcctgtttc atcaataatg
    17821 ccgtcttgtc cgtgcgtggt aaacgggtct aacgccacat cagtaatcac gcctaattcc
    17881 ggaaattgag cttttaaagc tcgcacggca cgctgtgcca acccttgcgg gttataggcc
    17941 tcttctgcca tcagtgattt tttcacatca cccaccacag ggaaaagagc caccgcaggc
    18001 acgccatatt taaccagttc tgcggcttca actaaaagct ggtcgatagt taaacgctct
    18061 acacccggca tagaaggcac ttgtactcgc tgattttccc cttcgatgac aaaaacaggg
    18121 taaatcaaat cattaacggt aagttgattt tctgccacta agcggcggct gaaatcgtgc
    18181 ttgcgtaaac gacgcatacg gcgtaaagga tattgggatt gaattacttg catttttaat
    18241 ttcctaattc ttaaaatacc tattcttgaa ataagaaagg catagcaaac aggtgctatg
    18301 ccttttcaaa atattactgt gcaacctgct ctgatggttc atcatcatct ttggggcgat
    18361 aaaaccgagc aaatagcaca ccaacttcaa acaataaaca cattggaatt gccaataatg
    18421 tttgcgagaa aatatctggt ggggtgagca acataccaat tacaaatgct gccacaataa
    18481 tataagggcg ttttgccttt aaatcttcgg gtgtggttac gcctgcccaa cataacaaga
    18541 taatcgcaac cggcacttca aagcagatcc cgaatgccat aaaaatggtt aaaacgaaat
    18601 caagatagct actaatatcc gttgccattg ttaccccttc cggagcggta gaggttaaaa
    18661 agccaaatac aagcggaaat acaacataat aggcaaaagc gacaccacaa taaaacagca
    18721 atgtgctaga taccaataat gggtaaacca aacgcttttc ctgcttgtat aaagcagggg
    18781 cgacaaacgc ccaaatttgg tacaaaataa aaggaactga taaaaacacc gaaaccacaa
    18841 tggttaattt aattggggta aaaaacggag tggctacatt ggttgcaatc attgttgcac
    18901 cgtctggtaa attgtccgtt aaaggtgttg ccaataaggt gtaaatatca ttggcccagt
    18961 aaaccaatcc gcaaaacacc aagagcacac agataaaact acgcagtaat cggtttctca
    19021 gctcaattaa atgtgtaatc agaggttgag actcatcaac ttgcgacatt atttgcctcc
    19081 gatttctgcg ctgattctga tgattgaggc gtagctaaat catcatctgg cggatagtaa
    19141 gattccaacg ttaaaagcga ttcgtccatt tctgcttgtt cagccagctc atcagccgaa
    19201 agtggctttt ctgtccgcgt aacattaagt tgctcagata aactatccac ttcaagcggt
    19261 ttattttgcg catttttttg caattcttgc gcctctaaca cctggctttc ttgctcgatt
    19321 ttttgctgaa tttctgcgac ttgctcatcg gttaatttag gaattgtgct gctttccgca
    19381 gccgtttttt ccaactcatt ttttgcagaa ttaagcgaat cttgcaactg ggtggctgac
    19441 attttcagat cttccaccgt tttatttaat tctggcgaaa gggagcttaa attcaactct
    19501 tctgcctttt taatgctctc ttttaattct tgcagtttca gctcttgagc cagttcattt
    19561 tgtacgtttg cggctaaacc tcgaattgta ctcacccagc ccattacggt acgaatcgca
    19621 atcggcatac gtttcgggcc tagcaccacc aagcccacaa tcataatcag tactaattca
    19681 gaaaaaccta tatcaaacac ggattaagcc tgctctttct cttttgcttt ctgctctgct
    19741 gaaattgcat cttttgcttc cactttttca aattcagcat cttttttctc atctgccatt
    19801 gcttttttga agccttttac agattcgccc aaatccgaac ctaaagtacg taatttcttc
    19861 gtaccgaaaa gtaatacgat gattgcaacc acaatcagaa gctgccaaat actaataccg
    19921 cccataaaaa ctcctttcat ttaataggga atagataaaa taaaacgctg tttattatat
    19981 gttactttga catataaaaa agtaattttg caaaaaattt gtcaaaaaca accgcttatt
    20041 tgcgttgact caaaatcaat accagtggaa ataaagttaa taacggcaca cttagccata
    20101 tcggcaaaga ttcaaatttc caaaatgcgc cacagatcac aatcgctgaa attgacagca
    20161 caagaaaacg gctatttgcg tttgaattct gtgcttttaa actttcgtta atttccgcta
    20221 aacggaaatt aatttgcttt tgctcttgta aggctttaaa caatgcctcc ggaaactccg
    20281 caaaatgctc ccgatattgc ggtaaacgtt gcttaatgtc tcgaaccatc gctttcacac
    20341 ctacctgctc attcagccag ttttgtaaaa acggttttgc ggtttgccat aaatccaact
    20401 gtggataaac ctgcctgccc aaaccttcaa tataaagaag tgttttttgc aacaacacca
    20461 actgcggctg cacttccata ttaaattctc ttgccacatt aaacaggttg agcaaaacgt
    20521 gtccgaatga aatttccgat aacggcttag caaaaatcgg ctcacatacc tcacgaaagg
    20581 cttgctcaaa tttatcaata tcggtatccg gcggcgtcca gcccgattcc acgtgcatta
    20641 aggcaacacg gcggtaatct cggttgaaaa atgcgacaaa actttcggct aaatagcgtt
    20701 tgtcattgtg gttcaacgtg ccgacaatcc cgcagtcaat gccgatatat tgcggatttt
    20761 ccgggtgttc tctgttcaca aaaatattgc cggcgtgcat atcggcgtgg aaaaaactgt
    20821 cacggaatac ttgggtaaaa aatacctgca caccacgctc tgccagcaat ttcatatcgg
    20881 tgctgttcgc ttccaactcg gcaatgttag acactggaat gccataaatc cgctccatcg
    20941 caatcaagtt tttatggcaa aaatcttgat acatttcagg cacatacagc atttcgctat
    21001 tttcaaaatt cgcccgaagc cgaatggcat tgtgcatttc tttgcgtaaa tccagctcgt
    21061 ctaaaatagt tttttcgtac tctcgcacca cttcaaccgc ccgtagccgt ttgccgtcat
    21121 tcgataattt cgggataaag tgagcaattt catacatcaa ctctaaatcc gccttaatca
    21181 ccggctcaat gcccgggcga atcactttta acaccacatc tttgcctgca agcggttgat
    21241 tttggttaaa ttttgccgtg tgaacctgtg caatcgaagc agaagctaag gcagtttcat
    21301 caaagttttc aaaccaagtt tcaagctttc cgcccaaagc ctgctcgata atttgacgag
    21361 cgattttgcc gtcaaacggt tcaacattat cttgtagcaa ggcgagctgg tcggcaagct
    21421 ccggtgcaaa cagatcacgt ctggtagcta acatttgccc gagcttgatc caaaccggtc
    21481 caagctcttg caaagccaaa cgtaaacgta caccgtaagg tttgtctgaa tgttgattct
    21541 tcacccaaaa caaagcctta cgccctagct ttattttgcg ggtaattggc agattcggaa
    21601 tggcttcatc aataccatag cgaagaaaag tgcggataat atggtaaaag cggttgagat
    21661 ttttgatgtt cattgaaata tatatttaat ggtaattagg aagattttag caaaattctg
    21721 taaaaattta accgcttgtt gggctactat gggtatttct gctcaaaatt ctcaatttct
    21781 ttctgtactt ccgcaataag tgtttgttca gaggggaggt aaagttggta ttggctggca
    21841 aaaattttat tctgattttc cggtagcgaa aattttacca ccgcatcatt tttatcggca
    21901 caaagcaaga caccaatagt ggcattttcg tgcggcagtt tttcaactcg gtcaaaataa
    21961 ttgacgtaca tctgtaattg ccccaaatct tgatgggtga gcttgtgggt tttaatttca
    22021 aaaatcacaa aacattgaag taaacggttg taacaaacca aatcgacaaa aaaatcatca
    22081 ccgtctaggt gcaaacgctt ttggcgtgcg ataaacgaga aaccgttacc caattctagt
    22141 agaaaatcct gcaaatgcgt aatgatggct tgctctaaat ccttttcgta ataagcactt
    22201 tcccgtttta gtccgagaaa ttccaatacc atcgggtctt taatgagctg tttcggatca
    22261 accggctgct gctcatttct ggcaacagca agcacacttt ccttatcatt actgagcaat
    22321 aatcgctcgt atagactact attaatttgc cgttccagct ggcgtgaact ccaattattc
    22381 ttacaacttt cagccaaata aaattccctt ttgtcagaat cggagatttg aattagacga
    22441 cgatattgtg tccaattcaa ttgcgaccgc agtgcggtcg caattggaaa cgcacgataa
    22501 aactggcgat aacgctctaa ttgacggcta caaaaaccac ttccaaattc tggctcaagc
    22561 tcttttgcga gcattttaat caggtatgtt ccataatcag cacgctcttg cccttgttgc
    22621 tcctgttcaa aaatccgttt tccgatgtgc caatacatca gcacacgttg gaaatctacc
    22681 gcacgaaccg cattttcacg agcttgagca ataatttgtt taatatctta gatcatcgtt
    22741 gtttctatta acataaaagc ctccgttttg gattaagttt atgcttaatc tatccggagg
    22801 caatttcttt cactcaactt ttcgagtcat atcacaattt tattttgtta aatttaattt
    22861 tgcacaaacg cttgcgtttg aacatcagct ttgctgatgg ctcgaagagc gaacgtagtg
    22921 agtaaatttt tgctctaatt tgagcgcttg ttgggcaagt tcttcgactt ggtcatagaa
    22981 atgcaccgcc tgtaaacgat gcaccaacac cggtctttct tggattaaat tctcaaccaa
    23041 atgttgatta ttttgctcaa attgagcttt tactttacct agcaattttt tagcaagatc
    23101 ggtgctagtt tgagccacta catcgccaac aaaaggggaa agcagttcgg cagggtcttt
    23161 ttcgagctgt tcaagtaatg cagtgaaatg ttgcaacact tgaatatcgc ccgtcagcac
    23221 caacgattta ttattaatca gctcggttaa tttttgctta tccgctagtt tcggcagggt
    23281 gtcaaatgcc agttgcaccg tacaatctgc ttccccctcg tagttgccaa gccaatcggt
    23341 tcggctttcg ctaaacaaca caaaaaagtc gattttaggc gaagttaggg cgatttttag
    23401 cacttttccg gacaatttac gcaaattcgg ctcaatatga ggcgagcgtt taagtaacgc
    23461 attaaaagcg gtttcaatca gaccaaaggt aaattgcggg agcattaatt gttgttttac
    23521 attatttaac attcgtacct acttaccctc ttcacttttg ggagaaggat agattgttct
    23581 tcattaagaa gcaaaatcag ggagaggggt atttgcaaaa tattgaataa atatgaccgc
    23641 ttgccccctc tctctgctta tttcgctaaa cgctcataag cggtctctct cccacaaagg
    23701 gagagagtca tttaagagaa aactaaaatt tataacctct gtgtaatgcc acaatgccgg
    23761 cacttaagtt gtagtaattc acgctttcaa agccagtttg ttccatcatt gcttttagct
    23821 cgtcttgttt cgggtgcatt cggatcgatt cagctaaata gcggtaactt tcggcgtcat
    23881 ttaccaccac ttcgcccact ttcggcaaaa tattgaatga gtagaaatta taaagctggc
    23941 tgattgggtc gataatcggt tttgagaatt ccaacacaag taagcgaccg cccggtttta
    24001 gcacgcggaa cattgaacgt agggctttgt ctttgtcggt aacattacgc aagccaaaac
    24061 taatcacaat acaatcaaaa gtgttatcag caaaaggcaa gcattcggca ttcgcttgaa
    24121 cgtagctcac atttccaacc acgcctaaat tgcgtaattt ttcccgcccg acttccaaca
    24181 ttgagctgtt aatatcggct aaaatcacct caccactttc accaacaatg cgagagaatt
    24241 ttgcggtaaa atcacccgtg ccgccggcaa gatccagcac tttttgccct ttacgcacgc
    24301 cactgcaatc aatggtaaag cgtttccaca ctcgatgaat gccgaaagaa agcaaatcgt
    24361 tcattaggtc atatttgcct gccaccgagt gaaacacatt tgcgaccagt tgctgttttt
    24421 cttctttcgc tacggtttta aacccaaagt gggtggtttc tgccgattgt tgcacttctt
    24481 gttgcacttc atctttaggt gctaattgtt ctacatcgct cattttcttg tctctagttg
    24541 caaaatttag gcgtaaccat agcaaaaaag cggtcgtttt tctttaactt tttgcaaatt
    24601 ttcttaagta aataaccgct ttcttgacta gaaaagccaa attctgtaac attcgcacac
    24661 tattttttct tgaggattac acattttgga cagtcatagt cgatacttac ccgtttaacc
    24721 tatcttgtct aacctcaatg ttaccgacaa ggtcggtaat gctcgcctag tatctttgtt
    24781 cctttttgtt ccaagcctcc taactatttg gagctaaaca tgatccgtgc ttttggacta
    24841 gataacgcat gtttaatcag cgttgatgaa actaacccaa ctttattaaa tgatgcgatt
    24901 tggattgatc tcatcgatcc atcagaagct gaacgaaccg tattagaaaa ccgcttagac
    24961 caaacactcg ctgaagaacg tgaattggaa gacttagagg cgtctgcccg tttctttgaa
    25021 gatgaagacg gtttgcacct gcactcgttc ttttactgct tagatgatga cgattacgcc
    25081 gatattgcca ctgtcgcctt cactattcgt gacgggcgtt tgtttacctt gcgtgatcgg
    25141 gatttacccg catttcgctt gtatcgaatg cgttcccgcc gtgagaaatt gattgacagc
    25201 aacgcctatg aactcttact cgatttattt gagaccaaaa tcgagcagct tgcagacgta
    25261 attgaagaag tctatgctga cttagaaaaa ttaagtcggg ttattctaaa cggtcagcaa
    25321 gaaaatgaga atttcaatga tgccctttct cgcttaactg aatttgaaga tgcaagttca
    25381 aaagtgcgtt tatgtttgat ggatacgcaa cgggcgttaa gtttcttact gcgtaaaacc
    25441 cgtttgccga ataatcagct agaacaagcc cgtgacatta tgcgagatat tgaatctctg
    25501 caaccgcaca atgaatcctt gttccaaaaa gtgaattttt taatgcaagc ggcaatgggt
    25561 tatatcaata ttgagcagaa ccgaattatg aaattcttct cggtggtgtc agtgatgttc
    25621 ctacctgcta cgctggttgc ttctacttac ggtatgaact ttgaatttat gccggaactt
    25681 catttccaat atggctaccc tatggcgatt ggtttaatga ttgttgccgc ctccgcccct
    25741 tatctttatt ttaaacgtaa aggttggtta taatttattt ttaaagccta tagttgaata
    25801 acttaggctt tcttatttta atgaatatgt tcacctctaa aaacaaataa agattaaaac
    25861 tgtttaccta ttatttattc acatatatac tgtgagatat tcttttcata ggcaggagat
    25921 ctattatgct aagtaagcta caacgcttta ccttaatgat aaaaagcacc atcattaagc
    25981 atccactgga aattttattc gttacttacg tcacgatttt acttatcaat aatgtgagcg
    26041 actacgaatt aatcaaacgc tttcaaaatc taattgctct ttttcctatt tgctttattt
    26101 tgctttacct gatacgcgat accaaagctt attggctatt cgctccgatt ccgatagcaa
    26161 tcgtcttttt ctttggtcaa attaatttaa cattattgga agattctcgt tattgggcta
    26221 ccatattttg tgtattcctt tgtttgatca gtcaatattg gtacaaaaac aaccattatt
    26281 ttgtagccgg aacaactaat aaattagtta acattgtctt tgctacagtt ttatctggca
    26341 ttatttttgc aacattaagc gctattacca tagccattat tgctttattt gatttaaata
    26401 aacaaaacaa ctttcatatt tttgaaaaat ttggcatttt ttctagtttt tgggcattcc
    26461 ctgttttatt tttaactctt gaacaacaga ctaccaatga ttctagatat ctaaaccgca
    26521 ttagtgaaat gttactaaac tggattttgt ctccggcatt aattatctat actgcaatta
    26581 tttatgctta tgtaattttt attgcggcta aggggcaaat gccagatggg gttgttgcaa
    26641 acgtagcgct tccctattta gctttcggcc tagctataca agcggtgcaa ttattactaa
    26701 aaaatgcaaa atggcagtgg ttttattctc actttaccta tttagcactt ttgccgttaa
    26761 cattaatttg gtatgccatc tatattcgtt tcagccatta tggcttaact gaagcccgta
    26821 tttatttagt gattggcaca ataaccttat ctatttgcta taccttatta ctatttaaac
    26881 agttggcgca atatcgtctc ttttctgcag tgtcgatagc aattatttta atttcagtgt
    26941 ttattttaga tccgaaaaca gttgcgctta aagatcaaac caagcggttg gacaactatt
    27001 tgctaaaaca caaattatta gatgtaaata acaaaatcag cacaaaagct gtacttaaat
    27061 accaagaatc attaaatgaa aaccgagatg aagccgaata tttttattca atgctccact
    27121 atgttgccag aggaatgcct gctgcacaat ttaaagagaa atatggcgta aattcaagct
    27181 acgatttaat gagtgaaata agagaaagaa atactgaccc acgttatttt gaagctacta
    27241 attctgagct ggttcgctta actaaagcag atatggcaaa tgctcgtgaa tatattacat
    27301 ttagtagcca attatatcgg cctaattcat tttcccatca aaaaatagaa aataagctat
    27361 gccaaaaact cctttctcaa ggttactatt ttgagggaaa tatattaaat attgagtatc
    27421 aatactcaga aacggctcaa gactgctctt caataacaca agatcctact gaatttgtta
    27481 tctactttaa aggacttggg actactattg aatttaacat taacgatatt ttgaaaaaaa
    27541 tctttgctaa acatcagtta tctattaccc agcaacacaa aaatgaggtt ttagaaaaga
    27601 ttaaaggcga tttactcaaa atggatttag gaaattcagt acttgggctt aagcatattg
    27661 agttaagatt tgaagacaat atcggctata tagtagaaag tattagtaca caatatatta
    27721 tgctgaaata aaaggagatg ctcgttcaat taaatttgaa cgagcatttt tcgttaaaaa
    27781 ctcaatttaa gcagccactc aaaattagtc tcatttaacc gatattgcgg tttcaaattc
    27841 gggccgcaag agtttgagcc aatgccgctc attttgtaat cgacacacag cacggtggaa
    27901 gggctttcta ccaaatcata actgtggctt ttagtggtta gctcttcctg tgtgtaaggc
    27961 gaaagattaa aactaaacgg ctgtggagaa gtaacagtta tcccatttgc ttgcacataa
    28021 tgcgtaccga aatggctgcc gttttcctgc ggtttgagat aatcggtatg attttctcgg
    28081 gcgctggttt gataagctcc gagtttcgcc aaatggtatt tgtcgatata actctcctgc
    28141 tcgccatagc caaaatagct cacttggtta ttccgtttat tcaagaaaaa ccgcaagcca
    28201 aagcgaggta aaaacggcaa atgagcgggg cgggttgcct gaacctgaat cgtcatttcg
    28261 ccattcgggg caagatgata attcactttc agggttaaaa tccgactttg agcggttgcc
    28321 acaatgccac attcggcagt aatgtttacg ccgtttttat cttgcatcag ttcggtatga
    28381 tacgccctgg tgtaacagtt atcgtagccg gcttttttcc aaaactcacg aattaagcgg
    28441 tcgttatcgg ttggggctcg ccaaatattg aaatccaacg gttgctcaat tactgcctcg
    28501 ccgtttttct caatccggct gaaaatgcct ttgagtttat cgaaagtgta gcgatagtcg
    28561 ccctgttgaa tccgccattc atttgcaaaa tcttgcacaa aaatgaccgc ttgcgggcgt
    28621 ggattaagtg ctggagtgac catcgcttga tgcagcgtga tttggtcaaa gcctaagtga
    28681 tgcccttttt ccaacagagc cgtgctttca tttaaagaat aatcaagggt taaaagttgc
    28741 aatttgccgt ttggttcggg cagcgttagc ggcaaacaag cggtctgatt tggctgacaa
    28801 tttaccaaac attgtccctg cagggtggtt tcgccgtttt cgctgaaaca gtaatgcacg
    28861 gtcagataat cagctaagtc gctgaaatcc aactgatttt tcagccaaat tttgcccgct
    28921 tttaactcag ctcgcaccgg gcgattcaca tttttcactt ctaacaaatt agagtgtggc
    28981 acacgctgtt gggaaaccaa gccgtccata cagaaattgc catcgtgcaa ggtttcgccg
    29041 aaatcaccgc catagccgta tttttcggtc ttctgttcgg cacttagctc agagttgggg
    29101 agcagaggag catggtcgca ccattcccac acaaagccac cgcacgcacc gctgtagcgt
    29161 tggaaggttt gccaataatc ttccatatca ccactcgaat tgcccatcgc gtgagaatat
    29221 tcacacaaaa taaaaggttt gtggttggca gagtcggaaa aatattcctc taaccgctcg
    29281 gtgcttgggt acatctcgct gtataaatcg aggtttgaaa gatcgttttg atgtgccgaa
    29341 tgttggtaaa tcgaaccttc gtagtgagtt aaacggcttg gatcccgttg ttttacccaa
    29401 cgggctgcga cttcaaaatt ttcaccaaag ccggattcgt taccaagtga ccaaataatg
    29461 accgaagtgc ggtttttgtc tcgctccaca ttggcaatgt tgcgatctaa aatcgcctgt
    29521 ttgaacagcg gatctcttgc aaaataacag aaattatcga ccgcttgttg gcgaatttct
    29581 tcctgtttgt tcgggtttgg cacattcagg aaaatgctgt tttccggact ttcaatatac
    29641 actgcactgg agccgtgaga ttcaagatca ctttcggcaa tcagataaaa accgagctga
    29701 tcgcacaatt cactaaacca cggagcgttc gggtaatggg cggtgcgaat agcgttgatg
    29761 ttatgggctt tcattaagcg taaatccacc aacgcttgct cacggctaat gctgtagccg
    29821 gttttcgggt cggaatcgtg gcggtttacc cctttaaatt taatcggggc gttgttgaat
    29881 agcatcacgc cattttccac acgaatctga cgaaagccga ttttttgctc aataatttcg
    29941 ttttggtagc tcaagcatag cgtgtagagt gtcggatctt ccgcattcca caaacacaaa
    30001 ttgcaaattt cttggcaaaa atcaccgctt gtttgctcgc agactaagcg gttttcaggg
    30061 tcgaaaagtt gaaaatgcac agcttcggtg taggtggaaa attgtgtttc caccttgagt
    30121 tctgcctttg aaagatcagc gtttaactgg tagcggataa agaaatcttg caggtagttt
    30181 tgctcacgtt ccaaaatata aacatcacgg aaaatgcctg acattcggaa tttgtcttga
    30241 tcttccaaat aactgccgtc acaccatttt agcaccacca cgacgaggct gtttttgccc
    30301 tgtttaagct gtttggtgat gtcaaattca ttggtgctgt ggctgatttg cccgtagccg
    30361 acaaattcgc cgtttacata aacaaacagg cacgaatcta cgccctcaaa atttagcaaa
    30421 tagcgtttgt taggcttggg gttaaacgtg atttcacgct gatacacccc gcaagggttt
    30481 tggtgtggca cataaggcgg atcaaacgga atcgggtagt tgatgttagt gtattgatgg
    30541 gcatcaaagc cttgagtttg ccagttagac ggcacgggga tttggtgggt aaatttggtg
    30601 ttgaggaaat cctccggcag atcgtgcgga cttggataga aattaaactt ccaatcgcca
    30661 tttagcaaag taaataactc agattgttcc cgttccaact gattcggcgt ttgcccttta
    30721 gcaaaaggaa taaaataagc gtggtgtagc gtggtattaa ggtgcaacac actcgggtct
    30781 tggtagtaat tcggtaacga cataaaagcc ctatgatcaa aaagatataa atacgaatac
    30841 actttaattc tcttataaaa tagggcaatc aactatgtga aaaattgtga ggcggatcac
    30901 aaaataattt cctcaccttt ttccttcgat tccgttataa tcacaagaat tttttatgtc
    30961 atttttcaag gaatttacca atgttatatc caagcgaaga atttttatat gcaccggttg
    31021 agtgggttga tcacagcgaa ggttacaccg atattcgtta ccataaatca aaagacggta
    31081 tcgctaaaat caccattaat cgtccggaag tgcgtaatgc tttccgtccg caaacggtaa
    31141 aagagatgat tgaagccttt tctgatgccc gttttgatga aaaaatcggc gtcatcgtat
    31201 taaccggtga aggcgaatat gcgttctgtg ccggcggcga ccaaaaagtg cgtggcgatt
    31261 acggcggcta caaagatgaa agcggtgtgc atcacttaaa tgtgttggat ttccaacgtg
    31321 atattcgtac ctgcccgaaa ccggtggtgg caatggttgc cggctatgcg attggtggtg
    31381 gacacgtttt acatatgtta tgtgatttaa ccattgccgc tgacaatgca aaattcggtc
    31441 aaaccggccc gaaagtgggg tcatttgacg gcggttgggg tgcaagctat atggcacgtt
    31501 tagtcggtca gaaaaaagcg cgtgaaattt ggttcttatg ccgtcaatat aatgcacaag
    31561 aagcgttaga tatgggctta atcaataccg ttgtgcctta tgctgattta gaaaaagaga
    31621 ctgtgcgttg gtgtcgcgaa atgctacaaa acagcccgat tgccttacgt tgcttaaaag
    31681 cagcattgaa tgcagattgt gacggtcagg ctggcctgca agagcttgct ggtaatgcaa
    31741 caatgttgtt ctatatgaca gaagaagggc aagaaggacg caatgcgttc aacgagaaac
    31801 gtgagccgga cttcagcaaa ttccgccgca atccataatt gacggcaaat acaagcggtt
    31861 cgattttgca aaaaatttgc aaaaatcgac cgcttacctt ttctaattta agttaatttt
    31921 atgtcagatg ttgagttaaa cgagcagagc gagcaagagc ctgagcaaaa accgaaaaag
    31981 cgaaactatt tcctttcaac cttattcaaa atcggggtga taggagcttg cagtatggct
    32041 ttttacggca tttatttaga cggtaaaatc cgtagcaaaa tggatgggca gatatgggaa
    32101 ttaccagctg aggtgtatgc tcgtattgaa agcattaaaa ttgaagacaa cttaacgctt
    32161 gagcaaacca aacaagcgtt gctggataac ggctatcgtc aagtttctca agttgcgaca
    32221 ccaggcgatt tcaaaattga agaaaatcag ctggtgttgc tacgccgagc tttcccgttt
    32281 ccagaaacac cggaatcgca acgagtgctt cgtttaactt tcaaacaaga taaattaact
    32341 tatattgaag atttggtgca gggtaagttg atcgaggagt tccgcttgga tccgaaatta
    32401 ctggcgttac tgcattccga tagcgatgaa gaacgtcaag cattacgctt acaacaatac
    32461 cctcgcttgt taattgagtc actgatttta accgaagatc gccgctttta tcagcacgat
    32521 gggattagcc caatcggtat tgcccgtgct ttaatcacta actaccaagc tggcagaaca
    32581 gtgcagggtg gcagtacctt aacgcaacag ttagtgaaaa acttgttctt aagtaatgaa
    32641 agatcgttgg tgcgtaaggt aaatgaagcg ttaatgtcgg tgattttaga cttccgttac
    32701 gataaaaacc gcattttaga aacctatctc aacgaaattt atttagggca gaacggtagc
    32761 taccaaattc acggttttgc attggcaagc caattctatt ttggtcgtcc gatccaagag
    32821 attagcttag accaaattgc gttattggtg ggaatggtaa aaggtccatc actgtataac
    32881 ccgtggcgaa atccgcaagg tgcggtagag cgacgtaatg tggtgttgcg attattgctg
    32941 gatcatcaag tgatcaatca agaactttac gctctgttaa gctcccgccc gcttaatatt
    33001 cgtgaaaaag gcacgattta ccgtgagcaa cctgccttta tgcaggcatt aaccattgat
    33061 ttgaaaaatg agttaggcga aattaagtca gctcaacttt ccggtactaa aatttttacg
    33121 acccttgacc gtaaacagca acgttcagcc gaacaagcag tgattaccgg tttggaagat
    33181 ctggaaagta aaaataaaaa agtcagcgat ttgcaatcgg ctattgtcgt ggcggaatac
    33241 cgcacaggta aagtgagggc gatagtagga gaccgcttaa cccaatttgc cggctttaac
    33301 cgtgcgattc agtcaaaacg ccaaatcggt tctttagtca aaccatcggt ttatgcgatt
    33361 gccttggcac agcctgaatt attccgttta aatacaccga tccaaaataa acaaatttca
    33421 attaaggttg gttcaaccta ctggacaccc cgtaactacg accgcagttt tagtggctcg
    33481 gtgatgttaa tggacgcctt agtccgctct ctgaatattc caacggtgaa tattggtatg
    33541 aaagttggct taaaaaaagt cattgccaaa caaaaagaga tgggctggga taatgcggaa
    33601 attccgcctt acccatcaac cttgctaggt tcatattcga tctcgcctta cgatgtaacc
    33661 cgctcttatc aagtaattgc caacgaaggg ctgaaaacac cattaaccac cattgaggcg
    33721 attatttcgc acaatggcga aatgttctat cagcgagata gcggcaaagt gagcgagcag
    33781 gtgcttccac cggaagctgc ggttcaaaca atgtatgcga tgcaacaggt tgtggaacga
    33841 ggtacggctc gtagcttaca aaacgatttt gccaaactga aattagccgg caaaaccggt
    33901 acaaccaata acgctcgaga tacttggttt gtgggaattg atggcgaaca cgtcacaacc
    33961 gtctggctgg gtaaagataa caatggggat accaacctca ccggttcaag tggtgcattg
    34021 tatgtgtata agcaatatct tgagagagcc ttgcctcagg cgtatagatt accgaaactt
    34081 aatacgatgc aatgggtggg gattaatagc tatggtagct ggaattgcga tagtggcaga
    34141 caaattccag tttggcgaga taaagggcaa cgttattgta ccagtgcagg taatgtagtg
    34201 gctacagaaa aaccaagtgt ttgggatgca ctttcgctga aaaaagaaaa tatcgaggct
    34261 aaagcagaag aagctgaagg gaagcaacca atccctactg aagaagttgc accaattgaa
    34321 taaaaataaa tttgatagcc attatcattc aagatacaca agctgataga ttctacctat
    34381 aaaaagtata tattataact atttgctagt tttcattttg gattgtaata tagtaataaa
    34441 ttaaataagc agtatctaat ttaatttttt aagattaaca attaagagga gcatattatg
    34501 gcaatgtcaa atatcggttt agataaagaa atcgcaaaaa aattagcaga tgagttaaat
    34561 ggtttattag ctacttacca agtgttttac actaatgtac gtggctacca ttggaatgta
    34621 cgtggtgtga acttctttga attacatgca aaatttgaag aaatctacga tgatttagtg
    34681 acaaaagtag atgaaattgc agaacgtatt ttaaccttag gtcacacacc tcaaaatgcg
    34741 ttcagccaat atttaaccaa gtcacaaatt caagaacata ttggtgtttc agctgcacaa
    34801 gaatgtttac gtggtacttt aaatggtttc aaaacattac tgggacaaca acgtgaaatt
    34861 cttgctctag caaatgatgc aaacgatgaa ggtactgctt ctcaaatgag tgattacatc
    34921 aaagaacaag aaaaattagt atggatgttc actgcagctt gtgctgaatg ttcagactac
    34981 gcacaaggtt gttcttgtaa ctaagttgca ataatataat taacccccga taatgaaaga
    35041 ttatcggggg ttactttttc agatagctat gtcgcaagga tttcaattta aacagttttt
    35101 tattcggcac gacagatgtg caatgaaagt caatacagat ggtattctat tgggagcgat
    35161 tgctcacata aaagattgtc agaatatttt agatctgggt ataggttctg gtttagtagc
    35221 acttatgctt gctcagagaa cagatgattg ttgtcacatt actgcgttgg aacttgaacc
    35281 aaatgcctac caacaagcgg tcgaaaatgc ccaaaattct gcatgggcaa atcggatttc
    35341 cgttttgcaa ggtgatgtga tgcagcaggc atttgaacag aaatttgact tgattgttag
    35401 taacccacct tattttgcag attcacttgc agctcgaacc acagagagag atttagctcg
    35461 ctcaattagc cattacagcc acttgaattg gctggcaaaa gcaaaaccat ggttagcaga
    35521 gaacgggaaa attacactga ttttacctat agcagctgca gaaaaattag ttgaccaaag
    35581 tgaacaaatt ggattgtatt gtgttgaaca atggttaatt tttaccaaga gcggcaaatt
    35641 ggctaaacgc agtatagtga gttttagttt aaacaagcaa aagcgtgaac ataaagagct
    35701 gatcatctat gatctagata attgttacac tactgagttt aaaagactta cccaagattt
    35761 ttatttgaat ttttaattta ctccccgggt tagtgttttc cacaaatctt cttcagctac
    35821 gatgatctag ccttaagcta aaaagcagat taccacccaa gataatccgc tttttagact
    35881 tagctattat gccaaacttg ctaccattac cgctttaata gtgtgcattc gattttctgc
    35941 ttgctcgaat gccacattca ttggcgattc aaacacctct tcggttactt caatgccgtt
    36001 tgccagtgcc ggatattttt cggcgatctc tttaccgact ttagtttcac tgttgtggaa
    36061 cgccggtaag cagtgcataa atttcacttt cgggttgtcg gttgcttgca ttaattcagg
    36121 cgttactcgg taaggcatta ataaatctat acgttcagtc cagctctcta gcggttcacc
    36181 cattgaaacc caaacatcag tatgcacaaa atcgacacct ttaattgcag tctcaatatc
    36241 ttcggttacc gtcattcttg cccccgattc agctgcaaat ttttcacaca ttttcacgaa
    36301 tgcatcttcc ggtaataagg ctttcggggc acaaattcgc acgtccatcc ccaatttcgc
    36361 cccaatcaac aggagtgaat tacccatatt attgcgagca tcgccgatat agacataact
    36421 gatttggcta agcggttttt cgcaattttc gatcatcgtt agcacgtcag ccaacatttg
    36481 ggttgggtgg aattcatcgg ttaagccgtt aaacaccggc acgccggcat aatcggcaag
    36541 ctcttgtact accgattgtt taaagccgcg atattgaatc gcatcataca ttctgcctag
    36601 cactcgggcg gtatctttca ttgattcttt atgcccgatt tgcgaggagt tcgggtcaat
    36661 ataggtaacg tgagcccctt gatcgtaagc tgctacttca aaggcacaac gagtacgggt
    36721 cgaggttttc tcaaaaatta aggcaatatt tttgcccttt aatttttgct gctcagtgcc
    36781 ggcatatttc gcccgtttta aatctcttgc taaatccaac aaaaagcgaa tttcacgctc
    36841 agtgtggttt actaaactga gtaaatgtct gttttttaag ttaaatgcca ttttgtttct
    36901 ccctgtaaac attaaaattt attttatgca aaataattgc ataaaaattc acttatagca
    36961 aacagaattt gcttaccctc attcgggtaa ataaaactcg cctttgccga ctaaaataac
    37021 ctctccgcca acaaaaatct tcccgttttg atcgactttt aataacaggc gattcggccg
    37081 ttgaatttca tcaccttgtg agatctgaag ctggattggt attttgcctt gtgcaatgtg
    37141 ccaaccgcct aaatttgccg ctgccgaacc ggtgccgggg tcttcgacaa tcgaaccttg
    37201 cgattgaaaa aacagtcgca ctttcgcctc atttccctca cgacaccaaa catatacact
    37261 gtctttcaaa aatgcttttt cagccagatt tgcatttatt ttgcactttt cgaccgcttg
    37321 ttgagaagct aactcaacca ataactgctc cacgccggtg tttacataac aaggctcgga
    37381 cgcaatatcc gcaacattca gccccaatat tgaggcacat tctgcacggc ttagcggtgt
    37441 gttttccagg ttcacaccat tggttaaagc aaaagtagtc acattatgtt gatgttgaat
    37501 cgctaccaat ccggcattag tttgcaagcg ataggttgtt ggaaaatcaa aggcggaatg
    37561 caacacaaaa gccgctccaa cagttgggtg gccggcgaac ggcatttcat aatcaggcgt
    37621 aaaaattttg agttttttga ccgcttgtga atcggtggaa gattgaataa ataccacttc
    37681 agaaaggtta aattggcgag caataagttg catttgtaag tcggttaatc cgtccgcttc
    37741 ataaaatact gcaagcgggt tgccgccaaa atggcttgtt gcaaacacat tcaccagcaa
    37801 ataaggatag ctctgcattt atcactcctt acataaactt aaagccacat tgggcgaaaa
    37861 ttctaccatt ttggtggcga atcgtaaaat tggaaaattt atcggtatcc ctctttagag
    37921 ttaactattt ttgatttatc tcaaagtttt aaaaaaaaga ttaggtcata cttctttcta
    37981 gtgattattt tttaatttga ggttcttatg ctttatgcag aatttttact tttattagcc
    38041 tttttatatg caggtagccg ttacggtggc atcggtttag gtgtggtttc cggcatcggc
    38101 ttatttgttg aagtgttctt cttaggaatg ccgctttccg ctccgccaat tagcgtgatg
    38161 ctcgtgattt tggctgtagt tacttgtgcc tccattctag aagccgctgg cggtttgaaa
    38221 tttatgttgc aagttgccga acgcattttg cgtagcaacc caaaacgtat tacctttctt
    38281 ggcccacttg tcacttatct gatgacctta atgctcggca cagggcattc ggtttactct
    38341 attatgccga ttatcggtga tattgcctta aaaaataaaa ttcgcccgga acgcccgatg
    38401 gcagcagcct ctgttgcttc acaattaggt attaccggta gcccactttc tgctgcagtt
    38461 gcctattact taaccgaaat cgttaaatta ccgggctttg aaggggtgac tttattgaat
    38521 gtagtcggcg taaccatcac cgcaaccttc tgtggtgtga ttgcgatgtc attatatagc
    38581 ttacgtcgtg gtaaagagtt ggaagacgat cctgagtatc aacgccgtat gcaagaccct
    38641 gagctacgca aacaaatcga gcaaacgagt gcaacgtctt tagacgaaaa actaccggca
    38701 agtgcgaaaa actcggttta tctgttccta gccgctattg caaccattgt gattattgca
    38761 atgattccgg ctattaaacc aacggttgct gctacaggaa aagttgccgg tatggatcaa
    38821 atcattcaaa tcgtgatgct aactttcggg ggtttaatct taattttaac taaaaccgac
    38881 ccgaaaaaag taccaaacgg catcgttttc aaatccggta tggtagcaac cattgcgatt
    38941 ttcgggattg cttggatgag tgatacttac ttcacccatg caatgccagc gttcaaagaa
    39001 ggggtaacag aaatggttcg agcccaacct tggacattcg ccttcgcctt gtttgcggta
    39061 tctgtagtag taaacagcca agccgtaacc gcaaaaatgt tattaccggt aggcattgca
    39121 atgggcttgc ctgctccatt attagttggt ttaatgccgg caacttatgc ttacttcttt
    39181 attccgaatt atccgtctga tatcgcaacc gttaactttg acgtaaccgg tacaactaaa
    39241 atcggtaaat attacttcaa ccacagcttt atggctccgg gtttagttgg cgtaattact
    39301 gcctgtattg tcggtatcgc cgttgcaaat gtgctaattt aattttaaca aaaaaacaag
    39361 cggtcagatt aagtaaattt tttaccaaat ctgaccgctt gattatttac tgcaaaacca
    39421 attaggcttt gttaaagagt tttgcatcta acgagtattt tccgccaccg ataaaaatat
    39481 aggttaagaa taataccgaa tacacgcctg ctaattcacc gccgtttaat aaaggtaata
    39541 gcacattgcc ttgagctccg tgagcaataa agaacgcgta tgccatcata cctgaaagga
    39601 taaacgctgt ttggcgggta aatagaccta aaataaagaa aattccgccc acaatttcca
    39661 aaataccgcc tacaccataa atggaggcaa ggggtacact gccgtttccg ttggtcatcg
    39721 acattggaaa ttcaaaaaat ttcgctgtgc cgtgtaataa aaacatataa ccggcaacaa
    39781 cacgggtgat taaaaacgct aaaggttgta aatttgttaa agtagagttc atttgctttc
    39841 cttaaaataa attgtgatat aaaggtcaat tgattgaggc aggcattcta ttttaaaaac
    39901 ctatacttca caatccagcc gtcatgaaat agattattta ccattaataa acaattaggc
    39961 tctcgctaac acccaaacct gaatttctac tactccagct ttgagtaact cggcacaaat
    40021 tacatttaag gtggaacctg tggtgagcac atcatcaaca atcgccactc gtttataggc
    40081 ttttaacggt tgatagaaaa atgccccacg cagatttttc cgccgttcag cagcggtcaa
    40141 ttctctttgt gagacggttg ctctcacacg ttgtaaactc tgggtatcca gcggaatctg
    40201 taaccacttc gataaccaat cacacaataa ttcgctttga ttaaaccctc ttttccaatg
    40261 tctgtgccaa aaaagtggta caggcataat cacttcaggc aagctcagaa cctgttccct
    40321 ttgagcttgt ttgattgcca gcagcaattg tcgggcaagg gcttgatccc accaatattg
    40381 ctgctggaac ttaaattgat gtacccaatg tgaaagtggc gctcggtatt catttaccct
    40441 cactaattta tgccacttcg gttcattttt caaacaatag ccacaagcgt ttcgaaactc
    40501 caccgcactc attccacaat gacgacaata aggggttggt tttagcaatt tttggcaatg
    40561 gctgcaaatg ccttgcacgc caatagcgag tggatgatta caatgaaagc aacggaagcc
    40621 gaataaattc acatttcctc cttttatttg cagattatca aatttagcct tattttttcc
    40681 ggctattttt gtgacatcgc tcgaaaaaag agtaaaatct cattatcagt aaataaaaag
    40741 gaaaccgaga tgaaatccct ccaaaaaccg atcaaaattg tctttttcga tattgatgac
    40801 accctctatg taaaacataa agcctatatt ccaaaatcaa ttaccgagca ggtattacct
    40861 cgtttaaaag ccaaaggcat tattccggcc attgccaccg gcagaaatca cggctgtttt
    40921 cctgaagctc tcaaacctta tttaaaccct gaaatcggtt ttgagctgtt tgttaccatt
    40981 aacgggcaat ataatttcta taaagatcaa ataattagtg attattcgtt aagccgtgag
    41041 caaattgaac gtattatcga aaaagcgaat gctttgggta ttctgtatgc ctttattacg
    41101 ccaatgacga ttgcagtttc cgaaaccaat ccgattgtgc acgaagcggt tttaccgatc
    41161 acaccgaatt atttgatcga tccacactac tacgaaaaag agaaaattgt gcaaatgtta
    41221 ctgttctaca ccgaagagca gaaacaagcg gtcgaaaata gtggcatttt tgcaaatgat
    41281 ttaaaagagg ctcgctggca ccccaatgcg gtagatattc tgcgaaaaga aaattcgaaa
    41341 gctcgtggca ttcaagatgt attagcaacc ttgaatattg agattgaaag tgcgatggca
    41401 tttggcgatg gtattaacga cttggaaatg ctcccgaccg taggtgttgg tgtggcaatg
    41461 ggtaatggcg tgccggaatt aaaagcggtg gcagatttca tcaccaagcc gcttgaggaa
    41521 gacggcattc tatacgctct tgaaactctt gaggtgattt aaaagcaagc ggttgtaagt
    41581 ttttctccat ttacaaccgc ttgtagtttc taattacgcc taaatagctt atcgcctgca
    41641 atcgctaaaa tcgccccact gacgaccacc aacgccccaa gataactgat ccaattcata
    41701 tccggcttgg caaaaatatg cggataaaaa tagtagctaa ggttggaaaa gatcatcgta
    41761 aaaatcggca acatcgtggt tacaatgcta acctttgaag tatcccaatg attcaacgcc
    41821 tcaccgtatg aaccgtagcc aattaaggtg ttcaacagca ataaataaag caaccccaca
    41881 gaaaaccatc ctcaagattg cctaactgtg ccggtgaggc aaacggtaac atcagcagag
    41941 aacagccgat gtaaataata aacagcactt gctgagagtt aaatttcgct aataataatt
    42001 tttgagccac gccgtatagc acccaaatca agctggctcc ggcactcaat aacactccga
    42061 gagcgtaggt gttgagctgt aaaatttcag caaatttatc gttaaaaaat gcgacaagcc
    42121 ctgcaatcaa taacacaaat ccaatctttt gaaacaagcc gaacttttcc ttaaacaata
    42181 atacgcctag tagaatcatc gaaaatggag ctaactgcca caatacttgg ttaatggtgg
    42241 gcgaaacata gtgtagagcc tctgcaaaca aaaagaaatt tgccgacaga ccacacaccc
    42301 ctaacaaaat taaaccgagt tcttttttgc tacaagcggt caatttgggt aaacgttttg
    42361 caaatcctag aatcagcaat agccctactg atgccacaac gaacctaacc caaactaaag
    42421 tttgggcatc tatcactttc aatacttgct gggcggcaat cggtagcgtt ccccaggtca
    42481 ttgctgcggt taatgcaagt gaaaagccaa gtaaggggcg ttgtttcatc gtggaaattc
    42541 ctttttctat tctatgtttc tatattttag aaagattgag atacaaaaaa accccgccat
    42601 tggcgaggtc tcttattgat tttgaaatga ttagtcagca atgatgctta catatttacg
    42661 gcttttctcg cctttcactt caaatttaac tttaccgtca gcagttgcaa ataaagtgtg
    42721 gtctttaccc atacctacat ttgaacctgc gtggaattta gtaccacgtt gacgaacgat
    42781 aatgctacct gctaatacag attcaccacc gaaacgttta acaccaaggc gtttagcttc
    42841 agaatcacga ccgttacgag ttgaaccacc agctttttta gttgccatct tctagatctc
    42901 ctctgaaatt atgcttgaat cccagtgatt ttcacttctg tgaaccactg acgatgacct
    42961 tgttgtttac ggctgtgttt acgacgacgg aacttaacga ttttaacttt ctcgccacga
    43021 ccttgtgcta caacttcagc cactactttt gcacctgcta caaccggtgc accgatttta
    43081 acatcttcac cgttaacgac cattaacact gagtcaaatt caactttctc accagttgca
    43141 agttcaagtt tttctaaacg aactacttga ccttcactta ctcggtgttg tttgccgcca
    43201 ctttggaaaa ctgcgtacat atttactccg ctatgtgcca actgcttttg cttttaggca
    43261 ctaaattaat tcataaaaat agggttgcaa ttctacggaa aaagattcga aagagcaaga
    43321 gcgattttga gaattttttg aaatttgcaa aaaatggtaa aaatactacc gcttgtttca
    43381 actgcgacta aaaaacaata gactgctccg attttacaac aaaatcataa ttcttttttg
    43441 aacacaggct aaattaaggt agaatctact caattttcgt cttactttat ggattcgatg
    43501 gctgtgcaac ttttttcttt agaacaaatt caagcccttg cgaatgaaga tatgcaagcg
    43561 gtaaatgccg aaattttagc tcaacttaat tccgaagtgc tactgattaa ccagctcgga
    43621 cattatatca tcgcaggcgg tgggaaacgt attcgcccgt taattgcggt gcttgcggct
    43681 cgtgccttgg gttatcgtgg taaaaagcat atcacggcgg ctgcttttat tgagtttgtg
    43741 catactgcta cacttttgca cgatgatgta gtcgatgaat ccgatatgcg tcgtggcaga
    43801 ccaaccgcaa acgcccattt tggcaatgcg gctagtgtat tggtagggga tttcatctat
    43861 acccgttcgt tccagatgat gacggattta gactctctgc gtgtgttaaa agtgatgtct
    43921 gccgccacca atgcgttggc agaaggggaa gttcagcaat taatgaacgt gaacgaccca
    43981 aacaccactg aagcgaacta tatgcgggtc atttacaata aaaccgcccg cttgtttgaa
    44041 gccgccactc aatgcgtggc gattgcggct gatgcttctg aggaaattga aaccgcatta
    44101 aaaaattacg gttgctactt aggcacggca ttccagctga ttgacgatat tttagactac
    44161 tccgctcaaa gcgaaagttt aggcaaaaac gtaggcgatg actttgtgga aggtaagcca
    44221 accttgccat tgctccacgc aatgcacgct gccgacaaag caggcaaaac tactcaagca
    44281 gagctgattc gcaatgctat cgaaaacggc ggcgaattgg aacaaattcc acaagtattg
    44341 gcaattatgc aagaacatca atctctggat tatgccatgc aaaaagcccg tgaagaagcc
    44401 caaaaagcgg tggattcatt aggggtttta ccggaaagcg agtacaaaca agccttggtt
    44461 tcattggcgt atttatcggt ggatcgctct tattaatttg caaaaaatca tataaattta
    44521 accacttgta ggggcaaatg atatttgccc cataacctat aattcttttg ggcaaatgtt
    44581 atttgcccca acataacaat gactgaacaa aaccaacgac cccaagaaca tattgaaagc
    44641 gtacgagcga gacgccgtgc tcaaaatcag aaaaaaggcc cgaatgcccc gtttgtgcgt
    44701 gagaaattaa cgctgccaaa cggacataac aaattactgc tgcactcttg ctgtgcccct
    44761 tgctcgggtg aggtaatgga ggctattcac gcctccggca ttgagtttac gatctatttt
    44821 tataacccga acattcaccc gctgaaagag tatttgatcc gcaaggaaga gaatattcgc
    44881 tttgccgaaa agtggggtat tccgtttatc gatttagacg atgactacga aaacgaccgc
    44941 aaagagtggt tcaaaaaagc caaaggaatg gaatgggagc cggaacgagg cattcgttgc
    45001 acaatgtgct ttgatatgcg gtttgaaaaa gcagcggaat acgctcacaa caacggtttc
    45061 cctgtattta ccagttgctt aggcatttcc cgatggaaag atatgaacca aatcaacgac
    45121 tgtggtcacc gtgcagcagc caaatttgat gacgtggttt actgggacta caactggcgt
    45181 aaaggcggcg gctcacaacg aatgatcgaa atcagcaaac gtgaacgttt ctaccagcaa
    45241 gaatactgcg gttgcgtcta ttcgttaaga gatagcaaca aatggcggtt ggaaacaggg
    45301 cgtcagcgga ttgaaatcgg taagctctat tactcacccg attaaatgtt acttttcttt
    45361 gcttcgccaa agaaaagtaa ccaaaagaaa ggcgacccga acttcgctta gttacgattt
    45421 ccttaacgga aaatttgtaa actcgctacg ctcaaacagt acaaattttc ctagaaatcg
    45481 caagtcgctc agacgggaca agcggtacat tattcaaaat tttttacaaa atatagtgat
    45541 gtactcttcc cttctgaacc gcccgaacgt gtttgaattg gtaggaaaat ttactctgag
    45601 cgaagcgaat gtaaattttc cgtgaaacca attcaaacta agtgaggata agcggtgaag
    45661 taggggtgtt tctttggtta ctttctttgc acatgcaaag aaagtaacga aaactcagat
    45721 atagatttca acttaaaaat ttacagaagg aataataaca aatgtcaaaa ttcgctatgg
    45781 ttttccccgg tcaaggctca caagcggttg gaatgcttgc cgaccttgcg ccacaatatc
    45841 caatcgtgga agaaaccttc aaacaagcaa gtgatgtgct tggctatgac ttatgggatt
    45901 tagtgcaaaa cggtactgcc gaagagttag ggcaaaccca ccgcactcaa cctgcgttgc
    45961 ttgcctcaag cgtggcactt ttccgcattt ggcaacaaaa attccctgag caaaaaccag
    46021 ccgtgatggc agggcatagt ttgggtgaat actcagcgtt ggtgtgtgcc ggtgtgttgg
    46081 atttccaaga tgcgattaaa ttggtcgagt tgcgtggtcg tgcaatgcaa gaagccgtgc
    46141 cggcaggcag cggtgcgatg tttgcgatta tcggtttaga taacgaaagc attattaaag
    46201 cgtgcgagca agcagcaagc gagaccggtg aaattgtctc tgcggtaaac tttaacagcc
    46261 cggggcaagt tgtgattgcc ggcacaaaag cagcggcaga aaaagcagga gaattgtgta
    46321 aagccgcagg tgcaaaacgt gcgttaccat tagcggtgag cgtaccttca cactgtgctt
    46381 taatgaaacc ggcggcagaa aaattagccg aagccttgca aaatattgag ctaaatcaac
    46441 cgcttgtccc tgttatcaac aacgtggatg tggcagtgga aacagatgcc gataccattc
    46501 gtaatgcact tgttcgccaa ctttacagcc ctgttcgttg gacggaaacc gttgaaaaaa
    46561 tggcacaaga tggcatcact actttatatg aaatcgggcc aaacaaagtc ctaaccggtt
    46621 tagcaggtcg tattgtaaaa gaattatcag ccaaagcggt aaatgatgtt gccagctttg
    46681 aggcggttga ggcttaattt tcgggagcgt aaaatgagta aagaaaccct atttatgcta
    46741 ataagtgcat tgattgcctt agtgatttta cctttagctt atactgttgg tatcgctaaa
    46801 gaaacattag gcggaaatat gggaatgtta tccattgctg ccggttgctc atttttagcc
    46861 tattttttaa gtctaaaccc gaaaattcgc cacgccttta tcggaggttc agctattaca
    46921 gctgctgcta ttcaagcttg ggtattatat ggtgtgctat taagcgaaaa tgaccccaaa
    46981 agtgcggtcg ttttatttca aatttatctg tttagtagtt tagggccact gtttttttca
    47041 gctatttggg catttactcg cccacgttgg atttacccta aacaaggtag tgcggtgaaa
    47101 tatgccttat ttggtggctt aacgaccgtg ataaactact tgattaccct ttttattttt
    47161 tatattctga cgttataacg tcatactaag gagaatttat gagcaaaatc gcattagtta
    47221 caggggcaac ccgtggaatc ggcaaagcga ttgccgaaga attggtagca aaaggctaca
    47281 tcgtagtcgg caccgcaacc tctgaaaaag gggcggaatc tatttcagct tatttaggcg
    47341 agaacggcaa aggcttagtg ctaaatgttg ccgatgcaga gtcgattgag agcgtattaa
    47401 agcagatcaa agagaccttt ggcgatgtgg acgtgttagt caataacgcc ggcattaccc
    47461 gtgacggctt attaatgcgt atgaaagatg aggattggtt cgacatcatt caaactaact
    47521 taacttcggt ttatcgttta tccaaagcgg tattacgccc gatgatgaaa aaaggcggac
    47581 gcattatcac gatcggttct gtggtcggct caatgggcaa cccggggcaa accaactact
    47641 gtgctgccaa agcaggctta gttggttttt ctaaatcttt agcgaaagaa gtagcaagcc
    47701 gcggcattac ggtaaacgtg gttgctccgg gctttatcgc cactgatatg accgatgagc
    47761 taaccgaaga tcagaaaaat gcgattttaa gccaaattcc tgccggtgaa ctcggttctc
    47821 cacaagatat tgccaaagca gtcgctttct tagccagcga tgatgcccgt tatatcaacg
    47881 gtgaaaccat tcacgttaat ggcggtttat atatgagcta atccgctaca agcggtcttt
    47941 tttcaaccga gctttgtaaa ttcagagttc ggttttgtta tttgttattt tgtgttatca
    48001 cctgctttat aggtataggt gaaaaagtgt gaatatgtta tgactagaaa tacattagta
    48061 gtaggctttt tattgtttgc tattttcttt ggtgccggca atctgatttt cccaccaaaa
    48121 ttaggttatg aaagtagtac agaatttttc tcagccattt caggctttgt tttaactgga
    48181 gtagggcttc ctctactcgg tattatcgtc agtgcatttt ataatggagg ctataaatct
    48241 gcattagaca aaatccaccc ttggttttct ttagcattcc taacttctat ctatttagcg
    48301 atcggtccat tctttgccgg tccgcgcacg gcagcaactg cctatgaaat ggcgataatg
    48361 ccgtttttag gggattccag ccaagtgtca atgttaattt ttaccttaat ttactttgcc
    48421 tttaccctat ggttagcgct aaatccaaat aaaatggttg atcgcattgg tgcaattctt
    48481 accccgatct tgcttataac catcattgga ttagttattc gagccggctt tattttagat
    48541 accgatccac aaatcactac gcctaatacg aatgaacaat cttacttttt taaaggtatg
    48601 gttgatggct atctaactat ggatgcactt gcttcgttag cctattcggt aattgtatta
    48661 aatgctattc gtgggaaagg ggtaagccaa gccgcattac aacgccaaac agtttctgcc
    48721 ggcttagttg cagcagttgc tctagctgta atttatattt cattgggttg gattggtaat
    48781 aatatgccaa ttagtgcaaa cacactttcg atgttatcag aaagaaaatt ggatctaggt
    48841 acttacattc ttaacactgt gactacccaa gccttcggtg aactcggacg tagtgtctta
    48901 ggagtgattg tttcacttgc ctgtttaacc actgctgtcg gtttagccgt atcagtcagt
    48961 gaatacttta atgaaatttt cccgaaaatt tcatataaag tttatgctat cttatttact
    49021 gtgattagtt ttactgttgc taaccaagga ttaaaagaag ttattagcaa atccattccg
    49081 gtattattag ttctctaccc aatagcaatg actgtcattt taatgttgct gattaattta
    49141 gtgattaaac ttccgttgtc tgcacaacgt ctatcactcc tattagtgac aattgtagcg
    49201 atagcttcag ttgccggtgt cgggtttacc gaaaacttgc ctctaaaatc ctactcgatg
    49261 gaatggctac ctttcgctat cattggagct attattggag caattatcca cccgcttacc
    49321 ggtcgaaagc ataaataaag taaaggcagt gagcattcac tgcctctttt ttaggagaga
    49381 ataatgcctg aattacccga agttgaaacc agcgttcgtg gtgtatcgcc ctatttggtt
    49441 gggcaaacta ttgaacaaat catcgttcgt cagccaaagt tacgttggac ggtgagtcct
    49501 gaattaagcc aaatggcagg ggcaaaaatt accgcagtag aaagacgtgc caaatatctg
    49561 attatccgca ccgacaaagg cgatattttg gtgcatctgg gaatgtccgg ctcgctcggg
    49621 attttgcaag aacgtcaaca aaaagaaatt ggcaaacacg accacgtcga tcttattacc
    49681 caaaacggca caattttacg ctataacgac cctcgcaaat tcggctgttg gctatgggca
    49741 gaaaaagcag aagatcacga actgttgcgt aaactcgggc ctgaaccgct ttcaaacgat
    49801 ttcacagcag attacttatt tgcaaaaagc cgcaaaaaaa cgaccgcttg taaaaccttt
    49861 attatgacca atgaagtggt tgttggggtg gggaatatct atgcgtgcga aagtttattt
    49921 atggcaggca ttcaccctga gcttgcagca caaaacctga ctaaaaaaca gtgcgaacgt
    49981 ttagtaaaaa ccatcaaaga agtgctgact aaagcgatta ttcaaggcgg cacaacactg
    50041 aaagatttta tccaacctga cggcaaacca ggctattttg ctcaagtgtt gcaagtgtat
    50101 ggaagaaaag gggaaacctg taatgactgc ggaaagccga ttgaaactaa agtaatcggg
    50161 caacgtaata cctatttttg cccgaagtgt cagagattgc cgaagtaatc taataataaa
    50221 ctctctcccc ctgagggaga gagacagctt gttgaaacgt taagtgaaac aagcagagag
    50281 agggtaaaac ctaaacctgc aaccaaaagg taacaggccc gtcattttgt aggctgactt
    50341 gcatatcggc tgcaaattgc ccggtttggg tatgaatctt agtggcggct tgttgatgaa
    50401 agtaggcata caaacgttcg gcatcaaccg ggcttgctcc ttttgagaaa ctaggacgca
    50461 agcctttatt ggtatccgcc gcaagggtaa actgtgaaac cactaacaaa ctgccacctg
    50521 cttgctgtac gtttaagttc attttcccct cgctatccga aaacacccga taattcagca
    50581 ctttttccag tagcttatct gctttcgctt catcatcgtc tttttccaca ccgagcagca
    50641 ccaacaaacc gcttgcaatt tcgccaacga cttgcccttc aacctccact tttgcgaatt
    50701 taacccgctg aattaagcct atcattaatg ctccccttgt ctgtttccat ttcgtctaaa
    50761 accgccgcaa attgcccgcc aagtaatacc acctgccaac ttaactgaat ccataacagc
    50821 ataatcggta acaccgctaa tgctccataa attgcctgat aagacgggaa ggcagtaata
    50881 taccaaataa aggctttctt ccctaaagta aagaaaatcg ctgccattaa tgccccgata
    50941 gcagcgtgtt gaaattttac ctttctaatt ggaataaatt tatacactaa ggtaaaaagt
    51001 agccaaatta gcaaaaacgg catcaattct aataaatgct gcccgagcga taacgctcca
    51061 tttccattaa aaatagaaag cgacattaca taggtgctaa tcgcaatgct agcaccggca
    51121 agcagcgggc caaacagcaa aatgagaaag taaagcaaga aagagaacca catcggacgc
    51181 tgacgattat cgtgccaaat ggtattcaat gcctcatcaa tactcttaat cagcataata
    51241 gtaaccacaa ataagccgat aaaacttacc agccccattt gtttggcatt actgacaaac
    51301 aactcaatgt attccgacac catctcgctc gcactcgggg caaagttgtc ataaatgaac
    51361 gcttttaact gctcgtttgc ttcgtggaaa atcggaaaaa aggtaaaaat ggaaaacagc
    51421 acgacaataa acggcactat cgccagcatt gtgctataag tgagataacc ggctgaaatc
    51481 gcaatgttat tttcattgta acgcttggca aagagcttaa taaatctcca cagtcgattt
    51541 aacatcttaa cctctcacca aataatcgcc ttcacacacc catttgtagg tggttaaggc
    51601 ttctaatccc atcgggcctc gtgcgtgtaa tttctgcgtg ctaactgcca cttctgcccc
    51661 taaaccaaac tcaccaccat cggtaaaacg ggtgctggca ttaatataaa ccgccgcggc
    51721 atcaacctgt tgtacaaatt gacgggcaag ttgataatcg gaggttaaaa tcccctctga
    51781 atgctgcgaa ccataatggc ggatatgctc taccgcttgt tgcaggtcat tcaccaccac
    51841 cacgttaaga tcaagcgata accactcttg gctcaatttt gcttgatcaa gcggttcaat
    51901 tccttcaatt ttttgcaaat cgttactgtg aatagtaacg ccaagctgtt gcattttggc
    51961 gaccaatttc ggcaaaaatt ccaccgcaat cgctttttcc accaacagcg tttccagcgt
    52021 attgcaagtg cttgggcgtt gcgttttggc attagcgatg acctctagag atttctcctg
    52081 atccgctgtt ttttccacaa acagatgaca aaccccaatc ccccccacaa tcaccggaat
    52141 ggtcgaattt tctttacaga attgatgtaa acctgcaccg cctcgaggga tcaccatatc
    52201 aatgtagcga tctagcttca atagttccaa taataaggct cgatccggat ccgtcaccgc
    52261 ttgcactgcc aatttcggca agccggcttt ttctaacgca tcttgcacta catcaaccaa
    52321 cacagcattg gtaaatttgg tctctttacc gccacgcaaa atcactgcat tgccggtttt
    52381 taggcataat gatgccacat caatggtcac attcgggcga gcttcgtaaa tggttaaaat
    52441 caccccgagc ggcacacgct ggcgttcgat tttcaaaccg ctgtctaaca cgccaccgtc
    52501 catcacctgc cccaccggat ccgctaattt ggcaacattt cgcacatcgt tagcaatgtc
    52561 ttttagccga tcttcattca ataataagcg gtcaataatc gccaatgaaa tcccttgtgc
    52621 ttgagcaaat tcaatatctt tggcattagc gtataaaatt tcttctgcac gttgctcaag
    52681 gctatcggca atcgtgagta aggcttggtt tttctgtagg ttgccaaatt gagccagctc
    52741 aaaactagct tgtttggctt gctgggcaag ttctatcatc tgcataaatt aggtctcatt
    52801 taatcaatat tctccataat ctaacacgtt cttttatgtg aagaaatatg caaaagccaa
    52861 gaaaattgga taaaatgggg gaattttaaa acattacgca attcccctct ccctgatttt
    52921 tctcctgaac ggagaaaaat ctatccctct cctacaaggg gagagggtag aatttaactc
    52981 tctccccttg tgggagagag accgcctaca gattcgttca gaatctgtag gcagagagag
    53041 gggtaaaaac agataaaact taaacaaaat gataaacact acccctaaac agctaatcca
    53101 cattcttccg cctcaactgg caaaccaaat tgctgccggc gaggtggtgg aacgccctgc
    53161 gtctgtggta aaggagctag tggaaaacag tttagatgcc ggagccaata ctattcaaat
    53221 cgacattgaa aaaggcggct ctcagcttat ccgcattcga gataacggtt gtggtatcag
    53281 caagcaagat ttaccgctgg cacttgctcg ccacgctacg agcaaaatca gcagcttgga
    53341 agatttagaa gccattttaa gtttaggctt tcggggcgaa gcattggcaa gtatcagctc
    53401 ggtttcacgt ttaacactga cctctcgtac cgcagagcaa accgaagcat ggcaagccta
    53461 tgcacaaggg cgggaaatgg cggtggaaat tcagcctgcc tcacacccga ttggcacaac
    53521 cattgaagta gcaaatctgt tttttaacac accggcacgg cgtaaatttc tacgcaccga
    53581 taaaaccgaa tttgcccata ttgacgaggt ggttcgccgc attgcccttg ccaagccgaa
    53641 tatcagtttc agcttaagcc ataatggtaa aatcgtccgc caatatcgca aagtgcaaga
    53701 caattcggta gagcagcaac aaaaacgggt tgcagccatt tgcggtgatg agtttattca
    53761 acattcaact tatattgaca ggcaacacgg ggatctgcac ctacacggct gggttggctc
    53821 accggctctt gcccgtctgc aaaacgacct ttgctacagc tatgtgaacg ggcgaatgat
    53881 gcgggataaa accatcaatc acgccattcg ccaagcctac ggcgacagca ttgcaagtgg
    53941 ttactatccg gcttttgtga tctttttgga tttagatccg acaatggttg atgtaaacgt
    54001 tcacccggct aaacacgagg tgcgctttca tcaaggaaga ctggtacacg actttatttt
    54061 gcaaggcgta ctcaacagcc tgcaacaaac ccaacctacg cttgaactgc gaaatgaagt
    54121 gaacgagccg ttaccgagct atgttcaaga cactaaccgc caagctgcgg ggcaaaatat
    54181 ttttgtgtcg caaaccgctc cacaagcggc cgaatttacg caaaaaaatg caagtcgatc
    54241 aagctatacg cctaaatttg aacgaagcaa cagtgtgagt tcgtccgctc aaaaatggta
    54301 taaggaattg gttggtggcg atttgcacca aacaacgcca actatcaaaa cgcaaagcac
    54361 gcttgttgag ccaaaaacag aaccccaaac tgaacataaa acagaagccg tttcgcaaaa
    54421 aattacgcaa attgcaccgc ttgcaagcca ccattcacaa gccttagcga ttgtaaaaaa
    54481 ccaagcggtg ttaattaaag aagaggaaaa tttttacctg cttccactgg caacattagc
    54541 cgagcttaaa ctcaagctac aactggaaaa agggcaatct caagcgttgt tgatcccact
    54601 gaatctcagt ttagatcaac aacaaaccga acgctggcaa caaaccaaag aagaactaac
    54661 taagcttggc ttttcgatca gcgaaaaaca gtggcaagcc caaacacggc tcacagtgct
    54721 ttccgtacca caggctgtca gagaacaaaa cctgcaacag cttttatttg ctctgttcaa
    54781 ccaaacacaa gcggtcaatt tagccgaatt ttttgcaaaa aaatgcgaaa aacccaccgc
    54841 ttgtacgcta agtgacgtga ttgctctact ctcagaaatt gagctttatg ccaatgggaa
    54901 aaaagagctg gagggaataa ggaaggaagt ggatttttcc aagtttttat agtctaaagg
    54961 gcaataccct ttagccaaat aaatgagagt ggctgccaat tcgcagcagc tctagcttat
    55021 catcttccac ttttcgatag ataagaacca aatcaggttg gatatggcaa tccctaaagc
    55081 ctttccattc gccggttaaa gcgtgatcgc agtatttctc aggtaatggc ttgtcattaa
    55141 tcagaaaata caacgcctca attaatgaag aggataaaga ctcaaccgca cattttttat
    55201 agtcacgttt aaaagcatta ctatactcaa tctctcgcat tgagttgctc cattaaatcc
    55261 gcaatactat ttgctgaatg tagcttttcc tcgccattct taacagccct taatacttct
    55321 gctgtctcaa aattaggctg ataatcaaac tgaaaacgtt tttctgttgc gattttcgct
    55381 aatgtcattc gcatcacatc agagacagtc aagccgatac cggctaacac ctcacttgct
    55441 tgctctttaa tttcagggct gattcttacg cttactaatg cactatttgc catcaaaaac
    55501 tccttttgta tatcaaatga tatacaaaat aacatttaac aaaaaattgt gcaataaaaa
    55561 agaaattcaa agaaaagaaa tgaatagtta aaattagctc gttacaagaa atcattgagt
    55621 tactcaagaa atcaaggtaa tataaagaag tctgggcgga acacgaaccc gcccctagca
    55681 tctagccgct tacaagaaca gatagattag ttgaaagagc gtgaaaattt caactgctgc
    55741 acacagaaac ccaagtgcaa ctaaaatcaa tagtagttct ttcattgtaa gcctccttag
    55801 tgctactaag gatgatttag gctcaggcta ctgcgaatag ccctaacgag cctaccagta
    55861 gcacaatcag gattgtaaca aaaaagctgt gaatttcacg gctttttttg tatctatata
    55921 cagtatatta atatgaataa aaaacccctt gccctttttt taatggggcc gactgcctcc
    55981 gggaaaaccg atttagctat tgctttacgc caagaattgc cggttgaggt aatcagtgtt
    56041 gattctgcct taatttacaa aggaatggat attggcacgg caaagccaag caaggaagag
    56101 cttgcccttg caccgcatcg cttgattgat attttagacc ctgccgagag ctattcggcg
    56161 atgaatttcc acgctgatgc gttgcgtgaa atggcagata ttacctcaca gggtaaaatt
    56221 ccgctcttgg tgggtggcac aatgctttat tacaaggcat tgcttgaagg gttatctccc
    56281 ctgccctctg ccgatccagc cattcgggct gaaatcgaaa gccgagcggc acaacacggc
    56341 tgggcaacat tgcatcaaga attagtgaaa atcgacccga ttgccggtgc aagaattaac
    56401 ccaaatgaca gccaacggat caaccgagcg ttagaagttt tttacattac cggcaaaacg
    56461 atgaccgaac tcactgctca gcaaggtgag gctctacctt ataatatctt acaatttgca
    56521 atcgctcctc aagatcgtgc agttctacac caacggattg aacaacgctt tcacaaaatg
    56581 attgagctag gctttgaaga ggaggtcaag cggttatttt tacgcaaaga tttgcatatt
    56641 aatttgccct cgattcgctg tgtgggctac cgccaaatgt gggaatattt gcaaggcgat
    56701 atttcgctcg atgaggcgat ctttaaaggc atttgtgcca cccgccagct ggcaaaacgg
    56761 cagattactt ggctgcgtgg ctggcaaggc gaactgactt ggttagatag tttagctccg
    56821 accagttcta aagcaaaaat ggtggaaaag atcgatcatt atttaaagaa ttgtgataat
    56881 atctaaacgc ctttggcact tatcgcatta tttggtgtct taaaaatcac acaactataa
    56941 aaaggaaaat aacaatggca aaaggtcaat ctttacaaga tccatatttg aatgcacttc
    57001 gtcgtgagcg tattcctgtt tcaatttatt tagttaacgg cattaaatta caaggtcaga
    57061 tcgagtcgtt cgaccaattt gtgattttat taaaaaacac tgtaagccaa atggtgtata
    57121 aacacgctat ttcaacggtt gttcctgccc gtgcgttatc gcataacaat aacaaccaag
    57181 cccaacacgc tcagcctgct gccgaagtaa ctgaacaagc ggaataataa cattattact
    57241 caaccaatgt taaacgaatc attgccaaac tcagaagaaa attctgcgtt tggctttgct
    57301 ttatctgaag caagccaaac tacagaagcc gcctcgccta ccgatccaga aaatcaagat
    57361 aaagccattt tggtgcatct ctatctcggg caacataaag atgttgaaaa tttgctggaa
    57421 tttaaaacgc tggcagaatc tgccggtgtc gaagtgctgg caacgcttac caccagccgc
    57481 caaagttcgc atatcaaata ttatgtgggg caaggcaaag cggagggaat tgccgaagcg
    57541 gtagaacgac tcggggcaac agtagtgctg gtgaaccatc aacttagccc ggctcagacc
    57601 cgtaatttgc aatcgttatg cggctgccgt gtggtggata gaaccggctt gattttggat
    57661 attttcgctc aacgggcaag atcgcacgaa ggcaaactac aagtcgagct ggcacaactt
    57721 cgccatttat cgacccgttt ggttcgccga gttactaatc aagaccaaca aaaaggcgga
    57781 gcagttggct tgcgtggtcc aggtgaaaca cagctcgaaa ccgatcgccg tttgattaaa
    57841 gtgcgaatcc aacagttact caaccgcttg gaaaaagtca gcaagcaacg caatcaaaat
    57901 cgaaaaacca gacaaaaagc cgatattcca acagtatcct tagtgggcta taccaatgcc
    57961 ggcaaatcta ccctgtttaa tgcgattacc caagctggtg tttatgctgc cgatcaactt
    58021 tttgcgaccc ttgacccgac tttacgccgg attcaggtgc aagatgtcgg cacgacaatt
    58081 cttgccgata cggtaggttt tatccgtttt ctaccgcacg atttagtttc agcctttaaa
    58141 tctaccctgc aagaaaccac cgaagctact ttactgctcc acgtcattga cggctcagac
    58201 gaacgcaaaa acgaaaatat tgatgcggta aatcaagtgt tggacgaaat cggagcgtta
    58261 gatattccta ctttattggt attcaataaa attgataaat tagaaggtgt agaaccgcat
    58321 attgaacgca atgccgatgg cacgccagtt gccgtgtatc tttccgccca agaaaatagc
    58381 ggcattgagc tgttattcca agccattcaa gaaaggcttc gcagtaactt agtgtgtgaa
    58441 aacttgctcc tcccggttac tgccggtgca atttacgcac aatttaaagc agaaaactgc
    58501 attaaaaccg agcattttaa tgagttcggt gaacggatta tctctattga aattaacgaa
    58561 gtgcaatgga acaaatgggt gaaacaattt ccggatctag ccgaatatat tgagctggca
    58621 aaatgggggt aattaatctc acttctgagt aagttatatt taaattatgc aagcggtcaa
    58681 ttctttacgt ttttttgcaa aaaagtgtaa agaattgacc gcttgtttta tccattaaat
    58741 ccaatttagc caataaaaaa atccctcaaa taaaccagat ttccccgttc tatttgaagg
    58801 attttattta ttcttcccca aaagtgggga agaaaagctt aatcaagcag ttactaccac
    58861 tgataaccta cgcttgcagc agcacctgta tcaccacggc tgttagagtt aacactgaat
    58921 ttgataccca ctttaccatt atctgataaa cgagaataac ctacagcaat agctccttga
    58981 ccacggtaag cacctacacc ggctgaaacc atcgatttac caggttgtgt tacgtgatat
    59041 aaattacctg cggctaatgc acctgcaata cctgcacgta agtctttatc tacgttactg
    59101 atacgattgt tcagacgatt ttctgcacct ttcaactgat tcacattaac agcatcagtg
    59161 cctttcacac ccggagcaac gttcgtaata cgtgtttgcg cattcttgct acctgcaatg
    59221 ttaagctcat ttacgccatc ttttgcaaca gttgaactga tagttgtacc accaactttc
    59281 actgaatcaa attcaagatt gcttgaggtt gccacttcaa cagttgaacc tttacgtgaa
    59341 acaacgatgt ttttgccacc tgaaacggcc actttaccat tgttattaac acgttgagca
    59401 cctttctctg aagtttcagc tacattacca tcaacagtga gataccagcc tgtattctgc
    59461 attgcattat acaactggct accgctcaca acatctttac ttgttgccgt tacatcacca
    59521 tctttaacgt tagtgatctt cgtgcctttc gcatcaatac cgcctttagt tacacttggg
    59581 ccgtctttaa tggttaaacc attgttattt acggttgtgt cgccagttgt tacagaacca
    59641 tcttccgtta aatcaattgc tttcgctaat tgtacctcta atgtgtctgt accattcgct
    59701 ttcacattga tgttgcctga tgctgactta aagttttcag aagctgtttt atccacacct
    59761 tcacctttca ctttaacttc agtattcagt ttctgacggt tcttcacatc ttcattgtta
    59821 ccagagaaga ttaaaccatc atttaaggtt gcaacttgtt ctgtgacagt tttaccgtct
    59881 ttatctttgg tctcataaac gatacgagtc ttaccgttct cacccggtaa tccatcttta
    59941 ccatttgtac catcaacacc ttcagcacca tctttcactg caatatttgc acttgcacca
    60001 tctttaccgt cagcgccttt cggaccggtt aagccgatag agccatcttt accgtttaat
    60061 acaacagaag cgccatcttt acctgtagct ccaattgaac catcaacacc gtctttaccg
    60121 tcacggcctg cagtaattgt gccgtcacct ttaatggtta cgccatcttt accgtctttg
    60181 ccagcaatac cgatttgacc gtctttacca tctttaccac caatggttaa gttgtttttc
    60241 aagccgaagg tcacgttatt accttcttta gtaataataa tgttaccgtc tttgttgttt
    60301 agatcaactg ttgctcctgg tttaacgttg cctttgtctt taccatttgc tgttaagttc
    60361 caacctgcgt tagcaacttc ttgcacttga tataactggc taccatttac cgcatctttg
    60421 ctggttgcag aaatttcacc gtcttgaacg ttaatgattt tcttatcgcc tgcattgata
    60481 ccggctttag ttacacttgg gccatctttg atagttaaac catcattatt taccgtagta
    60541 tcaccaatag ttacagaacc atctttcgtt aaatcaatgt ctttcgctaa tttaactgtt
    60601 aacgcaccat tgttgtttac aacaccgata ttgttatcgg acaggttcgt taaatcagta
    60661 tcaccgcctg agatttttaa cgtctcatta agtttcttaa cgatttcttt accgtcatca
    60721 cctacgaatc ttaagccatc gttcagtgtt gcaacttcct cagttgtacc gtctggtttc
    60781 tcataaacga tacgggtttt gctttcgcca tctttaccgt cgttaccgtc aaggccttta
    60841 gcaccgtctt ttacagagat agttgcactt gcaccatctt taccgtcagc gcctttcgga
    60901 ccggttaagc cgatagagcc atctttaccg tttaaagtaa caccaactgt accatctgca
    60961 cctttaacac cgattgaacc atctttacct ggaccgccaa tggtaaaatc gttatttaac
    61021 gtaaagtcaa tcacattatc acttactgtt gtgatgatgt ttttgtcttt agaggtgtac
    61081 ttaacagttt cacctagttt aacgtgatca gtttcaccat tatccgctgc aatgctaaag
    61141 cctttctcga taatatcgtt gcttgcattt acaacatcat taatattcgc agcgttagta
    61201 ccaacttctt ttaattgatc gtctgttaag tcgttcactg aagtgattgg cttaccatct
    61261 ttaccgttaa tgccgtcttt acctgctaaa ccgtcaatac cgctcttcac gttaacaatt
    61321 tggttgccgc cattgtctag accgtcttca gtaagcttaa ctgctttacc atctgtgcca
    61381 tcttttggcg tgatagttac gccattatta tttactactg ttgttggacc tttaccttct
    61441 tgaccattct ctccatcttg tggtttgaat gtagctgagt tcaagtcttt aagatcttta
    61501 gctaattgaa cagataattt accatctttg ctgtttacgc cgatgttatt tgcagttagc
    61561 ttatctttat cagctccacc aatgatttct aaggtttcat tcaatttctt agatactagt
    61621 gttgcatcat cacctttaaa gtgtaaacca tcatttaaag tagctacttg ctctggttca
    61681 cctataggat caccattgcc atctgttggc tgatattgga tacgagttac accatcttta
    61741 cctggtaaac catctttacc aacaagccct ggtttgccct cagtaccttt aatggttaaa
    61801 ccatctttac catttgtacc gttcaagccg attgaaccat ctttaccgtt aagaacaact
    61861 gcagaaccgt ctttaccgtt tacaccgata gtaccatcaa taccatcttt gccagggcga
    61921 cctacagtga tagctccatc tttaccatct aaagcaatag catctttacc gtctttacca
    61981 gcaataccaa ctttacctgg ttcaccatct ttaccaacag taatattatt cactaggcta
    62041 acttctaatg catggccacc atctttctca acaacgtttg ttttaacatt gccatcacca
    62101 atgatcttag ctgtcgtacc taagttttgc ttaaactcct tgttgttctc atcttttaga
    62161 ccaaacgcat ctgttgtcac ctcagtaaca gtctcagtaa cagtattttt caagtcaccg
    62221 acgttaaccg cattgttaag aacatcacct gctgcctcag taagtttaac aggttgacca
    62281 tctttacctt ttaagccgct atcaacattg gtgatttggt taccaccgtt gcttaagcca
    62341 tcctctgtta aggtaacatt agatttagtt gcatcattag gatctttctt agcaatcgtt
    62401 acaccatctt tattgataac tgtagaatca ccttgtgtgc cgaatgttgc actatctaag
    62461 cctgctagat cttttgctaa cgccacagta atggtattgc caacaacctg tgtcatgata
    62521 tttttaccag catcaaactt agcccaatca gtgtttgttg tagcaccttt aatatccacc
    62581 tgcgtattta atttcgcatc gtgaactttg ccatcattcg caccgaattt taagccatcg
    62641 ttaagtgttg caacttcttc tttatcacca tttggttttt cgtaaacaat acgagttttg
    62701 ctttcgccgt ctttaccgtc gttgccgtca agacctttag cacctttctc aactttaatt
    62761 gatgctttac catcttttcc atcttttcca tttacgccat caacgccgtg gaatacgatg
    62821 gcttctggtt taattgttac accatcttta ccatcagcac ctttaacacc aactgaacca
    62881 tctttacctg gtttaccacc aacagagatg ttatcggata agccaaaatc gatggtatta
    62941 tttgttacgg ttgtaacaac attcttatcg gttgaggtgt acttaacagt ttcacctaac
    63001 ttcacattgt cttctttagc accacctcct aagccagagt gatccgctgt aatgttaaag
    63061 ccagttttaa ctaaagtgtc agctactgcg taaagttgtg aaccgttaat cgcatctgtt
    63121 gaattggaag caattttacc cggtgcaaca aacttaattt ggcgagcatt ggttgcatta
    63181 cccacactca cataatcacc atcaacaaca ttttcatcgc cagcaaagct gctatatttt
    63241 aatgtgccaa cagttgcagt atcttcttta gttgcggttg cttcagtaga gtcagaacct
    63301 agaattacag aaccctttgt cttaacagta acattagaac ctaatacgaa agtatcttta
    63361 cctgaaactg tattgttata acctaaagcc gcagcacgaa tacccgaaac agtactattt
    63421 acaccggctg caattgagtt tttacccttt gcggttgagt tgtaagcaat agcagttgca
    63481 taattacctt ttgatttggc ctcaaaacca attgctgtgc caccttcatg cgtaatattg
    63541 gcacgtgtac ctactgctgt cgcattcgcc ttacttacat tagcactata acctatcgca
    63601 acagaattat taccacttga attagccgta tcaccaattg ccattgcacc atctttgctc
    63661 gcgttagaat gcgaaccaat actgatcact ttttctgcat gagagtttgc attccaacca
    63721 atgctaatag cattactttt ccaggcttta gaagcattac caaaagcaat cgcaccgatt
    63781 cctgttgtat tcgaatttac accaaaggcg atagaaccat cacctgttgc acttgcattt
    63841 gttgaaaacg ccaaagtatc attcgaattt gcacgagtat tcgtacccaa agcaaatgca
    63901 ttatttgcta ctttcgctgt atcaggatta attacctgtc ctaattcaga aatatttgaa
    63961 ttctctaatt taaagccacc ggaccaagcg ttagtaccaa tggcaaatga atggttacca
    64021 ttagttttcg ctttagtacc gattgagaat gcatctgttc caaatgctaa agtattattt
    64081 tgcccatcat aaattgaacg tctattttca tgaccgtaac ttccatccac tgtctgtgga
    64141 gtaccactac caatcgcaaa agaacggtca cctagcgctg tagccgaagc accaatggcg
    64201 aagctagctg tagcatttgc ccaagatgtt gaaccaattg cagtagaata atctgcaatt
    64261 gcagcagatt gacgcattgc agcaaatgag ttaaatcctt ccgcacgtgc agaggtacct
    64321 aatgctacag aaccaatact tgcagtacga gaaaaagaac caattgcaat agacaatccc
    64381 cctccagaat atgaataatc accaatggct atgcctgacg ctttcggttt tcctctactt
    64441 tttctgttat tgtctaaagc tacagcattg tgtccaatta caattgctga ggtagtatta
    64501 gacttataca ataatctaga atccttctcc ttattaacag agttattaga ttcttgaagc
    64561 ttagttctgt ctgcatagga taagctacct gggttaaagt agttatatgg attcgtaata
    64621 gaatctgtag ccaaactagt gtttgtataa atatctatac caccattaac aacttttttt
    64681 ggtgcttttt gttgtacttc tattctatca ataatcaccg ccgcttctgc cggtgtagca
    64741 gaaagcataa aggctgccat tccactgata agggttgctc cccctagaat gctagccgct
    64801 gctaatttaa tagtaccgcg cttatcagta gaagaagcgg ctttaccttg cgatcgagca
    64861 agttcagaca caacttccat tttttgcgtc gtttggttaa aaataacctt aaatattttg
    64921 ttcataattt tataccttta gaattattat aaagcttact tcgtaaataa ttc
//
LOCUS       DANLXK010000002        49671 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.002, whole genome shotgun sequence.
ACCESSION   DANLXK010000002 DANLXK010000000
VERSION     DANLXK010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 49671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49671
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            51..2350
                     /locus_tag="PXD88_000067"
                     /pseudo
     CDS             51..2350
                     /locus_tag="PXD88_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2428..3129)
                     /locus_tag="PXD88_000068"
     CDS             complement(2428..3129)
                     /locus_tag="PXD88_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL6279696.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3134..4543)
                     /locus_tag="PXD88_000069"
     CDS             complement(3134..4543)
                     /locus_tag="PXD88_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL6279697.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4545..5276)
                     /locus_tag="PXD88_000070"
     CDS             complement(4545..5276)
                     /locus_tag="PXD88_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL6279698.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5420..7024)
                     /locus_tag="PXD88_000071"
     CDS             complement(5420..7024)
                     /locus_tag="PXD88_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL6279699.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(7314..8405)
                     /gene="ychF"
                     /locus_tag="PXD88_000072"
     CDS             complement(7314..8405)
                     /gene="ychF"
                     /locus_tag="PXD88_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL6279700.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(8591..9178)
                     /gene="pth"
                     /locus_tag="PXD88_000073"
     CDS             complement(8591..9178)
                     /gene="pth"
                     /locus_tag="PXD88_000073"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL6279701.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(9251..10126)
                     /locus_tag="PXD88_000074"
     CDS             complement(9251..10126)
                     /locus_tag="PXD88_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL6279702.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            10348..11928
                     /gene="prfC"
                     /locus_tag="PXD88_000075"
     CDS             10348..11928
                     /gene="prfC"
                     /locus_tag="PXD88_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL6279703.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            12187..13761
                     /locus_tag="PXD88_000076"
     CDS             12187..13761
                     /locus_tag="PXD88_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6279704.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            13981..14913
                     /locus_tag="PXD88_000077"
     CDS             13981..14913
                     /locus_tag="PXD88_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6279705.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            14923..15705
                     /locus_tag="PXD88_000078"
     CDS             14923..15705
                     /locus_tag="PXD88_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6279706.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            15794..17206
                     /locus_tag="PXD88_000079"
     CDS             15794..17206
                     /locus_tag="PXD88_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6279707.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(17293..18036)
                     /gene="rlmB"
                     /locus_tag="PXD88_000080"
     CDS             complement(17293..18036)
                     /gene="rlmB"
                     /locus_tag="PXD88_000080"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL6279708.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(18091..19458)
                     /gene="pssA"
                     /locus_tag="PXD88_000081"
     CDS             complement(18091..19458)
                     /gene="pssA"
                     /locus_tag="PXD88_000081"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL6279709.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            complement(19528..21075)
                     /locus_tag="PXD88_000082"
     CDS             complement(19528..21075)
                     /locus_tag="PXD88_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL6279710.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            complement(21200..24016)
                     /gene="ileS"
                     /locus_tag="PXD88_000083"
     CDS             complement(21200..24016)
                     /gene="ileS"
                     /locus_tag="PXD88_000083"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL6279711.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            complement(24119..25081)
                     /gene="ribF"
                     /locus_tag="PXD88_000084"
     CDS             complement(24119..25081)
                     /gene="ribF"
                     /locus_tag="PXD88_000084"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL6279712.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            25305..26579
                     /gene="nadR"
                     /locus_tag="PXD88_000085"
     CDS             25305..26579
                     /gene="nadR"
                     /locus_tag="PXD88_000085"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL6279713.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
     gene            26597..27289
                     /locus_tag="PXD88_000086"
     CDS             26597..27289
                     /locus_tag="PXD88_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6279714.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            27422..28144
                     /gene="arcA"
                     /locus_tag="PXD88_000087"
     CDS             27422..28144
                     /gene="arcA"
                     /locus_tag="PXD88_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL6279715.1"
                     /translation="MKIPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLS
                     TNEINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEV
                     NKLPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHP
                     NTPEIIVTIHGEGYRFCGNIEP"
     gene            28164..28682
                     /locus_tag="PXD88_000088"
     CDS             28164..28682
                     /locus_tag="PXD88_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL6279716.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(28760..29989)
                     /gene="serA"
                     /locus_tag="PXD88_000089"
     CDS             complement(28760..29989)
                     /gene="serA"
                     /locus_tag="PXD88_000089"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL6279717.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(30026..30685)
                     /gene="rpiA"
                     /locus_tag="PXD88_000090"
     CDS             complement(30026..30685)
                     /gene="rpiA"
                     /locus_tag="PXD88_000090"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL6279718.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(30830..32164)
                     /gene="glmM"
                     /locus_tag="PXD88_000091"
     CDS             complement(30830..32164)
                     /gene="glmM"
                     /locus_tag="PXD88_000091"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL6279719.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(32190..33722)
                     /gene="ilvA"
                     /locus_tag="PXD88_000092"
     CDS             complement(32190..33722)
                     /gene="ilvA"
                     /locus_tag="PXD88_000092"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL6279720.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(33983..34576)
                     /gene="slyD"
                     /locus_tag="PXD88_000093"
     CDS             complement(33983..34576)
                     /gene="slyD"
                     /locus_tag="PXD88_000093"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL6279721.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(34679..34819)
                     /locus_tag="PXD88_000094"
     CDS             complement(34679..34819)
                     /locus_tag="PXD88_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279722.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(34891..35577)
                     /gene="aqpZ"
                     /locus_tag="PXD88_000095"
     CDS             complement(34891..35577)
                     /gene="aqpZ"
                     /locus_tag="PXD88_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL6279723.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
     gene            complement(35765..36484)
                     /locus_tag="PXD88_000096"
     CDS             complement(35765..36484)
                     /locus_tag="PXD88_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL6279724.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
     gene            complement(36542..37279)
                     /gene="tsaA"
                     /locus_tag="PXD88_000097"
     CDS             complement(36542..37279)
                     /gene="tsaA"
                     /locus_tag="PXD88_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL6279725.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            37459..38367
                     /locus_tag="PXD88_000098"
     CDS             37459..38367
                     /locus_tag="PXD88_000098"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL6279726.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            complement(38443..39429)
                     /locus_tag="PXD88_000099"
     CDS             complement(38443..39429)
                     /locus_tag="PXD88_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL6279727.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(39523..41394)
                     /gene="rpoD"
                     /locus_tag="PXD88_000100"
     CDS             complement(39523..41394)
                     /gene="rpoD"
                     /locus_tag="PXD88_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL6279728.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            complement(41653..43401)
                     /gene="dnaG"
                     /locus_tag="PXD88_000101"
     CDS             complement(41653..43401)
                     /gene="dnaG"
                     /locus_tag="PXD88_000101"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL6279729.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(43555..43770)
                     /gene="rpsU"
                     /locus_tag="PXD88_000102"
     CDS             complement(43555..43770)
                     /gene="rpsU"
                     /locus_tag="PXD88_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL6279730.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(43918..44514)
                     /locus_tag="PXD88_000103"
     CDS             complement(43918..44514)
                     /locus_tag="PXD88_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL6279731.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            44656..45912
                     /locus_tag="PXD88_000104"
     CDS             44656..45912
                     /locus_tag="PXD88_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL6279732.1"
                     /translation="MHLNFKKIDNSHIALFYNVLVATFFVTVLTFKKGYSYVPMALGI
                     IATLSFLFYRFKLKQKWLLDKEDKFFIFSLIGYFLTFAMSAIFNGDGIREIDNPIQIL
                     LLIPLIILFRLYPIKKETVLHFIPIGALVAGCIAIYQRFILNLKFPFPEIMRIQSGNI
                     AILLSLFSIAIAFYWLSKKRIKTGIAYLVFAMFGLFASILTGARGGWLAFIPICFFIL
                     FLNLRQLNKKAIFLILLALISSLSFFISKPEFGIQKRYNAAKNDIIVFLEKGNRHSSL
                     GARFDMWENALIGIREKPLLGHGSTGYETFKKKQIETKQMAKTTLRFNSLHNQYLEAF
                     VKRGVVGFMALMAILIIPFVIFAKRLKAKNREVKCMAILGIVHIISHSFFFLSQSFLA
                     HNSGSLFYFFVLILLYHLVKQNEEII"
     gene            complement(46014..47021)
                     /gene="rfbB"
                     /locus_tag="PXD88_000105"
     CDS             complement(46014..47021)
                     /gene="rfbB"
                     /locus_tag="PXD88_000105"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL6279733.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
     gene            complement(47018..47599)
                     /locus_tag="PXD88_000106"
     CDS             complement(47018..47599)
                     /locus_tag="PXD88_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL6279734.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYLRDKDEYVGIHIYFKNSSNFYYPW
                     ELQIWDKKDAEKNIQSHIKYKRNFVNQISYSPL"
     gene            complement(47620..48891)
                     /locus_tag="PXD88_000107"
     CDS             complement(47620..48891)
                     /locus_tag="PXD88_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL6279735.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     DFYYIKHFSLWLDILIIFKTLKTMLTGFGAR"
     gene            complement(48895..49671)
                     /locus_tag="PXD88_000108"
                     /pseudo
     CDS             complement(48895..49671)
                     /locus_tag="PXD88_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT        14412 a        11064 c         9492 g        14703 t
ORIGIN      
        1 ttcattgcca ttattttttt atggctattt attctagaag gactctaaac gtgttaaaga
       61 aaaattatct cactgtatca attctccttg ccattagtgg agtaggctac gctaatgaaa
      121 tctctttaga gactattact gttgatggaa atacgccttc aaccaaaggg aaattactag
      181 gtggtgaact aaatagcaat gaatctgttg ttgatgaaaa aaattaaaac aaggtagtat
      241 tacattaggt aacgctttat ctggtgaatt aggcattcat tcaagccagt tcggaggcgg
      301 tgcaagtacc ccaattattc gtgggcaaga gagtaaacgt gcaaaaatct tacaaaataa
      361 tggcgaaaac ttagatatgt cgggaatgtc tcctgatcat gcagtaaccg tagatgcgct
      421 acttgctaaa cgtattgaaa ttttacgtgg tccaactact ttactttaca gtgcaggtaa
      481 tacggcaggt gtaattaatg tggtagacaa taaaattcca accgctattc ccgaaaaagg
      541 ctatgagggg caatttggtg tgcgttttgg ctcagccagt aaagagcgtt taacctatgc
      601 aggctcaacc tttgcccttg gaaatcattt agccttgcgg gtacagggaa tgtataacaa
      661 agcttccgaa tactatgctc cacactttac gattgaaggc aaaccttacc accgcgtacc
      721 agatagcgat gtacaatcac aaaccggcac agtaagcctt tcttggattg gagagcgagg
      781 acatcttggt attgcttaca ctgatcgccg tgataaatat ggattaattg gtcacacaca
      841 caaatacgat cactatacta ttagtattat tcgccaagcc gttatgtttg caaaaggtta
      901 tttacgtttt tatccgcacc ttgcagaaga aggagatatt gactataaca accctggtat
      961 ccgtttactg catactcata ttccgggagg ctcacattat ggacaagata ctcacgagca
     1021 cggcaaacct tggattgata tgcactccaa gcggtatgat attgatggaa gtttgcaaaa
     1081 tccacttcct ggttttgaag aagccaaaat atcagctaac tatgtagatt actatcatga
     1141 tgaaaaagat ggaaaaagag ttgaaaatta cttcaagaac aaaggaaaaa atctacgttt
     1201 cgaattggtt cacaaagagt ggaaagggct aaaaggagct attggtgtgc aatataccaa
     1261 ccaatctacc tcagcacttg cacttgaagc ttcacgagct gcaaaagtat ttaataaaca
     1321 gcctttactc aataatccaa aaacaaaatt atggagtctc tttgcgattg aacgccttaa
     1381 tttaggtgac tttacctttg agttaagtgg gcgggcagaa cgtcaaaaaa tagcaatgga
     1441 ttatgatgtg aaattaattg atcgctggct aggctttaat acacctatgc caaacttgga
     1501 cccacataaa gacaaaggtt attcttatag ctttgcaact cattggtatt tcgcaccaaa
     1561 ccataagtta acattaaatg ctgcacatca agaacgttta cctaatgctc aggaactcta
     1621 tgctcatggt aaacacattg ctttaaatgc atttgaggct ggcaataaaa atctaaaaaa
     1681 agagcgttct aaccaaattg agctatcatt agcttatgtt ggcgacaaat gggattataa
     1741 attaaatctc taccacaccc gctatggcaa ctatatttac ccattaactc ttaatgataa
     1801 tcgtggacct aaatctttta ccgatgaata taacttgaaa gtgaatagat attatcaagg
     1861 cgaagctcgt tttagtgggg cagaaggcga aattggttat ctatttacac caaattatcg
     1921 cttagccgta ttcggagact atgtccgtgg aaagttagtc aacttaccta atattgcaat
     1981 gagttacaac atttggacag gtgaagttga caaatgggct tctcagccag acatttctgc
     2041 acctcgtata ccaccactac gtttaggagc aagatttaat gctgacttca acctaaactg
     2101 gtctggaatg ttagaatatt accgagtatt tgctcagaaa aaagtctcga aatacgaaca
     2161 agttacccct ggccatcatc aagtaaacct tggcgtaacc tatagtaatc attttaatca
     2221 aacagaatac caagtattcc ttaaagtgga taacttgctt aatcagaaaa tgtaccaaca
     2281 tgcctcatat ctaccacata ttccacaaat gggtagaaat gcaatgcttg gaatgaatat
     2341 cagtttttaa tttgtaaatc tctacaaaaa tataaccgct tgtaaatttc tatctacaag
     2401 cggttacttt cagtggattt tttgcaatta gagatcgtca attaccaagt aaattttatt
     2461 taccgggccg tgaacgccaa ctactttaat caactcaata tccgcagtcg ccgatgggcc
     2521 tgagatgata ttcacacaag atggcattct ttcacctcgt tgggcttttt cgtgcagaat
     2581 ttgtgcaagc tgtgccacac gaggtaacac tgtacttttg cgtaacacaa ccaccgattt
     2641 ttcgggcaat aagctcactg aacgcccaaa ttctttatcg gaaaacagta caataccgcc
     2701 agactctgcc aagccatatt caccgtaaac cacaccgata ttagcagttc tggctttttc
     2761 aaagttggtt tcagcttggt tgaaatccca cacatagctg tcttcgtatt ttgcttgaat
     2821 ggctgcggta atcccaagat cctttaaacg ttgatcgtta ttcacgatca cactcgcccc
     2881 gccatatttt tcacaaatat caataatggc ttgtggtaaa tccgcctctt ttgcctctac
     2941 tacatctgcc atcatcactc gggcaaaatc gataaactct tggcaaagtt gtggttgagg
     3001 gcgatcggtt aaacgggtaa tcgcgtggtt gttttccaac acaggaattg gctcaggcac
     3061 attttggcgt ggtctgccca tacgctgtgc caatttattt aagaaatttt cacgattttg
     3121 taaatccatt ttcttatcct ctgttattaa accattcacg gaaactttcg ccttcggcag
     3181 tcggtaaatc acgggctttc gtccattcac ctaacgcccc aaaattcacc ggtgctttgc
     3241 cgtttttaat caatttgctt gccactttcg cccccacttt tacgccgact ttccaaaggg
     3301 ttgggtgtga gttagcgaag ttaaagccaa aaatagacaa gcgttctgcc attggcgtta
     3361 agccggcatc cgcaattttc tcacggtgtt ttaagataag ctgtgccagt ggaattttca
     3421 ctggacaaac actgttacaa gcggtacaaa gtgagcaagc atacggcaat tctttaaact
     3481 cttcgtagcc accgagcaat ggcgaaataa ctgaaccaat cgggcccgga tagattgaac
     3541 catagccgtg accgccaatt tggcgatacg ccgggcaagt gttcaaacat gcaccacagc
     3601 ggatacaacg caacacttct tggaattcgc tttctaagat tttagaacga ccgttatcga
     3661 caatgaccaa gtggaactct tccggaccat cggtttcgcc ttcaagtcta ggacctgtca
     3721 gccaagtgtt gtaagcggtg agttttgccc ctaccgcact gcgagccagc atggtaatta
     3781 atacatcaac ctctttaaag gttggggcga tacgttccat acccattact gcaatatgcg
     3841 ttttcggcac agttgttgcc atacgcagat taccttcgtt ggtcactaaa caaaccgagc
     3901 cggtttccgg caccgcaaag ttacagcctg aaataccgat gtctgcctct aagaaatctt
     3961 cacggatttt ttggcggacg aatgcagtca tctcttcagg tgtttccgaa ccttgataac
     4021 ctagcacatc gtgcatttct tggcggattc tgtggcgatc tttgtggatt gcaggtacaa
     4081 caatatgaga aggtttatcg cccacaattt gcaataaata ttcgcccaaa tcggtttcaa
     4141 ccactttaat gccttctgct tctaaaacgt ggttcatccc aatctcttcg gttaccatcg
     4201 acttcgattt tacgattttc ttcgcatttt tagctttcgc cacgtttttg atgtaatcag
     4261 tggcttcttc ggcggtttcg gcaaagaaaa cgtgtccgcc gttttgggtg actttttcgc
     4321 ttaattggta gagataagcg tctaaattgg ctaaaacgtg gttacgaatt gctttcgcat
     4381 catcacgcca ctcttcccag ttgcccagct catccaccat acgctgacgg tttgcaccga
     4441 ttgtttcctg agccttaact aaggctttac gcacaatctc gttattaact tgctgctcaa
     4501 cacgttgttt aaacggcagg gtgttagttt gtaaataaga catcttattt tcctccctgc
     4561 attaacactt cggcaatgtg catcactttg attggcttac cttcacggct taaacgaccg
     4621 ccaatgttca tcaagcagct tacatctgcc ccgattaaat aatccggctc atcggtatct
     4681 acatttgcga ctttctcttt taccatctcg ccggaaattt ctgccatttt gaccgagaat
     4741 gtgccaccaa aaccacagca agtttcttgg tttttgattg gtaataactc taacccttta
     4801 acgtgctgta ataaagcaat aggctcatct ttaatcccca gcttacggaa taagctgcaa
     4861 gacgggtgat aaactgcttt gcccggtaaa taagccccaa catctttcac gcccagtttg
     4921 ttcacaataa aatcggttaa atcatagaaa cgatcagcca ctttcttcgc acgttctgcc
     4981 cattcttttt cgccaaagcg ttcaaaatga tccggatagg ttttgatcgc atatacacaa
     5041 gaacctgccg gggcgacaat cgggtaatca ttagcttcaa aggtttcaac caagtttttc
     5101 atacctgcta aagcttgctt agtgtaaccg ctgttgatcg caggttgtcc acagcaacct
     5161 tgtttttcta agaaagtgat tttacaacct aatttttcca ataaaagcac agtatttttt
     5221 gcaacccctg ctttcattac atctgcaatg caggttacgt aaaaattaac gttcataaag
     5281 aactcccaca gtaaatataa ataagaatta aactcaaaaa atgccgttct aagacggcga
     5341 aaggaagagg tggatttgca aaaaatttgc taaatctcac cgcttccttt ctaaatcaag
     5401 taagctgatt attaactcat tataggttat agaacatagg tactataaac aatgccgaaa
     5461 tcgcagcaat aacgccatac acgaacattg gcacggctgt tttcttaata atattgcctt
     5521 cttgtttctc aatgccggta acagaacaca cagccacgat gttgttaata cacaccatat
     5581 tccccattgc accaccaact gattgcaatg caagaattaa ggtaacagat aacccgactt
     5641 gctgtgccgt tgcatattgt actgttccga aggttaagtt agataccgta tttgaccctg
     5701 agaagaacgc accaattgca cctaagaacg aggcaaataa tgtccaagat tgaccggtaa
     5761 attctgcgaa gtttttacca atgatctgaa ccattgagtc tacaccacca attaacatta
     5821 attttaccat cacaatggca cctaaaagtg ctaagaatgg ttttttcact tgtttaaatg
     5881 aagtgccaaa aatctcttga gtatttttac ctgataccga gaaaatcggt aagcaaatta
     5941 atacggtcac aacaaatgga atcaacgcag gaacatacag taatttatag ctagttgcta
     6001 cattcgtacc taaaatattt ttcagtgcaa aaattaagcc ttggctaatt tcaaagttag
     6061 cgaaaccaag cgaactgaca atccaagctg ttgcatcatt tagcattgct tttaatggaa
     6121 gttgctgaat acgggtgatt accaaaatga agatcagtaa ccctgttggt aataatgctt
     6181 ttgccacttc accaaaggtc gctttatcgc cgtcaaggtg gttctcgctt ttcgctaaac
     6241 caatacccat atttgctacc cagactgaca ccaataaacc aatcgccccg gcaactaatg
     6301 atgggaattc gtagttaaat tgagcaataa tgaagtaagg aatgacacag gcaaaaatgc
     6361 tgatataaat aaacacgata ttttgacgaa tttctttcca gctcacaatt aaacgcaatg
     6421 ccataactgg aataataaac gcagcaatag agtggatcag tgcagtaata gaaccaattt
     6481 caagcacttg tgcatcggtt agtaaaccat cttttaataa tggtcccata ccaaaccaag
     6541 ttggtgtgcc aaccgcacca aatgacaccg gcacagagtt cattactaag gctaacattg
     6601 ccacttgtaa cggtttaaag cctaaaccaa ccagaattgg agctgcaatt gccgccggcg
     6661 taccgaaacc tgatgcgcct tcaatcataa atgcaaatgc ccaaccgata atcatcaact
     6721 gtgccaccgg attcgggtta attgtcccta accatttacg catagtgttg gttgcacctg
     6781 aaacttcaga gaaacggtta aataaaatcg ccccgaaaat aacggtaatt ggggttaata
     6841 catcacctaa accggcaata atattggcaa agattaacgt ggtatcatta ccaaaatagg
     6901 taagctgaag cacaaaaatt aataacgccg taagtggtaa agccacataa gacggtaacg
     6961 cgttacgttt taccattaaa taaatgagca aaacaattgg aaatacgctc aggaatagag
     7021 ccatactgca cctctttata tgattataaa atgacctaac tggtcggata ggtgcgaatt
     7081 gtactcttaa aaaaaactaa tgtaactagg ttgttacaat tttgtgatct agctcgcatt
     7141 tttaatgatt gtatggttaa aaaagagcca tatttatttt catttaatac ttaatagtta
     7201 gccctattta agacattttt accgaatcga gcaatatgca attaattaac aaaaaaaggc
     7261 cgcttgtaga tcacagatca acaagcggtc ttttttaggc aaaaatttgc aaattaaaca
     7321 ttgaaacgga agtgcattac atcgccgtct tgaacaatat aatctttacc ttccaaacgc
     7381 catttacccg cttcttttgc accggcttca cctttattgt ctatgaagtc ttggtaagca
     7441 attacttccg cacgaataaa gcctttctca aagtcagtgt gaatcacggc tgctgctttt
     7501 ggagcggttg cacctaccga aaccgtccac gcacgcactt cttttacccc tgcggtaaag
     7561 taggtttgta agttaagtaa acggtagcct gcacgaataa cacggtttaa gcccggctct
     7621 tcaatgccta aatcttgtag aaattccact ttttcttcgt catcaagctc ggcaatttcc
     7681 gattcaatcg ctgcacacac cggtacaacc accgcccctt ctttttcggc aatttcacgc
     7741 acacggtcaa gataagggtt attttcaaaa ccgtcttcgt tcacgttggc aatatacatt
     7801 gtcggtttta aagttaagaa gttgtagccc ttaatagcgt gcagttcatc cttatctaaa
     7861 tctaccgaac gaatcatacc ggcattttca agcacaggta ggattttttc cataatcgat
     7921 aattcaaatt ttgcgtcttt atcgccacct ttcgcacgtt tttgtaaacg ctgaatggca
     7981 cgctcgcaac tgtctaaatc ggcaagtgcc aattcggtat tgatgatttc aatatcatca
     8041 gctgggtcaa ttttccccgc aacgtgaacg atgtcatcat tttcaaaaca acgcacaacg
     8101 tggccaatcg catcagtttc acgaatattg gctaagaatt tattacctaa accttcgcct
     8161 ttgcttgcac ctgccactaa gccggcaata tccacaaatt ccattgtagt tggtaacact
     8221 cgctcaggtt tcacaatttc cgccaacgca tctaagcgag ggtcaggcat tggtaccaca
     8281 ccggtatttg gctcaatcgt acagaacgga tagtttgctg cctcaatacc tgctttagtt
     8341 aatgcattga aaagggtcga tttaccgaca tttggtaaac ccacaatacc acatttaaat
     8401 cccatttttt gttccttaga attcccctct ccccttgcgg gagagggata aatttgagct
     8461 tcgttcagaa gcgaaaatga gggagagggc gaaattgcaa taatttcctc aaatatgacc
     8521 gctcccctct ctctgaaaaa tacttctgaa cgaagtattt ttcggtctct ctcccacaag
     8581 ggagagagtt ttaatttgct ttaaaactat ttaaacggtt agttgcctta accattccgt
     8641 ctttaaataa aacttctacg caacgtgcgg cttcatcaac cgcactattc agtaatgtct
     8701 gatcgcttgg tgaaggcttg cccagcacat aattcgccac taagtcttta tgccccgggt
     8761 gtccaatacc aattcgcaca cggtaaaact ctttattatt gccaagggcg gcaataatat
     8821 ctttcaagcc gttatgacca ccgtgtccgc cgcctttttt caatttcacc gaaccgggtg
     8881 gtaaatccaa ttcatcgtga gcgaccaaaa tttcttccgg tttaatccga taaaaattgg
     8941 ctaacgctcc cactgcttta ccacttaaat tcataaaagt agtcggcact aataaacgga
     9001 cttcgccttg agcggtatta atttttgcta ctttgccaaa atatttcggc tcttctttta
     9061 ggctaacgtt atatattcgg gcaagttcgt taatcagcca ctcgcctgca ttatggcggg
     9121 tttcttcata ttttaccccc gggttcgcca gcccgacaat taatttaatt tctgacacaa
     9181 tcttgtctca attcatttaa tttaaaaggc agtattttag agaaaaaccg ctattttctc
     9241 aaggcaacca ttaatcatat tgtctatacg gatttggtac gcattgatac ttcgctaaca
     9301 tcgattcagt gaaatcggtg cgtgaagcag cgttatcatt gtttaaacta accacaccaa
     9361 ttcgcttgcc tctgcaatcc cctttagcaa taaaggcaag attataaccc gcctcacggg
     9421 tataacctgt cttactcact aatgcctgat aggattggga acgaaccata ctgttggtgt
     9481 ttttcataga gaaataacga ccacctgcat aaacactcac taatggcgaa ttagacaatt
     9541 gctgaatttc aggcttactt gccgcatagc ctgccaattt agcaagatca accaccgttg
     9601 aaacattatc cgaagataag cctgagctat caccaaagta ggtttgagtc ataccgattt
     9661 cacgggcttt gctgttcatt cgagccaaaa attgggcttt attcaaatgt gttgcgtggg
     9721 caagggcgtg agcggcatag ttatcggagc gaactagcat cgcttttaac aattcactac
     9781 aggcaatgtt aagatttttc ggcaatgggc tggtcgtgcc ttttaagaaa tcagcatctg
     9841 acggcaaaat ttgggtttgg caactcgccc catagcggtt ttcttctaag aaaacgactg
     9901 ctgtcattaa ttttgtgacc gaagcaatcg ggcgaactaa attgaaattc ttaccttcca
     9961 aaaatttctt ttggtttaag tcaaacacca cataagcgga attttcggtt ggaatataag
    10021 cagcggttgc tttaatccgt ggtgtgcttt tcctttttgc cggctgggag gaacaggcgc
    10081 ttaacaccag agccgcaatc ataacaggaa taaatttttt catcataata gattcatcga
    10141 taataaagtc aaagctggtt attctaccct gtttccaaaa ttgtgccaaa gcaagcggtc
    10201 gatttttaca aaatttttgc aaatctagcc gattttgcaa aatttccgcc aaatttaacc
    10261 gcttgccctc tcgcctcaaa tcagcgaaaa taacgcttaa ttttttggcg gactttccgc
    10321 cctttttatt ttaattggtt gagaaaaatg tcatacccac aagaagttaa taaacgtcgc
    10381 acctttgcga ttatttccca ccccgatgcg ggtaaaacca ccattaccga aaaagtattg
    10441 ctctacggaa atgcaatcca aactgccggc tcggtaaaag gcaaaggctc ggcacaacac
    10501 gctaaatccg actggatgga gatggaaaaa caacgtggaa tttcgattac cacctccgtg
    10561 atgcagttcc cgtacaatga ttgcttggta aacttactcg atacaccggg gcacgaagac
    10621 ttctcggaag atacttatcg tactttgact gcggtagata gctgcttaat ggttatcgac
    10681 tcggcaaaag gggttgagga acgcaccatt aaattaatgg aagtgacccg cttgcgtgat
    10741 acgccaatcc taacctttat gaacaagcta gaccgtgata ttcgtgaccc gatggagctg
    10801 ttagatgaag tggaaagcgt gctgaaaatc aaatgtgcgc cgatcacttg gccgattggt
    10861 tgcggaaaat tgtttaaagg ggtatatcac ctttacaagg acgaaaccta cttataccaa
    10921 accggacaag gtcataccat tcaagaagta cgagtggtta aaggcttaaa taatccggaa
    10981 ctggatcaag ccgttggcga tgatttagcc cagcagttgc gtgatgaatt agagctggta
    11041 caaggcgctt cgcacgaatt cgatcacacc gaatttatca aaggcgagct gacaccggtt
    11101 ttctttggca ctgcactggg taacttcggg gtcaatcatt tccttgacgg tttaaccgaa
    11161 tgggcaccgg caccacaagc ccgtcaatcg gacgaacgtg aagtttcacc aagcgaggaa
    11221 aaattcagcg gtttcgtatt taaaattcaa gcgaatatgg atccgaaaca ccgagatcga
    11281 gttgctttta tgcgtgtcgt ttcaggtaaa tatgaaaaag gaatgaagct taaacacgtc
    11341 cgtatcggca aagatgtggt gatctccgat gccttaacct ttatggcggg cgaccgttca
    11401 caagccgaag aagcctacgc cggcgatatt atcggcttgc acaatcacgg cacgatccaa
    11461 attggtgata ctttcaccca aggcgaaaat ttcaaattca ccggtattcc gaacttcgcc
    11521 cctgagctgt tccgccgaat ccgcctgcgt gatccgctca aacagaaaca actgctcaaa
    11581 ggcttggtac aactttccga agagggtgcg gtgcaagtat tccgtccgtt aatcaacaac
    11641 gatttgatcg tgggagcggt tggggtgcta cagtttgatg tggtggtttc acggctgaaa
    11701 accgaatacg gtgtagaggc aatttatgaa accgtaaacg ttgccacagc ccgttgggtc
    11761 gaaggcaaag atgccaaaaa atttgaagag ttcaaacgca aaaacgaggc aaaccttgcc
    11821 ctagacggcg gagacaacct cacctacatt gctccgacaa tggtgaactt aaacctcgcc
    11881 caagaacgtt accctgacgt acagttcttt aaaacgagag agcactaaaa ccaatagggg
    11941 cgaaaaatct ttcgccccta caaataaagc acaagcggtc aatttttttt ccgaatttta
    12001 caatactagg cattctgttc ctcaaatagc ctaaatattc ccctatcaac aatccttatc
    12061 ttgagattat tctgcctatt aattaaccac tcaaaaatac cctcgcagaa aactctactt
    12121 tttttatgga aatatgctaa agttcgccaa tattcatagc cctgattttt ttatggagaa
    12181 aataaaatga aaaaatggtt gattccatta actgtcgcag cgttctgtgt ttctgcttgc
    12241 gatgataaga acagcactca agcaaccgca gaaaaaccgc aagtagagaa tactcaatcg
    12301 caaaaaaatg cggaaatatt accgcttgca accgtggttg ccccatggga aatcaatagc
    12361 cttgacccga atcaatcagg cgtaattttc cagcgtatga acttagcgga aacattggtc
    12421 gaagccgatc ttaacgggaa tttaattccg gcattggcca ctgactggcg cagtaacgaa
    12481 gagggaacaa tctggcgttt taccttgcgt gaaggggtaa aattccataa cgatcaagta
    12541 cttaccgcac aagcagtggt aaatagtttg aatatcgcaa aaagcaaacc gggtgtgtta
    12601 gcaaaagcct ttatcaagga aattcgagcg gtagataaca aagtggaaat tgagctaact
    12661 aaagcttttg tgccgtttcc tcccttttta acacactaca ccgccttaat tttggcacct
    12721 gaaagctata atgaaaaagg cgaagtgacc caaattatcg gtacaggtgc gtttaaaccc
    12781 acaaaaattg aagctccgca gaaattggaa gcggtgcaat ttgagggcta ttggggcaaa
    12841 aaaccgcaag ttcagcaagc caattattta gccagcagcc gtagcgaaac ccgtatgtta
    12901 atggcacaaa gcgagccgtc atcactggta tttaatttag ataccgccag tgtagcaagg
    12961 ctgaaagccg atcctaacct gcaattagtc agcggatcta ttgcccgtac tattcagttg
    13021 aaaatggacg tggcaaagcc gttttttaac gacttagcga ttcgccaagc cttatcgcaa
    13081 gcgattaatc gcaaggcgat tgctgagcag gtcttaaaaa ttgagaacgg agctgccgat
    13141 caaattttac cgaaagcctt tgccgactgg cgtgttgata ccgcagaaca agtggtcgat
    13201 attgcaaaaa ttaaacaaaa tctgaccgct tccggctata cctttgatga acaaggtcgc
    13261 ttaaccaaag acggcaaacc gtttagcttt accatgcgca ccttctcaga tcgtcctgaa
    13321 ttaccggtga ttgctactat cttacaagct caatggaaac aaattggcgt ggaagtgaat
    13381 gtttcggtgg gtaatttcag cgaaattccg gcggggcatc aagacggcag tttagaaatg
    13441 gctctttatg ccttaaatta tggcaaaacc ttagatccat atggcgtaat tgcctccgac
    13501 ttcgccaatg gtggcagtga ttggggggta atgaattggc aaaatactga ggtagacaat
    13561 gcagtcaaat cgctcgaaac cgagcgtgac ccgcaaaaag cgaaagcatt aaagcaaacg
    13621 gttagcaaaa ttatttacaa tgatttgcca atcattccgg tggtttatta ccaacaaaat
    13681 gtggtggcac ataaagaagt aaaaaatgtg acgctagatc catttgaaag acgcttcttt
    13741 ttggagttat taagtaagta gtttaattca aaatactcct cgctttagaa aagggaaggt
    13801 aggatttttc agtagtaatt tgcgctctta ggtgaataaa tagtgacaga attatcgttt
    13861 tttctcattt ttcacctatt ttctccgctt atttcttctg ccaaatcttc ccttcccctc
    13921 tttgctaaag agggggatca gaacgcataa aatcatcttt ttaataaatg aaataataca
    13981 atgcacaaaa ttctcttccg ccgtcttatc caaattctac tggtgatttg gtcggttggc
    14041 acactcacat ttatcctcac ccgccaactt tcgggtgata tggcataccg cattgctgcc
    14101 agccgctatg gttatgatca agcagatagt gctgctgctg aggctgtgcg tgccgagctg
    14161 ggattagacc aaccttggtg gcaaagctac ttcagctggc taagtgactt ggctcaattt
    14221 aatttaggca aatcattggt gaccggtgat ccggtctggt ctgaaattca gcaccaattc
    14281 gggcatacct taagccttgc gattgtggca cttatcttag caatccttat cgggcctccg
    14341 ctcggtttgt tagccgcccg taagccaaac ggcttttttg accgcttgac actggtattc
    14401 agtaccctgt ttcgctccgt gccggcattt attattgcga ttggcttgat tacgctgttt
    14461 tccgctcaac taaaatggct acctgccggc ggatacggct gttggcaaca ttttatcttg
    14521 cctgccttaa cgcttgcgat tggcttgagt acggtttcgg tacgagtcac ccgttctgca
    14581 atggttcagg taaaaggctc agaattttac caattttcac aattaaaagg cttaagccgt
    14641 tggcatacct ttttacgtca cggtttgccg aatattgccg tgccggtcat tgcctaccac
    14701 gcagtacaat tagtttattt aattgaaggc gttgtggtgg tcgaaagcct atttgcttgg
    14761 cccggcagcg gacacgcact ggttcacgcc atcattgccc gtgatgtgcc gatgattcaa
    14821 ggtacaacgc tcgtgatggg cggattgttt gttgtattaa acaccattgc cgatctatta
    14881 agtgcttgga ttgacccacg aattaagcga taggacatca agatgaaaat ttcaatttca
    14941 caatatttag gcggcactat tctccttgca atgttgggat ttgccttttt acagccttat
    15001 ttttacccga tggatattgg ctttcaagat ttaaccaata tcctttccaa tccaaatgaa
    15061 atcgcttggt tcggcaccga tcatctcggg cgggatatgc ttgcccgtct tgcctctgct
    15121 attcgtcttt cgtttggctt atcactgttt agcgtgattt gtgccttaat tgcaggctta
    15181 attaccggca ttatggcagg ctttttcggt ggctggattg accgcatttt cagctttatt
    15241 tgtgatctag tgatggcact ccccggctta cttttagtat tgctctttgc cgccctttct
    15301 cccggctcat tttggacgct ctatttaggg atttcattgg taatgtgggt ggaatttttc
    15361 cgtgtgatcc gctctatcag ttcaacaatg gcaaacagct cggaaattca agcctcacgc
    15421 ctaatgggaa tgggctggtt ttatagcttc aaacgccact tattgccccg tttattaccg
    15481 atgattgcca ctttatcggc attctcgctc ggcaatgcga ttttagctct cgccacactt
    15541 ggctttgtca gcgtagggct tcgcccgcct acagcagaat taggcttgat gatgaccgaa
    15601 ctattccctt actactacga agcaccgctg atatttttgc aaccagtggt tgccgttttc
    15661 ttaatggtac tcagcttaca attattgtct agaaaaatta aataatgcgt aggggcaggt
    15721 cctgtgcctg cccaaaattc ttattatatt tatgggcggg cacagggccc gcccctacag
    15781 taataaaatg aagatgaaat tactcgatat ccaaaaccta tctgttgaaa ccgaaaacag
    15841 attacagctg gtcgaaccga ttagcctaca attaaaggca ggaaaaaata ttactatctt
    15901 aggcgaaacc ggctcaggca aaagcctgct gattcaagcg attatggggg cgttacccga
    15961 cggcttaatc gcaagcggtg aaatttcggt aaaaaattgc aaaatttcca ccgaatccga
    16021 ccgcttgcaa acattgtggg gtaaaacctt ggtaatgctg ccacaagagc ctcgccgctc
    16081 gcttaatccg attatggcaa tcggcaagca gttgtgggaa agttttcact atgtggcagg
    16141 caaaccatca tctcaagcca aaacggaaag caaagcctat ttagccaaac ttgggctggg
    16201 cgaatcggtt gaaaactacc cacaccagct ttccggtgga atggctcaac gtgcctcttt
    16261 tgcgattgca actgccgccg gtggcaaaat tttacttgcc gatgagccga ccaaagggct
    16321 tgacccaatc agtaaaggca aagtgattga actgttaaaa tccgcctacc aaaacggtgg
    16381 aggcttgctc accattactc acgatattga agttgccgag caactcggtg gcactatttt
    16441 agtgatgaaa aaaggcgaac tgttggagca aggtgaggca aaagcgttgt taaataaccc
    16501 acaacaccct tacaccaaag cacttatcag tgccgatcca aaacattggc aaccattgca
    16561 agatctgcaa aatttaagcc aaaaacaacc gcttgtttcg gttaaaaatt tgagtattgc
    16621 ccgtggtaag aaaacgctgt ttagcaacct ttcctttgac ttacacaaag gcgaagtgct
    16681 tgggattgtc gggcatagtg ggattggcaa aagctcgctt gccgatgtac tttgtggttt
    16741 gcttaagccg aaatcgggcg aggttgtgtg gcacagccac agccataaaa aacaccaagt
    16801 gttgaagctt taccaagacc caccggaagc ctttgctccg aatgtcagtc taaaaacctt
    16861 gcttgatgat gtgattaaca agcaccaatt agatcgactg ccgattccaa gtttactgca
    16921 acaactttcg ctcaacccag aaattttgca acgcaatgcg gaaaatgtct ccggcggcga
    16981 gctacaacga gtagcaattt tgcgagcctt gctcttagaa ccggtactac tgtttgccga
    17041 tgaagtcact tctcggcttg acccaatcac acaacaagaa acgatagaat tgctgatcaa
    17101 ccagtgccga gcgagaaatt gcagtctgat tttggtcagt cacgatcctt atctaattga
    17161 gaaatcgtgc gataaagtga ttaatttgga agagtatgtg ggctaacaag cggttcaatt
    17221 tctgagattt tttgcggctc taaaaacaaa aatgcgaaga catcagttct tcgcattttt
    17281 cttacttatt ccttattgcc cagccagctt ctgccgtaca atttcaaaca gacagacccc
    17341 ggttgcaact gagacattca aagaagatac tgagcccgcc attggaatgc tgataagctg
    17401 gtcgcaatgc tcacgggtaa ggcgacgcat tccgtcgcct tctgccccca taactaacgc
    17461 aatcgagccg gttaattttg cttcataaat gcccgattcc gcctcacctg ccgtgccgac
    17521 aatccagaca ttatgccgtt cttgtaaatc tcgcattgtg cgagccagat tggtaactcg
    17581 aatcagtggc atcacttccg ctgccccaca ggcgactttg cgagcggttg gtgtaagctg
    17641 agcagattta tctttcggca caataaccgc atcaacccct gccgcatcag cggtacgcaa
    17701 acaagcccct aggttgtgag ggtcggtcac gccatctaaa atcaacaaga gtggattttt
    17761 cttttggctt aagatcgcct ctaaatcgtg ttcattcagc tctttttgtg gcacgactct
    17821 ggcaataatc ccttgatgca cttcaccttg cgatttgtta tctaaggttt ggcggttcac
    17881 ttgttgaatt gccaccccta aacgttgtaa ttcatttaat agtggcatta agcgtttatc
    17941 ttcacgccct tttagcacca gcacttcaat taaacgctca ggtgcattat ccaaaaaggc
    18001 tttcactgcg tgaatgccat aaatttgttc gctcatattt tatccttaat aattgggcga
    18061 acccatcagc tcgcccatat aaatacctaa ctaaagcaac atcttcacaa ttttatccaa
    18121 cttaaccctg ccgaattttt tcagcaattt acgcacattt tcagggtaat cggttaaaac
    18181 ttccaaatca ctgtagtgag ttaaaatctg cgtatgttgg caaatttggt ttaactccgt
    18241 ttctgctttt tcacttaatt gatgttgagg atcggaaatt aaaattgcat tttcggcatc
    18301 taaccgccac gctcttgggt taaggttatt gccggtcagc aaaatatagc ggttatccac
    18361 ccaaacccct tttaagtggt agctgttttc gccatctttc cataagcgaa tggttaactg
    18421 tttattttgt acataaccgt ccaaccgttt tgcaaaggct cgtaagttct tttcatacaa
    18481 ataaggcaga gccgatgcca tcgtgaattt ttcgtccggc ttggtgtaga aatcattagc
    18541 ggttttatcc cccacaataa tttcaaccga tttgccgttt gccaatagcc attcaatacg
    18601 ggttctcaga gaatgcggaa aattaaaata cggagtgcaa atcgttaatt tctgctcagt
    18661 ttgataaaac aacgcttcaa tcactttatt taactgattc ttacgtcgcc ctaagcctac
    18721 taaaggagaa accgctaagc gaccattttc agcaacaccg ttaaataaat acgcttcccg
    18781 acttaattgt ttgcggaaat gcttaatttg cgcacgaatt tcagccgttt tcgggcgatt
    18841 ttccgtatct aaacgtttta ccgcttcatt ggttaaaaga tgctgttgaa taaacgtcac
    18901 ccagctatcg gcaagaactt tattttcaat gacgtggtaa cggtcataac ggtaacgttc
    18961 aaattgatgc aaatacacat tattaatgct tgctccgcta tacaaaatcg tatcgtcaaa
    19021 tacgaagcct ttcaaatgca atacaccaaa cacttctcgt ccgttaatcg acacaccgta
    19081 aaaggcaatc tcttgccctg ccggtaaacc ttgttcgtat ttaacttttg cataccagtc
    19141 ggcgttagat aaattctctg cctcaccaat acgcccacgt tgggctcggt gccaatcaac
    19201 caaaatgtta atttccagtt caggattatt tcgcttcgct tgatataaag cagctaatac
    19261 ttcctgcccg gcttcatctt tttcaaagta aagagcggtt atataaatac gcttttttgc
    19321 cgtttgaatc agctgtaaaa tttgttgttt aaacgctttg ctcgaggcga gaaactgaac
    19381 ctgctctgcc acttgtggta agtatggcag gcttttcaat aggtattcag ctttacgttg
    19441 tttgttcaaa attaacatca ttgattccaa aattttcaat cgttgcctgc tattttacac
    19501 tgaaatcgcc aataaagcga ttttcgctta acggcattga tagctggtca aacgattagg
    19561 atcttctccg gtttgataaa ttgcgacttt cggataagca caaagcggga tctgcttggc
    19621 tttattaggg taaagctcac cggctttggc ggcaatactt tccggctcca gtcctttctc
    19681 aacccaattt tcaagggcag tgagcatatc aaaatcattc accgttgccc ctcgcccaca
    19741 atggttcatt gccgacacga aaaacaattt tgcaaaatgt tgcggatttt cgaccgcttg
    19801 ttgtaggctt tgataccaat ttttgagatc aactgccgaa aaaatcgggt ctgaaacgcc
    19861 ttgataaatc agcattttgc caccgttctg cttaaaagcg gataaatcaa cttgatctgt
    19921 atcgtgaatg ctccctaccg ctttcacttg ttcgctggct tgatccaaat ctacgctgag
    19981 tggatcacgg ctcggcactc tgggggctaa atagtaatgg gtcaaacttt tcaatcccat
    20041 tttaaaacta atgctgttgg gctgagcggt ttggctatca cctaatttcc aatcccgcca
    20101 gcctttagcg ttaatgccgg aatcatacgc ccaagggcta taaatcagct cgcctcgact
    20161 gtttttcgcc ccctcgaaaa tcgttttgat taaagcgact tttttctgcc ccagttgctt
    20221 tgccaccatt tccggctgga aatcacactg ttcccacgca ttaattaaac cgtctgctaa
    20281 gccgtctaac ttatcgcaac gtgttaatac gccattggca atcacatcta aatcttgttg
    20341 agtgagggct tgggataaaa ttttgtcgcc atcaccattc ttcggagcaa ctgccaacaa
    20401 ggctcgatta tcccatactt ccgccaagac tgaacgggaa acccgaaagc cggggctgcc
    20461 tgcaatcaca ccgtcaaatt cctgtggata acgcattgcc gccatcatcg cctcacgacc
    20521 accattcgag cagcccataa tgtaattgtg cttgctcggt tttcggtaaa attcggcaat
    20581 caactgcttg gcaaccgtgg tcactttgcc gatagaggca taggcataat ttgagcgagc
    20641 ttcgggatct gcggtaaaca ctaaatctcg agtggcgtga ccactgtcgt tactcactac
    20701 tgcatagcct ctgtttaagc catttgcacc actcgccccg tgcggataga gcttaccaat
    20761 ggcagggaaa atcaccccac ctacaccgcc cgccccctga aataagaatt tttcattcca
    20821 ttgttcgggt aaacgtagct caaattgaat accgtaagga acattatcca cctccacccg
    20881 ttttccaatt tcaccttgta ctaaacagta agccggcaac tcagcagatt tctcaaccca
    20941 ttcagcttta taaatagccg ttttttccgg cgagttagat tttaacgcga cacattgttc
    21001 agccatagaa ttagccaaag cagtgtgaga aaaaacggag agaaaaataa aaagaaaagc
    21061 gattattttc atcatttaca tcaatacaag cggttatttt tccgaaaatt tttgcaaatt
    21121 ttaaactgag tgtctatcta tcgctggaaa agctaaggca gagtttcctc tgccttagaa
    21181 agatgaattg aattacattt taagcaaaca agcgtttttc gccttcgccg gctacgtttt
    21241 ccacacaacg tccgcaaact tcttcgtggc cagagtgcga gccgatgtcg gtagcataat
    21301 gccagcaacg agggcatttc tcaccatctg cattttccac ttttactgcg agtccggcta
    21361 attcgccttc cgcaatatct gcttccgcca gtggtttaac aatcgcttgt gaggtaatca
    21421 gcacaaagcg taattcattg ccaagttgtt ctaataacgg gcgaatttca tcattggcga
    21481 ataccgtcac cttggcttct aagccagcac caattacttt gtctttacgg gcttgttcca
    21541 gcacacggtt gacttccgca cgcactttta agatttgttg ccagtaagca tcatctaatt
    21601 tatcttgctc ggttaaaccg aataatccgg tgtagaattc ttcggtaaag acaaattcac
    21661 ttctgccttc cacctgcggt aagtagcccc aaatttcatc ggctgtgaag gataaaatcg
    21721 gtgcaatcca acgtactaac gcttctgcaa tatgccataa cgctgtttgg cagctacggc
    21781 gggcaaggct gtcggctttg gtggtgtatt ggcggtcttt gataatatct aagtagaaag
    21841 accccatttc aatcgagcag aaacgcatta aacgctgtac taccgtgtgg aattggtagt
    21901 tatcataggc ttctttgatg tcgttttgag cctctaaagc acaagccacc gcccagcggt
    21961 ctaaggcgat catctcttgc ggttgaacta aatcactttt tggatcgaaa ccgttcaagt
    22021 tcgccaataa gaaacgggct gtgttacgaa tacggcggta tgattccccg gcactgttta
    22081 aaatattgtg cgaaacggta atctcaccgg tatagtcggt ggaggcaacc cataagcgta
    22141 aaatatctgc accgtttttg ttccacactt cacttggcac aattacgttg ccaagcgatt
    22201 tggacatttt tctgcctttc tcatctacgg taaaaccgtg agttagcact tgtttgtatg
    22261 gtgctttgcc gttagtagca gtggaaagca ttaaagatga cataaaccaa ccacgatgtt
    22321 ggtctgaacc ttctaaatac atatccgctg aattgccgtt aaattcaggg cgttgttcta
    22381 caacagaggc ataggtcgat cctgaatcaa accacacgtc taaggtatcc ggcactttgc
    22441 ggtaatcttt ggcttcttca ccgagcaatt ccgcaggatc taaatcccac cacgcttgaa
    22501 tgcctttttc ttctacacgt ttcgccactt cttcaattaa ttctaaagtg cgaggatgta
    22561 attcttcggt ttcattatgc acaaacatcg ccattggcac gccccaagta cgttggcgtg
    22621 aaatacacca gtctgggcgg tttgccacca tcgtatcaat acgagcttca ccccagcttg
    22681 ggatccaacg caccgatttg atttctccta gtgcttgctg gcgtaagcct tgggtttcca
    22741 ttccgataaa ccattgtggg gtagcacgga agataatcgg ggttttgtgt ctccaacagt
    22801 gcggataact atgcttgatg cgggataatt ttaataatgc tcccacttct tgtaattttt
    22861 cgactacttt atcgttggat tcaaacacac ctaagccggc aaagaacggg gtgtctgctt
    22921 tgaatttacc gtcattggaa attagccctg ccatttcaat gttatatttg cgagcgacca
    22981 cgaagtcgtc cgcaccgtga tccggtgcag tatgcactaa ccctgtacca ccgtctgtgg
    23041 taacgtggtc gccaaaaata aatggcacgc tgtaatcata gaatgggtgg ttaaagcgta
    23101 ataattctaa gttttcgcct ttggtggttg ctaaaatctc agcagattca acgcctgctg
    23161 cttttgcaac atcttcgact aaatcgaccg ctagtaacac acgctcatca cctaattgga
    23221 ctaaggcata gtctaattca gggttgatcg caatcgcacg gttagacgga atagtccaag
    23281 gggtagttgt ccaaataacc gcagataatg cccctctacc tttaccctgt gcgttgaatt
    23341 tttcttctac cgcatttacg tccacagcat taaaacgcac ataaatagag ggagaaactt
    23401 tatcttcata ttccacttca gcttccgcta acgaagatcc acaatctaag caccaatgta
    23461 ccggttttga acctttgtat aaatgcccgt tcgcaatcac tttgccgagc gtgcgaataa
    23521 tattcgcctc agtgttaaaa ttcattgtta ggtatgggtt atcccaatca cctaaaatac
    23581 ccatacggat aaaatcggct ttctgacctt ctacttgttc tttcgcatag tcacggcacg
    23641 cttggcgaaa ctcggcagcc gaaattttct catttggttt accaacaatc ccttctactt
    23701 tcagctcaat cggcaaaccg tgacagtccc agcccggcac ataaggggta tcgaaaccta
    23761 atgcggtttt cgatttcaaa atcatatctt ttaaaatttt attcactgcg tgacctaagt
    23821 gaatattacc gttagcatac ggaggaccat catgcaaaat aaaggttttc ttgcctttcg
    23881 aggcagtacg aattttttgg tataaatttt tgtcatacca attttttaac atatcgggtt
    23941 cacgtttcgc gagatcccca cgcataggaa agcctgtttc aggcaagttt aaggtgtttt
    24001 tgtagtcaat agtcattttt ttatttctcg ttaaaattat ctgttttatg cctagcacgg
    24061 catagccgta ctaggttaag catagctcag cccctctggg gctggaaact agaaaggctc
    24121 accttgcaaa ttccttaaaa aattcaaccg cttgcaagcg atctttctca atctgggctt
    24181 ttagtgcttc aaagtcggga aattttattt cattgcgtaa tttttttaaa aagatcactt
    24241 caatcgcctc accgtaaata gaggcattga aatcaaaaat atgcacttct aataacggct
    24301 tagtaccgtt aatggtcggg cggttgccga cattggcgat tccgttaaaa ctgccctgtt
    24361 tggtcttcac ttttaccgca aatacccctt gaatcggcgt aaccaaacga ttgagcataa
    24421 tatttgcggt aggaaaacca atggttctgc cgagtttatt accgtgtgca acgcgtccca
    24481 gaatcgaata aggcttgccg agtaatttct ctgccaaatc taactcattg ttttgtaagg
    24541 cttctcgcac taatgagctg ctaattcttt cttcgtttaa gctatgggta tggctttctt
    24601 ccaccgcaaa gcgatatttt aagccggcat tgcgtaaagt ttcaaaactg cccgcccgtt
    24661 ttgccccaaa gcgaaaatca tcgcctacac ttaaatagcg tactttcagt cttttagcga
    24721 gcaaatcgct gatgaaatcg tctgccgaaa tttgagcaaa tttttcacta aaacgcacgc
    24781 atagcacaaa atccacaccg gcttcttcca aatattttag cttatctcgc aggcgcatta
    24841 agcgggcggg cgggttacaa gcggttgaat ttccactttt ttttgcaaaa aactctcgag
    24901 gttgtggctc aaataacatc acaactgagg gcaatcctaa atctaaagct ctatcacaaa
    24961 gacgagccaa aatattttga tgcccaagat gcacaccatc gaaattcccg atagagagaa
    25021 cacagccttg atttaaagcg atgtgtttgt ctaagttgtg gaaacctcga ataagttgca
    25081 taaaagataa accattttat aagtgaaaat tgctgtgatt ataacgagaa atctacaaaa
    25141 aaggaaaaaa attcaatctg ttatattttt ttagtgctga aagtggtcgt gtagctaatt
    25201 attaaagcaa agatatgcta taaaactgct atttatacaa taaaaatata ttcaaatgct
    25261 acattttact atatgataat catcaaaaaa tcgagggaat cattatgaca gattttgctt
    25321 atcttcaaca aaagcgcaaa cagcttaaac tcaaagtgaa tgatatttgt gaacaagctg
    25381 gggtaacccg agcttatttt aatcagttag taagcggaaa aatcaaaaat ccaagcgcca
    25441 ataagcttaa agccttgcat tccgttttag atatcgtaga agatagcaac cagcgttccg
    25501 gggttatttt tggcaaattc tatcctattc acacaggtca tattaatatg atctatgaag
    25561 catttagtaa agtagatgtt ttacatgtta ttgtttgtac cgattctgaa cgggatttac
    25621 gtcttttcca ggaaagtaaa atgaaacgaa tgccgacaaa tgaagatcgg ctacgctggg
    25681 tacagcaaat ttttaaatac caacaaaaac agatctttat tcaccattta gttgaagacg
    25741 gtattccgag ctatccaaat ggctgggaag attggtctgg tcgtgttaaa gcgctatttg
    25801 aagaaaaaag cattaatcct actattgttt ttagtagtga aattcaagat aaagaatctt
    25861 atgaaaaata tttgaatcta gaagttcaac ttgtcgatcc tactcgtgaa tcctttaata
    25921 tttcagcaac acaaattcgt aataatcctt ttcaatactg gcgctttatt ccgaaagaag
    25981 ttcgtccttt ctttgttaaa actattgcga ttttaggtgg tgaaagcagt ggtaaatcag
    26041 tgttggtgag caaattagcg aatgtattta acactacctc tgcttgggaa tatgggcgtg
    26101 agtttgtgtt tgagcaactt ggtggcaatg aacaagcaat gcaatattcc gactatccgc
    26161 aaatggtgct tggacatcaa cgctacgttg attatgccat gaaacatgct cataaagtgg
    26221 ctattattga taccgattac atcacaactc aagcgttctg tattcagtat gaagggaagg
    26281 ctcacccgtt tctggattca atgatccgcg aatatccttt tgatgtgacg attttacttt
    26341 ctaacaatac aaaatgggta gccgatggtt tacgcagttt aggatcgaaa aaacagcgtc
    26401 aacagtttca acacctactg aaaaaactac tagaaaaaca ccatattcct tatattaaaa
    26461 ttgaatctcc aagttatttg gatcgctaca atcaagccaa agaggtggta gaagctattt
    26521 taaatgaaga accaatccca ttacagttta agcaatataa tattcacgaa tttgaataac
    26581 tgccacagga aataacatga tactttttgc aggcgatcca cacggtagct acgagcatct
    26641 ttatccgatt ctacaacagc agacggagga ggtagcttta gttattctag gcgatcttca
    26701 attgactact cctgatgaat tagatcggct ttcgcagtat tgtgatattt ggtttattca
    26761 tggtaaccat gacagtaaaa ccgttgctgc ctttgatgct atttggaata gtagctggaa
    26821 agaacgcaat attcacggta aagtagttga cattcaagga ataaaaattg caggtattgg
    26881 aggggtcttc cgaggtcata tttggatgcc gcccaatcgt ccaatgtttt ttgatcccat
    26941 ccatttttgc caatactctg ctccggaaaa aatttggcgt ggtggtattc cattaaggca
    27001 ccgctcttcg atcttccctt ctgattttga agcattggaa aatgaaaaag ccgatatttt
    27061 aattacacac gaagcaccaa agccacaccc tcaaggcttc tctgtaatca accagctagc
    27121 aagaaaatta ggggcgagca aaattttcca tggccactac catgataatt ttaattatgg
    27181 caatctaaat gtcagcagag aatgtgctat ttataatatc ggctttcgta gcctagcgga
    27241 tattaatgga aattatctaa ttttaggtgt tgatgatcga gagaaatagc caaaaatttg
    27301 actgaattaa acaaattgtc attttaccct tcccattcat aaatttataa gtaaaatgcg
    27361 agaaatttgt aacataaacg ttattaaaca gaatttataa attaaatcag aggtttaaaa
    27421 gatgaagatc ccacaaatct taattgttga ggatgagtta gtaacaagga atatgctgaa
    27481 aagcattttt gaaggagaag gatatcaggt atttcaagca tctaacggcg aggaaatgca
    27541 ctctgttctg agtacaaatg aaatcaatct tgtgctaatg gacattaact taccgggaaa
    27601 aaatggatta attctcgccc gagaaattcg agagaatatg aagctaccat taatgttttt
    27661 aaccggtcgc gacaatgaaa ttgataagat cctcggttta gaaataggtg ccgatgacta
    27721 tatcactaaa ccgtttaatc ctcgagaatt gactatccga gcgagaaatt tattgcaacg
    27781 aacgatgata gataaagaaa acgacgttgt aaaagagcaa tctgaaattg aaagctatcg
    27841 ctttaacggt tggatcttag acattaacag tcatagttta atctcaccag aaggtgaggt
    27901 aaataaatta ccacgtagtg aatttagggc tttattacat ttttgccaac atcctggaaa
    27961 aattcaaaca cgtgaagatt tattgaaaaa aatgaccggg cgggaactaa aacctcatga
    28021 tagaaccgtt gatgttacta ttcgccgtat tcgtaaacat tttgaagacc accccaatac
    28081 cccagaaatt attgtcacca ttcacggtga aggctaccgt ttctgtggta acatcgaacc
    28141 ttaatcaaga taggagtaat tttatgaaaa aattaactat tgtcgcatta acttgcttat
    28201 tttctaccca tctattagcc gctcctgtcg gaaatacatt tactggcatc ggtgtcggtg
    28261 tagatgtaac tacaacaaaa tacaaagttg aaggagtaaa aggcaaggat tccacaggtc
    28321 cggcattagt tgtcgattat ggtattgagc aaggcaataa ctttgtaggc gttgtacaag
    28381 gaaaagcaaa agtaggtagt acaaaagtat ttagcgatgt aaaacaaaaa aataaatata
    28441 ctatagctta tcaacaaggt tatcgtgttg gatccgattt attaccttat gtaaaagtag
    28501 atgccagctc aagcaaaatc ggtaatgaaa cctatcgtgg ctttggtttc ggtgctggtg
    28561 caaaatatgc agtttcaagc gatgttgaat taggtgcaga atacactcgc gataatttaa
    28621 aacgtagcgg cacaaaatta aaaggtaacg ctttcaccgc gaatgcaact tatcgtttct
    28681 aatcttagcg gtaaagtttt ctgaaaaaat aaccgcttgt aacacaaaag agcctgaagt
    28741 gattcaggct ctttgccttt taatataata ctcgggctcg aatcgtgcct tcgatcgctt
    28801 ttaaacgttg taatgcttca tcaacattgt cgctctctac atcaattaca acataaccga
    28861 tagctgcatc ggtttgtaaa tattgagcgg caatattcac atttgattcc acaaaaatct
    28921 ggttaatttg atttaacata cctgggcgat tctcgtgaat atgtaataaa cgtttggtat
    28981 tagtatgaag cggtaaggat acttcaggga aattcactgc cgtcacggtt gaaccgttat
    29041 ctgaatattt cacaaattta ttggcaactt cggtgccgat atttgcctga gcttcagagg
    29101 ttgaaccacc aatatgtggc gttaaaatca cgttatcaaa cttgcacaat ggtgacacga
    29161 acgggtcatt aattgatgcc ggttcttccg gaaatacgtc aatcgccgca ccacgcaatg
    29221 agccgtcttc aatccgagcg gctaatgcgt ctaaatcgac cactgtacca cgagcggcat
    29281 taattaacac cgagccttct tttaattgag caatgcgttc tgcactcatt aggtttttag
    29341 tcgagtcgat ttccggaacg tgtagtgaaa tcatatcgca ggttgaaagc aaatgctcta
    29401 atgtcggcac ttgctgtgca ttaccgagtg gtagtttgtt ttcaacatca tagaaataaa
    29461 cctgcatacc aatggcttcg gcaagaatac taagctgtga accgatatga ccatatccca
    29521 caatacctaa tttcttgcca cgtacttcgt ttgcacctgc tgccgattta ttccacaccc
    29581 cacgatgcac ttccgcattt gcagtcggga ctttacgcat taataaaatc atctctgcca
    29641 gcactaattc tgccaccgag cgggtatttg agaacggtgc attgaatacc ggaatacctc
    29701 gtcttttcgc cgcattcaaa tcaacttggt ttgtaccgat acagaaacaa ccaatcgcaa
    29761 ttaatttcgg agcttgagcc agtacttctt cggttaaaaa agtacgcgag cgaataccaa
    29821 caaagtgtgc atctttaatt gcatcaatta attcttgacc gtctaatgct tttttatgca
    29881 cttcaatatt ggtataacca gccgctaaga gtacatcaat tgcgttttga tgtacgccct
    29941 caagcagaag gaatttgatc ttggatttat ccaaagaaat tttagccatt ttttgctcct
    30001 aagtatttgt atttgcaata ataaattatt ctaaaataac tgcaccttca ggtgtgccga
    30061 caatggttac attggcaaaa cgttgtgcaa aaataccgtt agtcaccacg cctgcaatat
    30121 tattaatggt atgttccatt ttcaacggct ccataatttt aaagttatgt acatctaaaa
    30181 tcacattgcc gttatcagtg accacgccct cacggtattc cggcgaacca cctaaggcta
    30241 cgagctgacg agccacataa gaacgagcca ttgggatcac ctccaccggc agagggaaag
    30301 ttgaacccag cacatcaact tgtttggatt tatccacaat gcagataaat tttttcgcta
    30361 atgaactcac gattttctca cgggtaagtg ctgccccgcc acctttaatc atcgcccctt
    30421 gtggcgtgat ttcatcagct ccgtcaatat acacatctaa ttccgtcact tcattggcac
    30481 tgaatacttc aatgccgata tcacgcaaac gctgttccga ggctttagag gcagcaaccg
    30541 ctcctttaat ctcatctttc attgaagcaa gggcatcaat aaaacagttt acggttgaac
    30601 cacttcccac cccaacaata gtgtccggtt ttacaaattt taatgcagct tgtgccgcaa
    30661 tttttttcat ttcttgttga tccattttta cctccacttg tagggcaaat catcatttgc
    30721 ccacttcggc aaggcgaaaa aaattttcgc cctactacat ctattctaca catatatgta
    30781 acaagcggtc atatttggca aattttttac caaaaacgac cgcttgtcat tagttacgtt
    30841 ttactgcttc aacaatctct tccgcacagc tttgagcaag tacagcatct tcgcactcca
    30901 ccatcactcg aattaatggc tcagtgcctg atttacgcaa taaaatacgc cctttgcctg
    30961 ccaagcgttt ttccacatct gccgctaccg ctttcacttc gttactttca agcggatttg
    31021 ccgccccttt ctcaaagcga acatttagca gaacttgcgg gaacagaggc actgcttttg
    31081 ccaaatcatt caggcttaat ttgtggcttg ccattgctgc taatacttgc agtgaggcaa
    31141 taataccatc accggtggtg tttttatcta acacgataat atgcccggag ttttcgccac
    31201 ccagtttcca gcctttttct ttaagctgct ctagtacata gcggtcaccc acgttagcac
    31261 gagagaatgg aatggctagc tcttttaaag ctaattccaa gctcatatta ctcattaatg
    31321 taccgactac accgccttgt aatttgcctg aacgtagagc ttctcgggct aaaataaata
    31381 gaatttggtc gccatcaact ttattgccta agtgatcgac cataatcaaa cggtcgccat
    31441 caccatcgta agctagacca acatccgcac ctgcttctac caccactttt tgaagtgctt
    31501 taatatccgt tgcaccacat ttttcgttga tgtttaaacc gtccggctta gtaccgattt
    31561 caagcacttc tgcccctagc tcacgcatta cattcggcgc gatatggtag gttgcaccgt
    31621 tggcacaatc caccacaatt ttatagcctt caaggcttag ttcagacggg aaagtgcctt
    31681 tacaaaactc gatataacgt cctgcggcat cattaatacg actggcacga cctaaatttg
    31741 ctgaatctac gcaatccata ggcttatcaa gcattgcttc aatcgcttct tcaatttcat
    31801 caggtagttt ttcaccaacc gacgagaaga atttaatgcc gttatcgtaa taaggattgt
    31861 gagaggcaga aatcacaatg ccggcttccg cacggaaagt acgggttaaa taagcaattg
    31921 ccggagtcgg catcggacca acgaatactg ctgataaacc ggctgcggtt aaaccggctt
    31981 ccagagccga ttccaacata taaccggaaa tacgggtatc tttaccgatt aatacttttt
    32041 tcgtgccttg ggttgccaac actttacctg ctgcccaacc gagttttaat gcaaattcag
    32101 gtgtaattgg aaatttacct acttcaccac gcacaccgtc tgtgccgaaa tatttacgag
    32161 ccattctaat tcctaagatt gataaaaatt tactttaaaa aatattgata tgccggactt
    32221 tcgctcacat tttggaagcg gtaacctagc tgttctaaat gtcggtttaa ttctacttca
    32281 tcgcctctgt ttaatgcaaa tgcggcaaga atatcgccat aatcggctcc gtgagctcgg
    32341 taatggaata acgagatatc ccagttagtc agcatttgta agaattttag caatgcccct
    32401 ttctgctctg gaaattcaaa gctatagagt tgctcatatt gaatggagct tgctctaccg
    32461 cctaccatat aacgaatatg ggttttggca atatcatcgt ccgataaatc tgccacatca
    32521 tagccgtttt gttgcagatc tttaataatc tctacttttt ctgccgagcc tgaaattcgc
    32581 acccccacaa aaatacaggc ttgtttatca tcggaatggc gatagttaaa ttccgttacc
    32641 gcacggttgc ctaaaatctc gcagaatttt aagaaactac ctttctgttc agcaatggtg
    32701 actgccaata aagcttcacg tttctccccg atttcacaac gctctgacac aaaacgtaag
    32761 gtgtggaaat tcacattcgc cccggaaaga atgcaagcta agtttttatc ttgtaattga
    32821 tgctctttca catatttttt caaaccggca agggaagttg ccccggacgg ctcggaaatc
    32881 gcacgcacat tttcaaaaat caacttcatt gaggcacaga tttcatcatt atccaccaac
    32941 accacatcat caacatattg ctgacacagg cggaaagttt catcgccaat gcgttttacc
    33001 gcaataccgt cagcaaaaag cccaacccgt tctaaatcgg tcggttgccc ttgctttaag
    33061 gcgtgatata agcaagcaga atctttagat tcgaccccaa tcactttaat attcggcatc
    33121 acctgcttaa ttaaaaccgc aatgccggca attaagccgc caccgcccac tggaataaat
    33181 acataatcta aatccggctt ttgttgcacc agttctaagc cgattgtgcc ttgccctgca
    33241 atcactgccg ggctgtcaaa cgggtgaatg aaggtcatac ccaattcggt ggaaagctca
    33301 atcgctttcg ccttagcttc atcaaaattc gccccataaa gcaacacttc accaccatag
    33361 ccacgtaccg catcaacctt aattgccggt gtgttttgcg gcattacaat caaggctctt
    33421 aaacctaaat gtttggcaga aagtgccacc ccttgtgcgt ggttgcctgc tgaagccgca
    33481 atgactccag cctctttttg tgctttggat aaatttgaga tcatcgcaaa agcacctcgc
    33541 aatttaaagc tgtgaaccgg ctgtcggtct tcacgtttga taaaaataga gttgcctaac
    33601 cgctcagaca gtttttccat tttctgtaaa ggggtcactt gcgctaagtc ataaatattt
    33661 gagcttaaaa tcgagcgtaa atagtcgata gcggattggg aatgttgtgt ttcgttcatc
    33721 attttgaaag gttatttatt gttagattga gataaagaca ttggtaaatt tccaaggaaa
    33781 attgaccgct tgtttggtta tttagcaatg gctttaacag ggaatatttc ctctcgcccg
    33841 tttgcgggag agagacagct taaaatttcg ttcagaaatt ttaagcagag agaggggaaa
    33901 ccttggatat ccccctctcc ctccgcaaat cttcgatttg ctccaccctc tcccgcaagc
    33961 ggggagaggg gaaatcacaa agttagtgat gaccaccgca accacagcca ccgtgtccgt
    34021 gatgatggtg atgatcgtgg tcgtgaccgc cgcagcaacc atcgtgatcg tgatgatgat
    34081 cgtgcccacc acaaccgcaa ccgtgttcgt gtccgccgtg aacgtgtccg tgtgcgattt
    34141 cttccgctgt cgcttcacga atgccaacca cttccacaga gaaaagtaat tcctgaccgg
    34201 ctaacatatg gttaccgtcc accacaactt catcgccatc tacttcggta attaccaccg
    34261 gtagcggacc taaatccgtg tccgcaataa aacgcatacc cacttctaat tcatcgacgc
    34321 ccataaatac atctttcggt acacgttgaa ccatattatc gttgtactcg ccgtaacctt
    34381 cttccggttt cacacgcact tcaaacacat cgcctacagc tttgccttca agggcttttt
    34441 ctaagccttc taccaagttg ttgtgaccgt gtaaatattc taacggttgg tttaccggtg
    34501 cttcatctac taatacgcct tcttgagtac gcacttgata tgcaatgctt ggcactaaat
    34561 cttttgtaat gttcatattg aatcctttaa ttcatcggtt ttataaaata gcaagccatt
    34621 gtaacgcttt attttatatt tgcaatctat ctggaaattt taaccgcttg tcagtaaatt
    34681 agtcgataat atcaggggtt acggtgtcta ccacatcaac tgcggttccc accactccac
    34741 caaccaccga agttaccaaa caaccactta ggaaaatagt tgctgaaatc agcccacata
    34801 ctttgattaa ttttttcatt ttaaaatcct ttcaaaaaca aaaaacagcc ctaatcaaga
    34861 ctagagctgc atcatattta ttcgcttaaa ttatttttct tcagcgataa agcgataaac
    34921 taccgcaccg ataattgcac cgacaatcgg agcaacccag aacaaccata attgctcaat
    34981 cgcccagctg ccttggaata acgctacacc ggttgaacgt gccgggttta ctgaggtatt
    35041 ggttaccgga atgctgatta agtggattaa ggttaaagcc aaaccaatag caatcggagc
    35101 gaaacctgct ggagcacgtt tatcggttgc acccataatg atgattaaga agaatgccgt
    35161 taataccact tcaattaata atgctgctgt taagctatag ccgtgtggcg aatgctcacc
    35221 ataaccgttg ccggcaaagc ctgctgtagc atcaaaagtc ggaacacctg aagcaatggt
    35281 gtataacact gcaccggcag caatcgcacc gattacttgg gcaatgatat aaggcactaa
    35341 atctttagcg ttaaaacgac cgccgactaa taaaccgatt gaaaccgccg ggttgaagtg
    35401 accacctgaa atatgaccga ctgcatacgc cattgttaat acggttaaac cgaaggctaa
    35461 cgaaacgcct gcataaccga ttcctaattc aggaatgcct gctgctaaaa ctgcactgcc
    35521 gcaaccacca aacactaacc aaaatgtccc gaaaaactca gcaaaatatt ttttcatttt
    35581 ttatccttac cctaaagggt gaatcacaca taagtgtatt aactttccga atgctataaa
    35641 acatagccaa taaaatatga gtatactaaa aaaagtaaag acgcatattt cttaattgat
    35701 agtatagacc gattttttcc tccaattaaa gtaaaaatac aactctatac aaatctatac
    35761 atttctattc aaattccaca cttcctgaag cggtagctga aattgtggtt ttacctgctt
    35821 ctaacgggat ttcatccata gatttgcttt gtgccattga tgaaactgca tacattgctc
    35881 tgtgttcata atatggtcta ccaccatcat ttggagtttg aatattgata ttaactagct
    35941 tatatgtttt cgcccctaag gctttttgaa tcacatcggc tttatgctga aatttgctga
    36001 taatttccag cgtcatttca tcttcaaggg acgccatttt ctctggcgat acactaaaat
    36061 caatgtaacg aatcgccaca tctttaccta aattttccaa caccgctgcc attgcatcaa
    36121 aatctttgct tttcaactga atgctaccag aggtatccca accatcaata ttccctttgt
    36181 tgttataatt aacgtgatta gtcacacctt cagcttgtac ttcaatcgat ggatgttttt
    36241 ttgcctcagc caatacacga ttcaggtttt cagatacaaa ttttttcagc tccggcaagg
    36301 agttacctga tttttggcta tacacacttg cctgcatcac gtccttttcc accgtgcgag
    36361 agacttcggt tgagaaatta aaagaagccg gtttatcttt atgttccacg gtatgagttt
    36421 ccgctgaagt taccgctgtt gcgactgcaa gcggtagaat ggtaagaaaa tttttcaatt
    36481 tcataatcag tccttaaaag ggttaaaaat catttcttag atctcacttg cgtaggaaag
    36541 ttcattcaat cgaaagcaca atcgcctgtg tatcattttc aatttgccag cgaatattgt
    36601 agccggcaag gttcatacca taaactcgct cactaggttt cccttgttga tacgccgggc
    36661 gagggtcttg ggcgatgaca tcggcaagaa aactaagcgg ctgttcgatg ccaaattttg
    36721 caaaatttcg gcaaaattcg acagcttgtt ttgcctcctc gctaaaacgc accgctaatc
    36781 ttgcttgtgg tttttgctga gcaaaaccgg aaaccgcttg cggctcgcta tctgcaaatg
    36841 caatgtaagg cttgatgtca aaaattggtg tgccgttaac taaatccacg ctgcctaatt
    36901 tcaaataaac ttcactcccc cccgccacta ccgcttctaa cttcactttc gataagccaa
    36961 gcggattcgg acgatgggtg gcacggctgg caaagacccc gacccgttcg ttcccgccca
    37021 agcgaggcgg tctgacggtg gcgtgccact ctctttcggg aatgtgatgg aattggaaaa
    37081 tcaaccaaat atgactaaat ttctccaagc ctctgactgc atcgggggta ttgtaaggcg
    37141 gaattaaacg tagaatgcct ttcccctccg ctaccaaatt cggctggcga ggcacggaaa
    37201 atttttcatc ataggggctt tccacaaaac cgatagggtt taattgaatc ggggttagtt
    37261 gatttgaggt agagttcatt acgctttttt ctgttaaaat aatataaaat attggacata
    37321 atgatatgaa attgaggatg gtgcaagcgt ccacgcttgt accaattcgt tttaccattt
    37381 aacacaagag tggacgcttg cactatcgct taaatcctta acatcattgt aaatgaaatt
    37441 acgctaagat tattctctat gaacaaaaat tctctctttt cgatttggtt taccaccgct
    37501 cgcccgaaaa ctttaccgct ggcgttagct tcaattattg tgggttcagc acttgctcat
    37561 tgggcaggga aatttgatgt tgttaccacc ttactcgcat ttatcaccac cattttgttg
    37621 cagatcctgt ctaacttcgc caatgattac ggcgaccacg tcaaaggctc tgacaccaaa
    37681 gaacgaatcg gaccgctacg ggcgattcaa cacggtgtta ttggcggtga acaacttaag
    37741 aaagccgtga ttatcttaag cctactctcg tttgtttccg gtgttgcctt aagtgcctat
    37801 gcttttgaaa cagtgcagga tctgtttttc tttatcgggc ttggcatcgt ctcaattatt
    37861 gccgccatta cttacaccgt cggcaaaaaa gcctacggct atttggggct gggcgatcta
    37921 tttgtgctga ttttctttgg ctttgtagcg gtaatcggcg tgttctactt gcaggctcat
    37981 agcctaccta taatgattct gctccctgct ttcggttgcg gattgctgtc tgtagcagtg
    38041 ttaaatatca ataacttgcg tgatattaac caagaccgac aagctgggaa aaacactctc
    38101 attgtacgaa tcggtagcca aaacgggcga aaataccacg ttgcattgtt agtgctagcg
    38161 gtcatttctt atctgatttt tgcaatttct gaatttgaac attggtatag cttcattttt
    38221 ttgctgtctg taccgttact ggcaaaacac gctcgttttg tctatcagca taaagaccca
    38281 aaagaactct acccaattct agggcaaatg gcagggctgg cgttgctcac taatctatta
    38341 tttagtttgg gcattgtgtt agggtaagtt gcaaaatttt aacaaaacta aaccgcttgt
    38401 aataaaggat tacaagcggt tgttttttat ctaaatttac aattagttat ctagttcttc
    38461 aaagaatcca tctttttcgc cacgttgata ctccgaattg agcaacttat taataatgta
    38521 ccaatccgct tcaacctcta tatcgccttc tgcataagca cctaattcgt atggcggata
    38581 aacaaaagca atgccgtgag gggtaaagta gaattggtca gaaatacgga actctttttt
    38641 atcagcaaat ccattatagt tgccattttc atccacacgc acgctactgt aattttccca
    38701 aagaatgtct ttcagttgaa cttgattttt tgggctgatt aaatcattta agccaatgat
    38761 tgctttttta gctaaatcta cattgatata ttgcgtatag tgcataccgt gagccccacc
    38821 catataggtg taatgcatca tagtgaatgt agcaatatta ttgcgttgcc cgataaaagc
    38881 actggaaata tgatcatcat agccaatagc tggctcggtt ttcacacttt ctaccaaccc
    38941 ttgataaacc gcttcacgat gctttttaaa ctcttcttcg gttggatttt tcagctttct
    39001 gccttgttct tcattgtaat cataggcctg attaatcaaa agctggttaa gccaatcaaa
    39061 attggttttt ggtagagaca caaacgcact tactgtactt tcttctattg caaattcttg
    39121 tttcggatca acttggtgct taatcacctc tttcttatca aagattttca caatttcaac
    39181 atttaacgct gtgttttgct gagcgttctc taactctgat tttaattttt cattttctgc
    39241 tttcacccct gaaagttctg caacttcagc ctcttttttt gctaaatcag cctgagcatt
    39301 ttttaattct gtgcctaact gaacaatttg tttttcggct tctaataccg tttgggtcat
    39361 tttgccgtct tcacaagctg aaatcagaaa tactgagcca attaaaagtg ctaatagtga
    39421 ttttttcatc tctccctctt ttgtaaaaaa tacggtaaat atcaccgctt gttatacaga
    39481 ttaaaacaaa atcccctata ccatcaggca taggggaaat gattagtcgt ctaagaaact
    39541 gcgtaaggtt tccgaacggc tcgggtggcg aagtttgcgc agtgctttcg cctcaatttg
    39601 gcggatacgt tcacgagtta cgtcaaattg tttaccaact tcttcgagtg tgtggtctgt
    39661 gttcatatca ataccaaaac gcatacgcaa cactttcgct tcacgcgggg ttaagccctc
    39721 taacacttcg ttcgttgcca tacgcaggct ctccgcagtg gcggaatcca atggtaattc
    39781 aaggctttcg tcttgaatga aatcacctaa atgtgaatcg tcatcgtcac cgattggtgt
    39841 ttccattgaa atcggctctt tggcaatttt caatactttg cggattttat cttccggcat
    39901 tcccatacgt tctgccagtt cttccggcgt tgcctcacgc cccatttctt gtaaacattg
    39961 gcgtgaaata cggttgagtt tgttgatagt ttcaatcata tgcaccggaa tacgaattgt
    40021 acgggcttgg tcagcaatcg aacgggtaat cgcttgacga atccaccaag ttgcataagt
    40081 cgagaattta taaccacggc ggtattcaaa tttatccacc gctttcatta aaccgatgtt
    40141 tccttcttgg attaaatcta agaactgcaa gccacggtta gtgtattttt tcgcaatcga
    40201 aatcaccaaa cgtaagttag cttccaccat ctcttttttc gcacggcggg cttttaactc
    40261 accattggaa atacgcccgc caatttcacg aatttgagca atggttaagc ctgatgtttg
    40321 ctctaaattc tgtaagttag caatattgac acggatatta tccacataat tagctaattt
    40381 cggtgctgca tttttcttgg cattaatcgc tttttcaatc cacgcttcgc ttaattcgtg
    40441 cccttggaat gctttcaaga aatccgcttt tttcatgccg gcatattcca ctgcatagcg
    40501 ttgaatttga cgttcttcag tgcgaacctg cttcatcagt ttttgcatag aagcaaccaa
    40561 taagtcaaat tgcttcggca ccaaacggaa ttcacggaaa atatgagata aaatttcaat
    40621 ttgctctttc gattttttac tggttcgccc gtgtttttga atgaccaata acactttttc
    40681 atgttggctg cgtagggctt caaatttttc acgggcaagt tccgggtcaa ttgagctgtc
    40741 atcactgctg tctgaactgc tatcaccgtt ttcatcttcg ttttcgtcat ctacatcagg
    40801 cacatcagaa gattcttcat cttcacctaa agcagcctca atatcctcta acggtgcttc
    40861 ttctaaaata ttaggatcga caaatgctgt cactaaatca gaaaggcgca tttcaccggt
    40921 ttcgacttga gcatagcagg ctaacaggcc acttaaggct tccggatatt ccgcaatcgc
    40981 acattgaact tcgttaatcc cttcttcaat gcgtttagcg atatcaatct caccttcacg
    41041 ggttaaaagc tcaactgtcc ccatctcacg catatacata cgcacagggt cagtagttct
    41101 acctaactct gattctacgg ttgaaagcac tttggtggct tcttctacca catcttcatc
    41161 ggcgatattt tcagcgagta gtaaatcatc cgcatcaggg gcagcctcta aaacttggat
    41221 acccatatcg ttgatcatct gaataatatc ttcgatctgc tccgcatcca ccaactcttc
    41281 cggtaagtgg tcgtgcactt cagaaagcgt taaatatccc tgttcacgcc cttgactgat
    41341 cagaagttct aattgagatt gctgttctaa ttgttgatct gcttggtttt ccatagtcta
    41401 tccgtttatt atgcgagcaa aaatagtagt ggattatacc actaaatttg gttcgacttc
    41461 ataaattcac aaaaaaattc tatttttcta atttacacat tactttgatg cttatgagaa
    41521 cagagaggtg tagcaagaga gataaataac tttcttttta gatagaatta attattttct
    41581 tcgttcatca cttctgccaa atctccccta acccctcttt gctaaagagg ggaattattc
    41641 gagcttaaaa ttctactgaa acatcaaaag agcatactct tttttctcat catcggttaa
    41701 gcccacggtt cggtctttgg caattagctc ttctttgcgt aattccacta atttggcgta
    41761 gagaaaatcg agagtgtcaa taaatgttcg ttcgatattt tcgggtaact ctaaatgatc
    41821 ccaatttgcg agggcttcaa caatcttata ttggggatct tcccgataat gttcaagtag
    41881 cccgcccata ctgatacctg cattttgctg acaagttgcg acaatatcgg ttaataatgt
    41941 aaagccagga tctttcaagg aggctaaagc acttacatcg ggtacgaatt tcacaaaata
    42001 cggattttga atcaataacg caatcaacag ccgcattggc gtacgtttca ttttgaccgc
    42061 ttgatgtaaa ggcttctctg ccgctttttt cgtcggtaac agagcttcta tctgcgttgg
    42121 gtctaaaatg cctaatttct gtcctaaaat attgcgtaaa tacactcgca gcatctcgcc
    42181 cggaatacga ttaattaacg gcacagctaa agcagcgagc ttggattttc cctcttttga
    42241 agagagatcc acatccgcca gcaaactgtc aaataagaaa tcgcttaatg gcttggcatt
    42301 ctgtgccacg tactgctcaa atccttcttt accttgagaa cgaacaaagg tgtccgggtc
    42361 ttcgccatcg ggcaagaaaa taaatttcag ttggcgaccg tcttgcaaat aaggcaacgc
    42421 attttctaac gcccgccaag ctgcatctcg accggctcta tcgccatcat aacaacagac
    42481 aatttgctcg gtgcaacgaa acatttgctg aatttgttca ccggtagttg ccgtgcctaa
    42541 agaggcgact gcattgtcca cgccgaattg ggcaagggcg accacgtcca tatagccttc
    42601 caccacgaac agataatccg gtgtttcatt gactttcagt gcttgataca agccatataa
    42661 ctcactgcct ttatgataaa tcaccgtttc gggcgagttc atatatttcg ccccttgctc
    42721 atcattcggc aacacccgcc caccaaaggc aattacccgt ccacgcttat ctcgaatcgg
    42781 taacattacc cgattgcgaa atttatcgta aattcgaccg ctatcatttt tggttaaaac
    42841 gcccgtatcg agcaatttct gaatatcttc ttgtgattgc ccaaaagtgc gtagggctgc
    42901 atcaaaggca ttcggagcaa aaccaatttc aaagcgttcg ataatctctt cagacaaacc
    42961 tcgttgctgt aaatagcttt gtggctcaat ctggtgcgat aaattctgct ggtagaactt
    43021 cgccaccgct tccatcaatt cataaagatt acgcttagtt ttaaaattag cttgaggctt
    43081 gccgtcacgt tgaatcacat tctctctcgg tacttccagc ccgtgcatag ctgccagttc
    43141 ttcaatcgct tccggaaatt cgagtttgtc ataatccatc aaaaaggtga tgacattgcc
    43201 gtgtacgcca cagccgaaac aatggtaaaa ctgttttgat tggcttaccg aaaaggaagg
    43261 ggttttctcg tgatgaaaag gacagcaggc ttgataatct cgcccagcct ttttgagttt
    43321 gacccgactg ttgatgacct caacaatatc ggtgcgagcg ataagatcat caataaatga
    43381 acgtggaatt gtgcctttca ttgatttcct cctgctcttt gaatgataca agcggagcaa
    43441 ttttgcaaat tttttgcaaa aaacaaccgc ttgaaataga aacgttaaaa acaccaaaac
    43501 cgtgagccta acggaatcac ggtttcgata tagtttgcta accagcctaa ctaattagta
    43561 taaacgtgtg ttacgtgcgt tctcacggaa attacgttta gcgtgacgtt tagcaagtga
    43621 tgctttttca cgtttacgaa ttgtagttgg tttttcgtag aattcacgag cacgaacttc
    43681 agctaagata cccgcttttt cgcaagagcg tttgaaacga cgtaatgcta cgtcaaatga
    43741 ttcattttca cgaactttaa ttactggcat atgccatcac ctcagaaaaa tatgattaaa
    43801 ttaaaccgca cacaattttg gcggcataga acaaaaaagg tagtgcattc taccttaagc
    43861 actcacataa gtaaagtagt attgtggcat aaaaccgccg tattatgttg catttttcta
    43921 cagttcgaat aatttctcgg tcgaaaaact taatgccgga aagaccaccg aagttgccgg
    43981 ttcatcttct gccaccggct gaataccgat atatttaccg ttttccaaca caaaaatctg
    44041 aatagtgcgg gtttcgggag aaacaatcca atactctttc accccttgtt cctggtaaag
    44101 ctcgtattta tctttcatct cccttttggt attacccgga gaaaggattt ccaccactaa
    44161 atccggtgcc cctacacagc ctctttcatc taacttactg acatcacaaa ttacacaaag
    44221 atcaggctgc actacagttt tgacttttcc gttttcatcg ggaaaccgaa cgtcaaaagg
    44281 cgcagaataa atctggcatt ggtgattgtc aaaaacctct aaaaattttg ctgtcatctt
    44341 catagaaatt cgctgatgaa aacgagtagg agccggagac atcgccacaa ttttcccttt
    44401 gataatctca acccgctctt taaatttcca tagcaaataa tcagcgtaac tgtaactttt
    44461 ttgtaagtcc agttgattta agctggtaat ttcgttcatt ggtaataagc tcataccgcc
    44521 tcctttatca gaaatataaa gatattatgc cgaataatcc ctcaaattca acaaaacttt
    44581 cgctaaaaag agatagataa cctttatacc cttagtataa aatgacagca attttcattg
    44641 ttttaggata tgtcgatgca ccttaacttc aaaaaaatag acaactcaca tattgctctt
    44701 ttctataatg tactagtcgc cacatttttt gtcactgttt taacctttaa gaaaggttat
    44761 agttatgtgc caatggcatt aggtattatc gctacactta gtttcttatt ttatcgtttc
    44821 aaattaaaac aaaagtggtt acttgataaa gaggataaat tttttatttt ctcgcttatt
    44881 ggctattttc taacgtttgc aatgtctgct atttttaatg gcgatggcat tcgtgaaatt
    44941 gataatccta tccagatttt attgcttatc cctttaatca tcctctttag actttacccg
    45001 attaaaaaag aaactgtatt gcactttata ccgattggag cgttggtagc tggttgtata
    45061 gcaatatatc agaggtttat attaaatctt aaatttcctt tccctgaaat aatgcgtatt
    45121 caatcgggga acatagcaat attattatca ctatttagta tagcaattgc cttttattgg
    45181 ctttcaaaaa aaagaattaa aactggcatt gcctacctgg tttttgccat gtttgggtta
    45241 tttgccagta ttctaacagg agcaagaggc ggctggcttg cattcattcc catttgcttt
    45301 tttatcctat ttttaaattt aagacagcta aataagaaag ctattttcct gattctatta
    45361 gcacttatat cttcactctc attttttatc tccaaaccag aatttggcat acaaaaacga
    45421 tataatgcag ctaagaatga tattatcgta tttttagaaa aaggaaatag acattcatct
    45481 ctgggagctc gttttgatat gtgggaaaat gcgcttatcg gaatccgtga aaaaccgcta
    45541 ttaggacacg gtagcacagg ctatgaaaca ttcaaaaaga aacagattga aacaaaacaa
    45601 atggcaaaaa caacgcttag gtttaatagc ttacacaacc aatacctaga agcctttgtg
    45661 aaaagaggtg tagttggttt tatggcgcta atggctattt taattattcc atttgttatt
    45721 tttgccaaac gattaaaggc aaaaaataga gaggtaaaat gtatggcgat attaggcatt
    45781 gtacatatta tttcgcattc attctttttc ctaagccaat catttttagc ccataattca
    45841 ggctcattat tctatttctt tgtgttaatt ttactctacc atttagtcaa acagaacgaa
    45901 gagataatat gataaaacaa tagaagaaag ttgggaatat aaccgaggtg gtaacttcat
    45961 cttctaccac aggataaatg tcgggatatt tcctcttttt ctgcttctta ctactaattc
    46021 cgattagcca aataccattc cactgtttta cgcaagccac tttcaaaagt ttctttcggt
    46081 ttccagtcga gttccttttc gatttttgaa gtatcaattg catagcggaa atcgtggcca
    46141 gggcgatctt gcacataagt aattaaatca gcatattgtc ctacaacaag cgggttattt
    46201 ggcaccattt cttgcaaaat agaacagata gaacgaacca cttcgatatt ggttttttca
    46261 ttatgcccgc caatattgta ggtttctccg atttgccctt tttgcaacac caaatagagg
    46321 gcacgaatat gatcttccac aaacagccaa tctctgacct gcaagccgtt gccgtaaaca
    46381 ggtagggatt taccttctaa ggcatttaaa atcattaacg gaataagttt ttcgggatat
    46441 tggtatgccc cataattatt ggaacagttg gtgatgacag tcggtaaacc gtaggtgcga
    46501 tgccaagccc gagccagatg atcgctggca gctttagatg ccgaataggg gctacttgga
    46561 ttataagggg ttttctcggt aaataattcc tcgcttttgg ctaaatcacc atagacctcg
    46621 tcggtcgaga tatgtagaaa gcgaaacgcc gatttccttg gctcaggtaa cgtgtcccaa
    46681 taggctctcg ctgcctctaa taaagtataa gtgccgacaa tattggtttg aataaaatct
    46741 gctgccccag aaatagagcg atcaacatgg ctttccgctg ctaagtgcat taccacatca
    46801 ggctgatatt tgccaaaaat ctcagaaatt tgaccgcttg cacaaatatc tgctttttca
    46861 aaatggtagc gttcgtgatg tgcgacactc tccaatgagg ctaaatttcc cgcataggtg
    46921 agcttatcca cattgataac tgtgtgtgga gtatgttcaa tcagatagcg aactaatgca
    46981 gatccgataa aaccggctcc gccagtgatg aggatgatca taaaggtgaa tatgaaattt
    47041 gattcacgaa atttcgtttg tatttaatat ggctttgaat attcttttca gcgtcttttt
    47101 tatcccaaat ttgcaattcc caaggataat aaaagttact tgaattctta aaataaatat
    47161 gaatacccac atattcatct ttatctctca aataccaatt ttttagtcca tatttttctt
    47221 gccaataatc taatgactcc attacttgct gaatcacttc actagaaaca ataatacgag
    47281 ctccaaaaat atcgttgaga atgctattta ctggataacc ttcactacgc tgtttaaaac
    47341 gctcgatttt atctaaaatc gattctgagg tttttactcg gtaaaaataa gaaattccct
    47401 ctaaatctgc acgatataaa taatcattaa tagattcgtg taaattaaga cgataagcta
    47461 aaatatgtgg cgtaggcact ttggcaaaag tatgcttaag attcactttt tcaatcttac
    47521 ctgtttcaaa gtagtctttc gaaaaagcta agtgcaactt gttgatttca tcaatgagtt
    47581 tttctatttt ctcaagcatg ctattcactc tctaatttat tatcttgccc caaatccagt
    47641 tagcattgtt ttcaatgttt taaaaataat taaaatatca agccataaag aaaaatgctt
    47701 aatatagtag aagtcatgtt ctacttttac ttttgtatca tcaacatctg ccgcataacc
    47761 ttggacgacc tgagcccaac cggaaatacc cggtttaacg atatggcgat aattatagaa
    47821 tggaatttcc tcttcaaatt tatctacaaa ggctgtctgt tctgggcgag gaccaattaa
    47881 gctcatatca ccttttaata cattaaaaaa ctgaggtagc tcatcaatac gagttttacg
    47941 gataaatttc ccaatacgag ttaccctcat atccgcactc gaagcaaact gtgcatcatc
    48001 tttttcggag tctttacaca tactacgaaa tttataaata ttaaactcct ttccaccttg
    48061 cccaacgcgt ttttgaataa acattgctcc accttcactt tctaagcgaa tagcaatagc
    48121 ggtgattgtc ataataggta aagtaatggg aaacgtagca acaatcaatg caatatcaat
    48181 gatacgcttc actaatgagt aaattggaga aggaagtaat gaacctaagt cattttcata
    48241 catatggcga attttgacac gcccggttaa agattcctca agctggcgaa cgttatatac
    48301 aggaatacca ttcaatgtac atttcgctaa aaatttatgc cattctgcgg acaaatcagg
    48361 atagtgtaaa tctaccgcaa tagagttaat tctcttttcc cccaatattg gttcacttaa
    48421 ttgaatccac tctacattct gaattcggtt caaattgata gctcttccga atggaaccaa
    48481 agcgatttta gggataatcc aacttcttga aagaaaataa ccaataaaac aaaatagaat
    48541 tgtgagtata aagctcgtac ctagcaatgt attagaataa tcaaatctaa atattgttaa
    48601 cacgattaat aaaaccgcat accaagaaat aacggtggaa aaaacaaaac ttgctgactt
    48661 attacctgga tatttcatta acactcttaa gctgatagct atcattacaa aggcaagaga
    48721 agtcgctata atcgtattag aacgagtttc aatagaatta aatttctctc cccaaaaata
    48781 gatagcgggt aagacacttg agaacataac gcccaaaata ctttgaacag ctgtactaaa
    48841 aaagatacgt tcataccaac gagagtgtct tttcttttgc tgaatgctca taatttatcc
    48901 ttttcttaat ttcttataaa gtcttcctaa aagagatcta ggcaataacc gtggtaaggc
    48961 tctaagtata aaaaacatgc ttgatgagat tattgattgt aatcccaact cttttttcaa
    49021 ttttgctaat tggtactcac tcttaatgta attccaccct ttacgccgag cgtacattgc
    49081 agaacctgaa cgaacattta ccagtacatc tggtaaatta tacacctcat atttctgtgt
    49141 aataactcgt aaccataaat tgtaatcttc catataaaga tgatgctgat agcctccaac
    49201 atgctcgatc acagattttt tataggctac tgccatatgg ttaaaaggat ttcttagtaa
    49261 tgctgaaata cgaatttcat catcattaat gggcacttgt tttataccca gagaattaga
    49321 cattgtttcg tcaaattctt caacttgtcc ccccaataaa accacatcag gatttttact
    49381 aataaaatca atttgctttt caaatcgaga tggtaagcaa atatcatcag tatccattct
    49441 aaacacccac tcattagagc agtgttttaa gccttcattt aaggccggcc taaacccaca
    49501 ttttgtggta aactaacaac aacaagcggt aatttttcag taaaatgttg cacaattcgc
    49561 tctaaatctc caggaattat accatcaaaa accacaacaa tttcacttgc tggtaaagtt
    49621 tgggatacta aagaatctaa acacatctct aaataagctg gtttttcttt a
//
LOCUS       DANLXK010000003        45142 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.003, whole genome shotgun sequence.
ACCESSION   DANLXK010000003 DANLXK010000000
VERSION     DANLXK010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 45142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45142
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            128..631
                     /locus_tag="PXD88_000109"
     CDS             128..631
                     /locus_tag="PXD88_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL6279736.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            647..3508
                     /locus_tag="PXD88_000110"
     CDS             647..3508
                     /locus_tag="PXD88_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL6279737.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            3583..5709
                     /locus_tag="PXD88_000111"
     CDS             3583..5709
                     /locus_tag="PXD88_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL6279738.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            5721..7157
                     /locus_tag="PXD88_000112"
     CDS             5721..7157
                     /locus_tag="PXD88_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL6279739.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
     gene            7398..8396
                     /locus_tag="PXD88_000113"
                     /pseudo
     CDS             7398..8396
                     /locus_tag="PXD88_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            8413..9156
                     /locus_tag="PXD88_000114"
     CDS             8413..9156
                     /locus_tag="PXD88_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6279740.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            9311..10369
                     /locus_tag="PXD88_000115"
     CDS             9311..10369
                     /locus_tag="PXD88_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL6279741.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(10490..11032)
                     /locus_tag="PXD88_000116"
     CDS             complement(10490..11032)
                     /locus_tag="PXD88_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL6279742.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
     gene            complement(11184..12695)
                     /gene="glpK"
                     /locus_tag="PXD88_000117"
     CDS             complement(11184..12695)
                     /gene="glpK"
                     /locus_tag="PXD88_000117"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL6279743.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            complement(12699..13484)
                     /locus_tag="PXD88_000118"
     CDS             complement(12699..13484)
                     /locus_tag="PXD88_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL6279744.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            13697..14056
                     /locus_tag="PXD88_000119"
     CDS             13697..14056
                     /locus_tag="PXD88_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL6279745.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            complement(14104..15426)
                     /locus_tag="PXD88_000120"
     CDS             complement(14104..15426)
                     /locus_tag="PXD88_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6279746.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            15575..16399
                     /gene="dapF"
                     /locus_tag="PXD88_000121"
     CDS             15575..16399
                     /gene="dapF"
                     /locus_tag="PXD88_000121"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL6279747.1"
                     /translation="MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQ
                     LLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKG
                     KMVLSLQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHC
                     VLQVDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACG
                     SGACGTVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
     gene            complement(16570..17112)
                     /locus_tag="PXD88_000122"
     CDS             complement(16570..17112)
                     /locus_tag="PXD88_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL6279748.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            17236..17559
                     /locus_tag="PXD88_000123"
     CDS             17236..17559
                     /locus_tag="PXD88_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL6279749.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            complement(17622..19067)
                     /gene="xylB"
                     /locus_tag="PXD88_000124"
     CDS             complement(17622..19067)
                     /gene="xylB"
                     /locus_tag="PXD88_000124"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL6279750.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(19220..20539)
                     /gene="xylA"
                     /locus_tag="PXD88_000125"
     CDS             complement(19220..20539)
                     /gene="xylA"
                     /locus_tag="PXD88_000125"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL6279751.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            20781..21782
                     /gene="xylF"
                     /locus_tag="PXD88_000126"
     CDS             20781..21782
                     /gene="xylF"
                     /locus_tag="PXD88_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6279752.1"
                     /translation="MKLKSKLLAIATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            21849..23363
                     /gene="xylG"
                     /locus_tag="PXD88_000127"
     CDS             21849..23363
                     /gene="xylG"
                     /locus_tag="PXD88_000127"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL6279753.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            23367..24494
                     /locus_tag="PXD88_000128"
     CDS             23367..24494
                     /locus_tag="PXD88_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL6279754.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(24510..25040)
                     /locus_tag="PXD88_000129"
     CDS             complement(24510..25040)
                     /locus_tag="PXD88_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6279755.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(25056..25319)
                     /locus_tag="PXD88_000130"
     CDS             complement(25056..25319)
                     /locus_tag="PXD88_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6279756.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
     gene            25503..25985
                     /locus_tag="PXD88_000131"
     CDS             25503..25985
                     /locus_tag="PXD88_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6279757.1"
                     /translation="MKIECKKVIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAW
                     EADTREPPISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVV
                     VIKAKLQEAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA
                     "
     gene            25997..26248
                     /locus_tag="PXD88_000132"
     CDS             25997..26248
                     /locus_tag="PXD88_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279758.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(26538..28403)
                     /locus_tag="PXD88_000133"
     CDS             complement(26538..28403)
                     /locus_tag="PXD88_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL6279759.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(28543..29058)
                     /locus_tag="PXD88_000134"
     CDS             complement(28543..29058)
                     /locus_tag="PXD88_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL6279760.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            complement(29070..30209)
                     /locus_tag="PXD88_000135"
     CDS             complement(29070..30209)
                     /locus_tag="PXD88_000135"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL6279761.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            complement(30313..32172)
                     /locus_tag="PXD88_000136"
     CDS             complement(30313..32172)
                     /locus_tag="PXD88_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL6279762.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            32474..33024
                     /locus_tag="PXD88_000137"
                     /pseudo
     CDS             32474..33024
                     /locus_tag="PXD88_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(33068..34003)
                     /locus_tag="PXD88_000138"
     CDS             complement(33068..34003)
                     /locus_tag="PXD88_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL6279763.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(34014..34811)
                     /locus_tag="PXD88_000139"
     CDS             complement(34014..34811)
                     /locus_tag="PXD88_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL6279764.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            complement(34854..35501)
                     /gene="hxpB"
                     /locus_tag="PXD88_000140"
     CDS             complement(34854..35501)
                     /gene="hxpB"
                     /locus_tag="PXD88_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL6279765.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            complement(35564..35944)
                     /gene="gutM"
                     /locus_tag="PXD88_000141"
     CDS             complement(35564..35944)
                     /gene="gutM"
                     /locus_tag="PXD88_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL6279766.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            complement(36113..36901)
                     /gene="srlD"
                     /locus_tag="PXD88_000142"
     CDS             complement(36113..36901)
                     /gene="srlD"
                     /locus_tag="PXD88_000142"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL6279767.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            complement(36949..37347)
                     /gene="srlB"
                     /locus_tag="PXD88_000143"
                     /gene_synonym="gutB"
     CDS             complement(36949..37347)
                     /gene="srlB"
                     /locus_tag="PXD88_000143"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL6279768.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            complement(37392..38393)
                     /locus_tag="PXD88_000144"
     CDS             complement(37392..38393)
                     /locus_tag="PXD88_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL6279769.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            complement(38424..38978)
                     /gene="srlA"
                     /locus_tag="PXD88_000145"
     CDS             complement(38424..38978)
                     /gene="srlA"
                     /locus_tag="PXD88_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL6279770.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            complement(39216..39524)
                     /locus_tag="PXD88_000146"
     CDS             complement(39216..39524)
                     /locus_tag="PXD88_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL6279771.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            complement(39526..39894)
                     /locus_tag="PXD88_000147"
     CDS             complement(39526..39894)
                     /locus_tag="PXD88_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279772.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            complement(39869..40975)
                     /locus_tag="PXD88_000148"
     CDS             complement(39869..40975)
                     /locus_tag="PXD88_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL6279773.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(41215..42258)
                     /locus_tag="PXD88_000149"
     CDS             complement(41215..42258)
                     /locus_tag="PXD88_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL6279774.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(42362..42646)
                     /locus_tag="PXD88_000150"
     CDS             complement(42362..42646)
                     /locus_tag="PXD88_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279775.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(42676..42861)
                     /locus_tag="PXD88_000151"
     CDS             complement(42676..42861)
                     /locus_tag="PXD88_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL6279776.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(42858..43424)
                     /locus_tag="PXD88_000152"
     CDS             complement(42858..43424)
                     /locus_tag="PXD88_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL6279777.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGVAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
     gene            43533..44486
                     /gene="msrP"
                     /locus_tag="PXD88_000153"
     CDS             43533..44486
                     /gene="msrP"
                     /locus_tag="PXD88_000153"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL6279778.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            44486..45070
                     /locus_tag="PXD88_000154"
     CDS             44486..45070
                     /locus_tag="PXD88_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL6279779.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
BASE COUNT        13393 a         9473 c         9244 g        13032 t
ORIGIN      
        1 acaaaaaata caatttaagc tacaaaaaac aacaaaaaac aacaaaaaac acgacaataa
       61 gatcgagtaa tgattatatt atgttataat ttttgaccta atttagaata attatcgagt
      121 gcaaattatg aatcaatctt attttaactt actaggaaac attacttggc tatggatgaa
      181 ctcctccctc cacaaagaat ggagctgtga actactagca cgcaatgtga ttcctgcaat
      241 tgaaaatgaa caatatatgc tacttataga taacggtatt ccgatcgctt attgtagttg
      301 ggcagattta aaccttgaga ctgaggtgaa atatattaag gatattaatt cgttaacacc
      361 agaagaatgg cagtctggtg acagacgctg gattattgat tgggtagcac cattcggaca
      421 ttctcaatta ctttataaaa aaatgtgtca gaaataccct gatatgatcg tcagatctat
      481 acgcttttat ccaaagcaga aagaattagg caaaattgcc tactttaaag gaggtaaatt
      541 agataaaaaa acagcaaaaa aacgttttga tacatatcaa gaagagctgg caacagcact
      601 taaaaatgaa tttaatttta ttaaaaaata gaaggagaca tcccttatgg gaactagact
      661 tacaacccta tcaaatgggc taaaaaacac tttaacggca accaaaagtg gcttacataa
      721 agccggtcaa tcattaaccc aagccggcag ttctttaaaa actggggcaa aaaaaattat
      781 cctctatatt ccccaaaatt accaatatga tactgaacaa ggtaatggtt tacaggattt
      841 agtcaaagcg gccgaagagt tggggattga ggtacaaaga gaagaacgca ataatattgc
      901 aacagctcaa accagtttag gcacgattca aaccgctatt ggcttaactg agcgtggcat
      961 tgtgttatcc gctccacaaa ttgataaatt gctacagaaa actaaagcag gccaagcatt
     1021 aggttctgcc gaaagcattg tacaaaatgc aaataaagcc aaaactgtat tatctggcat
     1081 tcaatctatt ttaggctcag tattggctgg aatggattta gatgaggcct tacagaataa
     1141 cagcaaccaa catgctcttg ctaaagctgg cttggagcta acaaattcat taattgaaaa
     1201 tattgctaat tcagtaaaaa cacttgacga atttggtgag caaattagtc aatttggttc
     1261 aaaactacaa aatatcaaag gcttagggac tttaggagac aaactcaaaa atatcggtgg
     1321 acttgataaa gctggccttg gtttagatgt tatctcaggg ctattatcgg gcgcaacagc
     1381 tgcacttgta cttgcagata aaaatgcttc aacagctaaa aaagtgggtg cgggttttga
     1441 attggcaaac caagttgttg gtaatattac caaagccgtt tcttcttaca ttttagccca
     1501 acgtgttgca gcaggtttat cttcaactgg gcctgtggct gctttaattg cttctactgt
     1561 ttctcttgcg attagcccat tagcatttgc cggtattgcc gataaattta atcatgcaaa
     1621 aagtttagag agttatgccg aacgctttaa aaaattaggc tatgacggag ataatttatt
     1681 agcagaatat cagcggggaa cagggactat tgatgcatcg gttactgcaa ttaataccgc
     1741 attggccgct attgctggtg gtgtgtctgc tgctgcagcc ggctcggtta ttgcttcacc
     1801 gattgcctta ttagtatctg ggattaccgg tgtaatttct acgattctgc aatattctaa
     1861 acaagcaatg tttgagcacg ttgcaaataa aattcataac aaaattgtag aatgggaaaa
     1921 aaataatcac ggtaagaact actttgaaaa tggttacgat gcccgttatc ttgcgaattt
     1981 acaagataat atgaaattct tactgaactt aaacaaagag ttacaggcag aacgtgtcat
     2041 cgctattact cagcagcaat gggataacaa cattggtgat ttagctggta ttagccgttt
     2101 aggtgaaaaa gtccttagtg gtaaagccta tgtggatgcg tttgaagaag gcaaacacat
     2161 taaagccgat aaattagtac agttggattc ggcaaacggt attattgatg tgagtaattc
     2221 gggtaaagcg aaaactcagc atatcttatt cagaacgcca ttattgacgc cgggaacaga
     2281 gcatcgtgaa cgcgtacaaa caggtaaata tgaatatatt accaagctca atattaaccg
     2341 tgtagatagc tggaaaatta cagatggtgc agcaagttct acctttgatt taactaacgt
     2401 tgttcagcgt attggtattg aattagacaa tgctggaaat gtaactaaaa ccaaagaaac
     2461 aaaaattatt gccaaacttg gtgaaggtga tgacaacgta tttgttggtt ctggtacgac
     2521 ggaaattgat ggcggtgaag gttacgaccg agttcactat agccgtggaa actatggtgc
     2581 tttaactatt gatgcaacca aagagaccga gcaaggtagt tataccgtaa atcgtttcgt
     2641 agaaaccggt aaagcactac acgaagtgac ttcaacccat accgcattag tgggcaaccg
     2701 tgaagaaaaa atagaatatc gtcatagcaa taaccagcac catgccggtt attacaccaa
     2761 agataccttg aaagctgttg aagaaattat cggtacatca cataacgata tctttaaagg
     2821 tagtaagttc aatgatgcct ttaacggtgg tgatggtgtc gatactattg acggtaacga
     2881 cggcaatgac cgcttatttg gtggtaaagg cgatgatatt ctcgatggtg gaaatggtga
     2941 tgattttatc gatggcggta aaggcaacga cctattacac ggtggcaagg gcgatgatat
     3001 tttcgttcac cgtaaaggcg atggtaatga tattattacc gattctgacg gcaatgataa
     3061 attatcattc tctgattcga acttaaaaga tttaacattt gaaaaagtta aacataatct
     3121 tgtcatcacg aatagcaaaa aagagaaagt gaccattcaa aactggttcc gagaggctga
     3181 ttttgctaaa gaagtgccta attataaagc aactaaagat gagaaaatcg aagaaatcat
     3241 cggtcaaaat ggcgagcgga tcacctcaaa gcaagttgat gatcttatcg caaaaggtaa
     3301 cggcaaaatt acccaagatg agctatcaaa agttgttgat aactatgaat tgctcaaaca
     3361 tagcaaaaat gtgacaaaca gcttagataa gttaatctca tctgtaagtg catttacctc
     3421 gtctaatgat tcgagaaatg tattagtggc tccaacttca atgttggatc aaagtttatc
     3481 ttctcttcaa tttgctagag cagcttaatt tttaatgatt ggcaactcta tattgtttca
     3541 cacattatag agttgccgtt ttattttata aaaggagaca atatggaagc taaccatcaa
     3601 aggaatgatc ttggtttagt tgccctcact atgttggcac aataccataa tatttcgctt
     3661 aatccggaag aaataaaaca taaatttgat cttgacggaa aagggctttc tttaactgct
     3721 tggcttttag ctgcaaaatc gttagcgttg aaagcgaaac acattaaaaa agagatttcc
     3781 cgcttacact tggtgaattt accggcatta gtttggcaag ataacggtaa acatttttta
     3841 ttggtaaaag tggataccga taataaccgc tatttaactt acaatttgga acaagatgct
     3901 ccacaaattc tgtcacaaga cgaatttgaa gcctgctatc aagggcagtt aattttggtc
     3961 acgtccagag cttccgtagt aggtcaatta gcaaagttcg atttcacctg gtttattccg
     4021 gcggtgatca aataccgaaa aatctttcta gaaaccttga ttgtttcgat ctttttgcaa
     4081 atttttgccc taattacacc gctattcttc caagttgtta tggataaagt actggtgcat
     4141 cgaggttttt caaccttgaa tatcattacg gttgccttag ctattgtgat catctttgaa
     4201 attgtactaa gtggtttgag aacctatgtt ttttctcata gcactagccg tattgatgtt
     4261 gaattaggcg ctaaattatt tcgacattta ttatcactac ccatttctta ttttgaaaac
     4321 agacgagttg gagatacagt cgctagggtt agagaattag atcaaattcg taatttcctt
     4381 accggacaag cattaacctc ggtgttagat ctcttattct cttttatctt ttttgccgta
     4441 atgtggtatt acagcccaaa attaaccttg gtaattcttg gttcattgcc ctgctatatt
     4501 ttatggtcaa tttttattag tccgatttta agacggcgtt tagatgagaa atttgcccga
     4561 agtgctgata accaagcatt cttagttgag tcggtaacag ccatcaatat gattaaagcg
     4621 atggcggttg ctccacaaat gacggataca tgggataaac agctggcaag ctatgtttca
     4681 tcaagtttcc gtgtcaccgt attagcaacc attgggcaac aaggtgtaca acttattcaa
     4741 aaaaccgtta tggtgattaa cctttggtta ggggcacact tagttatttc aggcgatctg
     4801 agtattgggc aattaattgc ctttaatatg ctatcagggc aagtgattgc accggtgatt
     4861 cggctggctc agctctggca agatttccaa caagttggga tttccgtcac tcgcttaggt
     4921 gatgttttaa actctccaac cgaacaatat caaggcaaat tatcactacc agaaataaaa
     4981 ggcgatatct catttaaaaa tatccgcttt agatataaac cagatgcacc aactatttta
     5041 aataatgtga atttagaaat taggcaagga gaagtgattg ggattgttgg acgttccggt
     5101 tcaggcaaaa gtactctgac taaattactg caacgttttt atattcctga aaatgggcag
     5161 gttttgattg atggacatga tctagcctta gctgatccaa actggctacg ccgtcaaata
     5221 ggtgtagtgc tgcaagataa tgtgttatta aaccgcagta tccgagaaaa tattgcgcta
     5281 tcagatccag gaatgccaat ggagcgagta atttatgcag caaaattagc aggggctcac
     5341 gattttattt cagaattgcg tgaaggttat aacaccattg tgggtgaaca aggagcgggg
     5401 ctttcaggcg ggcaacgcca acggattgcg attgctcgag ctttggtaaa caacccgaaa
     5461 atcctgattt ttgatgaggc aaccagtgcc ctcgattacg aatctgagca tattattatg
     5521 caaaatatgc aaaaaatatg ccaaggcaga accgtgattt tgattgcaca tcgtttatcg
     5581 accgtcaaaa atgcggatcg aattattgtg atggaaaagg gggaaattgt tgagcaaggc
     5641 aagcaccacg aattactgca aaacagtaac ggactttatt cctacttaca ccaattacaa
     5701 cttaattaag aaggaaaaca atgaaaatat ggcttagtgg tatttatgaa tttttcctac
     5761 gctataaaaa catttgggca gaagtatgga aaattcgtaa agaattagac cacccaaaca
     5821 gaaaaaaaga cgaaagtgaa tttttaccgg cacatttaga actgattgaa accccggttt
     5881 ctaaaaaacc acgtctaatt gcttatttga ttatgctatt tttagttgtg gcaattgtgc
     5941 ttgccagtgt aagcaaagtt gaaattgtgg cgactgctcc cggtaaatta acttttagtg
     6001 gcagaagtaa agaaattaaa ccgattgaaa acgccattgt acaagaaatt ttcgttaaag
     6061 atgggcagtt tgtggaaaaa gggcaattat tagtcagctt aactgcattg ggttctgatg
     6121 cagatatcaa aaagaccatg gcttcacttt ctttagctaa actggagaac tatcgctacc
     6181 aaactttgct tactgccatt gaaaaagagt ccttgccggt gattgattta tctagaaccg
     6241 aatttaaaga ttcatcggaa gaagatcgac tacgtattaa acacttaatt gaggagcaat
     6301 acaccacttg gcaaaaacaa aaaacacaga aaactttagc gtataagcgt aaagaggctg
     6361 aaaaacaaac aatatttgcc tatgtccgta aatatgaagg tgcaacacgt attgaacaag
     6421 aaaaattaaa agactttaag gcactttata aacagaagtc tttatctaag cacgaacttc
     6481 ttgcgcaaga aaataaatta attgaggctc agaatgagct agctgtttat cgctcaaaat
     6541 taaatgaatt agaaaatgat ctactcaatg taaaagaaga acttgaattg atcacgcaat
     6601 tctttaaaag cgatgtgttg gaaaaattaa agcaacatat tgaaaatgaa cgccaacttc
     6661 ggctcgagtt agaaaaaaat aatcaacgca gacaggcctc gatgatcaga gcaccggttt
     6721 ccggtacggt tcagcaactg aaaattcaca ctataggtgg tgttgttacg actgctgaaa
     6781 ccttgatgat cattgtgccg gaagacgatg tgttagaggc caccgctctg gttccaaaca
     6841 aagatatcgg ctttgttgca gcagggcagg aggtgattat taaagtggaa actttccctt
     6901 atacacgcta tggttatcta actggtcgaa ttaaacatat tagcccggat gcgattgaac
     6961 aacctaatgt aggcttagtt tttaatgcaa ctatagctat agataggaag aatctaacat
     7021 cgcctgatgg gcgaaaaatt gatttgagtt caggtatgac aataactgct gaaatcaaaa
     7081 ccggtgaacg gagtgtaatg agttatttac tcagcccatt agaagaatct gtcacagaaa
     7141 gtttaaggga acgctaatcg aaccaaaaca aagccataaa agccattttg agcttttatg
     7201 gctttatttt ttagtccaca agcggtcaaa aaagcccaat tttttacact tttataacaa
     7261 attgttctaa ctaaaaatta ctaattcttt tcttttataa gacgaatcct ctattttcat
     7321 ttcattaaca ttgaactaga aaaggggatt tatgagccta agcattacga atctttctct
     7381 tggctaccgc aaaaatcagc aaaggcttat ttgaaaagca cggtgtgcag gtggaaaaac
     7441 cggtgatgtt tcgcagctgg gctcagttgg tggaagcctt tttaagtggc aatgtgaacg
     7501 tggtgcatct gctttcgcct atgagtttgt gggcgaaata tggagcaaat gctccggtga
     7561 aagcggtaat gtggaatcac ttggcaggtt cggctttaac ggttcgccct gaaatcaaca
     7621 gtattgccga actctccggc aaaacggtag caattccgtt ttggtattca attcataata
     7681 tcgttttgca acgattatta cgagaaaatg gcttgaaaat caccgaaaaa gagccgaaaa
     7741 gcggtgaagt gcgattaagt gtaatggctc cgtcagatat ggtggcagcg ttggcaagtg
     7801 aggcaatttc cggctttatt gtggcagagc cgttcaatgc gttagcggaa gccaaaggtg
     7861 tggggaaggt gctgcgtttt agtggcgatg tgtggaaaga tcacgcctgc tgtttaaccc
     7921 taatgcacga atacgatatt caacaccgcc cggaatgggt gcaaaaagtg gtgaatgtct
     7981 taaccgaagc ccaagtgtcc acgcttgcca accgtgcaga aaccgctcaa ttattggctc
     8041 ggggcagcgg ctacacgccg cacgatcaaa aagtgctgga aaaggtactg gctccaaccc
     8101 aagctcagtg ggataaatat atcgaaacag gggcaattca aaaccctcag tggcaccaac
     8161 agcgaatcgg tttccaaccg tatccgttcg attcctatat ggaagagctg gtcaaaatgc
     8221 tcaaacagac ccacattgcc ggcaataatg cgtttttaca acagcttgac ccggtagagg
     8281 cagcgaaagc gattaacgag ccgacctttg tgcgaaaagc gattgagcaa ggcggttggg
     8341 ttgaaacctt taatttacaa accggttgga caagaaccga gcaaattagt gtataagcga
     8401 taggaacgaa cgatgaaaca gaaatatatt tacggcttag ccggtttatt actgctactt
     8461 ttaggttggc agcttggcac agccttgtta agccaacggt tgccgatggc gtcaatgtta
     8521 gctccggcaa aaacctggga aagttttact tggctgattt cctccggcga aatttttccg
     8581 cacttatggg cgagtttgca acgcattgct gtcgggctac tcgctgcgtt agtgattggt
     8641 gtaccgctgg gcttattgct cggcttctcc aagcaccttg aaatgctttg cacgccgtca
     8701 ttccaactac tacgtatgat ttcgccactt tcgtggatgc cgattatcgt gatgttactt
     8761 ggtgtaggcg atttgccgat ttatttttta ctggcgtttg ccaccgtttg gtcgttgatt
     8821 atttccacca cctcaggggt aaaaagcatt gatccacaat ggttacaact gggtagagta
     8881 atgtcggcta cccgcaaaga actgctgtgc aaaattgttg taccggctat taccggacac
     8941 gttctcaccg gtttacgtgt ggcggttggg attgcgtggg tggtgctggt accgtgcgaa
     9001 atgctaggcg tgaatcaagg actcggctat tttattttag acacccgaga ccgattagcc
     9061 tattccgaac tgatggcggt aattataatt atcggcttaa tcggctgggc gttggatagc
     9121 ttaatccgct tggctttagc gaaaggcggc agataaattg acaagcggtc gaaaaattgc
     9181 atttttttgc aaaaaatcga ccgcttgttt attcccaaaa agcatattac cttaatttat
     9241 tttatttcta gggcataaaa aagcgattta agatagcgac aaagtaaact aattatacga
     9301 ggtaaacaca atgtcggttc tttcatcttc ttttattcaa tggcttcagc agaacgccga
     9361 aaatttagat caatctaacg aacgagcgga tttactcatt ccacaaattg ccgcactagg
     9421 gctatataaa atcggcgtgc cggaaacgct tggcggcagc ggtggcactt tggttgatgc
     9481 gatcaaagcc gttaccgaac tgggtaatca ctcgctggct gcggcatttg tttcgtgggg
     9541 acatcgtacc tttatcgagc atattatcgc ctcaaaaaat cctattcccc gccaaagcta
     9601 tttggcggat ctgctaaatg gcaatttaac cgcaggaaca ggtttatcca atgcgatgaa
     9661 atttctctcc ggcattgaag agttgaatgt gaatattcgt gaagaaaacg gtaaacgcta
     9721 tttaaatggc cgcctgcctt gggtaaccaa tttacgttca taccgctttg ttgctagttt
     9781 cgttgccggt tttcaagacg aacgcaaacc gctagtgatt gcaattccct ccaccgccaa
     9841 aggcttaacc cgcaccaaag aattggaatt tatcgcattg caaggcacga atactacctc
     9901 tctcgtattt gagaatgtgg aattacaaga tgaatggatt ttggctgatg acgcgcctga
     9961 gtttttagca gccactcgcc ctgcgttctt aggtttacaa tttggtttgc cctttggctt
    10021 ggttgaacgt agtttggcgg aaatcgaaaa atcgctccct ttccgtgcaa ttctcgcctc
    10081 tgagtggcaa gctcaagttg atgccctcaa cgatattaaa actcgtctgt ttaatggctt
    10141 aaatgaagaa ggttattttg tgcgtaatcc gaaagagctt ttccaagcga gaattgacat
    10201 tgtcaatgtc gtcgcccaaa ctattctgct agaactgcaa gcgagtggcg gacgtggcta
    10261 tctgaaaaat gatacttcag gcttcagccg ccgttggaaa gaagcggcat ttctgcccgt
    10321 tgttacgcca agtgcggtac agctgagaat ggtgctggcg aatagttaag cggataagag
    10381 acaaattgtt gcctctttta ttttgcaaaa aatagtctaa atataaccgc ttgcaataaa
    10441 aataaaaaag gatgcatttt ttatgcttcc tcaattttac ggctatctat tatgcaaaag
    10501 gctgcaattc agggttaatt ggaatttcgg caatgttgtt aacgtagtta cataatgttg
    10561 ccaagctcac gcctaaaatc acatcaatcg cattttgttg gttgtaacct gcggcaaaaa
    10621 attcgtttaa ttgggcttcg gttaatttgg ctttttgtaa cattactgca agggtgaagc
    10681 gagccagagt gtctaatttg ttatcgtcta tgcgagccgt ggcacgtaaa gcatttacca
    10741 cttcttcagg catttttaat gcttttaagg cgattttagt atgacctgcc acgcagaaac
    10801 cacagccgtt gaccactgct gcggtgattt gtaccacttc acgttcttca gcggttaagc
    10861 tgttacgact attaatacca cccacagtgc ggtaagtttc cagtgctgtt ggtgcgttgg
    10921 ctaatacgcc gatcagattt gggataaaac cgtttgcttg ttgcactgct tttagggctt
    10981 cttgtgccgt ttcaggagcg gattcaatag tgtgaatttg aaattgagac ataaatgttc
    11041 cttatcaggt tgtttattgg tgtggctcat cataaagaaa aggctaattt agaacaaatc
    11101 aaaatcacta tttaatataa ctaaaagatc ttaaagggag tatagttgcc tatactccct
    11161 ttgtttatgc acaggttgcg tttttactct tctgcgtctt cttttgccca ttctaatgag
    11221 cggcgaacgg cttttttcca acctttatag cgtttcgccc gtttttcttg gtcgccgtcc
    11281 ggtgtgaagg tgcgttcaat ttccgctttg tctttcagtt cttccaaatc tttccagaag
    11341 ccgacagcaa tacccgcaag ataagctgcc cctaaagcag tgacttcttt cactttcgga
    11401 cgctcaactt tggtgtctaa aatatcggct tggaactgca ttaagaagtt gtttgcggtt
    11461 gcaccaccgt ccacacgtaa cgcttgtagt ttcgctttgg agtcagactg cattgcttct
    11521 aacacatctc gggtttggta agcgatagac tctagggtcg cacgcacaat gtggttacgg
    11581 tttgccccac gggttaaacc gaaaattgag cctcgtgcat acggatccca atatggagca
    11641 cctaagccgg taaaggcagg tacaacataa acaccgttag agtcatcttc tttagtggca
    11701 aaatattcgc tgtcaaagct atcgtgaaca attttcagct catcacgcag ccattgaata
    11761 gacgcaccgg caataaatac tgaaccttcc aacgcatatt ccggctcgcc ttttgcgtta
    11821 cacgcaatgg tcgttaataa accgttttca gattgaatcg cagtgttacc ggtgtgcatc
    11881 aacataaaac agcctgtacc ataggtattc ttcgcttgtc cttctttcac gcataaatga
    11941 ccgtagagag cggcttgttg gtcacctgca atacccgcga ccggaatacg cacaccgcct
    12001 tgaccgccga tattagtttg cccgtaaact tctgatgaat ttttcacttc aggtaacatt
    12061 gagcgtggaa tattgagcaa ttccagcatt ttatcgtccc attgtttggt gtgaatgtta
    12121 aacaacatag tacgagaagc gttggtgtaa tcggtaacgt gtacccgccc ttgggttaat
    12181 ttccacacca gccaagtatc gaccgtaccg aacagcaatt cgccacgttc tgctttttct
    12241 cttgcccctt ctacgttatc taaaatccac ttcactttag tgccggagaa gtacggatcg
    12301 actaccaagc ctgtcgtttt acgaatatat tcctcgtgtc cgtctgcttt taatttatcg
    12361 gtaatatccg atgtgcgacg acattgccac acaatcgcat tataaacagg tttaccggtc
    12421 tctttttccc acacaatcgt ggtttcacgt tggtttgtga tcccgattgc ggcaatgcta
    12481 tccggcttaa taccggcttt tgccaccact tcatttaagg tggaactttg gcttgaccaa
    12541 atttccatcg ggttatgttc tacccagcct gcttgcggat aaatctgggt aaattcacgc
    12601 tgagccactt caaccacatt ggcattttta tctaataaaa ccgcacgaga gctggttgta
    12661 ccttggtcga gagcgatgat atattgtttt tccatagatt actcctgagt atttgctgga
    12721 agattgttat gaatgaggtt tttataaccc caagcaccga ataatgcacc gcagattggg
    12781 gcgacaatcg gaatgatgaa atacggaatt tcttttccgc ctgttaaagc aatttcaccc
    12841 caaccggcaa gataagcaaa gagtttcgga ccaaaatcac gagccgggtt catcgcaaag
    12901 ccggttaacg ggccggttgc tccaccaatt accgcaatca ataaaccgat gagtaatgcg
    12961 gctaaggctt tattcggcaa gccgttttta tcatcgccaa tcgctaaaat agtggacatc
    13021 aacaccacag taatcacaaa ttcaacgatg aaggcggtaa ccaatgtaat attagggttt
    13081 ggataggtgg agaacacacc ggcaaagcca acagtttcgc cccgagtaat gccttgagcg
    13141 gcttcggcgg cagtaaagag atcgctatac ataaaataaa tcagtgcgac agagcaaaac
    13201 gctccggcaa cttgggcgat gacatagggc aaaattttat gcttttcaaa gccgtagaat
    13261 gcggcaagtg ctatagtgac cgcagggtta aggtgagcac cggaaatacc ggcagaaatg
    13321 tagattgcca tggaaacacc aagcccccaa acgatggaaa tttcccataa accgaaattc
    13381 gcaccggcta cctgagcagc agcaacacaa ccagcaccaa agaaaagaat aaaacctgta
    13441 ccgataaatt cgccaataca ggcattacgt aaggatttgc tcataaagtt tctccttaag
    13501 atgaaaatga ttggaaagtg atgaaaaaat gtttgaatat gaacatattt cggagtgata
    13561 ttgccaaagc ggcatttttt aagcaaatag gaagtttcaa atttgtgaaa tccatcacat
    13621 tatttttcta aatcactcat ttttaggtat gatgtgagaa aacgttagat gaggaaaaat
    13681 gatgtcttca atacttatga tttcaatcgg ggcggtactt ggagctatgt gccgctggca
    13741 attagccgtt tggctaaacc cgatactcag ccaattcgcc tttggtactt tagcagcaaa
    13801 ttggcttggt tgtttgttaa ttggtattgc aatggggttt aatttaggcg agagccagcg
    13861 gttgctgttc atcagcggtt ttttaggcag ttttaccacc ttttccagtt tctctttaga
    13921 actaacggaa aaactattag cagaaaaatg ggggcagttt gtgacagtgc tgagtttaca
    13981 tttaatcggt gggcttttgc ttactttgat aggtgtaatg cttgcaagag ccgttacaag
    14041 cggtcgtttt tgctgaaaat tttgcaaata aaaaacctcc caaacgggag gttttgcgag
    14101 cgattaaagt aggatattgg aaagtaataa accaaatccg atactgaaaa tcatactaag
    14161 taagcccggt aacataaagc tatggttgaa aatatattta ccgatacggg ttgtgccggt
    14221 ggtgtcgaag tcaatcgagg caataatcgg gccgtagttc ggaatgaaga agtagccgtt
    14281 taccgccaca aataccccga ttagcaccgg tgcaggaatg ccgatagcaa tcgctacagg
    14341 gaataaggtt gcaaccgttg ccccttggct gtttaccaat acggaaagta cgaataatgc
    14401 gaaagcaaat gcccaaggtg cggtttcaac taagcctgaa accattgatt tcacttcgtc
    14461 catatgacct tgcattaagg tatcgcctaa ccaagcaata ccgaaaatcg caatcactgc
    14521 acgcataccg gcgtggaaga cagaaccttt ggtgatttca ttaccgtccg gtttgcagaa
    14581 gaagataatc aacgcaccaa tacttaacat cacaatttca atcgtgtgag ccatccccat
    14641 cggcttacca tcaaacacag ggcgaagagc tggaattgcg cccattaata ccactaataa
    14701 tgcaccgaat aggaataagc ctactgataa tttcgcagtc ggttttaacg gtaattcggt
    14761 tggattggta gtaatgtgat tttctttcac atattcaggg tcttgcaata agcgttgata
    14821 atttgggtcg tcttttaatt ctttgcccat tttatttaca aacacacaag ctaaacctaa
    14881 gcccaataag gtcgcaggaa tagtcacact taacacgtta cccaatgtaa caccttgagg
    14941 ttcaaggaag gcaaccacag caactactgc cgcagcaatc gggctggcga caatcgcaaa
    15001 ttgtgaggcg attactgcca ttgaaagtgg acgctcaggg cggataccgt tgtggcggct
    15061 tacctctgca attacaggta atacagaata agcaacgtga cctgtaccgg caagcacggt
    15121 gaatgtccaa gttacaagcg gtgcgataaa ggtaatgtat ttcgggtttt tacgcaaaat
    15181 gcgagtggca attttgatca tatagtccaa accaccggct gcttgcatgg ctgctgcagc
    15241 cgacacaacc gccataatca taaacattac atcaatcggt aaaccggcag gttttagccc
    15301 aaacccaaat gaaagaatgg ctaagcccaa gccaccgaac acccctaatc cgataccgcc
    15361 tacacgggcg ccaaccaaaa tgcatagtaa cactatggca aattggataa taaacatcgc
    15421 agacataatt ttttgctcct aaataagtaa atgaaactct gtgtttgaaa aaatctgcat
    15481 ttttcatcaa attaatcggc acgtactata tcaataaata aaactaatct ctataatcta
    15541 aatcaataaa atttctaatt aattaaggaa taatatgcaa ttttcaaaaa tgcacggctt
    15601 aggcaatgat tttatggtgg ttgatggtgt aacccaaaac gtttacctta ccgaagagat
    15661 gatccgtacg ctttctgatc gccatcgtgg tatcggtttc gaccaacttt tattggttga
    15721 accgccttac gaccctgaat tagattttca ctatcgcatt tttaatgcag acggcagtga
    15781 agtgtcgcaa tgtggcaatg gggcgagatg ttttgcccgt tttgttacgc tcaaaggctt
    15841 aaccaacaaa aaagacattc acgttagcac cgcaaaaggc aaaatggtgc taagtttgca
    15901 agaagacggc aaagtgcgtg tgaatatggg cgaaccgatt tgggaacctt cgcaagtgcc
    15961 ttttacagca aataaatttg agaaaaacta tattttacgc accgagctac aaaccgtgtt
    16021 atgtggcgtg gtttcaatgg ggaatccgca ctgcgtactg caagttgatg atgtgaaaac
    16081 cgccccggta aatgaactcg ggccgttact agaaagccac gagcgttttc ctgaacgggc
    16141 gaatatcagc tttatgcaag tagtgaatcg caatcacgtt aaattacggg tgtatgagcg
    16201 tggagcaggc gaaacccaag cctgtggtag cggtgcgtgc ggcacagtgg cggtcggcat
    16261 tatgcaaggc ttgttagata acaaagtgca ggtggattta cccggtggaa cgctgattat
    16321 tgaatggcaa ggagtagggc atcctctgta tatgaccggc gatgccaccc acatttatga
    16381 tggatttatt aaactgtaag ttttcccata gggaggcaag cggtttattt ttaccgtttt
    16441 tttgcaaaat agggttggtt tatacaaaag taccagcgtg gacgctggca ctatcagact
    16501 gatgtataac ttttgtttaa attcaactta tagatggtgc aagcgtcctc gcttgtacca
    16561 aaacaggttt cactcgagta acttcttcac caactccaac accacaggta attcggtaac
    16621 accttctcta tccaaaaaat gcccgccttg atttaaccga atataatccg cgtgcaaatg
    16681 ttgggctaac gcatcactgt attggtgatt cacgacctta tcatctaacg cacttaccac
    16741 atagcttgga aagctcgata cgctcggcaa aatcgcataa tagttggtaa aggcagacag
    16801 ttcgggtaag ttttctaccg gttgatagaa ccccgacaca aacaccgccc ctttaatctt
    16861 ggcgtaattt ttggctaaaa aattcaaaat ggcaatgcaa cctaaactat gcccgacaaa
    16921 aaccgtttga tcggtcagct ccacattttg tgcaagatga tttaaccaac catctaatga
    16981 cggctttgcc gaatccggca tattcaaccg ctcacaactg acaccacact tcgctaattc
    17041 ttgctccagc caaggaaacc aatgcttatc ggcattcgcc gtataaccgt gtacgatata
    17101 aacctgtgcc atttcacacc tcctgattca ccaaagattg taccatagct taatcaggaa
    17161 aaaacaagcg gtgatttttt taaatttttt tgcaactcag gtaaaatagc acgcatttac
    17221 gcaaagaggt catcaatgaa cgtttggatt ttacttgcga tttccatctg cctcgaaatc
    17281 gctgccacca atttactcaa attaagcaac ggcttcacca aagctatacc gactattggc
    17341 tcgctcgcct tatacggttt atccttttac tttctctcta ttattttccg caccctaccg
    17401 gtcggaatcg tgtatgctat ttggtccggc gtagggattg tccttaccgc ccttgttgct
    17461 tattttgctt tcggacagaa aattgacttg gcaggcttaa tcggcatcag cctcattatt
    17521 gccggtgtat tggtgattaa tttgttttct aaagtgtgat acaagcggtt gattttacaa
    17581 aaaaatctgc aaaatcaacc gcttgtaata gttggcaaga attataaccc ctttaaccgc
    17641 cggtaaagct cagtaaattt ttggcgtttt tgttgatatt ctgcatagcg ggcaggggtt
    17701 ggttggtaaa cctgttccag gggtaacggc tgacagaacg tagcaatatc ctgatttggg
    17761 tttagcgcaa tttgagcgag ttttgccgcc cctaatgccg gaccgacatc accactggtg
    17821 cggtattcaa aggttttacc gctaatatcg gcaagtagtt gtcgccagta cacacttttt
    17881 gctccaccgc caattaatgc aatattgtca gcaactacac cagtttcgtg gagtacctca
    17941 atcccttcag ccaaagcgaa acttacccct tcaatcacgg cttttgccat cgttatttgg
    18001 ttgtcattat ggcttaatcc ccaaaatacg cctttcgcat aagggtcatt atgcggtgta
    18061 cgttcacccg ataaataagg taagaaaata gcatcagatg ccgtttggct tgcttcaacc
    18121 tgttggaata aagtcgatac atcttttagt cccaatgatt ttactgccca atctaccgca
    18181 gaagcggcac ttaatattac tgacatcaga tgccaacgat caggtaaagc gtggcaaaaa
    18241 ctatgcactg ctttttgcgg attagcctga aatttatcgc tcactacaaa ataaacccct
    18301 gaagtcccca atgagagcat agcttgcccg gtttggtata agccaatgcc gattgcaccg
    18361 gcagcattat cgccaccgcc tgccacaatc ggcacagatt tcattttcca ttgctcggca
    18421 agggttggac gtaaataacc tgtgatttga ttgccttcaa acagtttcgg catattttca
    18481 atgtctaatc cgcaagcatt tagtagcgat ttgttccaat tccgtttacc cacatcaagc
    18541 cacattgtgc cggaggcatc agacatatca gaggcatatt cgccgctcat caacaagcgg
    18601 agataatctt tcggtagcaa gactttgctg actttttcgg caatatcggg ctggtgttta
    18661 tcaacccaac gcaatttcgg agcggtaaag cccggcatca tcaggttgcc tgtaatttca
    18721 cggctatttg gcacaagctg ttctaactct tcgcattcca taaaactacg tccgtcattc
    18781 cataaaatcg caggggaaag tacattatct gcgttatcta gtaaagtcgc tccgtgcatt
    18841 tgcccggtta aaccaatcgc ttttactgct tgtaaatctt gagtagcgga aagttctaac
    18901 atcgcttcat tggtggcatt ccaccaatct tgcggatttt gttcagacca caatgggtgt
    18961 ggacgaaaaa taggaagtga tttttgtgtg atggcaataa tgtgttgatt ttcatcgagt
    19021 aacacgactt tcacacccga tgtgccgaga tcgattccaa tgtacataaa tattcctttg
    19081 ttattgaata caagcggtca ttttattcgg aacatttgca attttaagtt ttggagatct
    19141 atcacccctc tttagcaaag agggggatca gatcgagctt aactttgcaa aaaattgata
    19201 aaaaacaacc gcttgtagat taacggtaaa tatagctatt taccaaattt tccaaatatt
    19261 cttgctgacc ggaaacaggt tttggatcta acccttgggt ttccactatt tttgccaaat
    19321 cttcaaggct tgctttaccg tttagaattt gtaagcccaa atcttggttc cagccagcgt
    19381 agcggttatc tactactttc tgtaatgctt gatcttccag catttttgcc gcacgtttta
    19441 gcgaaagggc taacacatca attgccccga tatgtgcgtg gaataaatca tacggatcgg
    19501 tactttggcg gcggattttc gcatcaaagt tgaaaccgcc cgttgtgaaa ccacctgctt
    19561 ttaagatttc atacatcaca agggtgtttt cttccacgct gtttgggaat tggtcggtat
    19621 cccaacctaa ttgcggatca cctcggttgg catcaatcga gccaaaaata tctaatgcgg
    19681 tggcagtcgc aatttcgtgt tggaaagtat gccctgcaag agtggcgtgg tttgcttcaa
    19741 tgttgacttt gatctctttt tctagaccaa actgttttaa gaaaccgtaa acggtggcaa
    19801 catcgtagtc atattgatgt ttggttggtt cttgtggttt tggctcaatt aataaagtgc
    19861 cgttaaaacc gattttgtgt ttatgttcca ccactaactg cataaagcga ccgatttgtt
    19921 cacgctcacg ttttaagtca gtgttgagta gggtttcata accttcacgt ccgccccata
    19981 atacataatt ttcgccgcct aagcgtttgg ttgcgttcat tgcggtaaag acttgtgctg
    20041 ccgcccaagc aaagacttcc ggattcggat tggttgaagc acccgacata tagcgaggat
    20101 tggtaaagca gttcgccgta ccccataata atttcacgcc tgtttcagct tgtttttgct
    20161 ctaaaatatc cacaatagtg ttgaaattgt gctgatattc tttgaaattg ttgccttccg
    20221 gtgcaacatc cacatcgtgg aagcagtagt aaggaatgcc taatttttgg aaaaattcaa
    20281 aggcaatttc cgctttttgc ttcgcacctt gcagtaaatc ccccgttttt tgccagcttc
    20341 tgtcaagcga acccacgcca aacatatcgt tacccgtcca gcagaaggtg tgccaatagc
    20401 aaaccgctaa ccgcagatgt tctgccatcg ttttgcctaa aaccacttca tccgggttgt
    20461 aatgtttgaa tgcaaacggg ttggtggaat tagccccttc atattgtact tttgagattt
    20521 tgtcgaaata gttagacata ataatgctcc tatgaattgg aaaaataatc tttcggtaac
    20581 atcatcggaa aattatgcaa aaccttcaat tacgatattt cgtttttgga tttcgattat
    20641 tggttaatgt ggcgtagatc acaaaagtga aaaatcataa tgatattaat aaatatgata
    20701 attgaacttc atttgaaata agcccagact gcttacgggc gaaaaagatg ctcacatttt
    20761 cataaccaat gaggtgaact atgaaactta agtctaaatt attagccatt gctacggcga
    20821 ctttaatggt actcagcaat gcttctgttg ctaaagatct aaaaatcggt atgtcaattg
    20881 atgatttacg cttagagcgt tggcaaaaag accgagatat ttttgtgaat aaagcggaaa
    20941 gcttaggagc aaaagtcttc gttcaatcgg caaatggcga tgcaaccgca caaatctcac
    21001 aaattgagaa tatgttgaat aaagatattg atgtattggt gattattccg tttaacggcg
    21061 aagtgttatc caatgtgatt gccgaggcga agaaagaagg tgttaaggta cttgcttacg
    21121 accgcttaat caataatgcc gatgtggatt tttatgtttc atttgataat gaaaaagtag
    21181 gtgaattgca ggctaaaagc attattgggc aaaagccgga ggggaattat ttcctaatgg
    21241 gtggttcacc tgtagataat aacgcgaagc tgttccgtaa aggtcaaatg aaggtgctac
    21301 aaccgttaat tgacagtgga aaaattaaag tggtaggcga tcaatgggta gattcttggc
    21361 ttgctgaaaa agcattacag attatggaaa atgcactaac tgctaataaa aataatattg
    21421 atgcagttgt agcttcaaac gatgcaaccg caggcggtgc aattcaagcg ttaagtgccc
    21481 aagggttatc cagcaaggtt gcaatttccg gacaagatgc agatttagcc gcaattaaac
    21541 gtattattgc cggtacgcaa acgatgacag tgtataaacc aattaccaat ttagccgaca
    21601 aagctgccga aattgctgtt gcattaggta aagatgagaa agtagaaatg aatgctcaat
    21661 taaataacgg tatgaaagaa gtaccggcat atttattaga gccggttgtt gtaactaaag
    21721 aaaatattga tgacacagta attaaagacg gcttccatac caaagatgca gtatataaat
    21781 aaatcacttt aatttttcta gatggcgagg cttcctcgcc atttttgaaa ataaggggct
    21841 aactaagtat ggcgaaatta ttagaaatga agaacatcac taaaaaattc ggtgaggttg
    21901 tggcattaaa taatatttca atttcccttg aaaccggcga aatactttct ttatgtggtg
    21961 aaaatggttc aggcaaatca actctgatga aagtattatg tggaatttat cctgccggtg
    22021 attatgaagg ggaaatctat ttttccggcg aaaaattgat tgccagaaat atcaaagata
    22081 ctgaagaaaa aggcatttcg attattcacc aagaattgac cttagtaaaa aatatgtcga
    22141 ttttggagaa tatgttttta gggaatgaaa ttaccaaatc agggattaca gatgacaatg
    22201 aaatgtatct gcgttgtaaa accttacttg aacaagtgca gttggatatt gacccaaaca
    22261 ccaaagttgg agagctaggt ttagggcaac aacagttggt tgaaattgcc aaagcattga
    22321 ataaacaggt acggttgttg attttagacg agcctaccgc ctcgttaacc gaaaaagaaa
    22381 ccgagattct gctgagttta attaaagatt tacaagctca caatattgct tgtgtttata
    22441 tttcacacaa attgaatgaa gtgaaagcca tttccgacaa aatctgtgtc attcgagacg
    22501 gcgaacatat cggtactcgc agtgcagagg gaatgagtga agacgatatt attacgatga
    22561 tggttggacg tgagattacc tcgctctacc cacacgagcc acacaatatt ggtgaagaag
    22621 tccttcgagt tgaaaattta accgcttggc acccaaccaa tacacatatc aaacgggttg
    22681 ataatgctaa ttttgtacta cgccaaggtg aaattttagg tattgctggt ttggtcggtt
    22741 cagggcgaac cgagatggca caatgtattt ttggctctta ccaaggcaaa tatcaaggtg
    22801 atatttttct gcataagcaa ccgattaaaa tcaaaaattg tgcacaagcg attgaaaacc
    22861 atattgtgat ggtgccggaa gatcgcaaaa aacacggcat cattccaatt atgggggtgg
    22921 gtaaaaacat aactctctct tcattaccgc aattttgttt tggcaaaaaa gtaataaatg
    22981 aaccgctgga agaaaccatt atcaaccaat ctattgcaaa actgaaagtg aaaacttcct
    23041 cgcctgaatt agcaattgga cggttaagtg gcggtaatca gcaaaaagca attttggcaa
    23101 aatgcctatt gcttaaccct aaaatcctga ttttagatga gccgacccgt ggtatcgacg
    23161 tgggagcaaa atatgaaatt tataagctca tcaaccaatt agctaaagaa ggtatggcaa
    23221 ttatcgtcat ttcctccgaa ttacctgaag ttttaggcat tagtgatcgt gtattggtta
    23281 tgcaccaagg caaaattaaa gcagatttga ttaaccaaga ccttacccaa gaaaaagtaa
    23341 tggaagcggc actcaaggag taacctatga ataagttaaa atcgattaat ttacaagttt
    23401 atattatgct gattgcaatt gttgtgatta tgagcttttt ctctattgca actgacggtg
    23461 cttatttaag tgccagaaat atctccaacc tgttacgcca aacctccatt accggtattc
    23521 ttgccatcgg tatggtattt gtgattattt ccgcagaaat tgatttatcg gttggctcgc
    23581 taatgggctt actcggtgga tttgccgcca tcagtaatgt atggtggggc tggccgctct
    23641 cgttaactat tatagttact ttaattttag gcgtcatgct gggtgcttgg agcggttggt
    23701 gggttgctta tcaaaaagtg ccgtccttta ttgtaactct tgccggtatg ctggcgtttc
    23761 gtggtgtatt ggtcggctta accaacggga caaccgtttc accgattagc aatgaaatga
    23821 caaccattgg tcaaggctat ttgcctgata tggtgggtat gattttaggt actatcggga
    23881 tattttgctt tattgtttgg ggtagctacc aacgcaaagc cagacaaaaa ctcaatctta
    23941 ctgtgccttc tatgtcgaaa gacacgctga aatacggact agttgcaatt atcgtattag
    24001 gtgcgatcta cctactcaat gattaccgtg gtgtgccatt cccggtattg gtgttggtga
    24061 ttctagccat tgccggcaca ttcttggcca gaaaaaccgc cttcgggcgt cacatttatg
    24121 cgattggtgg caacattgat gccgctcgcc tctcggggat ttcagttgaa aaagtcaaac
    24181 ttgcgatttt tgccttaaac ggcttattag ttgccattgc aggcttgatt ttaagctcac
    24241 gtcttggagc cggcgcacct tccgccgggc aaaatgccga attagatgcg attgccgcct
    24301 gcgtgattgg tggagccagt ttagccggcg gtatcggtag catttatggc gtagttattg
    24361 gagcatttat tattgctttg ctggataacg gtatgagtat gcttgatgtg ccaaccttct
    24421 ggcaatatat cgttaaaggt ggaattctac tgcttgcagt ttgggtagat accatcagca
    24481 agaaaaaagc ctaattggat aacaagcggt caatctcgac tatccaacgg gaaatccggc
    24541 ataatcgggc taaaaatggg aactattgtg cgttttgccg tctttttagc atttgctacg
    24601 gcaaccagct ccaccaagtg cggtggcatt tcgccttgtt tggcaaggtt gcaaaggtag
    24661 gttatcgctt taatccggct cattgagcct tccagttcca acacatacgc caccagtgcc
    24721 attcgtgcat cagcaatttc tcgctgtttg gtggtcaggt ttcccacatc cacctccgca
    24781 cgcactgccg gtaacttttt cggcttggct tccaccaccg ccgacataaa gcgggagcgg
    24841 atttcggttt ggatttcttg agggaggttt gagagtgcaa attctaaaat ttctccccca
    24901 actccaacct ttttatgagt agtccatcct tgtttctttg cctgatacaa aactccttgc
    24961 tttgttttag gtaaacaggc taaacttaac tcagccaatt cttttgccga atagtgtgtt
    25021 tttagactgt tttcactcat aaaaacctct ttaagctatc tgtcggcaaa ttttttatgg
    25081 tttcgttgag cataacgttc aggccaaatt tcttcgggtg atataccgat tgcttcggca
    25141 ataatacgct caccctttaa ccacggacga tctacagcgt ttttcaaggt gctggattga
    25201 ctgtagccat gcttcaatga gagttgtcta agcgaccaac ccgctttatg taaagcagcg
    25261 atgatgtcgg ccctatgcca gtctttcgct gtttttttaa tatcttccaa tgtactcatt
    25321 agataactcc tttcgcttaa cgatttagat aatataccta tttttactaa aaataaagtg
    25381 taaaaaggtt gctttatagt tgatttatga gcaaataaac ttagtttgct gtaagttatt
    25441 gatttattta taggttttta gagtgtaaaa ggctaaaaat ctcaacttat ttttttacag
    25501 ttatgaaaat agagtgtaaa aaggttattg gtttcggtaa ccgaatagaa cagagcagaa
    25561 aaaatgcaaa attaagtaga tctgaggttt gtgatgccct aggaggtatt gcaatatcta
    25621 cattacaagc gtgggaggct gatacaagag aacctcctat atcaaaactt atggctttgt
    25681 cacaaatact taacgttgag ccttgctacc tattaacagg tgagcgacac tcgcaaagcc
    25741 ttaatgtcac aagagagcca cagcctgtgt atgccacaaa accgcagaca gaagaagggg
    25801 aagtagttgt tatcaaagct aagttacaag aggcaataga aacgttggaa gaggtgctgg
    25861 aaattaccca acgggaaatg aagcctgccg gaaaagccca aatggtgtgg gctttctacg
    25921 agcttctcac gcaagaaaaa agcgaaaaag aaaaaatggt gggattactc aaactggtgg
    25981 cataacaggg gacaatatgg acaaacaagc cattctcaaa ttattcagag acaatagcac
    26041 tgccggcaac agccagccaa gccaagagcc tatacaggtg tttaataaca gcaacgtcat
    26101 cattcaaaac ggcgataacg ccacggtgat tgccggctgc acggtggata ataacaccaa
    26161 cctaacctgt gccgataaac aacgtgtaca cgacctcatt cacagcttag agcaacgcaa
    26221 ccgagccagc cgagatgagg gcgcttaaaa ttgttttaaa atccgtttaa acctgctcag
    26281 acctatgcaa aaaataacgt aaaaatagcc catttttttc tatttttgct cattttcgtt
    26341 ttttgcataa ctcaccccaa acaaaaacgg cgaagccttg tatttcctag cctcgccgtt
    26401 atttttccgc ccaaattttt ttctttctct ctatgcaaaa aagatcagta ccccacacta
    26461 tgttgccaga catactcaac aattttaccg tcaacgtcag attaccaaaa atgaccgctt
    26521 gtaatttaga ggagtgttta gagcggaaat aacatcggaa tcacaaacac cgacaccagc
    26581 atcaccagta cagtaaacgg cacaccaact ttaacgaaat caataaattt atagcctgcc
    26641 ggtgctaata ccatcgtatt taccggtgaa gaaaccggcg tcataaaagc ggcggaggct
    26701 gaaacagcga ccgtcatcac aaaaggtgcc ggtgagtagc caagttggtt agcaatcgca
    26761 atggctatcg gcataaccaa aattgcagtc gctgtgttgg aaataaaagc actgataatc
    26821 gctgttacta caaataatac tattagaaca aaatgtacat ctaagccttg cattgcatca
    26881 agtagaagcc taacggttaa atccacacca ccggtttttt gtaaggcaat agaaaacggc
    26941 atcatcccca caatcaacac aatgcttggc atatgaatcg aatcataagc acttttcata
    27001 tccacacagc ggaacttgcc taacattaag caggcaatca acgctgccat cacgtttggc
    27061 acaatgccgg taatcatcag caacaccata gtcagcactg agaacagagc gtgaggggct
    27121 tggcttaacg ccggaggggc gtttttactt tctgccggat ctctaagcaa gaagaaatct
    27181 cgatgatcgt cgtccatacg gtgaatttgt tgccatacgc ccatcaccaa taaaatatcg
    27241 ccgaatttga gtggcgtatc gagcagttcc tcttgtatga tttcatcacc acgttttaag
    27301 ccgacaatgc ttaaatggta tcttgagcgg aatttgagtt cccgaatagt tttaccgata
    27361 cattctgctt caggcataac cgaaatttcc gccataccca ccgagcgata ttgtgaggaa
    27421 aagtattcgc cttttagctc aatcgggcga agtttgagct gttcacagcg ttgttggtaa
    27481 gtttcatcat cgagggcagt atcaagcagt aaaatatctt tcggctggaa aatttcgttt
    27541 accgaggcac tgacggtaat ttttctaaac cgcttagtgc gttgaattgc aatgatgttt
    27601 agcccttgct caatccgtaa attcagttgc ccgatagatt tgccgacaca gtctgaatct
    27661 gcttccacca gcaccatttt ggctcgctct ttaagttgat actcttcaat taactgcgac
    27721 attgaaaatt tttgagcctg actgtgagta ttgctttgct caccattatc caaccaacgg
    27781 cgggcaatca gcatatagcc gatgcccatc actaaaataa ttaatccaat cggagtaaaa
    27841 ctgaagaaat tgaagccttc aaaacctgat tttactaatt cggaatgagc aacaaggttg
    27901 ggtggtgtgg caattaaggt catcataccg ctgataagtc cggcaacact taacggcatc
    27961 attaaccggc gaggagaaat tcccattccc gagcaaatgg caagcaccac cggaatgaaa
    28021 atcgccacaa tgccggtgga actcataaaa gatccaagcc cggcaataca gagcattagc
    28081 agcaccagca ctttggtttc gctcgctccc gacacccgca tcaaccaatc gctgacttgg
    28141 ttcgccacgc cggttcgcac caaaccttct ccgacaataa agagcaacgc aatcagcacc
    28201 acgtttgggt cacttaagcc tgccaacact tctttgactg ataaaatatt agtcaggcta
    28261 aaaaacagca ttacaattaa ggcaaccacg tccatacgca acttgttttg gataaattgc
    28321 caaatcgcaa ataccaataa cgccattacc caaaacagtt cttgcttaag aaaatccggc
    28381 acaaaagaga gcaacgattg cataaccata tcctccaaaa tagttaggga tagattacac
    28441 cgctttaagc aaagaaaaaa gccgataaga tcaaaaagaa aggaaaaagc aatcacgtac
    28501 ggcgtgaatg ctcagtacaa gcggttagtt ttgacgaaat ttttacaatg ggctttccac
    28561 attcagttgt tcgtcaattt cagttaccgc caaaatcagg cttgaacgta ccattttttc
    28621 caaccgcatt tgctgcattt gaaagagcat cgaatcttta ttcgctgcac tcgctttcat
    28681 attcagcaat tcattgatag gcaaaaaatc aatatggtgc aaatctttgg caaatttcac
    28741 taccgccggg tgagaaaatg cgaactcgtc ttcttcctca ttcaaatgct gtttgacttc
    28801 aaggaaaagc gagatatctt caaacacttt aggtgagatc acccccaacc caagcaacac
    28861 ttttaaacgt acttcaatgt cagccagcgg tccttgatgt tcaaacaagg aatccaccac
    28921 ggattttaac gcaaagtccg ttttgcgaaa cactcgttca atcaactgtt caaccgcttt
    28981 ggcaaagcgt tgattggcaa tgctaaggaa accacgcagg gtggtttcct cactgagttt
    29041 gtcgatgtaa tccatcatag tgtcaagaat tattgatata attccaccac ttgagcaatg
    29101 accgcttggt cggttaaacc ggtgtatttt tccaccgctg ccgccacacc gtgatttgca
    29161 ataaattcgg caagttcgac cgcttgtggg tcttcctcat tgcgatattg caatgccatc
    29221 accacgcctt tgaccaagtt ttgatacggt aagccatatt ccaacgtgcc acgcaacggt
    29281 ttgatcaagc ggtcgttttc gctcagtttg cggattggct cacgccctac acggtttacg
    29341 tcatcgttta agtacgggtt ggcaaaacgt ttgaggattt tttcgatata cgctgaatgg
    29401 gcttgtgggt cgaagccgta acgtttaatc agcacagcac cgctctcttc cattgtggct
    29461 ttcacctgag ttttgatttc ctcaatcgca atcgcctctt taatccattt cacgcccgct
    29521 tgtttgccca agtaggcaca gattaaatgc ccggtgttca gggtgaacag tttgcgttcc
    29581 acaaacgcca tcaggttatc ggttaattcc attcctttga tgtttggaat gtcacctttg
    29641 aactgggttt gatccacaat ccactcgctg aactcttcca ccgtgacttc caacggatca
    29701 gcagggttcg gctcggcagg tggtacaatt ctgtccaccg cactatcaac aaaaccaacc
    29761 actttttcaa tttctgcttg ctgctcggca gttaaatgct caaaaatttt acctttaaag
    29821 aaagttgtgc cacgcaccat attttcacag gcgataatgt tcagcggttg ggtgttgcca
    29881 ctttccacac gagccactaa cgctttggcg aacagtgggg caataaagcc aagcacattc
    29941 gggccgactg cggtggtaat taaatcggtg tttttcactt gctcaatcac ggcattttcg
    30001 tctttcgagt taattgccgc aatgtttttg acaatttcca cacggctgtc atcgcccacg
    30061 attttcacgc cgtattgctt gttttggttg atttggtcga tttgagtttg gttaatatcg
    30121 gcaaaagtca cgaaaatgcg agcatcagca agcaatttgc cgataaagcc acgcccgata
    30181 ttaccggcac caaaatggag tgcgttcatt gatgattgtt cctctataaa acgtaggggc
    30241 gggtcctgtg cccgccctaa attttgtagg ataatgggcg ggcacaggac ccgcccctac
    30301 acaacagggt gattatttag ataataatgc taacactttt tccacgtcat ttgttgaggt
    30361 cagtgttttc attgcttgtt catcgtccag tgcgttggta attgcactta aaatttggat
    30421 atggtcgttg ccttttgctg caataccgac caccagtttc gccacgccgt cttcttcatc
    30481 ggtgaagcga acgccgttcg ggtattggca gaccacgata ccggttttca gtacgctgtc
    30541 tttggcatca gatgtaccgt gtggcacagc taagccttcg cctaagtaag ttgaaaccat
    30601 ttgctcacgg gcgaacattg catctacata gcttggttga acaaagcccg ctttaactaa
    30661 ctgctcaccg gcaaagcgga tcgcttcttc tttactgtta gcttgtaagc ctaaaaagac
    30721 ttgggctgct tgcaatttta acccttcggc ttgaggttct tccaccgggt ttgcaaaatt
    30781 ttgtgtattt tgcaccgctt gttgtggctg gtggttagcc agttttgcca ctaagctgtc
    30841 atagaacgca ctgtctaaga agttagtgag cgataagtgt tgagccgttg ccacacgttg
    30901 tgttgcacga gcggttaagt ctttgtgggt aatcaccagt tgtgcgtctt gcggtaagtc
    30961 gttgatcgct aagttttgta cttcaatgtt taaacctgcc gcttgcactt ttttgcgtaa
    31021 catactcgca cccatcgcac ttgaacccat accggcatca cacgctacat agattttgtt
    31081 gatgttacca tttactacgc ctttgctttc tgctttcatc gcttgagttt gtgcttgtgc
    31141 atcttccaat gaggcttcac ctttttgggt tttgagtaag attgacgcaa tcgcaaaagt
    31201 cacggcacaa gaaagaatca cggaggcaac aactgcaaag tgagcacccg gtgcggtcat
    31261 tgctaaaatc gcaaaaatag aacccgggga agccggtgcg attaaaccgc cacctaataa
    31321 tgagttggtt aaaacgccgg ttgcaccgcc tgcaatcact gcaagaatta agcgtgggct
    31381 cattaacaca tacgggaaat aaatttcgtg aataccgcct aagaagtgaa tgattgacgc
    31441 actaccagcg gtttgttttg ctgtgccacg accaaagaac atataggcaa gcaagatacc
    31501 aaagcccgga cccgggttcg cttcaatcaa gaacagaata gatttgccca cttcttgtgc
    31561 ttgtgctgta cccaatggcg tgaacacacc gtgattgatc gcattgttta agaataggat
    31621 tttcgccggt tcaacgatga tagaggttac tggcagaaga ccagcttcaa ccaacgcccc
    31681 cacacctgca cctaatgccg cagagatttg ggtgacgata cctccaatga aagcaaatga
    31741 aagcattgcc aaaatcatac cgatgatccc gaccgagaag ttgtttacca acatctcaaa
    31801 accgcttttt actttgccgt caatcgcttt atcgaaggtt ttgatcgccc agccgcctaa
    31861 tggacctaca atcatcgcac ctaagaacat cgggatttca gaacccacga taatacccat
    31921 tgtagtaatc gcacctacaa ccgcaccacg ctcaccaccg actaatttac caccgctgta
    31981 accgattaac agtggcagca agtaagtaat catcggaccg accagtttag caaaagtctc
    32041 gttcggcaac caaccggttg gaataaacag ggcggtgata aagccccacg caataaaggc
    32101 accgatattc ggcatcacca tattcgataa gaaacgccca aaaccttgga ctttcacttt
    32161 taaattagac atagaaacct caaaaaagga gagaaaatta gggttgaaaa aatcgtgctt
    32221 aaattagcac cactttcaaa agttacaaaa atgtttctct cagaaatgtg aagtagatca
    32281 cattaaattt ttttgggcag atttgaaaat gtgatctatc tcacattttt ggagtaaaga
    32341 tggcgtaagc gtcctcgctt gtgccaagca taattctatt tttgcgatct acatcgaaaa
    32401 aataaaatga attgctaacc ctaactgttc acctatatta ctatcagcat aaactgcact
    32461 ttagaggttc ataatgagta gaaaatataa gttttatgag aagagcggag cctattttgt
    32521 tagttttgca acagtttatt ggattgatct atttattcga gaagattatt ttcaaaccat
    32581 tatccaatca ttgaattatt gtcgaaaaca aaaagggatg attttatatg gctactgcat
    32641 tatgccaagc catattcatt tattatttca agcaaaagac caaaacccgt cagatttaat
    32701 aagagatttt aaaacattta catctaaatg ttgattcagc aaattaaaac aaatccccaa
    32761 gaaagtagaa aagaatggtt attatggatg tttactcggg cagctaaaca acgaaataat
    32821 gtcaagcaat accaactttg gcaacatcat aaccaaccga taacaatcta ttctcagaaa
    32881 ttttttgatg aaaagctaaa ccatattcac aacaacccta tcgtaagcgg ttttgtatgc
    32941 gaggcatttg aatggaaata tagcagtgca agaaattatg ctaacaactt acctgtttta
    33001 ttagatattg atatatgtca gtgaacggca caagcgtaaa cgcttgcgcc atcgttacat
    33061 ctataaatta actagagaac tccatcaatc ccgttacttt accctcatca ttcactgcaa
    33121 ttaatgagtg aattttcagc tctttcatta aatcttcggc tttggctaaa aattcggtat
    33181 cgttaatggt ttttggatta cgggtcataa tttcgtcagc ggttttattt aggctctccg
    33241 ccccgaattt cgctaatgtg cggcggatat caccatcggt aataatgcct tccaatttat
    33301 cgtcttgcat aattaccgcc acccccatac gcccttcgtt catcacagat aaacattcgg
    33361 taaaggtggt gtctaagctg gcggttggca ctttacgcac catcacatct cgcactctgt
    33421 tcaataattt acgaccaaga ctgccacccg ggtggtagcg ggcaaaatct tcagggcgga
    33481 aatcacgggc tttcattagc gcaatggcta acgcatcgcc taaagccatc gttaccaaag
    33541 tagagctggt tggagctaga ttattcaggc aggcttcacg ctctacacca atatttaaaa
    33601 tcacatcggc atttcgccca agtgtggagt aaggattacc tgtcatcgca ataattttat
    33661 tgccgaaatt tttcaggctt ggaatcagtt tattcacatc atcagtttca ccactgttag
    33721 aaatcagaat taccatatca atcggtttca gcattcccaa atcgccgtga aaagcctctg
    33781 tcgggtgcaa gaaaaagctc ggtgtaccgg tggaggcaaa agttgccacc atttttttgc
    33841 caaccagccc cgattttcca ataccgccaa caaccactcg cccttgacaa gcgagtatca
    33901 tatttaccac ctcattaaat tcttcagaaa gtcgatggtt tagcgtgata atctgctgag
    33961 catagaggtt taacgtttct tttgcactgt ctaaatgatt catttttacg cccttataca
    34021 actaacagct caatcccttt cgctttaatc tgttctctca tttcttgaga taatccttca
    34081 tcggtaatga tagtatgaat tttttctaac ccacacacaa tattcggact tttacgtcca
    34141 aacttactgg agtcggcaag taagacgatt ttatttgccg catcacacat tagcgaactg
    34201 actttatata cttcattgaa agtcgttaat ccaacgtcta aatctagtcc gtctgtgcca
    34261 ataaagagta tgtcaaaatt tgaaccaata aaagcggatt cagcaaaata accgtgaaat
    34321 gaagctgatt tctcacgaaa tgtaccaccg gaaatcagta agttatagga tttattgagt
    34381 ttcaaaatct cattgaaaat agttaaacta tttgtcatta aagagaggtt atcaaatgct
    34441 tttaaatggg gaatcatttg taacactgtg ctgcctgcat caaaaataat agagtttccc
    34501 tcattaatta actctgcagc tttttgcccg atagcttgct tttgttgaag attaatgccg
    34561 gttttctgtg caagcggttt atcgtctttg tcctctttat tgattttctc ttcccgttca
    34621 agaatttctt catcaattaa gactacactg ccataagtac gcaagacttt cttatcttct
    34681 tcaagtgaag ttaaatcttt acgaatggtt gcaccagtta gcttaaaata gtctgccagc
    34741 acgtccactt cggttctacc gtgctgagct aaataggcta aaatttgctg tcttctttca
    34801 aaaggtttca ttgttcctcc aatttagcaa agattggagc gagctaatct gtgctaatgc
    34861 tgttttaatt tttcaatgac atctagtagc gatgccattc ttttatcggc aattgaaaat
    34921 ttttcatttt gataatcggt attcaccaaa aatgtagtta aattagcggc tttggcggca
    34981 attaagccgg ttacactgtc ctcaataaca atacactctt gtttttcaat gcctaatttt
    35041 ttcactgcac tcaaatagac cgcagggtgt ggcttgccat attcttcgtc cattgcactg
    35101 catcgaatcg ggaaataatc ccacagtttt aagcgatcaa acaccgcttt aatcaccacc
    35161 ggcggcgatg aggttgcaac ggctaacttg atctgattag attttaagaa atccaataat
    35221 tcatataaac ccgttaatgc tttgccgtgt tgttcaatcg cagcacaacc gtgtgccaaa
    35281 atggcttcac ttaatgcttg gttggaaaca gataactgaa attttttaat ccaagtgtcg
    35341 ctcaactcat caatccgctt acctctggtg agttgttcgc aatcttgctc ggtgatatta
    35401 atacctaagt cggctaatac tgcaatttga gcctctgccc attggggttc tgaatcaatc
    35461 attaccccgt ccatatcaaa gatgacacta ttgatctgca tatttattct ccattatctc
    35521 atttttaact aaaaaaatat tcaaaatgaa ataaaaaatc gcattatttt tgatctgagc
    35581 aactatatcc ggaagatatc gccactttta aggcaaattg tgaacgttta tcgcttggaa
    35641 agattttttc cggcacaatt tgatcaagag acaaaccaat cacagacgct aatttctgcg
    35701 gtctggcaaa gacggaaaat cctttcatac aaaggctatc taccactttt ttctcatcat
    35761 caaacgccaa cacaataacc gatttaggat taaaacgacc actattacgc ccaaccgtta
    35821 ctttgccttt cttactgatt tccataaagg cttggttaaa ggctttaatt tgaagccaac
    35881 ccaaaacggc ttgtaacagc cacattatca ttgccaatat aatcagaagt gtaattgaat
    35941 ccatcattgc tccttaataa aaagccacag agcctaaacg tacctgcgat ttcaaaacaa
    36001 tacgctttcc cctgtggcat attaaccggt gtggcgaatt aacaagcggt ttattttagt
    36061 cattttttgc aaattgttgt aaaaaaatcg acaaatttga ccgcttgttt gcttagaaca
    36121 ttacctgacc accggtaata ttaatagact gtcctgtgca ataagctgcc tcttcgccgg
    36181 catagaattt taagacattc aacacatctt gataatcaca gccacgtttt aaaggcactt
    36241 tatcaatata aacttgctct acttcgcttt ccggaatgcc gagttttgcc gcatattgcg
    36301 gaattaacga ttggaacatc ggcgatttca ataaattgcc taacattaat gaatgcacgg
    36361 taatgccttt atctgccaag tctaatgcta acgattgtgt taaaccaaca ccaccaaatt
    36421 tcgctgcact ataaccggaa ttatacttac tccctacttt acccgattta gaattaattt
    36481 gaatgatacg ccctttaata ccgtcacgaa tcattaagcg ggagaagtgt tttgcggtta
    36541 agaaataacc ggttaaattc acttttaccg acaaatcaaa atcgtttaag ttgaaatccc
    36601 aaataggcga tgctttcgct gtgcctgcac tgtaaaccaa tacatcggca cgcccgaata
    36661 cggtatctgt tgctttagct agtgcttcaa cgcttggttc atcagccgca tcgacttgca
    36721 ccccaatcgc atttccttcg ccttgtttgg cattaatgtc ggctgccact ttttgtgcat
    36781 tttcgccgtt taagtcagca accaccacac gataaccggc atctgccaag ccttcagata
    36841 aaaaagctcc aagtgtttga ccgccgccaa caacgatagc aacttttttt tcattgttca
    36901 taatgtattc ctctaaattt tcaatttgaa attattttta atccgtcatt aatcacgctt
    36961 gataatcaag gttgagttct ctgttaagcc ttgcggcggt gttccgataa cgtgaacgct
    37021 tcccggaaat tccgcatcat ttgccccgtc aaaacggaag gtaatgtgtc cgagggcgga
    37081 taagttttca gatgcaacgc taccaactgc cgtaatcgga taagctacgc catcaaattc
    37141 agcgatatcg cctacttcta aagggctact taattcagat ggattatgaa tgaagcagta
    37201 atcttgtaaa tctgccggtg cgccttgttt aaaagtgatt aacatatcgt ctgttaatga
    37261 ttcctgagca aaattcccga ttttggtaaa ggtcgtttga taaataatcg tcatataaat
    37321 gttctctcgt tttgacaagc ggtgcatttt gcaaaaaatt tttcaaattc caccgcttgt
    37381 atcgtggtta attattggta gatgaatgcg gaaactgccc acgcaatcag cacggtcggt
    37441 gcaccggtta aaaaacggct gactaatact gacggtacac ccacccgtac ggtatcttgt
    37501 tttgcttccg ccattgaaag acccacagga ataaaatcac aagcggcttg agcattaata
    37561 gcaaagagtg ccggcagtgc taaatgtggc ggaatattgc ctaaaccgat ttgcgtaccg
    37621 actaacacgc cgataacttg tgcaatcacg gctcccggcc ctaagaatgg ggaaaggaga
    37681 gggaaggaac aaatcaacgc cagtgtaact aaaccgattg ggctgtttgc cagaggggtc
    37741 aagccgtggg caatcacatc acctaaacct gacgcaatga tgatcccgat taacgcagaa
    37801 acaaatgcca taaacggtaa aatggtttta agcaccgtat caatagtgtc tcgtccggct
    37861 tggaagaata acgccgccac cgatcccatt cccataccga tttttgctaa taaaccatca
    37921 ctttgttcgg tgattttttt gctggagtca tactcttttg ccgttgctgt cgttgatgaa
    37981 gttggttttg cttgctctgt tgccacaggc acacttccat cggcatcaat taagcgaata
    38041 ttgttttctt tcaccgctga aacataaata tcttccacaa taaattctgc taaagggccg
    38101 gatttaccgg tggagtgaat gttaatggtt ggaatacggc gttttgggta aagcccacag
    38161 cgtaataccc caccgcaatc aataatcgca atcccgattt cttctgccgg cggttcgcct
    38221 tctttaaaac catcaaccgc ttcccagccg gttaattcca ccaatttatt aacaatcgca
    38281 gggcgagtgc cgccggtcat ataaagcact tttttgcctt ccacaacagg taatgttaat
    38341 ggaccacccc aaccaccgtt gcctttttca atgtaaatcg ctttgttgct cataatctat
    38401 tcctctgtat ttcagttact tggttagtgg gataaatgta cttctctatc taaggtgatc
    38461 cccattcgtt tttcaaagaa tgcggtggtg aagtctgtta tccagccacg gaagaaattg
    38521 gtaaacatac cgactaataa ataactgatg gctaaaggcc caagtggtaa gcctaaggtg
    38581 gttaaaccgc tggcaatacc taaataaacg aataattcac ccgggttgat gtgagggaat
    38641 aagccgttca tagagtggca actataagag gctgcggcgt agtagcttgg tttgtaacgc
    38701 tccggtaaga aacgccctaa gcttaatgtc atcgggttac agaaaacgaa agtgccgatc
    38761 accggtaaga tcaaataacg tgaaataggg tttccggcac tacgttgagc aagtcgttca
    38821 atccgatctt gccctacaaa tttaatcagg gcattcatta caaccaataa tgaaattaag
    38881 agtggcaaaa taccgtttat cataccgact aaggtttcac cgcctttttg gaacaggccg
    38941 ataaaccatt ctgctccgtg tgtaattgct tcaatcatac cgatctccgt ttttcaaaat
    39001 aaaatatttt tctttcatct ctgttatgag atgtgcaaat agtaaattat ttttatttta
    39061 aaaactgtga cagcgatcac aaaatgagaa acaactttca aaataaatta ttttttcatt
    39121 ttaaatcaaa acaaaagtga agtttgaata ttagatgggg gaaaaaagga aggctaaatt
    39181 aaaaaagctc aaacaataat gtttgagctt tggttttatt caatgacttt tgcagtatat
    39241 ttgaggtttc cgaccgcttg tatcagggct tggttatcca cactttcttt taccaccaca
    39301 gtcgcttttc gctctttcat tgaggctttg gtggaaatca caccttctac tgctcgtagt
    39361 tctttattga ctaaataaac gcagagctgg cagtacattt ccggaatatg gaggacgacg
    39421 gttttctctg cttgtttcgt ttcaatttga gctgtttttt cttgtgcgta gcttgaatga
    39481 accaaaccaa aagccaacag catcgttgcg atatattttt tcattttatt ctccgctcca
    39541 catttccaaa atgtaaggca atacataagg gtaagttaaa aagaacatca ccaccacaga
    39601 aactacccaa tacaaaatga ccagggttct gcgggagaag tatttggtgc agatgatttt
    39661 gttggaaaaa ttcagcaacc agaagccata gccaaacgca gcgagcgaaa tcagcaacat
    39721 cggcagttgt agaaactcca gttggtttag ctccatcaac caaggggaag agatgccaaa
    39781 cactaaataa accagtggcc caatacaaca gaatgtggag gtcaccgccg acactatggc
    39841 ggtcacgcac attgtgataa atttatggtt ataactcttt agagatgaat tcatagccaa
    39901 attctttcgc ctcaaacgag tttaacgggt caccacctac ctcagcataa gggtagccaa
    39961 agttattcag tggtgtaagt tccggttgtg gatataaatc gaaatcacgt ccgtgattga
    40021 agcctaccca gttcatttcc cagttgccga ataagtattt cgagaccgct tgaacatcag
    40081 catcatccac gtcttttttc tcggctaaac gcattttagc gacatcggca gaatctacag
    40141 gcacccagcc gaagcctgct aaatagaact ctgcacggca gtgctgcccg ccgctttcat
    40201 tcgccacgcc atcttttgag ctaccaaatg cggttttgga atattgcccc atttttaccg
    40261 cttgccctaa acgaatacca aacacttcac gagcaggaat gttagaggca cgagcaagtg
    40321 ctacaaacac cgagttgatg tcggtacatt taccttttag cactttggtg gtgagaattt
    40381 tctccacatc gccatcgcca cagcctagca ccgagttatc acgttccata ttatcaacaa
    40441 tccacttgtg gataagttcc gcttttttca acggattttg ctcgttaccc acaattttat
    40501 cggcatattc tttcacaata ccgtctgttt taatgtgagc cgttggtttt aaatactcca
    40561 atacatcaac agaataagtg attttctccg gcatttggta atttgccaac gccccttgag
    40621 ccataggctc acgatcttgg gtttggatca ccattttcac ttttagatca cgctttggtg
    40681 catcagtatc ccaagtggca aacaaggttt ttgcaccata agcgttattt tctgtgatat
    40741 aggcgttttt gtaacttccc tcaaactcta tcgattttac cgtttgataa tcggtatcag
    40801 acggcaacgg aatccacaaa ttagttgttc ctttcgagcc ttgtggcaca actaaatcat
    40861 aagattgcgt aaattcgtaa gtgtgggtag tggtgtggaa attgttctgt tgaacaggag
    40921 cagcaaaagc cgtcgcacag cttgaagcca ccaaagaggc aataagttta ttcattgaaa
    40981 tgatccttat tagagtgaaa aaacagttaa aacttaacat attaagtatt ctaactacgg
    41041 attgaggttg catattagcc aatcgagatg ggaaaagcaa tgggggagat gattttttag
    41101 atagtgcaag cgtccacgct tgtactagaa acaaagctaa aataatcaat aggcacaagc
    41161 gtggacgctt gcgccatcag agagaataac aagcggtcaa aaatcctcaa aattttacaa
    41221 atagattttt tgccctaatt ttgcactttc aaatacgctt tcgatcactt ttagcacaaa
    41281 aatgacgtct tcgagtttga taattggctc agcattgtga gcgatggctt ggtacaaatc
    41341 atcaaacaag ttttgataac tgacttcggc atttcgatag ggctggcgaa ccacattacc
    41401 ttccacttca gtgtgtaaaa ttccccagtt ctccttttct tcgatattcc aatctttgcc
    41461 aataggttgt acgccatttt tcagcaaatc ttcttgatta tcgggagttt gtttcagata
    41521 agagcctaat tttccgtgta atacaaatgt cgggcttggt tcacgagcat atcggctggc
    41581 tttcagcacc actttaaaac cgttagcata atagagctga atatcaaagt tatcatcaac
    41641 caatgcccct tcgtgctgat aacgcacatc agcatacacc gcctccggct tcccgaaaag
    41701 atacaaagct tggtcaatta aatgtacgcc taaatcatac actaaacctg taccaagctc
    41761 gcctgattct ttccatactt taacattttt ctctttcgca taacggtcaa aacgaatttc
    41821 gcaatctacc aactctccca gtaaattttg ctccattagc gattttgccg tcgcaatatg
    41881 gctgtcccaa cggcggtttt ggtacacata aagcaccttt ccttgccgct ttgcaagttc
    41941 cgccaactct tccgcctcag ccactgttgc cactaacggt ttttcaacta aaacgtgttt
    42001 gcctgcaagc aatgactctt ttaccattgc ataatgggtt tgattcggtg tggtaatcag
    42061 cactaaatcc acttctggcg ttaaaagagc gttgaaatcc cgcactgttt ctgcattcgg
    42121 caaccattct gccgcattgt tagaggttcg ttcatatacc tttacaatat taaaacgagc
    42181 atcttgtttc aaaaacggga tatgaaaaac tcggctggaa aagccggcac ctgcgatggc
    42241 aatattgatg ggttgcatag acaatcctca taaaattttg atgttatctg cttaaataaa
    42301 caagcggtca aattttagga aaattttgca aaaaacagat aaaatacgac cgcttgttta
    42361 actaatcata ggttttgcaa acaatatctt tttcttcaca aaacatttca ctgtggtttg
    42421 cacggcattg cttttgtaca tttaatttgg ctctgcctcg gctactatgt tcactacgat
    42481 attcctgagt aaatggcttt agagtacaaa tgtgaacctc tttggaatca agtggatctg
    42541 agacaccaat tataatcggc atagggatac cggcttgccc cgtaggagta accggcacga
    42601 cacagccact taatagtatg cttaaactta ttaaccaata acgcatattt ttctcctttt
    42661 aaaatgtata ataaatcaga acggagcatc tttatcgtta cagtaagctc ttaatatctt
    42721 gcctaatttc ttggtatttt tattaaaatt tcggcattta gggcatacca aaagatgcaa
    42781 ctgcaaacgc atatgttgtt gcaaacgaag tttctcatca caagactgtg aaataagttc
    42841 tgttgcttgc ctgcatttca ttttgattcc tctctaaacc aattgcgaga taaacactct
    42901 tgtaaacgta aacgagcacg atgaagtaat acatttaagt tagagagaga aatttcacat
    42961 tcttggcaaa tttccgcact actcatctcc aaatgttcac gcatcataaa tactcgtgct
    43021 tgctgggcgg gtaatttatt taaacaaata tcaaaaattg cccaaaattc tttttggtaa
    43081 gttgattgag ctacccccct ccattcagtt acatcttgat gttccaacca atgatcgtgg
    43141 cgatcgaaaa aggcacttgg tgattcttct tcctcacata gagaactgac tggaatatgt
    43201 cgttttcgtg ttctgagtaa atctaaaatt ttgttcttta aaatagcaaa aatccaagtt
    43261 ttaagtgcag cttctcgccg aaaagaggct gaatgcttat aggcattggt taaggcatcc
    43321 tgtacaacat cctcagctaa atctttatcg gctagttgta gggtggcaaa tttaaccatt
    43381 tgctttctaa tctcttctat ctgtgtagaa gatagactct tcatatatct cctttaggga
    43441 atacccaata aaaaattaca cttattttgt aagaattcta gatcagctga gtccaaaata
    43501 ataacaacaa ttcataaaaa aaggatagtt cgatgaaaaa attaacaatt caagatgtta
    43561 cacccgaaac tattttctac caacgccgta aaattattac cgcgttaggt ttaggtattg
    43621 cagcttctgc attgcctaaa gtaagtatgg cagaaacaca aagacacttg caatcactac
    43681 agtttaaacc ggatccaaat aaagggcttg aactcactcc ggaaaacaaa gtaataggct
    43741 ataacaattt ctatgagttt ggcgtggata aaagtgcacc agcaaaaaat gcggcaaact
    43801 tcaaaaccga tccttggaca ttggaaattg gcggagaagt tgaaaatccg tttagcttaa
    43861 atcatcaaca attgcttaat acgtttccac tagaagaacg catttaccgt tttcgctgtg
    43921 ttgaagcgtg gtcaatggtt gtgccgtgga tcggctttga gttagctcgc ttaattgaga
    43981 tggcaaaacc aaccagtaaa gccaaatatg tggtctttca cactttatat gatcctgcac
    44041 aaatgccggg gcaaaaaaat cgcttgctag gcggtgggat tgattatcct tatgtagaag
    44101 ctttacgctt agatgaagcc ttaaattcat taacactact atccgtcggt ttatacggta
    44161 aaaccctgcc accgcaaaac ggtgctccta ttcgcttagt cgtgccttgg aaatatggct
    44221 ttaaaagtat taagtcgatt gtgaaaatca cctttgctga aaaacgccca ctcactactt
    44281 gggaaagtct tgctccaaat gaatatggct tttatgctaa tgtgaatcca aatgttgatc
    44341 atccacgttg gtcgcaagca tctgaacgag taattggtgc aggcgggtta ttatccgtca
    44401 aacgccaacc aacactaatg tttaatggct acgaaaatga agtggcaaat ttataccgtg
    44461 gcttagattt aaaggtgaac tactaatgct aacctggtta cgtatactca ttcatcttgg
    44521 ctgtttatta ccgctagttt gggtagcaca gctattatat acgggtaatg aaacaatatt
    44581 aggtgccgat ccgattaaag agctggagca ttttctcggt tatggtgcaa tcgtcatttt
    44641 ttgtataatg tttctacttg gtattgccct acaataccta aagaaaaacc agtatcaaat
    44701 tttacgccgt ccattgggct tatgggcgtt tgtatgggca gctctacata tttcaagcta
    44761 tctattgtta gaattaagcc ttgatgtaaa attatttttt agcgagcttg ccggtcgccc
    44821 atatttgatt ttaggagcag ctgctttttt cattctaagc ataatggcaa taacttcgct
    44881 gcctatgcta aaacgaaaat taggaacacg ctgggggacg attcaccagt gggcttatcc
    44941 tgcattagta ttggcgatgg tacattatta ttggtcggta aagagcgtaa cattcgatcc
    45001 aattatcatc ggagtcttag tgctgtttat tgttgctcat aaaatacagg ctaaatttgc
    45061 aaaaaaatag caaaatcaca ccgcttgcag cagtcaaact acatacaaaa aataaggggc
    45121 tgtcctagat aacgactaaa ac
//
LOCUS       DANLXK010000004        42017 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.004, whole genome shotgun sequence.
ACCESSION   DANLXK010000004 DANLXK010000000
VERSION     DANLXK010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42017
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            193..489
                     /locus_tag="PXD88_000155"
     CDS             193..489
                     /locus_tag="PXD88_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL6279780.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            479..895
                     /locus_tag="PXD88_000156"
     CDS             479..895
                     /locus_tag="PXD88_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL6279781.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            895..2553
                     /locus_tag="PXD88_000157"
     CDS             895..2553
                     /locus_tag="PXD88_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL6279782.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2639..3286
                     /locus_tag="PXD88_000158"
     CDS             2639..3286
                     /locus_tag="PXD88_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL6279783.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQYKGSGNCSATFSFDFCRINLLL"
     gene            complement(3270..4208)
                     /gene="ttcA"
                     /locus_tag="PXD88_000159"
     CDS             complement(3270..4208)
                     /gene="ttcA"
                     /locus_tag="PXD88_000159"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL6279784.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(4271..4984)
                     /gene="ubiG"
                     /locus_tag="PXD88_000160"
     CDS             complement(4271..4984)
                     /gene="ubiG"
                     /locus_tag="PXD88_000160"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL6279785.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            5049..5429
                     /locus_tag="PXD88_000161"
     CDS             5049..5429
                     /locus_tag="PXD88_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL6279786.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5526..8222
                     /gene="gyrA"
                     /locus_tag="PXD88_000162"
     CDS             5526..8222
                     /gene="gyrA"
                     /locus_tag="PXD88_000162"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL6279787.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            8317..10281
                     /locus_tag="PXD88_000163"
     CDS             8317..10281
                     /locus_tag="PXD88_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6279788.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            10363..11121
                     /gene="tcdA"
                     /locus_tag="PXD88_000164"
     CDS             10363..11121
                     /gene="tcdA"
                     /locus_tag="PXD88_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL6279789.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            11168..12535
                     /locus_tag="PXD88_000165"
     CDS             11168..12535
                     /locus_tag="PXD88_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL6279790.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            12555..14102
                     /locus_tag="PXD88_000166"
     CDS             12555..14102
                     /locus_tag="PXD88_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL6279791.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            14325..15359
                     /gene="metN"
                     /locus_tag="PXD88_000167"
     CDS             14325..15359
                     /gene="metN"
                     /locus_tag="PXD88_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL6279792.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            15349..16026
                     /locus_tag="PXD88_000168"
     CDS             15349..16026
                     /locus_tag="PXD88_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6279793.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            16049..16882
                     /locus_tag="PXD88_000169"
     CDS             16049..16882
                     /locus_tag="PXD88_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL6279794.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            16965..17795
                     /locus_tag="PXD88_000170"
     CDS             16965..17795
                     /locus_tag="PXD88_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL6279795.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            17847..18638
                     /gene="metQ"
                     /locus_tag="PXD88_000171"
     CDS             17847..18638
                     /gene="metQ"
                     /locus_tag="PXD88_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL6279796.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(18683..19834)
                     /gene="metK"
                     /locus_tag="PXD88_000172"
     CDS             complement(18683..19834)
                     /gene="metK"
                     /locus_tag="PXD88_000172"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL6279797.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
     gene            complement(20017..20859)
                     /locus_tag="PXD88_000173"
     CDS             complement(20017..20859)
                     /locus_tag="PXD88_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL6279798.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            20919..21236
                     /locus_tag="PXD88_000174"
     CDS             20919..21236
                     /locus_tag="PXD88_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL6279799.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            21327..22040
                     /locus_tag="PXD88_000175"
     CDS             21327..22040
                     /locus_tag="PXD88_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL6279800.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            22040..22534
                     /locus_tag="PXD88_000176"
     CDS             22040..22534
                     /locus_tag="PXD88_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL6279801.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            22639..23919
                     /locus_tag="PXD88_000177"
     CDS             22639..23919
                     /locus_tag="PXD88_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL6279802.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(24006..25043)
                     /locus_tag="PXD88_000178"
     CDS             complement(24006..25043)
                     /locus_tag="PXD88_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6279803.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            25265..25963
                     /locus_tag="PXD88_000179"
     CDS             25265..25963
                     /locus_tag="PXD88_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL6279804.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFFKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            25974..26276
                     /locus_tag="PXD88_000180"
     CDS             25974..26276
                     /locus_tag="PXD88_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL6279805.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(26397..27698)
                     /locus_tag="PXD88_000181"
     CDS             complement(26397..27698)
                     /locus_tag="PXD88_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL6279806.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(27831..28805)
                     /gene="secF"
                     /locus_tag="PXD88_000182"
     CDS             complement(27831..28805)
                     /gene="secF"
                     /locus_tag="PXD88_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL6279807.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(28815..30656)
                     /gene="secD"
                     /locus_tag="PXD88_000183"
     CDS             complement(28815..30656)
                     /gene="secD"
                     /locus_tag="PXD88_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL6279808.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(30696..30989)
                     /gene="yajC"
                     /locus_tag="PXD88_000184"
     CDS             complement(30696..30989)
                     /gene="yajC"
                     /locus_tag="PXD88_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL6279809.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            31190..31747
                     /locus_tag="PXD88_000185"
     CDS             31190..31747
                     /locus_tag="PXD88_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL6279810.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(31788..32756)
                     /locus_tag="PXD88_000186"
     CDS             complement(31788..32756)
                     /locus_tag="PXD88_000186"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL6279811.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(32882..34045)
                     /gene="galK"
                     /locus_tag="PXD88_000187"
     CDS             complement(32882..34045)
                     /gene="galK"
                     /locus_tag="PXD88_000187"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL6279812.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(34055..35101)
                     /gene="galT"
                     /locus_tag="PXD88_000188"
     CDS             complement(34055..35101)
                     /gene="galT"
                     /locus_tag="PXD88_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL6279813.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            35314..36165
                     /locus_tag="PXD88_000189"
     CDS             35314..36165
                     /locus_tag="PXD88_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL6279814.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(36251..37336)
                     /locus_tag="PXD88_000190"
     CDS             complement(36251..37336)
                     /locus_tag="PXD88_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6279815.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(37358..38338)
                     /locus_tag="PXD88_000191"
     CDS             complement(37358..38338)
                     /locus_tag="PXD88_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL6279816.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(38441..39539)
                     /gene="prfB"
                     /locus_tag="PXD88_000192"
     CDS             complement(join(38441..39463,39465..39539))
                     /gene="prfB"
                     /locus_tag="PXD88_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL6279817.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            39795..40703
                     /locus_tag="PXD88_000193"
     CDS             39795..40703
                     /locus_tag="PXD88_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL6279818.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            41004..41645
                     /locus_tag="PXD88_000194"
     CDS             41004..41645
                     /locus_tag="PXD88_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL6279819.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            complement(41629..41793)
                     /locus_tag="PXD88_000195"
     CDS             complement(41629..41793)
                     /locus_tag="PXD88_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279820.1"
                     /translation="MRILSTNATNNVVLITQFHKSPQKNRHTSGAFLPFFCKFADDET
                     GFRIRPKSPE"
     gene            41812..>42017
                     /locus_tag="PXD88_000196"
     CDS             41812..>42017
                     /locus_tag="PXD88_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL6279821.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT        12190 a         8539 c         9376 g        11912 t
ORIGIN      
        1 gcctggagat agaacctaca tataatatgc tctactacat taagccataa aaaatagaaa
       61 atcaagtgtt tgttcaagtt tttatgttat tgaatttaca ataactacaa aaatttatct
      121 taattggctc gattgatttt tacacaaaac atagctaaca tatccaaaat cactcacatt
      181 aggagcttaa aaatgacagc gattactatc cctcaatttg aagaggtgac ttctaagcaa
      241 tttcaatctg agttcggcag aattgttgat atcgtaaaag gcaaaacccc tgtggcgatt
      301 acccaatatg gcagaccgac aatggtgctt tttccttacg atcaagcggt tgaagctcgg
      361 cgattattag caaaacagcg tttgcttgaa atgcttgcag agcgagataa gaatccgccg
      421 gcagctcttg cagaaatcac gcttgaagag ttggataaaa tgattgatga ggaacgtaat
      481 gcactctgat tatttagtga ttgatacgaa tattttgatt agtggtttat tgttcccaaa
      541 atcaaatccc aatttagcag tgaaaaaagc cttattaggc tataccattt gtgtctcgca
      601 agcgactttt gacgaatttt tagaagtctc cgctagaccg aaatttgcta aatatttcag
      661 tattcaggaa agggaagaat ttattgccaa tttgttggat gcagtaaagt ttgtggaaat
      721 taaagaaacg attacagatt gccaagatcc caaagataat aaatttttag aagtggcgat
      781 cagtgcaaaa gcgaagtatt tagtgacggg cgataaaaaa gatctcctca gtatgaaccc
      841 ttatcggaat gttgaaatta tttccgtcag cgaattttta gcggaaactc gctaatgaaa
      901 cggtttctca ctctttttct tctccttttt tcatcttttt cattagccga aacccaccaa
      961 atcggcattc tcgctcagcg tggggaagcc tacacccgca cccattggca gccttgggtg
     1021 gattggttaa attcgcagtt tcccaacgag cggtttgagc tggttccatt ggggattaac
     1081 gaggcgagcc gccgggcgga gttggatttt ctgctgacca atcaagctca gtttttctat
     1141 ttgagtaacc aaaatgtgcg atggcttgcc acgctcaaca gtccgttttc ggcaaatggt
     1201 gagcaagggg cggtgggcag tagcatttgg gtgcgtgccg acagccatta tcagcagtta
     1261 agcgatctga aaaatcagac tatcagtgcg gtggataacg atgctttcgg cggttttttg
     1321 cttgggttgt atcagtttca tcaagcagga atgcggcaaa atcgggattt ttcggtgcag
     1381 tttagcggtt ttccggtgga aaatgcgttg gctttgctgg cggaaaaaca ggtggaagcg
     1441 gcgattgtac cggtctgttt gctggaagag ttggagaaag agggcaagtt caagcggtcg
     1501 gattttcgct taattttgca aaacccacag gcgcagggtt gccttgccag cacgccgttg
     1561 ttgccgaact ggtcgctggc ggcaatggaa aatgtgccaa acgagctggc ggtacagctt
     1621 gccacacgct tgctaaacag ccacaatccc gacctacccc gctggacgtt gccgttttct
     1681 tccgcccaag ccgatcacat tctgcgtgaa ctgtatcgcc acccgcaaca aaaaagcctg
     1741 tgggcaacgg tgctggattg ggttcgtctc aataaattcg gcttgttggc ggtggtgttg
     1801 ttcattttgc tcaaccttgt cgccctgcgt tatcaggtct atcgcaaaag caaggcgtta
     1861 cagcaggcac actgcaaaat gcagcagtat cagcaggaac tgacccgagc cgaccgcctt
     1921 gctttgttgg gcgagatgac aaccggtttt gctcacgaac tgaaacagcc gttgtcggcg
     1981 gtgcgaatgt acgccgaggg gctgaaaagc caaaacagcg atccttatca acagcggatt
     2041 ttggataagc tgattgcgca ggtagatcgg gcagtgaaaa cgatgcagag cattcgggac
     2101 tgggcgcaaa accgcccgag tggtgaaccg caagcggtca ttttgaacca attgattact
     2161 aatgtgatcg agtttgtggc ggtggaaaat cgccagaatg cacaaatctc gctgattgcc
     2221 gaccgcactt ttcggcttaa tttacacgcc acggtactgg aacaagtact gacgaactgc
     2281 ctgctcaacg ccctgcaagc cggtgcaagc gagatatcgg tgcggttaca agcggtcgaa
     2341 aacgggctgg aaattgcaat cgaagacaac ggcggcggtt tttcccctgc ccagcttgaa
     2401 tttccgtttg tgccatttcg caccgacaaa ccacacggct tagggctagg cttggtgcta
     2461 tgccaacggc tgatgcaatc gctcaacgga cggattgtat tggcgaacgg ggagaacggg
     2521 gcgaaggtag tgcttttact ccctcaaata taaatgtagg ggcaggtcct gtgcctgccc
     2581 gtaaatccta tcaaattcag ggcgggcaca ggacccgccc ctacggaaaa aagaaaaaat
     2641 gattattcac attcttgatg acgaagaaag cattttagac gctatgtcgt tcctgcttgc
     2701 cccgcttggg gtggaaatcc aaacgtggca atccagccta gattttttgg cacaggcgga
     2761 tttacaccgg caaggcgtgc tgttactaga tattcgaatg ccgctgccag acgggcaaca
     2821 ggttcatcaa caactgcgag aggcacaatc gaccctggcg gtggtgatta tgaccgccca
     2881 cggtgatgtg ccgatggcag tcgctgaatt gaaaaaaggc gcagtggatt ttctgcaaaa
     2941 gccggcaagt tttgaacagc taaaacaggc gattgcacag gcggaaaaag taagtgaaaa
     3001 agcggtgaaa attcgtgaaa tttcgcaaaa ttacgccaaa ttgacggaaa aagagcgtaa
     3061 ccttgtgcca ctgattatgc aaggtttcac caataaacag atcgcagata aattagcgat
     3121 ttcagtgcgt acggtggaag tacatcgagc caatgtgatg gaaaaaatgc aggcggagag
     3181 tttggcgggg ctggtgcaga tgatcgggga gttacaatat aaaggtagcg gaaattgctc
     3241 tgctaccttt agtttcgact tttgccgtat taatttactt ctttaaactg aatcattccc
     3301 gcttcggcaa aattgttatc gtcatcttcg tataagaagg ttttggcttc aattttgaca
     3361 tcatcaaaag cggtgtcgcc ttctatgcct tcaatggttt gaccgtgttt aatcccttta
     3421 aaatcaaaca atttcggatc gcataagtgg gatggcacga tatcttgcaa agcactgaac
     3481 attgtttcta aacgccccgg gtattggcga tcccaagtat tcagcatttc tttcaccact
     3541 tggcgttgta aattaggctg agaaccacac agattacacg gaataatcgg gaactgcttg
     3601 gcttcggcat atttgataat gtctttttct ttacaatagg cgagtgggcg gatcacaatt
     3661 tgcttgccgt catcagagat cagtttaggt ggcatacttt tcattttgcc gccgtagaac
     3721 atatttaaga ataaagtcgc cagcatatcg tcacggtgat gccctaatgc aattttggtt
     3781 gcacccaatt cggtggcggt gcggtataaa atcccacggc gaagtcgtga gcaaagtgaa
     3841 caggtggttt tgccctccgg aattttctct tttacgatgc cgtaggtgtt ttcttccaca
     3901 attttgtatt ccacgccaat gctttctaaa tagcgaggca atacctcttc cggaaatccc
     3961 ggttgctttt ggtctaaatt gaccgctacc acactaaaat tcaccggtgc actttgctgt
     4021 aaattgagca aaatatctaa cagcgtatag ctgtctttac cgccggaaag gcagaccatt
     4081 acacggtcgc cctcttcaat cataccaaaa tcggcaatgg cattaccgac attacggcgt
     4141 aaacgttttt gtaacttgtt gaaattataa gtaatttttt tatcagattt ttgaatatcg
     4201 tctgtcataa tagttgtact aggcttagaa attagcggtg tatagtaaag atttcgcact
     4261 attttgcaag ttaattattc ggcttcagcg tagcgatata gttacaactc acatcattat
     4321 tgagccaaaa tttttcggtt aatgggttga aatggtagcc tctcatctct tggcaacgta
     4381 aatcagcctg atcgcaccaa gctaacaatt cggcaggctt gatgaatttt tcaaattcgt
     4441 gcgtgccttt tggcaacatt ttcagcacat attccgcccc gataattacc aacatatagg
     4501 ctttaaaagt acggttgatg gtagagaaaa acagcacgcc gtcaggtttg agcagggctt
     4561 tacagctttg aatgatagaa agcggatcgg gaacgtgttc cagcatttcc atacaagtaa
     4621 tcacatcgaa tttttcttga ttacaagcgg tcatttttgc taaaaaattt tcaatcgtgg
     4681 tttgttggta atcaatctct aacccacttt ctttggcgtg ctgctttgcc acttcaagcg
     4741 gttgagaggt catatcgatg ccggtaacaa tcgctccctg ttttgccatt gcctcactta
     4801 aaataccgcc accacagccg acatctaaca cctttttgcc aaataaaccg ttcgattttt
     4861 ctaaaatata ggctaaacgc agtggattaa gcagatgaat cggcttgaaa ctgccgtttg
     4921 gatcccacca ggttttagcc atattttcaa attttgtgat ttcttgctga tcgacgtttt
     4981 gcataaactg ttcctatggt aaatttaggg cattactata acgcatttag cctaaaagga
     5041 aaatcagaat gacccgaatt aaccttgttc cgccaacgga attatgcgat caacatctgc
     5101 ttgccgaaca tcgtgaactt actcggattc cgaatgcggt agcgaaaggc aaatttagcc
     5161 taaaaggaca gccagaagat tacaaactgg gcgagggaca cgttcggttt ttcttcaata
     5221 aactcacgtt tttgaaaaag cgttacgatg cgttacacga ggaatgttta gcaagaggtt
     5281 ttaaggtgca atatttctgg gcggaacatt taccacaaga tccctctctc tggctagatt
     5341 atcagccgac tgaaaccgct ctgactgtaa atcgggagcg aattgcatta agaatgccgg
     5401 caaatccacg ttttagcgaa agaaaatgac cgcttgtacg cctttttgtt gctttttatg
     5461 ctataatctc gccaattttt tcgccttatt taaggctctt ttactaataa aattaggaaa
     5521 tttcaatgag cgaattagcc aaagatatta ttcccgtaag tattgaggac gaattaaaaa
     5581 cctcttacct tgactatgcg atgtcggtga ttgttgggcg tgccttgcct gatgtacgag
     5641 acggtttaaa gccggtacac cgccgagtgc ttttttcaat ggatcaaaac agcaacacct
     5701 ataataagcc gcacgttaaa tctgcccgtg tggtcggtga tgtgatcggt aaatatcacc
     5761 cacacggtga ctttgcggtg tataacacta ttgtgcgtat ggctcaaccg ttctcactac
     5821 gttatatgtt ggtggacggg caaggtaact ttggttctat tgatggcgat gcaccggcag
     5881 caatgcgtta taccgaagtg cgtatgcaga aaattacgca ggaattatta accgatctcg
     5941 ataaagaaac ggtggatttc tcaccgaact atgacggcaa agagatgatt cctgatgtat
     6001 tgccaaccaa aattccggct ctgttagtca atggttcttc agggattgcg gtcggtatgg
     6061 caaccaatat tccacctcat aatttaggcg aagtattaga tggttgcttg gcgtatattg
     6121 aaaatgaaca gattagtgtt gaagagctaa tgcgttatat cccggggccg gatttcccga
     6181 ccggggcgat tatcaacggt cgtaaaggga ttgaagaggc ttaccgcacc ggtcgtggca
     6241 aggtgtatgt gcgcgcgaaa gccagcgtgg aaacaactga taaagggcgt gagcaaattg
     6301 ttgtaaccga actgccatac caagtgaata aggcaaaatt aattgaaaaa attgccgagc
     6361 tggttaaaga gaagaaaatc gaaggcatca gcaaaattga tgactattcc gataaaaaag
     6421 ggatttcgat tgttattgaa gtcaagcgtg atgcagtggg tgaagtggtg ttaaaccacc
     6481 tttattcttt aacccaaatg caggtcacgt ttggtatcaa tatggtggcg ttagataatg
     6541 ggcagccaaa agtgctgaac ttacgccaga tcatcgaagc ctttgttaaa caccgtcgtg
     6601 aagtggtcac acgccgtacg atttttgaat tgcgtaaagc ccgtgaacgt gcccatattt
     6661 tagaaggttt ggcgattgcg ttagcgaata tcgacccggt aattgaatta attcgagcct
     6721 caaaaaccgc agaagaagcc cgtgaaggct tattggctcg cccttgggca ttaggcaatg
     6781 ttgcaccaat gttagaggct gctggtgttg gtgcttcccg accggaagat ttacctgaac
     6841 acttaggagt gcgtgatggc gaatactatt tatctgaagc tcaagccaga gcgattttag
     6901 agctacgctt acaccgctta accggtttag aacacgagaa aatcgttgaa gaatacaaag
     6961 aactcttaac tgaaattggc gaattaatcc acattttaac cagcccagaa cgcttaatgg
     7021 aagtgatccg tgaagagtta gaacgtgtaa aaaccgattt taatgatgaa cgccgtactg
     7081 aaattaccgc agcctctggc gacatcaaca ttgaagactt aatcgcacaa gaagatgtgg
     7141 tggttacgct ttctcacgcc ggctatgtga aatatcagcc gttatccgac tacgaagcac
     7201 aacgccgtgg cggtaaaggt aagtcggcaa ccaagatgaa agaagatgat ttcatcgaaa
     7261 aactcttggt ggcaaacacc cacgacacca ttctttgctt ctcaagccgt gggcgtttat
     7321 atcaattaaa agtgtatcaa ttaccgcaag caagccgtgg ggcaagaggc acgccgattg
     7381 tgaatattct gccgttagtg aaagaagaaa acgaacgtat taccgcgatt ctaccgattc
     7441 caaacggtga atttagtgcc gataagttta tctttatggc aacagctagc ggtgtagtga
     7501 aaaaagtttc ccttgatgcc tttagcaacg tgcgtgcaag cggtctgatt gcgttaaaac
     7561 ttcgtgaagg cgatgagctg atcggggtag atattactga tggtaacagc gaaattatgt
     7621 tgttctcggc acaagggcga gtagttcgct ttgccgaaac agcagttcgt gcgatgggac
     7681 gtaccgccac cggcgtacga ggtattaaac tttctaccac cgaaatttca agcgaagaaa
     7741 ttgaagaagc tgaaattatt gaaactgaca atgaagaggc agaagattcc tccagcgtca
     7801 gccttgataa agaccgtgtg gtttctttag tgattcctcg caccgaaggc gatattttaa
     7861 ccgtcaccca aaacggctac ggtaaacgta cggtgattag cgaatatccg gtgaaatccc
     7921 gagcaaccaa aggggtcgtt tcgattaaag tgaatgaacg aaacggcaaa gtggttgcgg
     7981 cagttcaagt agaggaaacc gaccaaatta tgttgattac cgatgccggc acgctggttc
     8041 gcacccgagt ggcagaagtc agcctcgttg gacgaaacac ccaaggcgta cgtattattc
     8101 gcaccgcaga agacgaacaa gttgttagcc ttgaacgagt ctgcgagcct gaagacgatg
     8161 aaaatgaaag cctagacgca ttagaaaatg ccgaaacagc agaaacatca actgaagaat
     8221 aatcttaact aaacaagcgg tcgaattttc acaatttttt gcaaaaatag aaggaaattc
     8281 gaccgttttt ggatcataca gtagataata aaaactatgg cacttatcaa tctttccaac
     8341 gcctatttag gctttggcga tcatccttta ttggatcata ctgaattaca tatcgaaccc
     8401 ggcgagcggg tttgtttggt ggggcgtaac ggggcgggta aatcgaccct gatgaaaatt
     8461 ctggcgggcg aagttcagct tgatgacggc aagttggtat ttgaaaaaga cattgtcgtt
     8521 acacgtcttg aacaagatcc gccccgccat attgaagaaa cggtgttcga ttatgtggcg
     8581 gaggggattg cccatcttgc cgacttattg aagcaatatc accacatttc cctgcaaatg
     8641 cagaccgatt acagcgatga actgctcgcc aaactttcag cggtgcaatc gcaattagaa
     8701 cacgctaacg gttggcagtt tgaaaaccgc attcaagaca ccttgaaact gctggaactc
     8761 gcccccgaca aacgcctgtg cgaactctca ggcggttggg tacgccgtgc ggcattggct
     8821 cgggcgttgg ttgccgatcc tgatgtattg ctgttggacg aaccgaccaa ccacctcgac
     8881 attgaggcga ttgcgtggct ggaaaatctg ttattggatt tcaaaggcag tattattttt
     8941 atctcgcacg accgtgcctt tatccgcaaa atggcgactc ggattgtgga tttagatcga
     9001 ggcaaattgg tttcctaccc aagcaattac gataaatact tggaagaaaa agccgaggat
     9061 ctgcgagtag aagcgttgca aaatgagctg ttcgacaaaa aactcgccca agaagaagtc
     9121 tggatccgtc aagggattaa ggcaagacgc acccgaaacg aagggcgtgt gcgagcgttg
     9181 aaagcgttgc gtgaagagcg tagaaaccgc cgagaggtac aaggcacggc gaaaattcag
     9241 atcgacaaca ccgcacgcag cggcaaaatt gtgtttgaag tggaaaatgc cggctatgaa
     9301 atcggcggca gaaccctgct gaaaaatttc agcaccacca ttttgcgtgg cgataaaatt
     9361 gccctgattg gagcgaacgg gatcggcaaa accacgctga tcaagctgtt acttggcgaa
     9421 attcagccga catctggttc agtgcgttgt ggcacaaaat tggaagtggc gtacttcgac
     9481 caataccgag tcgatcttga ccctgaaaaa accgtgatgg acaacgtggc agacggcaag
     9541 caagatgtag aagtaaacgg ggtgaaacgc cacgttcttg gctatctgca agacttcctg
     9601 ttcccgccaa aacgggcgat gacaccggtg aaagccctct cgggtggtga acgcaactgc
     9661 ttgttgctgg caaaactgtt actcaaaccg aacaacttgc tgattttgga cgaaccgacc
     9721 aacgatttgg acgtggaaac cctcgaactg ctggaagaga tgctcaccga ctatcaaggc
     9781 accctgatta ttgtgagcca cgaccgtcaa tttgtggata ataccgtaac cgaatgctac
     9841 ttcttcgagg gcgaaggcgt ggtgaataaa tatgtcggcg gctatttcga tgccaaacaa
     9901 cagcaggaaa attacttcgc cgccactgcc gacaagcggt taaattcgag taaaaatttg
     9961 caaaaaatag aggaaaaagc accgcttgcg gagcaagaga aacagaaagc cgatcaggaa
    10021 aaaacgaaag cagagccgac gaagaaaacc aaactttcct acaaagaaca gcgtgaactg
    10081 gacgagttac cggctaaaat ggaacagctt gaagccgaca ttgaagccct gcaagccgaa
    10141 gtaaatagtg ccgaattctt cgccaaagat ccaagctaca ccaacgccca gctacaaaaa
    10201 cttgccgata ccgaagccgc gttagagcaa gcctttgagc ggtgggaagc gttggaaaat
    10261 attaaaaacg ggaatatcta atgtaggggc gaatgattat tcgcccttga tggataaaat
    10321 gattgggcga aaaatttttc gcccctacaa atgtgaagca aaatgacaga aagattagat
    10381 aactacgaac aacgttttgg tggcattggt cgcctttata cgccggaagg attggagaaa
    10441 ctacgccgtt cgcatatttg cgtgattggg attggcgggg ttggctcgtg ggcagtggag
    10501 gcattggctc gctcaggtat cggtaagatc acgatgatcg atatggacga tatttgcgtg
    10561 accaatatca accgccaaat tcacgcaatg agtggcacgg tggctcaact gaaaaccgaa
    10621 gcgatgaaag agcggattga gcggatcaac cctgaatgtg tggtggaaat tattgatgat
    10681 ttcttaacgc aggataatct cgcagactac ctcaatcgag gatatgacta tgtgatcgat
    10741 gcgattgaca gtttgcgggt aaaagcggcg atgattgcgt tttgtaaacg caataagatc
    10801 aaaattatca ccaccggcgg ggcgggcggg cagaccgatc cgaccaaaat tcaaattacc
    10861 gatttaagca aaacggtgca agatccgttg gcggcaaggg ttcgtagcct gttgcgtaaa
    10921 gagtacggtt tcagcaataa aaacaaattc ggcgtggagt gcgtttcttc gactcagcaa
    10981 ctgattttcc cacaaatggg tgaggcctgt gaggtgtcgg caacaatgaa ctgtgccaac
    11041 ggctttggag cggtgacaat ggtgacggca acgttcggct tttttgcggt gagtcgggtg
    11101 attgataaac tattaaaata acaagcggtc atattaaatg aattttttgc aaatcaagga
    11161 gtaaataatg gcaatacatc gagtcaaccc gaaagggagt atggaacagc tttcccattt
    11221 ggaaatggag ttgttggcaa agaatacgca gggtaatttg catcaacttt atcgtaattg
    11281 ctctttggcg gtgctaaatt ccggtgtgca taccgatgac agccgagcgt tgttaagcca
    11341 ataccctgat tttgaaatcc gcttattaac ccgtgaaaaa ggcgtgtcgc ttgaattgca
    11401 taatccaccc gaaactgcgt ttgttgacgg caagatgatt ttgaatattc aatatcacct
    11461 ttttgcggtg ctgcgggata ttgtgtttgt gaatgcgtta aaaaatgcga ttagaccgct
    11521 tgaagagact tctttagaag ccttaaccac gaataccgta ttttcgattt tgcggaatgc
    11581 gaaagcgatt gaaatgaata ccgacccaaa tttggtggtg tgctggggag ggcattcgat
    11641 taatgaaacc gaataccaat attgccgtgc cgtcgggcaa gagtttggct tgcgtgagct
    11701 gaatattgtg accggttgcg gagccggtgt gatggaagcc ccgatgaaag gagcggctat
    11761 cggacacgcc aatcaacgtt ataaaaacgg gcgttttatc ggcattaccg agccgtctat
    11821 tattgcctcc gagccgccaa acccgattgt gaatgaattg gtaattatgc cggatattga
    11881 aaaacggttg gaagcctttg tgcgtttagg gcacgccatt gtggttttcc cgggcgggcc
    11941 gggaacgctg gaagagttgc tgtatattat cggtattaag ttaaacccgg ctaaccatgc
    12001 tcagcaatta ccactgattt taaccgcccc gaaagaatcg gcagactatt tctatgccat
    12061 cgatcaattt attggcgaaa ctttaggcga agaagctcgc agtttgtatg aaattattat
    12121 tgatgactcg gtgttggtgg ctcgtaaagt caagcaagcg atgattgagg taaaaagcag
    12181 ccgttatgaa agtggcgatg cttataattt caactggtcg ttaaaaattg aggaagattt
    12241 tattacgcca tttattccaa cccacgaaaa tatggcaaac ctgaatttaa gtttagcaca
    12301 gccaaaagag cagctggctg cgaatttaag acgggcattt tcagggattg ttgcaggtaa
    12361 tattaagccg gagacctccg atttaattga gaaatatggg gtgtttaaat tacacggcga
    12421 tcgtaaatta atggagcata tagataaact gttggagcgt tttgtggttc aacaccgtat
    12481 gaaaattcca acgggtgagg cgtaccaacc ttgctatgaa attgtaaaag ggtaatgcta
    12541 acaaggggta aggtatgtat ttaaagcata ttgaaatcag tggctttcgt ggtattaacc
    12601 atttatcgct ccagctacga ccaaatatgg tattgattgg cgaaaatgcg tgggggaaat
    12661 ccagtctgat tgatgcatta agcctgattt ttaaccttga gcaggcgttg tatcaatttc
    12721 agttcaaaga tttccatatt caatacaccg atacccccaa ccaagtgcgg gacattcaac
    12781 tggtgtttac cttttgtgaa gagcatcagc acgatttagc ggtgcaattt cccgcttatt
    12841 tggcacaagc cgcgttttat attgataatc accgctgtgt ttcgcttgcc gtaaccggaa
    12901 aattacacgg agagcagatt agcaccgact atcaatttgt ggatcaaagc ctaaaaccga
    12961 tccagataga acaagcggaa aacgccattc ggcagtttat ttaccatcac cctgtttatc
    13021 gcctgcgtga tgcaaggctc aataacaggg tgcataatga attattactt aaaggatcgt
    13081 ctcaacttga agacgatttt caacgtgaat taaacgccct ctcttcgcta ctgaaatact
    13141 attttctaac cagccaaagt cgctatttga tcaaaaccag tatgcaagac accgcattgt
    13201 ggtgggaaaa agtaaaatcc ctctgtttac gcctaaaaca gcagccggaa ttggtcgaat
    13261 ctgctcagca gcatatttct actctatttt tgtttaatcc tagatctaca gtaatagaaa
    13321 agccgattat tttatttgaa gatctgaatg ctcaactaca ccctcgaatg attgcgattt
    13381 tttgggaact gctcggtttt ttacccagcc aacggatcac cactactaat tctattgaat
    13441 tgttatcgca agtgcctctg cgtgaaatct gccgtttggt gcgtcatcac gatcataccc
    13501 aagcctattg gcttgaacgc cacagtttag gcaaggaaga tttgcgaaaa ttaacctttc
    13561 atattcacca taatcgtggc ttggcactgt ttgctaaagc gtggattttg gttgaggggg
    13621 aaacggaggt ttggattttg caagagctgg cgagattatt agatattcat ttggaaatgg
    13681 aagggatcaa aatcgttgaa tttgctcagt gtggcttacg tccgttaatt aaatacgcca
    13741 gagcaatggg gatcgaatgg tatgtgctga ctgacggtga cgattccggc aaacgttatg
    13801 cagatacggt aaaaagtatg gaagaggatt ttgctcaccg gctcacgatg ttgccacaaa
    13861 aagatatcga acattttttc tacaaagcag gcttgcggaa tgtgtttata cagcttgcaa
    13921 attggcgttc acaagaaaaa tatccggtgt cctacatcat taaacgagcg attcaacgaa
    13981 gctcaaagcc tgatttagcc attgcattag ccaatgagat ggggcaacgg ggagagcatt
    14041 caattccaac tttatttaaa caattatttg cagatgtgct ggcattgata aacaaagtat
    14101 agaatacaag cggttaaatt tgacaaaaaa ttgccaattt tgaccgcttg tttgcttgtg
    14161 atgaaaacca atcatacaaa actctaattt atttcaagtg caagctatta ttttatgcgt
    14221 tatgcttatt tggaataaaa aaatcgggtt agttgattga catagcattc tagacgtcta
    14281 aaataaccaa aaataatagt taattgaatg tggataaata gaaaatgatt cagctgaaaa
    14341 atatcagcaa acaatttgag gtaaagggca aaaaaattac cgctctggat aatgtaaacc
    14401 tagaagtacc aagaggcact atttatggtg tcattggggc atcaggggca ggaaaaagta
    14461 ccttaattcg ctgtgtaaat ttattagaac gcccaacaat cgggcaagtg attgtcgatg
    14521 ggcaagattt aacggcaatg tcggataaag agttgattca cgctcgccgt aatattgcaa
    14581 tgattttcca acattttaat ttgctttcat cacaaactgt atttgaaaac gtggcgttat
    14641 cgttgcgttt aagcaatacg ccaaaagagc aagttgagaa gaaagtcaat gagctgttgg
    14701 atttagtggg gttaacagat cgtaaagatg tttaccctgc aaatctttcc ggtgggcaga
    14761 aacagcgtgt agcgattgct cgtgcgttag ccagcgatcc acacgttttg ttgtgtgatg
    14821 aagcgaccag tgcgttagat ccggcgacta cgcaatccat tttgcagcta ttaaaagata
    14881 ttaataaacg tcttggtttg acgattttat taatcactca cgaaatggaa gtggtaaaac
    14941 gcatttgtga ccgagtagca gtgattgata aagggcagtt gattgaatct ggctcggtaa
    15001 gtgaaatttt ctcgaatccg aaaaccgaat tagctcagaa atttattcaa tcgactttcc
    15061 attttgaatt accgcaagaa tataccgagc agctttcaag ttcgccgact gaacatagta
    15121 agccgattat taaatttgag tttaccggac gttcggtgga tgcacctttg ctttcaatgg
    15181 catcgaagaa attcggcatt gattttagta ttttgatgtc gcaaattgat tatgcaggcg
    15241 gggtcaaatt tggatttgta attgcagaag tgagtggtaa tccggattcc attgcagagg
    15301 caaaatttta tttaattgat aacaatgtaa aagtagaggt gttaggctat gtgggctgat
    15361 tttatgcagg agatgacgcc acagatgtgg agcttagtat gggaatctac ttttgaaacc
    15421 gtttatatgg gctttgtggc aacggcattg gcggtagtca tcggtttacc gattggtttc
    15481 ttggcgtttt taaccggtaa aggcgaaatt ttagaaaatc cgagattaca ccaagtgtta
    15541 gatgtcgtta ttaacatcgg gcgttcgatt ccgttcatta ttttattgat tattttgttg
    15601 ccatttactc gcttagttgt gggcacaaca ttaggcacaa cggcagcgat tgttccttta
    15661 agtgtttcgg ccattccgtt ttttgcccgt ttaacttcaa atgcgttgct tgaaattccg
    15721 tccggtttaa cagaagcggc aaaatcaatg ggagcaacaa attggcaggt agtgacaaaa
    15781 ttttatttac cggagtcatt accgattttg attaatggca ttacgctaac gctggttgct
    15841 ttaattggct actcagcaat ggcgggggct gttggtggcg gcggtttagg caatttagcg
    15901 attagctatg gcgaacaccg taatatggtg tatgtgaaat ggattgctac cattattatt
    15961 gttgcgattg tgatgattag ccaaaaattg ggtgatcatt tagcaaaacg ttacgatcat
    16021 cgttaatttt atttaaaaag aggtttctat gagtttcaag aaaattttag gcgttgcatt
    16081 ggtttctgca ttagcattaa ccgcttgtaa agaagagaaa aaggcagaat ctaccgctgc
    16141 tccggcagct caagctccgg ctaaaatcaa agtaggggta atgtcaggcc ctgagcatac
    16201 cgttgcagaa cgtgcagcac agattgcaaa agaaaaatat ggtttagaag ttgagttcgt
    16261 tttatttaac gactacgctt taccgaatac tgcagtaagt aaaggtgatt tagatgcaaa
    16321 cgcattccaa cacaaaccat atttagataa agacagccaa tcaaaaggtt taaacaactt
    16381 agtgattgtg ggtaacacct ttgtttatcc gttagcgggc tactctaaaa aagtgaaaaa
    16441 tgtgtctgag ttagcagaag gtgcggtaat tgcagtacca aatgatcctt caaacttagc
    16501 tcgtgctttg attttattag aaaaacaggg gttaattaaa ttaaaagata ataccaattt
    16561 attctcaact tcagtggata ttatcgaaaa tccgaaaaac ttaaaaatta aagaagtgga
    16621 tacttcaatt gccgcaaaag cgttagatga cgtagattta gcggtggtaa ataacactta
    16681 tgccgggcag gtaggcttaa atacccaaga tcacggtgta tttgttgagt ctaaagattc
    16741 accgtatgtg aatattattg tggctcgcca agacaataaa gatgcagcta atgtacaaaa
    16801 ctttattaaa tcttaccaaa ccgaagaagt gtaccaagaa gcacaaaaac actttaaaga
    16861 tggtgtagta aaaggttggt aatttagctg atttttactt aaatggcgat taagcgctag
    16921 gttaatcgcc attttcatct ttaaaatata ggaaggagca aacaatgaac tttaaaaaat
    16981 tattaggtgt ggcgttagta tctgccttag cacttactgc gtgtaaagat gaaaaagcac
    17041 aagcacctgc tacaacagct aaaactgaaa acaaagcccc attaaaagtg ggtgtgatga
    17101 ccggccctga agcccaaatg accgaagtgg cagtgaaaat tgcaaaagag aaatatggct
    17161 tagatgtaga gttagtgcag tttactgaat acactcaacc aaatgccgca cttcattcta
    17221 aagatttaga tgctaacgcg ttccaaacgg tgccttattt agagcaagaa gtgaaagatc
    17281 gtggttataa attagcgatt atcggcaata cgctagtatg gccaatcgcg gcttattcta
    17341 aaaaaattaa aaacatttcc gagttaaaag acggagcgac tgttgcgatt ccaaacaatg
    17401 caagtaatac tgctcgtgcg ttattattgc ttcaagctca cggtttattg aaattaaaag
    17461 atccgaaaaa tgtgtttgct accgaaaacg atattatcga aaacccgaaa aatatcaaaa
    17521 tcgtacaggc ggatacctca cttttaaccc gtatgttaga tgatgtagaa cttgcggtaa
    17581 tcaacaacac ttacgcaggt caagctgggt taagtccgga taaagacggt attattgtgg
    17641 aatctaaaga ttcaccgtat gtgaatttag tggtaagtcg tgaagataat aaagatgacc
    17701 cacgcttaca aacttttgtg aagtcattcc aaaccgaaga agtattccaa gaagcgttaa
    17761 aattatttaa cggtggtgtg gtgaaaggtt ggtaatcagt tggacggcat attctgccgt
    17821 ccttttctta aaaggagaaa cagataatga aaataatgaa attagccggt gcagttgcaa
    17881 ttttctcgct ttttttaacc gcttgtaatg ataaagccga aaagttgaaa gtcggtgtga
    17941 tttccggccc tgaacataag gtaatggaag tggcggcaaa aattgcaaag gaaaaatata
    18001 accgtgatgt tgaattagtg gtatttaccg attatgccac gcctaatgca gctttagata
    18061 aaggcgatct tgatttgaat gctttccagc ataaacctta tttagataac caaattcagg
    18121 aaaaaggcta taaattagtg ccggtcggca atacttttgt ttatccgatt gcggcttatt
    18181 ccaaaaaaat taaatcgctg gcagagttga aagatggtga tactattgca gtgcctaatg
    18241 atccgactaa tttagcccgt gctttaattt tattggaaaa acaagattta attaagctgc
    18301 gagcagatgc aggcttaaaa gcaaccagtg tggatattat tgaaaaccct cgtaaattgg
    18361 tgatccaaga aattgaagca ccattattgc ctcgaacgtt ggacgatgtt gccttttcga
    18421 ttattaatac tacctacgca gggcaaaacg gtttaacgcc aaccaaagac ggaatattcg
    18481 ttgaagacaa ggattcgcct tatgtgaatt taattgttgc ccgtgaaaat aaccaacatt
    18541 ctgaagccgt aaaagatttg gtgaaagcct accaaacaga agaggtgtat aacaaagcga
    18601 atgaagagtt taaaggggcg atgataaaag gctggtaatt gaagataaat aaggcataga
    18661 ttcctatgcc ttacttttta tgttacagac ctgctccggc tcttaatgct tcggctttgt
    18721 cagttttttc ccaaggaaaa tgtttacgac cgaagtgtcc gtaggcagcg gtttcacggt
    18781 agattggttt gattaaatct aacattttga ttaagccata cgggcgtaag tcaaagtttt
    18841 ggtagattaa tttcacaagt atttcgttgc tcactttacc tgtgccgaag gtttcgacca
    18901 taattgatgt tgggtcagcc accccgatag cataagaaag ttggatctca cagcgatcgg
    18961 ctaagcctgc ggcaacgata ttttttgcga cataacgagc agcataagca gcagagcgat
    19021 ccacttttga cgggtcttta ccagagaatg caccaccacc gtggcgagcc gcaccaccgt
    19081 aggtatctac aatgatttta cgcccggtta aaccacagtc acccattgga ccgccaatca
    19141 caaaacgacc ggttgggttg atgaaatatt tggtgttttg gctgagccat tcgcttggta
    19201 gtaccggttt gatgatctct tccatcaccc cttcaattaa ctctttttgc gaaatatgct
    19261 ctgcgtgttg tgtagaaagc actacggcat caatgccgat aattttattg ttctcataag
    19321 caaatgttaa ttggctttta gcgtcagggc gtaaccaatc gagtttgccc gatttacgca
    19381 cttttgactg ctgttccatt aagcggtgtg cgtaagtaat tggagccggc attaacacct
    19441 cggtttcatt ggtagcgtag ccaaacataa tcccttggtc gcccgcacct tgctctaacg
    19501 gatcggcacg gtcaacgccc tggttgatgt ccggagattg tttaccaatc gcatttaata
    19561 ccgcacaaga gtgagcatca aagcccatat cagagtgagt atagccgatg tcgcaaatca
    19621 cttggcgggt taagttttca atatccaccc acgcagaggt agtgatttct ccccctacta
    19681 atgccatacc ggttttcaca taagtttcac aagcaacgcg tgctttaggg tcttgtttta
    19741 aaatttcatc taataccgcg tctgaaattt ggtctgcgat tttatccgga tgcccttctg
    19801 aaaccgattc agaagtaaat aaattaattg ccatttgtat tcctctctat cttaaatatg
    19861 gattattaat agtagggacg ggtccagtgc ccgcccataa attatataaa atgtttggac
    19921 aggcacagga ccggtcccta taaaatttgt ttggaagtgt ttccgtctag acgtctataa
    19981 tatatttttt gaacgtttta ggcaaataga atttgtttat ttggctaaat atgcccttaa
    20041 accagccaac gcatttttgg catcttctac ccctaaatcg tacattgctt gtattttatt
    20101 tacatccgtt tcaaggcgac tgattttgac tgttctgctt ggacgaatca caaaaatctg
    20161 ttgtttttca ttgagttgaa taatctgctc aacggcttga ttatattccg catagcggtt
    20221 ttcccagcgt tgcactaatt tcggatattt tttataaaaa cgtttaaaca gccacatcga
    20281 gcttggtttc ttacggtatt caagtgggcg agtaagcacc acgataattt tgtcatatcc
    20341 catttcaata aatttctgca ccggaatact gtctgacaca ccaccgtcta aatatttttt
    20401 accctcaatt tcgactattt tggatacaat cggcattgag gaagtagctc gaaaggcttc
    20461 catttgctcg aacacattgt caattttgat gtattcgggc tcaccggttt cgacattggt
    20521 tacagtaacc caaaagtcca taccggaatc ctcaaaggct tgttggtcaa acggatccag
    20581 tttggaaggg agttcatagt aagcaaaatc ccgattaacg atattgccgg tggtaagcaa
    20641 gctgtgtaac cccatatacc gcttatcttt agcgtatttt ttgttgtatc gcaacgccct
    20701 acctttttgt tttgaaggca aattcacgcc aaataacgca ccggctgaaa caccgattgc
    20761 tccatctata tgaatatgtt catctaaaaa tacatctaac acgccggcag taaaaatacc
    20821 tcgcaaacca ccgccttcca gcactaatcc aactttcata tcattctccc tgtaatttgt
    20881 gtattataac ccgaattatc ttgctaggag aaatcacaat ggctgatgca gaatttatgg
    20941 atttcctgtt agatcaacta agcccgattt ccggtttgcg ttcgaaaaaa atgtttggtg
    21001 aatattgctt gttttttgat aataaaattg tcgctattat cagcaaagat tatcgcattt
    21061 ttgtcaaagc taatccgcaa accttgccgt tattcttagc tgaaaatgcc gaacaatttc
    21121 actattttgc taaaggaaaa gtgcaaaaaa tgcactactg gagcattccg gaattagcga
    21181 ttgaagaagc cgatgaactg gtcaaatgga ttcggctagg cttacaagcg gtgtaattta
    21241 gcgaaaattt tgtaaaaaaa cgctaaaata tgcccgcttg ttaggggggg ggacctaata
    21301 tttctatact ttaagatttt atatttatga accaaaaaaa attagtttct ttgattgtcg
    21361 ttattgtgtt ggcaatcatt tctcaaattt ttagcttttt tgataaaaaa gagccttcaa
    21421 aagcacaaga aaaatcgacc cagagtagtc agtctcatca agtttcaact tcatcactag
    21481 ggaactatga tgtgcagatg aaaaacgacc gtttgaaaca gcatattgta gataccgatt
    21541 attacacctt agcgttgtcg tggtcgccgg cgttttgcca aaaacaaaag cgaaataatc
    21601 acggtaaaat tccgtctcat ttggaatatc aatgtggtgg ctcagcggat tttggttggg
    21661 ttattcacgg cttatggccg caaagtggca aggcaagaag tgttgatgaa caccctcgtt
    21721 attgccaagg cgatttgccg atggtggcag agcagacgat taagcaatat ttacctgaat
    21781 cgccgggggc aactttgttg caaggcgaat gggaaaaaca cggtgcttgt gcctttaacc
    21841 aagcggatga ttacttcgcc aaacaaaaag agctatttaa tcagctcaaa ttaccggata
    21901 ccgaaatgtc taaattagca ctgtttaact ggatgcgagc caataaccct catttgcaaa
    21961 atgtctattt agggggtagc aaagatgagc tgtatatttg ctatgataaa gcatttcaac
    22021 caatggattg cccacgctaa tggcagatct tcgccaactg aaaatgcagg ttcagcgcca
    22081 attaaagcgt gatcttgaac gtgcaaatca ctattttaat accactttta cgccaccaag
    22141 tattagctat gcggtgcgtg gcgtaaaagc cggtgtggct tatcttgaac gcaacgaagt
    22201 acggtttaat cctgtgttat tgcaagaaaa tgaacaggca tttatccgcc aagttgtgcc
    22261 gcacgaactg gctcatatct tggtttatca acattttggg cgggtacaat ctcatggtaa
    22321 agagtggaaa atgatgatgg aaaccgtact gggtgtgccg gcggaaattt accattgttt
    22381 tgatacccaa agtgtgcaac agcaatttag ttaccaatgt gcctgccaga ctcaccagct
    22441 ttcgattcgc cgacacaatg ccgtgatgcg agataaaaaa agctatattt gccgtttatg
    22501 taaaactcaa ctccattttg tagaaaaaag ttaatgtgga gaaaagttaa gagaatgtta
    22561 cgatttagct agacattcct gtttaaacgc ctacaatttg ccgtagtttt tatttttaat
    22621 tttatttccg gagtatttat ggaaacaatt gtaattgtag gtggcggtgc aggcggtttg
    22681 gagcttgcaa cctatctagg caacaaatta gggcgtaaac aaaaggcaaa agtggtgctg
    22741 attgaccgca atgcaacgca tttatggaaa ccactgttgc acgaggtggc aaccggtact
    22801 attgatgagg gaactgatgc gttaagctat cgggctcacg ctaaaaatca tagttttgaa
    22861 tttcagcaag gtacgctggt ggcggtagat agagagaaga aaacggtttc actcgccccg
    22921 atttataatg atcaaaacca acttctcgtt aaagaacgcc atatcagtta tgacaaatta
    22981 gtgatcgcga tcggcagtaa atccaatgat tttggcacca aaggggttgc agaaaattgc
    23041 attttcttag atggctcaga gcaagcaaaa gatttccaaa aacgaatgat ggagctgttt
    23101 ttacgttttt cacatagtga aaataaagat gtaaaaattg cgattgtggg ggggggagca
    23161 acaggtattg agctttcagc ggagctttac cacgtggtga aaaatttaaa ttcttacggc
    23221 tttggtaaat taaaccgtgc cagcttgaaa gtcactttaa ttgaggcagg ccctcgtttg
    23281 attccggcat taccggagaa agtgtcggtt tctgctttcc acgaattgaa aaaagcgggt
    23341 gtttcggtgc gtttaggtac gatgattacc gaagctcgtc cagatgggct aatgacccgt
    23401 ttaggtgaga aaattgaggc ggatattatg gtttgggcgg ctggcgtgaa agcccctgaa
    23461 attacccgtg aatttggttt tgaaactaac cgcttgaacc aaattgagat taaagacacg
    23521 ctacaaacca ccgttgatga gtcagtgttt gtcattggcg attgtgcatc attaattcaa
    23581 gatggcaagc caattccacc cagagcacaa gcagcccacc aaatggcaac ccgatgtggt
    23641 aaaaatattg tggcattgat agaaggaaaa gagatgaagc cgtttcgatt taacgataaa
    23701 ggctcactgc tttccttctc aaaattcggc acggtgggta atttaatggg gaatttagtg
    23761 agcggtgata tgtttattga aggtaaaatt gcccgcttgg cttacctctc gctttatcga
    23821 atgcaccaag tggcattaca cggctgtgtc aaaaccggct tgattgtgtt ggtagggcaa
    23881 attaaccgtt tcttaagacc aacaatgaaa ctacattaaa caaaaatccg catcaaatga
    23941 tgcggatttt ttatggcaaa ataacaagcg gttattttct tgcctatttt tgcaaatact
    24001 cacgcctagt ttgctaattt aatttccgcc aaccatttat caattaagcg tttgccctct
    24061 tcgctggaac ctgctttttg gtaatcaatt tccacaaagt ctaacgcttc ggctttggtt
    24121 gattgtggag caacttcggc gttgatgttt gttggggttt ggtaaacacc gtgttttttc
    24181 caaggaattt cctgtgcttc ttttgaaagc acccaatcca taaagagttt ggcgttatct
    24241 aaattacggg catttttgat aatgctgaca ccgcctaacg catagcccac tttaccttcc
    24301 ggaataatgg cttcaatagg cgcacctttt tctttttcag tggcataact atgtacaaag
    24361 cctaccgtaa ccgcactttc accacgagca agattgctgg tgactagggt gcttttcaca
    24421 tattgcgaaa cgttattgtt gagttttttc agataatcaa aggttttctc ttcgccccat
    24481 aaggttgaaa gagtggtcat aaacgtataa gtcgtgccgg agctacgagg atcaggcagt
    24541 tgtacttcac cttttaagcg aggatctgat aaatcttccc attttttcgg tgcctcaatg
    24601 cctagtttgg cgagtttttc ggtattcacg cctaacccta atacaagcat ataaacgata
    24661 gaggtaaatt taccttgttc actttcaact aaggatttaa attgtggcag aatttcagct
    24721 tgttttggtg aacggtaggc ttccagtaag cctaattcgc ctgcttgaaa gtgaggttca
    24781 atcgtgccgc cataccaaat atctgcctga gggttcgatg cttccgcttt tacttttccg
    24841 aaaattgtac cggttccgcc gtgaatgaat ttagtttcga cattatattt gtgtgaaaat
    24901 tgcttggtca tttcttcaca aacattattt tgtaccgagc aataaacagt taaacgacct
    24961 tctgcttgtg ctgcttgagc tgataagaaa atgccagagg cgattaagat cgattttaat
    25021 gagattaatt tgagtacgtt catcactttc ctgaaaacat aaaataaaag gtagtgaagt
    25081 ctagcatttc aaagcgctgg ttgaaaatag ttaattgcaa tgaagtaggg caattgtgcc
    25141 tattacttta atatttacca actatttgca agttttagca aaaaataacc gcttgtagta
    25201 gctcttgcta ttttgtcaaa attcagaata ataaatgcct ttagtctaat gttaaatttt
    25261 agttatggaa aatagttgga aatatgcttt taaattaatc acgccgattt ttatgggcta
    25321 ttttgcggca ggggttgctt acggaatgct tgccaccaat gccggaatgc ctgcgtggtt
    25381 tacgattgta atgagtttta ccgtggtatc ggggacggca caatatgcag cgattccatt
    25441 ttttgtctcc ggtgttgggg cggtgtcggt ctttctcagt acgcttttaa tgagtctacg
    25501 ttttagtttt tacaccttaa atatgatgga gcataagccg atatccaaag cgaaaagtct
    25561 ggtcgctatt gcaggtttaa ctgatgaagg ctttgcggtg ttatcttcat taccgaaaga
    25621 gcaaaagcaa gcattattct ttaaaatcgc tgtgctatgt gtggcttatt ggacattttc
    25681 cacgattgtc ggtgtgttgt taggcgattc agtggcgaac tatattccgc atttggattt
    25741 tgctctgcct tgtttgtttg caattttagc ctatgagcaa tacaaaaacc aaaaacaatg
    25801 gaaaccgatt gtgattgcgt taatcggatt tttacttgct cgtcagatta ccgaaaccag
    25861 cgtgttattg gtggcaattt tagtagcgat tgtcattgtg gctttattac ctcaatcttc
    25921 ttcaatcaaa ctagagaaag gagtagaaaa tgagcacaaa tgatactttg ataatgtttg
    25981 cagcattagt gctcggctcg caaatttgtc gttttttgcc ggaattttta ccgaaaaagg
    26041 tgttatcttc gcccattttg caaaaattaa acaaaatgtt accgcttgtg attatgcttt
    26101 tattgctttt aacgagccta aactttccta aaaacgggga aggctttaac ttaatattgg
    26161 cacaaattct ggctttaata ggcgtattag gtagctatgt ttggcttaaa aatacctttt
    26221 taagcgtagc gttggggatt ttcggtgtga atgtattttt atccctgtta ggataaatac
    26281 caaaggtcat tttataggag cgaaacacct tcgctcaatc attaacagat gtggggcgaa
    26341 aaatttttcg ccccttattt atcacaagcg gtctttttct ttcaattttt tgcaaattaa
    26401 atcgctaaat caaacgcata gaaggcaact aaaataatcg caataattac tgtacctagg
    26461 tttaatttat tggcttcgcc tgaaattaag cgaccaatca caagggtggc gaaacctagc
    26521 ataatgcctg tcacaatgtt ggcggttaat acgatgaaca ccgcacagac taaacctgac
    26581 attgcaccta caaaatcgct gaaatctaat ttagagacat tacttagcat taataagccc
    26641 acatacatta atgccggtgc ggtggcatag cttggtacta agaatgcaag aggttggaag
    26701 aacagcataa ataagaaacc gataccaacc actacagcgg ttaaacctgt tttaccgcca
    26761 acggctgtac ctgctgccga ttcaatatac actgccgctg gtgctgtacc aaataagccc
    26821 gataaaattg atccgaatga gtcagaagtt agggctttat cgccattgat aatttgtccg
    26881 tctttatcta ataaaccggc ttgccctgca accgcacgga tagtacctgt tgcatcaaaa
    26941 atagcggtca ttactaacgc aaacactacc ggtaaaatgg cggtatttaa tgctcccata
    27001 atatcaagat ttaggaattg cgaattttca ccaaaactcg gcattttgaa aaagcctgtg
    27061 tattttacgt tagggtcaaa aattaaacct acgatggtaa tagcaataat gacccataaa
    27121 atactgcctt ttactttcag cttttctaac ccgataatgg cggctagacc gattaatgac
    27181 actaaaaccg gaaatgaagt gaagtcccct aatttaaccg gaatatccat accgctattg
    27241 accactaatt taacgttagt ggcggcaata atcagtaaga ataaaccaat accaattcca
    27301 gcaccgtggg caatgctgct tggcaaatta cgtaaaatcc aagtacgaat accggtagca
    27361 gaaatcaagg taaatactac gcccattaag aaaatcgccc cgagtgcaac aggaatagaa
    27421 acttgttgcc ctaatactaa gctaaaggca gtaaaagcag taagtgaaat cgcacaaccg
    27481 attgccattg gggcatttgc ccataaaccg attaagatag agccgagacc tgaaactaaa
    27541 caggtggcaa taaataccga ttcggcagga aagcctgctt ggcttagcat tcccggcaca
    27601 acgatgacgg aataaaccat ggctaaaaag gtagttaaac cggcgatgat ttcttgacga
    27661 gcgtttgaac cacgctcctc aaatttaaat aacgacataa gaacctcaaa agaagaaaat
    27721 gaaaggggaa attttaggat gcggaatttt acagaaattt aaaataatta gcaaacgttt
    27781 gcgtaaaaag tgaaagaaaa gcaggaataa atcctgcttt tgtttgatgg ttagtaatcg
    27841 atgaaagcgt cttgatctgc cccttccttt tcaactttag gctgaaccat atgttcacgt
    27901 tttagcccaa gttgtagtgc cacaccaatt gcaatgtaga tggatgaata agtaccgaaa
    27961 ccgataccga tcaataatgc aagtgagaaa ctatgaagcg ttggaccacc tagatagaat
    28021 aaggctagta ccacaaagag ggtggttact gatgtcatta aagtacgcga aagtgtttgg
    28081 ctcaaggaaa tatcgataat ttcaattgag ctggagcgac gaactttaga aaagttttca
    28141 cgtacacggt caaacaccac aattgagtca tttaacgagt aaccgacaac agataaaatc
    28201 gctgctacaa aggtcaagtc aatttcaatc tgtaagaaag agaagattcc gatcgtcact
    28261 aatacatcgt gaaataaagc cacaataccg cctaccgcta aacgccactc aaaacgtgtt
    28321 cccacgtaaa taagtagcat agcaagtgtt gccaaagtgg cataaatagc cccttgggtt
    28381 agctcttccc ccacgtttgg gccaacgaat tcaatgctct tgatagtcgc attcggatct
    28441 aatttttgat ggatcatctc catcacttta ttcccaacag acatatcacc ggcactggcg
    28501 gcaagtcgga tcattaaatc tttttgactg cctgtggttt gcactaaggc attgccgtag
    28561 ccgctatttt caagctccgt acgcagtttt gctaaatcag caggttgtga aaattgagtt
    28621 tcgattactg tcccgccggt aaaatctaac ccccagttaa agccttttgt cgcaatagta
    28681 aaaatgcata aagcagttac aatcagcgaa aaaatgaatc cgacatagcg gtatttcata
    28741 aaggggatta atttataagg cagtttaatt tctgctacat cttgttgtac attttcaata
    28801 gccatttttc caccttaaat ccaaagtttc ttcacgcgtt tgccaccgta aacccagttt
    28861 acaagcattc gagtacctgt aattgcggta aacatagaaa taattacccc taatgcaagc
    28921 gttaccgcaa agccttttac cggacctgta cctacaccat aaagcacaag agaagtcaaa
    28981 atagtggtga ggttggagtc aaaaatactt gagaatgcgc cattataacc ttcgtggatt
    29041 gcttgttgaa ttgggcgacc gttacgaatc tcttctttga tccgctcgta gattagtacg
    29101 ttggcatcaa ctgacatacc cacagcaagt acgataccgg caattcccgg catagtaagg
    29161 gttgcaccga ttaatgacat taaaccaatc gttaagatca tattcacaat caaggcaaga
    29221 gaggcaaata taccaaatac tttataaaag gctagacaga acaggatcgt taagcctaag
    29281 cctaaaatac tagcttccat accttgttta acattatctg ccccaagaga agcaccgata
    29341 gtacgctctt ccacaatcac gattggagca atcaacgcac ctgaacgtaa taataccgca
    29401 aggttttgag cttccgctgg tgaattaatc cctgtaatct ggaattgatt acctaaacgg
    29461 gtttgaatgg ttgcaacgtt aattacctct tggtgttttt ctaaaatgac tttaccgtta
    29521 gcatctttac gacctgaatc tttaaattcg gtataaagtg ttgccatcgg tttttggatt
    29581 gccattttag taatttcacc catcatctcg ccgccttcgg tatcgagtcg gatactcact
    29641 tgcggcaagc cacgctcatc agtgcctgag gttgcatcaa taatatgttc accccctaac
    29701 gaaggtttac ggcgtaatac aactggctcg ccatcacggg tgttttgcag tcctgaatca
    29761 gccggcacaa tgcctttcgc cgcagaggcc acattggctt cggtattgac taaccggaac
    29821 tcaagggttg cagttgcccc taaaagctct ttggcacgag cggtatcttg cacacccggt
    29881 aattcaacta cgatacgatc tgcaccttga cgctgaatgg tcggctcaga aacgcccaat
    29941 tcctcaacac gtttacgcaa aatagaaagg ttttgttcga ttgccatcgt gcgagattca
    30001 gaaagagctt gtgctgatgg cgttaaggtg actttattat catttaccaa aatatcaagc
    30061 gttgggtgag agagacgcac taaacgcact gctttttcgg cggtatcgtt atcggcaaat
    30121 tcaacctcag ttgcaaaatt ttcgcctttt ttgaccgctt gatattgcaa tttttcttta
    30181 cggaaatcac tacgcaggct gtcttgcaaa gtgtcttgtt gttttgcaag cgccgtgttc
    30241 atatccactt ccattaagaa acgaacaccg ccaagcaagt ccaagcctcg cttcatcggg
    30301 ctaccgccaa tgtcagacaa ccactgtggc gttgctggtg caaggtttaa ggcaacagag
    30361 tagttattcc ccaatgcttc tgagattttt tctttggcag gcaattgctg ttcgctgctt
    30421 tcgagacgaa ccaaaatcga gccattttct aacacggcag atttcggctg aatattcatt
    30481 gctgaaagtg tggattgcac ttgagacagt gtctcaggtg tggcttgttg cccacgagta
    30541 ccggaaattt gtaccgaagg atcatcgcca tataaatttg gaagggcata taaagcacca
    30601 atggcgatca cgaagatcac cattaaattc ttccatagag ggaaacggtt taacacaata
    30661 actccccgaa tgttaaagtt ggataagagg gttgattaaa gtgattttaa tgaacctttt
    30721 ggtaacaccg caacaacgaa atcacgtttg atggtcactt cagttgtgtc atttaatgca
    30781 atcacgatgt tatcgttatc agcggtcact ttggtaattt taccgattaa accaccgctg
    30841 gttaatactt catcgccttt tgtcaagctt gccagtaaat cacgttgttg tttttggcgt
    30901 tttgcctgag gacgataaat cataaaatag aaaattgcac cgaaaataat caggataaag
    30961 atcatttcca ttccgccacc ttgttgcata aaaactcctt aaatgtttga gtggtataaa
    31021 aataagtgtt ataaaaaacg cctgttaaaa taccataaat tcaatgaatt aacgagtaga
    31081 aaaattcatc gaatgctttt cttttaaaca aaaatttgag tagaatcagc acttttagtt
    31141 taggattagg ttcttggcgt gttcttgcgc tgacacaata ggagaaaaaa tgaaaaaatt
    31201 attcgctcaa gcggttattt ttggggcttt ttttgcaagt tccgcttttg ctcacaatgt
    31261 gcaattaaat caagcattac ctgctgtttc ggttgcaaaa gacggggaat tggcagtggc
    31321 aggtggaaag gttagctata aaaattggca ttcatcatct ctggcaggta aagtccgtgt
    31381 tattcatcat tttgccggta gaagttcggt gaaagaaaaa aatgaagatt tgatgacagc
    31441 aattaaaaat gccggttttg atcgctcgaa ataccaaacg gtgacgattg taaatgctga
    31501 tgatgcgatt gtcggcacag gggtatttgt gaaaaatagt gtggaaaacg gcaaacttga
    31561 caatcctcac agccaagtag tgttagacca gcaaggcagt gtgaaaaaag cgtggggctt
    31621 aaaagagaaa gagagcttta ttgcagtgct ggataaatcg ggtaaggtac aatttacctc
    31681 tgagggcaaa ctctctgcaa aacagattca agaagtgatt gggttggtga aaacattaac
    31741 gcaataacca gtgtttttat gggcggattt tgtatccgcc catcattcta gataataaat
    31801 cgataactta tcgtgtgatg atactcttct cctgcttttg ttatcccgcc aaattggagt
    31861 aattcaggct ggtttagtga atttgggaaa aactcaggct ctaatgctac accagcgtaa
    31921 tcttcatatt cgcctttagt caaattaggt tgtcctttta gccagttgcc ggtgtaaagt
    31981 tgtaatgctg gcatggaggt gcggagttcc atttttaagt cttccacggc taaacaagcg
    32041 gtcggatttt cactattttt tgcaagatga aaggagtgat cgtaaccttt taccgctttt
    32101 tggtcgtcat cagccaataa atcttgccca atttttttag cattgcggaa gtcaaaactg
    32161 gtactctcca cttttttcag tggagcatta ggaataccgc tggcatcaac cggtaagtat
    32221 ccgtctgcat taattatcag ctcgtgatct aaaatcgtct ctgaaccttg caaattaaaa
    32281 taggcgtgat tagttaagca aagcggtgta tcttggttag caacggcatc aaagctgatt
    32341 tgaagctcat tctctgttaa gcgatactcc acaaaagctt tcacttcgcc gccaaatcct
    32401 tcctcgccat ctgcaaaaaa ataactaaat ttgaccgctt gttcgctttg gctttcaagt
    32461 tgccacacta ttttatctgc cccaagctcg ccaccgtgga gattatgttc accgttattt
    32521 ttagcgagct ggtaggtttt gccgtttaag cgatattcgg cattggcaat gcggttagcg
    32581 taacgcccaa tggtcgctcc aaagaaagcg gtctgttttt gccaattttt tgcagacgtg
    32641 gtgactaata cttcccgttc ctcgttcggc attttgacaa tgcacgaaag ccaagaagcc
    32701 ccaacatcag aaagggtaat gcgtaaaaac gcattttcaa gggtgaataa tttcatcggt
    32761 tgaccttaat tacctagcac ggcatagccg tactaggtta agcataattc agccctgcta
    32821 gggctgaggt tatttatttt agagtagcgg agctacttcc ttatgcttaa cccggtacgc
    32881 tttagcgtgc cgggcattct cgcaccccat cggaggcagt acaaacgtgg aaggtttctt
    32941 taatgccggt ttgcttttcg taattgttag caacggcttg gcggagatct tccactttgt
    33001 catttggcac taggcacacg acacaaccgc caaagccgcc gccagtcatt ctggctccgc
    33061 cgtttttacc gatagcttgt tgggcgattt cggctaagca atccacttca gggcaggtga
    33121 tttcaaaatc atcacgcatt gagtcgtgag attgagccat caactccccg agtttgacca
    33181 tatcattcgc ttttaaggcc tctactgctt ccagaactcg ttgattttcg ctgatgatat
    33241 gttttgctcg tttatacgcc agctcattct cttcactaag ttctgaggct cgttcaataa
    33301 attgttccgc tgtgacatca cgcaattttg ctttgccgaa gaagtgggcg gcaaattcgc
    33361 actgttcacg gcgactgttg tattcgccgg taaccaagtc gtgttttacg ttggagttaa
    33421 taatcgcaat cgaatagcct tgtggcacag gggttggggt gatttctaaa ctacggcagt
    33481 cgatcatcac taaatgatct tgttgcccga gagcggaggt gagctgatcc atattgccgc
    33541 agttgcagcc gacaaattta ttctcagcct cttgcccgat taatgcgatt tgcggtaaag
    33601 aaagcggtaa atcgccgagt aattgagcgg ttttaccaat cgacacttcc aatgcggcgg
    33661 aagaacttaa acctgatgac atcggcacat cgctggtaat ggctaaatct gctccttgtt
    33721 tgaattcggg gtgtttggct tgaataaatt tcaccacgcc acgcacataa ttcgcccatt
    33781 tttgctcgct tggctcaatc gcctggctta aatcaaattc atcttgttgg ttgagatcaa
    33841 tggcgaacac ccgccatttg ttgtcactac gtttggcaaa gctaaccgct gtgccgtaat
    33901 tgatggcaca aggcattaca aacccatcgt tgtaatcagt atgttcgccg ataatattca
    33961 ctctgcccgg ggcaaatacc gtgcgttctg ctttataacc aaaatgttgt tcaaattgtt
    34021 gcaaagcgat ttcttgtggt ttcatttcaa ttccttattt atctttatag tgtttggtat
    34081 cacttactgc atttaaacgt tcggcagctt gttccggggt taaatcacgt tggctttctg
    34141 ccatcatttc ataaccgacc ataaatttac gcactgttgc cgaacgcaag agcggcggat
    34201 agaagtgagc gtgtaattgc cagtgagcat tttccttgcc gttaaacgga gcgaagtgaa
    34261 agcccattga ataaggaaag ctgatgttaa acagattgtc gtaacgggtg gtgagctttt
    34321 tcaatgcaag ggctaaatcc gctttttccg cttcgtttaa atcggtaatg gatttgaact
    34381 gcttggcttt cggcaacagc aaggtttcaa acggccaagc cgcccagtaa ggcacaaccg
    34441 caatccaatc ttcggtttct gccacaattc gctcttgttt gtctaattca cgttgtgcgt
    34501 agtcaagcaa cagtggcgag ccatattgag caaaatattt cgcttggcat tcgtcttcaa
    34561 tcgcaatttc attaggtaga aaattacttg cccaaatttg cccgtgtggg tgagggttag
    34621 aacaccccat cattgagcct ttgttctcaa aaatttgcac ccactgataa tgctctttca
    34681 gctcattcgc ttgctcttgc caaactgtta ccacatcagt aatttcctcg atggaaagtt
    34741 gcggtaaggt tttactatga tcaggcgaaa aacagatcac acggctttcg ccttgtgtat
    34801 gagaaatctg aaacagcgga tcatcattcg gtattggtgc cggtgtgtct ggtagcaggg
    34861 cagagaagtc gtttttaaac acaaacggct tggtgtaatt cgggttttgt tcgccggtaa
    34921 tccgcttatt gccggggcag aggtaacaac ttgggtcgta gctcggtttt tcatcttgca
    34981 cgatttcttc ttgttgccct tgccacgggc gttttgcccg atgcggagag actaaaatcc
    35041 attgattttt taatggatta aaacgacgat gtgggtgatc gttgaggaca aattcgctca
    35101 tataaaactc ctcgaaatta gttatgtaaa gagtatagcg aaagtcagac aaaatgactg
    35161 tgacatagct cacaaaataa tgatgtcaag cggtcaaatt tcagaaaaat tttgcaagtt
    35221 ttcctccatt ttgcgattta aggtagctta cgtggaattg aatgtggctt ttggtagaat
    35281 agatgaatat gcaagatatt aagacaaaaa tagatggaaa gactgaataa atttgatgct
    35341 tggttaatga atcataaacc taatgctagg ttaagcggag cgagtcgttt gttgacagag
    35401 ttttggttct ttgggttaaa agaagctaga gcctgtttat ttgcgggatt attttttatt
    35461 gcgatgtttt cggtaccaaa aacgggatta tggggcttac ctcgttatga tattttgctg
    35521 atttttgcca tagtggtgca aattgcaatg gtgaaactgg ggctggaaac gtgggacgag
    35581 ctaaaagcaa taagcctatt tcatttggtt ggttttgtgt tagaagtctt taaaacatcg
    35641 agtaatattc aatcttgggc atatccggat tttgcctata ctaaattgtt caatgtgcca
    35701 ttatttactg gttttatgta tgcagcagtt ggttcttaca ttatccaagc gtggcggttg
    35761 tttgatttga aaattaaaag ccacctgccc tattggttag ccactttaac ggcactgatg
    35821 atttacctga atttctttac gcatcattac attggggatt accgttggta tattgccgct
    35881 tttgcattag ggctgtatgc acgtactttt gtatttttca ccccttatga cattacacga
    35941 aaaatgccac tgctgctttc tttcttcctg ataggttttt tcatttggtt ggcggaaaat
    36001 atcggtacgt ttgccggaat ttggcgctac ccgaatcagt ttggggcttg gtctatggtg
    36061 catatgagca agtggagtgc ttgggcgtta ttggtgatga tgacttttac catcattgtg
    36121 catttaaagc atatcaagca aacagtcaga gtctcgagcg attaacaagc tgtgggtttt
    36181 ggcgaaaatt ttactcatca gttattttca gtggaattag gggcaaataa taatttgccc
    36241 ctatatcaaa ttatggattt tccccttcca catcaataat catcacttcc gactgtgagc
    36301 ctaaccgcat cggcacgccc cagaatccgt agccggaggt gacaaaataa tgcccgaagc
    36361 cgattttttc atagccgtaa tgtaatcgat agatcagttt ggtaataata cttgcaggga
    36421 acacttgccc tttgtgagcg tgtcctgaaa cttgaatatc aatcggcaat ttagcatgtt
    36481 gctcaatttc agtcgggcgg tggtcaagca aaattaccgg tagtttagtg ttcacgtttt
    36541 gtaaaagctg ttcggcagaa ggtcgatttt tgactaaatc atcattacgc ccaataaggg
    36601 taaattttcc gttaatttcg gccgtttgat cccataaaac agtaataccg gcgtcggtaa
    36661 tttcttttgc aatcgtttct tgagccccaa aaaagtcgtg attgccaagg gtagcataca
    36721 cgccaagagg agcttttaat ttggctaaat gaggctgcat tttatcggca acataaactt
    36781 cggtattgtc gtccataata tcgcccggca ataaaatcag atcgactttt tgctggttga
    36841 aaatctctgc cagttggtca agttgcttgg ttccgaacag ttttcctaaa tgcagatcgc
    36901 ttgccatacc aatgcgaagc ggtttctcta atggtttatc caatttcacc gaataatgta
    36961 ctactgttgg ggtataagcg ttgtaatagc caagcccaag taagccaaag aatgcaaatg
    37021 ggtaggcgat tttcagccag cgattgacgg tagtattgcc gttgaatatt ttgtaaatac
    37081 aagcggtgaa aaaactgata aaaaatgcaa aaagtaacaa taccaatatg aatgccatta
    37141 ttctaaatag cgcaaaagta cgagtaagat gcaaaatcac taatccgttt gcgactaaga
    37201 aagtgagaat accaactgtt ttacggtttt tacttgataa attaaataac cagctgacag
    37261 tctttgcaaa gttgaataaa aagagttgta acaccgcaat cacaagggcg gtggtaatgt
    37321 agtaacgata ttccatattt ttccttcaat aaattggcta aacccagccg atttgtctta
    37381 ataaaaataa gccgatgctg gcactaaaca ttgagccgag agtcgtaatg ccgatcagat
    37441 ttgcggctgc ctcgccgtct ccgccatagt tgcgtgtcat tgcgtaggtg gctgaagcaa
    37501 cgggagcaga agcagccaca aagacaatgc ctagttccat cggcggaagt tgaaacacaa
    37561 atttcccgag tagtagcaag aaaattggag caaaaatcag ccgaatcgag gcagaaaaca
    37621 gcacaatttt attgatggtg ctttccactc cttgattaaa ttgtttcaac tgtttgaaat
    37681 taatgcttgc tccggtgcag ataagtgcta atggtagtgt caggctcgcc attaatttac
    37741 cagcagactc aagcggggtt ggaatttggt ggcttaattc aaaatagtta aaagttaagc
    37801 ctgcaatgac ggctagaatc agcggatttc tcaatatcga caatattaat ctgccaaaat
    37861 tcactttttt ctcgcttaac gatgaagtga gggtaatcac tgcaagcaca ttaaaggtaa
    37921 tcaccaagca cgaaatataa actgaagcgg cagcgagagc tttatcgcca taagcattga
    37981 gaattaaggc aatgcctaaa atcgccgcat tggtacggaa agtgccttga gtgaaaatac
    38041 aacgataacg gcggttttca atatgtcgag ccgcccacca ttccgcccat aaatagatca
    38101 aaatcgaacc gccgactccg gtcgagatca ggttgatttg gctggagaaa tctaacgggc
    38161 tttttagcat attcaagaaa atcatcggtg gcagggtaaa attaaatacc acctttgatg
    38221 ccatattgca aaaggtatcg tcaataaatt ttcgtctgcg tggaaaaata ccgaacagca
    38281 ttaacaaaat ggttggtaag gtaacgccaa tgctaaattg gatagagtcg aaaagcataa
    38341 tgtttgcctt aaatgatggc acgagtgtct tttgcttgta ccgtagatta tcaataaagt
    38401 accagcgtgg acgctggtac tatcatcaat ggaaatgaaa ttacaatcct gcctttaagc
    38461 ttgcttcgac aaatttatcc aaatcaccgt ccagcacttg ttgggtggtg cgatgttcca
    38521 caccggtacg gtggtcttta atccgtgaat cgtctagcac ataagagcgg atctggctgc
    38581 cccagccgat gtcggatttg ttgtcttcca tcgcctgttt ttccgcattt ttcttgctca
    38641 tttccagctc atatagcttc gctttaagct gtttcatcgc ctgatcttta ttttgatgtt
    38701 gtgaacgacc gttctggcac tgcaccacaa tgccgctcgg tatatgggta attcgcaccg
    38761 ccgattcggt tttattgacg tgctgaccac ccgcccctga ggcacgatac acatcaatcc
    38821 gcaaatccgc agggttgatt tcaatatcaa tatcgtcatc gacttccgga taaacgaaag
    38881 ccgccgagaa cgaggtatga cgaccgttat tggcatcaaa cgggctttta cgcaccaagc
    38941 ggtgaatacc cgtttcggtt ctgaaccagc cgtaagcata gtcgccggaa attttcacgg
    39001 tggcggattt aatccctgcc acatcaccgt ctgaggcttc cattagttcg gctttaaacc
    39061 ctttgctctc tgcccaacgc aaatacatac gcagtaacat ttctgtccag tcctgagctt
    39121 ccgttccacc cgaaccggct tgcaaatcca aatagcaatc ggcactgtcg tgtgggccgc
    39181 tgaacatccg cttaaattct aaatcggcaa gttttttctc taattcgtct gcttccactt
    39241 gggcttcatt gaaggtatcc tgatcttctg cttccaccgc cagctcaatc aacccttcaa
    39301 catcttcaat cccttgctct aaggctttaa tcgtattgac gatctgctcc aacattgccc
    39361 gctctttacc aagcgcttgt gctttttccg gcttgttcca tacatcgggt tgttccagct
    39421 cggcattgac ctcttctaag cgttcgactt tatgctcaaa gtcaaagata ccccctgatc
    39481 accgcggtgc gctcgcttaa atcagttagt tggtttttaa ttgggtttaa ttcaaacatt
    39541 gtcgttcctg tttttgctta ttttaaaaag atgaattata gctgaagtta agcaagcggt
    39601 cgaattttgc aagaaatgga gcaatgatcg tttctagtaa tgagatttgg ttcataaaag
    39661 ttgcaactgt ttctgctatt tggctttgat agctaaaaat ctttaaaaaa acaagcggtc
    39721 gttttacccc attttttgca aaacgaccgt agcttcttgc tataatcgct gaaaaaatgc
    39781 tgcaaggaga ttttatggca aagcgcccaa gtgatattga tgcaacccta ttgcaactgg
    39841 aaatcctacg ccgtatcccc aaattacccg ctaaaattga tgctaaaagt ttgcaccaac
    39901 agctattaga tgccggcttt gaacgggata ttcgcactgt tcagcgttcg ctcaaaatgt
    39961 tatgcgagca ttttgatatt gaatgcgatg agcggagcaa accctttggt tatagctgga
    40021 aaatccgctc agaggggctg gcattgccga ttctcaacga acaacaatca ttactgctaa
    40081 aacttgccga gcaacagctg aaatatctgt tacccgcaaa tttaatggca tcaatgaaac
    40141 ccttttttga gcaggcagac agaatggttt ccggggcgaa agacaagccc gaataccaat
    40201 ggctaaataa agtttgctcc acgccaacca gcctaccgct gatccctgca aaaattaaag
    40261 aagagatttt taattccgta agccaagcct tatttcaaaa taagttgtta aagatcgaat
    40321 atcagaacca gcacggcaaa aaacaccaag cgacaattat gccgttggcg atttcacaac
    40381 aaggtgcgag catttatttg gtctgccgtt acgaagggtt tgacgacaac cgcctgttgg
    40441 ctcttcaccg cattcgtaaa gcggagattt ctacttttag ttttgaacgc ccgaaagatt
    40501 ttaatttgca agcctaccaa gatgccggac acctcggttt tggcaatggc gaaaaagcta
    40561 gccttacctt ttcgattagc agagacgccg gtttccattt aaccgaaaca ccgcttgcca
    40621 aagatcaaaa aattctcgag gagagtgaaa ctcactaccg tattcaagcc atagtcgctg
    40681 ataatgatat gctaacctgg tagctacgca aatttggcga agatatttgg gatatcgaga
    40741 aagaagcgct aaaataagct aaacaagcgg tcggttttgt gggaattttt gctaaatagt
    40801 atcgaccgct cctccctaaa cagaccttta tcataaatac aactctttca atcagatatt
    40861 cttactgtct attgatgaac gattcgaatt tttctagtgg ttgaaattta aactaatttt
    40921 cttgcttttt ggcatttttc agacttttaa ttctctccat tagcctgttt ttttacgctc
    40981 tttttcataa acaggaataa ccaatgcctt ttcaacttac tttctgccaa caagccggca
    41041 atcagcacca gaaaaatcaa gatgcactgt ttaacggcaa agcggtgtac caatggcaac
    41101 ttaaaaatgc cgagagttat ctgctggata acgacaaagt aatttttggg gttgcggacg
    41161 gcgtttccag ccaccctcga aatcatcttg cctcacatta tttaatggcg ttactcagcc
    41221 aatgccaatc ccttgatagc caatggttgc gacaggctca cggcgatttt tgcgaaaaat
    41281 tagcgaaaga ttattttggt gcttcttgca cttttgttgc ttgtgaatta caccataacg
    41341 gcagagggcg tatggttaat gtgggcgaca gtcgagccta taaaattacg gcaaacgggg
    41401 agtggcaaca actgagtttt gatcacacca tactggctga aatgaaacag aaaggcttgg
    41461 ttaaggaagg gagcaactat gcctcaatgt ataacggctt aaccgattgt attgttgccg
    41521 attttgacgc cgatgatttc cgcattcata tagccgaatt tcaactggaa aaaggcgaga
    41581 gcattttgct ctgttctgac ggtttgcacg aacaactcgc cccagaagct attcaggcga
    41641 tttaggacgg atacgaaagc ccgtctcatc gtctgcaaat ttgcagaaaa atggtaaaaa
    41701 tgcaccgctt gtatgacgat ttttctgcgg tgatttgtga aattgtgtaa ttaaaacgac
    41761 attatttgtc gcattggtgc ttaaaatccg cataaaacag aggagaaaaa aatgaaaaac
    41821 gatttccatt atgccgctga attaatccgc aatgcagacg gcattttaat taccgcaggg
    41881 gctggaatgt cggtggacag tggcttgccc gatttccgta gcgtgggagg gttatggaat
    41941 tcctacccac cgctcaaaaa atttaatttg caatttatgc agattgccac accgcttgcc
    42001 tatcaggaac gccctga
//
LOCUS       DANLXK010000005        41785 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.005, whole genome shotgun sequence.
ACCESSION   DANLXK010000005 DANLXK010000000
VERSION     DANLXK010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 41785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41785
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..434
                     /locus_tag="PXD88_000197"
     CDS             <1..434
                     /locus_tag="PXD88_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL6279822.1"
                     /translation="EQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGAI
                     QKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRKM
                     RNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            427..720
                     /locus_tag="PXD88_000198"
     CDS             427..720
                     /locus_tag="PXD88_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL6279823.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            769..1803
                     /locus_tag="PXD88_000199"
     CDS             769..1803
                     /locus_tag="PXD88_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL6279824.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            1816..2061
                     /gene="nqrM"
                     /locus_tag="PXD88_000200"
     CDS             1816..2061
                     /gene="nqrM"
                     /locus_tag="PXD88_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL6279825.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            2063..2479
                     /locus_tag="PXD88_000201"
     CDS             2063..2479
                     /locus_tag="PXD88_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL6279826.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            2461..2772
                     /locus_tag="PXD88_000202"
     CDS             2461..2772
                     /locus_tag="PXD88_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL6279827.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            2883..4046
                     /gene="mnmA"
                     /locus_tag="PXD88_000203"
     CDS             2883..4046
                     /gene="mnmA"
                     /locus_tag="PXD88_000203"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL6279828.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            4163..5542
                     /gene="argH"
                     /locus_tag="PXD88_000204"
     CDS             4163..5542
                     /gene="argH"
                     /locus_tag="PXD88_000204"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL6279829.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            5710..6708
                     /locus_tag="PXD88_000205"
     CDS             5710..6708
                     /locus_tag="PXD88_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL6279830.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            6809..7921
                     /gene="ispG"
                     /locus_tag="PXD88_000206"
                     /gene_synonym="gcpE"
     CDS             6809..7921
                     /gene="ispG"
                     /locus_tag="PXD88_000206"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL6279831.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            7927..9198
                     /gene="hisS"
                     /locus_tag="PXD88_000207"
     CDS             7927..9198
                     /gene="hisS"
                     /locus_tag="PXD88_000207"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL6279832.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            9208..9828
                     /locus_tag="PXD88_000208"
     CDS             9208..9828
                     /locus_tag="PXD88_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL6279833.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(9891..10994)
                     /gene="dnaN"
                     /locus_tag="PXD88_000209"
     CDS             complement(9891..10994)
                     /gene="dnaN"
                     /locus_tag="PXD88_000209"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL6279834.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(11013..12362)
                     /gene="dnaA"
                     /locus_tag="PXD88_000210"
     CDS             complement(11013..12362)
                     /gene="dnaA"
                     /locus_tag="PXD88_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL6279835.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            complement(12549..14396)
                     /locus_tag="PXD88_000211"
     CDS             complement(12549..14396)
                     /locus_tag="PXD88_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6279836.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            complement(14465..14974)
                     /gene="luxS"
                     /locus_tag="PXD88_000212"
     CDS             complement(14465..14974)
                     /gene="luxS"
                     /locus_tag="PXD88_000212"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL6279837.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            complement(14992..17658)
                     /locus_tag="PXD88_000213"
     CDS             complement(14992..17658)
                     /locus_tag="PXD88_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL6279838.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            complement(17741..18181)
                     /gene="fur"
                     /locus_tag="PXD88_000214"
     CDS             complement(17741..18181)
                     /gene="fur"
                     /locus_tag="PXD88_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL6279839.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            complement(18217..18741)
                     /gene="fldA"
                     /locus_tag="PXD88_000215"
     CDS             complement(18217..18741)
                     /gene="fldA"
                     /locus_tag="PXD88_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL6279840.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            complement(18747..19022)
                     /gene="ybfE"
                     /locus_tag="PXD88_000216"
     CDS             complement(18747..19022)
                     /gene="ybfE"
                     /locus_tag="PXD88_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL6279841.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            19263..20249
                     /locus_tag="PXD88_000217"
     CDS             19263..20249
                     /locus_tag="PXD88_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL6279842.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            20346..21641
                     /locus_tag="PXD88_000218"
     CDS             20346..21641
                     /locus_tag="PXD88_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL6279843.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            21761..22129
                     /locus_tag="PXD88_000219"
     CDS             21761..22129
                     /locus_tag="PXD88_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL6279844.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            22129..23322
                     /locus_tag="PXD88_000220"
     CDS             22129..23322
                     /locus_tag="PXD88_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL6279845.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVIATG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(23393..23611)
                     /gene="infA"
                     /locus_tag="PXD88_000221"
     CDS             complement(23393..23611)
                     /gene="infA"
                     /locus_tag="PXD88_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL6279846.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(23721..24380)
                     /locus_tag="PXD88_000222"
     CDS             complement(23721..24380)
                     /locus_tag="PXD88_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL6279847.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            24466..25329
                     /gene="serB"
                     /locus_tag="PXD88_000223"
     CDS             24466..25329
                     /gene="serB"
                     /locus_tag="PXD88_000223"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL6279848.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            25345..25836
                     /locus_tag="PXD88_000224"
     CDS             25345..25836
                     /locus_tag="PXD88_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL6279849.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            25921..26097
                     /locus_tag="PXD88_000225"
     CDS             25921..26097
                     /locus_tag="PXD88_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL6279850.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(26145..26441)
                     /locus_tag="PXD88_000226"
     CDS             complement(26145..26441)
                     /locus_tag="PXD88_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279851.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(26518..27486)
                     /gene="mdh"
                     /locus_tag="PXD88_000227"
     CDS             complement(26518..27486)
                     /gene="mdh"
                     /locus_tag="PXD88_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL6279852.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            27682..28143
                     /gene="argR"
                     /locus_tag="PXD88_000228"
     CDS             27682..28143
                     /gene="argR"
                     /locus_tag="PXD88_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL6279853.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            28193..29089
                     /locus_tag="PXD88_000229"
     CDS             28193..29089
                     /locus_tag="PXD88_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL6279854.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            29134..31332
                     /gene="uvrD"
                     /locus_tag="PXD88_000230"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             29134..31332
                     /gene="uvrD"
                     /locus_tag="PXD88_000230"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL6279855.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
     gene            complement(31479..31553)
                     /locus_tag="PXD88_000231"
     tRNA            complement(31479..31553)
                     /locus_tag="PXD88_000231"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31519..31521),aa:Gln,seq:ttg)
     gene            complement(31608..31682)
                     /locus_tag="PXD88_000232"
     tRNA            complement(31608..31682)
                     /locus_tag="PXD88_000232"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31648..31650),aa:Gln,seq:ttg)
     gene            complement(31708..31792)
                     /locus_tag="PXD88_000233"
     tRNA            complement(31708..31792)
                     /locus_tag="PXD88_000233"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31756..31758),aa:Leu,seq:tag)
     gene            complement(31795..31871)
                     /locus_tag="PXD88_000234"
     tRNA            complement(31795..31871)
                     /locus_tag="PXD88_000234"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31835..31837),aa:Met,seq:cat)
     gene            complement(32038..32862)
                     /gene="aroE"
                     /locus_tag="PXD88_000235"
     CDS             complement(32038..32862)
                     /gene="aroE"
                     /locus_tag="PXD88_000235"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL6279856.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(32869..33423)
                     /locus_tag="PXD88_000236"
     CDS             complement(32869..33423)
                     /locus_tag="PXD88_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL6279857.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(33416..33952)
                     /locus_tag="PXD88_000237"
     CDS             complement(33416..33952)
                     /locus_tag="PXD88_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL6279858.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(33962..34273)
                     /locus_tag="PXD88_000238"
     CDS             complement(33962..34273)
                     /locus_tag="PXD88_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL6279859.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(34266..34742)
                     /gene="recX"
                     /locus_tag="PXD88_000239"
     CDS             complement(34266..34742)
                     /gene="recX"
                     /locus_tag="PXD88_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL6279860.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(34801..35907)
                     /gene="recA"
                     /locus_tag="PXD88_000240"
     CDS             complement(34801..35907)
                     /gene="recA"
                     /locus_tag="PXD88_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL6279861.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(36008..36628)
                     /locus_tag="PXD88_000241"
     CDS             complement(36008..36628)
                     /locus_tag="PXD88_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL6279862.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(36606..37580)
                     /locus_tag="PXD88_000242"
     CDS             complement(36606..37580)
                     /locus_tag="PXD88_000242"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL6279863.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            37690..39297
                     /gene="rmuC"
                     /locus_tag="PXD88_000243"
     CDS             37690..39297
                     /gene="rmuC"
                     /locus_tag="PXD88_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL6279864.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            39360..39944
                     /locus_tag="PXD88_000244"
     CDS             39360..39944
                     /locus_tag="PXD88_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL6279865.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            40041..41123
                     /gene="prfA"
                     /locus_tag="PXD88_000245"
     CDS             40041..41123
                     /gene="prfA"
                     /locus_tag="PXD88_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL6279866.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            41235..>41785
                     /locus_tag="PXD88_000246"
     CDS             41235..>41785
                     /locus_tag="PXD88_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279867.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILSDQKNTENSKIILDILK
                     FGHSRMAIQQNMGDKVYSGGCVTA"
BASE COUNT        12429 a         8227 c         8865 g        12264 t
ORIGIN      
        1 tggaacaact ggatattacg gtacttgaaa atgccttcaa ttcccttgag aaaacgattg
       61 tcagccttga gaatcaagcg tggtttaacc ggcaagaagc aattattcaa gacactttga
      121 ttgcaggagc aatccaaaaa tttgaatttg tttacgaatt gtcgataaaa atgctcaagc
      181 gtcagctcaa aaacattgag tcaaatgaca ctgatattga tagcaccgag ttccgtgata
      241 ttttgcgaat ggctgctcaa tatgggctga ttgaatcacc ggaagtttgg ctggattatc
      301 gcaaaatgcg aaatattact tcgcatactt atgatcaaaa taaagcacag caggtttata
      361 acggaatttc aaactttctg gaaagtacgt attttttagt taaacagctc caaaaacgca
      421 atagctatga ttgatttaac tgagtcacaa cgccaacagg tgttggatat tttcaaaaaa
      481 tacttgcctg atacacccgt ttgggttttt ggctctcgca ttaaaggcac agccaaagcc
      541 tattcggatc ttgatttagc attaatcacc aaacaaccgc tcacaattcg gcaacaaaca
      601 gagttagagc ttgcgtttac ggattctgac ctacctttca cagtagatct gattgactgg
      661 gcaagttgca acgaatcgtt taaacaaatt attttacagc gatatgaagt gcttatttaa
      721 tcgctaaata tgctataatt tccccaattt ttaacttttg tgacaccaat gaaaaaattt
      781 tttcttcttt taattgcttt ttttacttta agtgcttgtg aaaaagcccc tgagcaaatt
      841 acgctgtcag gcaaaaccat gggaacgact tacaccgtaa aatatattga taatggtgaa
      901 gtggagaatt tgatttcgcc tgaaaaaatg aaaaatgagc tggatggctt attgattgag
      961 gtgaataatc agatgtccac ctaccaacaa gattcggaaa ttagccgttt taatcaagca
     1021 aagcaggcaa atcaagcggt cgaaatttcg caggattttg caaaagtggt acaagaggca
     1081 atccgtttaa ataaagtaac cgaaggggct ttagatgtaa ccgttggtcc attggtgaac
     1141 ttgtggggct tcgggccgga taaacgctta aataaagtgc cgtctgatga acaaattgca
     1201 gagcgttctg cttatgtcgg cattgataaa attttgcttg aaatgagtag taaacccaag
     1261 ctcaccaagt cagcagctaa tctttatcta gatttatcgt ctattgcaaa gggtttcggt
     1321 gtagataaat tagccgagca tcttgaaact ataggtgtga gcaactattt agttgaaatt
     1381 ggtggcgaat tacgaggcaa aggaaaaaat ttacaaggct tagattggcg gattgcaatc
     1441 gagaagccgg taatgacaca aggtcaagcc gcacaaatta ccgtgccgtt gcacaatttg
     1501 gcgatggcaa cttcgggcaa ttatcgtaat tattttgaag atgaaaaagg caaccgtctt
     1561 tcacatatta tcgacccaaa acagttacgt ccggtaaacc ataatttagc ctctatcacc
     1621 gtatttgccc caactacaat gacggcagac ggcttatcaa ccggtttatt tgttttagga
     1681 gcggaaaaag cattagcagt ggcagagcgt gaaaaattag ctattttttt aattgttaaa
     1741 aacggcgata aatttgagac acaaatgtcg agcgaattta gcaaacttat tcaatcacaa
     1801 tagttggagt gaaaaatgga aactgtatta ttaacctttg gcttttttgt agccgtaatt
     1861 tttgcgatgt cgattggttt tatcgtgaaa ggcaaaacca tcaaaggcag ctgtggcggt
     1921 atcaccgctt taggtatgaa aaaaatgtgc gactgcgaag aaccttgcga taacctaaaa
     1981 tctaaaatcg cagacggcac agccgaccct gaagaagtgg cacgttttaa taaagagcca
     2041 caattttatg aagtgaaata atatgaatag agatattcgc tggaaacagc ggtttgataa
     2101 ctataaaaaa tcagtaagtt accttcaagc agaagcagaa aaatacgctg ataccgacat
     2161 tgatgtaatt aaaaaaggaa ttatccagag ttttgagatt acacacgagt tagcgtggaa
     2221 gttaatgcaa gatattttaa aatgggaagg tgaagttgat atttatggtt caaaaacggc
     2281 ttctcgtttg gcttttaatc gtgggctaat cactcagggc gaagtttggc tagaaatgat
     2341 aaaaagccgc aatataacag ttcatactga cgatgaaact attttaactg aagaatttaa
     2401 taaaattatc aaggcgtatc tgcctttatt tattgaattt gaacagcgag tagaaacact
     2461 atgccaaact ttggactaag cgaacgagcg acgaaaacta ttaccgatat tcttgcgaaa
     2521 taccctgaag tggagcaagc cattatttac ggctcgcgtg ctaaaggtaa ttatcgtgaa
     2581 ggctcagatg tagatcttac ttttaaagga aaagatctta cttacgatat tgtcaaacgc
     2641 atttggggtg atttagacga ttccgactcg ccctatttat ttgacttgtc gatttatcat
     2701 caattaacca atgccaactt tattgaacat attgatagag taggaaaagt cttttaccaa
     2761 agagaactct aatttcttaa taggcaagcg gttcattttg caaaattttt tgcaaatttc
     2821 accgcttgtt gtttttatta ttaaccaatg tgcttcgcct taaccgaagt tacgggagat
     2881 ttatgacaac tcaattaacc tcaaaaacct acgacactca tttccctaaa ttaaccccag
     2941 aacaacttgc tgaaaacagc aagaaaaaag tcattatcgg tatgtccggt ggggtggatt
     3001 cctcggtttc cgcttttatt cttcaacagc agggctacca agtggaaggc ttgtttatga
     3061 aaaactggga agaagatgat gatacggatt attgtaccgc cgccgccgag cttgccgatg
     3121 ctcaagcggt tgccgataaa ctgggtatga aactgcataa aattaatttt gcagcggaat
     3181 attgggataa tgtatttgaa tatttcttgg cagaatacaa ggcaggaaga acgccaaatc
     3241 cggatatttt gtgtaataaa gagatcaaat ttaaagcctt tttggaatat gcggcagaag
     3301 atcttggtgc ggattatatt gcgaccgggc attacgtccg ccgtacgagc gatgatcaag
     3361 atgcgaaact tttgcgtggc ttagatgaaa acaaagatca gagttacttt ttatatgcgt
     3421 taaataaaaa gcagatcggg cagagtttat tcccagtggg tgaaattgag aagccgattg
     3481 tgcgagccat tgccgaagac ctaggattag caaccgcaaa gaaaaaagat tctaccggca
     3541 tttgttttat cggtgagcgt aaatttaaag atttcttagc tcgttttcta ccggctcaac
     3601 cgggggaaat ccgcaccgtt gagggcaaat tagtcggtcg ccatgatggg ctgatgtatc
     3661 acacgcttgg gcaacgcaaa ggcttgggta tcggtggggt gaaagggcta agtgaagatc
     3721 cgttttatgt ggtggagaaa gacttaatta acaatgtatt gattgtggca caaggacacg
     3781 ataattcagc cctgctttca agtggcttaa ttgcgaaaca gctcacttgg gtggatatgc
     3841 agccgttgcg tgaaaattta cgctgcacgg taaaaacccg ttatcgtcaa gcagatattg
     3901 cgtgtgaaat ccaagtgatt gatgatgaaa ccattcgagt gatgtttgat gaaccgcaaa
     3961 ttgccgtgac gccggggcag tctgccgtgt tttacttagg tgaagtttgc ttaggcggtg
     4021 gcattattga gtcacaatta aaatagttat aaataaatat tgaaatattt tgcatattta
     4081 tgcaaaataa gcgaaaagtt aaggcggtaa aacgcctttt tcattttgat cgatacaaag
     4141 aataatatac aaggaacaga ctgtggcact ttggggtgga cgctttacac aacaagcaga
     4201 cgcaaaattt aaatatttta acgattcatt acgttttgat taccgcttgg cgattcaaga
     4261 tattgaaggc tcaatcggct gggcaaaagc cattacttcg gtaggtattt taacggtagc
     4321 agaattagaa caactaatcg cagcattaaa agaggtgaga gcagaggtag aatctaacct
     4381 taccatcatc ttaaaagatg atgcggaaga cattcacagc tgggttgaat ctaagctgat
     4441 tgaaaaagtg ggcgatttag gtaaaaaatt gcacaccggg cgtagccgta atgaccaagt
     4501 agcggtggat attaaaatgt ggtgcaaggt gcaagcggtg gcattgcaag aaagaatccg
     4561 agctttgcaa gagcgtttgg tttccgttgc cgaagaaaat caagagtcgg tgatgccggg
     4621 ctatacccat ttacaacgag ctcagcctgt gaccttcgct cattggtgta tggcgtatta
     4681 tgaaatgcta gaacgggatt tcagccgttt gagtgatgct aataaacgta tgagcacttg
     4741 cccgcttggt tcaggggcat tggctggtac ggcttacggc attgatcgtg acttattagc
     4801 ccgtgattta ggctttgaag aagccacacg caacagttta gacagcgtgt cagatcgtga
     4861 ccatatttta gagctgctct ctactgcctc gatcagtatg atgcacctct ctcgctttgc
     4921 tgaagattta atcattttta atagtggcga atcaggcttc cttgaaatgt cggatcgtgt
     4981 gacctcaggc tcatcactta tgccacagaa gaaaaaccct gatgcttgtg agctgattcg
     5041 tgggaaatcc ggtcgggtat ttggggcatt aaacggttta ttaactacac tcaaagggtt
     5101 accacttgct tataataaag atatgcaaga ggacaaagag ggtatttttg atgcgttgga
     5161 aacttggcag gcttgtttag aaattgcaga acttgtactg gttgatattc aagtgaatac
     5221 cgaacgcacc cgagaagccg ctcagcaagg ttatgcgaat gcgaccgagt tggcagatta
     5281 tttagtggcg aaaggcgtgc cattccgtga agctcatcat attgttggcg aagcggtggt
     5341 ttacgcaatc agcaaaaaag agccacttga agcattaagc attaacgaat tccagcaatt
     5401 ccatcattcg attggcgatg atgtttaccc aattctctcg ttagaatctt gcttagaaaa
     5461 acgttgtgcc aaaggtggag tgaacccaca acgtgtggca gaggcgattg cggtagccaa
     5521 agccaattta gcttcaaagt aaaaccggat acaagcggtc atattttgca aaaaaattga
     5581 aaaatatgac cgcttgccga ttaaattttc aattttttac gcattaagat tgcaaaatag
     5641 gcattacctc tttaaacttc cgaataattt ttgaatttta tttctactac tttctttaaa
     5701 gagttttata tgacggaatc agttaattct actcaagctg gtacagcact ttctttaggg
     5761 caacaattaa aagcggctcg tgaagcgtta aatctctcta ttacagatgt tgctcaaaaa
     5821 accaacttaa aaaaatcaca tattgaatca cttgaaaatg atatctttat tctacaaaat
     5881 gttgccccaa cttttgtgcg tggctatgtg cgtaattatg tgaaattttt gcgtttacct
     5941 gaatccctta tttcgagcgt taattatggt gaagtcacta ttccaaaaga agtcactaaa
     6001 gtttcttcag taaaaccttc atcaaattca caaggtaaaa ccttaaagta tttaacggta
     6061 ttagtattgc ttgcggcatt aggaatgaca ttactttggt ggtggcaagg gtatcaaaaa
     6121 gaacaggaaa atcgcgagca atttgttagc tctgcaccag ttgctgaagt ggcgaatacc
     6181 gctacaaata atgatgcttc agcacaaact tccgtgcctg ttcagcaacc tattcaggtt
     6241 tcagagcagc ctgctcaagt agcagaaacg gtagttgcag cagaaccggc attaactgaa
     6301 aaagtagagc ctacacaagc agcatcatca cctgtaacac aagaagatgt taaagtggta
     6361 gaagaagtta aacaagctga tgccaccact gcacaggttg aggcagttaa tgttttacag
     6421 caatctcaat cggaacaagc ccctacagaa cagcctgttg cggtaacgaa tgatgagctt
     6481 cgtatcgaaa ttaccggttc acaaagctgg attacagtgc ggggtgctaa aaataaacgt
     6541 ttagcagaaa aattatataa caatggtgag actttaagtt tcaatgagaa tgagcaatat
     6601 cgtttaacca ttggtgcgcc tgccaatgta aaagtgtact ataaaggtca agaagtacca
     6661 ttgaaaattg atgggcgtgt agctcgtatt catttaccgt tacagtaagc ttgatttaac
     6721 gatgaaacgc acgtaaagct agcatttaac gatagctgtc tttacgagcg ttttctgttt
     6781 ttataaattt tcacaattag ctaaaaatat gatacatcaa tcacctatta aacgtcgggt
     6841 atcgaagaaa atctatgtgg gtaatgtgcc tgtaggcggc gatgcaccga ttacggttca
     6901 gtcaatgacc aacacccgca caaccgatgt ggaagccacc gttgctcaaa ttaaatcgct
     6961 ggaacgggtc ggggctgata ttgtgcgtgt gtctgtgccg acaatggacg ctgctgaggc
     7021 atttaaagcg attaaacaac aagtgagtgt gccattggtg gcggatatcc acttcgatta
     7081 ccgcattgcg ttgaaagttg ccgaatatgg ggtggattgc ttgcggatta acccgggtaa
     7141 tatcgggaat gaagagcgga tccgcacggt ggtagattgt gccagagata aaaacattcc
     7201 gatccgaatc ggggtaaatg ccggatcatt agagcgtgat ttgcaggaaa aatatggcga
     7261 gccgacacca caggcattat tagaatcggc attacgccac gttgatcact tagatcgcct
     7321 taactttgat caattcaaag tcagcgtgaa agcctcagat gtatttctag cggttgaatc
     7381 ttaccgactt cttgcaaaac agattgatca gcccctgcat ttaggtatta ctgaagcagg
     7441 cggagcgaga gccggttcgg tgaaatcggc ggtaggctta ggtctgttgc tagcggaagg
     7501 gattggtgat accttgcgtg tgtcattagc ggctgatcct gttgaagagg tgaaagtcgg
     7561 ttttgatatt ttgaaatcgc tgcgtattcg ctctcgtggg atcaacttta ttgcttgccc
     7621 aacctgctcc cgccaagaaa ttgatgtgat tgcgacggta aacgagctag aacaacgttt
     7681 agaagacatt atcacgccga tggacgtttc gattatcggc tgtgtggtaa acggtccagg
     7741 agaggcgttg gtgtctgatt taggggtaac cggcagcaat aaaatgagcg gcttttattt
     7801 agatggcgtt cgtcaaaaag agcgttttga caacgcaaaa ttaatcgacc aattagaagc
     7861 taaaattcgt gccagagttg cacaacaaca taatcgtata gatattgaac aaataggata
     7921 aatatagtgg caaaaacaat tcaagcaatt cgaggaatga acgactgctc accaagtgag
     7981 tctccattat ggcaatgggt tgaacagaaa gtgcgtaatg tgctggcaag ttacggctat
     8041 tcggaagtac gtatgccgat tgtagaaagc actccgttat ttgcccgtgc cattggcgaa
     8101 gtaaccgatg tggtgtcgaa agagatgtac acgttctggg ataacgatga gcaattaacg
     8161 ctccgcccgg aaggtacagc cggttgtgtg cgtgcagcga ttgagcgtgg ttggatctac
     8221 aataatgagc aacgcttatg gtatatgggg ccgatgttcc gccacgaacg tccacagaaa
     8281 gggcgttacc gccaattcca ccaagccggt gttgaagtgt ttggcattgc aaatccggaa
     8341 attgatgcgg agttgattat tctcaccgca cgcctatgga aagagttagg catcgatcaa
     8401 catgtttctt tgcaacttaa ctctatcggc tcgttagaag ctcgtgcaaa ttatcgctca
     8461 gcattagtaa aatttttaga aaatcacacc gctttaatga acgaagaaga gaaagagcgt
     8521 ttggtgaaaa acccgctacg gattttagat accaaaaacg aagcactaca aaatgtatta
     8581 aacgatgccc caaaactgct cgattattta gatgatgaca gccgtgaaca ttttacccaa
     8641 ctttgtgcct tacttgatgc aatgggaatc cgttacgaag tcaatccaaa attggtgcgt
     8701 ggtttagact attacaataa aaccgtgttt gaatgggtca cttcagcctt aggctcacaa
     8761 ggcaccgtat gtggcggtgg gcgttatgac ggcttagtcg aacaactcgg tggacacgca
     8821 acccaaggcg ttggctttgc aatgggctta gagcgtttag tgctgttggt acaagaggtg
     8881 aataaagaga ttgatttacc aaaaacggtg gatgtgtata tcgtattctc cggtgaaggg
     8941 gcaacactaa atgccttcca acttgcagag cagattcgta gcgaattgcc acacgttggc
     9001 gtaatgacac actgttccgg cggtaaattc caaaaacaat ttaagcgtgc agataaagta
     9061 gaagcgcaaa ttgcgttagt gattggcgaa agcgaagtgg ctgaaaagca agttgttatc
     9121 aaagatttac gttcaggagc agaacaaatc acgattgctc aatcagagct gattgctgag
     9181 ctatctaaac gattttagga gaaaaagatg agtaacgaat atttaaataa aaccgaagag
     9241 cagcaatttg aagatgccaa aaattggttt aaagagaacg ggacaccgat tttggtggcg
     9301 attattttag cttgtgcggc aactgccggc tggaattttt ggaaaaatca ccagcttgaa
     9361 acggcacaaa aaacatccgc ttcataccaa agcgtgatgg agagttattt gcaaaatcca
     9421 agcaaaaatc aaccgcttgt tgagaaattt attgccgata ataaagattc aagctatgcc
     9481 gcttttgccc aatttgaagt agctaaacaa gcggtcgaaa aagggaattt ttctgcggca
     9541 aaaacagcgt tacagtcagt tttgacttat tcggattcaa ccttacaatc tatcgctcgt
     9601 tttcgtttgg ctcaaattga cttccaacta aaatcttacg atgaagcact ggcaagtctg
     9661 gctcaaattc aagataaagc gtgggaattg cgtaagcaaa ttctaacagg cgatattctt
     9721 gcagcaaaag gcgatattcc tgcggcgaaa agtgcttatg agcaagctaa aacgaccgca
     9781 aatcctcagg aacaaacctt aattgatgta cgtttgaata acttataaaa acaaagcctg
     9841 attgaaataa aatcaatcag gcttttttgt tggtttagtg ttgctgtgaa ttataaacgc
     9901 attggcataa tcacatattc ggcagagctg ttgtcgcaat cttcaattaa gcaactagaa
     9961 cttgaatcaa ctaagctaaa acgcacacgt tggcatttta aggtgtttaa cacatctaat
    10021 acatagctaa cgttaaagcc gacttccatt tccgggctgt cgtaggcaac atcaatgatc
    10081 tcttccgcct cttcttgctc cggattgttt gcggtaattt tgagtaaatt attgcttaag
    10141 gttaaacgca cccctctaaa tttctcatta gaaagaatcg ctgcacgcat taatgcccgt
    10201 ttaagggttt cggtttccgc ttctagaatg cgatctgcat tgcgaggcag aactcggcgg
    10261 taatccggga atctgccatc aatcagttta gaggtaaata caatgccgtt cattgtaata
    10321 cggatattgc ttgaaccgat ttccaaacgc acggtttcat cgttgctggc aaccaagcgg
    10381 gaaagctcaa gtacggcttt gcgtggcacg ataaccgaat gagtcaaaag ctcttgattt
    10441 agcaccattg tgcaaaccgc taaacggtgc ccatctgtgg caacggtgcg taataaattg
    10501 ccttcggttt caaatttcat tccgtttaag aaataacggg cgtcttggtt tgccattgag
    10561 aattgggtgg catcaatcag acgggcaagg gtagattgat caatcgagaa atccacttcc
    10621 ggtttccaat ccatcaaatt cgggtaatca cttgccggta atgtagctaa actaaattta
    10681 ctacgtcctg ctttgataat ggctttatct tcttcaaatt gtaccgaaat cacgctgtca
    10741 tcaggtaggc ttttactgat atctaggaat tttttagctg gaatggtaaa ttttccggca
    10801 aaatcgaccg cttgtagcag ttgtgcttgg gtggttaatt ccacttctaa atcggtaccg
    10861 gttaaagata gacgattacc ttcaatttct aataaaagat tgttaataac aggcaaagtc
    10921 ggacggctac ttaatacgcc acacacctgt tgtaaaggct taagtaattg ttctctggta
    10981 atggtaattt gcataatcat tccttcatcg ggctaagatg ataatttgcg tgttaaatgg
    11041 atataatctt cttggatacc gctttcggta tcgcgtaatt cattaatggt tttgcaggcg
    11101 tgcatcacgg tagtatgatc ccgaccgcca aattcccgac caatttccgg caagctgtgg
    11161 ttggttagct cttttgccag tgccattgcc atttggcgag gacgggcaat gcttcttgcc
    11221 cgacttttcg atttaatatc ggcaactttt atgccgtaat attcggccac aatgcgttga
    11281 atattttcaa tcgtaatcaa gtaatcaaaa gaggcaaaca gatcttgcaa ggtttcacgc
    11341 accgcatcaa ccgtaatcgg gcgaagggtc aatttttgcc acgcaatcac acggtttaat
    11401 gctccctcca attcacgcac attggttcgg agtttttgcc ccattaaata ggcggcatct
    11461 tcttgcaaat ctgctccacg ttctaaggct ttttggcgaa gaattgccac tcgggtttcc
    11521 aattcaggtg gctcaatggt cgcactaata ccgccgctta aacgggattt aatcgctgtg
    11581 tcaattttat cgatattttt tggcaaaacg tcagaggtta gaataatctg ctttctctgc
    11641 tcaaataaag cattgagtag atgtaaaaac tcttcttgta ctttcggttt attggcaaga
    11701 aattgaatat cgtcaatcat taacacatca agcgagcggt agaatttttt gattttttcc
    11761 gcatcgttat tggaactgtt gatcgcctta ataatatcac gataaaaacg ttccaaatga
    11821 atatatagca cccgagtacc cggtgtgcgt ttaactaatt cattgccgat agcgtgtaat
    11881 aagtgggttt tgcccaaacc ggtgccggca taaaacgaga gtgggttgca atggctttcg
    11941 cctaaattat ccaccacttg ttgagccact aatttagcta attggtttga gcgaccttgt
    12001 acaaaattat caaaggtttg atttggattt agcccggttt taaagccggt attgctgaat
    12061 tctgaactct cgttttttag atttgggctg acctttggct gttctgtcgg tttaatccca
    12121 acttttaacg taaccaccaa attatcattt ttcgccaaaa aacgggcaag ctcggtaatt
    12181 tccgataaaa atttatcttt tacccagttt tcaacaaatt gattttgtgc ataaagtgta
    12241 agttccccat tctcagaact cgcttgcaga ggacgcagcc aagtgctgta atcagttggt
    12301 gagactttcg tttgtaagtg attaaggcaa tcagaccaaa gggaagacac aatttgctcc
    12361 aaaattattg ttattaaagg tcataatgat acctgaaaaa aggggagaaa tcttgcaaat
    12421 ttttgagaga ttttatgggg gcttggaagc gattttaatt ggcgaacaag cggtcgtttt
    12481 ttgttgaaat cttgcaaatt gctaacaaaa aatgaccgct tgcttagtat gatgtgtgat
    12541 ggagttgatt aaatatccgt attctccggc aagaacccac cgctttggtg agcccaaagt
    12601 ctggcgtaaa caccgttttg agcaagcaat tcttcgtgcg tgccttgttc aacgatttcg
    12661 cctttatcta acacgataag tctgtccatt gccataatgg tagagaggcg gtgggcaatc
    12721 gcaaccacgg ttttaccttc cattaattgc gtgagatttt cttgaattgc cacttctact
    12781 tcagagtcta acgcactggt tgcctcatcg agtaataaaa tcggagcgtc ttttagcatc
    12841 actcgggcaa tcgcaatccg ttggcgttgt ccgccggaaa gttttacccc tcgttcgcca
    12901 acgtgtgcat caaaaccggt tctgcctttg gcatcttgca ggtttggaat aaattcactg
    12961 gcggcagctt gttcaacggc tttgatcatc tcttcttcag tggcgtttgg gcgaccgtac
    13021 atcaagtttt cacgcacaga gcggtgtaac agcgaggtgt cttgagttac taaaccaatt
    13081 tgtgagcgaa ggctttcttg ggtaatatca cggatatttt gcccgtcaat cgtgattgaa
    13141 ccgtcttgaa tatcgtaaaa acgcaataat aaattggtga gcgttgattt acctgcacca
    13201 ctacgcccga ctaagccgac tttttccccc ggttttatag tgaggtcaaa atctttcagt
    13261 agcggttttt tcggatcgta ggcaaaatcc acattctcaa atttaatttc gcctttggtt
    13321 acatttaacg gtttcgcatc gattttatct accacattgt gtggtttgga aagcgtaatc
    13381 ataccgtctt gtaccgtacc taaattttca aatagacgag caaattccca cataatccat
    13441 tgtgataagc ctttaatgcg taaagccaaa gcggttgagg tggcaatcgc ccctgcagtt
    13501 actacgcttg aaccccaaag ccataaaccg atacccgcag ttgaaattat taatgccatc
    13561 gaggttagat tagttacggt ttcaattaca gtcactaaac gcatctgttt atgcactgtc
    13621 accataaatc cttccatcga ctctttcgca taggcagatt cacggttgcc gtgcgagaag
    13681 agtttgacgg tggcaatgtt agcgtaagca tcggtaattc gaccggtcat taaacttctg
    13741 gcatccgatt gctcttgagc agcttgggct aatttcggga caaagtagat aatggttgcc
    13801 gctaatgaga tgacccataa aataaacggc acgaataacc agccgtcaag ttgtaataaa
    13861 atcacgctgg aggtggtgaa gtaaaccagc acatacacca acatatcggc acaagtcata
    13921 atcacatcac gcacggaaag ggcggtttgc attacttttg cagacactct tcctgcaaat
    13981 tcgtcttgat agaaacctaa actttgccca agcattaagc ggtggaagtt ccaacgcaaa
    14041 cgcattggaa ataccccttg cagagattga aagcgaatgc tgctggcaag gtaaacaaac
    14101 accactgcaa gtagggcaat aaaaaacata ccgataatcg tccagccttt ttctgcccaa
    14161 agttctgttg gcgagtattt attgacccaa tcgactaaat cgcccataaa gcgaaacaga
    14221 accgcttcga taataccgac agctgcaact aatacggtca gtagtaagat ataaaaccgc
    14281 attcctttag tggcatcgta aataaaagga atgagacctg attttggagt tttcggcatt
    14341 tcatttggat aggtttccac ccttgcctca aaccatttaa acagtttttc aaacataaat
    14401 ttgtgatttc cgaataaaaa tgcaggggca aatagccatt tgcccccgaa aaaatgtgaa
    14461 aaaattatgg attaagtaat ttttcgtcta aggctaaatc ttcgttgcga tttataccaa
    14521 tgccggcagc taatacgttg cgggcaattt gatgtgcttc ttttaaagaa tgctctttgt
    14581 aagagccaca ttgatattca ttcagctcag ggattgccga tacatcagga attttatgta
    14641 acgcatcttc cattgatgcc gtccaagctt tgacaacttc ttctgctgaa ggcgatccaa
    14701 tcagtgacat ataaaaaccg gtacgacaac ccattggtga aatatcaatg atctccactt
    14761 gttcgctatt gaggtgatca cgcataaaac cggcaaaaag atgttccatc gtgtgaatcc
    14821 cacgcaccgg tagaatatca atattcggac gacagaaacg gagatcgaac acggtaatgg
    14881 tatcgccttt cggtgtggtc attgtttttg caacacgcac ggctggtgcg ttcattttgg
    14941 tgtgatctac tttaaaacta tctaataaag gcatttttta ctccatcaat attattccgc
    15001 aattccttga tcccaagccg gggcttcatc aggtagtttg cgctgtaaga aaaatcgtct
    15061 gtttggctgg gcttgaggct tcaccacttt agtgtaaggg gtagagaact caataccgcc
    15121 atttaataac tgcgacattg tgccggagtt catacttaca ccttgcaggc tcacgtccat
    15181 agtgtaacct gaagcttgcc agaattgggt attggttctg actaagtgct tgtatttatc
    15241 ttgaatattg acataaataa gcactcgatc gcctaactca cttagcccta aacggctgac
    15301 tattcccacc tgcattccac ggtaaagcac cggtgcttcc ggctgaatac cgttagcatt
    15361 ggtggtttcg acaataatgg ggaaaccgtt ggcataggtg gtttttaccg tatcggtatc
    15421 tgcaagaaca aattggtttt gagcttgccc tgaaccgaca tcaaccgtaa tgtaattttg
    15481 tagtgctgca tctaaatttt taaagccgga ggtactgatt tcaggcgaga taacattaaa
    15541 tttactgccg gcttttgcaa ttaacggata gtatttcctt tgaatgtaag cggtcgcttt
    15601 tatctgtttt tttgcatttt gtagctcaag tttttcaatt tgacctacgg ttaagcccat
    15661 atatttaatg tccattcctt cgcttaactt actcgcatct tttgcaatca gcgtgagata
    15721 agtattgccc gaagtggctt tctccttact tgcataaagc gttttattgc cttttgaacc
    15781 gccatcatca aagctgatcg ccccttttaa ggtacgcatt aatggagctg tagtgatatt
    15841 cacgcctttg agtgacacat caacactcgt tgccggctca atccagaaac ggcttttctc
    15901 ggttaataga tgacgataat ttggctggat aaatagctca acctcaaatt tttgttgttt
    15961 cggggttatt tttaacacct cgccgacctg aaaatcacga tatagcacca aagagccttc
    16021 gctgatacca gataatgaat ctgccgaaag ggtagtggtg gcttttttat ctaaggtagc
    16081 catgcctgat tccgcacttt ctatatcttt ataaagtgca tattgttttt tcgggctacc
    16141 gtcattttta ccgttaatta agcgaacacc gccttttaac cattcagatg gtgaaccggc
    16201 gtgaactctt aacccatcta gccccaccga catatcaatg ttggatatcg caacaaattt
    16261 gctgttactc ccaatcaggt tgcgataagg cggataaata atgacatcaa aacgtacttt
    16321 gtctaactct aggctacgtt tgacgatttc tccgatttgc acatcgctat agtaaatccc
    16381 ctgattggta tctaccccat aggcttgagg agcaattaag ctaaagctaa gtaaattcgg
    16441 taaacttaat agataatcgg cttcgttttg taccacaaat tccgattgag gttctccttc
    16501 ccccgggtga acctcaaaat agacaccacg cagcagctca cctactttcg tcagctgctc
    16561 tgtgtttaag gagaatttcg gctctttgag caagatttta gtttgggaac gtagtaaatt
    16621 ttcataactt gggtcaatta ataaaacccc atcaatctgt ttatgctgcc ctgattcttg
    16681 ctgtggcaca ccgttgtctt ttacttgcgg taattttagc tgcgaaagca taccaatttg
    16741 cacattttgg tgaaaaacac cagtctcatt aatttttaaa ttatgtgtaa gcggtagttt
    16801 tacgttgatt tcaattccac gtttagctga tttcaaatcc ggatatagct caaatttctg
    16861 tccttgctcg gcaatttcca tattatcagg cgaatcaaaa gcaaccgcac cttgtactac
    16921 cgaggcaagg ctgtccatat tgattttaat accttgtaaa tttacatcag cgctaatacc
    16981 gctaatattc caaaatcggc tctctttttt tactaaatga gcgtattttt gattaatgac
    17041 gacatcaatt tcgatttttt tctggtcttt ggtaaaacga taatcggcaa tattacccac
    17101 tggcacttta cggaaataaa cactcgctcc gacagtaata gagcctatgt catcagagat
    17161 taaacggatc agtaaatcgc catcgctcac ggtaatagcc ggaggatctt cttctgcaat
    17221 aaattcatca acgaaatcgc cttcaccggg aagtagggta atatagttac cagaaacaat
    17281 cgcatctaag cctgaaacgc cagccaaaga agcacttggt tgcactaacc aaaatttagt
    17341 ctgtttgcgt aaaatacttt tggcttcagg gtttatttct gcttgcactt ccacttcttt
    17401 taaattatcg acaaaataaa cacgcttaac ctgaccaatc tgcaagcctt ggtaacgaat
    17461 agcggttttt ccggcagtaa tgccatcacc tttactaaat cgaatcgtga ttgtttcacc
    17521 ttgctctttt aaaatttgga aaaatagcaa agcaccaata ataaaagcaa ctattggtaa
    17581 cagccaaaaa ggagaaattt tgcgaggctg ccggatttgg gcatctacaa cagtgtgggt
    17641 attttcttcc atcgtcattt taaattaggg aaacctatat agaacaatac cgaagaccca
    17701 aagggacttc ggtaatagaa ataagtcaaa ataagaaata ttattttttc tcatcacagt
    17761 tggttaaatt actgcattta ccatacagat ataaactgtg gttagtcaat tccattccgt
    17821 gtttttcact gatttcacgt tggcgacgct ccatatcagg atctttaaat tcgaacacct
    17881 taccacaatc catacaaata atatggtcgt gttcgtggtt catatttaat tcgaatactg
    17941 ctttattcgc atcgaaatta tggcgggtta aaatgccggc ttcttcaaat tggtttaaga
    18001 cacgataaac cgttgctaaa ccaatgtctg agcctttttc taacagaatc ttataaatat
    18061 cttctgctgc aaaatgttgc atttcatcac gaatatcttg cattaatgca aggatagtca
    18121 aacgaggctc ggttactttt aagcctacct cttttaaacg tttaatattt gcttcagaca
    18181 tatatgccac ttatttatct ttatccaaaa tagttattat gcgagttggt ctaagcacat
    18241 ttcttctttc aactgctcgc accatttatt aacacgttca gtggttaatt caggctgacg
    18301 atcttcatca atacataagc cgacaaaagt atcatcatca actaaggcct gagaaacctc
    18361 gaaagtgtaa ccggcagttg gccaatgacc aacaatcaca ccaccatttg gctctaccac
    18421 atcacgcaca gtacccattg catcacagaa atattctgca taatcttcct gatcaccgca
    18481 accaaaaatt gcaacgactt tgccgttaaa atcaatctct tttagggtag gcataaaatc
    18541 gtcccaatcg gcttgcgatt caccataata ccaagttggg atcccaaaca tcagaaaatc
    18601 gtatgcttca atatcttctt ttgtgctttt ggcaatgtct cgaatatcaa ttaattcagc
    18661 ccctaatttt ttctgaatca tttttgaaat attttctgta ttgcctgtat cgctaccgta
    18721 aaataaacct acaactgcca ttgctactac ctatttgtga gataattatt tagaattgtt
    18781 tcaattaact gcccgcgtga aacaccttgt tcagacgcct gttcctctaa taactttact
    18841 aaattcgaat gcagttttaa ttctacccgt tttaaaccgg aagatttatc tcgttttagt
    18901 tggttacgtt tattgattcg aagttgttgt tctctatcaa gaggatttgt acgaggacgc
    18961 ccaacttttg gtacagtcgc aaacagatct aaggttatac aatctgaatc ttgttttgcc
    19021 attttgtttt actattgggc tttagctaat cctcagtttt aatgagaatg ataagctact
    19081 tttaaagtgt gaactatatc aaaagttcaa tcatttgaaa agtaaattac aggcaaaaca
    19141 agcggtgttt ttaggtttaa aatttgcaaa aaccataaat tacacattat gagttatgat
    19201 ttttctgaag cgtgaaatta gcttataatg aaaccgaata acgttatgaa aaaggagata
    19261 gtgtgtcgaa tatccattta gcgattgccg ctgattttac gctggcagaa aaattacttg
    19321 aagcattagc aaatcaagat ttagggattg aaaatatttc agccgttgag cttgagccgt
    19381 ttggtgaaga gcagaattta cgctttgggg caaaagcagt cgcacaatat gcgttagatg
    19441 aagtaaattg ggcggaattt agccatgttc tatttgccgg caaaatggca caagcggaag
    19501 tgttggcaga agcggtgaaa gccggctgtg tgattttaga tttatacggc attaccgcac
    19561 tcatcggcga tgtaccggta gttgtgccaa gtgtaaatga tgaaaatgtc gcaaatttgc
    19621 gtgagcgaaa tatcgttgct ttagccaatc cgcaaatttc acaactggcg ttagccttaa
    19681 agccattgtt gaacgagccg ttaaaacagg tgtgggtaac ctcactttta ccgtctgcct
    19741 attttggcga tgaaaaagtc aaggagcttg ccggacaaac tgcccgtttg ttaaacggca
    19801 ttccgtttga tgaaaatgcg gaacgcattg cctttgatgt tgtgccggct aatgtgcaag
    19861 gagaagagaa aagtctgccg ttctcaaaag cctttgaact gcaaattgca aaagttttac
    19921 caaatttgac cgcttgtact accttccaca gcgtgcaagt gccggtcttt tatggggttt
    19981 cccaaatggt gtcggtgcag tctgaatatc agttagatgc taatgcgtta agtgaagctt
    20041 ggaaagccga aaattggctg aattttaatg aaaattcagt gattacagcg gtgaaaaatg
    20101 gcgaaaacga agagcaaaat gcgttagaaa tcagtcagtt attggcgaaa tccgaacagg
    20161 aagtgcagtt ctggacggtc gccgatgaac agcgtttcag tctggcattt ttagcggtga
    20221 aattactaaa attagtttta gcgtattaag tgcttgcaaa agtatttatt ccgtgataaa
    20281 aatcgtcaac gcccgagcaa ccgattgctt gggcgttgtc attttgttta aacaccgaag
    20341 gtcttatgtt agaaaaatta tttcagctca aagcaaaagg cagtaatgta aaaaccgaaa
    20401 ttatcgccgg tattactacc tttttcacaa tggtttatat tgttttcgtc aatccgtcta
    20461 ttttaggcgt ggcgggaatg gacacccaag tagtgttcgt gactacttgt ttaattgccg
    20521 cttttggtac tatcgcaatg gggttattca gtaatttacc gattgctctt gcaccggcaa
    20581 tgggcttaaa tgcctttttt gcattcgtag tggtgcaaaa attaggttac tcgtggcaag
    20641 tgggtatggg ggcgattttc ttaggctctg tcggcttatt cctattaact gtattacaag
    20701 ttcgttactg gtttatgtct gcgattccac ttggtttacg tgtaggtatt ggtgccggta
    20761 tcggtttatt cattgcccta atcggtttta aaaatatggg cttggtggtg ccaaatccgg
    20821 caacgcttgt ggcactaggt gatttgcacg acccgaaagt gttaatgggg attttaggct
    20881 ttttcatcat tgttgtatta gcggcgaaag gtattcactc aggcgtgtta atttcaattg
    20941 tgattgttac cgctcttgcc ttagcctttg acccggcggt gagctttaac ggcataatgt
    21001 ctatgccacc aagccttggg gcagttgtgg ggcaggttga tattgccggt gcttttgatg
    21061 ttgccttact cgggatgatt ttctccttta tgttggtaaa cctgtttgac tcttccggca
    21121 ccttaattgc ggtgactacc aaagcaggct ttgcggatga acaagggcgt ttcccgaaaa
    21181 tgaaacaagc tctgctagta gatagtaccg ctgcaatggc aggctcttat atgggaactt
    21241 cagcgatttc tacctatatt gaaagtggct ccggcgtttc agttggcggt cgtaccggct
    21301 taactgcggt ggtagttggg atcttattcc tattaaccat tttcttctca ccacttgcag
    21361 ggttagtacc tgcctatgca actgcggggg cattggtatt tgtaggaatt ttaatggcat
    21421 ctagcttaat tgaagtaaaa tgggacgatt taactgaagc tacgccggca tttattacta
    21481 ccgcaatgat gccgtttact tactccatca ctgaagggat tgcattcggc tttatcagct
    21541 actgcgtaat gaaagccttt acagggcgtt ggaaagaaat caacctttct gttttagtgg
    21601 tttcacttct ctttattgct aaatttgtgt gggtgggtta agctctaccc ccctctccct
    21661 gatttttctt ctaaacgaag aaaaatctat ccctctccca caaaggggag agggtatttg
    21721 attcattatc tatgtgtttc gtgtattccg aggtaaaaca atgtctaatt cagttcaaaa
    21781 acttcttttt atcatcaatt ctgctcctta cggcaatgaa acgtttttca gtgcgttgcg
    21841 tttggcatta caaattcaag aacaacataa agccaatacg gaaattaaac ttttcttaat
    21901 gtcggatgca gtcaccgcag ggctggcaaa gcaaaatccg gcagagggtt atcatattca
    21961 gcaaatgctg gaaattttaa ccgcccaagg ggcaaacgta aaattatgca aaacctgtac
    22021 taatgctcga gggattacag atttgccttt agccgatggg gtagagattg gcacattaat
    22081 tgaactggca gattggacaa ttcaagcaga taaggtactg aatttttaat gcaaaatatt
    22141 gatgttgtgg tgattggtgc cggtgcggca gggctgtttt gtgctgccca actggggcaa
    22201 gctggcaaaa aagtggtggt gttagacagc ggtaagaaag tcggacgtaa aattttaatg
    22261 tctggcggtg gtttttgcaa ttttacgaat ttagacgtaa gtgccggaaa ttaccttagc
    22321 caaaaccgcc attttgtgaa atccgccctt tcacgttata cccaatggga ttttatttcg
    22381 cttgtcagcc actatggcat tagctatcac gaaaaagagc tagggcagtt gttttgtgat
    22441 gaaagctcgc aacaaattgt cgatttacta caagcagaat gcaacaaagg caaggttgag
    22501 attctgttac ggcaagcggt catttctgtg gaaaaagttg caaatttttt tgaaatttcg
    22561 accgcttgtg gcaagttcca atccgaacac ttagtgattg caaccggagg gctttcaatg
    22621 ccggctctcg gggcaagccc ttttggctat caacttgccg agcagtttgg tattcctgtt
    22681 gtgccaccac gtgcaagcct tgtgcctttt acttggaaag agagcgataa atattttgcc
    22741 gagctttccg gcattgcact gccgattact gtttccgcca atggcaaaag ttttagcaat
    22801 cagatgttgt ttacgcacag aggcttatcc ggcccggcaa ttttgcagat ttccaattat
    22861 tgggaattgg gggaaacggt agagattgat ctgctacctt cgcagtccat taccgatata
    22921 ttgagcgaac tacgccaatc ttcgccgaaa ttacagctaa aaaccgtatt atctcgttat
    22981 ttacctaaaa aattggttga agtttggctg gaacagaaat tgctgaccga taaagtgatt
    23041 gccgatttga gtaaaaaaga tctgacctta ttagagcaat ttatccacca ttggcatttc
    23101 ttgccaaacg gcacggaagg ctatcgtaca gcggaagtaa ccaaaggcgg tgttgatacc
    23161 gactatattt catctaaaac gatggaagcg aaaaatacag cagggcttta ttttatcggc
    23221 gaagtgctgg atgttaccgg ctggcttggt ggttataatt tccaatgggc gtggtcatct
    23281 gcttttgcct gtgcagaagg gattattgaa aaaagcaaat aactaaaaaa gcaaataact
    23341 aaaaaaccaa acaaaaaggc gaacacaatt gttcgcctta ttttatgctg aattatcttg
    23401 cacggaaaat aatgcgtgct ttgcttaaat cgtatggagt catttcaacc gttactttat
    23461 caccggttaa aatacgaatg tagtttttac gcattttgcc tgaaatatgt gcggtaacaa
    23521 tatgaccgtt ttctaattcc acacggaaca ttgtatttgg taaggtttct aaaatcgtac
    23581 cttgcatctc aatgcaatct tctttagcca tttattcctc tttaaagttt taatttttat
    23641 atgatgccat tcggcgaaaa acggcggata ttatacgctt attcgctcaa attacaatcg
    23701 tttatccatt tgagtgtaaa ctatttacgc ttaatccaac ggcgacgtga gtgaaaacgc
    23761 tgggtttggg tttttacttg actcataagt ggttttgggc ttatctgtac atgatgaatt
    23821 ttacgacgaa aatagtagtt aatgctactt gccaacaata tacctgtgag tagcaaaata
    23881 attatttccc cataaagttg atgaaattgt tgctctactc gtgctttagt agtttgccca
    23941 tattctgcat caaacgtgac gcgtaaaaag ccaaccaacg cctgttgaga aaatattggc
    24001 tcaacaattt gctgagtttt ggcagattgc tctgaatcga gcaatacttt taaatctttc
    24061 gcattttggc tttgagccag tagcacgcca tttggtgaat agatattggc atcaataata
    24121 aaatcttctt tggcaaaact atccaacgca tcaaccagct catcggtttt ggcattttta
    24181 actaacaaaa acgaaaaaat atttgcttgc tggcgaacca ataggtgtga aaggtttgat
    24241 acttgattaa tgctggccaa ttgtgagcct agcttaaatt ggtttacgcc cattaaaata
    24301 accgccacga tcccacagca gagtagcgta atccctgcca gcaaaagcgt tttcgttatt
    24361 ttttcacgac taatgtacat cgaaattccc tcaaaatgat gcgtgattgt agcacgcttt
    24421 tctgttagat tagtgcagta aatttaaaca acctaaaata agacaatgac aaacacaatt
    24481 tttatctatt caaaaacctt aaacgagcgt gaaattgaac agttttcaca acaaacggca
    24541 gcaattttgc tgaaacaagc ggtctattta gactacaaaa ttgcattttt ttccacaaat
    24601 ttaaccgctt gcgagctgcg tgaaacggca cagaaaatca atgcggatat tagcgatctc
    24661 actattattc caaccttaaa ccaaggcggt ttgctattaa tggatatgga ttccaccgct
    24721 attaaaattg aatgtattga tgatattgcc aaacttgccg gcaccggcga ggtggtgtcc
    24781 gccattactg ccagtgcaat gcggggcgag ctggatttcg agcaaagttt acgcaagcga
    24841 gtcggcacgt tggaaaatgc atcggaaagc attttgcaaa aagtgcggga aaatctaccg
    24901 cttatggacg gctttgagca gatggttgct attcttaagg aacacggctg gaaattagcg
    24961 attgcgtccg gtggatttga ttacttcgcc gattacttaa aacaaaaata cgggttgaat
    25021 tttgcggtct ctaaccaact ggaaattatt gacggtaaat taaccggcaa ggtgttaggc
    25081 aaagtagtgg atgctcaaca taaagccgat accttacaga atttagcgac aacctttaat
    25141 attccaccaa atcaatgggt ggcagtcggc gatggggcaa atgacttacc aatgttaaaa
    25201 accgccagtt taggcgttgc tttgcacgct aaaccaaaag tgcaagcaca agctgatttt
    25261 gtggtaaact tcggggactt aacggcatta tgtttattac ttaatgccaa tcatttattt
    25321 caacattaat tgagaggaac aacaatgcca tcatttgata ttgtatctga aatcacgatg
    25381 cacgaagtgc gtaatgcggt agaaaatgcc aatcgtgtat taagcacccg ctacgatttc
    25441 cgtggggtgg aagccgttat tgagttaaat gaaaaaaatg aaagcattaa gctcacgacc
    25501 gaatcggatt tccaattaga gcagttaatt gagattttaa tcggctcttg tgtaaaacgt
    25561 gggatcgagc atagttcatt agatatccct acagaaagtg agcatcacgg taaactctat
    25621 tccaaagaaa ttaagctcaa gcaagggatt gagtcagata tggcgaagaa aattaccaag
    25681 ctgattaagg attctaaaat caaggttcaa gcccaaattc aaggcgagca agtgcgtgta
    25741 acgggcaaat ctcgtgatga tttacaagcc gcaattcagc tagtgaaagg ggcagattta
    25801 gggcagccat tccaatttaa taatttccgt gattagcaat tcctgcaatt aatgatgaca
    25861 agtggaaaaa ttcagcaaaa tttgaccgct tgcattaata attcaacata aaaggaagag
    25921 atgatgagcg agcaaacaga aaagaaaggc tggtttaaaa aagcccttga gaaatatgat
    25981 gccttttgcg atgagctagg ggtaaatcaa ggtgcttgcc gaggttgtgt ccctgtggtg
    26041 aagtttgacc ctgaaccgga aaaagagcag ccagaaaaat cagaaaataa aacatagaaa
    26101 aaatgcacaa tggtaagata cattgtgcat tttttatagg atttttaatt ggcgtgatga
    26161 tgggcaaaat attgcttaac tccgccatct ttcttgcaag gattctgaat atcagtagag
    26221 taactaccgt taaaacaaag agcagtagca ttcgatggtt taatcttttc ctgtttagtt
    26281 agggctggcg gttgagtatt ggtttcacta atatagatcg ttttaggttg agaatagtct
    26341 atatttttgt cgccatttac gacttgaacg ggggtgttcg agctgcaagc tacaaccgat
    26401 gctgaagcca atgtaagtat aatgatatgg tgttttttca tgggtaattt ccgtttttat
    26461 atttttaatt gagagaatgt taaaaagggc tgatttctca acccttaaag ttatgcctta
    26521 agcattttta ttaaaagttt gtcctaactg aatttcatca tttaatacag gaattaactg
    26581 ctctagttga tctttttcaa attcgctgag attgccgata ggtagaactt tttccacacc
    26641 atttgtacct aaacgaatcg ggtaagcaaa gaatgccgga gaggtttcgc cattggcatt
    26701 atctacataa gcataacgaa tgacatcttc cccgattaag gctctcacta aaccaagtgc
    26761 aaattctgct cctgcttgag ccatagataa ggttgctgag ccaccacctg cttttgcctc
    26821 aaccacttca gtaccggcgt tttggatacg atgagttaat tgctcgattt gttcttgagt
    26881 gaactcaagt tttaagccat ttactgttgc ttgtgaaagc agtggaagaa tagttgtgcc
    26941 ggaatgtccg ccaatcacag gcactcttac atatttcaca tttacgtctt tcgcttcagc
    27001 cacaaaggta ttcgctcgaa taacatctaa tgttgtaaca ccgaaaagtt tatttttgtc
    27061 atacacaccg gcttttttca atacttctgc cgcaatcgga ataatggtgt ttaccgggtt
    27121 agtaataatt gcaatgcaag ctttagggca aactttcgct gctttttcga ctaagttatg
    27181 cacgatagtg gcattcgtat tgaataaatc ggcacgtgtc atccccggct tacgggcaac
    27241 accagcagaa ataacgacca catcggcatc ttttagtgcc tcagtcggat cttcacctgc
    27301 aaaaccggtt acttttacat cagttggaat atggcttaaa tccactgcaa ttcctggagt
    27361 aacaggggaa atatcgtaaa gagataattc agatttagcc ggtaaattga gttttaataa
    27421 taaggcgagt gattgaccga ttccacctgc agcacctaaa agggcaactt ttttactttg
    27481 acacataaaa tttctcctaa atgttatgga agtttagacc aatttagtct aagccaattt
    27541 tttgggcgat tcaaacggca aatctcattt ttgagacata gagcaaattt ttagctgatt
    27601 tttatgggtt ttattgattt atttgcataa ataagcaaga attatgaata tttttaagtt
    27661 tttgtgaata agagtgtgaa agtggacaag atagatagtt tatcagaagc gtttaaatcg
    27721 ctgttaaagg aagaaaaatt cggctcgcaa agtgaaattg ttgccgcact acaagagatg
    27781 ggctttgata atatcaacca atccaaagtt tctcgaatgt tatcaaaatt tggtgcagtc
    27841 agaacccgta atcctaaaat ggaaatggtg tatcagctac cagtcgaatt aagtgtaccg
    27901 actacctcca gcccacttaa aaatttggtg gtagatattg atcataatga tgcgttaatt
    27961 gtggtcaaaa ccagccccgg tgcggctcaa ctgattgcac gtttgctcga ttcaatgggt
    28021 aaagccgaag gtattttagg cactattgct ggcgatgata cgatttttat aacgccggta
    28081 cgcaatgtgc aaattgaaaa attggtgaag aatgtgacac agttatttga aacatcatta
    28141 tagaataagt aaaggaggac ttaatgttct ccttattttt taggagatta ttatgcacat
    28201 ttttataaca ggtggtacgg gttttattgg gcgtgaatta atccagcaat taaaatctga
    28261 aaatcaccac tttacacttc ttactagaga tacagaagcg aaaagtgatg atttacagat
    28321 taattattgc tattcacttg atgaacttgt tgatttaaat gattttgatg cagtaattaa
    28381 ccttgccggt gagccgattt ttgataaacg ttggacagac gaacaaaaac agaaattgat
    28441 tgaaagccgg gttaacctaa cgaataagct cagtcaatta atgaatgcaa gctctaaccc
    28501 tccgcatact tttctctccg gttcggcaat cgggatttat ggcgatttgc ctccttctgc
    28561 aaatttttat acagaatcga ccgcttgtta tcaagattgc tttaccaacc ggctttgcca
    28621 acagtgggaa gccgctgcac taaaagccgc aagtgataaa acccgagtgt gtttaattcg
    28681 taccggcacg gtattttcgc ccgaaggcgg agcattaaag aaaattttac cgctttatcg
    28741 atgcggatta ggcggaaaac ttggttcagg caaacaatat tgggcgtgga tcagccgccg
    28801 ggatcacgta caagcggtca tttttctgct caaaaatgca aattgttcgg gtgcttataa
    28861 ttttgttgca ccaaatccgg tgagaaatga agaatttaat cgtattttag cgaatgctgt
    28921 taatcgcccg gcattcttta ctgtgcctga atttgccttg aaattaggct taggcgaacg
    28981 agcttgttta gtcttagata atcaacagct cattccggaa aaactactcg cagccagttt
    29041 tgtattccaa gatccgattt taaccgagaa cgttttctta aacccataat ttaggctata
    29101 atgctgtata aaagcacaga ttaaaaggtg attatggatt tctcattatt attagacggt
    29161 ttaaatgaca agcagaggga ggcggttgct gccccgattg gtaattattt agtgttagcc
    29221 ggggcgggtt cgggcaaaac tcgggtttta acccatcgca ttgcgtggct gattggggtg
    29281 gaaaatgtgc cggaatccaa tattctggct gttaccttta ccaataaagc ggcggcggaa
    29341 atgcgacatc ggattgagta cactctttcc caatcgggcg ataatcgatt gttcggaatg
    29401 tgggttggta ctttccacag cattgccaac cgcttacttc gttcccacta tttagatgcg
    29461 gatttaccgc aagatttcca aattatggat accgaagatc agcaacgttt actcaaacgt
    29521 ttactgaaac tgcataatat tgatgagaaa cattttccgc caaaacacgt tgcgtggtat
    29581 atcaacgccc aaaaagataa aggcaaacgg gcaaaagata ttgatcacta taacgatccg
    29641 aatgaaaaaa aattggtgga gatttaccaa atctatcaag atgcctgcga ccgagccggt
    29701 ttgttagatt ttgccgagct gttgattcgg gcttatgaac tattcaaaac caaatcaacc
    29761 attttgcaac gttatcaaca acgttttcag caaattttga ttgatgagtt tcaagacacc
    29821 aacaatattc agtacgactt aattcgtttg cttgccggcg atgtcggcaa agtgatgatt
    29881 gtcggcgatg atgatcagtc tatttatggt tggcgtgggg cacaggttga gaatatccaa
    29941 cgtttcttaa atgattatga caacgctcaa accattcgct tagagcaaaa ttaccgctct
    30001 accggcaaca ttttaagctg tgccaatgaa ttaattgcca ataacgataa ccgcttaggc
    30061 aaaaatttat ggacagatag cggtgatggc gagcctgtgg atatttactg tgccttcaac
    30121 gaacttgatg aagctcgctt tgttgcctcg caaatcaagc aatggaaaga agacgagggt
    30181 gatttggcgg aatgtgcggt gttgtatcgc agcaacagcc aatctcgtgt gattgaggaa
    30241 gctttaattc aagcgaatat tccttatcgc atttacggtg gaatgcgatt ctttgaacgc
    30301 caagaaatta aagatgctct ggcttattta cgcttaatcg ccaatcgtca agacgatgcg
    30361 gcgtttgaac gggtgatcaa cacgccaacc agaggcattg gcgatcgtac cttagacaca
    30421 ctccgtcaaa ttacccgtgg tcgccaaatt acgctgtggc aagcaattca agtggcggtg
    30481 caagaagaac aactttcagg gcgtgccact tcttccttat tgcgttttgt agagctgatt
    30541 aatgctcttg atcaagaaac cgagcagatg tcgcttgccg aacaaaccga ttttgtgatt
    30601 aaaaaatcgg gtttatatga aatgtataag caagaaaaag gcgaaaaggg cgaagttcgg
    30661 attgaaaact tagaagagtt agttaccgca actaagcagt ttgtgaaacc tgacgaagcg
    30721 gaagagctga ccgatcttac cgcattttta acccacgcct cacttgaggc tggagaagcc
    30781 caagcctcgc aacacgaaga ttatgtcgaa ctgatgacgc tacattccgc caaaggattg
    30841 gagtttcccc gtgtgtttat tgtgggcgtg gaagaaggga ttttcccaag cggaatgagc
    30901 tttgatgaag gcaggttgca agaagaacgc cgtttggctt atgtcggcat aacccgagct
    30961 aagaaaaaac tgacgattag ctatgccgaa tcaagacggc tttatggtaa agaagaacgc
    31021 cacgttccgt ctcgctttat tgctgaatta cctgaagagc atattcgaga agtgagattg
    31081 agaggctcaa ttaaccgagc ggcaagtttt aaccaagcta attcatttgc aaaaaatccg
    31141 acaaaaacga ccgcttcctt tttaaacgat gatacttgga aaatggggca gaaagtgaac
    31201 cacgctaaat ttggacaagg cacgattatt aatgtggagg gctcaggtga agccacccgt
    31261 ttgcaagttg cctttgtcgg caacggcatt aaatggctga ttgccaaaat ggcaaattta
    31321 gagaggattt aggcgaataa aaagtttttt gcaggaatat agatggcgag atatattgcc
    31381 ccttaacctt aaactaaggg taaataaaat taaataatgc aagctagata taatgtaaag
    31441 tatcagaaat aagatattaa tttaagataa agaatagatg gctggggtac taggattcga
    31501 acctagggat gccgagatca aaacccggtg ccttaccgct tggcgatacc ccaaaagaaa
    31561 aaactaactt acgttagctt atatagattt gaatgtttga aattaagtgg ctggggtact
    31621 aggattcgaa cctagggatg ccgagatcaa aacccggtgc cttaccgctt ggcgataccc
    31681 caacactaat ttttgttaat cgataaatgg tgcgggacga gggacttgaa cccacacacc
    31741 tcgcggcgcc agaacctaaa tctggtgcgt ctaccaattt cgccagtccc gcaatggtgg
    31801 ctacagcgag attcgaactt gcgaccccaa cattatgagt gttgtgctct aaccagctga
    31861 gctatgtagc catttgcgtt caccatatcg gtcaacggag tgcattatgc tgattttagg
    31921 gctttccgtc aaatactttt tttaaaaaat ttgaattttt gattcgcttg tatagttatt
    31981 cgtcgttttg gcttaaatct agcatttttt gtttataaaa taatagctta tattctgcta
    32041 tttcaccgtt tgcatttcta attttaattg agccagtaca ggctcaacat cggggaattg
    32101 cccttcccac aaagaaaacg caaacgctgc ctgtccaacc aacattccta atccgtcttg
    32161 gcacgctgtt gctccacaac gccttgcata attgagaaaa ggagtttgca tattgggggc
    32221 atattgcata tcgtaaatat tcgccgatgc tataacagat tcaggcaatt caacatattt
    32281 gccttgcaga ccgagagagg tggcattgac gattaaatta aacagttggt ttgccaaatc
    32341 gcttaaacaa gcggtctgaa ttttgccaaa ttttgcaaat ttttcggcta aaacgaccgc
    32401 tttctcctgc gtgcggttat atagagtaat ctctaacccc gctttaagta acggaagtaa
    32461 tacgcctttg gttgctccac ctgctccaag aattaaggtt ttatgccctt tttgtaacca
    32521 acctagccgt tccaaatcag aaactaaacc ggccccgtcg gtattatcgg catataaccg
    32581 tccatcttct aagcgtttaa gcgtattaca cgcctgtgcc aacaaagcgg tttcgctaaa
    32641 ttcatctgcc aatttaaagg ctctttcttt aaaaggggcg gtgatgttgc aaccttttgc
    32701 tccagaagcg aaaaaatcgg ctaattgttg ctcaaaagcc gtttcatctc ctaagttagc
    32761 gatatattca atgttgcgtt gggtttgtaa agcaaagagt tgatgaatac ggggggattt
    32821 actttgagca atcgggttgc cccacacggc atatcggttc atttcggctt atccttgtct
    32881 aaaaatctgt tggctgaaaa tatctcgaat ttcggaaggg ttttctctac ctagcgtgtc
    32941 tgcgtgtaat acaggaaaat cttgaccaaa ctgatcgatg acttcttttg cattgcggca
    33001 aggtggttct ccgctcaaat tggcactggt agaggtcaac gcaacgccgc ttgcctcaca
    33061 caactgaacc accgccggca cattacataa acgtacggca atagaatcaa atttgccggt
    33121 gaggtaactt ggcacagtat ttttaaccgg tacgatccaa gtaattgcct gctcgccaat
    33181 atggcttagg cgttgccaag cctgttccgt cattcgagct tcatcaatat agggaagaag
    33241 atactttaaa tcagaagcca gtaaaattag ccctttttcc tcagggcgtt gttttaatac
    33301 gagtaatttc cttaccgctt tttcactttg tggattgcag cctaagccaa aaaccgcttc
    33361 ggttgggtaa gctacaactt cttcttgctt taattgatta actatttcta aaaaattatt
    33421 cattcggttt taattctgtt tggtgctggc aacttttgtt agcacaaatg gtgaattgct
    33481 tgcccttaat ttttttgatt gtagcgagtt cacaaccaca tttttcacac aagtggttaa
    33541 tcggtcgagt tgctaatgta aatttgcaat tagggaagcc tatacaacca taaaatattt
    33601 tgcctgaacg cccttttcta gcaatcagtt tatgttgctt gcattcaggg caatcaaact
    33661 cttcttcaac ctcagcttct tcgtgtacga tgaagtggca ttcagggtaa tggctacagc
    33721 cgataaaaat accataattg ccttgtttta attggaggtt tccgccacat tcagggcaaa
    33781 gttcatctaa ttgcttaata atatgaccgg cttgatgtaa tggcttaata taatcacatt
    33841 cagggtaagc tgaacaaccc aaaaataacc cttttttgcc ctgcttaatt tgcaacggcg
    33901 agccacattg tgggcaagtt tcggtctgtt tggttgattt gaaaagtacc atattgattt
    33961 gctaaataag cgtaaattca atcacaaaaa acgcattgtc attcggataa atctcccgaa
    34021 taacttgttt caattcggct aagctcatat tttcttgttt agcgtgttgc tcgtttaatt
    34081 catcaaacac tataggtgtt accgatagca ctttaatatt ggcgaaaaat ctatcggttt
    34141 cattagtaaa aaccgctaat tcttggtttg gttgaaaata agattctgac ttgtctcgaa
    34201 tcgtaattgt ttttttaccg cttaaaatat cggcttcaaa tcggctgaaa aaggtaattt
    34261 tctctctatt catattcatc gctactgtaa tccagagcca ttaaatgact aaaatgatcg
    34321 ttataaaaac cacggctaac cataaatcgc cacattttct gctttgcttt cagatcccat
    34381 acaagcggtc gttttttctc aaaaatttgc tcagctaatt caaaccaatc cacttcggcg
    34441 ttttctaatt cttggttaat taaccaatct tttacccctt taagttttag ctcttgcttt
    34501 aaacggcgag gcccaatgcc ttgcattgaa cgataacgga taaaagtggt acaaaagcgt
    34561 tcatcacttt gccactgatt cgcttgagct ttttcaatcg ctgcatcaat ctccgtgagt
    34621 tcatactctt tttgctttag tttttgccga agctcttgct cgctgtaatc acgctttgaa
    34681 agtaaatata gcagataatt aaccgctgtg tatttatttg ttttagtagt agatgttgtc
    34741 atttatcggt tataaataaa aatgcgattt tcacgttgag cgaaaaccgc ataaatttaa
    34801 ttagagttct tcttcactaa attcatcatc tgcattgtct gcattttcag aatctggagt
    34861 agccgtaaaa gttgggtttg aaatgagtag atttcgaata tcttgctcaa ttttactcgc
    34921 cacttcaggg tgttctttta accatttgat ggcattattt ttaccctgac cgattttctc
    34981 cccttcataa gagaaccaag cccctgcttt attaatgaag ccgtgagatt ccgctaaaat
    35041 gagtaattca ttcatacggg caatgccctc accgtacata atatcaaatt ggacttcacg
    35101 gaacggtgga gcaaccttgt ttttcacaat tttcactttt gtttcgctac cgataacctc
    35161 atcaccgtct tttactacgc ctgaacgacg aatatctaaa cgtactgaag catagaattt
    35221 aagggcatta ccaccagttg tggtttcagg gttaccgaac attactccaa ttttcatacg
    35281 aatttggtta atgaaaatca ccaagcagtt ggtcgctttg atatttgcgg ttaatttacg
    35341 caatgcttgt gacattaaac gagcttgtaa gcccatatgg gaatcaccca tatcgccttc
    35401 aatctctgct tttggtgtaa gtgccgcaac agagtccaca ataattacat caaccgcacc
    35461 ggaacgaact aacgcatcac aaatttctaa tgcttgttcg ccattatccg gttgtgaaat
    35521 taataatcca tctgtatcta cccctaactt acgggcgtaa ataggatcaa gtgcgtgttc
    35581 ggcatcaata aaggcacaag ttttaccatt tttttgggct tgagccacca cagataaagt
    35641 taatgtagtt ttacctgaag actccggtcc ataaatttcc acaatacgac ccattggtaa
    35701 accaccaatg cctaatgctg agtctaaacc aagagaaccg gttgaaactg cttcaatatc
    35761 aagggcttga gtatcgccta acttcataat tgagcctttg ccaaattgct tttcaatttg
    35821 agctaatgcg gctgccaacg ctttttcttt ttgttccgga tcaatctgtt taaccggagt
    35881 gttcttttga ctttttttct ctgccatatt ctatcctttg taaactttta tctaaaagca
    35941 accgcttgtt gctgcaaaat aactgtatat tattatagta tttacttatc cagttgcaag
    36001 cattttttta ggattttcga tcaagatcac aaaaataaat ttgcgagcaa ggcaatgccc
    36061 ttggttcctc aaagggatta agagcattaa tcaacataat tttttcatat tgatgcaaat
    36121 cttgcttggc tattttggct aaaacgactt tcccttcatc aagcaattta ctaagctgag
    36181 tgcctttgag caaataatgt tgcgggctat accagattcc ttgttttagg aacagtaaat
    36241 tgccgatgga gcaatcactg acgtagccat tattgagaat aatcacctct tcattttgta
    36301 aaatagggag caaatcaaac cgcttgcggt cgctaaattt gaggtgataa tcccaatttt
    36361 ccacctcaac caagcgaaaa cgttctactt ttttgggcga atagataaaa aatttcagct
    36421 caaattctgt tgcgttgtaa tctattcggc aacgtacttt gccccgttga gaagcctctg
    36481 gcacaactaa aatatcagca aggctaaaac gaggttcaca gccaaaatat tcttgtgttg
    36541 cttgctcaaa acgttgttga tgatactgta agttctgaac tttgccgtca ataatcgaaa
    36601 gggtttcaaa tagcggaaat cggcacatag actttctcta acagttcatt atattcatca
    36661 gttaacacac tttgtgaggt aatgccacca ccactatgaa acacaagccc gtttgaggtt
    36721 tgagcaatgt aacgaattgc caccgcactt tctaagctct cgccatcaaa ataaccaaaa
    36781 ataccggtgt agtaaccccg ttttcctaat tctgcttgct gaataatcga aaccgttttc
    36841 tctttcggtg caccgctaat ggagccggca ggtagtaatt ttgccaatat cgaaccgata
    36901 ttttcttgcc aattttcacc taattcgcca cagatctcgg aacttgtctg caaaattgcc
    36961 cctcgatggg tttctacttt ttccacataa cggtatttag taacttcaat atttttcgcc
    37021 accaacgcca agtcatttcg gatcaaatcc acaatggtat tatgttcggt aaactctttt
    37081 tccgaagcca ttaatttctg ctcggcattc tcctcatttg cattaattgt gcctttcatc
    37141 gggtaggaaa aaatgcggtt attttcaatt cgcacaaagc attcagggga aaaacagacg
    37201 aacctgcctt gcaaataaca tttatatttt gctttgctgg cggcaaaaat ttccgccaat
    37261 gaataattgg tttcaatggc agtcgggtag ctcaaattca gcaagtagct attgccggct
    37321 tgaatttcct ttttcactaa ttcaaacccg gtttggtatt cgctaaacgg aatcggattt
    37381 gccgataatt caaaagcttt agtcggtttt tcaaccggct tttcgagatt cgatttgcaa
    37441 aaaaattcaa aaaaaagacc gcttgcgtga gcctgttcta gcggaaaaat aagtggcttt
    37501 tgctgctcaa aatcaattaa aaagaaaaaa gggcgttttg cttgcccgta gtgattggct
    37561 tggtgaataa aatcttgcat agaaaacaca atggctgaaa ttggctgaat catcaaaagc
    37621 tctgttataa tgcaaagcaa tagatttgaa aagcattttt taaaaaaggt tttaccgatg
    37681 aacaacacca ttcattttca agaaattggg atctacatcg cccttgccgt ttgtgtgctg
    37741 gtaggcgttt atctcttttt cttgaaatcc cgttatcagc gaaatgccta cgaattaagc
    37801 caagatcttg gcaaaatcac cgaaaatttt gaacaaattc agcaaaaata tgaggtgttg
    37861 gctcaagaaa aaaatcagct tgagcagtgg gcaattcaac aacagaccaa atatgaagca
    37921 gtgagtgaac gtttaaacga gcgagatggg caattgcaac gattccaaca aaaaatcgaa
    37981 cttgccgaac agcaagaaaa ccagctggaa cgctatatta atgagctaaa agaacgtgtg
    38041 ggttcttccc aagcaaaggc agaaagtttg gaagaacagc tacaatttag ccaaagttca
    38101 ctctcaacta aagagcggga aaatcaagcg ttatttagcc gtttaaacga ggtacaaaac
    38161 gagctgaccg aactgcgtac tacgctttcg gaaaaacagg caaattttga agcacaacaa
    38221 cgcaatttta ttgaggtaaa acaacagctt aatgtggaat ttcaacattt ggcacaacaa
    38281 attcttgacg aaaaaagcaa gcgttttagc gaaaccaatc aaagctcgtt agaagctcta
    38341 ctgaagccgt tcaaagagca aattgaaggc tttcaaaaac gggtgaatga ggtacatagt
    38401 gagtcgctca aaggctcggc aaatttagag gctgaaatta agcgggtgct acaaattggc
    38461 gtttcaatgt cggaagaggc acaaaatctg gcaacggcat taaaaggcaa taataaaatt
    38521 gccggcaact ggggtgaagt acagcttgaa agtgccttac aatctgccgg tttactcgca
    38581 ggcgagcatt accaagccca agagagtttt cgtgatgaag aggggcgacg ttttgccccc
    38641 gattttgtgg tgcatttgcc ggatcaaaaa catctgatta ttgacagtaa agtctcgtta
    38701 gtagcgtacg atcaagcggt cagatcagaa gaaaattttg caatttctca agccttagac
    38761 gaacattgcc gttcgctacg caatcatatt gagggattgt ctaagaagaa ctacagtgca
    38821 ttattaggca ttaaaagccc ggattttgta ctgatgttta ttccgataga accggcttat
    38881 attgaagcga tgaagcacga tccgcaactg tttaactttg gctatgaacg caatgtgatt
    38941 ttggtttctc acaccacctt aatgccgatt ttacgcacgg tcgccaattt atggcggatt
    39001 gaacgaggca acagcgaggc tcgtgaaatc agcgaaaaag ccggcgaaat ttacaaccaa
    39061 gtgtgtgcgg ttgccgatcg gttagctaaa ttaggtaaca cgctaaatac cgcaaataat
    39121 caatacaatc aaaccgttac ctcgttagtg ggacggcaag gcttactggg caaagtggaa
    39181 cgattccaac atctttcaag caaagcaagc caaattgtgc cgcaggttga gctgattgaa
    39241 aatgaggtgg atactattaa attggaaatg gtatcgagag aattattgga agaatagtca
    39301 aatctcttta ttccctacaa aaatatgggg tgatttgaaa tactaaagaa aataataaaa
    39361 tgctaaaaaa actattaatc atcgacaacc acgactcttt taccttcaac ttggtggatt
    39421 tactccgtaa gcttgatgtg ccggcgaaag tggtgctggt tgaagagctt gacctcaatg
    39481 aggtggagca ttttagccat attttgattt cgcccggccc tgatgtgccg agagcctatc
    39541 tacaaacctt tgcgatgttg gagcgttatc atcaaaccaa atcaattcta ggcgtttgct
    39601 tggggcatca aacgatttgc gagttttttg gcggcaagtt gtataaccta aacgatgtta
    39661 gacacgggca gcaacgcacg ctcactcaaa ttgagcctaa ccccatattt aaaggtttgc
    39721 ctaagcagtt gaaagttggg ttgtatcact cttggggcat tttgcaaaat tcgttgcaaa
    39781 atacaccgct tgtaccaacc gcagtttgcg atcaaaatgt gttaatggcg tttaaacacc
    39841 aacatttgcc gatttttggc gtgcagtttc acccggaatc ttttatcact gaatttggtc
    39901 aacaaatgtt ggcaaattgg cttgagatta cacaagattt ttagcgtgaa atccgctata
    39961 atccgtcagt tatttaccct tttaaaatct gtaggggcga aaaatttttc gccttactta
    40021 atatgcaaga gataatttaa atgaaagatt cgattatcaa taaattagaa agtttaagtg
    40081 aacgccacga agaactacag gcgttacttg gcgatgcctc aattatttcc gatcaagaca
    40141 aattccgtgc ttattccaaa gaatattcgc aattagaaga agtggttggc acctttaacc
    40201 gctggaaaaa gctgaacaat gatattgaag aggctcaatt attactcgat gatcctgata
    40261 tgaaggatat ggcagcggaa gaaattgcgg aaaataaagc cgaaatcgag aatcttgagc
    40321 aacatttaca aattttatta ttgccgaaag atccgaatga tgaatacaac gccttccttg
    40381 aaatccgtgc cggaacgggc ggtgacgagg ctggtatttt tgccggtgat ttataccgta
    40441 tgtacagccg ttattgcgaa agtaaacgct ggcgaattga agaaatgtcg gcaaatgaga
    40501 gtgaacaagg cggatataaa gagatcatcg ttaaaatttc aggcgaaggc gtttacggtc
    40561 agcttaaatt tgaatcgggc ggacaccgtg tacaacgtgt accgaaaacc gaatcacaag
    40621 ggcgtattca cacctctgct tgcacggtag cggtaatgcc ggagttgccg gaaagcgaga
    40681 tgccggaaat caatccatct gatctgcgaa ttgacaccta ccgctcatcg ggtgcaggcg
    40741 gtcagcacgt taataccacc gactctgcag tgcggattac tcatatcccg accgggattg
    40801 tggtcgagtg tcaagatgag cgttcacagc acaaaaataa agccaaagcg ctggcagtgt
    40861 tagcctctcg gattgtacaa gttgagcaag aacgccaagc cgcagagcaa gcggataccc
    40921 gccgtaactt acttggctca ggcgaccgtt cggataaaat ccgcacctac aactacccgc
    40981 aagggcgtgt gactgatcac cgtattaacc tcacggttta tcgtttagac gaagtgatga
    41041 acggcaaaat tgatgaattg atacaaccga ttatcactga atatcaagcg gatcagttag
    41101 cggcgttgtc ggagcaaaat taattttatt gtaagggtac actgtgtgtg cctgccaaat
    41161 ataaatttgc aaaattttga ctatttttga tcgcttgtag tttctaaaaa gtttaaaaat
    41221 ttgaggaaaa caaaatgaga aagttaggtt tattagcagt atttacttta gtattatcag
    41281 cctgttcaaa ttcaacaaaa attgaacaaa ccattctttc caagcaggat atcgtaggct
    41341 cttgggtatg cgctattaaa tacgatgatc taaaagtaag cactttagat ttttctgaat
    41401 ttaaagctaa tggcgaaatg acgaatttcg gtgatatttc tgatgagaat tttgagccca
    41461 ttaaatttac ttatgtaaca ggagataaag ggaagtggga cttaaaagga aatcgattag
    41521 tgattgatta tgatctttct gaacgtaaag taaaaagaac aacaccaaaa aaatttttag
    41581 agttcttgaa acaggaagag cgtaaagcct caaaaacagc taaaaaactc cttaaatatg
    41641 aacaagggat tttcaatatt ctgagtgatc agaaaaatac tgaaaacagt aaaataatat
    41701 tagatatttt gaagtttggt cattcaagaa tggcgattca gcaaaatatg ggagacaaag
    41761 tttattcagg tggttgtgta acagc
//
LOCUS       DANLXK010000006        40417 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.006, whole genome shotgun sequence.
ACCESSION   DANLXK010000006 DANLXK010000000
VERSION     DANLXK010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 40417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40417
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            20..1006
                     /gene="pheS"
                     /locus_tag="PXD88_000247"
     CDS             20..1006
                     /gene="pheS"
                     /locus_tag="PXD88_000247"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL6279868.1"
                     /translation="MQHLKDLTNKAREALDKIDQNLEALEEFRVEYFGKKGHFTTLMQ
                     ELRNIAAEERPAIGAKINEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKT
                     ELGGLHPVSITIERVVKFFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFW
                     FDANRLLRTQTSGVQIRTMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKE
                     ANFTELKGLIHDFLKAFFEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMV
                     HPNVLRNVGIDPEEYSGFAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            1054..3441
                     /gene="pheT"
                     /locus_tag="PXD88_000248"
     CDS             1054..3441
                     /gene="pheT"
                     /locus_tag="PXD88_000248"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL6279869.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            3499..3795
                     /locus_tag="PXD88_000249"
     CDS             3499..3795
                     /locus_tag="PXD88_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL6279870.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            3834..4355
                     /locus_tag="PXD88_000250"
     CDS             3834..4355
                     /locus_tag="PXD88_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6279871.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            4371..5414
                     /gene="degS"
                     /locus_tag="PXD88_000251"
     CDS             4371..5414
                     /gene="degS"
                     /locus_tag="PXD88_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL6279872.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            5423..6097
                     /gene="cmk"
                     /locus_tag="PXD88_000252"
     CDS             5423..6097
                     /gene="cmk"
                     /locus_tag="PXD88_000252"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL6279873.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            6189..7856
                     /gene="rpsA"
                     /locus_tag="PXD88_000253"
     CDS             6189..7856
                     /gene="rpsA"
                     /locus_tag="PXD88_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL6279874.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
     gene            7985..8266
                     /locus_tag="PXD88_000254"
     CDS             7985..8266
                     /locus_tag="PXD88_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL6279875.1"
                     /translation="MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIE
                     VRGFGSFSLHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            8303..8590
                     /locus_tag="PXD88_000255"
     CDS             8303..8590
                     /locus_tag="PXD88_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL6279876.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            8594..9790
                     /gene="lapB"
                     /locus_tag="PXD88_000256"
     CDS             8594..9790
                     /gene="lapB"
                     /locus_tag="PXD88_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL6279877.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            9814..10506
                     /gene="pyrF"
                     /locus_tag="PXD88_000257"
     CDS             9814..10506
                     /gene="pyrF"
                     /locus_tag="PXD88_000257"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL6279878.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            10589..10900
                     /gene="yciH"
                     /locus_tag="PXD88_000258"
     CDS             10589..10900
                     /gene="yciH"
                     /locus_tag="PXD88_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL6279879.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            11003..13165
                     /locus_tag="PXD88_000259"
     CDS             11003..13165
                     /locus_tag="PXD88_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL6279880.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELLEYAQ
                     NVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPSFQQYQT
                     WAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRLRMAIWQ
                     KADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAMLAAQQLG
                     IVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIKPEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
     gene            13214..13290
                     /locus_tag="PXD88_000260"
     tRNA            13214..13290
                     /locus_tag="PXD88_000260"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13248..13250,aa:Met,seq:cat)
     gene            13517..13978
                     /gene="rimP"
                     /locus_tag="PXD88_000261"
     CDS             13517..13978
                     /gene="rimP"
                     /locus_tag="PXD88_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL6279881.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            13999..15495
                     /gene="nusA"
                     /locus_tag="PXD88_000262"
     CDS             13999..15495
                     /gene="nusA"
                     /locus_tag="PXD88_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL6279882.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            15480..18047
                     /gene="infB"
                     /locus_tag="PXD88_000263"
     CDS             15480..18047
                     /gene="infB"
                     /locus_tag="PXD88_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL6279883.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            18132..18512
                     /gene="rbfA"
                     /locus_tag="PXD88_000264"
     CDS             18132..18512
                     /gene="rbfA"
                     /locus_tag="PXD88_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL6279884.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            18515..19438
                     /gene="truB"
                     /locus_tag="PXD88_000265"
     CDS             18515..19438
                     /gene="truB"
                     /locus_tag="PXD88_000265"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL6279885.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            19441..20521
                     /locus_tag="PXD88_000266"
                     /pseudo
     CDS             19441..20521
                     /locus_tag="PXD88_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(20559..21083)
                     /gene="tadA"
                     /locus_tag="PXD88_000267"
     CDS             complement(20559..21083)
                     /gene="tadA"
                     /locus_tag="PXD88_000267"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL6279886.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(21165..22973)
                     /locus_tag="PXD88_000268"
     CDS             complement(21165..22973)
                     /locus_tag="PXD88_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL6279887.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(23175..24098)
                     /gene="nlpI"
                     /locus_tag="PXD88_000269"
     CDS             complement(23175..24098)
                     /gene="nlpI"
                     /locus_tag="PXD88_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL6279888.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(24179..26329)
                     /gene="pnp"
                     /locus_tag="PXD88_000270"
     CDS             complement(24179..26329)
                     /gene="pnp"
                     /locus_tag="PXD88_000270"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL6279889.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(26591..27871)
                     /gene="phoR"
                     /locus_tag="PXD88_000271"
     CDS             complement(26591..27871)
                     /gene="phoR"
                     /locus_tag="PXD88_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL6279890.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(27874..28560)
                     /gene="phoB"
                     /locus_tag="PXD88_000272"
     CDS             complement(27874..28560)
                     /gene="phoB"
                     /locus_tag="PXD88_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL6279891.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(28644..29414)
                     /gene="pstB"
                     /locus_tag="PXD88_000273"
     CDS             complement(28644..29414)
                     /gene="pstB"
                     /locus_tag="PXD88_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL6279892.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(29424..30272)
                     /gene="pstA"
                     /locus_tag="PXD88_000274"
     CDS             complement(29424..30272)
                     /gene="pstA"
                     /locus_tag="PXD88_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL6279893.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(30269..31228)
                     /gene="pstC"
                     /locus_tag="PXD88_000275"
     CDS             complement(30269..31228)
                     /gene="pstC"
                     /locus_tag="PXD88_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL6279894.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(31309..32346)
                     /gene="pstS"
                     /locus_tag="PXD88_000276"
     CDS             complement(31309..32346)
                     /gene="pstS"
                     /locus_tag="PXD88_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL6279895.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            32531..34777
                     /gene="parC"
                     /locus_tag="PXD88_000277"
     CDS             32531..34777
                     /gene="parC"
                     /locus_tag="PXD88_000277"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL6279896.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(34848..36200)
                     /gene="lysC"
                     /locus_tag="PXD88_000278"
     CDS             complement(34848..36200)
                     /gene="lysC"
                     /locus_tag="PXD88_000278"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL6279897.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
     gene            36763..38193
                     /locus_tag="PXD88_000279"
     CDS             36763..38193
                     /locus_tag="PXD88_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL6279898.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
     gene            complement(38257..38586)
                     /locus_tag="PXD88_000280"
     CDS             complement(38257..38586)
                     /locus_tag="PXD88_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL6279899.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            38782..40284
                     /gene="ppx"
                     /locus_tag="PXD88_000281"
     CDS             38782..40284
                     /gene="ppx"
                     /locus_tag="PXD88_000281"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL6279900.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
BASE COUNT        12136 a         7548 c         9087 g        11646 t
ORIGIN      
        1 tgagtttaga ggataggtaa tgcaacacct aaaagattta actaataaag cacgtgaagc
       61 tttagataag attgatcaaa atttagaggc tttagaagag tttagagtcg aatattttgg
      121 taaaaaaggg cattttacaa cgttaatgca agaattacgc aatattgcag cggaagaaag
      181 accggcaatc ggagcaaaaa ttaatgaagc aaagcaagtt gtgcttgatg tgttaaatgc
      241 caaaaaagaa gaatgggaac aagctgtatt aaatgcaaaa ttagctaatg agagcattga
      301 tgtttcactg ccggggcgta aaactgaatt aggtggtttg caccctgttt ctatcactat
      361 tgagcgtgtg gtgaaatttt tctctgaatt aggttttacc gtagcaaacg gacctgaaat
      421 tgaaaccgat tactataact tcgatgcgtt aaacattccg gatcatcatc cggctcgagc
      481 ggatcacgat acgttttggt ttgatgccaa tcgtttatta agaacccaaa cctcgggtgt
      541 gcaaatccgt acaatggaaa atgtaaaacc gcctatccgt attgtggcac cggggcgtgt
      601 atatcgtaat gactacgacc aaacccacac accgatgttt caccaaatcg aattgttata
      661 tgtggataaa gaagcaaact ttaccgagtt aaaaggctta attcacgatt ttctcaaagc
      721 attctttgaa gaagatttac aagtgcgttt ccgcccgtca ttcttcccat tcactgagcc
      781 ttctgcagaa gtagatgtaa tgcgtcaaaa cggcaaatgg ttagaagtgt taggttgcgg
      841 tatggtacac ccgaatgtgt tacgcaatgt agggattgac cctgaagaat atagcggttt
      901 tgctgtggga atgggcgtcg agcgtttaac gatgttacgc tacaatgtca cggatttacg
      961 ttcattcttt gaaaatgact tacgtttctt aaaacaattt aagtaataca agcggttaaa
     1021 aatttagaaa attttacaaa taggatagaa ataatgaaat tcaatgaatc ttggttgcgt
     1081 gaatgggtaa acccagcaat tagcacagaa cagttatgcg accaaattac aatgttaggg
     1141 ttagaagttg acgatgtaga gccggtagct ggtgcgtttt cgggtgtagt tgtgggtgaa
     1201 gtggtggaat gcgcccagca cccggatgct gacaaattgc gtgtcactaa agtgaatgtt
     1261 ggtggcgaac gtttattaga tattgtttgt ggtgcaccaa actgccgtca aggtttaaaa
     1321 gtggcttgcg ctgttgaagg tgcagtgcta ccgggcgatt tcaaaattaa gaaaaccaaa
     1381 ttgcgtggtc agccttcaga ggggatgtta tgttcttact cagaacttgg gattaaagaa
     1441 gatcatagcg gtattattga attacctgct gatgcaccta ttggtcaaga tttccgtgaa
     1501 tatttaaatt taaatgatgt ggcgattgaa atcagcctta cgccaaaccg tgccgactgc
     1561 ttaagcattg ccggcattgc tcgtgaagtg ggggtgatta accgtgtcga tgtgaaagct
     1621 ccaactatta cagatgtaaa agccacgatt tcagataaag tttcagtgga attacaagca
     1681 ccggaggctt gccctcgcta tttagcccgt gtggtgaaaa atgtgaatgt caaagcgaca
     1741 tcgccacttt ggttacaaga aaaattacgc cgttgtggga ttcgctcaat cgatccaatc
     1801 gttgatatta ctaacttgag ccttttagaa ttagggcagc caatgcacgc ctttgatgca
     1861 gcgaaaattg aaggtggcat tcaagtgcgt atggcaaaag aaggcgaaga attggtattg
     1921 ctagatggca caaacgctaa attacaatcg aataccttag tgattgctga tagcaaaggg
     1981 gcattggcta tggcaggtat tttcggtggc gaagccagcg gggtgagcga gaatacgaaa
     2041 gatgtggtgt tagagtctgc attttttgct ccattagcga ttaccggtcg cgctcgtcaa
     2101 tatgggttac ataccgacgc atcacaccgt tttgagcgtg gggttgatcc agaattaact
     2161 cgtcaagcaa tggagcgtgc aacggcatta ttactggaaa tttgcggcgg tgaagcaggt
     2221 gaaattgtgg aagccgtgag ccaagaaaac ctaccaaaac gcaatactgt cacgcttaga
     2281 cgcagtaaat tagattcggt gattggtcat catattgacg atgcaacggt aaccgatatt
     2341 ttaacccgct taggcttgaa cgtaacattt gcggataata gttggacggc aattgctcca
     2401 agttggcgtt ttgatattga aattgaagaa gatttaattg aagaaatcgc gcgaatttat
     2461 ggctacaaca gtatcccaaa taattcgcca cttgctcatt taacgatgaa aggtacgccg
     2521 gaaaaattac tggaagcaaa ccgtattcgt atggcattgg tagatagtga ttaccaagaa
     2581 gtgattactt atagctttgt tgatccgaaa aaacaatcat tattgcaccc acagcaagaa
     2641 gccttgattt taccaaaccc gatttcaagt gaaatgtcgg caatgcgtgt ttctctttta
     2701 accggtttgt tggacactat cgtgtataac caaagccgtc agcaaaaccg tgtgcgtatt
     2761 tttgaagcag gtctacgttt tattccggat agcaatgcgg aatcaggcgt gcgtcaagaa
     2821 tttgtttttg gtgcggcgat tgtaggcgat aaacgtccgg tacattggga aaacaaatca
     2881 gaagcagccg atttctttga tttaaaaggc gatattgagc gtattctttc tttaacctct
     2941 atccgccacg atctgcaatt tgtcgcaaaa cagttcccag cattacaccc ggggcaatcg
     3001 gctgcgatta tgcttgatgg caaagaaatt ggttttatcg gaactgttca cccgtcaatt
     3061 gtgcaaaagt ttggcattaa aggcaaaccg attgtatgtg aaattctagc atcagctatt
     3121 gcagagcgtc cggttacaca agcgggcgaa atttctaaat ttcctgcaaa taaccgtgat
     3181 attgcggtag tggttgatga atctgttcct gcaggtgagg tgttagaggc ttgtcgtaaa
     3241 gctggtggta ataaattagt ggcagtaaat ttatttgacg tttaccgtgg ttcgaattta
     3301 gaaagtggta agaagagttt agccattagc ttaacggttc aagataatga aaaaacatta
     3361 gaagaaaatg aaatcaatgc ggtaattcaa gcggtattag ctgaattagc aacacgtttc
     3421 aatgcggtac ttcgtgatta atcagtaaaa tatggctgat ttattttatc agccataaca
     3481 ataaactaag gataaatgat ggcgcttacc aagattgaaa ttgcagaaaa cctgattgaa
     3541 aaatttgggt tagaaaagcg tgtagcgaag caatttgttg aattgttctt tgaagagatc
     3601 cgatcctccc tcgaaaatgg tgaagaagtg aaattatctg gttttggtaa tttttcactg
     3661 agagaaaaaa aagctcgtcc aggaagaaat cctaaaacgg gggaaaatgt ggctgtttca
     3721 gcccgtcgag tagtagtttt taaagctggg caaaaattac gagaacgtgt tgagcaagct
     3781 agctcccaat cataggggca gttatattag ttagatttaa tgtggagtaa taaatgaaat
     3841 taaccaaacg gtggctttcc ttaggttgtt tgttagctat tacagcgatg ttagtggctt
     3901 gttcaagttc agatacaacc tctaagtctc aagtaaaaag taaagtttat cgttcaatat
     3961 accaatcaga cctttctgat cctattatgg caattagtcg attaagtgaa catcaacacg
     4021 aatggaaagg cactcgctat cgtttaggtg gcaatagcaa ggctggcatc gactgttctg
     4081 gttttatgca agtcactttt aaagatcttt ttgggataga tttgccgaga accaccacag
     4141 agcaggctaa ggctggtgag cgtatatcca aagacgaatt gcgtacaggt gatttagttt
     4201 ttttcaagac agggcgtggt ccaaatggga aacacgttgg tgtttatgta aaaaatgggc
     4261 aatttcttca cgcctcaaca aagggagggg tgatttattc tgatttggat tcgccatatt
     4321 ggtctaaggc tttctggcag gctcgtcgtt tataatttag ggtaacatac atgctgaaaa
     4381 aaatcggaca agcggtcata tttggacttt tttgtgcaat tttaattttg tttgtagctc
     4441 caattattca gagtaaaggg agttcgtttt cattatcagc attcactcaa aaagagattg
     4501 taagctacaa tgcagcggtt aaaatagcct cccccgcagt cgttaacgta tatagccgaa
     4561 attttagttc tgaaaatgaa acatttgaag ttaagaattt aggttcgggt gtgattatga
     4621 gtagcgatgg ctatatttta actaacaggc atgtgattga agatgcggat caaatcgtga
     4681 ttgctttgca aaacggtgct atttcgacta atgtaaaatt agtcggcgat gattctttaa
     4741 ctgatttagc tgttttaaaa attgagggtg agaatttacc tactattcca caaaatccgg
     4801 agcgcaaact acaaattggc gatgtggtgt tggcaattgg taatcctttg aatttaggac
     4861 agagcattac gcaagggata gtcagtgcta ttgggcgaaa aaccttaaca gaaagtggta
     4921 gacaaaattt tattcagaca gatgtttcca ttaatcaagg gaactcaggt ggtgctttaa
     4981 ttaatactgc tggtgagcta ataggtatta acactttgcg ttttgggaaa aatacgaatg
     5041 aattgtcaga gggcctaaat tttgcgattc ccattaatct ggcgaatcaa attatgagta
     5101 agatcattaa agatggccga gttattcgtg gctattttgg ggtaagtaca gatttgcttg
     5161 acaccgcaaa aatgcaaggt tatgaaaaag gggtgatcat tgttaatgta gataaaaatg
     5221 ggccagccgc aaaagcgggg attcaagcag gtgacttagt gcttaaagtc ggagatattg
     5281 aggcattctc tccttctcaa atgatggaag agcttgctga aatgaaacct tatactacag
     5341 taaaagtatt ggttcaacgt gatgaacaat tacttaactt tgatgtaact attactgagt
     5401 tacagactca atagggtaga aaatgaaaaa aatagtgatt acagttgatg ggccgagtgg
     5461 tgcaggtaaa ggaacgttat gtcatgcatt ggctgaaaaa ttagggtttg attttttaga
     5521 ttctggagcc ttataccgga ttactgcatt aagcgcaatt aaaaaagagg ttccccttga
     5581 tgatgaggaa aaactagcgg aagttgggcg taatcttgat attcaatttt tgccagaaaa
     5641 tggcgagatt caggtgattt tggaaggaga aaatgtaggc gacttaatcc gaacggcaga
     5701 agcaggtcaa aatgcctcta aagtcgctgc tttccctttg gtacgtgaag cacttttaga
     5761 acgccaaaga gcctttagta gcgaaaaagg tctgattgca gatggacgag atatggggac
     5821 agttgtgttt cctgatgcac aaattaagct gtttttagat gcaagtgccg aagaacgcac
     5881 aaaaagacgt gtaaaacagt tgcaagaaaa gggatttaat gctaactttg acgagatttt
     5941 agccgagata aaagaacgtg attttcgcga tagaaatcga tcagtcgcgc cacttgttcc
     6001 ggctaaagat gcgttgctgt tagattcaac gcatttatca attgaagatg tgattaacca
     6061 agcattaaat catatcgctc aatacattaa attttagttt gttgcttcac ataggatttg
     6121 tgtagctttt attatcaacc ccgtttaaca ggacgttaga tggatgttta tttttaagaa
     6181 gatttattat gtcagaatta tcgtttgctc aactacttga agaatcattt gcagctacac
     6241 cacgtttagg tgatgttgtt aaaggtactg ttgttgctat ccaaaaaggc ttagttattg
     6301 ttgatacagg tttcaaatct gaatctgcaa tcgatgcctc agaatttact aacgcacaag
     6361 gtgaattaga agttcaagtg ggtgatgaag tagatgttgt tcttaaagct gtagaagacg
     6421 gttttggtgc aacagtagtt tctcgtggtg atgcaaaacg taacgaagct tggattgctt
     6481 tagagaaagc atttgaagaa caagctacag ttatcggttt cgtaaatggt aaagtaaaag
     6541 gcggtttcac tgttgaatta aacggtgttc gtgcattctt acctggttca ttagttgata
     6601 ctcgtccggt tcgtgattct ttaaacctag aaggtaaaga gtacgaattc aaagtaatca
     6661 aattagatca aaaacgtaac aacgtagtag tatctcgtcg tgctgttatc gaaacagaaa
     6721 gcaaccaaga tcgtgatgcg gtattagcaa acttagttga aggttctgaa gttaaaggta
     6781 cagttaaaaa cttaactgac tacggtgcat tcgtagattt aggtggcgtt gacggtttat
     6841 tacatatcac agatatggct tggaaacgtg ttaaacaccc aagtgaagtg gttaatgtag
     6901 gcgatgaagt tactgttaaa gtattaaaat ttgacaaaga caaaactcgt gtatcattag
     6961 gcttaaaaca attaggtcaa gatccttggg ctgtaattgc tgaaaaccac ccggtaaaca
     7021 gcaaattaac tggtaaagta actaacttaa ctgactacgg ttgcttcgtt gagattttag
     7081 acggtgttga aggtttagtt cacgtttcag aaatggattg gacaaacaaa aacattcacc
     7141 catctaaagt ggttaacgta ggcgatgtag ttgaagtaat ggtacttgaa gttgatgaag
     7201 aacgtcgtcg tatctcatta ggtttaaaac aatgcaaagc aaacccttgg gaacaatttg
     7261 cggcaactca cagcaaaaat gataaagtat caggtaaaat caaatcaatt actgacttcg
     7321 gtattttcat cggtttagaa ggtggtattg acggtttagt tcacttatct gacatttctt
     7381 ggaatgtttc aggtgaagaa gcagttcgta actacaaaaa aggtgatgaa gtagaagctg
     7441 ttgttctaca agttgatgca gtgaaagagc gtatctcttt aggtatcaaa caattagaat
     7501 ctgatccttt cacaaacttt gtagatggta ctaaaaaagg tgcaatctta acaggtaaag
     7561 ttgtagaagt tgatgctaaa ggcgttaaag ttgaattgga aggtggcgtt gaagcattta
     7621 ttcgtgcaaa cgaagcaact gctgagcgtg tagaagacat cacttctgtt atttctgttg
     7681 gcgattcaat cgaagcgaaa tacaccggtg ttgatcgtaa atctcgcgta gttaacttat
     7741 ctgttcgtgc aaaaaacgaa gctgaagaat cagcagcaat tgcacaagtg aacaaagagg
     7801 aagttgttgt acctaatgca tttgctgaag ctttcaaagc agctaaaggc gaataattag
     7861 tatagactaa tctaaaatgg gtatgttttg aacataccca tttaaactta gaaatgccat
     7921 tttgaatact tattttcata ataaatgatt attcaaaata gaattaattt ttggtagaaa
     7981 taatatgact aaatctgaat taattgagag tttagcatct aaaaatccaa gtttaccaat
     8041 taaaatggtg gagcattgtg taaaagagct tttagagcag ttaacggcta ctttagaaga
     8101 aggtgaaagg atagaagtaa gaggatttgg tagtttttct ctacattatc ggcagccgcg
     8161 tttaggtcgc aatcccaaaa caggagaaag tgttctttta ggcgcgaaat atgtaccaca
     8221 ttttaaagct ggtaaagatc taaaagagag agttgatctg ctttaagtct tattaattca
     8281 ataatcgtag taaggagatt atatgattaa gtatatttta ggtattttaa ttgtgattgc
     8341 agttattatt gtcgctgtta cgattggagc caataatgat caacttatca cctttaacta
     8401 tatttttgct cagagtgaat tacgcttatc aacgttagtt gcgattttat ttggcttagg
     8461 attgattctt ggttggttgg taacgggtat tttttactta aaaattaagt ttcaaaacgt
     8521 tgctttaaat cgtcgtgtaa agcgccaagc tcagcaaata actgaattaa cgactccaaa
     8581 ggctgaataa tcaatgcttg aattattgtt ccttttattg cctattgcag cactatatgg
     8641 ctggtatatg ggacaacgta gtgcaaagaa ggatcaagaa accgctagta ataagttctc
     8701 tcgtgagtat gttacggggt taaattttct tttatctaat cagcaggaaa aggcggtgga
     8761 ccttttcctc tctatgttac aaaaacaaga atccgaaaat catattgcat ctgaatccca
     8821 atttgaagcg gagttaaccc taggtaatct tttccgttca agaggtgagg tagatcgtgc
     8881 cttacgtatt caccaaacat tagtgaatag ccctcattat tcatttgatc aaaaattatt
     8941 agcaaaacag caattagcta aagactttat ggttgcaggt ttctatgacc gtgcagaaaa
     9001 ttattacatt tcattagttg atgaacctga gtttgctaaa tattctttat ctcagcttgc
     9061 tgttatttac caaaaaacca gagaatggaa aaaagcgatt aatgttacag aaaaacggct
     9121 tcgaatagag ccggatgcag ataaaatacc gctttcacat ttttattgtg aatatgcgca
     9181 aggggttaaa tttgatgata aagcggcatt tattgaatcg ttaaataaag cgttagaata
     9241 ttatcctcaa tccacacgcg cttctataat attaggtgat ttctatttag aagagggaga
     9301 atatctaaga gcattaagct atttcgaaca gattcttgtg caagaccctg attatattag
     9361 cgaagtgctt ggacgaatta agcaaagcta tatggctctt gaggacttaa atggctatga
     9421 gttatttctc attcgagcaa accgagtaaa acataatagt agtgtagata ttgctttaac
     9481 tgaatttatt gaagaaaaag atggtatcaa tgctgcacat tctaaactat accagcagtt
     9541 gagtacttat ccgaatttaa ttacttttca ccgctttatt cgctatcaag cagattttgc
     9601 ggaggaagga aatggtaagg aaagcttagt tttattacat aatatggtgg gaaatcagat
     9661 aaaacgcagc ttccaatatc gctgtttaaa ttgtggttat caaagttatc gcttaatgtg
     9721 gcaatgtcct tcttgtaatc aatgggaaaa aattaagccg gtacaaagta tcgaaggtat
     9781 tattcaataa agaaagaatc tgaggaattg aaaatgaaca ataaagtaat tgttgcgtta
     9841 gactatgaaa ctgaacgtga agcattagaa tttgtggatt tggtcgatcc gtcgctttgt
     9901 cgtttaaaag taggcaaaga aatgtttaca accttaggca caaattttgt caaacaatta
     9961 cacgaacgta aatttgatgt attccttgat ttaaaatatc atgatattcc aaatacggtt
    10021 gctcgagcag tacgttctgc tgctgatctt ggtgtgtgga tggttgactt gcatgcttct
    10081 ggtggtttag ccatgatgga agaggcaaag aaaattttgg agccttatgg caaagaggca
    10141 ccattattaa ttgcagtgac ggttctaacc agtatggaag atttggattt gcttcaaata
    10201 ggtattaatg cttcgccgat ggaacaagtt attcgtttag cacatttagc acaacgggct
    10261 ggtttagatg gcgtggtatg ttctccacaa gaagttgagg tattacgtac ccattgtggt
    10321 caagatttta aattagtgac cccaggaatc cggccaaaag gaacagattt tggggatcaa
    10381 cgccgagtga tgacacccaa acaagcagta gaaacaggct cagatttttt ggttattggt
    10441 cgtcctatta cccaagctca agatccgctt gcggtattaa aatctattaa ccaatctatc
    10501 agttaattca ttgcattttt aatgaaggcg gaaaaatttc cgcctttttt aatcaaacaa
    10561 gcggttattt ttgaggaaaa atttgtaaat gacattagtc tattcaacgg aaacaggcag
    10621 aataaagtcc gaagtaataa aagaagaacg ccctaaaggg gatggtattg tgcgtattca
    10681 acgtcaaaca agcggtagaa aggggaaagg tgtttgcctt atcaccggtc ttgatttaga
    10741 ggataaagcc ttaaattctc ttgcttcaga gcttaaacgt aaattgggtt gtggtggctc
    10801 atttaaagat ggagtaattg aaatccaggg cgataatcga ggattcatta agcaaatctt
    10861 agaacagaaa ggtttcaaag tgaaactggc aggtggttga gttttaaaca attatcagct
    10921 ggcagttttt aaataacttc attttatttg aaacttcatt cctacttttc tgcctaaaac
    10981 tcacgattaa ggagaaaaac taatgtggaa gaaaacgttg attgctgtat ttttagcaag
    11041 ccaatatgct tttgcggtag gaaccgggaa agaaccatca aaaagttata ctgaaacaga
    11101 attaaaacaa ttaaaaaatg attggttagc gatttatcaa aaagagctac agtatgcaga
    11161 aaatttgcgt ttaaaacaga gagaaaattt tcagcaaatt aattatttgg cagatgcagc
    11221 gattagtcag aagaatttat cactttcaac ggagcagata attcagcgtt tattactaac
    11281 cttagcgggt tatccgttgg agatgaaagc tgaatggaag ctgctaaatg ctaaaataac
    11341 gttaaaacaa gccacagaaa gtgaagttaa agcatttatt tcaaaatatc ctgattcttt
    11401 gtatcaaagg cagttacaga acttgatgtt tgagctgctc tatcgtgaac agaaatttcc
    11461 ggagttactg gaatatgctc aaaatgtaaa acagagtagt cttgccgacc aatgccgttt
    11521 attttctgct cgttatgaac tggcagcaag taaagctcaa atcaatccgg aagtttctca
    11581 agtaactgag caaaaagcag aaaatgcaga actgcttgct ttggtgcaag agtttgatcg
    11641 cttttggctt gctacgccga aattaacttc tgattgtgcg aatttagaaa gttattggcg
    11701 ggatcagggg cttaaaaccg atgaaaaaat gcgtttgaaa gcggtcgaat taattaaaca
    11761 aaatgcaaat gcagaattgg cgaatttggc ggcaaatgta aataatgaga atttgaaaat
    11821 ctggctatct tccgttgaaa aggtagcgaa taatccggca gatttgcaaa attttatcga
    11881 aaatcaaccg cttgattccc cattttatgc tgataataaa gcgattattc agcaactctt
    11941 tgctaaatat gtgcgaactt tatcggaaaa tatggagaac ccgagtttcc agcagtatca
    12001 aacgtgggca gagaagtatc aactttccag cgaggaaatc aatggctgga aaaatgcttt
    12061 tatcactcga ttttttgata acccagaacc aacattccaa ttttggcgtg atgagcaaat
    12121 caagttgctc aagacagaca atttaactga acgccgttta cgaatggcaa tttggcaaaa
    12181 agcagattta aatgagtggc tggttctgct atctcagcag gcgaaagaaa aagcagaatg
    12241 gcgttattgg gctgcgaaag aggagaaaaa cgaagcgaag cgtaaagttg attttgaaag
    12301 cttagctaaa gagagaggct tttatgctat gttggctgct caacaattag gcattgttta
    12361 ccaaatcccg atgcttgaag tgcctgaatt gacacaagca cagcttgaat tgtatgcaaa
    12421 ccaattagct cgtattcaag agttgcgaga gctagggcag tttgaccagg caagaaaaat
    12481 atggattgac tggataaaaa acatcaagcc ggaagcaggt gaaaatacac caactaaaat
    12541 ccagttagcc ctgataaaat atgccaagga taaaaattgg tatgatttgg cggtggaagg
    12601 tacaattcaa acaaaagcct ttgattatct tgatttgcga ttaccgaatg cctattcgga
    12661 ttggttcgat ttacatctgc aagataaaaa aatcagcaaa acgtttgctc aggcgattgc
    12721 tcgtcaagaa agtgcgtgga atgctcaggc tcaatcgcac gctaatgcga gagggctaat
    12781 gcaactgtta ccgacaacag cacaaaaaac cgctaaagat aacggtttaa ccttcaaaga
    12841 tggcaatgat ctctttcaac cgtttaacaa tattatgtta ggcacaaccc atttaatgga
    12901 gttaaacgaa aaatatccga ataatcggat tctgattgcc tctgcttata atgcaggagc
    12961 agggcgtgtt gagcagtggc tgaaacgtag taacgggcag ttagcaatgg atgaatttat
    13021 tgccagtatc ccgttttatg aaaccagagg ctatgtacaa aatgtgctgg cgtatgacta
    13081 ctattatcaa atgctctata gcgatataaa tgataaaaat ggattaaaaa tgttctatca
    13141 agaggaatta acaagaaaat attaaaaaat gcttgtgttt ttgtgtagaa ccgctataat
    13201 gcaccccatc agacgcgggg tggagcagct tggtagctcg tcgggctcat aacccgaagg
    13261 tcgttggttc aaatccggcc cccgcaacca gttttaagct cacagctttg gttaaagttg
    13321 tgagttttgt tttatatgct gtagcaaatt tgcaaaaaat ttggcaaaaa agaccgcttg
    13381 ttgtggttgc tacagcaaaa aacaaaccgc ttaaagcccc acggtttccc gtctggggct
    13441 tttttgcgga aattggtaca gcattaacgt atcaaagctg gtttatccgg ctttttttat
    13501 atttggagat tatgacttgg caactttaga acaaaaatta gaagatttag tgctcgattc
    13561 tattgaagca ttaggctttg aattagtcgg cattgaatgc caacgtgcag gccgtttttt
    13621 aacggtgcgt ttatatattg ataaagaagg tggcgtgacg attgatgatt gtagcgatgt
    13681 cagccgccaa gtgagtgcga tttttgatgt ggaagatccg attgccgata aatataactt
    13741 agaggtttct tcaccagggt tagatcgtcc attatttacc gttgcccact atgagcgttt
    13801 tatcgggcaa gatgtagtga ttcatttacg cattccgatg ttcgatcgcc gtaaatggca
    13861 aggtaaaatc aaacaagtag aaggtgattt catcacttta acggtagaaa atgaagatcg
    13921 ccagttcgca tttggcaata ttcaaaaagc aaatttagtt ccggttttta atttttaaga
    13981 taaaggtaaa ctgacaaaat gagtaaagag attttattag ctgcggaagc agtttcaaac
    14041 gaaaagcaat taccaaaaga ggcaattttt gaagccttag aaaccgcttt aaccattgca
    14101 accaaaaaga gccgtgattt agatattgac gtgcgtgtgg tggtagatcg taaaaccggt
    14161 gatttccaaa ctttccgtcg ttgggctgtg gttgaaaatg tgaataatat gacccgtgaa
    14221 atcagcttag aagcggcaca atttgaagat ccaaacgtac aattaggcga ttttattgaa
    14281 gatgaagtag agtctatcga gttcggtcgt gtggcgattc agacttttgg tcaggtagtc
    14341 aaaaccaaaa ttcgtgaagc ggagaagacg aaaatcattg atgaattccg ttcggattta
    14401 ggcaaaatta ttcttgccac tgtgaaaaaa gtaacccgtg ataatatttt ccttgagtta
    14461 caaggtaaat cagaagatat caaaggcgaa gcggtcattg tgcgtgaaga tatgatccca
    14521 cgtgaaaact tccgcccggg tgaccgtgtg cgtggtgtgt tatacgaaat caagcctgaa
    14581 tcaaaaggac ctcagctttt cgttacccgt gctaaaccgg tgatgttaga agagctattc
    14641 aaattggaag tgcctgaaat tggcgaaggc gtaattgaga tcaaaggttc agcccgtgat
    14701 gtcggctctc gtgcaaaaat tgccgtgaaa acccacgata aacgtattga cccggtaggg
    14761 gcttgtgtgg gtatgcgtgg tgctcgtgtt caagctatca gcaatgaatt aggcggcgag
    14821 cgtgtggata tcgtactttg ggacgaaaat ccggctcaat ttgtgattaa tgcaatggct
    14881 ccggcagatg taagctctat tgtgattaac gatgaaactc actcaatgga tattgcggtt
    14941 gaagcgaaaa atctggctca agctatcggt cgtaacggtc aaaacgtgcg tttggcgaca
    15001 caattaactg gttgggcatt aaatgtaatg accgttgaag agctaacgaa gaagagcgaa
    15061 gaagaagatg gtaaagtcat caatttatta acttctgctt tagaaattga tgaagaattt
    15121 gctcaagttt taattgaaga gggctttacg tctcttgaag cgattgctta tgtgccggtt
    15181 gatactttaa cggcgattga cggtttagaa gatgaagatt tagtcgaaga attacaatct
    15241 cgtgccaaaa atgcgatcac gaaaaaagcg ttagaagaag agaagttatt aaaatcagct
    15301 caaattgaag aaaaattatt aacgcttgaa ggtatggatc gccatatcgc attcaaatta
    15361 gctgaaaaac agattacgac tcttgaagaa cttgcagagc aaggtgttga tgatttagcc
    15421 gatattgaag aactttcaga agagaaagct ggcgagctaa ttatggcagc acgccaaatt
    15481 tgttggttca actaagcaaa gaggataata aaatgacaga agagaaaaaa acactttcgc
    15541 ttggtggcgc tcgcaaagcg agtaaagtga atacaaccac aaccagtggt aaagtaaaag
    15601 cggttgaagt aaaagagaaa aaaccgaaaa ttgatgcaaa agcattgcaa gaaaaagcag
    15661 caaaagaagc tgccgcagcg aaagctagag ctgaaaaaga agcagctgaa aagttagcca
    15721 aagaaaaagc cgaagctgaa gctaaagaga aagctgcaaa aaaagcagca gaatcgaccg
    15781 ctagtaaacc gatttctgtg ccggtaatgc caagcagcaa agcaaaagaa gaaaaaccga
    15841 aagcacaaca ggtacagcca aaacaagaga aagcggttga tcctgaaaaa gaagctaaac
    15901 gcaaagaaga agctgagtta cgccgtaagc aagaggaatt agctcagcaa aaagcggaaa
    15961 tggaggcaaa acgtgctgca gaaaatgccc gccgtttagc agaaattgct cgtgaagaag
    16021 cggaagataa cggcaacgaa gattttgatg atgagcgttt tacttcttct tatgctagag
    16081 aggctgagcg tgataatgac cgccgtagtg agggaaatcg tggtcgtaac ggcaaaggca
    16141 atgtggctaa agcgaaaaaa ggcggacgtg aagaggataa aaacgaacgc agtgcagatc
    16201 gtcgcaacca taaagaagta aaaggcaaag gtaaacaagg taagaaaggt gcagctttac
    16261 aacaagcctt taccaaacca gctcaagttg ttaaagctga tgtggtgatt ggtgaaacta
    16321 tcactgtggc tgaattggct aataaaatgg cagtgaaagc gactgaaatc atcaaaatga
    16381 tgatgaaaat gggtgaaatg gtgacgatca accaagttat cgaccaagaa accgcacaat
    16441 tagtggcgga agaacttggg cataaagtga ttttgcgtaa agaaaatgag ttagaagaag
    16501 cggttttaga agatcgtgat actcacgcag aaaaagtaac ccgtgcaccg gtagtgacta
    16561 ttatgggcca cgttgaccac ggtaaaacct cgttacttga ctacattcgt aaagccaaag
    16621 tggcggcagg tgaagcaggt ggtattaccc agcacattgg tgcataccac gttgaaaccg
    16681 atgacggcaa gatgatcact ttcttagata ccccggggca tgcagccttt acctcaatgc
    16741 gtgcgcgtgg tgcgaaagca actgacatcg ttgttctcgt cgttgcggct gatgacggtg
    16801 taatgccaca aactattgaa gctatccagc acgccaaagc agcgggtgcg ccattagtgg
    16861 tagcggtgaa taaaattgat aaaccggaag cgaaccctga ccgtgtagaa caagagttac
    16921 tacaacacga ggttatttct gagaaattcg gtggcgatgt gcaattcgtg ccggtatctg
    16981 cgaaaaaagg tatggggatc gatgatttac tagaagccat tattctgcaa tccgaagtgc
    17041 ttgaattaac cgcagtaaaa gacggtatgg caagcggcgt ggtaatcgaa tcttacttag
    17101 ataaaggtcg tggccctgtg gcaactatct tggttcaatc cggtacgcta aacaaaggcg
    17161 acattgttct atgtggtttt gaatacggac gtgtgcgtgc aatgcgtgat gaaaacggta
    17221 aagatgttga atcagcaggt ccgtctattc cggtagaagt attaggctta tcaggcgtgc
    17281 ctgctgccgg tgatgaggca accgtcgtgc gtgatgagaa gaaagcccga gaagtggctc
    17341 tttatcgcca aggtaaattc cgtgaagtaa aactggctcg tcagcaaaaa gctaaactgg
    17401 aaaatatgtt cagtaatatg gcagccggtg atgtggcaga attgaacatc attgttaaag
    17461 cagacgtaca aggctcggta gaagcgatca gccaatcctt aatggaactt tcaaccgatg
    17521 aggtgaaagt gaaaattgtt ggttcaggtg taggtggtat taccgaaact gatgcaacct
    17581 tagccgcagc ttctaatgct attatggtcg gctttaacgt gcgtgccgat gcctctgccc
    17641 gccgtgtgat tgaaaacgaa aatatcgatt tacgttacta ctccatcatt tatgagctat
    17701 taaatgacgt gaaagcagca atgagcggta tgttacagcc tgaattcaaa caagaaatta
    17761 tcggcttggc agaagtgcgc gatgtgttcc gccacccgaa atttggggcg attgccggtt
    17821 gtatggtgac agaaggtatc gttaaacgta acaacccaat ccgtgttctg cgtgataacg
    17881 tagtaatttt tgaaggcgag ttagaatctc tccgccgttt caaagatgac gtatctgagg
    17941 tgcgtaacgg tatggaatgt ggtatcggcg ttaaaaacta caacgacgta aaagttggcg
    18001 accaaatcga agtgtttgaa gtggttgaag taaaacgtac tatttagcct aattttgtgt
    18061 aggggcgtat tgcatacgcc ctttgtattt tttagggcgt gaagcatcac gcccctataa
    18121 aagagaaaaa tatgtccaga gaatttaaac gtagtgaccg tgtggcacag gagctacaaa
    18181 aagaagtggc ggtgatttta caacgtgagg taaaagatcc tcgcattggt atggtgactg
    18241 tttctgatgt ggaagtatca agagatttgg cgtatgccaa aatttttgtg actttcttat
    18301 ttgataacga tgctgaagct attaagcaag gtatgcaagg cttggagaaa gcaagcccct
    18361 atattcgaac ccttttaggt aaagcaatgc gtttgcgtat tgtgcctgaa ctgcgtttta
    18421 tctacgatga atcgctagtc gaaggtatgc gtatgtctaa ccttgtgtct agtgtaatca
    18481 aaaatgacga agaaaaacat aaagaggact aattgtgtct agacctcgca aacgtggccg
    18541 tgatattcac ggcgttttct tattagataa accacaagga atgtcttcaa acgatattct
    18601 gcaaaaggta aagcgaattt tccaagcaaa taaagccgga cataccgggg cgttagaccc
    18661 tctcgcaacc ggaatgctgc cgatctgttt aggtgaagcg accaaatttt cgcaattttt
    18721 gttggattcg gataaacgtt atctcgtcac cgcaaaatta ggcgagcgaa ccgatacttc
    18781 agatgcggaa gggcaagtgg tggaaaccaa agcagttgca gtgacaaaat ctcaaatttt
    18841 ggctgctttg gagaaattta gaggtgatat tttgcaagtg ccgacaatgt tttcggcctt
    18901 aaaacacaac ggcaaaccct tgtatgaata tgcccgagca gggattacgg tggagcgtga
    18961 ggctcgcccg attacgattt ttgaactaaa tttcattgaa tacaaggctc catttttaac
    19021 ccttgaggtg cattgttcta aaggtactta tatccgaact ttggtcgatg atttaggcga
    19081 agagttgggc tgtggtgcac acgttacgat gctacgccgt acagcagtgg cagattatcc
    19141 gattgaaaaa atgatgagct atgcagattt gcaaaattta gccgaaaatc aaccgcttgc
    19201 agagttagac cagcacttat tgccgatgga tacggcagtt tctgcattag caaaaataaa
    19261 tttaagttca gagcaaacta aagcggtggg ttttggtcag agaattagat ttgataatct
    19321 gaaccaactt tatggtttgg tacgtttata ttcagaagat gaacaatttc tcggtgtggc
    19381 agaaatcacc aatgatactg tgattcgtcc taaccgaatg attaacttaa cggaataaga
    19441 atgaaatcga taatttttac cttaccttta gcgattatca ctttagcctt agccggttgt
    19501 tcaagtgata atcaagaaag ttatgccggc ttaaacttag atgctaaata cagtaaatct
    19561 cgctcggtca gtcattttaa tgattatgtg cattttctga aacagaaggc agcaggggca
    19621 ggagtgtctg caaaaacctt aaatgctcag aaattcattc attacaacgc cagagcggtg
    19681 cagttagatc aacagcaagc tgcacgaaga cgtgacccga atgtaccgcc tccgccacca
    19741 aatccaagtt ttaaacaaag tattaactca agcgaaggtg gatcaggcaa gtgaacgttg
    19801 gtatgaatat aatagccagc ttacccatgc cagccaaaaa tatggggtac aaaaagagta
    19861 tattttggca ctttggggaa tggagagcag ctttgggcgt aaccaagggg attttgatgt
    19921 actttcggtg ttggcaaccc tcgcctttga tggtcgccgt gagaagttat ttacgcaaga
    19981 atttgtgaat gcgatgaaaa tgctcgatga cggcacaatt aaacgctatg aattgcttgg
    20041 atcttgggca ggagcgatgg gacaaactca atttatgcca acttcttact taacctatgc
    20101 agctgatggc aataatgacg gtaaaaaaga tatttgggag aatgaagccg atgcatttgc
    20161 ctcgattgcc aattatcttt caacagtagg ttgggataat caactacctt ggggtgttga
    20221 ggttaaatta gcttcaccga tggatttaag tttcgccggt cttgaaacca acaaagcgaa
    20281 aacattggcg gaatggcaag ccttaggtat ttatttagct tatccgaatg gacaagaatc
    20341 ggcaaaatta gctcaattac acggcaaaga ggtttggttg attcgtccgg ataaagaagc
    20401 gggaagagcg tttttagttt ctaataattt ccgtacttta atggattgga ataaatcgaa
    20461 taaccttggt atcagtatcg gaaaatttgc cgatcgaatt ttagcttcag ttggtcaata
    20521 atcgaataaa agcatagtag caaagcctat ctatgctttt attttatcaa agcgtcgcct
    20581 ttcttctgca aacgacgttg cttaaaaaaa tcactgatct tttggctaca ttctctgccc
    20641 aatacattgc catgcacttc taagaaatgg ttcattttat aatcttcaaa cagatgatag
    20701 cgtgaaccta ccgcacctgt tttataatca cttgccccaa aaaccaatcg cttaatccga
    20761 ctatgtaaaa ttgcaccggc acacattggg caaggctcga gcgtaacata aagggtacaa
    20821 tctaacagac ggtaattccc taaagtttgt cctgcttgac gaattgcctg catttcagcg
    20881 tgtgcagatg gatcacagag ttgaatggtt tggttccagc ctctgccgat aatctgttgg
    20941 tttttatcaa ccagtactgc cccaaccggg atttcgcctt ttgcttcggc taaatcagcg
    21001 agatcaaggg cgtattgcat aaaggcgatg tcttgctcgg agatctgaag tggacaagaa
    21061 gtttgatttg gtttgataaa catagttgca aaaaattgag tttttttgac cgcttgtaaa
    21121 atgccccacg agggtggggc atcgcttact tcgcttagtg tcgtttagtc acgacgacca
    21181 cgtttttcac tgaaacgttt ttctttaaag ccacctttgc ggtctttatt gaaacccccg
    21241 tctcggcgac caccacgatc attacgatcg ttaccacggc gaccacgacc ttcaaatgga
    21301 tttgcattac ttgcactgtt tgcagagcca agtaatgtca tctgcattgg tttgcttaat
    21361 acacgtgctt tgtgagcgaa atgttgtacg agatgatttg gcattccttg cggcaactca
    21421 atggttgagt atttatcata aagtttgata tgcccgatgt aacggctgct gatatccccc
    21481 tcgttggcaa tcgctccaac aatatgacga acttccacac cgtcttcacg ccccaattca
    21541 atgcggtata aatccattgc cacaccattg ttttcacggt gttcacgacc gttacgacga
    21601 tcgtttcgct cattgcggtc acgtccacgt tcagaacggg cagcacgcac aaccggatcc
    21661 ggtggcagaa tcagtttttg tttttcttgc agtaacatca tcatcgccgc tgctaattct
    21721 tcgtggtctt gatccgcagt aaataaatct tccaacaatt cacgatattt ttctaaatcg
    21781 tgatgttcta actgcttaga aatgcgggct ttgaatttct cacggcgttt ttccattaaa
    21841 atttcgtggt ttggaatcgc cacttcatta attggttttt tgattaaatt ttcgatattg
    21901 cgtaataagc ggcgttcacg aggctcaaca aacagtaagg cacgacctga acgaccggca
    21961 cgaccggtac gtccgatgcg gtgaacataa gattcttctt ctaacggaat atcgtagtta
    22021 ataaccaagc tgattcgctc aatatcaata ccacgggcag caacatcggt ggcgactaaa
    22081 atatctaaac gaccggagcg taatttatct aaggtttgct cacgggcttg ctgggtcata
    22141 tcgccgttta atgccgcagt acggtagccg ttgcgttcac acaattcggt aatatcaata
    22201 gtaccggttt tggtgcgggt aaagatgata gcagcatcaa attcttctac ttctaggaaa
    22261 cgcaataacg catcgttttt acggaagccg tttaccagcc agtagctttg ttcaatatcc
    22321 ggggctgaac gctcggttgc cttaattttt acctcttgcg gatctttcat aaaacgacgg
    22381 gtaatacggc gaatcggctc cggcatggtg gcagagaaga gagcagtttg atgtgtttcc
    22441 ggtaattcag ccattaccgt ttcaacatcg tcaataaagc ccatacgcag catttcatcg
    22501 gcttcatcta acacgatgaa ttttaattcg gataaatcta atgtgccacg gcggatatgg
    22561 tcaagaatac gcccaggtgt acccactact acttgtgagc cttgttttaa agcacgtaat
    22621 tgaatgtcgt aacgttgtcc accataaacc gtcactacac gaatgccttt catatttttt
    22681 gcaaactgct cacaagcatc ggctacttga atcgcaagct cacgggtggg tgccatcacc
    22741 aacatttgcg ggtggcgttg tgttgggtca atttgtgcca acagcggcag cgagaatgcg
    22801 gcggttttac cgctcccggt ttgtgccata ccaagcacat cacgaccggc taataaatga
    22861 ggaatacatt cttgttgaat gggtgatggg tttacaaagc ccatttcatt tacagcatca
    22921 aggattggtt gaggtaagcc taaatcggcg aaagttaaag attcagttgt cataaaaaac
    22981 catttgtttg gaacgcacaa agcagaaaat atcgactatt tttctgcaca gccattaatg
    23041 aaaattatat tgttgaaatt taggaagaaa tgaaataaca aagcaagtga tgctttaaaa
    23101 atcccctgag tataagcggt taaatttaca aaattttttg cgaaattaac cgcttgtatt
    23161 gtcctaatct ttccctattc tttatcaaca acgggagtcg tttgagtcat accacgaatt
    23221 tgtgataact caaacagggc aaaacgatac tcaacgaagt taaacacttg atttgcaaga
    23281 gcaagacgaa agaggctgat tgcctcatct ttatgatcta atttgagttg ttgttttgct
    23341 aagtagaaat acgtttctgt cagtatttct gcatattgtg agctattttc cttagcgtca
    23401 cgttccatta tagcacgaac ttgagctaaa ttgagcttcc ctaaaaaata atttacgata
    23461 tttgttcccc agtaatccga agaaagatta ttagctcgct tttgtaaatt atttttagct
    23521 tctgttggtg taaattccag ctcattaaaa tagagccata atgctcgata aggatctttc
    23581 ttatcttctt cataaaaatg gagaagatca cgctgggctt cagaatatct gccgctataa
    23641 tagaaagcca aacctcgatt gagataggtg tagctatatt cccgatctaa ttccaatacg
    23701 gcattaaacg catcaatcga actgtcgtaa tcgccttcca gcagcagata cagccccata
    23761 tagttataag ctgccgccat acgttgattg agcgaaatgg cttgagcaaa atcataacgg
    23821 gctaacgacc ataaacctaa actgtcgtaa ataacgcctc tttcaaaata gaggtctgct
    23881 tgctcagagg gcgttaatgg ggcttcttcc aatacttggc tgagtcttac caccattgcc
    23941 tcttgttcaa agcgaagttg aggattaagt tctgccaatg ctaagttttt aattgaaacc
    24001 aaatcggcat accgactggt acagccgctt agcattaaaa cagaaattaa attcagtaat
    24061 aagaaacgga ttcgaaacaa cttaaaaagt tgtaccatta cagcatatcc ctcaattaag
    24121 gaaaattaaa aactgaataa cggacactca aagtccgtta ttcgccttta ttattgaact
    24181 agaaattatt ttcttgttct gtttctacca cattttcagc tacagtttct tctgcatttg
    24241 cctcgttggt attattgatg tctttcatcg tcagacgaat gcgtccttga cggtcaattt
    24301 ctaccacttt cacttgtact tcttgaccaa cggttaagta gtccgctaca cgctcaacac
    24361 gttcgttggt gatttgtgaa atgtggacta aaccttcttt gccacctaag atggaaacga
    24421 atgcaccgaa gtccaccaca cgggttactt taccgttgta gatttggttt acttccactt
    24481 cggcaacgat ctcttcaata cgagccatta ctgctttcgc tgcattgccg tcagttgccg
    24541 caattttcac cgtaccgtca tcatcaatgt cgatagaagt attggtctct tcggttaaag
    24601 cacgaattgt tgcaccgcct ttaccaatca catctttgat tttcttcgga tcgatcttca
    24661 ttgtgtgaat gcgtggggca tagtcagaaa tatctgcacg aggtgccgga atggcttgtt
    24721 ccattacacc taaaatgtgc attcttgcac ctttagcttg gtttaaggca atacgcataa
    24781 tttcaggggt gatcccttcg attttgatgt ccatttgcag cgcagtcaca ccggtacggg
    24841 ttcccgctac tttaaagtcc atatcgccta agtggtcttc atcacctaag atgtcagaaa
    24901 gtaccacgaa tttctcgtct tctttcacga gccccattgc gataccggca accgctgctt
    24961 tgattggcac acctgcgtcc atcaacgcaa gagacgcacc acacacagat gccattgaag
    25021 aagaaccgtt agattcagtg atttcagaca ccacacgcac tacatacggg aactcttcag
    25081 cggttggcat cacggctaat acgccacgtt ttgctaaacg accgtgaccg atttcacggc
    25141 gttttggcga gccgatacga ccggtttcgc ccacagagta tggagggaaa ttgtagtgga
    25201 ataagaaacg gtcagatttt tcgccggtca attcgtcaat gatttgggca tcacgctctg
    25261 tgcccaatgt tgctactgct aatgcttggg tttcgccacg ggtgaaaaga gcagaaccgt
    25321 gggtgcgtgg taacacactg gtgcaaatat ccaatgcacg cacggtatcc accgtacggc
    25381 cgtcaatgcg tggttcgcct gcaataatac ggctacgcac gatttggctc tctaatgcgg
    25441 tgatgatgtc gatgatagtc ccttcagaaa cagtttcatc ttctgcggta agttgtgcaa
    25501 tcacctctgc tttaatcgca tcgatttgct cgtaacgaac ttgtttttct acgatacgat
    25561 aagcatcgcc aaggcgtgtt tctgctaatg cttttacttt gttgattaaa tctgtatttg
    25621 gctctggtgc aacccaatcc caacgtggtt tgcccgcttc tttaacaaat tctttgatgt
    25681 tttcgattac aacctgttgt tgctcgtggc cgaacaccac cgccgctaac atttgctctt
    25741 cggttaagat atccgcttca gattccacca tcaacacggc tttgtctgta cctgaaacca
    25801 ctaaatctaa gcggctgatt ttttgctcgc tggtggttgg gtttaatacg aattgatcgt
    25861 tgataaaacc gacacgagcc gcaccgattg gaccgttaaa cggcacgccg gataatgaaa
    25921 gggcagccga tgcaccgatc atcgcaacca gatcaggact gatttgtggg tttaccgata
    25981 ctacggtcgc aatcacttga atttcgttaa agaaaccttc tgggaaaagt ggacgcacag
    26041 gacggtcgat caagcgagcg attaaggttt caccttcgct aggacgtcct tcacgtttga
    26101 agaaaccgcc cggaatacga ccggctgcgt aagtacgctc ttgataatct acggttaatg
    26161 ggaagaaatc ttgcccttct tttacgtctt ttttcgctac tacggtaaca aatacggttg
    26221 tgtcgtccat acttgccatt actgctgccg ttgcttggcg tgcgatagca ccggtttcta
    26281 aggtcacggt gtgctgaccg tatttaaact gttttacaat tggagtcatt gaaattttcc
    26341 ttttaaagaa tttactatta ttgtcgtttt atttctctaa attgcgacta gcaaaaaggc
    26401 ttttaagtaa aacatttttg atagccgcct ctcaataaca agaaataaaa cttgtctagt
    26461 atagcgtgat ttttataaaa aatcgcctat tattttgatc ttgcacctca gttataaaga
    26521 aattcaaaac ttcagtgtaa aatggggatt agtttgtgaa aagccttgtg aaaatagttt
    26581 gattgcatcg ctattttttt attagaggta gtttaaaact aaatctgctt cctttaccgg
    26641 cttcactttc aatttccagt gtggaatggt gctgttcaag agcgtgtttg acaatagcca
    26701 gacctaaacc gctaccgccg gttttgttgc tacgagattc gtccacacga tagaaacgtt
    26761 ctgtcagatg ggtaatatga tgggcatcga taccaatacc gtcatcttgc acgctgaaaa
    26821 tcgcagtatt cggctcttga ttatcacgtt gacaacatat ttgaatggta actccttcac
    26881 cggcgtgccg tattgcattg taaattaaat ttgatacagc gctttggagt tgctcttgat
    26941 ctccccatac cgttaaatta ggctcaatat caaacagtat ttgctgattt tggcttaaaa
    27001 tctcggtatt tttttgtatg gcggagatta acgccgacat ctggacctca ttgtgttcgg
    27061 aatcattgga atgctcgatt ttaaccaaaa gtgagagttg gcgaagcagg ttagtcatac
    27121 gttgactttg ctctttcatc gcattgagcg ctttttgctg taatgccata ttatgcggct
    27181 cgttttccag catttccaaa taaccttgta atatggtaag aggtgttcgc agttcgtggt
    27241 tcatatttgc caaaaaggtt tgtcgtgagt gcataaggcg gacaaaagag gttacatctc
    27301 gtgcgacaat aagtctggag ttactgtcat atcgattgag attcaattca atatagcgtt
    27361 tattatgagt cagcagtacc aatgggcgat ggtgtcgttg ttggcggaaa tagcttttaa
    27421 attcaggata aaaaatcaca ttaaaaatgc ttttatttga ttttttgtcc caataaaact
    27481 caaatagctc ttgtgcaaca ttattgcacc aagaaatctc cccgttttct tggcaaataa
    27541 tgatcgcatc gggtaagtat tgaatatgct tatttaattt tgataacaga cgtaaggttt
    27601 tgattttatc ttggcgtaaa cgttcgtgat agaatgcggc actttgagat aaatgctcca
    27661 ttgtcgttac ttttgacctg ccgctttgct cattaggtct gagtaactga aggagagaag
    27721 attcggtgtg gtgatgccaa ataagtagaa ccagtaaaca aaaactaaac cagaaaaaat
    27781 aagcagggaa aaacagattg aatacgccgg caacggctgc tgccagcaaa agttccaata
    27841 aaaagtgttt aagtgagagc ttaactttca ttattagtcc tgaaaatggt tggaaaaacg
    27901 gtatcccgag ccacgtacgg tttgaatata acgctcaaaa ccatagggtt caagactctt
    27961 acgcaatcgc cgaatataag agtctaccgt gcgatcctca acataaatat cattacccca
    28021 aataaaatca agcaactgtt cacgacgata cactttttca gggtgagtca ttaaaaagtg
    28081 aagcagttta tattccgtgc cgcttaattt cacttcctgt tcggcaacca aaacccgttg
    28141 tgcctgttga tcaagaatca atccgtctat attgatgaga ttgcttggcg gatcatagct
    28201 tcgccgccat actgcttcaa tccgggcaag caacacctgt ggtgaaaacg gtttggtaat
    28261 gtagtcgtct gcaccggcat tcagaccggt aatacagtct tcttcgctac tgcgggctgt
    28321 tagcataatg attggaattt tttcggtttc aggctgtttt tttaggtatt taattaaatg
    28381 gatacccgaa cgccccggca tcatccaatc cagtaaaata agctcgggtt tttcgcccag
    28441 tttattgata gcactttggt agtcttccgc ttcaattacc tgatattgtt tgctgagata
    28501 gagacttagc atttcacgaa tagcacgttc gtcttcaacg atcagaattt tgttattcat
    28561 tcttcctctc cgatgcggtg tgacaagcgg tcgatttatc gcagaaattt gcaaattttt
    28621 tactaaaacc gaccgcttgc agattacccc attttacctt taatgtaatc ttccgtctgc
    28681 cggaattttg gtttgtcgaa aatttgtttg gtatcaccga attcaatcag ctcgcctaga
    28741 tacatataag cggtatagtc agaacagcgg gctgcttgct gcatattgtg ggtaactatc
    28801 gctaccgtgt agtcgtgctt gagttcgttg ataagttctt cgattttcat agtcgaaatc
    28861 gggtcaagtg cggagcaggg ctcatccagc agtaacacct cgggtttcac tgcaatacct
    28921 cgtgcaatac agagccgttg ctgttgcccg ccggagagac tgtcaccatt ttggtttaat
    28981 ttatgcttta cctcattcca taaagccgct ttggttaatg cccactctac acgatcgttt
    29041 agctcggatt tcggcaattt ttcaaacaga cgaataccaa aagcaacatt atcgtaaatg
    29101 gacatcggga atggggtcgg tttttggaaa accataccga ctttggctcg aataatcgaa
    29161 atatccgtat cggaggtgag tagattctct ccatcaagat tgatttcccc cgttgcacgt
    29221 tgattcgggt agagctcaaa cattcggttt agggttcgca gtaatgttga ttttccacaa
    29281 ccggaaggac cgataaatgc ggtcacttta tttttggcaa tacgcatatt gatatttttc
    29341 agagcgtgga aatcgccata ataaaaattg aggttgttaa tatgtaattt tgtctctaaa
    29401 tccgttggta acatatagag tccttatttt gttttgctga aatacagacg agtgatgata
    29461 ttaagagaaa gcacaaacag agtaataagc attgcacctg cccaagccaa tgtattccag
    29521 tcagcgaacg ggctggctgc gtattgataa atcaccacag ggaggtttgc cattggtgca
    29581 ttcatatcta aagaggcaaa ctggttggat aatgcggtaa acaatagcgg tgcggtttct
    29641 ccggaaatac gggcaacagc gagcaacacg ccggtaataa tgccggagcg ggcggcacga
    29701 taagagatca ttgtaattac cctccatcgt gggcagccga gagccgcagc tgcttcacgc
    29761 agattattag gcacaagatt gagcatactg tcggtagttc gaacaacaat cggaatcact
    29821 aataccgcca atgctaatga gcctgcccag cctgaatagt gtttaacctg tgcgacataa
    29881 atcgcataaa taaataagcc gataataata gaaggagcag agagcaacac atcattcaaa
    29941 aaacgggtga attttgccaa tttggtataa cgcccgtatt cgctcaagta agtgccggct
    30001 aaaataccga ttggtgttgc aatcagtgtt gcggtactga caatcagtat agagccgaca
    30061 attgcattac gtaatcctcc tgtttcattt ggtgcaggag tcgggcgggt aaacagttcc
    30121 caagacagtg cagggatacc tttttggagt aaagtaacaa taatccagac cagccaaaat
    30181 aagccaaata atacagcgga ataggcaaga cttaacatca agacattttt tatttttcgg
    30241 caataaaagc gtcggttttg gtaatttttc attctcgttt tccttcctgt ttacccattc
    30301 gtgcgattaa taaacgtgaa gcggctaaaa caatcgaagt aataaggaac agaattagcc
    30361 ctaggctcat caacgctgat ttttgtaatc cgccggcttc attaaattca ttggcgatag
    30421 cagaagcgat ggaggttgaa ggggaaaata ccgaatcagg tagcataaag gcattaccga
    30481 tcacaaaggt aactgccatt gtttcgccta atgctcgacc taacccgagc ataattgcac
    30541 cgattactcc ggttttggtg taaggtagca cgactttcca aataacttcc caagtggttg
    30601 agcctaaacc gtaagcagac tctttcagta aaggcggtac aacactgaaa acatcacgca
    30661 taattgaggc aataaaggga ataatcataa tcgccaatac caagccggca ctgaatagcc
    30721 cgatcccgaa aggagctccg ctaaaaagca taccgataaa gggaagctga ccaaatgtat
    30781 ctatcaaata cggttgcaca tattcttgaa ataagggtac aaatacaaac agcccccaca
    30841 taccgtaaat aatagaggga atagccgcta gcatttctac cgctgtgccg acagggcgtt
    30901 ttagccattg cggtgcaagt tcggttaaga aagtcgcaat gccgaacgag accggaacgg
    30961 caatgactaa tgcaatgccg gcagaaatca atgtgccgat aatcggcact aatgcaccgt
    31021 atcggtcatt cacagggttc cactcgtttt cccataggaa tgataccccg aatcggctta
    31081 atgcttccca actgccaagc aataatgaaa ccagcaccac caccaacaag gcaaaaacca
    31141 gcaaagcaaa gaaacgggtt gtgtgatgaa ataacccctc tacccaagga tggtttaagc
    31201 atttgttatc aattttatgt ttatgcatag tgacaactct tttgcaaaat gttgtgaaaa
    31261 aacgaccgct tgttgttagt taagctccat acaagcggtc gttttgcatt agtagagcga
    31321 atttccttgt ccatctttaa cttccgtttt ccattgagtt tggattttct ctactacatt
    31381 atccggtaga ggcacataat ccagttcggc agccgcatct ttaccgtgct taaatgccca
    31441 gtcgaagaat ttaaataccc ctttagtttg ctctggtttg tcgctatgtt gatgaatcaa
    31501 gataaaactg gcggcggtaa tcggccaggc tttttctccc gcttcgttgg ttaaaataac
    31561 gcccataccg gctgtttggc tccaatcggc gttagcagcg gcagcagcaa acgtttcacg
    31621 ggaaggctga acaaatttac catctgcatt ttgcatagaa acccaagcca gagcattttg
    31681 tttagcatag gcatattcta cgtaaccaat agaatacttg agctgtttca cataagctgc
    31741 gacaccttca tttccttttc cgccttgtcc gaccggccat ttcaccgatt ttccttcgcc
    31801 gactttctcc ttccattcgg cagagacttt agaaagatag tttgtccaac cgaaagttgt
    31861 gcctgaaccg tctgagcggc gtacgactaa aattgttttt gccggcaggg cgatatcttg
    31921 attaagtgcg acaattgccg gatcgttcca ttgtgtaatt ttgcctagga atatatcggc
    31981 aagaacttta ccggacagtt tcagttcgcc cgatttaagt tcaggaatat tgacaaccgg
    32041 tacagttccc ccaatgatgg cgggaaattg caaaagtttg tgttctgcta atgtttcgcc
    32101 tttcatcggg tcatcagaag caccgaaatc aattgttttg gcaataattt gttgctgacc
    32161 gccaccggaa ccgatagatt ggtaattgat tttattaccg gtctcttttt catataaacc
    32221 tgcccatttg gcgtagatag gataagggaa agaagcaccg gctcctgtga tggtttgagc
    32281 atttgctgcg acagaaagtg aaaaagaaat gcctaaaacg gtaagtagtt taaatcgttt
    32341 ggcaatcata ttgttctcct taaagttagc gtgagttaat ttcacgtgct tagtgtagaa
    32401 aaagaatatg acaaaatgat gacaatggta aaaaaatcag aaaaaacgac cgcttgtgtt
    32461 tcaggctaga ctaaacaggc taaatcgtag aaaatagccc tcgttttttt aatataaata
    32521 tcgataaaaa atgaccacag aaatcaatta tgaaggcatt gaacagatgc cgattaagcg
    32581 ttttaccgaa gatgcttacc tcaattattc gatgtatgta attatggacc gggcattgcc
    32641 gtttattggc gatggcttga aaccggtgca acgccgtatt atttatgcga tgtcggaact
    32701 tgggctaaac gcctcggcaa agtataaaaa atcagcccgt accgtggggg atgtattagg
    32761 taaattccat ccgcacggtg atagtgcctg ctataaagca atggtgctaa tggctcaacc
    32821 gttctcttac cgctatccgt tagtggacgg acaaggcaac tggggggctc cggacgatcc
    32881 gaaatccttc gctgcaatgc gttataccga atcgaaactg tctaaaattg cagaaatttt
    32941 attgggcgag ttagggcaag gaacggtgga ttatcagcca aattttgatg gctcgttgga
    33001 agaaccgaaa tatctgccgg ctcgtttacc gcatattttg ttgaatggca cgatggggat
    33061 tgcggtggga atggcaaccg atattccacc acacaatatt aatgaattgg ctgatgccag
    33121 tgtgatgttg ctggataacc cgaaagcaac gcttgatgat gtactaagcg tggtacaagg
    33181 gccggattac ccgacagagg ctgaaatcat cacaccaaaa gcggaaattg ccagaatgta
    33241 tgagcagggg cgtggttcta ttaaaatgcg tgcggtgtgg aaaaaagaag agggtgaaat
    33301 tgtgatttca gccttgccgc accaagcctc tccttcaaaa attattgagc aagtagcaac
    33361 ccaaatgcgg aataaaaaac taccgatggt ggacgatatt cgtgatgaat ctgaccacga
    33421 gaacccgatt cgcattgtga ttgtgccacg ctctaatcgc attgattttg atgcgttaat
    33481 ggatcacctg tttgcgacga ccgatttgga gaaaagctac cgagtcaata tgaatatgat
    33541 tggcttagac ggcaagccgg cagtgaagaa tttgctgact attctcaatg agtggctgag
    33601 ttttagacgt accactgtca ctcgccgcct gaattaccga ttagataaaa ttttaaaccg
    33661 cttgcatatt ttagacggtt tgatgattgc atttctcaat attgatgaag tgattgagat
    33721 tattcgcaat gaagatgagc cgaaagccga gttaatggct cgttttaatc tgaccgatgt
    33781 gcaagcagag gcgatcctga acttacgttt acgccactta gccaaattgg aagagcatca
    33841 attacaggcg gaaaaatccg aactggaaaa agaacgtgat gaattgcaac tgattttagg
    33901 ctcggaacgc cgtttgaaca gcctgatcaa gaaagagatt caagccgatg ccaaagcatt
    33961 tgccagccca cgccgctcac cattggttga acgagcggag tctaaagcga ttgcggaaag
    34021 tgacttgact ccaaccgaag atgtgactgt gattttgtct gaaaaaggct gggtacgttg
    34081 tgcgaaagga cacgatattg atgttcaagc cctaagccat cgagccggag atggttatct
    34141 tgcccacgca aggggtagaa gtaatcagcc tgtggtattt ttagacagta cagggcgagc
    34201 ttatgctctc gatccaactt cactgccttc ggcacgctcg caaggcgaac cgcttacagg
    34261 caaaatcacc ctaccggaag gtgcagtagt gcagcaagtg ctaatggcaa gtccagaaac
    34321 taaagtgcta atggcatccg attcaggtta cggctttatt tgcacctttg cagatttagt
    34381 ttctcgtaat aaagccggca aagcggttat ttctttaacc gaaaatgcaa aagtactgcc
    34441 gccgcaatta ttggaaaatg atgaaaattt atcgcttgta gcgatgagta atgttggcag
    34501 aatgttggtt ttcccggtga gtgaattacc tcaactttcc aaaggtaaag gcaataaaat
    34561 catcaatatt tccgccgcag cggcaaaatc cggtgatgaa tatttagccc gtttattagt
    34621 catcaaacca accaactcgc tggtctttgt gtccggtaaa cgcaaaatca cattaaaacc
    34681 gagcgatgtt gataactacc gtggcgaacg agcaagaaaa ggctcacagc tagtgagagg
    34741 gcttagtacc aattcaacgg tagagattgt tgagtaaaga gaagaagcgg ttagggggta
    34801 aatccaacaa ttttgcccca aataaccgct tgcaatggag ttattgctta ttcaaataag
    34861 cctttgtgaa gcgaacgaac cacatcgtct gcttctgcat ttttcactaa ggtacaaaca
    34921 ttattgctgc ttgctccata gctgattagg cgaatgttgt aattctcaag agtgtggaat
    34981 aattttttcg ccacaccgga ctgagcgtgt aagttgttgc cgataatagc gactaaagcg
    35041 aggtcgcttt ctacttgcac attgcaatat gcgttaagct catcgagtaa ttccgctgat
    35101 aacatatctg cacctgaaga ggctgagccc gttttatcta gggtcaatgc aacgctgact
    35161 tcggaagtgg taatcacatc aaccgaaatt ttgtgtttcg ctaaaatcgc aaatacattc
    35221 gctaagaaac cttgtgcgtg tagcattgaa aggctggaaa gcgtgagtaa aatttggttg
    35281 cggcgtaatg caatcgcacg gaaagtcggg cgtggttgtg gatcacgggt tacccaagtg
    35341 ccgccttgtt ccggtgcttt gcttgagcca acatatacag ggatattgct acgcactgcc
    35401 ggtaataagg ttgctgggtg taatactttc gctccaaatg ttgccatttc tgccgcttcg
    35461 ttaaatgcca ttgtgtcaat gcgttgagcg ttcggtacaa cacgaggatc ggtggtataa
    35521 atccccggta cgtctgtcca aatgagtaca tcgttagcat ttaatacttc tgctaacaat
    35581 gcagcagagt agtctgaacc gccacgtcct aaagtagtgg ttttgccttc atcatcacga
    35641 ccaataaagc cctgtgtaat cacaattttg cctgatgcga ttaatggctt aatcacattg
    35701 tctgattgtt gctgggtttt ctcgtcattt ggtgctgctt ttccataatg gctgtttgtt
    35761 gccacaacgt cacgcacatc tacccatact gccgggtgtc cacgttcaat taataattgc
    35821 gtgaagattt tggtggacat catttcccca tggctgatta actcatcact taaggcagct
    35881 gaagtagcaa ggctggctga ttctgctaat gtttcaatac gttctaataa ttcgtcgatt
    35941 tccgctttaa cggcatcttg atgttgtaat ttttcaataa tattgtattg aatttggcgg
    36001 actgctgcga tgacttcatc acggtgttct ttttcacagc cgttagcaag ttccactaag
    36061 taattggtta cgccagcaga ggcagaaagt accaccacac gagtatttgc atcagcaatt
    36121 acaatattgg cagaagaggt cattgcatca aaatttgcaa cacttgtacc accaaattta
    36181 gccacagaaa gatgagacat aataaaaatt tccttaaaac aaaaatagat aaatattgtg
    36241 ttaggggata ttcggaaagg aaatttgagt agattatacg gttttattgt tgaaccaatt
    36301 aatcagagca ctccatttaa tatggtgaaa taacctatta aatgacagct gataggattc
    36361 aacctattca gccgatgtta attccagtct agtgaattca cacctcggca atcactccca
    36421 tcacttaatt ctcaaacggc cctagttgcc taaaatcaag ttgcctgagt gttgcacctc
    36481 tcccgtaatg gcaagcccat tactcttttt caacagtatt gaaaagtgtg catagaaata
    36541 ccgttttatt aatgttttgt caatgaatat ttaggtaatc caatgctatt taggtaatta
    36601 tttaaaatat agcgataaaa agtaaacata tttctaatgt tgaataaaaa ctcctaaaaa
    36661 atattttgaa atggatcaca aaaccaaatt tatttgattg ttctttaatc ggtttttttc
    36721 tatgcttaag ttactcatta tgaggtattt ttggaggctt ttatgagtac attaacctat
    36781 ttacaaaaaa ttgggcgtgc attaatggtg ccggttgctg cattaccagc agcagcatta
    36841 ttgatgggta taggctattg gattgatccg gacggctggg gaacaaatag ccaattagcg
    36901 gcattgctga ttaaatctgg ggcggcaatt attgataata tgtctattct atttgccgtg
    36961 ggtgtggcat ttggtatgtc aaaagaaaaa gatggggcag cagcattatc cggtttagtc
    37021 gggtatttag taattaccac tttgttgtct ccggggaccg ttgctcagct aaaagggatc
    37081 gcagttgatc aagtgcctgc agcattcggt aaaatcaaca accaatttat cgggatctta
    37141 gtaggggtta tttcagccga aatttataac cgtttctacc aagtagagtt accgaaagca
    37201 ttgtctttct ttagcggtaa acgattggtg ccgattgtgg tgtcatttat cttgctttat
    37261 gtctggccgg ttatttttgg tgctttagtc tcttttgggg aatctatcaa agatatgggg
    37321 gcgttagggg caggtattta tgctttcttt aatcgtttat taattccggt tggattacac
    37381 cacgcattaa actcggtttt ctggtttgat gttgcaggca ttaatgatat tccaaacttc
    37441 ttaggtgggg caaaatcatt ggctgagggc aaagcagtga taggagtaac aggtatgtat
    37501 caagctggtt tcttcccgat gatgatgttt ggcttacctg cggcagcatt agctatttac
    37561 cacagtgcga aaccggctaa gaaaatgcaa gtagcctcta ttatgtttgc tgctgcttta
    37621 gcttcgttct tcaccggcat tacggaaccg cttgaatttg cctttatgtt tgttgcacct
    37681 gtgctttatg tggttcacgc attattaacc ggattatctg tttatattgc agcctcaatg
    37741 gaatggattg ccggtttcgg ttttagtgca gggttggtcg atttagtgtt atcgacacga
    37801 aatccgctgg cagtgcagtg gtatatgtta ttggcccaag gtatcgtatt cgcagtaatt
    37861 tactatgtat tgttccgagt agtgatccaa gcctttaatt taaaaacgcc ggggcgtgag
    37921 gaagatagcg aagtacaaac agtgaatact gtttctcgta gcgaacaagc tgccaaattt
    37981 gttgaagcat taggtggtaa agagaatatt accagcattg atgcttgtat tacccgctta
    38041 cgcctaacct taaatgatac ggcgaaagca gacgaaacca aattgaaagc gttagggtca
    38101 aaaggtaata tcaaattagg cgagaatggc taccaagtga ttttgggacc ggaagcagaa
    38161 tttgtggcag atgcaatgaa aaagctgaat taatctctgc ttaatcacaa gcggtctgat
    38221 ttgcatattt ttttgcaaat cagaccgctt ggctttttat gcttttttat tggttggtgc
    38281 ttgtttgtga gaggccattt tttggcggat ttcacggcgt tgtttggaaa gttccgcatt
    38341 acggatcata taatcatcta ctcgattttc atagtcatca cgcatattgg aaataatcgc
    38401 tcgaacttcc tcgatagaca tttcgtcggt aatatattgc gttaggttat ctaataaaag
    38461 tacacgcttc tgattatctc gaattttgcg atcattatcc gccgtttcac ggtgcagttt
    38521 gttttttaga cgataaagat gcacatattc cagcatatcg tggaatgatt tattcacttc
    38581 agacatatca atctcccttg atgtagtgtt gaattaagta agctcgtaaa tcctattctt
    38641 tttccgtcaa ttcgtcaaaa aaatttatca cattttatga tttaaattaa ttctcgcgaa
    38701 taacgctaaa tttgtagtga tatctagggc tcaaaaatgg taatatctta cttatttcag
    38761 ttattggtac agggtttcat tatgtcatca aatattgctc ctagagagtt tgcagctatt
    38821 gatttaggct cgaacagctt tcatatgatt gtagcccgta tcgtaaatgg ttccattcaa
    38881 gtgctttccc gtttgaaacg gcgtgtacgg ctggcagatg ggcttgatga aaacttagta
    38941 ttaagccaag atgcgattga tagaggcatt gcttgtttag ctttatttgc aaaacgttta
    39001 gaagggttct ctgcagagaa tgtgaaggtg gttggcactt ataccttacg tagagcaatc
    39061 aataaccaag cttttctgga gcaagcgaaa gcagtatttc cttacccgat ttccattatt
    39121 tccggacaac aagaggcgag gctgatttat tcgggcgtta gccataccca acccgaaact
    39181 ggcagaaaat tagtggtaga tattggcggt ggttcaacgg aaatgactat tggtgatgac
    39241 tttaccccga ttcgagcgga aagtcgtcat atgggttgtg tgagttttgc aaaacgcttt
    39301 ttcccgcagg gggaattaac gattgagcgt tttgatagtg cctatcagct tgcaatggaa
    39361 aaaatcgaag atttaatgtg ggagtacaaa gagttaggtt gggactatgc tttaggttct
    39421 tccggtacga ttaaaaccgt ccatcaagtg ctgattgcca atggctatcg tgatggctta
    39481 attacagaaa gccgcctaca gaaaattatt gatatttgcc tagagtttaa atcgttaaat
    39541 gagattaagc tacgaggctt acttgatgaa cgagcagatg tgctagttcc gggcttagct
    39601 attcttttag cactttttca cacttttaga attgatgtat tacgttattc caacggggct
    39661 ttaagagaag gggtaatgta tggtttggag aaaagtttcc aagttgggga tattcgccaa
    39721 cggactgcag aagcgttagc tgagcaattt gctttagata aacagcaagc aaaaagggtg
    39781 gagcatacgg cgttgatttt atttgaccaa atcaaaactt ggaagaaccg ccgccaagtg
    39841 caagatctgc gttcaatgct gaaatgggca agtttattac acgagattgg tattgttgta
    39901 aaccacaata atgtgcatcg tcattctgct tatttgattg caaaccgaga tttaccggga
    39961 tttgattttg aacagcaaac ccttctatcg gtattaatgc gataccacct taaaggattc
    40021 aaacgctcgg atattcgtag tatcaaccgt taccaatgta gagatgtatt aacgttggta
    40081 cgggttttcc ggctagcggt gctattaaac cgttctcgcc aagcgactgt agtgccgaaa
    40141 cagttgaatt tggtgattga aaataatgct tggcaactta cctttgaaca gggcttctta
    40201 gcgaataatc cactgatttc aatagattta gaagaagagc aaaaaatatt ggcgagtaca
    40261 aatcttcagt ttgcggtctc ttaacattta aatgaaggaa gcgaaggctt cctttttcgt
    40321 ttattgcatt cccttttgcg aacaagcggt caaatttagc taattttttg caaaaagtat
    40381 tttttaaaat ttgatcaact tctcattttt gatgttt
//
LOCUS       DANLXK010000007        39064 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.007, whole genome shotgun sequence.
ACCESSION   DANLXK010000007 DANLXK010000000
VERSION     DANLXK010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 39064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39064
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..250)
                     /locus_tag="PXD88_000282"
     CDS             complement(<1..250)
                     /locus_tag="PXD88_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL6279901.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACALSHIALWHLAKQQNLDYIC"
     gene            complement(332..1363)
                     /gene="tsaD"
                     /locus_tag="PXD88_000283"
     CDS             complement(332..1363)
                     /gene="tsaD"
                     /locus_tag="PXD88_000283"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL6279902.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
     gene            complement(1436..2215)
                     /locus_tag="PXD88_000284"
     CDS             complement(1436..2215)
                     /locus_tag="PXD88_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL6279903.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2356..3333
                     /gene="rluD"
                     /locus_tag="PXD88_000285"
     CDS             2356..3333
                     /gene="rluD"
                     /locus_tag="PXD88_000285"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL6279904.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            3413..3535
                     /locus_tag="PXD88_000286"
     CDS             3413..3535
                     /locus_tag="PXD88_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HDL6279905.1"
                     /translation="MKKLVLTILAAATFLTACNTVDGVGEDVEKAGDKIQQAAQ"
     gene            complement(3711..3995)
                     /gene="raiA"
                     /locus_tag="PXD88_000287"
     CDS             complement(3711..3995)
                     /gene="raiA"
                     /locus_tag="PXD88_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL6279906.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQLIKLKEKNEH"
     gene            4175..5116
                     /locus_tag="PXD88_000288"
     CDS             4175..5116
                     /locus_tag="PXD88_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL6279907.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            5212..6099
                     /gene="dapA"
                     /locus_tag="PXD88_000289"
     CDS             5212..6099
                     /gene="dapA"
                     /locus_tag="PXD88_000289"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL6279908.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
     gene            6369..7595
                     /locus_tag="PXD88_000290"
     CDS             6369..7595
                     /locus_tag="PXD88_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL6279909.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            7652..9028
                     /locus_tag="PXD88_000291"
     CDS             7652..9028
                     /locus_tag="PXD88_000291"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL6279910.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(9083..10672)
                     /gene="purH"
                     /locus_tag="PXD88_000292"
     CDS             complement(9083..10672)
                     /gene="purH"
                     /locus_tag="PXD88_000292"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL6279911.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            10844..11113
                     /locus_tag="PXD88_000293"
     CDS             10844..11113
                     /locus_tag="PXD88_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL6279912.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(11200..12645)
                     /gene="dacB"
                     /locus_tag="PXD88_000294"
     CDS             complement(11200..12645)
                     /gene="dacB"
                     /locus_tag="PXD88_000294"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL6279913.1"
                     /translation="MIFKNFTRAFLNKFILSTLLIPSITQAEINTEELLNTLPAGTSV
                     SFIAKNLDTNQIITQYQSDIFMLPASTQKVFTALAAKLTLNDDFRFQTALLTNGKVEN
                     GVLKGNLIARFSGDPELTSGQIYQLMSKLKQQGINKIEGDLILDPSVFASHDKASGWI
                     WNDLTMCFNAPPAAINVDHNCFYVTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPK
                     EAPFCQLDVVVHDNNRYQIKGCMARQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAF
                     NGQVKEPLTAQNGTLLAEHYSEPLPVLLKKMMKKSDNQIADALFRTVANKQHNRPASF
                     QLGSYVIRQLLKTKANIDFKNSVVADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLF
                     ETFPIAGVDGTISGRGSISTEPLAKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFI
                     NGYSTGELESKTKRAPLNTFENKFYMALFNE"
     gene            12742..13218
                     /gene="greA"
                     /locus_tag="PXD88_000295"
     CDS             12742..13218
                     /gene="greA"
                     /locus_tag="PXD88_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL6279914.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
     gene            complement(13274..13690)
                     /gene="ndk"
                     /locus_tag="PXD88_000296"
     CDS             complement(13274..13690)
                     /gene="ndk"
                     /locus_tag="PXD88_000296"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL6279915.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(13700..15778)
                     /gene="metG"
                     /locus_tag="PXD88_000297"
     CDS             complement(13700..15778)
                     /gene="metG"
                     /locus_tag="PXD88_000297"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL6279916.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            15990..16961
                     /gene="menC"
                     /locus_tag="PXD88_000298"
     CDS             15990..16961
                     /gene="menC"
                     /locus_tag="PXD88_000298"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL6279917.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            17206..17907
                     /gene="rsuA"
                     /locus_tag="PXD88_000299"
     CDS             17206..17907
                     /gene="rsuA"
                     /locus_tag="PXD88_000299"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL6279918.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            17897..19078
                     /locus_tag="PXD88_000300"
     CDS             17897..19078
                     /locus_tag="PXD88_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL6279919.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(19218..20537)
                     /gene="rlmD"
                     /locus_tag="PXD88_000301"
     CDS             complement(19218..20537)
                     /gene="rlmD"
                     /locus_tag="PXD88_000301"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL6279920.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            20622..21947
                     /locus_tag="PXD88_000302"
     CDS             20622..21947
                     /locus_tag="PXD88_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL6279921.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            22068..22367
                     /locus_tag="PXD88_000303"
     CDS             22068..22367
                     /locus_tag="PXD88_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279922.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            22528..25440
                     /gene="rapA"
                     /locus_tag="PXD88_000304"
     CDS             22528..25440
                     /gene="rapA"
                     /locus_tag="PXD88_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL6279923.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            25567..25863
                     /locus_tag="PXD88_000305"
     CDS             25567..25863
                     /locus_tag="PXD88_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6279924.1"
                     /translation="MYIDLQYAVPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKV
                     VLEACIEPELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            25847..26089
                     /locus_tag="PXD88_000306"
     CDS             25847..26089
                     /locus_tag="PXD88_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL6279925.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            26101..26769
                     /gene="rluA"
                     /locus_tag="PXD88_000307"
     CDS             26101..26769
                     /gene="rluA"
                     /locus_tag="PXD88_000307"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL6279926.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(26747..27322)
                     /gene="ampD"
                     /locus_tag="PXD88_000308"
     CDS             complement(26747..27322)
                     /gene="ampD"
                     /locus_tag="PXD88_000308"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL6279927.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDMAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            27382..28224
                     /locus_tag="PXD88_000309"
     CDS             27382..28224
                     /locus_tag="PXD88_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL6279928.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            28347..28988
                     /gene="pyrE"
                     /locus_tag="PXD88_000310"
     CDS             28347..28988
                     /gene="pyrE"
                     /locus_tag="PXD88_000310"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL6279929.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            29162..30251
                     /locus_tag="PXD88_000311"
                     /pseudo
     CDS             29162..30251
                     /locus_tag="PXD88_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(30316..31506)
                     /gene="metC"
                     /locus_tag="PXD88_000312"
     CDS             complement(30316..31506)
                     /gene="metC"
                     /locus_tag="PXD88_000312"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL6279930.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(31565..32104)
                     /gene="dsbB"
                     /locus_tag="PXD88_000313"
     CDS             complement(31565..32104)
                     /gene="dsbB"
                     /locus_tag="PXD88_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL6279931.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(32167..33708)
                     /gene="nhaB"
                     /locus_tag="PXD88_000314"
     CDS             complement(32167..33708)
                     /gene="nhaB"
                     /locus_tag="PXD88_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL6279932.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WGVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
     gene            33865..34590
                     /gene="fadR"
                     /locus_tag="PXD88_000315"
     CDS             33865..34590
                     /gene="fadR"
                     /locus_tag="PXD88_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL6279933.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
     gene            34605..35675
                     /locus_tag="PXD88_000316"
     CDS             34605..35675
                     /locus_tag="PXD88_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL6279934.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(35801..37807)
                     /gene="tkt"
                     /locus_tag="PXD88_000317"
     CDS             complement(35801..37807)
                     /gene="tkt"
                     /locus_tag="PXD88_000317"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL6279935.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            38165..38377
                     /gene="rpmE"
                     /locus_tag="PXD88_000318"
     CDS             38165..38377
                     /gene="rpmE"
                     /locus_tag="PXD88_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL6279936.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            complement(38432..>39064)
                     /locus_tag="PXD88_000319"
     CDS             complement(38432..>39064)
                     /locus_tag="PXD88_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL6279937.1"
                     /translation="TVFPKQVHFADYLNYAIFADFLEKNQVNYNLNIPNELSSFANTL
                     WQEKKIRLLLNPQGSMREISTQELSELLSMIDKRYVQHISCLLTNTTNSAEYLSKIKA
                     PFEISLAPNSDILGYCALVNSADIVIAVDGGGVHISCALGKKLLSFYANHPANIARWY
                     PKPKKDVETFMVIADKWTEDNNDTRGFSLVAPAKWLNHQFAKLIEKYTAC"
BASE COUNT        11413 a         7563 c         8561 g        11527 t
ORIGIN      
        1 tacaaatata atccaaattc tgttgtttgg ctaaatgcca taatgcaata tgactcaaag
       61 cacaggctat ttcacctttt gttaagtttg tatttgaaat gtcaatatta aatgctttgg
      121 ctttttcttt aattaaatcc ggcgtaatcg catcgaaaaa ttgaaaagga atattttgtt
      181 tgccgaattc agcttcaata tgttttctac gctcctgtgc ggaggttagg ctaattacat
      241 aattattcat aaatttaatc tatcatatag caagcggtta tttttgatta aatttttgca
      301 aaattaacaa gaaatttcac cgcttgaaag gttaattaat cggtggtaat tcggtcatag
      361 cccagcgggg ttttacgcta atgcttaagt cggtttgttc atcgtttttt aagcgaagaa
      421 agccagtgta ggcaatcatt gcgccgttgt cagtgcaaaa ttgtgggcga gggtagaata
      481 cttcgccttt taattttttc atcatttccg caaggtctgc tcgtaattgt ttattggcac
      541 ttacgccgcc tgccattact aagcgtttat agccggtttg ctctaacgct cgcttgcatt
      601 taattaaaat agtatcaacc acggcttgtt ggaatgcgtg ggcaatatcg catttggttt
      661 gctcatcgag ttcaccattt tcattaagat tggctttaat cgtattcgca gcaaaggttt
      721 ttaaaccgga gaaactgaaa tccagtcccg gtctgtcggt cattggacga gggaatttaa
      781 aacgatttgg cgtgccggat tcggctaatt ttgacatcgc tacaccggca gggtaatcca
      841 aaccgagtag tttgcctgtt ttgtcaaagg cttcaccggc agcatcatca attgattccc
      901 cgagtagttc gtattgccca acgccgtcaa cttttaccag ttgggtgtgt ccacctgaaa
      961 tcaataatgc cacaaacgga aattcagggg cattttcttc caacattggg gcaagtaaat
     1021 gcccttccat atggtgaacg cccaatgccg gaacattcca agcataagcc agcgaacggg
     1081 caatggttga gccgaccaat aaagccccga ccaagcctgg gccggcagta taggcaatgc
     1141 cgtcaatatc cgagggttgc agattggcct cttttaaggc ttcttgaatt agtggcaacg
     1201 ttttacggat atggtctcga gaagccagtt cagggactac gccaccgtaa tcggcgtgca
     1261 tatcaatttg gctataaagc tggtttgcca ctaagccttt gtcttcatca taaatggcaa
     1321 caccggtttc atcacaagag gtttcaatac ctaaaattcg catagttgga gaagtcaaaa
     1381 taagttagaa aaccaaaagg ggcgaagaac gcccctcaca ttattctctg tacgactaga
     1441 attgttcgcc atacttcagt ttttcaggat tcggtagctc tttgctttca tattcttgga
     1501 tcaagagttc cgttttttgc tctgcatctg ggatattcat ttgcttatat gcttctttta
     1561 agtatggcaa tgcttgtttg gttgccagtg tattcgggta aaaacgcaac atttcttcga
     1621 tacggtttac tacagccaca taggcattac gttcatcata aaatttaaca acggctaatt
     1681 cgtgttccgc taaacggtta aataagtaat tcatccaatt ttgagcatct tgtgcatatt
     1741 ggctttgagg gtagcgctgt acaatagttt ggaagttacc gtaagcatta cgaacattat
     1801 ctacggctcg agaggcgcga tttacaccaa agaagtcttg aataaaatta tcacttagac
     1861 gtgcatttga taatcctgct agatagaata cgtaatccat attagctgca ttcgggtaag
     1921 agcgagcaaa acgttctgcg gcatcaagtg ctttatagta ttcgccaact ttatattgag
     1981 cataaattaa acttagttgg gtttgctcac caagtcctga atattggcct cctttggttc
     2041 caaccgcttc taagtagcga atggcagaat tataatctcc atcttgtaaa taggtctgac
     2101 ctttgccata aagatcttga acgttggatt gttctaattc tttatttgaa tttgaacaac
     2161 ctgcaacaaa cagtccggct aatactaatg tggcaagaga tttaaattta cgcatatgtt
     2221 ttacctataa aaagtgtcta ggacgaaaag ttaatgtaca atgtcctctg actaagaata
     2281 acttatgaag ttcatctcgc tattctatat aacatcacgc aagtaagcaa atgactaatt
     2341 aggatttatg gtttaatgac tcaacaaaag attttaacag cagaaattac tgcagattta
     2401 ctaggtgctc gcctagatca ggctctggca caactttttc cggactattc tcgttcacgc
     2461 attaaagtgt ggattgaaag tgatctagtg aaagttaatg gcaatatcgt gaataaagca
     2521 agggaaaaag tatttggtgg tgaaactgtt gaaattaccg ctgaaataga agaggaaatt
     2581 cgttttgagc ctcaagatat tcctctaaat attgtgtatg aagatgacga tattatcgtc
     2641 attaataaac cgaaggattt agtggttcac ccaggggctg gtaatccgga cggtacagtg
     2701 ctgaatgctt tgctacatta ttatccaccg attgcagaag tgcctcgagc agggattgtt
     2761 caccgattgg ataaagacac gacaggctta atggtagtgg ctaaaaacat tccggcacag
     2821 actcacttag taaccgcatt acaaaaacgt cgtattaccc gtgaatatga agcgattgcc
     2881 agcggcatta tgacacaggg cggaaaagtt gatgagccaa tggctcgcca cccaactaaa
     2941 cgtacggcaa tggctgttca cccaatggga aaaccggcgg ttacgcatta tcgtattatg
     3001 gagcgttttc gtaattacac acgtttacgt ttaagattag aaacagggcg tactcaccaa
     3061 attcgggtac atatggcgca tattgctcac ccattattag gtgatcagct ctatggcggt
     3121 agacctcgcc cacctaaagg tgcgagtgac tcgtttttat cggtgttacg aggcttccaa
     3181 cgccaagcct tacacgccac aatgttgaga ttagagcatc cgattactgg tgaaatgatg
     3241 gagtggcacg ccccgttacc tgatgatttt attgaattga ttcaggcact aaaagcggat
     3301 tatgagcttt ataaagatca attagattat taagtttagg tgttgcttaa ataatgtaaa
     3361 gttgctatat tgaaatcgtt ttcataagta aacaacaaaa aaggagcttt ctatgaaaaa
     3421 attagtatta actattttag cagctgcaac tttcttgact gcgtgtaata ccgttgatgg
     3481 tgttggtgag gatgttgaaa aagcgggcga taaaattcag caggctgcac aataacaaaa
     3541 agcttcgaat tctaagaagc taataatata tataccttat tgaacaattg ttcaataagg
     3601 tatatttttg cgaaaaatac ggtaaatttt accgcttact cttggaataa aaaatagggc
     3661 taaatgatat ctctcattta gcccttatta ttagatgtaa agtttaaaca tcaatgttca
     3721 tttttctctt ttagtttaat taactgacct tctaatttct tcttaacatc aaaaattgca
     3781 gtatataaat cttcatgttc agctttagcg actaaatcac ctaaaggggt gccaattgtt
     3841 gcttcaactt ggaatgagtt aggttgtttt atcagcataa aatgtgggtt tatcaattgg
     3901 gtgtggtatt tttctaactt agctaaacgc tcctcaatat gagtacggat tgcaggggta
     3961 atgtccattt gtttgcttga aatatttaat gacataacat tttcctcttg tttagttaag
     4021 gcttttgccg ttgatattct aataaccaaa atatgctcat cactccaaaa attcaagtga
     4081 aaaatgaaat aagtttccaa aaatttgatc tacttaacac ttttagcagt ttttagctat
     4141 aatgtaatca taatctagta tgtgagaata attaatgagt gagaaaaaac agttacctcc
     4201 attccagaca caatttttac accctaaata ttggggattg tggctcggtt taggtgtttt
     4261 taagttaatt ttatgtttgc cttatcctat tttagtaaaa attggtctgg gactaggtaa
     4321 attgtttact aaattgggtt ttggtaaacg tcgtatgcgt attgctcgcc gtaatttaga
     4381 gctctgtttt ccccattact ctgctgagaa agtagaggaa ttagtcgaag aaaatatgaa
     4441 atcggttgga atggcgatta ttgaaactgg tatggcttgg ttttggtcgg ataaacgtat
     4501 tcttaaatgg tctaaaatcg aagggctaga gcatttaaca cagcgtgatc aggaaagggg
     4561 tattttactt gtaggggtgc attttctgac tttagaactc ggtgcaagaa ttattgggct
     4621 acatcatcaa ggagtagggg tttatcgacc gaatgataat ccattattag attggataca
     4681 gtttcgagga cgtgttcgct caaataaagc gatgttagat cgtaaagatg tgcgtggaat
     4741 gattcgagct ttaaaaaatg gcgagatgat atggtacgcg cctgatcacg attatggaag
     4801 acgaaatagc gtttttgtac cattttttgc agtggaggaa acttgtacta ctgcgggtag
     4861 ttatatgtta cttcgttctg ccccaaagag tttagtgatc ccgtttagcc cgattcgaaa
     4921 tttggactat tcaggctaca cagtaaaagt cagtcctgcc gttgatttta gtcaatgtca
     4981 aaatgaagtt gaaacggcta ttttaatgaa tcgggtggta gaacgtgaaa ttatggctgc
     5041 gctaactcaa tatatgtggc tacatcgccg ttttaaaact cgcccaaatg aaggtgatca
     5101 aagcctatat gattaatttt aaataatttc aaaaaagtgc ttgcatattt aagctgaatt
     5161 ttgcaatcta gcaatgttat caagcataat aaaaaaatac aggagatgat tatggcgacc
     5221 cctttatttc acggtagtat cgtagcatta gttacaccaa tgactcatgg tgaggtagat
     5281 tatcaggatt taaaaaaatt agttgagtat catattcaag caggttctca cgctattgta
     5341 tctgttggta caacaggtga atctaccaca ttaagcattg atgaaaatgt taaggtgatt
     5401 aagaaaacgg ttgaatttgc tgatggacgt attccaatta ttgcaggaac tggttctaat
     5461 gcgaccagtg aagctatcac tatgactaaa ttattagcaa acagtggtgt agctggttgt
     5521 ttaagtgtag tgccttatta caacaagcca acgcaagagg ggatgtactt acactacaaa
     5581 gcgattgcag aaagtacaga tttaccacaa attctgtata atgtgccggg gcgaacaggg
     5641 agtgatttaa aacctgaaac aatcggtcgc ttagcgaaaa ttgagaatat tgttgctgtg
     5701 aaagaagcaa cgggtgattt aagccgctta cctttaatta agcaattagc cggtgaagat
     5761 tttattttct taagtggtga tgatgctacc ggttttgagt ctatgaaatt aggtggtcaa
     5821 ggggtgatct cggtcaccaa taatgttgct gctgctgata tggcaaaaat gtgtgagtta
     5881 gctcttgccg gtcaatttac tgaagcagaa gaaattaata accgcttaat ggcgttacac
     5941 catgacttat ttgtcgaatc taacccgatt ccggtgaaat gggctgctta taaattaggt
     6001 ttaattagtg agcctaattt acgtttaccg cttaccacac tgtctgaatc agcacagcct
     6061 gtagtgttaa aagcattaca acaagcgggc ttaatttagt tattttttgc aaatcaaatt
     6121 tgaaaccggt taagttaatt ctaaccggtt ttttcatatc taaaagaaat ttccacataa
     6181 aaataaaatt ctaaatttct ttgatttaag taaaatttaa ttttgtttga tggattttta
     6241 ctcgccaaaa acactatttt ttctgctttt aatagtttga tcaaaaaata cgtaaaatct
     6301 tgttgtgtta ctgtttccca tcgctaatat agcatagctt gttagataat tctttaaagg
     6361 agattactat ggctatgcca tctcaacgtt tttctcttac ttgggtacta aatttatttg
     6421 gtactgcggt aggagccggc gttttatttt tgccaattaa tgcaggtatg ggtgggttct
     6481 acccacttat tattatgact ttgttagttg gaccaatgac atatttagct caccgtggct
     6541 taacacgttt tgtgctttct tcaaaataca aagggagcga tattacggct gttgttcgtg
     6601 aacattttgg tgaacaggcc ggtaaattga tcacgctact gtacttcttt gccatttttc
     6661 cgattttact gatttatggt gtaggtatta ccaataccgt gagttctttt atggagaatc
     6721 agcttcatat cgcgccacca tctagggctg tattatcgtt tatgctaata gctgctatga
     6781 tcggagtaat gttattaagt gagcaagtca tgttaaaaat cacaacttgt cttgtgtatc
     6841 cattagtgtt gattttattg ggcttatcta tttatttaat tccacagtgg aatacagctg
     6901 ccttacagca aatgccaact acaggagact tccttactac actttggctg actattcctg
     6961 ttttagtctt tgcttttaac cattcaccgg ctatttcttc ttttgcactt tctcaacaga
     7021 aatattacca agatgacaag aaggctgaaa ttgaatcagc taaagtatta cgttctaccg
     7081 cctttatctt ggtgttattt gtgatgttct ttgtatttag ctgtgtatta actttgacac
     7141 ctgaagaatt agcacaagct aaagtgcaaa atatttcgat tctttcttac cttgcgaata
     7201 aatttgataa tccgattatt tcctattttg gaccgttggt tgcttttttg gcgattggta
     7261 gctctttctt tgggcattat ttaggtgcgc gcgaggggtt agaaggattg gttaatcaaa
     7321 tgcgtaaaga gccgattgat ccaagcaaat tccgcaaaat taccgctatt acttttttga
     7381 tcattttatg gattgttgcg actatcaatc caagcatttt aggcttcatt gaaagccttg
     7441 gtgggccgat tattgcgatg atcttgttta ttatgcctgt ctatgccgta tataaagtac
     7501 cggcacttgc acgttttaaa ggtgaatttg gccatttatt tgtgcttgtt atgggttgta
     7561 ttgctatttc agcaatagta tatgggttac tgtaatcttt ctaaaatcaa tgtagaatac
     7621 gcccttttat tttctatgtg aatttgtgtt tatgattagt gtatttgata tgtttaaagt
     7681 agggattggg ccttccagtt cccatactgc ggggccgatg aaagcggcaa aggaatttgt
     7741 cgatgaatta caaaatcgca aatttttaaa caaaattgac cgcttgcggg tagatgtcta
     7801 tggttcatta tcactcaccg ggcgaggaca taatacggat attgccatca taatgggatt
     7861 aatggggtat ttgcctcata atgtggatat tgaacgtatt gagcagacga ttgaaaatct
     7921 aaaacaaaat aagcaactta tcattgctga aagcagtgtt gagcctaaag tgattgcgtt
     7981 cgatttttat gaggatatgc catttcatcg agatttctta cctcggcacg aaaatggtgt
     8041 gaaatttagt gccttgagcg gtgaagagtt gctatttcaa aacacctatt attctattgg
     8101 tggtggcttt attgttgatg aagctaactt tgagcaagtt aaaaattcag atctttctgt
     8161 tccattccca tatcagaatg cagcagattt acttgcacat tgtaagaata acgggttacc
     8221 gctttcttct ttagtctgga aaaatgagct tgctttacgc agtagagtag aaatttcgga
     8281 ttatttggca atgatttgga atacaatgga agcctgtatt gagcgtggtt tgaatacgga
     8341 agggttacta cccgggcctc tgaaagtggt acgccgtgcc agtgggctac gcagaatgtt
     8401 agaggcaaac agtaaattca ataccgaccc aatgcaaatt atcgattggg tgaatatgtt
     8461 tgcccttgcc gtgaatgaag aaaatgcggc aggtgggcga gtagtcaccg cacctaccaa
     8521 tggagcctgt ggtattgttc cggctgtgtt ggcgtactac caaaaattta ttgcacagct
     8581 taatcaagat actattgagc gttatttatt gactaccagt gtgattggtt cgttatacaa
     8641 aatgaatgcc tctatttccg gtgctgaagt aggttgccaa ggggaagttg gtgttgcttg
     8701 ttcaatggcg gcagcaggtt taacggaaat tatgggtggc agtgctgaac aggtgtgtat
     8761 ggctgcagaa attgcaatgg agcacaattt aggcctaact tgtgaccctg ttggcggaca
     8821 agtgcaagtg ccttgtattg aaagaaatgc aatcgcttca gtcaaagcga ttaatgccag
     8881 cagaatggca ctacgccgta cttcttcgcc tcaggtaagt ttagataaag tcattgaaac
     8941 aatgtacgaa accggcaaag atatgaatgc aaaataccgt gaaacctcaa ccggtggctt
     9001 agcaatcaaa attttacctt gtgattaatt aatgaaaaag gctaccttat caaaataagg
     9061 tagcctttta gtttgtagaa cattaatgac ggaaatgcct cattccggtt agtaccactg
     9121 ccataccgtg ttcgttggcg gcatcaatca cttcttgatc acgcattgaa ccacctgggt
     9181 gaatcacaca agtaatccct acttttgcag cagcgtcaat accatcacgg aacgggaaga
     9241 acgcatcgga agccattaca caacccacaa cttgtaagcc ctcgtcttcc gctttaatac
     9301 ctgcaatttt tgcggaataa acacggctca tctgccctgc accgataccg atagtttgcc
     9361 cgtctttggc atacacaatc gcattcgatt tcacatattt cgccactttc cagcagaaca
     9421 ataggtcttt tagctcagct tcagttggtt tacgctctga aaccaccttt aaatcgtcaa
     9481 tagatacaga gccttggtcg gcatcttgca ctaataatcc gccgtttacc cgtttgaaat
     9541 ctaagcgttt tacagcttct gagaactcgc cacattcaag cacacgcacg tttttcttag
     9601 tggctaacac ttctttggca gaagcagaaa cggttggtgc aataatcact tcaacaaatt
     9661 gacggtctgc gatggtttga gcagtttcgc cgtctaattc acggttaaag gcaataatgc
     9721 caccgaaagc agaagttgga tcggtttggt aagcacggtt gtaggcatct aaaatatttt
     9781 tacccaaagc aacaccacaa gggttagcgt gttttacaat cacacaagca ggctcgctaa
     9841 attctttcac gcattcaaga gccgcatcgg tatctgcaat attattatac gaaagggctt
     9901 taccttgtaa ctgtttggcg gtggaaacag aggcttcttt taactcattt tcgacataga
     9961 atgcagcgtt ttgatgcgaa ttttcgccat aacgcatcgt ttgtttacgc acaaaattga
    10021 ggtttaaggt gcgagggaat tgtccacttg gttgggttaa atcttcttcc tcagcccctt
    10081 gataaggcgg cactttttgc ccgaaatagt tggcaatcat tgaatcgtat tgtgcggtat
    10141 gctcaaacgc tttaatagca agattaaaac gggtttctaa agttaaactg ttttgatgtt
    10201 gatccatttc ggcaagaata gcatcaaaat cattgttatt gaccacaatc gccacatctt
    10261 tatgattttt cgctgcagaa cgcaccattg tcggaccacc gatatcaata ttttccaccg
    10321 catcttcaag gctacaattt ggattggcaa cggtttgagc aaaagggtag aggtttacta
    10381 ccaccatatc aattcgttca atgccgtgtt ggttcatcac ttcatcatca gtaccacggc
    10441 gacctagaat tccgccgtgc actttcgggt gcagggtttt tacacgcccg tccatcattt
    10501 caggaaagcc ggtgtaatct gatacttctg ttactagcaa accggcttca gccagtaatt
    10561 ttgcggttcc gcccgtagaa agtaatttta ccccacgagc cgatagccca cgagcaaatt
    10621 cgacaatgcc ttttttatca gacacactta ataacgcctg ttgaatcgcc attcttaaat
    10681 tccttaaaat gagtgttaac gtgaaaataa acggcaaaga ttataacgca aacgtttgct
    10741 tttttcatct acaagtggtc gattttgcaa atttttctgc aaaatcgacc gcttgcactc
    10801 gtgattaaag cgggtagaat agaggaaaaa aatcggagga actatgatta accacaattt
    10861 agcagatttc gtatttgagt attttaccga aaacaaccta aaagcaggca cactacgtta
    10921 tcgctacata aaagagaacg tgattgatgc ttacagtacc cgagtagatg atgcctttca
    10981 aggtaaaggt attgcaggag agctttacaa tgctttaatt gcgtttgcgc aagaaaaagg
    11041 gctgaaaatc aagccaagtt gtagttatat tgaggtaaaa atgcaacgaa gtcatcgaga
    11101 tttaattgct tagagaggag caagcggtcg taaaatttca aaaatttacg accgctgtct
    11161 tattcaattc tcaaaaatcc atcacacaaa atataagccc tattcattaa acaacgccat
    11221 ataaaactta ttttcaaatg tattaagcgg agcccgtttg gttttgcttt cgagctcgcc
    11281 ggtggaatag ccgttaataa attgcacaaa agcgatgcgt tcgccacggg cgtttttcat
    11341 aaagccggca aggttgtaaa cccctttcag tgagccggtt ttggcaatca gatttttggc
    11401 aagcggttct gttgaaatag agcctctgcc ggaaatagta ccgtccacgc ctgcaatcgg
    11461 gaaggtttca aacagtttta agctttcttc gttttgagcg atatattcaa gggtctccag
    11521 cattgttcgg ctgctgactt gattatgacg ggaaagccct gagccatcag ccaccacgct
    11581 gtttttaaaa tcaatattgg ctttggtttt taataactgg cgaatcacat aactacctaa
    11641 ttggaacgat gcggggcggt tgtgttgctt gttggcaacg gttctaaaca gggcatcggc
    11701 aatttggtta tccgattttt tcatcatttt tttcaataat accggcaacg gctcggaata
    11761 atgctcggca agtagcgtgc cgttttgggc agtaagtggc tcttttactt gcccgttaaa
    11821 ggcaattttc aggcttttta actgggcttt aagcatattt gccccgtaat tagttgggtc
    11881 ttgcaccgaa aaacttaagc cgaacggttg agactggcga gccatacagc ctttgatttg
    11941 gtagcggttg ttatcgtgaa ccaccacatc aagctggcaa aacggagctt ctttcggctc
    12001 gacaatataa gcagagctaa acacctgcac cggataagcg gacggcacat tcactttagc
    12061 aaattcgcca atgggttggt cggcatttaa ggtgacataa aaacagttgt gatccacatt
    12121 aattgccgcc ggtggggcgt taaagcacat cgtcaagtcg ttccaaatcc aaccggaggc
    12181 tttgtcgtgg ctggcgaaaa ccgacgggtc tagaattaaa tccccctcaa ttttattgat
    12241 accttgttgc tttaatttgc tcattaattg ataaatttga ccgcttgtaa gctcagggtc
    12301 gccactaaaa cgggcaatta aattgccttt taacactccg ttttctactt ttccgttggt
    12361 taaaagggca gtttgaaagc ggaaatcatc gtttaaagtt aattttgctg ccagtgccgt
    12421 aaagactttt tgggtactgg caggtagcat aaaaatatca ctttggtatt gggtgatgat
    12481 ttggttagtg tctaaatttt tagcaataaa actaacagaa gtaccggcag gcaaggtatt
    12541 taataattct tcggtattaa tttcagcctg tgtaatgctt ggaatcagaa gtgtagataa
    12601 gataaattta tttaaaaaag cacgagtgaa atttttaaaa atcataataa aaggggagtt
    12661 gaaattttta gtgagaaatt gaataatagc cctttcgttt taattcgtaa accgataatt
    12721 tttagtaagg aaatagattt aatgaaacaa attcctatga cggtgcgtgg tgcagagcaa
    12781 ctgcgtgaag aattggattt tttaaaaaat gtgcgtcgcc cacaaattat tgatgcgatt
    12841 gcagaagccc gtgaacacgg tgatttaaaa gagaacgcgg agtatcacgc agcccgtgaa
    12901 caacaaggtt tctgtgaggg gcgtattcaa gaaattgaag gcaaattagg caatgctcaa
    12961 attattgacg tcactaaaat ggcaaacaac ggcaaagtga tttttggggc aacggtgcag
    13021 ttagtgaatg ctgatacaga tgaagaagtc acttaccgca ttgtgggtga tgatgaagcc
    13081 aatattaaag agggcttaat ttcagttaat tccccgattg ctcgtggttt aatcggcaaa
    13141 gaggtggacg attcagtcag cattaccaca ccgggtggca aagttgagtt tgacattgtt
    13201 ggcgtagaat atatttaatc tacgctaggg cgaattacaa tagtggggcg aaaaaatttt
    13261 cgcccctact ttattaaaca atctcactcg gtacaaagaa gtaggcaatt tcacgttttg
    13321 ccgactcttc ggaatctgaa ccgtgtaccg aattttcacg catacttaag gcatataaat
    13381 cgcgaatggt gcctttttca cggttatccg gattggttgc ccccattaat gcacgataat
    13441 ggctaattgc attttcccct tccagtacag aaacgacaat agatcctgat gtcataaatt
    13501 ccactaacgg ctcaaagaaa tctttgcctt tgtgttccgc ataaaatcct tccgcttgct
    13561 cacgggtaag atgtactttt tttagagctt tgatagtcag cccgttttct tccaattgag
    13621 ccaaaatttt gccgattaaa ttacggcgtg tagcatccgg cttaataata gaaagcgttt
    13681 gttgaatcat catcttctcc tatttaactt gcattcccgg ctgaacaccg ctgtctgcat
    13741 ctaataagaa caggttcgca ccgcctgtgc cggcagataa aatcattccc tccgacatac
    13801 cgaacgacat tttgcgtgga gcaaggttgg caattacaat cacaaaacgc ccgataagtg
    13861 cttccggatt tgggtaggcc gccttaatgc ctgagaatac ttggcgttgg tggtcgccta
    13921 aatccagctc aaaacgtaac attttgtctg attttggcac agcctcgcag ttcaatactt
    13981 tggctgcacg taaatctaat ttcgcgaaat catcaatcgt aatttcaggg ctgattggct
    14041 caactgcaat attttcttgt ttttcgaccg cttgttgttc cactttttgt gttcctttgg
    14101 tttggttttc ggttttctta ttcgcttcgg caaataaggc tttggtttca tcaatcactg
    14161 catcaatctg ttttttctca aggcgtgaga atagcgattt aaacggtgcc acggtatgcc
    14221 cgaataatgg ggtagcgata ttatcccaac gcaattcgct ttgtaagaat gcttcggcac
    14281 gttctgccag ttttggtaac accggtttta ggtagctcat cagcacacgg aataactcaa
    14341 tgcccattga acaaaccgct tgtaattcag cctctttgcc ttcttctttg gcgatgaccc
    14401 aaggggcttt gtcgtcaatg tatttattgg ctttatcggt taattccata atggcacgaa
    14461 tagctttatt aaattcacgg ttttcataga aattcgctat ggtttctgct tgagcggtaa
    14521 attcattaaa taacgcttcg tcatctaatt tttcagctaa tttgccctca aagcgtttag
    14581 cgataaaact ggcgttgcga gaagcaagat tcactaattt gtttacgata tcgctgttta
    14641 cacgttgcac gaagtcgtct aaattaaaat ctaaatcttc aatgcgatcg tttaattttg
    14701 ccgcatagta atagcgtaag cattccggat cgagatgttt taaataggtg ttggcttgaa
    14761 tgaatgtacc acgagatttc gacattttcg ccccgtccac tgtcacataa ccgtgagcaa
    14821 acacattggt cggtttgcgg tagccgctgc cttccaacat tgccggccaa aacaggctgt
    14881 ggaagtaaac aatgtcttta ccgatgaagt gataaagctc ggtggtggaa tctttttgcc
    14941 aaaactcatc aaaatcaatg cctgcacggt cgcataaatt tttaaacgat gctatataac
    15001 caataggggc atctaaccaa acgtagaaga atttgttttc tgcgtccgga atttcaaaac
    15061 cgaaataagg ggcatcacgg ctgatgtccc attgctgtaa accactttca aaccattctt
    15121 gcattttatt ggcaatttca ggttggagtg agccggaacg agtccactct ttcaacattc
    15181 cctcaaagct tggcaggtca aaaaagaaat gttctgattc ttttaccacc ggagttgcac
    15241 cggaaactgc cgagcgaggg ttgattaaat ccatcgggct ataggtagag gcacatactt
    15301 cacagttatc gccatattga tcttcggctt tacatttcgg gcaggtccct ttcacaaagc
    15361 gatccggcaa gaacatattt ttttctgggt cgaacagttg tgaaatcact ttgcttttaa
    15421 taaaaccgtt cgcttttaag gttttataaa tatcggtagt gatttggcgg ttctcttcgc
    15481 tgtgggtgga atggtaatta tcaaagctga tattaaaact ggcaaaatcc gcttcgtgat
    15541 cggctttggc tttttcgatt aactgctcag gggtaatgcc taatttatcg gcattaagca
    15601 taataggcgt gccgtgggca tcatcagcac agacaaagtg gacttcattg ccacgcatac
    15661 gttgaaaacg cacccaaata tctgcttgaa tatgttcaag catatgacct aaatgaattg
    15721 caccgttagc atagggcaag gcacaagtaa caagcatttt tcgtttttgg ttagccattc
    15781 tttttctcat taaaattagg gtaaaaattg ccgtctattt tagcccaaaa gtggcaggtt
    15841 taccagttgg cgtgaattta ttagagcttt gggctaacaa gcggtagaat atgatgcgct
    15901 agaggcgaaa catttttcgc ctcaatttcc caaatgatga tgtgggcgaa agatgtttcg
    15961 cctctaaacc tattttggat aaaaatagta tgcgacaagt aaagttatac cgctaccaac
    16021 tccccattca aaccggtgta gtgttacgca agcaaccttt gaaagaaagg caaggggtgt
    16081 tggtgtgttt gcaagaacag gagaaagtcg gctggggcga aattgcaccg cttccaagtt
    16141 ttagccaaga gagcctagaa caagctgaaa accaagctgt gaattggtta aaggcgtggc
    16201 agaaaggaga gcctgaaacg ttagagcagc ttttcccgtc tgttgccttt gggctaagct
    16261 gtgcgttggc tgaactgaat aatgaattag gcgagcaagc gaataaccaa tcggcggtgc
    16321 tgtgctatgg cgatttggaa aagttacaca cggcatttag ccaacatacg aacccaatcg
    16381 gtaaaattaa aatcggtctc aatcctgaac aggaaggcga gcaggcaaat ttgctgttgc
    16441 atacttttcc gaatttacgc ctaaggcttg atgccaaccg tctttggagc ttggaacaag
    16501 cggtcaaatt tgctgaaaaa attgcaaatg aacataaacc ccgtattcaa tttatcgaag
    16561 aaccttgcca agcgctcgaa ctttcccgcc aatttgccac acaaaccgac attgcgattg
    16621 cgtgggacga aaccgtgaga gaggcgaatt ttttggtaaa aaaagagcca aatttgaccg
    16681 ctattatcat taaacctacg ctggttggtt cgcttgaaaa atgcgtgaat ttaattcaac
    16741 aagcacagaa gcaaggatta gtagcggtga ttagttcaag tcttgagagc agtttgggct
    16801 taacccaact ggctcgtatc gcccaacaat acaccccaaa cagtgtgccg gggttggata
    16861 cgttaaattt aatgcaacac caattattgc gagattggca cgactctagc ttgccgttgg
    16921 tcgggctaga aagcgaattt gttagggaag ttgtggtata atctcccaat taaacactct
    16981 ctccccttgt gggagagaga ccgcttatga gcgttcagcg aaataagcag agagagggga
    17041 agcggtcatt tttctaaaaa agtttgcaca tttcccctct ccctgatttt tcttctggac
    17101 gaagacgtat ttcccccctc tccctgattt ttcttctaga cgaagaaaaa tctgtccctc
    17161 tcccacgagg ggagagggta aagtaattta tggtataaaa atagtatgcg tttagacaaa
    17221 tttatcgccg aaaataccgg tttgacccgt tcacaagcgg ctaaagtgct gaaaagtggt
    17281 gtggtgacgg taaacggcaa tattgaaaaa agtggtgcgg caaaaatcag tcaagaagat
    17341 gaaatttatt acgaagatca gaaattagag tgggtggaag aggggcagta ttttatgctc
    17401 tataagccac agggctatat ttgttcacac gatgatggtg agtacccaac ggtgtttcaa
    17461 ttctttgatt atccgttaat gactaaattg cataccgcag ggcggttaga tgtggatacc
    17521 acagggctgg tgctgttaac cgatgacggc aaatggtcgc accgtattac ctcgcccaag
    17581 caccattgtg aaaagacata cttagtgacg cttgctgatc cggtggaaga tttttatgca
    17641 cagcgattgg cagaaggaat tttattgcgt ggcgagaaag agccaacctt gccggctcaa
    17701 cttgaaattt tagacgatta caatgtgaat ttaactatta gtgaggggcg ttatcatcaa
    17761 gttaagcgaa tgtttgccgc ccttgggaat aaagtcgagg cattgcaccg ctggcgaatt
    17821 ggcgatgtgg tgttagatga aaggttggaa gaaggtgaat tccgctcgct cacttcagag
    17881 gagatagcca gttttaatgg aaagtagaag accaagcctg agctttttca tcatattagg
    17941 tatgatggca atgttgccac cattagccat tgatatgtat ttgccctcat ttttagacat
    18001 tgcccgtgac ttggcggttt cgcaagaaaa agtgcaaacc accttggcgg tatttaccct
    18061 aggttttggg gcagggcaac tattctgggg accgatggca gacagctttg ggcggaaaat
    18121 cattatttta atcggattag tcggctcggc gattgccgct tattttctga cccaagttca
    18181 gaatattgaa acattttacc tgctaaggtt agtacagggc ttatgtgcgg cagccccggc
    18241 ggtggtgctg ggagcattag tgagagatct gtttgagcgt aatttatttg ccaaattgat
    18301 gtcggttatt atgattattt ctatgcttgc cccattgctt gcaccgattg ttggcggtta
    18361 tattgccaaa tatttccact ggcactcaat tttctatgtg ttagtggcga tggggatttt
    18421 gtgcgtggta ttaattagtt ggaaaatccc tgaaacatta gcccccgaaa aacgcctgcc
    18481 gttaagtttt ggcaaaactt taagcaattt tgccatctta ctgaaacata ggcctactct
    18541 tggttatgtg ctgattggcg gcttaacctt tgcaggtatt ttctgttttt taacctcagg
    18601 ctcgattgtc tatattgggc tttatggcgt gtcgcaagaa aatttcggct atttcttcgg
    18661 gctgaatatg attgtgatgg tgacgatgac ggcgattaac agcaaaatgg tagtgaaagt
    18721 cggctctgaa acgatgttac gaattgcttt agctatgcaa ctgttagccg gcatttggct
    18781 ggctttagtg gcgatttttg atttaggctt ctgggcaatg gcaatcggta ttccgcttta
    18841 tatcggaatg ctttccacca ttggtagtaa tgccagtgcc gccattttag agcaatttcc
    18901 acaaatggca ggcacggcta acggagtagc aggtacggct cgttttggtg ttgcttccct
    18961 tgttggagca gggctttcac atattgctgt aaccagtgct gccccaatgc ttttggcgat
    19021 ggcattgtgc gttatgttag ccggtgtggt gtattatttt ctgtgttata agcgataact
    19081 aggttggggt tagcttgcga aaacccaaca aatttctaca agcggttaat aatagtacat
    19141 tttttgcaaa tttttaggca gaattaaccg cttgtgtggt acgagcgtgg acgctcgcac
    19201 catcggggca atatctacta agattttaaa aacagcgaaa tagattccaa atgcccggtg
    19261 tgggggaaca tatcaatcat tgccgctttt tctagcctgt agcctagttg caacagtttt
    19321 tcggcatctc gcaccagtgt tgccggattg caagagacat aaacaatccg ctcaggattg
    19381 agtgatgtca agtgatctag gcaaaatagt gctccgttgc gtgccgggtc gagtagtacc
    19441 ttgttaaacg gctcttttgc ccaaggtttg tcagaaaacg gctcatctaa attggtttgg
    19501 taaaattcca cattttttag accgcttgtc accgcattct ctcgggcttg ttgcaccatt
    19561 ggttctaccc cttccacacc gaccaccgat ttcgctcgct cagcaatagg caaggtaaaa
    19621 ttccccattc cacagaagag atctaacact cgatcttggt tggataattc cagccactca
    19681 agggcttttt ccaccatttt ttcattgagc gtggcattca cctgaataaa atcccgaatt
    19741 gaaaaatgca actttagacc ctgaatttga taatacgggc gttcaccgca cagatgctca
    19801 atgtgatttt cgctagtcat cacaaaaaga gataattgct cttgtgtggc gaattgacgc
    19861 aaattgtggt tatcttgcgc cgataatgcc cctaaatggc ggaaaaatag ggcaatggta
    19921 ttgtccgcac tgaccagctc aatatgcccc aattttttcg gctgttgcca gttttcaatc
    19981 aggtgtttta attttgggag caaattggca agcggttcaa ccagcacttc acagtgtgca
    20041 agcggtataa tttggttgga attttgcaaa cgaaagccga ttaccgcctt gccttgctgg
    20101 atcgcaatgc ttaattttgc ccgacggcgg tagtgtttat cgttgccgat aatcatcggc
    20161 tgaacatcaa tagcgtgggt ttgcaatttc tgtaagcgtt ggaataaagc ctgttgtttt
    20221 gccttacgtt gcagttcaag cgaaatatgc tgcatttggc agccaccgca ttgcccgtaa
    20281 agttcgcagc ttggcattcg ccgatttgca gattttttaa gaattttaac cgcttgtcca
    20341 cgtccgtatt ggcgtttctc ttccaacact ttaaattcca cctgctcatc aggcagggca
    20401 ttttcgataa accaagtttt gccgttgatt ttggcaatcc ctaagccttg ataatctaac
    20461 gattgaatag ttgccttttg acaagcgggt gattttatcg gtttttttgc cgatttttca
    20521 gaataaaaaa tagccattgt tttcagatga attgttatga tataaagtgt cgaaatgggg
    20581 agattatata agaaaagcag ttggcggaaa atggaggcaa tatgatttca tcggtttgga
    20641 atgaacgtta tttggcggat aaaaaacggg aacaagatca ccgctcgcct tttcagcggg
    20701 atcgggcaag gttattgcat tcggaggctt ttcgctgttt gcaggcgaaa acgcaaattc
    20761 acgccgtggg ggaagatgat ttttatcgaa cccgtttaac ccattcgttg gaagtggctc
    20821 aaatcggtag cagtttgcga gaaaaattat tagcggatgt ggaaggcttt caagcggtct
    20881 gttcggagca ggaatttgca aaaaatatgg caaatctgac cgctttattg ccggatcata
    20941 gcttggtgga atccctttgt tttgcccacg atctcgggca ccctccgttc gggcacggtg
    21001 gtgaaatggc gttaaattat aaaatgtacg cctttggcgg cttcgagggt aatgctcaat
    21061 cctttcggat tatgacccag cttgagcctt acaccgaaac agccggaatg aatctgaccc
    21121 gtcgcacctt actgggggta atgaaatatc cggcactctt gtctcaaacc tcgccgattg
    21181 agccggcaga aatgagcgag gctcggcata ttaatttgca ccattttcca cagagcaaag
    21241 ggatttttga tgacaacaac cacttttttg agtgggtatt agccccgtta agtgaaaaag
    21301 accgacgcca attttgcacg gttcagccca atcaagatcc gaaacagcca aacaaaacgc
    21361 aatataaatc tctcgattgc agcataatgg aactagcgga cgatattgcc tatggcgtac
    21421 acgatttgga agatgcgatt gtaggtggaa tggtcacacc gcaatcgtgg caaaatgcgg
    21481 aaaaattgct ggcggagtgc caatccgatt gggtgaaaca acgcctgccg gagattcggg
    21541 aaaagctctt ttctcagcac cgctacgagc gaaaagatgt gatcggggca ttagtgaatc
    21601 attttattac caatgtgcgt tggaaagctc tgcctgaatt tgacgagccg ttgctacgtt
    21661 ataatgccta tttaccggaa agtgttgcct gtgtgctgaa aatcttgaaa gattttgtgt
    21721 atcaatatgt gatttgtgat gccaaaaccc agcgggtgga acgcaagggg caacgcattc
    21781 taatggaatt gttcgatatt ttaagcagtg atccgatgcg attactccct aataatgtgc
    21841 gggaacgttg gaaaaatgcg gaagaatcta agcgtgcaag ggtaatttgc gactatttag
    21901 ccggtatgtc tgatgggcag gcgtttaaac tttttgaaag tttataatga actttgttaa
    21961 ttttgcaagg tctcagtaat aggtttcatt tatttaatag gagatttcaa tgaaaactgt
    22021 ttctaaaggt cttttagtat tagcaacttt ggcttctgca acagcatttg cggtttcttc
    22081 caagtgaaat ttatcagcct cgtggcgaat tagttaaagc agatcgtcaa ggtaatggtg
    22141 agtttgaagt agaatatcgt gtcagtggta atgatgttcg tggcttagcg aaaagtgcga
    22201 tcgcccacgc taaacgtaaa ggtttccatt tagtagaatc tgatattcat agagatgatg
    22261 ctgatttaaa attcaaacgt ggtgaccaag agctggatat tgaaattgaa gtaaaaggta
    22321 gaaatcggat tgaatataag gcagatctag atttagataa aaactaaatt taccccttaa
    22381 aacgaccgct tgtgtgattt aaccgcacaa gcggtctttt tattgtgctt ttttgcaaaa
    22441 atactcaagc cgaccggtcc cggaatttgg taaaatagcc gtttaaatga caataatgat
    22501 gcttttactt attacttaga ggaaaaaatg tttttagtcg gtcagcgttg gctaagtgaa
    22561 tcggaaaata atttaggttt gggaatcgtg acttcggtgg atcatcgcac tgtcactatc
    22621 aatttcccgg cagcggaaga agagcgggtc tatgcaattg cagttgcacc tttaactcga
    22681 gtgcagtttc aagccggaga tagaattaac agtatagatg gctggcagtt agaggtttca
    22741 gaggttgtgg aaaatcaagg tgccgtaatc tatttgggca aaagggtgga taacggtgaa
    22801 gaagcggtac tgcctgaaat gttgctcgat cataaaatca gtttcagcaa accgcaagac
    22861 cgcctttttt cggctcagat tgatcgctca gatcgctttg cattacgctt taacgctttg
    22921 cagcaccagc aagcgcaata tcagtcgcca ctgcgtggtt tgcgaggcat tcgagccagc
    22981 ctgattccac atcaattaca tattgcaaaa gaagtcgggc aacgccttgc tcctcgtgtg
    23041 ctattagccg atgaagtggg actgggtaaa actattgaag ctggtatgat tttgcaacaa
    23101 cagctatttt cgggcagagc agaacgagta ttggtattag tgccggaaag tttgcaacac
    23161 caatggttgg tggaaatgct tcgccgtttt aatctgaaat tctcgttatt cgatgaagaa
    23221 cgttgtagtg attttgataa acaagatgaa aatggcgatg atgtaagtga aaatccattt
    23281 gagagcgaag cgttagtcat tacttcacta aactggctgg aaacctcacc gcaacgagcc
    23341 aatcaagtgc ttgctgccga ctgggatcta ttaattgttg atgaagctca ccatttagaa
    23401 tggtcggaaa ccgaatcttc tatcggctat cagttggtag agcgtttatc tcaacaaatt
    23461 cctgccgtct tgcttttaac ggcaacaccg gagcaattag ggcaagagag ccattttgcc
    23521 cgcttggcgt tgttagattc ggatcgtttt tatgattatg ccgagtttgt acaggagcaa
    23581 gcacagtata aaccggtggc agatgcggtg agtagcttat taagcgataa accgctaagt
    23641 aatgacgagc agaatgcgat tgcggagctg ttaagcgagc aagataccga gccgatgttc
    23701 cgtgcaatta atagcaaaaa atcggacgaa aatgaccgct tgcaagcccg tcaagagctg
    23761 attagtgagc taattgaccg ccatggaacc agccgggtgt tgtttagaaa tacccgtcag
    23821 ggagtgaaag gcttcccaca tcgggaatac caccaaatca gcctagaaat gccgaaacaa
    23881 taccaaaatg cgttaaaagt gatgggaatg atggggagtg tgagccaaag tgatttgctc
    23941 tatcctgaat atttgttcca acgaatgaac ccgaatgcga aatgggctga attcgaccct
    24001 cggattgatt ggctcatcac tttcttaaaa aatcatcgtg atgaaaaagt gctggtgatc
    24061 tgcaaacagg cggacactgc gattgctttg gagcaagttt tgcgtgagcg tgaggcgatt
    24121 cgttctgccg ttttccacga gaaaatgtcg attgttgaac gtgacaaagc tgccgcctat
    24181 tttgctcaac aagaagaagg cgctcaggtg ctgattagtt caagcatcgg ttcagaaggg
    24241 cgaaatttcc aatttgctaa agatttagtg ctgtttaatt tgccggataa cccggattta
    24301 ttggagcaaa gtattgggcg attagatcgt atcggacaga aaaatgacat tcagatttat
    24361 gtgccttgct ttaatttatc ggctcaacag atgttggcag agtggtatca caagggcttg
    24421 aatgcgtttg aagaaacctg cccgatggga acagcgatct tccgtgaatt aggtgaagaa
    24481 ttgcaacaat tcctgcaaaa acctgaactt tcagcccaat ttgatgattt tgttgcgaaa
    24541 acctataaac gccaacagta tttgaaagcc gaactggaga aaggacagga cagattatta
    24601 gaactgaatt ctaatggcgg agaagcagct caacagctcg ctaatgatat tgcgaaagaa
    24661 gataataatc cgcagttggt taattttgcc ttgagtttgt ttgatgtgat tggcgttgaa
    24721 caggaagatt taggcgagca gagcattgtg attagcccaa ccggacatat gcttgtgcct
    24781 gatttcccgg ggctatcgga agatggcacg accattacct ttaatcgtga actggcgtta
    24841 atgcgggaag aggtggaatt tctcacttgg gatcacccga tgatccgcaa tggtattgat
    24901 ttaatcacct ccggcgatat tggcaaatca gcaatctcat tgctggtgaa taataaattg
    24961 cctgccggta cattattact tgaggcgctt tatgtggtgg aagcacaagc accgaaaggg
    25021 ctaaatttaa cccgtttcct accgccaacc ccgattcggg ttttagtgga taacaaaggc
    25081 aacaatattg ctccgcaggt ctcttttgcc gggcttgaac gccaattaaa accggtgaat
    25141 aaacagatgg caaataaaat tgccaaaatg gctcgagcgg atattgaaaa attaattaaa
    25201 gcgagtgaaa aagcggtaga acctcaggtc caacaggtga ttgaaactgc caaatttgag
    25261 gcaaatagca aattaaaagc agaattacac cgcttggaat cactcaaaat ggtgaataaa
    25321 aatattcgag ccgatgaagt tgaagcctta gaacaacagc ttaacgcttc ccttgcccaa
    25381 cttgaaacgg caaattatcg cttagatagc ttgcgagtga ttgtaagtaa taaagcgtaa
    25441 ttttttgcaa gtacgaaaag tgattttttc gatctgtgtc gaaaaaatca cttttctatt
    25501 ttgtgtcatc cttgcagatt atttatgcta ttcctcatat tgtaaaaggt ataaaaaagg
    25561 aatattatgt atatagattt gcaatatgct gtgccgttat tgtttgaata cgacccgaac
    25621 aaaagccaaa ttaatttagc caaatatggt attgattttg aacaggcaaa gttgctttgg
    25681 gaagatgaac gaaaagttgt actggaggct tgcattgaac ccgaattacg ctatttcctg
    25741 attggcaaga tttatgataa atattggaca gcgtttttta caccaagaaa tgatgttatt
    25801 cgtttaattt cagttagacg ttcccgtaaa aaagagatct catactatga gaaataccat
    25861 tagtgccgaa gaattagaac gtatcttcga tgaaggcaaa gaagatattt tacaatactg
    25921 cgatctttct accgctcatc gcccggggca aatgaaaagg gtgaatgttg atttcccaaa
    25981 ttggatggta gaagcgttag ataagcaagc cagacattta ggtgtgcctc gccaagcctt
    26041 gattaaaatg tggattgcgg aaaaattacc ggttcaatca cctaggtaag cgagtggcaa
    26101 atggcattaa ttgaatataa ccctccatta gaaccatttt tagatgaggt ttatcgggat
    26161 aaccatattt tagtaattaa taagcctagt ggtttattat cggtgccggg caatcgtccc
    26221 gaatattacg acagtgcaat gactcgagta cagcaaaaat atggctttac cgaaccggct
    26281 catcgtttgg atatggcaac aagcggtatt cttttgttcg ccctaagcaa agcggcggaa
    26341 aaagaactaa aacgccaatt tcgggaacgt gaaccgaaaa aacactatat tgcgttactt
    26401 tggggcaaat taggtgaaaa agttggggat aagggcgaaa tgaattttcc gctgatttgc
    26461 gattgggaaa atcgcccccg ccagaaaatt tgctatgaac gaggcaaaaa agccattacc
    26521 cattatgaag tgttagctca ttatccgaat aatatagcga gagtaaaact cacgcctatc
    26581 acggggcgtt cgcatcagct acgagtacat agccttgcgt taggtcaccc gattattggc
    26641 gataagtttt atgctaatcc gctggcaaaa agtttatcgc cccgtttatg tttgcacgcg
    26701 gagtcactaa caattactca cccgattaca agggagttga tgacgtttac tgctgagccg
    26761 actttttagc ctcgttcagt aggtgtttgt aatatgccca atcaaaatat tgccccgggt
    26821 cgattttccg ttccggggca atatggcaat gcccggtgat gcgttcatcg gtaatttgtg
    26881 gatagctttg ctgaatggct ttggtcaaat ttgccaaaga ttggtattga gcttgagtaa
    26941 acggctgatt attactgcct tccagttcaa tgccaatcga atattcattg catttctccc
    27001 gcccttcaaa acaagagacg ccggcgtgcc acgccatatc gttaaaattc acatattgcg
    27061 tgatttcccc ctccctatta atcaaacaat gggcggaaac ccgtagatct ttgatttctt
    27121 caaaataagg gtgagcggtt ggttcgagtt taccttggaa aaacagatcg ataaaatttc
    27181 caccaaattc ttccggcggt aagctgatgt agtgaataac caacaaggaa atatcctctt
    27241 gatcaggacg ttggctaaaa tgcggagacg gcacttgttt ttgaccggtt aaacagccct
    27301 gttcgatttt taaatttggc atagtctaaa tagggtgaat acgttaaaat atggctcatt
    27361 ttactagaaa aagagaagaa tatgttaagt tatcgccaca gtttccacgc aggcaaccac
    27421 gctgatgtgc taaaacacat tgtccagctt ttgatcttgc gagcattaaa agaaaaagaa
    27481 aaaggttttt tatatcttga tactcactcc ggtgtggggc gttatagtct gttaagtttt
    27541 gaatcggaaa aaacaggcga atatttagag ggcgttgccc gtttatggga gcgtgatgat
    27601 ttaccggaag aagtggcatt ctatattgat gagctgaaaa aattaaaccg tggcggcaag
    27661 ttaaagtatt acgcaggctc cccattattg gcggtacagc aactgcgtga gcaagaccga
    27721 gccattctta ccgaacttca ccccaatgat tttccgctgt tacgacaaga atttgccaaa
    27781 gcgaaaaatg tgcaaaccaa gcgagaaaat ggctttcaac aattaaaatc cgccctgccg
    27841 cctaaagagc gtcgaggttt tgtgttgatt gatccacctt atgaattaaa agaagattat
    27901 gaattggtgg ttaaagcgat agaagagggc tacaaacggt ttgccactgg tgtgtatgcc
    27961 atttggtatc cggtggtgct tcgccaacat accaaacgta tagtgcgagg tttaatggat
    28021 accggcattc gcaaaattct acaaattgag cttgccgttc gtcctgatag cgaccaacgt
    28081 ggaatgacgg caagtggtat gattgtgatc aacccaccgt ggcagcttga aacccagatg
    28141 aaaaaaatcc tgccatattt aaccgaggtg cttgtgccgg aaggaacagg ttcttggaag
    28201 gtggagtgga ttacgcctga gtaaattaaa tacggatagc acaagcgtgg acgcttgcgc
    28261 catcataaat tctgatttgc aatatttttt agaaaaataa ccgcttgtct tatcaagaag
    28321 tgggggaaat ataaaaggaa aaaacgatgc aacaatacaa acacgacttt attgaatttg
    28381 ccttaagccg caatgtgctg aaatttggcg aatttacctt aaaatcaggc agaatcagcc
    28441 cctatttttt caatgctggg ctttttaaca ccgggcgcga tttagccaaa ttaggcgaat
    28501 attacgccaa agccattcaa gccagcggca ttgagtatga tgtgttattc gggccggctt
    28561 ataaaggcat tccgattgca accacggttg ccgtggcact agccaacctg ttcgatgtgg
    28621 ataaaccttg ttgctttaac cgcaaagagg caaaagatca cggtgaaggc ggtaatttaa
    28681 tcggttctcc cttaacgggc aagattttgc tggtggacga tgtgattacc gcaggcacgg
    28741 caattcgtga gtcgatggaa attatcaatg ccaataatgc ccagcttgcc ggtgtgctga
    28801 ttgcgttaaa ccgtaaagag aaaggcaagg gcgagttgtc tgcgattcaa gaagtcgaac
    28861 gtgattacgg ttgccaagtt ttctcgattg tggattttga tgatttggta gcatttattg
    28921 aaacgtcgcc acaatacgct ccttatttgc cgaaaatgcg tgaatatcgt gaaaaatacg
    28981 gtgtttaact tttgcaaaaa aacagcaaaa actcaccgct tgtcactctc taatctcacc
    29041 attatgaatc actttcatct tttggtgaga ttttttcaat taaaaagccg ataaattgat
    29101 tgtgagcttt agctaattgg cttaggataa actcctgtaa tacaggagtt ggagaactaa
    29161 aatggcacat caaaaattac cttttcacgc agacaccgtt ggctcatatt tgcgttccga
    29221 tgcttggaaa aaagctcacg cagactataa agcaggcaac atttccctcg aacaacgtga
    29281 tgaaattgta gaagcggaag tgaaaaaatt agtacaagca tcaattagat gcgggcattc
    29341 aagttgttac agacggcgaa tatcaccgct cttggtggca tattgatttc ttggaaaatc
    29401 tgaacggcat tgaaggctat gtgccggaaa aagcctatgc gtttaaaggg gttgaggttc
    29461 gcccttataa tacacgttgt tgcggtaaag tgtcttggaa tccgaatcac ccttttattg
    29521 agcatttcaa aaaattcaat gcgattgtag gtggtcgtgc ggtggcgaaa tttaccattc
    29581 caagtccaaa ccaattaatg tacccgattc agtgggatca cggcatttac ccaaaccgtg
    29641 aggaatttgc caaagatgtg caacaggctt ataaagaggc gattaaagcg ttctatgatg
    29701 ccggctgtcg ttatttgcaa attgatgatg tctattgggg gtcgttgtgt aataacgttg
    29761 gtcaaccgac atttgaagcc gataaagctc aagcggtggc gaatattcaa gccattcttg
    29821 ccgataagcc ggaagattta accattacca cccacgtttg ccgaggcaac tataaatctt
    29881 cttatttatt gacaggggct tatgatccga ttgccgacgg cttatttgct caaaccaact
    29941 atgatgggta tttcttagaa tatgatgacg agcgttcagg cggttttgag ccgttaaaac
    30001 attttgccaa caacaaaggg cgtgtggtat tgggcttaat tagttcaaaa ttccctgaat
    30061 tggaagataa ggaagcggtt aaagcccgta ttcaagaagc ggcaaaatat gtgccgttag
    30121 agcagctttg cctaagcccg caatgtggtt ttgcctcaac cgaagagggc aatattatgt
    30181 cggaagcaca gcaatgggcg aaagttcgtc ttgtggagga aatcgcccaa gaagtttggg
    30241 gcgaagatta attagagtga aaaatgcccg taacaagcgg gcattttttg tgaatttttt
    30301 gcaaattcaa gccatttagc gaatgcggtt aaaaccttgt tctaaatcgg caatcaaatc
    30361 ttccaccgct tccaagccaa cgtgaatgcg aattaatgtt cccgtcagtt tgcgttcaat
    30421 cgccgggcgg attttggcaa tttcttccgg ctgattggca agaatcagcg attcaaaccc
    30481 accccaagaa tacgccattg aaaacagttc aaaatgctct aggaagttgg ctaatttgtc
    30541 attcgagagc ttttcgcaaa gttcaaatga aaatagaccg cttgaaccta aaaaatcccg
    30601 cttaaaaaat tcgtgccccg ggcagctttc caacgccggg tgataaactg ctttcacttc
    30661 agggcgttga gccagccagt tagctaccgc aatgctactt tgttcgtgct gttttaagcg
    30721 aatgcctaag gtgcgtagcc cccgagcggt gatgtaagcg gaatcagcat ccaccatttg
    30781 ccccattaaa taagagcctt cacgcagttt atcccaacaa cgggcgttag aaaccgcagt
    30841 accgatcatc acatcagaat gcccgactaa atatttagtg ccggcttgaa tggaaatatc
    30901 aatgccatat tctaaagcag ggaacagcac accggcagac caagtgttgt cgatcataat
    30961 cacgatttct gggttgattt cacgagcaac acgcacgaga gtcggaatat caggcacttc
    31021 cattgttagc gagctcggcg attctaaaaa aagcactttg gtgttcggtt gcacaagggc
    31081 tttcaagcct tcaccaatca tcgggtcata ataagtagtt gaaacaccca tacgttttaa
    31141 cagcgcatta cagaattctt gtgtcggttc gtaagctgcg cctgtcatta aaacgtggtt
    31201 gccttgttcc acaaaagcta aaatcgcatt ggtgactgcc gccgcaccgc aagggtaaag
    31261 gtagcaacct gctccacctt ctaattcaca catcgcttct tgtaatgaaa aatgagtgag
    31321 agtgccacgt ctgccataaa ataatgctcc tttgtagcgg ttttgtgtag cgtgtttttt
    31381 ctcttctaag gtttcaaaca ctaaagatga agcacgctga atcaccgggt taactgctcc
    31441 ttgtgtgtta cgttttttac gccctgtatg aacaagtttg gtggaaagat ttttatagtt
    31501 agacataact tttcctaaag taaaatgcat aggggcaaat caacatttgc ccctttatta
    31561 ataattaacg aaacataaag ttatttcttt gacggctacg tttaaattgg ctgattagca
    31621 caatgaccgc aacaattaag taaaccgcaa aagtaaagat tagccattgt gccattgaaa
    31681 agccgaacat ttcccattgg ctttggctac aattaaccgg accgggggca aacacttgtg
    31741 gtagccattg gtcaagcggc aaggtttgcg ggaaattaac tttaaattcg cattgattcc
    31801 atggtgatgg attgacctga taatcgtggt gtttgattga aagtactagc cctttaaatg
    31861 cgctaccaag ccaaattaga attgccaagt agcgaataat cgcatatcta ttaccaagaa
    31921 atcctaaaat accggcaaat aaaataccaa ataaagcaac tcgctcataa atacacatta
    31981 cacaaggtac taatcccatc ccatgttgga aataaagcgc tgtgccttca agtataagac
    32041 agcttaacat tagtaaaaac catgcactgc gagattgtga tagattttta aaaaaataga
    32101 gcatagttat tcctcatttt gtgaacttaa ggcattctac cttatttggt atgagttatc
    32161 tataaactaa cgtgtaataa accatcccca atttatcatt acttcagtca tagaaggtag
    32221 taagaattct aaccctaaga aaccgacaat agatagaaca atggtataag gtaatgccat
    32281 atagaccatt ctgccgtaag acagtttaat taacggcgca aaggaggacg ttaataagaa
    32341 taagaaagca gcttgtccgt ttggggtagc aacagaagga agatttgtgc cagtattaat
    32401 tgcaactgca atcaggtcga actgctcacg atctataatg ccggcatcta gtgcggtttt
    32461 agcttcatta atgtaaacag taccgacgaa gacgttatct gaaatcatcg agagcaaacc
    32521 attgaaaata tagaataatg aaagctgtga atgtggttcg gcagataaca caaaggcaat
    32581 gatcggctca aataatttta aatcaataat cacggcaaca accgagaaaa acacaataag
    32641 caatgcagta aaaggcatag attcttggaa tgctttccct aaagtgtgtt catcagtaat
    32701 gccacaaaat gcagtgcaaa taatgatgat ggttaagcca ataatcccta catcggcaag
    32761 atgtagcgct aagccaataa ttaaccaaat tccagcaatg gcttgcacca gcatctttaa
    32821 gcgatcttgt ttcgtcattt tttgttcttt tagttggcta tagcgagcga gtacgcccca
    32881 aactttgcta ggaagccggt ctccataacc aaataattta tatttttcta caagaaagca
    32941 ggtcgcaatc ccacaaatta acacgggtaa gctaactggt aatgctctaa gtaagaattc
    33001 gataaatccc cattccgctt gggaggcaat aattaagttt tgtggttctc ccaccatggt
    33061 cattacgcca cctaaagctg agccaatacc ggcgtgcatc aataaacttc ttaaaaaacc
    33121 acgaaattgc tctaaaattt ctttattaga gatgattttt tcatcattgg taatatcagt
    33181 agaatcttca aagttattac ctgatgcgac tttatgatat acgccgtaga aacctgttcc
    33241 aacgctaatg attacagcaa taaccgttaa agcatcaaga aaggcggata aaaaagcagc
    33301 gcttaagcag aaagaaaggg aaagaatttt tttcgaatga atggcgacaa gcagtttggt
    33361 gaaaatataa agcaataatt gcttcataaa gtaaataccg gcaaccataa acattaaaag
    33421 aagaataaca tcaaagtttg ccataatttc ttctttaatg tggtgaggat ttgtcatacc
    33481 gattacaact gcttcaatcg ctaataaacc acctggctgt aatggataac attttaatgc
    33541 catagagaga gtaaaaataa attcagcgac tagaaaccag cctgcaacaa aaggattgat
    33601 aaagaaataa atgagaggat tgataattaa aaatgccaaa atgcacaatt tataccactc
    33661 ggggcttttt cctaagaaac ttttgaacag agcatcaatg ctactcatat aaaggacctc
    33721 aaaatttgta aacagatatt acaattgtaa tatagtttag attaaaggat aatagtatta
    33781 ctgaactttt tagtcgcaat aattgattag aaataaagaa tagttagatt ttagataagc
    33841 atattttttg cttggggggc attaatgggt cacagtgata ttttaaaagc gcaaagcccg
    33901 gcagcgttag cggaagaata tattgtaaag agtatttgga ataatcattt ccctgccggc
    33961 tctgatcttc ctgccgagcg agagttagca gagcgcattg gggtaacaag aacaacttta
    34021 cgtgaagtac tacaacgtct agcgcgagaa ggttggttaa gtattcagca cggcaagcca
    34081 acaagagtga atgatatttg ggaaacttcg gggcctaata ttattggcac tattattaag
    34141 ctagataaaa gctatcttcc agtggtgatt gccaatgtgg tgtcattacg tactcgtatg
    34201 gcggaggctt atattccaga agcgatttac cttgctcctg aagaaagtgc taaactcttt
    34261 gatggactag atgaattaga aaatacagca gctgcttatg ctgaatttga ttataagtta
    34321 ttcagacaat ttactttttt agccaataag cctgtgtatg cgttgatcct aaatagcttt
    34381 aaatcaatgt atcatcaagt cgcaaaaatt ttctttgctg atgaaaataa tcgtcaatta
    34441 acgttaagct tttaccgttc attattatgt acttgtcttg caaaagatag tgaaaaagca
    34501 gccgcttgta tggctaaaaa tcgccaatct agtggtgaaa tttggcaaaa attatccgct
    34561 aatattcctg aaagctttgg tcagctttaa cagaaggtag aattttgaac gaaattattt
    34621 ttagcttaga accgcaagat aatgctcgtc tgcaatcgct ttgtggtgca tttgatgagc
    34681 atttagcctt aattgaaaaa agttttaatc tcattattgc tcgaacaggc ttcaacttta
    34741 cgattcaatc ggaagatgac aatcactatt ctgctacctt ggttcaaaat agtgtgaagc
    34801 tgattaagca actgtataat gaaactgccc cgattaaagg caaaattaag gaattggact
    34861 tagaagatat acatttggcg attcaggaaa gccgaatgct actacaaaac caatggcaag
    34921 ccggctcgca aggcgaaata gcgattaaaa ccaagcgagg ggtgattaaa cctcgtagcg
    34981 aacatcaaca agcctattta cgaaatatat taagccacga catcagtttt ggtatcgggc
    35041 ctgctggcac aggcaaaacc tttttagcgg tagcggcagc ggtggaatcg cttgaacgcc
    35101 aagaaatccg ccgtatttta cttacccgtc cggcggtgga agccggtgaa aagctcggtt
    35161 ttttacccgg cgatttaggg caaaaaattg agccttactt acgcccgtta tatgatgccc
    35221 tgtttgaaat gcttggcttt gaaaaagctc aaaagttgat ggaacgtggt gtgattgaaa
    35281 ttgccccact tgcttatatg cgagggcgta ctttaaacga tgcgttcatc attttagatg
    35341 aaagccaaaa cacgactacc gagcaaatga aaatgttctt aacccgtatt ggctttaatt
    35401 ccaaagcggt gattaccggc gatattaccc aagtggattt gccccgtagc caaaaatcag
    35461 gcttaaaaca cgcaatggaa gtgctaaaag aagtgccgga actcagcttt aatttctttg
    35521 acagcaaaga tattgtccgc caccctgtgg ttgccaaaat tgtgcaagcc tatgatgcgt
    35581 gggaagcggt tgatgaagag cgtaaagaac agcgaaaact ggaaaaatta gctttagagc
    35641 aagaaaaaat tcttgctcaa gctgaaatgt tatagcttac aagcggtcat atttcgctaa
    35701 ttttttgcaa aaaatcgctg aaatttcacc gcttatcata acagttgttc aacaaaaaag
    35761 cgggaagtta attcccgctt ttctttatct tattgtttca ttataagatt tcttttgctt
    35821 tagcaaccac gttttcaacg gtaaagccga agagtttgaa taattgatct gctggtgcgg
    35881 attcaccaaa gctattcata cctacaattc gaccatcaaa gccgacatat ttataccaga
    35941 agtcagctaa ttgagcttca atcgccacac gtttagtgac tgaacgtggt aataccgatt
    36001 cacgataggc ttcatcttgt ttgtcaaaca cgttggtgct tggcattgaa actacacgca
    36061 ctttcacgcc ttctgcatct aacacatcag cggctttcat tgctaaatct acttcagaac
    36121 cggttgcaat taagattaaa tccgggcaac tgcctttttc gcaacattca cgcaagatat
    36181 agccaccacg agagatgttc gctaattgct ccgcagtacg ttgttgttga gccagatttt
    36241 ggcgggtaaa gattagtgct gtcgggccgt ctttacgttc taccgccgct ttccaagcaa
    36301 cagcagattc tacttggtct gccggacgcc aggtttctaa gtttggaatt tggcgtaatg
    36361 aagcagtttg ttctaccggt tggtgggtcg ggccgtcttc acctaaaccg atggagtcgt
    36421 gtgtataaac aaataaggca cgttgcttca ttaaggctgc catacgcacc gcattgtgtg
    36481 catattcgta gaacattaag aaggttgcac cgtaaggaat gaaaccaccg tgtagggcaa
    36541 tcccgttcat aatcgcagac ataccgaatt cacgcacgcc gtagttgatg tagttaccat
    36601 ctacattgtg ttccgcacga atcggttttg agccagacca taaggttaag ttagagcttg
    36661 ctaagtcagc tgagccgccg aggaattcag gtaagattgg cgcgtaagct tcgattgcat
    36721 tttgtgatgc tttacggctt gcaatggttg ccggatttgc ttgtaatttt tcaataaaag
    36781 ctttgctttc agcttcccag ttagccggta attcgcctgc gtaacggcgt ttaaattcag
    36841 cggctagttc agggtatgcc gcttcataag cagcaaattt agcgttccaa tctttttctg
    36901 ctaatgtacc ttttgctttt gcatcccact ctgtataaat ttcagctgga atcacaaatg
    36961 gggcatgttc ccaacctaaa aattcacgag cggcttggat ttcagcatca cccaatggcg
    37021 caccgtggca atcgtgagag tttgatttat ttggtgaacc atagccgata atggttttac
    37081 aaataattaa agttggacgc tcggtttcgg cttgtgcatt ttcaatcgca aatttgattt
    37141 gttctgggtt atggccatcg acattacgga taacttgcca gccataagac tcaaagcgtt
    37201 gtgcggtatc atcagtgaac caaccatcaa cgtggccgtc gatagagata ttgttatcat
    37261 cgtagaaagc aatcagtttg cctaagccta atgtaccggc gagagagcaa gcttcgtgtg
    37321 agataccttc cattaaacag ccatcgccta agaaagcgta agtgtagtga tcgacaattt
    37381 tatgaccttc acggttaaat tgtgctgcaa gggttttttc cgcaatcgct ataccgaccg
    37441 cattggtaat accttgacct aacgggcctg tggtggtttc aacacccggt gcataaccat
    37501 attcagggtg accaggtgtt ttagaatgta actgacggaa ctgttttaaa tcttcaatag
    37561 agagatcata gccggttaaa tgaagtaagc tatagattaa cattgaaccg tgtccgttag
    37621 acagaacaaa acggtcacga tctgcccatt taggattagt tggattgtgt tttaaaaaat
    37681 cacgccataa aacttctgca atatcagcca tacccattgg tgcgcctggg tggcctgagt
    37741 tagctttttg tacagcatcc atacttaaaa aacgaattgc attcgctagc actttacgtt
    37801 ctgtcatttg tgttactcct aatcgagaat gttatataaa atggaaagga tatcgaattg
    37861 gattctacac tattttgcta gaaaaactca aaaatggaaa tgagaaatgt gatctgtatc
    37921 acaaaaaatg attaaattgt gatttgtttt gattggattt taatagacgg ttttttccta
    37981 atacaatatt ttcttgataa agcgaatgtt tagtagttga tctaggcaac aaatttatct
    38041 aaaatacgca ctctttttgg cgttgagcat ttgctcaaca tttttattaa ttacatatgg
    38101 tacctatcag cggtagagat tctaacaaga taggcggcga tatggcttct tatgaggttc
    38161 cccaatgaaa caaggtattc acccagaata taaagaaatt acggcaactt gctcttgcgg
    38221 taatgtagtt aaaactcgct caacagtggg taaagattta aacttagacg tatgtggcaa
    38281 ctgccacccg ttctatactg gtaaacaacg tgttgttgac accggtggtc gtgttgaacg
    38341 ctttaacaaa cgtttcagca tcccaagctc aaaataattt gattattgca aaccccgcta
    38401 atgcggggtt ttgtttttct tatatatcga attaacaagc ggtgtatttt tctatcaatt
    38461 ttgcaaattg gtgatttaac cattttgcag gagctaccag agaaaaacct cgagtatcat
    38521 tattatcctc ggtccattta tctgcgatca ccataaaagt ttcaacatct ttcttaggtt
    38581 ttggatacca gcgtgcaata ttagctggat gattggcata aaatgagagc aatttcttgc
    38641 ctaatgcaca agaaatatgg acaccacctc catcaactgc aattacaata tcagcagagt
    38701 ttactaatgc acaataacct aaaatatcac tattaggtgc taggcttatt tcaaatgggg
    38761 ctttaatttt cgacaaatat tcggcactat tggttgtatt ggtcagcaaa caactaatat
    38821 gttgaacata tcttttatca atcatagata atagctctga taattcttga gtagaaattt
    38881 cacgcatact accttgagga ttcaatagta atcgaatttt cttctcttgc catagcgtat
    38941 ttgcaaaact gcttagttca ttaggaatgt ttaaattata attgacctga tttttttcta
    39001 aaaaatcagc aaaaatagca tagttgagat agtcagcaaa atgaacctgc tttggaaaga
    39061 cagt
//
LOCUS       DANLXK010000008        37079 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.008, whole genome shotgun sequence.
ACCESSION   DANLXK010000008 DANLXK010000000
VERSION     DANLXK010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37079
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(31..821)
                     /locus_tag="PXD88_000320"
                     /pseudo
     CDS             complement(31..821)
                     /locus_tag="PXD88_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            complement(818..1519)
                     /gene="lpxH"
                     /locus_tag="PXD88_000321"
     CDS             complement(818..1519)
                     /gene="lpxH"
                     /locus_tag="PXD88_000321"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL6279938.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            complement(1594..2115)
                     /locus_tag="PXD88_000322"
     CDS             complement(1594..2115)
                     /locus_tag="PXD88_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL6279939.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            complement(2125..2913)
                     /locus_tag="PXD88_000323"
     CDS             complement(2125..2913)
                     /locus_tag="PXD88_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL6279940.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            complement(2918..3202)
                     /locus_tag="PXD88_000324"
     CDS             complement(2918..3202)
                     /locus_tag="PXD88_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6279941.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            complement(3195..3437)
                     /locus_tag="PXD88_000325"
     CDS             complement(3195..3437)
                     /locus_tag="PXD88_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL6279942.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            complement(3568..4545)
                     /locus_tag="PXD88_000326"
     CDS             complement(3568..4545)
                     /locus_tag="PXD88_000326"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL6279943.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            complement(4545..5165)
                     /locus_tag="PXD88_000327"
     CDS             complement(4545..5165)
                     /locus_tag="PXD88_000327"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL6279944.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            complement(5176..6210)
                     /gene="mltG"
                     /locus_tag="PXD88_000328"
     CDS             complement(5176..6210)
                     /gene="mltG"
                     /locus_tag="PXD88_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL6279945.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            complement(6303..6378)
                     /locus_tag="PXD88_000329"
     tRNA            complement(6303..6378)
                     /locus_tag="PXD88_000329"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6343..6345),aa:Lys,seq:ttt)
     gene            complement(6400..6475)
                     /locus_tag="PXD88_000330"
     tRNA            complement(6400..6475)
                     /locus_tag="PXD88_000330"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6440..6442),aa:Lys,seq:ttt)
     gene            complement(6498..6573)
                     /locus_tag="PXD88_000331"
     tRNA            complement(6498..6573)
                     /locus_tag="PXD88_000331"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6538..6540),aa:Lys,seq:ttt)
     gene            6790..7317
                     /gene="ppa"
                     /locus_tag="PXD88_000332"
     CDS             6790..7317
                     /gene="ppa"
                     /locus_tag="PXD88_000332"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL6279946.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            7373..8128
                     /locus_tag="PXD88_000333"
     CDS             7373..8128
                     /locus_tag="PXD88_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL6279947.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(8192..9223)
                     /gene="trpS"
                     /locus_tag="PXD88_000334"
     CDS             complement(8192..9223)
                     /gene="trpS"
                     /locus_tag="PXD88_000334"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL6279948.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(9350..9682)
                     /locus_tag="PXD88_000335"
     CDS             complement(9350..9682)
                     /locus_tag="PXD88_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL6279949.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            complement(9679..9939)
                     /locus_tag="PXD88_000336"
     CDS             complement(9679..9939)
                     /locus_tag="PXD88_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL6279950.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            complement(10009..10677)
                     /locus_tag="PXD88_000337"
     CDS             complement(10009..10677)
                     /locus_tag="PXD88_000337"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL6279951.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            complement(10764..11561)
                     /gene="lgt"
                     /locus_tag="PXD88_000338"
     CDS             complement(10764..11561)
                     /gene="lgt"
                     /locus_tag="PXD88_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL6279952.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            complement(11569..12357)
                     /locus_tag="PXD88_000339"
     CDS             complement(11569..12357)
                     /locus_tag="PXD88_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL6279953.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            complement(12359..13003)
                     /gene="rppH"
                     /locus_tag="PXD88_000340"
     CDS             complement(12359..13003)
                     /gene="rppH"
                     /locus_tag="PXD88_000340"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL6279954.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            13615..14760
                     /gene="lldD"
                     /locus_tag="PXD88_000341"
     CDS             13615..14760
                     /gene="lldD"
                     /locus_tag="PXD88_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL6279955.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            complement(14814..15083)
                     /locus_tag="PXD88_000342"
     CDS             complement(14814..15083)
                     /locus_tag="PXD88_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279956.1"
                     /translation="MLSEERFGFFYIFIFIYFSLLSLSIGYIRPELRTTYDYLEIENK
                     RYYVLSIHRNNIYVLGEKTKDNDEFLFFNQDTLKYYRINITKMPN"
     gene            complement(15158..15544)
                     /locus_tag="PXD88_000343"
     CDS             complement(15158..15544)
                     /locus_tag="PXD88_000343"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279957.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTSI"
     gene            complement(15797..16627)
                     /gene="fghA"
                     /locus_tag="PXD88_000344"
     CDS             complement(15797..16627)
                     /gene="fghA"
                     /locus_tag="PXD88_000344"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL6279958.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(16707..17765)
                     /locus_tag="PXD88_000345"
     CDS             complement(16707..17765)
                     /locus_tag="PXD88_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL6279959.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(17952..18887)
                     /locus_tag="PXD88_000346"
     CDS             complement(17952..18887)
                     /locus_tag="PXD88_000346"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL6279960.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
     gene            complement(19167..19478)
                     /locus_tag="PXD88_000347"
     CDS             complement(19167..19478)
                     /locus_tag="PXD88_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6279961.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(19485..19877)
                     /locus_tag="PXD88_000348"
     CDS             complement(19485..19877)
                     /locus_tag="PXD88_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6279962.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            20009..20569
                     /locus_tag="PXD88_000349"
     CDS             20009..20569
                     /locus_tag="PXD88_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL6279963.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(20635..21624)
                     /locus_tag="PXD88_000350"
     CDS             complement(20635..21624)
                     /locus_tag="PXD88_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL6279964.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(21838..22755)
                     /locus_tag="PXD88_000351"
     CDS             complement(21838..22755)
                     /locus_tag="PXD88_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6279965.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(22891..23550)
                     /locus_tag="PXD88_000352"
     CDS             complement(22891..23550)
                     /locus_tag="PXD88_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6279966.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(23735..24799)
                     /locus_tag="PXD88_000353"
     CDS             complement(23735..24799)
                     /locus_tag="PXD88_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL6279967.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            24890..25798
                     /locus_tag="PXD88_000354"
     CDS             24890..25798
                     /locus_tag="PXD88_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6279968.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(25868..26419)
                     /locus_tag="PXD88_000355"
     CDS             complement(25868..26419)
                     /locus_tag="PXD88_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6279969.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
     gene            26611..27972
                     /locus_tag="PXD88_000356"
     CDS             26611..27972
                     /locus_tag="PXD88_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL6279970.1"
                     /translation="MLFLNKIKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQ
                     KNVIAESAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAF
                     GVSGGSILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGD
                     LLQERLNFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDL
                     EISRAVAASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHIL
                     SLYQDSKERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVN
                     AQNEVSSEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSK
                     IEMHFVSLGLKELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALK
                     TLQ"
     gene            complement(28020..28517)
                     /gene="rraA"
                     /locus_tag="PXD88_000357"
     CDS             complement(28020..28517)
                     /gene="rraA"
                     /locus_tag="PXD88_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL6279971.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(28615..29517)
                     /locus_tag="PXD88_000358"
     CDS             complement(28615..29517)
                     /locus_tag="PXD88_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL6279972.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            29626..30588
                     /gene="rluC"
                     /locus_tag="PXD88_000359"
     CDS             29626..30588
                     /gene="rluC"
                     /locus_tag="PXD88_000359"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL6279973.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            complement(30571..30708)
                     /locus_tag="PXD88_000360"
     CDS             complement(30571..30708)
                     /locus_tag="PXD88_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279974.1"
                     /translation="MDLHIFAYILLVQASTLVPLYVDLQHKRGRLRYLTLSLSYLVIS
                     P"
     gene            30697..31554
                     /gene="folP"
                     /locus_tag="PXD88_000361"
     CDS             30697..31554
                     /gene="folP"
                     /locus_tag="PXD88_000361"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL6279975.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            31554..31901
                     /locus_tag="PXD88_000362"
     CDS             31554..31901
                     /locus_tag="PXD88_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL6279976.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            32031..33179
                     /gene="dapE"
                     /locus_tag="PXD88_000363"
     CDS             32031..33179
                     /gene="dapE"
                     /locus_tag="PXD88_000363"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL6279977.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            33290..34624
                     /locus_tag="PXD88_000364"
     CDS             33290..34624
                     /locus_tag="PXD88_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL6279978.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            34731..35240
                     /locus_tag="PXD88_000365"
     CDS             34731..35240
                     /locus_tag="PXD88_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL6279979.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            35269..35490
                     /locus_tag="PXD88_000366"
     CDS             35269..35490
                     /locus_tag="PXD88_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL6279980.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(35555..37063)
                     /locus_tag="PXD88_000367"
     CDS             complement(35555..37063)
                     /locus_tag="PXD88_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL6279981.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
BASE COUNT        10505 a         7768 c         8056 g        10750 t
ORIGIN      
        1 tttttttagg gaaaatctgc aaatgctttt ttagctccat tcaagcgtat aaggcttaat
       61 accaatccct ttactattaa gacagtcttg tagatttcta atattattaa caatattttc
      121 ggtaattagg ttggcttgtt taactttttc ttcagtaaca ttgggatctt tttcgttgaa
      181 taaaatcgca tttaataatc tttctgcgtg cataccctct cggcagtaat gtaaaacacc
      241 gacatcatta aatgcagtag ctacagagct aatttgtgta gtggctatgc ctaaagcacc
      301 atcttctcca cctaattctt ggaagagctg atgttgtgga aagccgccac aagcgaggaa
      361 gaaactacgc cgaaatacag tgttgcctgc accagtcatt tgcatatatt gccaagctaa
      421 ctcaaaatta gggtgagagc tgtaacgttg atctaagtta ccggttttaa tgctaaccga
      481 accaagccgg tttccggttt aaactcaaaa atcttttcag caacttgcaa tgccccgttt
      541 tcataagcat catcagcatc taaaaaggca attaaatctg tttcactttg taatgctccc
      601 cagttgcgtg ctttggcaac accgccattt tgaggcattt gttccactct aattttatca
      661 ggcacttggg cttgtaaatg tttagctaag gcaagcgtat tatccgttga agcatcatca
      721 ataagccaca atagatttaa tccagactga tttaatacac tttgcactgc acgaacaagg
      781 gtgttttcgg cgttatagca aggaataatc acattaatca tataaattca gctccttgct
      841 cggttacgct taaaatagag gcgtaatttt ctttccagtc gcctaataca atgcgggtaa
      901 atccattatg ctgatggatt gcttgtcgat gcgtatgccc gtgtataagt tgagttgtat
      961 tgtattttgc gacaatttga gcggtaactt cagcgtttac gtccataatt tcagcggatt
     1021 tatcacgctt ttcttgtttg cttttggatc gaattttctc cgcaatacga attcgccaag
     1081 aaagcggaaa catcaaaaag atagcttgtc gccatttttg gtggactttt ttacgaaatt
     1141 gttgatattt cacatcatca gtacaaagcg tatcgccgtg gcaaagcaag gtagatgtgc
     1201 cgaataaatc tataacgtga taatcaggca aaataaccat acccgtttgt tcgctgaatc
     1261 gtttgccaat taaaaaatca cgatttccgc aaataaaata gcattttgta ccgcttgtag
     1321 tgagggtttt gattgcctgt ttaacggttg aaatgagttc agactgctca tcatcgccaa
     1381 tccagaaatc aaacagatca cctaagatat aaaccgcttc tgcaagtagt gctttttctt
     1441 gcataaattg caaaaagagg tgggtaattt caggctgatt ttcatttaag tggagatcgg
     1501 caataaaata gtacgtcatt tgatattgtt gataaaaaag aaaacggttc aattttttac
     1561 aaaatcgaac cgtttgtcaa aggttaatcg gcattaatct ttaaaaatgc cacgaataaa
     1621 ttgtactgag aggaagaaca agaacgccaa tacggcataa agtacatagc tcataattgg
     1681 tttgctgact gtttctgctt cttctaatgg cttgattgaa acaatatttc taaattcatt
     1741 tagccaattg attcgccagc cgtaatattt aatttgcaca cgttgttttt cgttagcgta
     1801 ggcttgagct ttggcttgaa tgtcggcaga tccgaatttg aaataaggag gcaaccccca
     1861 gccggtatct tcattacgat aaaccattac ctttttggtt tcaggatctt ccgtgaataa
     1921 gaaataaaca tcgcgcacct cgccatcagc aggattcgct ttgctgataa taccatcttt
     1981 atccattcgg cgtacttcca tacctgttac tacggtatct tcataacttg gcattgcata
     2041 attaactgca ccgcctaata caataaaaaa tgatagtgag acaagaatca gaaaatactt
     2101 aagtattgct ctcatattag ttccttataa tttaatgttg aataagtgtt gcacattttc
     2161 ggttgtaatg cgagctaatt cttcagttga aacgcctttt aatgtcgcca catattcgca
     2221 agtttcccgc acatacgccg gctggttcgg cttaccacga taaggaatcg gggcaagata
     2281 aggggaatct gtttcaacca ataagcgatc taacggcact tttcgcacga cttctcggag
     2341 ttcttctgca ttgcggaaag taataatgcc cgaaattgag atataaaagc cgatgtctaa
     2401 agcccgtttt gccattgccc aatcttcggt aaagcaatgc aacaccccac cgcatttttc
     2461 ggcattattt tgttccaaca tatccatcgt atcttggcgt gccgaacgag aatggataat
     2521 gagtggctta ttgagtttgt ttgcaatttc aatttgttga acgaaaagcg attgttgcaa
     2581 cgctttggtt tccggtgtgt agtgataatc caaaccagtt tccccaatgg caaccacttt
     2641 cggatcttga gcgaactgaa ataatttatc gtaatcaaaa ggttcatctt ccacattcaa
     2701 cgggtgaacg ccacaagaaa gtgaaacgtc attacgatgg gcggttaagt ttttcattgc
     2761 ttcaaaacgc ccaactgtag tgcaaaccga gataaaatga tgcacccctc gggctttggc
     2821 attttcaatt acttcgtcca cgtttttgtg acgagtttcg tagtctagag aatctagatg
     2881 acaatgtgag tctatgataa ataagtcttt catttttcta aatatagcgt ttatgattca
     2941 tttggttatg taagatgcga acaataaata tatgatctgc ttttattcga taataaattg
     3001 tatgagattg atgtgtgtgc attcgcaagc caccacgaat atattccgca gaagttccca
     3061 ttgttggaaa atcagctaat aaattcaaaa tatgctttag atctgcaaaa taagattctg
     3121 tttgttgaac accaaattga gagatactgt aacgaaaaag tttctcttga tctcggagtg
     3181 cttgagcaga aagtttatac attaagttcc gcctttactc tcaacatcat ttcatcaatc
     3241 gtttcggttg cataaccact agcatcacca tcatcaatgg cttgtcgcaa ctgagctaag
     3301 tattgctctt tttcctcaag cattcgtaaa gcggttctca ctacttcact ggtagagcca
     3361 taacgcccac ttgccaccat ttcatttaca aaatcattta aaggttcgcc taaagtcacg
     3421 ctggttgttc ttgccataat attctccttg tgtgaattat tcatacaata acaaagatag
     3481 ataattttgc aagttataaa ctatattcta gggctagaag cctcttttta cggctaattg
     3541 aaagctacct tctatgagag agggctttta ctcaaacacc aaaaccaact tcgtcaggca
     3601 atctagcaac atcaattccg gattgacggc gttaatttcg gttaaatccc gctgggtttg
     3661 ttggagaatt tgatgccctt taagtaagcc gtgggtcgtt agttgttggc taaaagggag
     3721 aatgccgttt tggagatccg ggtttagcca accgtggctg attgccattt tagcttttag
     3781 ggcatcgcta aagaaacttt ccagccattc gagttgctgt aaaatcagct ctttttcttg
     3841 ggcgaaggct tggaataaca agaagacatc gtggcttttg tagaaacgcc agaaggtttg
     3901 caaaaaggtt tttcgctgtt gcaagcggtc attttcgata aaatttttgc aaattagtgg
     3961 gcgtgagtgg caaaggcgga gtgcaatctc taagtcgtcg gttgagattg ccggaaattg
     4021 tgtttgtagc caagccatta cttctgaggc ttgtggggcg taaagtaccc aagtttggct
     4081 gcggctttga atggtagcta aaactgttgc ttgaagcggt gcttcgagca agaaatagac
     4141 gttttcacgt ggctcttcca aggttttgag cagggcatta ctgcttgcct cggttaaacg
     4201 atcaactcct cgaatataaa cgaccgtatt tcccccttgt tgggcgaaat tctggagttt
     4261 ataaatcaac tcacgcactt ggtcgatacc aatatctttg tcttcaatcg gctcaagaat
     4321 gtggaaatcg gggtggttgt tgctttgcat aagcaggcaa cttttgcatt caagacaagg
     4381 ttgatggcgg agtttttggc tgcaaagcaa ccattcagcc accttgtaga ttaaggtgtc
     4441 tgtaccaaga ccaacatctg ttttgaacag taaggcgtga tgacctcgac cctgtaaaaa
     4501 tgaatcggta agttgttgat aagtgctttc gagccaaggg tacattattt cagccagttt
     4561 ctaattactt gttgaatatc cgcagtcacc tgttcgatgg gttgttcggc attgatgatc
     4621 acggctttat cgttgtgttg ggttaattct aaataacgct ctcgtgtgcg gtagaagaag
     4681 tcaaggcttt gctgttcgat gcggtctaat tcgcctctgc ctctggctct ttctaaacca
     4741 atcaccggat cgagatcgag ataaatcgtt aaatctggct cgaatgtgcc gagtaccgat
     4801 tcttttaagg tttcgagtaa gtgacgatcc aacttacgtc caccgccttg ataggcttgg
     4861 gaagacatat cgtggcggtc gcccagaacc catttgcctt cggcaagggc aggtttgatc
     4921 acattttcga ctaattgaac acgagcagcg tagagcatta gcagctcagc cttatcgtta
     4981 atggcttctt cggtttcgtg tttaattaaa tggcgtaact tttcggcaag gggggtgccg
     5041 ccgggttctc gggtcattac tacgtcatta atgccggctt gttccaactc tttgagaatc
     5101 acttggtgag cagtcgtttt gcctgcgccc tctaagcctt caattacaat aaattttcca
     5161 cgcatattgt tctcactatt tttgttcatt tttgcgtttg cgttcaattt gaatccattc
     5221 tgccaccgct ttattatgct cattcagtgt tttgctgaat ttatgaccgc ccgtgccgtc
     5281 tgccacaaaa tagaggtagg gtgtattatc cgggttggca accgctttaa tcgaagcttc
     5341 actcggcatg gcaatcggcg ttggcggtaa gccgtcaatc tggtaagtat tgtatggcgt
     5401 tgcctcttct aaatctttgc ggcggatatt gccgttataa cgatcgccca ttccgtaaat
     5461 gacggttgga tcggtttgca gtcgcatatt gttgcgtaaa cggttaataa agaccgatgc
     5521 cacttgtggg cgttcggtcg caatgccggt ctctttttcc acaatcgagg caagaatcag
     5581 catttcgtat ggtgttgcaa gcggtagatt ttccgctcta tttttccaag cctgttccaa
     5641 cgccgttttc tgcttttgat aagcccgttt aagcaaggct aaatcggtgg aattgggcgt
     5701 gtagttgtaa gtatccgggg ctatccaacc ttcgattttt tcgtgtggaa tgccgagtaa
     5761 gtcagcgatt tctttttccg atttgccttg tagcgtgtgc tgtaaataat cggctttcgc
     5821 tagttgttcc cgccaaattt taaaagtttt gccctcaata aattgcacgt taagttgcac
     5881 ttctttgccg gagcttaaat gagcgagcaa atcttttact gtcgttaagc ctgcgagtga
     5941 ataagcacca gccttgaatt tgcttaactc agggtataat cgcattaaat aagggataag
     6001 atcggcgtca tcgtgggtga caatgccttg ctcttctaac agagccgcta atttttggct
     6061 ggaaacgcct ttttccaata cgaaaagttg attcggctga accgtgatcg ggtgttcggc
     6121 taaagaggtg agtttttggt agccgtaaaa cagtccaccg caagcaataa cgccggctaa
     6181 gcctaatgca ataaggattt tttttagcat tgatgaataa aataaaagtg ataaaaattg
     6241 actgaattct actataaagc ggttgttttt tcagaaaaat ttgcaaatgg gatttgagta
     6301 aatggtgggt catgaaggat tcgaaccttc gaccaacgga ttaaaagtcc gctgctctac
     6361 cgactgagct aatgaccctc agaggagttt tgaaattaat ggtgggtcat gaaggattcg
     6421 aaccttcgac caacggatta aaagtccgct gctctaccga ctgagctaat gacccttaga
     6481 ggtgttttga agattaatgg tgggtcatga aggattcgaa ccttcgacca acggattaaa
     6541 agtccgctgc tctaccggct gagctaatga cccataatct tgcgtaacga gggcatatct
     6601 tacggatttt taaaactttg gcaagttttt tttatcgaaa aatggttgag tgtgcggttt
     6661 gtaagcaatt tagcaaaaaa ttagccggat ttgttggcgg aaaatgaaaa gagaaacggg
     6721 cttttatctt tttctgaaaa taggctataa tcacgccgtt tatttcacct attatagaag
     6781 gaaaccaaaa tgggcttaga attagttcct gccggtaaag aattaccgga cgatatttat
     6841 gttgtaattg aaattccggc aaactctgat ccaatcaaat atgaagtgga caaagaaacc
     6901 ggggcattat ttgtggatcg ctttatggca accgcaatgt tctatccggc aaactatggt
     6961 tatgtgaata acaccttatc atcagacggt gacccggttg atgtattagt gccaacacca
     7021 tatccgttac aaccgggttc ggtgattcgt tgccgtcctg tcggtgtgtt aaaaatgacc
     7081 gatgaagccg gcggtgatgc aaaagtggtt gctgttccac acaccaaatt aagtaaagag
     7141 tatgaccaca tcaaagatgt aggtgactta ccggcgttat taaaagcaca aatccagcac
     7201 ttcttcgaaa gctataaagc attagaagcg ggcaaatggg tgaaagtaga aggttggggc
     7261 gatgtaaacg aagctcgcca agaaatctta gaatcattcg agcgtgctaa gaaataatta
     7321 tttatttttg aatgccaagc aaatttgttt ggcatttttt gtgggatata aaatgaaatt
     7381 catcaaaaaa ttaagttatt cagttttttt agcaacagtg attaccgctt gtgccacaac
     7441 agaaagcatt aaccaagaag cggctcaaag ttatgctcaa gtgaaaaccc aagctcgtca
     7501 gcaaaatgcg attgacaatt cgtctgccac cgctaagcgg attcacactg tttttcataa
     7561 aatgaagcct tatgcggaaa gagccaacca gactggtgta ccttttcatt gggaaattac
     7621 cgtattgaaa tcggatgaac tcaatgcgtg ggcgatgccg ggcggtaaaa tggcgtttta
     7681 cacggggtta gtggaaagac ttaatttatc gaacgatgaa attgcagtgg taatgggaca
     7741 cgagatggct cacgcactga aagaacacgg taaatcagac cgtacggtta gcgctattac
     7801 cagtattgta ggtgctattg cagatgtggc tgtgactgcc tcaacaggcg taagcaccga
     7861 aggtttactc agcactggcg tggatttgat tgccaccaag ccattctctc gcagccaaga
     7921 gactgaggcg gacgaagttg ggttaatttt aatggcagaa tcaggctaca acccatcagc
     7981 agcgccgaat gtttgggtaa aaatgagtaa agccaatggc gattcaggct tgtccatttt
     8041 ctcaactcac ccatcaaatg ctgaccgtca agaaaactta gcccgccttg tgccggaagc
     8101 aatgaagatt tataacgccc gtaaataatt gacaatcggt tcttttttgc aaaaatgctc
     8161 ttgaatcctc aagagcattt ttcattaagt gttagtaacg cacaaaaccg actaattcat
     8221 ataccttatc taacgttgct ttggcttgag ctcgagcttt ttctgcccct tcacggtaga
     8281 ttttttccaa taatgcttca tcttggcggt agtggtgata acgttcttgc agattggtta
     8341 atagttcgga aaccttatct gctacttctg ttttcaaatg accatacatt ttgccttcaa
     8401 attcggtttc taattcggca atggttttgc cggtaatggc ggagagaata tccaataaat
     8461 tcgagacacc ggctttattc tgtacgtcat aacgcactac tggcggttca tcgccatcgg
     8521 tcattgcccg tttgattttc ttcgctaccg ctttcggatc ttccaatagt ccaatcacat
     8581 tgttacgatt atcgtccgat tttgacattt ttttggtcgg ctcaagtagc gacatcactc
     8641 ttgccccgga tttcgcaata aagacttccg gcactgcaaa aacaggctcg atcaggttgc
     8701 cttcggaatc ttttttgccg tataaggcat tgaaacggtt ggcaatgtca cgggtgattt
     8761 ccaaatgttg tttttggtca tcgcctaccg gcacttggtt ggcttggtaa agcagaatat
     8821 ctgccgccat taataccgga taagtaaata agcccacatt gacattctct tcatagcgtg
     8881 ctgatttatc tttaaattgc gtcatacgcc ccatttcacc gaaataggtg taacagttca
     8941 gcacccaagc taattgggcg tgttccggca cgtgggattg aataaaaata gtgcttttgt
     9001 ttggatcaat gccacaagct aaatacaggg ctaacacatc taaagttgat ttgcgtagcg
     9061 actccggatc ttgacgaacg gtaatggcgt gttgatcgac aatgcaatat acacagtcat
     9121 aatcatcttg cattttcacc cagttgcgta acgcccctaa gtagttaccg atagtcaatt
     9181 cacctgaggg ctgcacgcca ctaaatacaa taggtttgct cattttatct tctcgtttga
     9241 tttgaaaaat ataggttatc ttaacggtta ttgggaaggg ataaaagtac aagcggtcag
     9301 atttattgat gattttgcaa aaaatagagc aaatcagacc gcttgtatct tactcaaaaa
     9361 tcactgaaac ccttgccata atttcatcaa gtaggctttc gggtaaggct tcgataaatt
     9421 ttccatggcg ttgtgcaata tcgactgtgc gaggttgatc gcatcgaata atccctgttg
     9481 tttttaagcc ggcatctttt aatgaaacgg caaagcccag tctttcagca aaagctccac
     9541 cgttagtaat cggcacaacc acaggcagtt tactggctag attaaatgca gttgcggaaa
     9601 caattacaac ggggcggaag cctgattgtt cgtgtcctaa ggttggatca agatcgagcc
     9661 agtaaatatc gccacgtttc ataaaatttc ttttcctatt gccggctcgg ataaccacga
     9721 ttggctttct tcattccttg ctgcctcaaa atcggattgt cttaataatt cctctaagct
     9781 gtatttcact tttgggcggg caggattaat cacgagttgg ttgtcgttta aagacaaatc
     9841 cactttgcta ccgacggaga gcttgagtgc ctctaaaaaa gcaggcggaa tcaccattgc
     9901 aaccgagcca ccgacctgac gtaatgcgat tgttggcata ctttactcct ttaaatcttt
     9961 aggttcggaa agtctaaagc aaacatcaaa agaaaacaaa tgttttcttt ataaccccac
    10021 aattttcaac acatctttaa attcagatgt cacaaaagtc gggttagatt gttcaatcgg
    10081 cacattgtag ttatagccgt aagttagtcc aaccacatca caaccggcgg ctttggcggc
    10141 aatcacgtca ttttctgagt cgccgacaaa aagtaattct gatggggtaa tgccgaattt
    10201 ttcgcagata aaaaacatcg ggtcagggtg cggtttgatt ttggggagcg attgcccacc
    10261 aagggtttca tcgaataaat gataaatgcc gaaagcggaa agcaccggct cgactaattt
    10321 ggtcggtttg ttggtaatca ccaccagcgg gtagtcgttt gctttgagga tttctaaggt
    10381 ttctttcaca tttgggaaaa gggtgctttc ctcgcacaca taggtggcgt agtatttatc
    10441 aaagctcact cgcattttca ccaactcatc ggcttggaaa attctgccgg tgtgagcaac
    10501 cgcattttgg aagaaaatat ctgccccttt accgatccaa gtcagcactt tttcttgtgt
    10561 aaccgttggc aaaccggctt ctagaaacat tgaattggcg acaagagtga gatcggggag
    10621 ggtgttgatt agcgttccgt ctaagtcgaa accgatgact ttgtattttt tactcatagt
    10681 atatccttca aacacaagcg gtcgttttct gcaaattttt tgcaattttt gtaatgaggg
    10741 caaatattga cttgccccta cgtttatttc actttgttta ctttatacgc ccacgccata
    10801 atcagtatgc cgccgataat catcggtaaa gagagtagtt gcccacgagt gattaaatct
    10861 gcggtggtat tgacgttatg gtcgatttct cggaagtatt ccacaataaa gcggaatgtg
    10921 ccgtagccga ttaaaaataa ccctgaaacc gcacctgccg ggcgaggctt ttgaataaac
    10981 cagttgagga taaagagtaa caccacaccc tctaaaaagg cttcataaag ctgtgacggg
    11041 tggcggggaa gatagccacc gcttggaaat aacaccgccc aaggcacatc ggttacacgc
    11101 ccccaaagtt catcgttaat gaaattgccg atacgcccca tacctagccc gaacggtact
    11161 agcggtgcga taaaatctgc tgtctgccag aaattgcgtt tttggcggta ggaaacccaa
    11221 atcattgcta caatgacgcc gattaaaccg ccgtgaaagg acattccgcc ttcccaaatg
    11281 cgaaagaggt agagcggatc ttgtaagaaa cggtcgaagc tataaaagaa cacatcgccg
    11341 atacgcccac ctaatactac gccccagaag caagtataga ctaagctatc cacttgctcg
    11401 gttgtccaaa ctccattgga atttttcgcc cgtctcattc ccagccagta ggcaaaggca
    11461 aagccggcta aatacattag cccataccaa cgcagggcaa tcggaccgat ttcaaacaca
    11521 atcgggctaa tttgtggaaa ttggataaat tgttcgttca tagtgtcctt attttaaaaa
    11581 catattgatg gcgatacaga ccaaaagcac cgcaaaggct tttttcagca tcggcacagg
    11641 tagagcgttg gcggcacttg cccccatttt tgaggtgaaa aatgaagttg ccgtaatacc
    11701 aaacagagcc ggtaaataaa cataaccgag agaataatca ggcattcctt ctaagcccca
    11761 gccacttaca ataaagctga ttgtgccaga taaacctaaa aatgctccgc aaaatgagga
    11821 agtgccgatg gcacgtttca tttctaagcc tcgatcgttt aaaaatggta caataaaggc
    11881 tccacctgcg atccctgcca tactggctaa cgcaccgatg attgaacctc cgattatcgt
    11941 cgtttgaacg gtaagtggtt tatttttcgg tgctcttttt attgaaaaaa tcattttacc
    12001 tgcaaggtaa agtaccatta ccgcaaaaat tctagacatc agttgcggat cgaggcggct
    12061 taccaccaag cccgatagaa aaaccgaaac catcaacgct ggaataaaat atttactggt
    12121 ttggatatcg acattgccta acttatgatg gcgttgtgcc gatgcaaagg cggtaataat
    12181 aatggttgaa aatgatgtgc cgagtgcggt ggacattata tattccggcg gtacacctgc
    12241 catgggcagt aggaagacca aactcggcac gatgattaac ccaccaccaa tgccgaacaa
    12301 gccggctaaa aagccgacaa acacccctaa aaaaaggcag cttaataaaa tagtcatctt
    12361 attttccttt ttgattatgt tgatgccaag gacgataagg cttacgagct tctcgtttat
    12421 aggctttggc agaatcctga gaggtttttt tataagtatg gggcgaagtc tcgccacgct
    12481 caatgcgtgg tttctcaccg gttttatcgt cagtcgcttt ttgaatattg ttttgcaaaa
    12541 cctgtgcaaa ctctttcatc gctttgcgat aaacatctcg tttaaaagag accacttggc
    12601 ggactggata ccaaaagctg acccaacgcc agccgtcaaa ctccggattt ttcgtggttt
    12661 tcaaattaat caggctttca tcaccgatta attgcagtag aaaccaacgc tgtttttgcc
    12721 cgatacagac aggaccagag ccttcattac gtaccaagcg ttttggcagt ttatatttta
    12781 gccaatattt agacgcccaa agcaatcgta catctttttt acttaagccg acctcttcat
    12841 aaagctcacg gtacattgct gcttcaatgt tttccccctc attaattcca ccttgcggaa
    12901 attgccaaga gttttgacca aaccgttttg cccacagaac ttgcccgtgc ttattacaga
    12961 taacgattcc aacatttggg cggtagccat cgaaatcgat cactcgacca cctaattgat
    13021 aaaaattcta gaatgggaga attgtttcat actttgggtt gatttgcaaa aaaaccataa
    13081 aatataaccg cttgtgaata actttgtgga taactattga atataagtgg tataagttga
    13141 ggataaacag gcggaacgtt gtaaaacaga gcaattaatc agatctaaaa atgcgatctt
    13201 tttcttaagc aatgatctgg ataaagatca agttgttgcg ttttttctcg tcaaaataag
    13261 tttaaatttt aaaatgaata agcagggcaa tttttgcttc gcaaataaag cagagttatc
    13321 cccaccattt gtggataaag atgtgatagt ttttcaaatt aggcgtgaat aactcaaatc
    13381 agccttttgc tatttccata aattataatt aaatcaaata gttagtgtca tcttttcaat
    13441 ctgtgaataa tcaattgttt tgttggttgc tttttgtgca attgtatttt tatgctaatt
    13501 ggtttgtaac aaaaatgtga tctatttctc atattttgca aatagtagta attcttattt
    13561 ttattttaaa gtagaatagc cgcacttttt tcttaatgat ttatgaggtt ttaaatgatc
    13621 atttcatctg caaacgatta ccgccgtgcg gcaaaacgtc gtgttccccc ttttatgttc
    13681 cattatgcgg atggcggttc ttacgccgag cagaccttac gtcgtaatgt gagcgatttg
    13741 gaagacatcg ccctgcgtca acgtgtgtta aaagatatgt cgcaactaga caccggcatc
    13801 gagctgttcg gcgaaaaact gtctatgccg gtgaccctcg cccctgtcgg tgcattagga
    13861 atgtatgccc gccgtggcga agtgcaagcg gccaaagccg cagataacaa aggtattccg
    13921 tttacccttt ccactgtctc tatttgcccg attgaagagg ttgcaccggc aatcaaacgc
    13981 ccgatgtggt ttcagctcta tgtgttaaaa gatcggggct ttatgaaaaa tgcattggaa
    14041 cgagccaaag ccgccggttg ttccacgcta gtgtttaccg tagatatgcc gacccccggc
    14101 gcacgttatc gtgatatgca ctccggaatg agcggcccat acaaagacat tcgccgtgtg
    14161 ttgcaggcaa tggttcaccc gttttgggcg tgggacgtgg gcattcacgg taaaccccac
    14221 acgttaggca atgtgtcaaa ctatatgggt aaaccgattg atctgaacaa ctacatcggc
    14281 tggctgaccg ataatttcga cccatcaatt tcgtggaaag atttagagtg gattcgtgaa
    14341 ttttgggacg gcccgatggt gatcaaaggc attctcgacc cagaagatgc taaagatgcc
    14401 gtaagatttg gtgcggacgg tatcatcgtc tccaaccacg gtggtcgtca gttagatggg
    14461 gtactttctt ctgccaaagc cctgccaagc attgccgatg cagtaaaagg ggagatcaaa
    14521 atccttgccg actctggtat ccgcaacggc ttagatgtgg tgagaatgct ggctctcggc
    14581 gcagattgta cgatgatcgg gcgttccttt gtttacgctc ttagcgccgc cggtcaagcc
    14641 ggtgtggaaa acctgctcga catcttcctt aaagaaatga aagtggcgat gacacttacc
    14701 agcaatgcta aaattagcga catcggcaga gatgctttgg tagatttaag taatctttag
    14761 ctcaaatagc cacaatccgc acgttttagg tgcggattgt tattttagat aggctaattt
    14821 ggcattttgg taatattaat gcggtaatat ttcaatgtat cttggttgaa aaagagaaat
    14881 tcatcgttat ctttagtttt ttcgcccagc acataaatgt tattgcgatg aatagataag
    14941 acataatatc gcttattttc aatttcaaga taatcatacg ttgttctcag ctcagggcga
    15001 atgtagccaa tactcaaaga aagtaagcta aaatagatga aaataaaaat atagaaaaaa
    15061 ccgaagcgtt cttcgcttaa cattttttga atatctaagt ggaatacgcg gtggccccaa
    15121 tgtttgtgaa ataataatac tgatagggta gttgtcccta gatagaggta gttgtcccta
    15181 gatagagtag gtgtaaatac attggcactt tgccaataaa cagatagaaa ctgatcatta
    15241 ctggcaagct aaaaatagta acaagaacac tcacccgtag ccagccaagg tatttaaagt
    15301 aatgcagctt aaaaacttta ttaactaaag cgtatcctat caaataaaaa agaaagatag
    15361 ttaaaaatgt gccaaaaacg taggctagtg cgcgagctat accggcatta ccaacctcaa
    15421 catgccacca cgggtagcca tgaaaagcag caatacccca agcataacag taagcggtag
    15481 aaaaagagat taaagtaaag aaagcgagag taagagaaga gttgatgaat ttctgattag
    15541 tcataacagt aaatagattg cacctactta gttaaagatg aaacacaaga aagcagactg
    15601 agtttagctt ccacccaact cctttgttta gaggagaact ttattaaagc acgacttttg
    15661 ttgtatttca aacctttgtt tttatacaaa acaaccgtgt tgtaaaaaat gatcgtaaac
    15721 tgaccgcttg taatgcactc tgaatatatc gaaacatgat aaaaatgata aagcatgttt
    15781 cgataattta ctgtctttag tcttttaaat gttttgcatg aaaggctata tgttcaccga
    15841 taaagctact aatgaaatag tagctgtgat cgtaaccatc acgtaaattg aattggtagg
    15901 gtattccaag tctatctgcg gtttcacaga aaatttccgg ctttaactga tcgctcaaaa
    15961 agctgtcttg gctgccttga tcgattagaa ttggcaagct tgggcgatat ttttccagca
    16021 atgccacgct atcatacgcc ttccaagcgg tctgatcttc gcctaaatat gctaaaaatg
    16081 ctttttgccc ccaaggaact tgggttgggg cgacaatcgg tgcaaatgcc gatacacttt
    16141 gatattgccc cggattttta aatgcaatgg ttaaggcacc atgtccgccc attgaatgcc
    16201 caaaaattga ttgtttaccg ttagtcggga aatgagcatt aatcaatgtt ggcagttcgc
    16261 tgacaatgta atcatacatt tggtaatgtg ttgtccattc gccttgcgta gcatttaggt
    16321 aaaatccggc accctgacct aaatcataag cctcatcatt agcgacattc acacccctag
    16381 ggctggtatc cggtgcgacc acaatcagat gatgttcgtc ggcataacgt tgaaagccag
    16441 atttagtgat gaagttctgc tcggtacagg ttaaaccaga aagccaatat agtacgggta
    16501 gcttttgtgt tttagcagat tgcggcagat aaatagcaaa tttcatttca cagtttaagc
    16561 tggctgagaa atgttgccaa acctgttgtt caccgctaaa acagcggtag ttttcaaatt
    16621 gttgcataat attccttaca agcggtttaa ttccgctgat tttttgcaaa aataaaggcg
    16681 gaactcaccg cctttatatt gtaatatcaa cctttcaaac ttcccatatc aatcacaaac
    16741 cgatatttca cgtctgattt cagcattcgt tcataagcat cattgatgtt ttgcatatca
    16801 atcatttcca catccggcac aatgttgtgt tcggcgcaga agtcgagcat ttcttgagtt
    16861 tcctgaatgc cgccgatgac agaggcggaa atagagcggc ggcctaaaat catcggtacg
    16921 gtgttgatgg tttgctccaa ctcaccgacc aagcccacca gcaccaatgt gccgtccaac
    16981 gctaaggttg ggatataagg tttcaagtcg tgggtataag gcacggtatc gatgattaaa
    17041 tcaaaggtat ttgcaacgtc tgccatttgc ttttcatcgg tagaaagcac cacacggctt
    17101 gcgcccaaac ggtaagcatc atcggcttta cccagtgagc gagtaaaaag cgtaacttcc
    17161 gctcccattg ctttggcaag tttaaccgcc atatgcccca gtccgccaag ccccacaaca
    17221 gcgacttttg agccagcttt gacattccaa tgacgcaggg gcgaataggt ggtaatgcct
    17281 gcacacaaaa gaggggcaac cgctttggtg tccaagtttt cagagacttt taatacaaaa
    17341 tcttcactca ccaccacgca tgtgctgtaa ccgccttgtg ttggtgtgcc gtcaaagcgg
    17401 tcaataccgc cataagtgcc gatgttgccc acttcgcagt actgctccaa accgtgctgg
    17461 caaggactgc attcacggca ggaatccacc atacaaccga caccgaccaa atcgccgatt
    17521 tggaattttt tggcgttttt accgactttg ataatacgac cgatgatttc gtgccctggt
    17581 acaagcggat agctttgcgt ccagccccaa tcattgcgag ccatatgcaa gtctgaatgg
    17641 cacacgccac agtacaaaat atcaatcaaa acatcgtctt caagcaattc acggcgttca
    17701 aaactgtgtg gggcaagtgg tgtggttgcc gaaaaagtgg cgtaggattt gatagggtaa
    17761 gccatttttg gggtttaaat ggctgaaatg gcaattacta tagtgccgat gatttattat
    17821 tgaaaatcaa gatttttgat aaatcggtat cagttaaaat gataattggg ggttttcaga
    17881 ctgactgaaa aattattttg cccattttaa aaacaaaaac accgccctca tcacaaaagc
    17941 ggtgtttttc atcaaaattg tgtcaaagca tactctgcca attctgtaag cacttcatca
    18001 gcaggacgct gagtgggttt taaattgagt gccaaatgtt tcacgccttt ttcttgttct
    18061 tttgcccaaa agtctgccaa gccttttgca ccaccacgca gataaatgtt gttaaataac
    18121 tgtgctttgg cgtttttgtc gtccaaaact tccacaaatt gagcatagcc aaatgctgtg
    18181 ggggtgtctt tttggcgtaa atcggcaagg gtgttgatga tgtttgcggt gtcggcagga
    18241 ttcacaccgt gccaaatcca cgcatcaggt acattagcaa gccagtccat ttcttgcctt
    18301 gctcgtccaa tcgccacaat gggcaagcgg tgtttgggtt tggggagcaa atccaaattg
    18361 tctgttaaat cggcataatg tttgcctttg aaatggggaa aatcctgctc ggttaaggtg
    18421 ttaatcaaat caatgctttc acgaaaacgc tcgctacgag aggcaaaatc cgccccaaat
    18481 gcagggtatt ccacaggtct atcgccagag gataagccca ataaaaaccg tccatgactc
    18541 aaactatcca cacttgtcgc cattttggca atgtgaatgg gactacgcaa aggggcaatc
    18601 agccctgccg tgccaagggc gatgttttgg gtgtgggcgg acaaaaaacc aagtgtaacc
    18661 atcgggtcaa gcccttgccc cacatcgcca aaatgagggt cataaaacgg cacatctcgt
    18721 acccacaatg ctgaaaagcc caagttttca gccagccgtg cattgtcggc aatggtggtc
    18781 aaattgtctg gaatgtgatt ttgatagccc ataaaggggg caattaagcc cagtgttaat
    18841 tgattttgcc caaaaacttg ggagaaaatg ggggaaagcg tgttcatttt ggcgtacctg
    18901 tcttatttaa gataaggtat tttaagggct tttgagtttg cttaaaatgg gataaattga
    18961 gaaagtgttt tgctaaattg gcataaatag acgctttcaa gctgactgaa aatttgcaaa
    19021 atttttaata aaaatgaccg cttgcctttc aacaagcggt cattcccctt taatttttta
    19081 ccaccgtaaa caccttattt ttcagccgat attcactttt ttcatcgtga gccagttgca
    19141 caatggttgg cttgcgttta cacaattcac gcattgcaca cgccgtcaat gttgccagca
    19201 agcatatctt gttcagagta agaggcatcg ccgccaatca aaatataatg ctcgcccata
    19261 tccaccacca ccgccaaatg ccccagcgta tgtcctgcgg ttggcacaag gcggattttg
    19321 ccgtctttgg tgagtttatg actgctctca aaactttcaa acgccccatc attaaaatag
    19381 atgccatcag gcttaaacca atcaggatag tgcattgtta aataaccgtt catcaccgca
    19441 ttgggggcgt tgattgcctg tttttcagtc tcactcatca caaatcagct gtttgggaaa
    19501 ttgggcaatc cgcctgcgtg gtcgccgtgc atatgggtca ttaccaccgt gtcaatgcgt
    19561 aaagggtcaa agccgtttgc ctttaaaatt tcgcccactt cttcgtgttt tttgacccca
    19621 cgccgttcgc aaaactgcat aaacgggtgc caccacggct gatagccctt gtcgttggca
    19681 cgactgcttt cgcccgtatc caccaaaatc aaaccgtcat cgtgttcaat cagccagcaa
    19741 ccaatcggca gtttaggcga ccatttttta tcggtcagca catcaagcac acgggcagga
    19801 cgggcaaaaa agcgtgccac ttgatgatga attttgattt gtacccaacc tgttgtcaga
    19861 caatgcactt taatcatttt tgtgttctca ttaaaaaatc gtgggcatat tgtagaaagt
    19921 gcggtaactt ttcacaaaca ttaaaaagtt cgtatttggc tggatatgca gataaaatta
    19981 caaaaatgta tgcttatttt gaaaaaagat gaacgattta agagtaatca aaacccatct
    20041 agcaatccaa aacgctttga ttgaattatt agatgaaaag ctgtttgaaa aagtgcaagt
    20101 ccaagaaatc attgaaaaag ccttgattaa ccgcaccact ttttaccgtt attattcggg
    20161 cgaaagtgat ttggtcggca aattgataaa agaggtgaag gcggaatatc aagacctgct
    20221 caaaaagcgt tttgaaagcg gtaatttgct gcgatttatg caaaccattg gcaaccgctt
    20281 attggaaaaa agacggctga ttttggcact ttggcaaatc aaaacccctc gccatcattt
    20341 gtatgacgat atgcacatgc tgttaaaaaa cgcctttatc gcccacgcca aacggataac
    20401 atcagatgat aaaaactggg ctgagaaaaa ttgggattac caagcccata tttttgccac
    20461 cattgccctt gaaagccata aatattattt tgaacaaggc aaacttttgc ccattccaca
    20521 ggtgtttgag gagtggatag aaatggtgca ggtgttgaaa agtgtttaga aataactggt
    20581 aaaattttcc ataaaaaaca ccgctttcat cacaaaagcg gtgctttcaa atcatcaaac
    20641 cttaaccaca atcttaccaa tctgctgatt gcttgccata tattcgtgag ctttaaccat
    20701 ttcatcaaag gcaaagattt tgtcaatttc agggcgtaac tgaccgcttg ccaaaccgtc
    20761 atagacaaag gttttggctt gtgccaattt ttcaggtacg gtggtaattt caaagagttc
    20821 atacccccgc acggtcaaat gcttacccaa aatcgggaac actggcacag caatatcatc
    20881 atggcttaac gctccataaa tgatgtaacg accatcttgt gccattgcat tgatgatttt
    20941 tgccgcctct tttctgccca cagggtcaaa taccacattg acgcctttgc cattggtgat
    21001 ttcaaaaagt ttggcggtta catcgtcttc gcttgtggca atcacaaaat ccgctccttt
    21061 ttccaaaagt acatcgcctt tggcgtgggt gcgagacaag gcaatcacgg ttgccccttg
    21121 cattttggcg atttggatac tggctaaacc aaccgaactg gttgcaccgc ccagcaccac
    21181 aaaatcgcct ttttgtactt tgccaaactc aatcagtccg ccataagcgg taacaaacgc
    21241 catccaactg gcggacgctt gttccattga caaattatca gggtgcttga ccacagcgtg
    21301 ttttggcata ttgacgattt cgccataagt gccgtattcg gtaaacataa aggacggaat
    21361 aatgctcacc ttatcgctaa tggcaacttc gttcacaccc tcgccaatcg ccacaatcac
    21421 accagcccct tcataaccca aagtcgcagg gaatacaggg tcaatcacat acgccccttc
    21481 acggtacatc atttcggcac ggtttaagcc aatggcttgg atttggattt gtacttcgtg
    21541 tgcttttggt gcaggaattg ctacatcaac gatttgcaag acatcaggcg aacctgtttt
    21601 tgtaaattgg atttgtttgc tcattgtttt gaccttttgt gtaaataatg ggcgtatttt
    21661 aatgcaatga atttatttta aacacaacat caattgcaaa acacttttgc taaatttaca
    21721 taaatacatt ttcacaatgt ctgaaaagtt gttttgcaaa ttttaaaaag aaaaccaccg
    21781 cttgccgatc acaagcggtg gtttttgtgg gttattttgc aagaggtgtc agcttggcta
    21841 cagtaagcgg ataaatgcga cgccggctaa gagtaaggta acgccgatga tctgcagcgg
    21901 tagaatgggt ttttgtgtaa tgccgaacag accgaattta tctaccagca ggctgccgca
    21961 aatcaggcca gagaggacga gcatcaccac cgagcctgtg ccgatttggg ggacgagcca
    22021 aacgccagcg aggataaaca ggctgcccag tatgccgccg ctccatatcc aaaacggttt
    22081 gccttcggtt ggctggcaga gtttcggcag gcttttttca taaaacagca ctaccagtaa
    22141 taagccgatg gcaccgacac cgaaggagac tgttgctgcg ccgagtgatg agccgggctg
    22201 tctgccgaat tcgccattaa cggcggcttg ggttgctaat gcggttccgc ctaatatgcc
    22261 gactgcgcgc cacagccata aatttgcgtt ttctttgcgt tttagaccgg acagatgggg
    22321 cagtaccacg gcaatccata cgccgaataa gactaaacca atgccaaaca ggcggctggc
    22381 cgtgaaggct atgtaaggcg agttaagcca agcgaaagtg tcgatcagca cgcccatcag
    22441 cacttggcct aaaatcggca tgaccgcagt ttgtacgccg ccgagcttgg ggaagatcag
    22501 tacgtttgcc gttagcccca ccatgccgag taatccgccc gtccatgccc ataaggggac
    22561 gttgcctaaa ttgtcgaggc taaatgctgg tgtttgttgc atgatgagcg agagtccgag
    22621 tagaaacagg aggcctacgc tgaaagagac aaacgaggtt aaaaatgccg cacccacgtg
    22681 catacgcaaa cgggcgttga tggctgattg aaatgcaatc agcacgccgg ctaaaatacc
    22741 gataataaat gtcatgacta actgggttgt gctgccgcct caaaatgagt ggtggttgaa
    22801 aagaaatgcc gtctgaatgc ggattcagac ggccttaagg cttggtatcg gcgtttacct
    22861 gatgttgaat agccgttttg cctagccggt ttattcgatg aatttcacca cggtttcgaa
    22921 atctttacgt gctttttggc ggatttcttt atcacggtaa ccgaaggtac acatcaccga
    22981 tacgccccat tcgcttgggt caaataatcc ttccgctgcc aaaatatcgt tgacttcttg
    23041 gtaagcgaaa ccttctatcg gacaagaatc tacgccaatt aaagctgcac cggtcatcat
    23101 attgcccaat gcgatgtagg tttgtttgct tgcccagtca aacaggctgc gttcgctgtc
    23161 taaaatgccg atatctttct cttggaattt tttatacacg gccatggctt tttcgcgcgc
    23221 ttcgccttgt aaacctcgtc tatccataat ttcagaaaaa tattggctgt cgtaacgggc
    23281 atttttcttc gctaaaatca ccacgatatg gcttgaggtt tccatagttg gaatgcccca
    23341 gcagtaaggt ttgatttttt gccgtaattc agggttttgc aacactaaaa actgccaagg
    23401 ctctgagcct accgaacttg gacttaaacg accgagttcc agaatatagt tgaaatcttc
    23461 agccggaatt tttctgctgc cgtcgtaaga acgggtagat gcacggtaat gaaaggcatt
    23521 gattacgtct tctttgttga aaaattgcat ggaacactcc taaaaatgca aaacagtctt
    23581 ttcagacggt ctgaaaagtc tagatgaaat acggataagt ataaaagatt taagttattt
    23641 ttaataattg ataattttga tatttaggta taagttgacg tgatgagaaa aaacagaccc
    23701 tctgaatgtt caggcggtct ttaacgttgg ttgtttacat aaataatccg cgttcatatt
    23761 gcttcggtac aaactgcatt tcactgctgt ctgctgcatt ttggtcatat tgcgcattca
    23821 atacccagta cggatcgcgc aataaggctc ttcccacagc cactaaatcc gcatcgccca
    23881 tacctaagat atgatcgcct accgccggat tatccaacat acctactgca attaccggtt
    23941 tgcccgtagc gagcttcact tgacgggcaa agtctacttg gtaacctgcg taaaattcgg
    24001 ggtgattacc tgcatgcaat acaccatcac caccaccgct gatgtctaag acatctgcgc
    24061 ctgcatcggc aaaacgtttc gctacctgca aaccataatc caagccaaag ccgttttcac
    24121 cgtattcttg tgcagaaatg cggacaatta acggcatttc agacggcatc acttcacgtg
    24181 ctgcctgaat cacttgctcg ccaaacaaca ttttgtcttg gccgtactca tcactgcgct
    24241 gattggattt cggcgaatag aattggtgaa ttagataacc gtgtgcgccg tggatttcaa
    24301 ttgtatcaaa gcctgcctca acggcacgtt tgaccgaatc cttaaaggct tgaaccaatg
    24361 ctttgacttc gtctgtcgtc agctcgcgag gtgtaatcag attttgtccg gcataatcca
    24421 actcaccgta gtgaattgca cttggagcca ctgcatccgg ctcgtcttgg gctttgcgtc
    24481 cggcatgggc gatttgcaca ccgatttttg ccccttgagc atgaacgctg tctaccagtt
    24541 ttttgaatgc ctgttgttgt tcatcgttcc ataagcctaa gcagtttggc gtaattctgc
    24601 cgtttggcgc cacattggtc atctccacaa taatcaagcc gacaccacct actgcacggc
    24661 tggtgtaatg cacgaaatgc caatcgttcg gtacgccgtt ggttgccgaa tattgacaca
    24721 ttggtggcat aaccacacgg tttttcaatg ctaagttttt aatgttaaac ggggtgaata
    24781 attttctgaa cttcgccatg ttgccttcct taatgaaata gattaggtgg aatgataatt
    24841 cagtgctatt atctattcaa attgattatt gtgatagtta ggtataaaaa tgagtgatat
    24901 aagaacactg gatttcaatt tgctcaaagc ttttgtggtg ctgctggacg aatgcaacgt
    24961 tagccgggca gcacaacgat tatccatcac ccaaccggca atgagcggta ttttaaaccg
    25021 cttgcgcgag agttttaacg atccgttatt tgtgcgagtg caacacggta tgcagccaac
    25081 cgaccgcgcg ttgcaactgg ggcaaaccgc acgcaacatt ctgcaagata tcagctccat
    25141 gctgcaacca cccatattgg aaccggaaca tctgaatatg accttgcgta ttgccgcaat
    25201 ggattatgta caacaaatta ttgccttgcc gctgattctg cgtttaagac ggcttgctcc
    25261 gaatgtaaaa gtcgccttac tgccggtgca ggggcaaaat atcaaaactt tgttcgagca
    25321 aaaaaaaatc gatcttgcct tggtcagccg ccaacattta agcacggata cgctgaaaac
    25381 ggtattatat gaagaacgct acgtatgcgc gatgagcaaa acacacccga tggcgcaaac
    25441 accgctatcg ctcgatcaat tctgcaatct tcccttcgca atgctttctt acaacggcgg
    25501 agaattcagc ggagctacgg atctagcgtt acaaaagata ggactacagc gcaaagtaat
    25561 ggtctcggta aaccatattt ccctgctgcc ccagctgcta caaggttccg acttagtcgc
    25621 agtattgccc gaacgcttag caaaaacctt acccaatgtt tatttacaac ctccgcctat
    25681 agaggtagaa ggcttcacca tgatgatggc ttggcacgaa agaaccgaac aagatacggc
    25741 gcatcgatgg ttaagagagg tgctgcaggg tgtggtaaaa cctaaacagg ctctttaatt
    25801 attctttctt ttgctatgaa aaaagccgtt tatattttta gataaacggc ttttttgcat
    25861 tctaatatta gtatttttct acaaactgag cataggcatt aatgaagttt tgcattgagc
    25921 tttttaatgt ctcagaggca atttcaccct gttcatcaaa tacgcctgta aataagtttc
    25981 ctacgtttaa tgcgaaaggt aaggttggca tatttacaaa tgagcctgaa gtaatagtac
    26041 gtacttgatc agctgcacgt acaccgcctg ccgggcttgc gccaacggtt acgatacctg
    26101 ccggtttgcc aatccatttg ctttgcccca ttgggcgaga aaccacgtca atcgcatttt
    26161 taagcattgc agaaaagctt gcattatgct caggtgtgac taataacacg ccatctgcca
    26221 cagcaaccgc ttcacgcact ctggtgtatt gtgccgggct gttttcatct aaatcacggt
    26281 cgtaaagtgg taagtctgca atatccacaa tgtttaattg aatgcttgca ggtgccattt
    26341 tttgtaagtg acgaacagtc aagtgactaa atgaagtttt gctgccgcta ccaattaata
    26401 ctgcaatttg ttttgccatt ttataattcc ttagtacata gagaatatag gcattttatc
    26461 cctttcaatc tgtttcataa agcgcttatg atgaaaagca ctatttactt atattaaata
    26521 attttgcaaa ttttaggcca aatttgaccg cttttatctt tagctaaaaa ggttataatt
    26581 tgtagaaata gatcttaatt tagggttttt atgctttttc taaacaaaat aaaacagctt
    26641 ttcatcttcg cctttacgct agtgttatct gcttgcagtt tggttgttta taagccagtt
    26701 gaaacaatta aacaggtaaa tgttgaaaga ggttatcgac aaaaaaatgt gatcgctgaa
    26761 agtgcaaaag acggtaatat tgttgtcatc atgttttcag gtggtggaac aagagcggcg
    26821 gcgcttggtt atggagtgtt ggaagagttt aaaaaggtaa gggtgaaaga aacaaataaa
    26881 ggtaatactt tattagagaa tatagatatt gcctttggcg tatcaggtgg atcgatatta
    26941 gccacttatt ttgcgttgga aggaaaggat atcattccta aatttgctga ccgtttttta
    27001 aaagcgaact ttcaaaaaga tattattaca gaggtgtttt cgttatccaa tcttcctcgt
    27061 ttaagttctc ctcaatatgg gcgtggtgat ttattgcaag aacgcttaaa ttttgccctt
    27121 tatcatggta aaaagtttgg tgatttagtg aaaaatcgta aaggaccttt tgctgtgatt
    27181 agcgcaacag acatgaacat tggtcaaaaa ctgaccttta cgcaagaaac ctttgatggg
    27241 ctttgtttaa atttgaatga tttagaaatt tcccgtgctg ttgctgcttc tagttctgtt
    27301 cctctgattt ttgcgccgct tacactgaat aacaatggtg gaaattgcca ttttagtatg
    27361 ccacaagaat ttagtgctag agaaaaagca attgatggac taattacaaa aaatattgaa
    27421 gaaacgaatc atatactcag cctttatcaa gatagtaaag aacgcccctt tatccattta
    27481 gttgatggtg gattaacaga taatttaggg cttgccagtg tgctggaaat atctgatgtt
    27541 atgggtattg aagagatgta ccagtatatt catcagctta gggtgaaaaa tattgtagtg
    27601 attaatgtaa atgcgcaaaa tgaagtatct agcgagatcg ataagaccgc aaatgtaccg
    27661 ggggtggctg atgtagtgaa tacaatagtt aatgtgccaa ttgatagaac gacacaaatt
    27721 aatttacaac gttatcgcca gtttacagat ggttggaatg aatatgcaaa taaacagcca
    27781 tcaaagatcg aaatgcattt tgtcagttta ggtttaaaag aattacctga tggtgattta
    27841 aaaaaagatg tgctaaatat tgcaacatca ttttatttgc cggaagagga tgtagataaa
    27901 ttacgtgaag ctgctcgggt tttattgcag caatctcaag aatataatgc ggcattaaaa
    27961 acactgcagt agtaaaaaac cgaccaagcg gtcggttttt ggtatttttt tgcaaatatt
    28021 tattcgctga tgtcgtttaa atccaacaac tcttgcgaaa gaataatgcc ggttaagtca
    28081 gcataaacgt aatcttcggg gaagaaggtt acaccgccaa aattcacagg cgtatccact
    28141 tcgccaatgt cggtattatc tgctcccact ggaattggcg ctaaagcatg aataccgata
    28201 tctaatcttt ccaaaatatc taattggcga accgcaccat aaacgatgat accttcccag
    28261 ccgttatcta cagcaagttg agccagctct gcgtcaatta aggcacgacg aaccgcaccg
    28321 ccaccatcga ctaacagcac tcgcccttca ccctcttctt ccaaaacttc agcaattaaa
    28381 ccgttgcttt caaagcattt aaccgtggta atcttcccaa agaaggaaga agcaccgcca
    28441 aagcttgaga aaattggttc aaccacatca acttggtcag aataaagatc gcaaagtgca
    28501 gaggtatcaa tacgcataat atgctcctgt tcgtagatta tttagctaaa gtataaacct
    28561 tcgcccaaaa tttgcaaaat tttatcgaaa aaagaccgct tacaggcttt tttcttatgc
    28621 tttattttct agtgaaccgc ttttaatatg caattccatt tggttgtaag gaatagatat
    28681 acctgcttca ccaaaggcta attttacttg ttcgataatt tcccaatatg ctgcccagta
    28741 atttggtgtc tgaacccaag ggcgaacaac aagttgaaca ctatgcggtg ctaaagcgcc
    28801 gactgctact acaggtgccg gatcttttaa tacataagta ttggcgtcta aaatgcgttg
    28861 gataatctct ttcgcctctt ttaagttaga ttcataagaa atatcaaagg tgaaatcaat
    28921 acggcgtgtc gggttgttag agtagttgat gatgctgtca gaaaacactt tgccgtttgg
    28981 taataacacg gttttgttat cgccggtgcg aagttccaac actaaaagcc ccatttgttc
    29041 aaccacgccg gtcattccgc cggtttcgat taaatcccct ttgcgaaatg gcttgaagat
    29101 taacaacatc acgccggcag caaagttttg taatgagttt tgtaatgata aaccgatggc
    29161 taaaccggca gcaccgatta atgcgaccag cgagctggtg ttaatgccga tttgtgaaag
    29221 cgaggcaatc accacaatta acagcagtaa aaaatagctg attgagacaa taaaactttg
    29281 cagcatttca tctttggttg attttaatgc ggctttaccg agtaaacggc taattaggcg
    29341 ggcaagaaat ttcccgacta caaaaatcgc aatcgccagt aaaattttgg tgccataagg
    29401 gataatccac tcatttagca tagtttcaat attcatatta ctgactttgt ggattacttt
    29461 ttcggtttcg gcaaccacgt caatgtttgg agctgtttcg gtgacttttt cagtcatatt
    29521 gtttccttaa aattaaaatg aaaaataagc ctagcgaatt tgcctcactc gctaagcggt
    29581 tttgtgctag aatttagagc aaaattttct ctaaaagaca agataatgac aacagaaaaa
    29641 gtaattagtg ccggcgttca attttttacg atcagtgaag atgaagccgg acagcgttta
    29701 gataattttt tattggcaaa gctcaaaggc gtgccgaaaa gtttgattta ccgcattgtg
    29761 cgaaaaggcg aggtgcgggt gaataaagga cgaaacaaac ccgaatataa attacagcct
    29821 gatgatttag tgcgtgtgcc gccggtgcgt gtggcggaaa aaaatgaagc cccaatttcg
    29881 actaaattaa acaaagtggc ggagctggag agccaaattc tgtatgaaga tgagtcaatg
    29941 ctagtaatta acaaaccttc aggcattgca gtacacggtg gcagtggttt aagttttggt
    30001 gtgatcgaag ccttgcgtgc attacgtcca caggctcgtt tcttggaatt ggtacaccgt
    30061 atagaccgtg atacatcagg cattttgctg gtggcgaaaa agcgttcggc gttacgttcc
    30121 ttgcacgaac aactgcgtga aaaagtagta caaaaagact atcttgccct tgtgcgaggg
    30181 caatggcagg ctcataccaa agtgattaaa gctccattgc taaaaaacga acttgccagc
    30241 ggtgagcgaa ttgtacgggt gagtgaagag ggtaaaccgt ccgaaacccg tttcagcatt
    30301 gaagagcgtt atgccaatgc cactttggtg aaagcttcgc ctattaccgg aagaacccac
    30361 caaatccgtg tgcataccca atatgccgga cacccgattg cgttagatga caaatatggt
    30421 gatgcggaat ttgacagcaa aatgaaagaa gtgggcttac agcgtttatt tctgcacgcc
    30481 catgctattc gttttgaaca ccccaaaacc ggcgaagaaa tggtcattac cgccccgctg
    30541 gataaaactt taaaaggcgt attggcaaaa ttaagggcta attactaaat aacttaatga
    30601 gagagtaaga tagcgcaagc gtccacgctt gtgctgtaaa tcaacataga gtggtacaag
    30661 cgtggacgct tgcaccaaca aaatataagc aaaaatatgc aaatccattt caaaaatttt
    30721 caaaaaaatg accgcttgtt agatttaacc acaccgcaaa ttatggggat cttaaacttc
    30781 acgccggatt cattttccga ttcgggcaag tttttttccc tcgataaagc cttgttccaa
    30841 gcggaaaaaa tgttagctga tggggcaagc attattgata ttggcggtga atccacccgc
    30901 cctaatgcgg cgattgtgag cttagaacaa gaattagagc gtgttgtgcc ggtggtggag
    30961 gcgatccgca gccgttttga ttgcttgatt tcggttgata gctccaaagc agaagtattc
    31021 aaagagtcgg caaaagtcgg tatggatatc attaacgata ttcgagcctt aaccgagccg
    31081 aatgcgttgg cagcggcagt agaattgggc ttgccggttt gtttaatgca tatgcaaggc
    31141 aacccgcaaa caatgcaaca aaatccgcac tatgatgatg tgttggaaga tgtggcagat
    31201 ttcttaaatc aacggatttt cgagtgcatc accgcaggca ttcccaaaga acacattatt
    31261 ttagaccccg gttttggctt tggtaaaagc gtgaaacaca attaccaatt attgaaacac
    31321 cttaaagcct ttgtggattc aggcttccct gtgcttgccg gactttcccg taaatcaatg
    31381 attggtgcgg tgttagataa accggtagaa caacggctac ttggctctgt agtaggggcg
    31441 ttattagccg ctcaaaatgg ggcgaaaatt ttacgggtgc acgatgtggc agaaaccgcc
    31501 gatgcgttaa aaatctggca ggcaatgctg gaatcagata atgaggaaaa atgatgacaa
    31561 ccttagttta tggcattaaa aattgcgaca cagtaaaaaa agccttgaaa tggctcgaag
    31621 atcataatca aaacccacaa ctgcacgatt accgtgtgga cggtttaaat gccgattggt
    31681 tagtggaaat ggaagcaaaa ttcggttggg aaaacttagt taataaacgt agcaccactt
    31741 ggcgaaacct tgatgaggaa attaaaaaca accttaaccg tgagtcggca ttaaaagtgc
    31801 taaccgaaca gccgacccta attaaacgcc cgattgtgat taaagaggat attgctttga
    31861 ttggttttaa tgagaaagag tatgtggctg cgtttaatta attttttccc ctgcttgtag
    31921 ggacaggtcc tgtgcctgtc cgtagtcttt aggattgttc gggcgggcac aggacccgcc
    31981 cctacaggat atatagcaaa aaattcaccc aaaacaaccg cttgtaacct atgaaaaatg
    32041 aaattatttc ccttgcacag aacctaatcc gccgtgattc catcagccca caagacaaag
    32101 gctgtcagca agaaattgca caacgtcttg aaaaactggg ctttaatatt gaatggttgc
    32161 cgtttggcga caccttgaat ttatgggcaa cgcacggctc ggaaaatggt aaaacagagc
    32221 cttgcattgt gtttgccggg catacagatg tggtgccggt aggcgatgaa agccaatggg
    32281 cttatccgcc gttttcggct gagattgtag atggaatgct ttatgggcga ggggcggcag
    32341 atatgaaagg ctcgctctcg gcgttagttg tggcggcaga aactttcgtg caacatcacc
    32401 caaaccataa gggcaaagtg gcattattga ttacctccga tgaagaggca gcagccaaag
    32461 acggtacggt aaaagtggtt gaaaccttaa tggctcgcaa tgaagcggta cattatgcgg
    32521 tagtgggcga accgtctagt agcaaggtgt ttggcgatgt gattaaaaac ggcagacgtg
    32581 gttcaattac ggcagatctc tatatcgagg gcattcaagg gcacgttgcc tatccacatt
    32641 tggcggaaaa tccggtgcat acgtcactgg gttttttaac cgagctgacc acttatcagt
    32701 gggataacgg taacgaattt ttcccgccta ccagtttgca aattgccaat atcaaagccg
    32761 gcacaggcag taataatgtg attccgggcg agctttatgt gcagtttaac ttacgttatt
    32821 gcactgaagt gaccgatgaa atcatcaaag ccaaagtagc ggaaatgctc gaaaaacacg
    32881 gtttgaaata ccgaataagt tggaatttat caggcaaacc attccttgcc ggcaatggaa
    32941 aattggtcga agccgcctta caagcggtcg aaaatgtcac aaaaattacg cctcgtttag
    33001 acacaggtgg cggtacttcg gacggtcgtt ttattgcatt aatgggggca gaggtagtgg
    33061 aatttggacc actgaacgcc actattcaca aagtgaatga gtgtgtgagt gcggatgatt
    33121 tggcacattg tggcgaaatt tattatcaaa ttttagaaaa attattggca actgcataac
    33181 cctaaatagg cagaatgtta tcaaattgta ttctgcctat tttttatgta gctattctgt
    33241 taaacagcgt ttacactagc ggcagttttt atatttatag gtaaatgtta tgcaactcta
    33301 ctcttatatc tgcttgctgt ttgggcttgc gatgtttatt tcgtttttta cccgaaaatt
    33361 aaacgaaaat attcaaacca ctattgcaat tacagcctct gcccttgtcg gctcccttct
    33421 tattcttacc ttcggttctc tcggctggtt taatgttgat aaacttgcca tttccatttt
    33481 tgaacaactc gattttaaaa gcttcctgtt aaacggaatg ctggggttct tgctttttgc
    33541 cggttcactt gggattaaac taccattaat gaaagagcaa cggcgggaaa ttgcagttta
    33601 tgccttattt tcaaccttag tttctacttt cttgatcggt gcgttaattt atggcgtggc
    33661 aaggctactt gggttagagc tcggctttgt gtattgtttg ctgtttggct cactgatttc
    33721 gccaaccgac ccgattgccg tattggcaat tatcaaaagc ctgaaagccc caaaacgcct
    33781 ttcgatgcac gtggagggcg aatctctgtt taatgacggt atcggcttgg tgatttttac
    33841 cactatcttt gccgttgctt ttggcggaca agaaccaaac cttagcggta ttaccggact
    33901 gttcttgcaa gaagcggtag gcggtatcgt ttttggctta ttaaccggtt ttgtggcaca
    33961 taaatttatt tccgcaaccg atgacggaag ccttgaaatt ttaattacgc taacgattcc
    34021 aacagtcggc tttgtgattg caaactacct acacgtttca ggggcattaa caatggtagt
    34081 tgccggtatt atgattggca actggactcg ccgttccggt ttctccgaac agagccaaaa
    34141 atatcttgat cacttctggg agatgatcga ccattcatta aactacctgt tattcctgct
    34201 tatcggctta agtacactgt tagttgattt cacctttatt ggtggggtgt taatgttggc
    34261 agcaattcca atttgtttgc ttgcacgcta tatcagcctg tggattccat accaagtgtt
    34321 aaaacgtttc cgtacttata acccgtacac cttaaaaatt atgacttggg gcggtttacg
    34381 tggtggatta gcccttgcga tggcactttc cgtaccggca ggggctgcgg tggtatcgag
    34441 ctcagaaggc aatcttgatg tacgtgattt gattttgtta atgacttatg cggtagtcac
    34501 tttctcgatt ttagtacaag gttcaacggt tgaaccgatg ataaaaaaat ccaagttggt
    34561 agatccaaga aaagtggcac tcaataaatt aggtgcacct gatgatgtaa ttccacatat
    34621 ttaatagcat ttataactga ataacatatc attttgctaa agattattag ccatctagac
    34681 ggctttatat ttaaatacct ctcacgttaa tttgttgaga ggtatttttt atgttattca
    34741 caggattatt atgtggcttt ctactcgggt ttgtgatgca aagagggcgt ttttgtatta
    34801 ccggagcatt tcgtgatctc tatgtaacaa agaatagccg tatgtttgtg gcacttttaa
    34861 ttgcaattac ggtgcaatcg atcgggattt ggcttttgta tgaagccggc tcttttagtt
    34921 ctccggcgga agatttgcct ttgctcgcag tgatcattgg ggcatttctg tttggtatcg
    34981 gcattattta tgcaggcggt tgtgctacag gaacgtggta tcgtgccggt gagggtttaa
    35041 tcggcagttg ggttgcactg gttatttatg ggctgttttc tgcttctatg cgaaccggtg
    35101 tgttagcccc acttaatcaa gagctaaaaa gcaatgtaat tcaacaccgc acgatttatg
    35161 aaacatttgg tatttcccct tgggtgttag tgtttatcct gagtgtaatt acattggcat
    35221 tatccgccca cagcatttaa aaggttaatt ttttaaggag taataaagat gaacgtacgt
    35281 ttacctgcct cagggcttgt ttgcccgttt ccattagtcg aagccaaagc ggcgatggca
    35341 aaattgaata aaggcgatag cttaacgatt gaatttgact gtactcaagc aaccgaagcc
    35401 attccaaatt gggcggaaga ggaaggctat gaagttaccg attaccaaca acttggtgat
    35461 gccttgtggg aaattacggt ggttaagtaa ttagcaataa aaaagctcta cttttttgta
    35521 gagcttttgc tttgagtttt gtatttacta aggattagag taaacccggt tgacctaatg
    35581 ctgggtctgt tgctcttgca gcaatagcat cttcaaccgt catacctaat gcttttgcca
    35641 caccttcacc atatgccgga tcacaggcat agcagttacg aatatgacgg tatttaatga
    35701 agtctaatgc atcgcccata cctgcagcag tattattgaa taatgcttgt ttttgttcat
    35761 cattcatcat attgaacaat acacgtggtt ggctgaagta gtcagcatcg tcttcacgat
    35821 agttccagtg ggctgcatca ccattaattt tcagtggtgg ctctgcatat tgagcttgtt
    35881 cttgccattt gccgaagctg tttggttcgt agtgaatggt actaccgtag ttaccgtcca
    35941 cacgaccttg accgtcacga gcgttgctat gaaccgggca acgtggagcg tttacaggga
    36001 tttggtggtg gttcacacct aaacggtagc gttgagcatc cgcatagttg aataaacgag
    36061 cttgtaacat acggtctgga gacacgctga tgcccggcac taagttactt ggtgcgaatg
    36121 cagattgttc cacatcagca aagaagtttt cagggttacg atttaattca aactcaccca
    36181 cttcaattaa cggatagtct gatttcggcc ataccttagt taaatcgaac gggtggtatg
    36241 gtactttgtc tgcatcagtt tcaggcataa tttgaacaaa cattttccat ttcgggaaat
    36301 cgccacgctc aatcgcttcg tataaatcac gttggtgact ttcacgatcg ttagcgataa
    36361 tagcggctgc ttcttcgtta gttaagtttt taatgccttg ttgtgtatgg aaatggaatt
    36421 tcacccagaa acgctcatta gctgcattga tgaagctata agtatgtgag ccataaccgt
    36481 gcatatgacg atatgaagcc ggaataccac gttcactcat tacaatagtc acttggtgaa
    36541 atgcttctgg taataatgtc cagaaatccc agttgttagt tgcagaacgc atattcgtgc
    36601 gtgggtcacg tttaaccgct ttgtttaaat ccgggaattt acgtgggtca cgtaagaaga
    36661 acacaggggt gttgttaccc accatatccc agttaccttc ttcggtatag aattttaatg
    36721 cgaaaccacg aatatcacgc tcagcatctg ccgcaccacg ttcacctgca acggtggtga
    36781 aacgagcaaa catttcagtt tttttaccga cttggctaaa aattgccgca cgagtgtatt
    36841 tagtgatgtc gttagttaca gtgaaagtac cgaacgcacc ggaaccttta gcgtgcatac
    36901 gacgctcagg aatgacttca cgcacgaagt tcgctaattt ttcatttaac cataaatctt
    36961 gcgctaataa tggaccacgt ggacccgctg ttaagctgtt ttggttatca acaacaggtg
    37021 caccgttgtt cattgtcaaa tgtgtaacag gacatttaga cataatagaa tcctcataa
//
LOCUS       DANLXK010000009        35710 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.009, whole genome shotgun sequence.
ACCESSION   DANLXK010000009 DANLXK010000000
VERSION     DANLXK010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 35710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35710
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            32..2413
                     /gene="bamA"
                     /locus_tag="PXD88_000368"
     CDS             32..2413
                     /gene="bamA"
                     /locus_tag="PXD88_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL6279982.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTKNGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            2493..3284
                     /locus_tag="PXD88_000369"
     CDS             2493..3284
                     /locus_tag="PXD88_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL6279983.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            3284..4309
                     /gene="lpxD"
                     /locus_tag="PXD88_000370"
     CDS             3284..4309
                     /gene="lpxD"
                     /locus_tag="PXD88_000370"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL6279984.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            4338..4796
                     /gene="fabZ"
                     /locus_tag="PXD88_000371"
     CDS             4338..4796
                     /gene="fabZ"
                     /locus_tag="PXD88_000371"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL6279985.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            4830..5624
                     /gene="lpxA"
                     /locus_tag="PXD88_000372"
     CDS             4830..5624
                     /gene="lpxA"
                     /locus_tag="PXD88_000372"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL6279986.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(5662..7662)
                     /gene="mnmC"
                     /locus_tag="PXD88_000373"
     CDS             complement(5662..7662)
                     /gene="mnmC"
                     /locus_tag="PXD88_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL6279987.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(7887..9323)
                     /gene="trpCF"
                     /locus_tag="PXD88_000374"
     CDS             complement(7887..9323)
                     /gene="trpCF"
                     /locus_tag="PXD88_000374"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL6279988.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            9411..9722
                     /locus_tag="PXD88_000375"
     CDS             9411..9722
                     /locus_tag="PXD88_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL6279989.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            9876..10604
                     /gene="truC"
                     /locus_tag="PXD88_000376"
     CDS             9876..10604
                     /gene="truC"
                     /locus_tag="PXD88_000376"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL6279990.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            10622..10786
                     /locus_tag="PXD88_000377"
     CDS             10622..10786
                     /locus_tag="PXD88_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL6279991.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            10779..11255
                     /locus_tag="PXD88_000378"
     CDS             10779..11255
                     /locus_tag="PXD88_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279992.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(11292..12143)
                     /locus_tag="PXD88_000379"
     CDS             complement(11292..12143)
                     /locus_tag="PXD88_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL6279993.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            12204..13613
                     /locus_tag="PXD88_000380"
     CDS             12204..13613
                     /locus_tag="PXD88_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL6279994.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            13659..14009
                     /locus_tag="PXD88_000381"
     CDS             13659..14009
                     /locus_tag="PXD88_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6279995.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            14002..14325
                     /locus_tag="PXD88_000382"
     CDS             14002..14325
                     /locus_tag="PXD88_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6279996.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            14433..14912
                     /gene="smpB"
                     /locus_tag="PXD88_000383"
     CDS             14433..14912
                     /gene="smpB"
                     /locus_tag="PXD88_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL6279997.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            15115..16422
                     /gene="serS"
                     /locus_tag="PXD88_000384"
     CDS             15115..16422
                     /gene="serS"
                     /locus_tag="PXD88_000384"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL6279998.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(16481..16807)
                     /locus_tag="PXD88_000385"
     CDS             complement(16481..16807)
                     /locus_tag="PXD88_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6279999.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(16800..17012)
                     /locus_tag="PXD88_000386"
     CDS             complement(16800..17012)
                     /locus_tag="PXD88_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280000.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            17199..19784
                     /gene="leuS"
                     /locus_tag="PXD88_000387"
     CDS             17199..19784
                     /gene="leuS"
                     /locus_tag="PXD88_000387"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL6280001.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            19984..20472
                     /locus_tag="PXD88_000388"
     CDS             19984..20472
                     /locus_tag="PXD88_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280002.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            20515..21540
                     /gene="holA"
                     /locus_tag="PXD88_000389"
     CDS             20515..21540
                     /gene="holA"
                     /locus_tag="PXD88_000389"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL6280003.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(21541..21726)
                     /gene="yacG"
                     /locus_tag="PXD88_000390"
     CDS             complement(21541..21726)
                     /gene="yacG"
                     /locus_tag="PXD88_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL6280004.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(21708..22343)
                     /gene="coaE"
                     /locus_tag="PXD88_000391"
     CDS             complement(21708..22343)
                     /gene="coaE"
                     /locus_tag="PXD88_000391"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL6280005.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(22379..23035)
                     /locus_tag="PXD88_000392"
     CDS             complement(22379..23035)
                     /locus_tag="PXD88_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL6280006.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(23038..24234)
                     /locus_tag="PXD88_000393"
     CDS             complement(23038..24234)
                     /locus_tag="PXD88_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL6280007.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(24231..24683)
                     /locus_tag="PXD88_000394"
     CDS             complement(24231..24683)
                     /locus_tag="PXD88_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL6280008.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(24704..25183)
                     /gene="ppdD"
                     /locus_tag="PXD88_000395"
     CDS             complement(24704..25183)
                     /gene="ppdD"
                     /locus_tag="PXD88_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL6280009.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            25364..26743
                     /gene="radA"
                     /locus_tag="PXD88_000396"
     CDS             25364..26743
                     /gene="radA"
                     /locus_tag="PXD88_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL6280010.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(26798..27028)
                     /locus_tag="PXD88_000397"
     CDS             complement(26798..27028)
                     /locus_tag="PXD88_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL6280011.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(27148..27642)
                     /gene="folA"
                     /locus_tag="PXD88_000398"
     CDS             complement(27148..27642)
                     /gene="folA"
                     /locus_tag="PXD88_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL6280012.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            27718..27873
                     /locus_tag="PXD88_000399"
     CDS             27718..27873
                     /locus_tag="PXD88_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL6280013.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            27870..28838
                     /gene="proB"
                     /locus_tag="PXD88_000400"
     CDS             27870..28838
                     /gene="proB"
                     /locus_tag="PXD88_000400"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL6280014.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            28838..29602
                     /locus_tag="PXD88_000401"
     CDS             28838..29602
                     /locus_tag="PXD88_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL6280015.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            29605..30237
                     /gene="nth"
                     /locus_tag="PXD88_000402"
     CDS             29605..30237
                     /gene="nth"
                     /locus_tag="PXD88_000402"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL6280016.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            30434..31684
                     /locus_tag="PXD88_000403"
     CDS             30434..31684
                     /locus_tag="PXD88_000403"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL6280017.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(31785..32720)
                     /locus_tag="PXD88_000404"
     CDS             complement(31785..32720)
                     /locus_tag="PXD88_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL6280018.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(32849..33043)
                     /gene="iscX"
                     /locus_tag="PXD88_000405"
     CDS             complement(32849..33043)
                     /gene="iscX"
                     /locus_tag="PXD88_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL6280019.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(33043..33384)
                     /gene="fdx"
                     /locus_tag="PXD88_000406"
     CDS             complement(33043..33384)
                     /gene="fdx"
                     /locus_tag="PXD88_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL6280020.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(33403..33768)
                     /locus_tag="PXD88_000407"
     CDS             complement(33403..33768)
                     /locus_tag="PXD88_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL6280021.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(33778..35631)
                     /gene="hscA"
                     /locus_tag="PXD88_000408"
     CDS             complement(33778..35631)
                     /gene="hscA"
                     /locus_tag="PXD88_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL6280022.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
BASE COUNT        10939 a         7632 c         7046 g        10093 t
ORIGIN      
        1 aattttgcaa aacgatcata ggataatttc aatgaaaaaa ttattacttt cctctctttt
       61 aattgcaaac ggtgtagttg ctgcaccttt cgtagtaaaa gacattcgtg ttgaaggtgt
      121 gcaacctaca acaggcgaat ctatcatttc atctattccg gttagagtag gtcaaacagc
      181 aacggatact gacgtatcta atgtcgtccg ccatctattc agccaacaac gttttgcaga
      241 tgttcgtgca acacgagaag gcaatacgct tgtcatcaaa gtcgctgaaa aaccgattat
      301 tggcaaggta gagatcgaag gtaaccaagc gattcctaaa gatgccttag agcaaaattt
      361 aaaggcaaac ttaattaacc aaggtgaaat ttttgatgct gccaagcttg aagcttttaa
      421 agaaggacta atcgaacatt atcactctac cggccgttat gaagccaaaa ttgacacatc
      481 tgtttcgaat aacaccgaag gtggcgttaa tattaagtta gcgattaatg aaggtgaagt
      541 tgctaaagcc aaaacaatta agtttgaagg taataatgcc ttctctgata aaaaattatt
      601 agaaaactta gatattcaac ctgatgtttc ttggtggaat atttttgaaa gtagcaaatt
      661 cgaacaaacc gcctatcaaa aagacttaga aacattaaga gatttttatt taaatcgtgg
      721 ctatgcaaaa tttgctatcc aagataccga tgttcaattc aatgataata aaacggaagt
      781 tgcattgacc tataaattag atgaagggtc acagtaccat gtcagtgaaa tgcgcattat
      841 cggtaataca gccaatatgg atagccagct caacgcccta ctaaaagaat tcaagcctgg
      901 tcaattattc cgtaaatcag accttacaca aattgaagaa gagattaaat ctattttagg
      961 ggacgcaggt tatggttcag ctaaagtaga tatttatcct caatttaatg aagaaaataa
     1021 aaccgtaaaa atcagttttg ttgtggatgc cggtcgtcgt atttatgttc gtaaaatccg
     1081 ttttgaaggt aatggtgtca ctgcagattc aacattacgt cgtgaaatgc gccaacaaga
     1141 aggtgcttgg ctttccacaa acaaagcttc tctaggtaaa gctcgtttag aaagaaccgg
     1201 tttctatgaa agtgttgata tgtcaatgcc aaatgtagaa ggtacagccg atcaagttga
     1261 tgtagtgtat aaaattaaag aacgcaatac cggtagtatt aactttggta tcgggtacgg
     1321 cacgaaaaac ggtatcagct atcaagcagg aattaaacaa gataatttct taggtatggg
     1381 gtcaactatc agtctaaatg gtacccgtaa taactacggt accagcgtta acctaggcta
     1441 taccgaacct tactttacta aagatggtgt aagtttaggc ggtaatattt tctatgaaga
     1501 ttatgataac tcagacaatg attcaatggc ttcatataaa cgccaaacct atggtattaa
     1561 cggcacatta ggcttcccgg taaatgaaaa taactcatac tacttaggtt taggctatac
     1621 gcacgataaa attaaaaatg cagcacgtga gtacactcgt gagaaatatg taaaatcaat
     1681 gaactttgag ttcgatccag ctgccgatta ttacaaaaaa atcaaagctg atgattttga
     1741 tttttctctc ggttggaact acaacagctt gaatagaggc tatttcccga ctgaaggaac
     1801 taccgcaaac attggcggta aaatcacaat tccaggctct gataataaat attaccgagt
     1861 cagtgcagac tttagaaatt attacccgtt aaaccgtgag cacaaatggg taatttcaac
     1921 gaaagctagc attgcttata ctaatggatt tggtggtaaa gaagttccgt tctatcagct
     1981 ttatactgcc ggaggtattg gtacactaag aggtttctct tacggtgcag tagggcctca
     2041 agcgatttac tataatacaa aatccggcaa atttgatagc atgaataatg atattatcgg
     2101 tggtaatgcg ttagctgcgg caagcttgga attaatcaca ccaacgccat ttgtgagcga
     2161 aaaatatcag cacaatgtaa gaacctctct ctttgttgat gctgcaagtg catggaatac
     2221 aaaatggaag aaagatgaat atacgaactt gcctgactat ggtgatttca aacgtttccg
     2281 tgcttccgcc ggtattgcat tccaatggat gtctccaatc gggccattat cattctctta
     2341 tgcgaaacca attcgtaaat atgataatga tgatattgaa caattccagt tcaacattgg
     2401 tagttcattc taattaacca caagcggtta ataaatgtaa aaaatttgca acttagccgc
     2461 ttatttcaaa actgttcata caaggaaaac aaatgaaaaa attatttaaa atgactggct
     2521 tagccgtagc tttagcctct acaaccggaa tcgcgaatgc tgcagatact attggtttcg
     2581 tagatccaag ctatgtatta caaaaccacc ctgtattatt agatgcttcg gcaaaatttg
     2641 ataaattcat gaaagaaagc caagaaaaat ttgctgctga tgaaaaaaaa ttagcagatg
     2701 aaaataaaac cttaacggct gagcgcaata aaattaatga agatgcgcaa aaattacaaa
     2761 atgaacaaaa aaatgtagaa gcttctatca agaaaaaagt ggcagcatta gagaaagatg
     2821 cgcctcgctt acgttcaaaa gagattcaag cacgtcaaaa tgcgattcaa aaagaagcaa
     2881 acgcattcca agctaaagta acagcaattc aaaaacgtga agctgatttt gcaaaaaaag
     2941 cagaagcctt ccagaaacgt gcagatgaat tccaaaaacg tattgaacaa gcgaataaag
     3001 aaaatggtgg cattaaccca caagaagcgc aaaaacaagc ggttgatgaa gtaaatgcaa
     3061 ccattaaaga gatcgcaaaa tcgaaaggtt acactttagt attacaacca caagtagcac
     3121 tttatgctga agatgaaggt aaagatatta ctgaagcagt acttgatgct attgttaaaa
     3181 aacatccgga aattaaaata gaaaaacctg caactgaagc tcaaccagct acagaaaaag
     3241 aaaccaaagc tgaagaaact aaaccagaag aagcgaaaaa ataatggcaa atttccgttt
     3301 aattgattta gcggagcata tcggcggtac tcttaggggt aacgccgatt tggctattca
     3361 aagtattgct gctttagata aagccgacag ctcgcaaatt acctttatct caaatgcaaa
     3421 atatcgggaa aatttgaccg cttgcaatgc tggagctatt atcgtcagcc cggcagatgt
     3481 agaattttgc cgagcagatc aaaatcttat catcgttgcc aatccgtatg ttgcttatgc
     3541 tcaactggct caatatatgg attctactcc gaaagcagcg agcgaaatcc acccaagtgc
     3601 ggtgatttca cctgaagcta aactgggtaa taacgtatcg gtaggggcaa atgccgtgat
     3661 tgaaagtggc gtagaattgg gcgatgatgc cgtgatcggt gcaggctgtt ttgtgggaaa
     3721 aaacagtaaa atcggggcaa gaacccaact ttgggcaaat gtttcggtgt accacaatgt
     3781 acaaatcgga gctgattgct tgattcaatc ctcaacggtt atcgggagtg atgggtttgg
     3841 ctatgcgaat gacaaagggc aatggattaa aatcccacaa accggtggtg tgattatcgg
     3901 taatcgtgtt gaaattggtg cttgcacttg tattgaccga ggtgcattag atccaaccgt
     3961 aatcgaagat aatgtgatta ttgataacct ttgccaaatc gcccataatg tacacattgg
     4021 ttttggcact gccgttgccg gcggcgtcat tatggcaggc agtctaaaag ttggtcgctt
     4081 ttgccaaatt ggtggagcaa gtgttatcaa cggtcatatg gaaatctgtg atggtgccat
     4141 aattaccgga atgggtatgg ttatgcgccc aattacagaa aaaggaattt actcatcagg
     4201 tattccatta caaaccaata aagaatggcg aaaaaccgca gcacttgtaa tgaatattga
     4261 tgaaatgaac aaacgcttaa aatcgttaga aaaacgtttt aacgattaat tttattagag
     4321 gtcttaaagt gacagaaatg acaactgaaa atcgtgagcc aaatattatt gaagtaaccg
     4381 aaattatgga tatgttaccg catcgctacc ctttcctgtt agttgatcgc gtaaccgatt
     4441 atgaagaagg gaaatggtta aaagccatta aaaatgtaac cttcaatgaa ccttgtttta
     4501 ccgggcattt tcctggcgca ccaatcttcc caggagtatt gattctggaa gcaatggctc
     4561 aagcaactgg cgtattagcc gttgccactt atggtaagtt aagtgaagac gaactctact
     4621 attttgccgc aattgacaat gctcgcttta agcgaccggt tgtgccgggc gatcaacttc
     4681 aacttgaggt tgaatttctt aaagaagtac gtggtattac taaatttacc ggtaaagcat
     4741 acgttgatgg caaattagtc tgtgaagcag atttaatgtg cgctcgccgt aaataattcg
     4801 atataagccc aaactagagg gaacaaacta tgcgtctaat tgattcaaca gcaaaaatta
     4861 gcccgcttgc catcattgaa gaaggtgctg aaattggcgc tcacgttgaa attggtccat
     4921 tttcagtcat cggtaaagat gtcaaaatcg gggctagaac gaaaattcac tcaaatgttg
     4981 tcattaacgg catgactgaa attggtgaag ataaccatat tttccaattt gccagcattg
     5041 gtgaaatcaa ccaagatcta aaataccaag gtgaaccaac caaagtggtg atcggtaatc
     5101 gtaaccgtat tcgtgaaagt gttactattc accgaggtac ggtacaaggc ggtggcgtga
     5161 cgaaaatcgg tgatgataac ttatttatga tcaacaccca catcgcacac gactgctcta
     5221 tcggtaaccg ttgtattatc gccaataatg gtacgctagc aggtcacgtt accctagatg
     5281 atttcgtgat tgtgggagga atgtccgcca ttcaccaatt cgttgtgatt ggttcacacg
     5341 ttatgcttgg aggcggttca atggtcagcc aagacgtacc gccttatgtc atggcacaag
     5401 gtaaccacgc acgcccattt ggtattaact ttgaagggtt aaaacgtcgt ggctttgata
     5461 aaccaactat gcacgctatt cgcaaagtct ataaactgat ttactccagc ggaaaaacat
     5521 tggaagagtg cctagtagaa attgagcaaa ttgcagcaac agaacctgcg attgctattt
     5581 ttaaacaatt cttcaaacgt tctacccgtg gtattattcg ttaataaacg aaaccccgaa
     5641 atcaattcgg ggtttgtttt atcaagcgac cgtcgaacct ttcaacaatt ttcgaatcca
     5701 agctcgattt gggctaaggt tatgccaaat atcctcactg attggcacag gctcattcac
     5761 aatcaggctt gctaacaatt cccctagaag tggtgcagtc gtcaaacctc gagaagacag
     5821 gccgtttacc atatacagat tggtaaaaat ttcagcattt tctaccgctt gtttccgtct
     5881 caactggttg tataaattgg catattggct tttttgctgc tcaaaatgat gcactgcccc
     5941 aaccatcggt acacgatcac gaaacgccgc acgaataccg actttggctt tattttcaga
     6001 taaatcaatt ccttgcgtcc actcacaaac ggttacattt tgctgaagtt ttgcaacatt
     6061 ctcccaatgc tccgataaac taaactcggt ttctgcatta tcccgaatat ggcttgctcc
     6121 aatgcaatgc gtgccatagg ctgacattgg cgttaaataa ccatcataac aaagcacaca
     6181 cttcagtttt tgtaattcgc ttgtagtcgg aatttggctc acttgccctc gtaccggata
     6241 caacggaatg ccgttcgctt ggctaaattc attcaacgta tgtccatttg ccagcacaac
     6301 cgcttgatgt cgaaccgttt ctcccctcgt ctgccattgc cacattccat tagaaaaggt
     6361 taaatgctca actttgtgat tcagtacaat cttcaaccct ttctgctcca gccaagtaaa
     6421 gccatttcta acaagttgta ccggtgaaag ccaaccagct tgcggaataa atgccccgct
     6481 gtttggcacg cttaaaccta atttttcact taattctgcc tgtgaacaag attttaataa
     6541 ggtgtcatca gccgtctgct ccaccatttt ttccagtttt ttagccgttt tctcgtcata
     6601 ggcgtaaagc actaccccgc ttaaattatg ctcaaactca atgttggatt tcagttgttg
     6661 caagcgttgc aatgcataat caaaactatg gatataaaac tgtacatttc gctcgtcatc
     6721 atcgcttaac tgtgggtaaa tcgccccttg taaatttcct gaagcattta ttgccaaggt
     6781 ttcatctttg caatacagcg tgacttgctt gcctttttct aacagcgata acgcaacgaa
     6841 gaaactcgct actccgccac caataattgc aatgtcatca gcggtttcat ttttggcata
     6901 aaaatagggg taattaggct cggaaacttg gctatctaac ggtttctcgc cccaaagcat
     6961 ttctcgtttt ttgccaaatc ctttgcgttt tttcactgca aaacctgcgg cttccagccc
     7021 tcgtctgacc atacttgaag cggtaaaagt agcaaaactg ccgccattgg cacttagtcg
     7081 aaacatttgc agatataact gttcgttcca catttctggg tttttatcag gcgaaaagcc
     7141 atctaaaaac caagcgtcaa tcgtgccgct ataaagatcg cctaattggg gtaagttttc
     7201 agcaatctca ccgaaccata aatctaaata aacctgctca aaatgataac gttggcaacc
     7261 tatttggcga ggctgccaac aagcggttaa attttcagat aatgttgcaa attgcggata
     7321 gcgttggtga atatcagcta attggctggc cgtcagagga aatttctcaa atgagataaa
     7381 atagagtcgt tttagtttac tttgcggaaa tgctgcccga aactgttgga atttgtcagc
     7441 aacggctaaa aaattcaagc ccgtgccaaa gccggtttcc gcaataacaa aagcctcttt
     7501 cgggtgagat tgccactttt cccacagttg gttaccttct tgaaacacat agtaactttc
     7561 cgccaaacca tcttgggtag aaaaataaat atcatcaaat tgctccgaca ccggtgtatc
     7621 tgcatcatta aatgtaagtg tcgcaaaagt cagtttaccc atcatatccc cttaaaaaca
     7681 aaacacggaa aaccccaaga ttttccgtgt ttcaaccagt tcaatagtac caatgttaga
     7741 aaatgttgct ggcaaaaata acgatcatac caagtgcgcc tacaaccgtt agcattgaat
     7801 aaccaaaagt acccatttta caatcctcat tgttaattat gattaaaacg gctttattct
     7861 agcataattt ccatcgcttt gaatgcctat gcttgaataa ttttgccaaa acaagcggtc
     7921 aatttttgta aatcttttac gcctttggca ctttccacgc cagaatttaa atctaacccg
     7981 acacagcctt gagcaagggc ttgctcaata ttctcagtgc caataccacc tgccaataac
     8041 gctttttgtt ttaaggtttc tggaatcaac gcccaattaa aggttttgcc tgtgccgcct
     8101 tgctgattgc ctactttgct gtctaataca taacgagcaa tctgtggatt atcgttaaat
     8161 tctagatttt caacctcaac atcaaccgat aaggctttcc agatttgagt tttactacct
     8221 aatttctctg ccagttctgc aatgtattgc tcatcttccg agccgtgcaa ttgaactgca
     8281 aataactcaa gctgttttgc cattttttcc acaaattcga ccgcttgatt ttggaacacc
     8341 cccacataac gcaacggtgc attcaccacc aattcttggg cttggcgaag tgaaagctgg
     8401 cgaggcgagc cttcggcaaa aattaaaccg ccatataatg ccccttgctc ataaaccgct
     8461 ttcacatctt gcacacgggt taagccacac actttgtttt caccaaaaat caccgcccgc
     8521 accgcattat tgagatcggc acttcccatt aaactgctgc cgattaaaaa agcatgaaca
     8581 tacggcttaa tgtttttcac ttgctggtga tcgttaatac ccgattctga aatcaaacag
     8641 acatcagccg aaatttgggc ttggtatttt tccaccaaac gcacaatgcg gttcatatca
     8701 atcgtgagcg tgtgcaaatc acggttatta acgccaatta ccttcgcccc taaggctaag
     8761 gcacgttcaa attccgcctc cgtgctggtt tcagtcaaaa cgcccattcc taactcgtga
     8821 gccagtgtgg caagttcacg gtaggtttca tcatttacca ccgataacat caataaaatc
     8881 gcatcagcat tataaaaacg ggcaaggtaa acctggtatg ccgaaatcat aaaatcttta
     8941 cacaaaatcg gctgtgtggt ttggcgtttg acttgatcga tataacggaa atcgccttga
     9001 aaatattgct catcggttaa aaccgaaatc gccgcagcgt aatttttata cacttgggca
     9061 atactgtcta aatcgaactc agcacgaatt aacccttttg acggtgaagc ttttttacat
     9121 tctaaaatat aagctggttc ttggtgtgtg cctttggcaa gagccgcata gaaatcatgg
     9181 tcgcttttta caattttgtg ctgaaattca cttaacggaa aggcttgctc tttttgtgcc
     9241 acccaaatgg ctttatcttg tacgatcttt tgtaaaatcg tcggttggtt tggttgagcg
     9301 ttatcttgaa cgatgttttg catataaatt cctagagcga aatcggtttg aatggtaaaa
     9361 tctgccctta tttttacccg aaaaagtctc atttcacaag caaaactaag atgaaatcac
     9421 aagttataca gcatttatct tatttagaaa tcgccctgag agttaatcaa ctttgggagg
     9481 cgacaccacc aagccctgaa gccttagcca atgagcaacc tttctgcgtg gaaaccttaa
     9541 ccccaaccca atggctacaa tggattttta ttcccagaat gcgggccatt ttagatgcaa
     9601 atgccgattt acctcgcaat tttgcaatca ccccttattt agaagaggca ttgaaaaacg
     9661 aaggttattt acaagcgatt tgtgaaccgc tattaggttt ggaaaagttg ttgaaagatt
     9721 aacttctctc tcagttcttt tattaatctg acaaattcgt tgatagtgcc agcgtccacg
     9781 ctggtactaa ttttaacggt taattaatca aaatttggca caagcgagga cgcttgcgcc
     9841 atcatagaga tttgataaat tatacttaat gtattatgac cttagatatt ttataccaag
     9901 acaactcgct tatcgccatc aacaaacctg ccggagtgtt ggtgcatcgt tcttggttag
     9961 ataaacacga aacggtgttt gcaatgcaaa ccctgaggga tcaaatcggg caacacgttt
    10021 ttccgattca ccgccttgac cgcccaacct caggtgtatt gctgtttgct ctcaacagcg
    10081 aaaccgcccg aataatgagc gagcagtttg aacaacacct agtacaaaaa acttatttgg
    10141 cggtggtgcg tggctattta caaggttcgg cacaaattga ttatccgctc aaagtgattt
    10201 tagataaaat tgcggataaa ttttctcagg aaaaagaggc tcaagcggcg attactgatt
    10261 ataaaggctt agcaacggtt gaaatgcctt accctgtcgg caagcaccaa acctctcgtt
    10321 atagtttggt tgaacttagc cctaaaaccg ggcggaaaca tcagcttcgc cgccacctga
    10381 aacacctgtt ccacccgatt atgggagaca gcaaatatgg cgacttacac caaaaccgtg
    10441 ctttagttga aaaatcaggc gtaagtcgtt taatgttaca cgcccataaa ttgcaatttc
    10501 agcacccgaa aaatttgcaa aaaatagaga taattgcatc gcttgatgag caatggcaac
    10561 gcctctttgc attttttgac tggaacttta ctcaatatta ttagacaaaa aagaggattg
    10621 aatggataat tcacttttat cattgacaca cgagcaacaa caagccgcag tagaagaaat
    10681 tcaaaaactg atggcacaag gcatcagtgc cggagaggca attcaaatta ttgctaatca
    10741 attacgtgac aaatatcaaa tattggagaa atcaaacaat gaataaatta tggacagtgc
    10801 ttgccctaac aataacttcc cactatagct ttgctgccgc tgaaaaaata gtcactaaag
    10861 atttaccggc agaaggaaaa cctgcagtcg tgctacaggt ttttgatgaa agtgaaaaaa
    10921 ttgcaaaacc tattaaggga aataagctct ttattagcaa aaaacaaaca aggctttgct
    10981 ggcacagtat taatcttcct gtacaaaata aagttactat tgcagaagct ttctatgccc
    11041 ctgctgcaat gaaattagct tctcccggct ctaaaattaa ttcttctgca gacaagaaaa
    11101 atcatactat cattactgaa ataaaccttg caaataatca agtattaaat cgttgctggg
    11161 gttttgataa aactgaccct gtcggtaaat acaaaatgga aattcaaatt aacgatcaca
    11221 ttttcaaagg tttagaattt gaaattgtaa aataacctaa aagccacaga gtaacaccct
    11281 gtggcttttt gctaaatcat tgtttttaaa ttggttaaat tgtgcagcaa ataatcttta
    11341 ctcttcacaa aggctctcgc ctgttgccag ttgctaaatt gttgctgagt gcattgatta
    11401 aaacgtacca gcacttccaa actttcattg ccgacacaaa taaaatcagc taataattgg
    11461 gttaattttt cactgttttc accatccatt gcagttgcaa ttttctgctc ccatttaacc
    11521 gcttgtccga gcaaataacc ccgctgggct ttgcttaaat tactcaacca catcccatcc
    11581 gcttttggca ttgcctcaac caaagtaaat aagtcgccta gatttccttg cttgatttca
    11641 aactccaatt cacaaatcgg ctcttcacca aaatgatttt taatgatgcc ctgatctaac
    11701 gctacctcaa tgtcagacat ccccacttgc accaaccaag ttttacgagt gaaatcggtg
    11761 ctgaatatcg cttgcaagct ttctgcaatc tgctctgaat tttcaaacgg caactggtat
    11821 ttttccacta atgtttgaaa atccggctgg ctattgggta aagctaaatt atattccgga
    11881 cgaatatgca aaccgcctac aatttcccct tgtgttttta acgtgatttc atattgttga
    11941 ttcacagaac gcacccgcag ccccattttt tgcgtggcaa aaaattgctc gggcgtatca
    12001 taataggtgt tgcctaacaa ttccgtttga tgagcaagca cagggaatgg cgaggtttga
    12061 ttcaagtagt tttccactaa cgccacattc tgctgttcca acattatttt cagttcgatt
    12121 tctgcttgtt tttggttttc catttcacac gcccctgcaa cgttgtataa tcaagcggtt
    12181 attttatcaa taaattttgc aaaatgtttt caaaaattca ccataaactg aataactttg
    12241 tccagcgtgg actcgacaac catttacgcc tcgccgttac cggcttaagc cgtagtggca
    12301 aaacggcatt tattaccagc ttggttgatc agcttttgca tatcaacaaa ggcggtaatt
    12361 cgcatttaaa cctgtttgcg cctgcacgcc acgggcaaat tctatcggta aaacgcgttg
    12421 agcaagggga tttaactatt ccccgctttg aatatgataa aaaccgccaa agccttgaaa
    12481 atcaaccacc tcaatggcct gaatccacca ctggcattag cgaaattcgc cttgcgattc
    12541 gctaccagcg gcaacattct ctgctacgtc atattaaaga aaccggcacg ctttatttgg
    12601 atattttcga ttacccgggc gaatggctgt tagatttacc cctgctctcc ctttcctata
    12661 aagaatggtc gcaaacgcaa caaaccatac ataaagatga gcgtgcagag cttgccacac
    12721 cttggttaca agcggttaaa aaactcgatc tttttgcaaa aaccgatgaa aatttactgg
    12781 cagaattcag ccaacaatac accgattatt tgctcgcctg caaagctcaa ggaatgcaat
    12841 atattcagcc ggggcgattt gtgttgccaa ctgaaaatgc caaaggtgca ccggtattcc
    12901 aattttttcc gttattagat ttaagcgaag ctgagtggga aaagttggaa caaagcgaca
    12961 gaaacagtat tttccatacc ctcaaaaaac gctatgagca ttaccagaaa aaaatcgtca
    13021 aaccgtttta tgaagattac ttctctcaat ttgaccgcca agtgattttg gcagactgcc
    13081 tcacaccgtt aaattatggc tataacgaat ttatggaaat gaaattaggg ttacagcaac
    13141 tgtttaaaca tttccattat ggcaatcgtt cgctatttca ccgtctgttt tcgtccaaca
    13201 ttgataaatt gctatttatc gcaacaaagg cagatcacat tactagcgac caagtgccga
    13261 atttggaaag cctaatgcga caattagtgc aagaaggggg aagacacgca gaatttgatg
    13321 gtatcgaaac cggctattta gccatttcct cgattcaagc aaccgatgcg gtgaaagtga
    13381 ctcagcaaga taaaatcatt aaagcgataa gagggatccg ttccagcgat agaaaacaag
    13441 tgacactcta ccctggcagc gtgccaaatc gcatacccga taaaaattac tggcaattta
    13501 accgttttga attcgaccaa ttcgagccca agcaacttga ttatagccaa gcgattccac
    13561 acttcagaat ggattcggtg ctacaatttt tattggcgga tatgtttgag taaaatcttg
    13621 ttgcatattt ccattaaagg tataaaattt tatacattat gaatactgta atttcccaac
    13681 gaaaaccaat tcactgggtt ggatcaacct tagatgatat tcgtgaattt ccggataaca
    13741 ttaaaagaga actcggtttt gatcttgatt tagttcagca aggcttatta ccgagggatt
    13801 ttaaagcgat ggcaaatttg ggttcaggcg taatggaaat tcgagtaaaa gatccctcag
    13861 gggcttttcg cttagtgtat ttagctaaat ttaaagatgc aatttactgt ttacacgctt
    13921 tccaaaagaa aacgcaaaaa acagccccta aagacattgc tgtcattaaa gcacgctatg
    13981 ctgccgtaaa ggagttagaa aatgaataat attgatacta aaattcgcca tactacagaa
    14041 gctcagggta atgtttttga agatcttggt ttccctattg atgaagctca aaaattgaaa
    14101 tctgccagtc agcaactgat tgaaactaaa ctgatgctaa tgaatgaaat gagcaactgg
    14161 attgataaaa ataatctcaa acaatcagaa gcggcttcta ttctaggtgt tagccgccct
    14221 cgaatttctg atatggtcaa tggcaagtta gaaaagttta ccctagatac cttagtcact
    14281 tttgttgcaa aaaccggcaa aacaatccaa ttgcaattat cctgatattt gcaaaatttt
    14341 actcaaattc aaccgcttgt tgcttttatc attcactaac aaggttattt caagtaaaat
    14401 tgtgactaat tttttattaa taaacacaaa ttatggcaaa aaaacctaaa gttgcatcaa
    14461 atacgattgc gttaaataaa cgtgccagac acgaatattt cattgaagat gaaattgaag
    14521 ccggcttaga gctacagggc tgggaagtca aagcattgcg tgccggaaaa ggcaatatca
    14581 gcgatagcta tgtcatcttt cgccacggcg aagccttctt attcggggca atgattacgc
    14641 ctttgaatat ggcatcaacc catattgtca gcgacccgac ccgcacccgc aaacttctac
    14701 tgaataaacg tgagttagac tcactgttcg gtaaagttaa tcgtgaaggt tataccattg
    14761 ttgccacctc aatgtattgg aaaaatgcgt gggtgaaagt aaaaatcggc ttagccaaag
    14821 ggaaaaaact gcacgataaa cgtgaagata ttaaagaccg tgaatggcaa gtggctaaac
    14881 agcgtattat gaaaaacgcc aatcgtggct aaatgaataa ttaccctctc cccttgtggg
    14941 agagggacag aaaaattgcg ttcagcaatt tttcagggaa agggggattt gtaaaagttc
    15001 aaggaaaaac aacgcttgcc ctctctctga aaaatatttc tgaacgaaat atttttcggt
    15061 ctctctccca taaagggaga gagtgaaaca caaatttaaa ctaaggaaca tacaatgatc
    15121 gaccaaaacc tacttcgtac caatttagaa gacgttgcta cagctcttaa aatcaaacgt
    15181 aattttattt tagatgtaga gcgagtaaaa acccttgaag aacagcgtaa aacgctacaa
    15241 gttaaaaccg aaaccttaca agcagaacgc aacactcgct ccaaaaacat cggtgcggca
    15301 aaagctcgtg gcgaagatat ttcagcttta ttagccgaag tagattcaat gggcaacgaa
    15361 ttagacacgg caaaagtaga attggataaa gtacaggcag aaatccgtga gttgttgctt
    15421 tctgtgccaa acttaccggc agatgaagta ccactcggta aagacgatag cgaaaactta
    15481 gaagtattac gttggggcga accacgtcaa ttcgactttg aagttcaaga tcacgttacc
    15541 cttggcgaaa acttaaacgg tttagatttt gctgccggtg taaaattaac cgccagccgt
    15601 tttgtggtaa tgaaaggtaa acttgcccgc ttacaccgtg cattatctca atttatgttg
    15661 gatttacaca ctgaacaaca cggctatgtg gaaaccaatg tgccattttt agtcaatcac
    15721 gacactctat acggcacagg tcagctacca aaatttggcg aagatttatt ccatactcaa
    15781 ccattaacag ggcaagatcc aaacgaggtg caacgcccat tcggtttgat tccaaccgct
    15841 gaagtgccag taacgaactt agtgcgagat gaaatcattg atgaagacag cttaccactg
    15901 cgttataccg cccacacccc ttgtttccgt gcagaagccg gttcttatgg gcgtgatact
    15961 cgtggtttaa ttcgtatgca ccaatttgaa aaagtggaaa tggtgcaaat tgtcgcccct
    16021 gaaaaatcaa tggaagcctt agaagaatta accggtcacg cagaaaaagt cttacagctt
    16081 ttaggcttgc cataccgcaa agtgctactc tgcactggtg atatgggctt tggtgcagca
    16141 aaaacctacg acttagaagt ttggctaccg gcacaaaaca cttaccgtga gatttcttct
    16201 tgctcaaata tgtgggattt ccaagcccgc cgaatgtctg cacgttgtaa agctaaaggc
    16261 gacaagaaaa ctcgcttggt tcacacctta aacggctcag gtttagcggt tggtcgcaca
    16321 ctggtcgctg tgttagaaaa ctaccaaaat gccgatggct ctattactgt gcctgaggtg
    16381 ttaagacctt atatgggtgg tttggaagta attaccgctt aagattaata aatgaaacca
    16441 atctcagaaa tggggttggt ttttttaata aatcttatcc ctaatctttt tcaggataat
    16501 tcataaaaat ttcagtaact actcggcggt tttgcactgt atctaaacga ataggatttt
    16561 tcattctccc taaacgaaat gcaataatgg tgactttttt cggttcatct attttatcta
    16621 attgatagaa taccattatt tcccgttgat aaaccgctcg ctttctgaaa cgtaaatcct
    16681 tgcgaaatgc gacacctgct tttggataaa actgtaaacc attgatgata ttcgtttgag
    16741 tatgctccga aaataatcca tagaaaataa actctaatag attattttta aaatcaacac
    16801 taaccatcta actgctccca agcagttaaa tctcctcgtg ataaacgttc agcaatatca
    16861 gcataaaatt gtttcggtac ttcccttttt acttggtatt gagctgattg ttcttctaat
    16921 aaatgttctt ctatcatctt gatttcttct gttgtccact cttcatcttc tttatgtaca
    16981 acaaaatcgg tatctacaat cacaatagac atacctagct ccttcaagta ctggttatat
    17041 attctgtatt ttgcctgttc taaattcagc tgtctagctt ttctgttact cacaatttgc
    17101 aaatttttca tcaaattcca ccgcttgcca ttcaaaaaaa ggcgtttttg cggtatccta
    17161 tcggcaattt tttcagttaa atttaaaggt taaattttat gcaacagcag tataacccaa
    17221 gtgagattga acctaaggtt cagcgttatt gggcagaaaa taaagttttt aaagcagtta
    17281 aagacgttac caaagagaaa tactattgcc tttcaatgtt gccttatccg tcaggtaagc
    17341 tacatatggg gcacgttcgt aactacacca ttggtgatgt agtgtctcgt tatcagcgta
    17401 tgatcggtaa aaatgtatta cagccgatgg gttgggacgc tttcggttta ccggcggaag
    17461 gtgctgcggt gaaaaataat accgcaccgg caaaatggac ttacgaaaac atcgaatata
    17521 tgaaaggtca gcttaaaatg ttgggcttct cttatgactg ggatcgtgaa gtcaccactt
    17581 gccgtccgga atactacaaa tgggagcaat ggttcttcac agaactttat aaaaaaggct
    17641 tagtgtataa aaaaacctca accgtaaact ggtgtccgaa tgatgaaact gtgcttgcca
    17701 acgagcaagt tcacgaaggt tgttgctggc gttgtgacac cccagtggaa cagcgtgaaa
    17761 ttccacaatg gtttatcaaa atcactgact atgctgaaga attactcaat cagttagata
    17821 atctcccaca gtggccggat caagtaaaaa ccatgcaacg caactggatc ggtcgttccg
    17881 aaggggtaga aatcaccttt aaaattgccg gttcaaacgt agaattaccg gtttacacta
    17941 cccgtccgga taccttcttc ggcgtaagct atgtggcgat tgctgcggct cacccattag
    18001 cagaattagc tgcacaaaat aacccggcat tggctgaatt tatccgtgaa gcgaaaaaca
    18061 ccaaagtggc agaagcagaa ttagccacca tggagaaaaa aggaatggca accggcttgt
    18121 tcgccattca cccgttaaca ggaaaagaag taccggtttg ggttgctaac tttgtgttaa
    18181 tgcactacgg tacaggtgcg gtaatggcgg ttccggctca cgatgagcgt gactttgaat
    18241 ttgcacaaaa atacgatttg caaattaatc aggtaattca accgcttgat ggctcagagt
    18301 gggatttcag caaagccgct tacaccgaac acggtaaatt aatcaactct gccgagtttg
    18361 acggcttgga atttgatgtg gctttcactg cgattgccga taaattagag gcaatgggtg
    18421 taggtaaacg ccaagtgaat ttccgtctgc gtgactgggg tgtttctcgt caacgttatt
    18481 ggggtgcacc aatcccaatg atgaccacag aagagggcga agtggttacc gttccattac
    18541 aagatttacc ggtgattctc cctgaagatg tggtaatgaa cggcgtgcaa agcccaatca
    18601 aagccgaccc agagtgggcg aaaaccactt acaacggcaa accggcattg cgtgaaaccg
    18661 ataccttcga tacctttatg gagtcctctt ggtattatgc acgttatact tgcccacaat
    18721 atcacgaagg aatgttagat tcagacgagg caaactactg gctaccggtc gatcaatata
    18781 tcggcggtat tgaacacgcc acaatgcact tgctctactt ccgtttcttc cataaattgt
    18841 tgcgtgatgc gggtatttta aattcggacg aaccggcgac taaactgtta tgccaaggta
    18901 tggtgcttgc cgatgcgttc tactacacca gcccaactaa cgagcgtatt tgggtcagcc
    18961 cgacacaagt caccttagaa cgtgatgaga aaggtcgtat catcaaagca accgatccac
    19021 aagggcgtga gctggttcac agcggtatga ctaaaatgtc gaaatcaaag aacaacggta
    19081 tcgatccgca agaaatggtg gaaaaatatg gtgctgacac agttcgcttg tttatgatgt
    19141 ttgcctcccc tgcggaaatg acattagaat ggcaagaatc cggcgttgaa ggggcaaaac
    19201 gtttcttagg tcgtgtttgg aatttagttt atagctatgc ccaaaatccg gcaacgactg
    19261 cattagatgt gaatgcctta gacaaggatc aaaaagaact tcgccgtgat gtacacaaaa
    19321 cgattgctaa ggtgagtgat gatattggtc gtcgtcaaac cttcaataca gcgattgctg
    19381 cggtgatgga attgatgaac aagctcacca aagccccact tgaaaccgaa caagataaag
    19441 ccgtaatggc agaagcttta agtgcggtgg tgcgtatgct ttacccaatc acgccacata
    19501 tctgctttga gttatggcaa gtgttaggta atgaacaaac catcgatttt gccccttggg
    19561 tacaagccga tgaatccgca atggtggaag atgaaaaatt agtggtagta caagtcaacg
    19621 gaaaagtgcg tggcaaaatc actgtttcag ctactgctac ggaagatgaa gttaaagcta
    19681 tcgctaaagc cgatccaaac gttgctaaat tcttagatgg tcagcagatt gtaaaagaaa
    19741 tctacgttcc atttaaaatg ttgagctttg cggttaaggc gtaacaaaca cactctccct
    19801 tatatgggag agagaccgat aaatatttcg tgcagaaata tttatcagag agagggtaca
    19861 agcggttatt ttcttggaaa attttgcaaa aaatagcccc ctctccctgc tttttcttct
    19921 aaacgaagaa aaacctgtcc ctctcccaca aggggagagg ggaataaaca aggaaatctc
    19981 attatgatta aaaaactctc tctcatcgct gtttttgctc ttaccgcctg cggttggcac
    20041 tttaaaaaca atgaggtatt acctgaatcg ttcagaacat taacctttga aagtgcagat
    20101 caacacagcg aaatgtctcg aattttacgc aatcagttac aactaagcga tgtaaaatta
    20161 gtgcctagca cggctaatgt ggcaaaatta cgtttggttt caacctcaac agacagcaaa
    20221 gtggtttctg tgtttaaaca agctcgtgaa gcagaaaaaa tcttaacgct aaacgttgat
    20281 gcgattgccg atattccaaa taaagggcaa taccctttag aagtttcggt tcatcgtact
    20341 ttctttgatg actctcgtgc agctttggca aagtctgctg aaaaagagat gattatgaaa
    20401 gatatgtatg aacaagcctc tcgccaatta attatcaaaa tggcgggctt aaaaaaagaa
    20461 ctctcaaaat aatcattgta ggggcgaaat atgtttcgcc cattgtttat ctgtatgcaa
    20521 aaaatctttc cggaaacact tcaattttca ttaaacaaag gactacagcc cttttatcta
    20581 ttaacaggga atgatctgct attggtgaat gaaaccaaag atgccattat tcacaccgcc
    20641 cgtctcaacg gttttgatga aaaaaaagaa gttgaaatca aaaacgatac taactgggaa
    20701 gaacttttcg aagcagctca atcaatggga ttgttttttg cacgccaaat tatggtgctg
    20761 aattttccgg attcccccac agcgacacag tttaaaaaac tggctgagct ttgtgccttt
    20821 attcatagtg atttgctctt tatcctgcac ttacctaaat tttccaaaac aatggaaaaa
    20881 caggcttggt tcacgcaaat tgagctaaat ctcgtgcaaa ttaactgcca aacaccggaa
    20941 cttagcaaac ttccacaatg ggtcagtcat cgagcaaaag cgatgaattt gcaaattgaa
    21001 aatgaagcaa accaactcct ttgttatagc tacgaaggca atctactggc gcttaaacag
    21061 gcattacaac tgctacaact caatgcaact gatggaaaaa tcacgctgac aaaagcccaa
    21121 gaagtggttg aacactccgc ccaatttact ccatttcaat ggattgatgc attatttgaa
    21181 ggaaaaatcc aaagagctca acgcattttg taccatctgc aaaatgaaga agtacaagcg
    21241 gtcgttttat taagaattgt gcaaaaagag ttgatgattt tactcgaaat cactcgcaac
    21301 ccaaccgcag tcgtttccag cgaacaatca ctttttatcg gtaatttacg aacagaattt
    21361 gaccgcttga aaatttggca aaaccgcaga cctttttaca accagatcac tcaacgactg
    21421 acttaccaaa aactttacgc cctaatccaa caactggctg aattagagcg taaggtgaaa
    21481 caagaattta gcgatgatat ttggcaagaa ttagagcgtt tttccgctca atttacctaa
    21541 ctaatacttt tctaaatctt cgctaaacaa ctccgcttct tcactggcga tagagtgctt
    21601 ttctgccgcc caatcgccta aatcaataat ttgacaacgc tcgctacaaa acgggcggta
    21661 tttactttct ttactccaca ccacttcttt ttcacaagtc gggcagttta caatagtttc
    21721 tggcattctt tttccttttt tgctaatgct aagtatttat aatgtaaggc ttgaacctgc
    21781 tctttaatta aaagcaagcc ctgttcaaat ggcaagttat tttcaatcac atcatcagca
    21841 taacttaatc tttcttcacg gctgacttgg gctgccataa tatttttaat ggtttcaatt
    21901 ttactgttat cacgtttggt tgctctttcc agttggattt caggagaaac atcaacaacc
    21961 aatatacgat cacaatattc ggtgagctta ttttcaatta aaagcggcac gacccaaatc
    22021 acataacaag cggtcgattc ttgcaatttt tttaccattt cttctcgaat ggcggggtga
    22081 agtaaattat tgagccacgt tttttcctct tcattgttaa acacaatttg gcgaagttta
    22141 gtgcgttcta atgctttttc agcggttaag atctcttcac caaaatgctc tacaatcttg
    22201 gctaaaagcg gtgtacccgg ttcaacaact tggcgagcca ccacatcagc atcaattacc
    22261 tctaccccaa gagctgaaaa taaatcagac actgtggttt tgccactgcc tattccaccg
    22321 gttaagccta caacgtaagt cataaaaatt gattcctcaa aataaaaaca aaccaattct
    22381 agtaattaat ccctctgctt tcaagcatta gcaccagcaa catcgctgtg ctaataaacg
    22441 gaataaacgc caattttgct aatttctgct ttttcattag ccaataagcc aagtaataac
    22501 caatccctag caggctggcg gttaatatca ataagagcat tttttcgagc cgaaagagtg
    22561 gggataacgc aaccaataac aacatatcgc ccgagccaaa tgcctccttt ttaaacataa
    22621 gctgtgaaac caagccaatc aacaggcaaa aagcaagggt aaaggtaaaa gtttggtgtt
    22681 ggaaatcggc taaactctcc cataacacca acaaaaatat aagcacgagg tagcgaatat
    22741 ccgttaggta atagcacata tccagcagtg ataaaaaaca gagcagaata aaaatcgtgc
    22801 cgataatagg gctttccgag cagagcataa tcaatggaaa aaggagaaaa aatagatttg
    22861 ccgatcgggg ttgtttcggt tgtagcaccg attgagccaa aaactgttgc tcggttaagc
    22921 caatattcac taatgaagtt gtttcttggt aaatttggcg attgactcga atggcaaatc
    22981 gagggatctc cgctttgagc caaaccgcaa tgaagaggga aaacagtatt aacatcgcta
    23041 ctccaccaaa gcccccatat caaaaatcgg taaatacagc ccaacaataa tagtgccgac
    23101 aatcacgccc attatcaaca ttagcatcgg ttctaatagc tgagacaaaa tatcaatttg
    23161 gtaatctaat ttttgttggt acatctcact aatatgctca cacattttcg ccacattgcc
    23221 acttttctcc ccaacctcaa gcatttgtgc catctcagca ccaaacacat tcgggttgat
    23281 cccttgtgaa aatttgtagc cttgttgtaa caaattaagc atagtgccaa tttcttgctg
    23341 taaaatcggg tcatcatttt tctcggataa aaacgacctc aaggcaacat caagcggaat
    23401 atgagcattc agcattaagg caatattttg gctgaaaaag ataatgcgag attgctcaat
    23461 aattcggcta aacagtggca ttttagccca tagagccatt ttccactttg cgactaacct
    23521 gctctttttt gcaaaaaaca ggtaaaaaat gaccgctagt agtaacgtgc caagtaatac
    23581 tgtgccttgc tcaatcaagc attcggaaag ggtaaataaa atatcggtaa tgaggggtaa
    23641 agttttgtct tttgagccat aaagttgggc aaactgcggt acaatcaaaa ccaatagccc
    23701 gatagataaa gcgagcgaaa tcagcaacac aatcaccggg taaaacagga ttttcttcac
    23761 ttttttcgcc aatttttcca atttcgctcg gctttcagct aaattagtca gcataatgcc
    23821 cagttttccg ctttgttcgc ccattttgat tagctgaatt tcctgattgg tcacaaattc
    23881 acccaatttc tccaacgatt gtgaaaaagc atagccactt tcaatatgct gaatcagctc
    23941 attaagccat agataaaggc ggatatttcg gcagttttgc aacaacatag ataatgcctg
    24001 ttttaacggc atggcagaat taaccaacaa tgcaagctgt gatagcaagc tattcacctc
    24061 ttcttttttc gggtttgctg aaagcacaaa atttcggcta atccgaatat gctgataacc
    24121 ttgtgccagc aaaaggtttt ccaacatgtc tcgattcgtt gccaaccgct tgccccgctg
    24181 tttttgccca aatcggctct gggcttgcca atgaaattca tagattttcg tcattgccta
    24241 agcaatttct ctttttgtgg ttcaaaatga atatctgagg cgttgtgttg caaacagaac
    24301 ttaaataaat tctctaaaat ttggataatc ggatcgtttc tatccacttg ttccgaatga
    24361 gccaatgaat acgccgtatt ctcctcataa atctcactct gccgactact ctgctcaggc
    24421 gaaagggcat tgagtaaaaa cttcaattca tcggaggaaa tcaaaacagg ctcaatctgt
    24481 ttgtggtaga taaacgcaaa aatctcacag gcattgagat tttgcatatc atcaatccct
    24541 agccaaagct gttcttctgt ttcttgcagc ggaatggcta aatatcgcaa taaaatctgc
    24601 ttttcattgc aatttttctg ccactgctct gctgaaatct cgatgaacct ttggctgttt
    24661 aaatccgtta ccgaatactc cattttgatt tcctcacctc aaattagccg tttggtgtaa
    24721 cagttgtgct acagaaatta gctggaaata ggctcgtatc attgccacta caacttgccg
    24781 tccaactaat cgtattattt gagaacgacg gtgttaaggt atagccataa ccattcagag
    24841 agcctttgcc ggttaccgta atcacgcctt ttgttaccgc aattgagttt aggtatttag
    24901 tggtattact actggtttta ttcgcctgaa tcccattcgt gccaccggag cagttatcca
    24961 acccgccact gttgtaaata cagacttcaa cgtctgattt atacgaagca gatgcttgta
    25021 ataactccga taacgccgcc ttttgggtgt atgagttata ggaagggatc gcaatagtgg
    25081 caagaatggc aataatcgca atcacgatca tcaactcaat gagggtaaat gcccgatgca
    25141 gttggcgaat gccaagcggt ctaaaatgta caattttttg catataaatt ccttataaat
    25201 tgcaccaaca aattgtggcg aatcaagtgt gcaaattttt tgcctgcttt gcgaccggca
    25261 aattttaatt tttcgacgca gatcgaaaaa ataaaatttt tatctgttta tccatacagt
    25321 tttttgttag aatttgccaa atttactcaa ttaggaatca agaatggcaa aagcacctaa
    25381 aaccgcttat gtttgtaacg attgcggggc tgaatattcc cgttggatgg ggcaatgtaa
    25441 ggaatgtaag gcttggaata ccatcagtga agtgcggttg atttccagca aagaagcggc
    25501 gaaatctgac cgctttagcg gctatgccgg tgaaacgtca ggcaaagtac aaacgctgtc
    25561 tgacatcagc ttgcaggaag tgcctcgctt tagcagtggc tttaacgagc tggatcgtgt
    25621 actcggtggc ggcgtagtgc cggggtcagc aattctgatc ggcggtcacc cgggggcggg
    25681 gaaaagtacg ttattactgc aagtaatgtg cggtttagcc caacatctgc caacgctgta
    25741 tgtcaccggt gaagagtcgt tacaacaagt tgcaatgcgg gcaaatcact taggcttacc
    25801 aacggcaaat ctgaaaatgt tgtctgaaac ctctgtcgag catatttgca atattgcaga
    25861 tcaagaaaag cccaaaatta tggtgattga ctcgattcag gtgatgcact tgtcggatat
    25921 tcagtcctca cccggcagtg tttcacaagt gcgtgaatgt gcatctttcc ttacccgcta
    25981 cgccaaaacc cgccaagtgg cgattattat ggttgggcac gtcactaaag atggcacgct
    26041 tgccggcccg aaagtgttgg aacacgccat cgatgcttcc ttgctgttag aaggcgaatc
    26101 cgattcccgt ttccgtactt tgcgtagcca gaaaaatcgt tttggtgccg tcaatgaatt
    26161 gggcgtattt gcgatgaccg aacaagggct aaaagaggtt aaaaacccat ctgcgatttt
    26221 tttaagccgt agcgaagagc aaacgccggg cagttcggtg atggtgttat gggaaggaac
    26281 acgcccattg ttggttgaaa ttcaagcctt agtcgatcac tcaatgctgg caaaccctcg
    26341 ccgtgtggcg gttggcttag atcataaccg tttatcgcta ttacttgcgg tgctacaccg
    26401 acacggtggc ttgcagatgt cggatcaaga tgtgtttgta aatgtggtcg gtggggtgaa
    26461 agtcacggaa accagtgccg atttagcctt aattttggcg ttaatttcca gcttccgtaa
    26521 ccgtccattg ccgcaagatt tggtgatttt tggggaagtc ggcttagcag gggaaatccg
    26581 cccggttacc agtgggcaag agcggatcag cgaagccgca aaacacggct ttaaacgagc
    26641 gataattcct cacggcaatg tcccgaaaaa ggcaattaaa gatatgcagg tgttcaccgt
    26701 gaaaaaactc agtgatgcgt tagatattct gtataatctc taaaatcaag aaccgcttgt
    26761 aagtctgtct tacaagcggt ctgttttagg taaaaattta cgaatgtgcg gcagttggtc
    26821 tattgccttt ggaaatatag tataaattaa tacacaccac caacgcattt aagccggtga
    26881 ccggaatcga gccaatcagc aaaccataaa caacgaaaca ggcacaaccc agcgaattca
    26941 ccacccgcag tttaatcaca tcttttaata aaaaagaaca ggcaactaaa atcatcgcca
    27001 catagccgag tatttcaaca tagtccattt agaacctcct caaataaaat aaactgccga
    27061 tattttaaag gctgtttttt tatttgtatc tagctctaaa aatagcaaag gtttgcgttc
    27121 acatttttac ttttaaccgc ttagttatta aacagatttt cgttctaaac acataaaacg
    27181 gcaacggaaa gggttatttt catcaatttc tgaccacttt tcttctacta acgcccaatt
    27241 ttgttcatca aattcaaaga acgtatcccc ttcaatgtct gcttgaatct cagttaaata
    27301 aagtctttct gctagtggta aggcttgctt aaacagttcc cccccaccaa taatcattat
    27361 ttcagctgta tttgcaaaat ttttcgctaa ttcaaccgct tgttcgagcg attgtaccgc
    27421 ataagcccct tccaccgtaa aacctgaacg ggaaagaata atattagggc gttttggcaa
    27481 taacctgccg atagattcat aggttttccg ccccataatc accggtttgc cgagcgtgtt
    27541 ttggcgaaac caggctaaat ctaccggcaa atgccacggc atttggttat ctttgccaat
    27601 caccttgttg attgttcggg caacaataat gctgattttc attttttctc ctgttatgca
    27661 aattggtttg attttatatc aaattaagcg tgattttaca ccctaaaagt gatacttttg
    27721 gcaacattat ttttagttac aagtgaacag attatgtcaa aaactatcgt gataaaattt
    27781 ggcaccagca ctctcacaca cggcactaaa agtttaagcc gtccttatat gttagagctg
    27841 gtaaagctca attacaccaa cagcatcgtg tgattgtggt gacatccgga gctgccgctg
    27901 ccggtcggga ctatttagga caccctgaac tccctaaaac cttagcctct aagcaaatgt
    27961 tagcagcggt cgggcaaagt cagctcattc gagtgtggga aaatttattc gatatttata
    28021 atatccatat cgggcagatg ctcttaaccc gagccgatct ggacgatcgt gaacgtttcc
    28081 tcaatgcccg tgataccctt gatgccctgc ttgcacaaaa aatcattccg gtgattaatg
    28141 aaaacgatgc cgttgctacc gaagaattta aagtaggcga taacgataat ttatcggctt
    28201 tagttgcgat tttggctcaa gcagatcagc tctatttatt aaccgaccaa gaaggcttat
    28261 tcagtgccga tcctcgctca aaccctgatg ctaaattgct ctcggtggtg gaaaaaatca
    28321 cgcctgaaat ccgccaaatt gccggtggta gttcaaccgg tttaggcacg ggcggaatga
    28381 gtaccaaaat tactgctgct gatattgcta cccgctccgg tgtggaaacc atcatcgcct
    28441 ccggttctcg cccaaatgtg ttagttgatt tagcaaacgg gcaaaacatc ggcagtaaat
    28501 ttttagtcca atctgaccgc ttggaaggca gaaaacgctg gttatttgct gctccgcaag
    28561 tgggtgaaat tgtggtagat ttcggggcgg aacaagcctt gcttcaacat aaatcattac
    28621 tgccggtggg agtttctgcc atcaaaggcg aatttactcg aggtgaagta atcaaaattt
    28681 tcagccaaga cggcaaagcc ttagcactcg gcattgcccg ttatagcagt gaggcattgc
    28741 tgcgaattaa aggtaagaaa tcaaaagaaa ttgaatcgct ccttggttat gaatttggtt
    28801 ctgttgcagt gcatagtgac gaaatggtgg tgtattaatg gaattgggaa ttgatgtttt
    28861 agcaatcttg tttgccgttg cgacccttgc cggctttatc gatgccatcg ctggcggcgg
    28921 tggcttactc actattcctg cattaatggc agcagggctt cctccggcaa tggcacttgg
    28981 cacgaataaa ttacaggcgt gtggcggatc actctcttcc tcactctatt ttattcgcaa
    29041 aaaagctgtt aatttaaaac aaatttggtt gctaattcta tgcacttttt taggctctgc
    29101 cgccggtact atttttgtgc aaatgatcaa tgtcgatttc ttaaaaacat tgttgccttt
    29161 cttaattctg attatcggca tctatttttt ggtcagccct aaaattggcg atgaagatcg
    29221 taaacaacgc attagcttta ccctatttgc ctttaccgcc gctgtcgctc tcggttttta
    29281 tgatggaatg ttcggaccgg caaccggctc ttttatgact ctggcattta ttttgctgct
    29341 cggcttcaac ctctctaaag ccgtagcaca cgccaaagtg attaatttta cctccaactt
    29401 tgcctcatta attttcttta cgcttggtgg tgcggtaatg tggaaaatcg gcttaattat
    29461 gatggtcggg caatttattg gcggcacact aggtgcgaaa atggtgatga caaaaggcaa
    29521 aaaattaatc cgtccgatgc tagtgactat gtcttttatg atggtcggca aaatgctcta
    29581 cgagcaagga atttttaatt aacaatgaat aaagcaaaac gtattgagat tttaacccgt
    29641 ttacgcaatg aaaatccaaa accgacaact gaactcaatt acagtaatcc gtttgaatta
    29701 ttaattgccg tgattctatc cgcccaagcg accgataaag gcgtaaataa agccaccgat
    29761 aagctcttcc ctgtcgccaa cacgccacaa gcgattttag atttaggcgt agatgggcta
    29821 aaagagtaca tcaaaactat cggcttattt aacagcaagg cagaaaatat tatcaagacc
    29881 tgccgagatc tgatcgaaaa acataacggc gaagtgcctg aagacagaga tgccctcgaa
    29941 gcccttgccg gtgttggcag aaaaaccgcc aatgtggtga tgaataccgc attcggacac
    30001 cctacgattg cagtcgatac ccatattttc agggtgtcga accgcacgaa cttcgctccc
    30061 ggcaaaaatg tagttcaggt agaagaaaaa ctgctcaaag ttgtgccgga cgaatttaaa
    30121 gtcgatgttc accattggtt gattttacac ggacgctaca cttgcattgc ccgtaagcct
    30181 cgttgtggtt cttgtattat tgaagattta tgtgagttta aagagaagac ggaataacat
    30241 tatctggtgg tatttaatga ataactcccc tctttagaaa agtaggggct gggggagatt
    30301 tgatactatt tcaacatttc gtatgagcgt atagaaattc tgccaaatct tccctatccc
    30361 ctctttgcta aagaggggaa ctagatcgag cgtaaaatat aacaagcggt catttttttg
    30421 agattttttg caaatggata tttatttagt cggtggagca gtgcgggatc aacttcttgg
    30481 gctgccagtg aaagatagag attttttagt ggttggcgca actgccgaac aacttttagc
    30541 ccaaggattt caacaagttg gggcagattt tccggtgttt ttacaccctg aaaccaaaga
    30601 agaatatgcc cttgctcgcc aagaacgcaa gaacggcaat ggttacaacg gctttatttg
    30661 cgatttctcc ccaaacgtca cgcttgagca agatttgatc cgccgagatt taaccattaa
    30721 cgccatcgcc caagatgaaa acagcacact ttttgatcct tatggcggtg tgcaagattt
    30781 agaaaatcgg ctactccgcc acgtttctcc tgcattcagc gaagatccgc tacgggtgct
    30841 acgggttgcc cgctttgccg cccgttttca ttcatttggt tttaccattg ctcctgaaac
    30901 cctgaaatta atgcgagaga tggtacaaag cggtgaattg aaacatttaa ccgctgaacg
    30961 tgtgtggttg gaaacacaga aagcctttga aaccgataat ccgcacgttt attttgacat
    31021 tttacgctta attggggcat taaaagtgct attccctgaa ctggatcgtc tgtttggcgt
    31081 accacaacca cctcaacacc accctgaaat tgactccggc aaacacactc taatggtgct
    31141 acaacaggca aaaagacttg caaaaaaagc ggaaaatccg accgctttac tctttgcagc
    31201 cctttgccac gacttaggca aaggcttaac gcctgctgat attttgcctc atcactacgg
    31261 acacgaagtc aaaggcattc aaccaacccg agagttagcc aatcggttaa aaatcccaac
    31321 tgagattaaa gattttgccc ttttagtgac cgaataccac acgcattgcc ataaaatggc
    31381 ggaacttcgc cctgaaacgg taataaaact gtttaacagc ctagatgtgt ggcgtaaacc
    31441 aaaccgcttt tttgatttcc tgttcgcctg tgaagcggat gctagagggc gattaggttt
    31501 tgaacagcgg aattaccccc aacctgaatt ggcgaaaaaa tattaccaag ccgcaatcga
    31561 aattgatgtg cagcaagtta ttcaagacgg ttttgaaaaa caagcaattc gggaagagct
    31621 gaataaacgc agagtgtatg cggtaagaag catcaagcta gatagcgacc taataaacca
    31681 ttaggttatc cgccactttc tcaaaatcaa ttcccaaagt tcaagttggt taaatgtatg
    31741 gattctttaa aaggtggcgt tattttagtg aatttataat gttcctatgc tcttgattgt
    31801 tgtagccaca atttcagggt aaagatcagc aataacccaa tgccgaaatt ggcaatagtg
    31861 aagccggcta acccaataaa agataaaggt tcaaattgat aaaattcaat cgcacctctt
    31921 gccattgcag ctaaaccaaa tgaaaatgcc cagaaaccca tcgagaagcc attttcagct
    31981 atccatttga ggtttcgtaa aataaaacag aattgtaaga atccatatcc ccataacatt
    32041 tttgccaaca agtctaattc tccacccata gaaaaatagg cagaagcgcc cacaaatgcc
    32101 ggagcaagaa caattcctaa agatggtcta gcaatcggaa aaagcggact aagccgaatt
    32161 ctttgtaaca tagtgggttc atatactaac caggaaatta tgccaatgcc taaaaataaa
    32221 gatgcaattt cactgtagcc aattaagctt aatgaacttg ccatagtgaa gctccctgca
    32281 attggcggta ggtaatgtac cgggtgtagc gtttccggca aaaattgtgt gcctttccat
    32341 aatccaccaa taataaaaac caagaaaatt aaatgcacaa tgacgcctaa aaaaatcaat
    32401 agttcgccta aataaaaatc ccatacatag agcacatcac cgcttatcat ggttgtcatt
    32461 gtcactaagg aaaataaaca acattgcact gggtgcataa attctgcttt aatctgctca
    32521 aaacaaaaaa acacacgata cacataacag cctaataagg ctacccaaag tatgactgac
    32581 gttccagcaa tgatattacc aattgttgta gcataaggag tgataggcgt tgcatttaac
    32641 caggcaaggc ctaacgcccc cagccctaat ggcattgcaa aaaagcctgt agttattgga
    32701 aaaggtttag attcactcat aaatttatcc tcatattgaa ataatgcata actgtattcg
    32761 gctttataac agtcatatgt aaaaaatttt atttttctaa ccgcttgtaa taagaaaaac
    32821 ctaaagcact tgctttaggt tcctactact attcatactc ttctagccag atagttaaaa
    32881 tcgcttcaag aatatgttca tttgatgctt ccggatcatc atcgaaatct tccatttcac
    32941 aaatccattt atgcatatct gtaaaacgaa ccgtggtcgg gtctaaatcc gggttcatat
    33001 catacagatt ttcagcgatc attcgggtat ctgtccattt cattagtgcg ctgcctcatt
    33061 tgcgtgattt aaattatatt ttggaatttc aacaaccaaa tcttcttcac caacaataca
    33121 ttggcaactt aaacggctgt ctatttccaa tccccaagct ttatccagca tatcttcttc
    33181 ttgatctgaa gtatcattta acgaatcaaa accctcacga attaccacgt ggcaagtggt
    33241 acaagcacaa gaacagtcgc aagcgtgatg aatttcaacg cctgcttcgt gtgctacttc
    33301 taataaatta tctccggctt tagcttcaac aaccatacct tccgggcaaa attcttcgtg
    33361 tggaagaaaa acaatttttg gcattttaaa gtttccttat tactaatccc attcaatatt
    33421 atccagatgt tcgccgatga agtttaaaat ctcttcctca ttttcaacca gataaacaat
    33481 aatcttcttt aattcccttg ctttctcttt acttttctcg gaaagcggat aggtaacata
    33541 ataacatcct acgtccggat cttcttctaa taactctaat aggcttggac gataaatact
    33601 aagataagcc cgtaaaaatg cagcccagtt ataaccgttc atataggcaa catcatattc
    33661 agtattaatc cgctcgccca actcaaaaat gcggttatcc tctaaatcga attcaaccgc
    33721 aacggttctg aattgttctg aaatctcggt ttttacatag ttagacatac tgcctcctta
    33781 tgctaaatcg tccatttttt taccggctaa tgctttttga attgataaat tcatacgccg
    33841 tgctgcaaat tcttgcgtag ctaaatccac ctctttgata ccttgctgaa ttgcaaagcg
    33901 atcagtacct tcttttaatt cgattaaacg ggctaattgt gcttcaatcg cttggaactc
    33961 ctccacactc aacactgcag agccatcttc tttcaatgcc gttaccacgc tgtcaatcac
    34021 tcggtcggct tctactcgct gttcaactaa ctggcgggct tccatatctt ctttggcatt
    34081 tgccattgag gatttaatca tctgcgtaac ttcttcatcg gttaagccat aagacggttt
    34141 gatttgaatt gaagcctgca ctttggtcga tttttccatt gcagtcacgt ttaataaacc
    34201 gtctgcatca acttggtaag ttacccgaac ctgtgcaacc cctgctgcca ttgccggaat
    34261 gccacgcaaa gtgattttac cgagagagcg acaatcttcg actaattcac gctcaccttg
    34321 taaaacgtgg attgtcatcg ccgtttgacc gtctttaccg gtagtaaact cttgagctcg
    34381 agctactggg atagtagtgt tgcgtggaat aattttctcc accaaaccac ccatcgtttc
    34441 aataccaagc gaaagtggca caacatcaag caacaacata tcggaatccg gtttgtttcc
    34501 aactaaaata tccgcctgca ctgccgcacc aatggcaaca actttatccg ggtcgataga
    34561 ggttaatggc gttttaccga aaaactcgcc gacttgttca cgcacaaacg gtacacgggt
    34621 cgaaccgcct accattacca cttcacgaac ctcttctgct tcaactccgg catctttcaa
    34681 ggctcggcga caagtcatca gcgagcgttt tacaagcggt tgaattagct cattaaattg
    34741 cgaacggctt actacgcctg tccaatttgc aaatttcact tcaaattcaa ccgcttgcga
    34801 aagtgcgact ttggtttgag ttgccaaagt taataattca cgctgctcgc ttgccgtttg
    34861 aggtttgtaa tttgcctgtt cagcaatcca ttccgctaat aggtggtcga aatcatcgcc
    34921 accgagtgcg gtatcacctg cggttgctaa tacttcaaac acacctttgc gtaaacgcaa
    34981 aatagataaa tcgaaagtac cgccacctaa atcgtaaacg gcaatcacac cttcttgtcc
    35041 gctttctaaa ccataagcaa tcgctgctgc cgttggttca ttgagcaaac gtaatacatt
    35101 taaacccgca agacgtgcgg catctttggt actttggcgt tgtgcgtcat caaaataagc
    35161 cggtacggta attaccacgc ctgaaagctc accggctaaa cgcttttcgg caaattgtgc
    35221 caagtggctt aaaatatccg ccgaaacttc aatcgggctt ttattacctt gcgctgtttg
    35281 gattaaaggt aaaccgtttt cgctcgcgac aaattgataa ggtaaatttt gataacgttg
    35341 ctgaacatct gccagagaac gcccaatgag acgtttagct gaaatgacgg tatttttcgg
    35401 gtcaagtgca gctttggcaa aggcttcaat cccaactgtt ttttctgttt ccgcataatg
    35461 cactactgac ggcactaatg ctctttcttg ttcatcaagc aatacctgag tctgcccgct
    35521 acgcacagtt gccactaatg aattggttgt acctagatca attcctaccg ctaatttatg
    35581 ttgatgtggt gcagcggttt gaccgggttc agaaatttgt aataatgcca tttatttatc
    35641 tctttatctt tctaacttag ttctctattg tattaaatgg agtgaaatat attgtttaag
    35701 agaagctgga
//
LOCUS       DANLXK010000010        34748 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.010, whole genome shotgun sequence.
ACCESSION   DANLXK010000010 DANLXK010000000
VERSION     DANLXK010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34748
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXD88_000409"
     CDS             complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXD88_000409"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL6280023.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1067..1828)
                     /locus_tag="PXD88_000410"
     CDS             complement(1067..1828)
                     /locus_tag="PXD88_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL6280024.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXD88_000411"
     CDS             complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXD88_000411"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL6280025.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXD88_000412"
     CDS             complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXD88_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL6280026.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXD88_000413"
     CDS             complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXD88_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL6280027.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXD88_000414"
     CDS             complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXD88_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL6280028.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7602..11699)
                     /locus_tag="PXD88_000415"
     CDS             complement(7602..11699)
                     /locus_tag="PXD88_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL6280029.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11780..13615)
                     /locus_tag="PXD88_000416"
     CDS             complement(11780..13615)
                     /locus_tag="PXD88_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL6280030.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     SHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13627..14472)
                     /locus_tag="PXD88_000417"
     CDS             complement(13627..14472)
                     /locus_tag="PXD88_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL6280031.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14473..15636)
                     /locus_tag="PXD88_000418"
     CDS             complement(14473..15636)
                     /locus_tag="PXD88_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL6280032.1"
                     /translation="MLVKRINSYCWTAIFSGVISFSTPFSFANNLNQIQQKIQQQTSK
                     INEQKQKRNALQSTLKNQEVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEK
                     QQKEKLKEQLDSAYRSGVNPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKT
                     QADLKARRDELKGQQKDHQTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLE
                     NLRSNEQALKQQLEQAQREAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMP
                     VSGNIITPFGNNWHGVVIGASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISL
                     YGYNQSISVSKGSRVQGGQVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
     gene            15804..16487
                     /locus_tag="PXD88_000419"
     CDS             15804..16487
                     /locus_tag="PXD88_000419"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL6280033.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(16624..17181)
                     /gene="frr"
                     /locus_tag="PXD88_000420"
     CDS             complement(16624..17181)
                     /gene="frr"
                     /locus_tag="PXD88_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL6280034.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(17233..17949)
                     /gene="pyrH"
                     /locus_tag="PXD88_000421"
     CDS             complement(17233..17949)
                     /gene="pyrH"
                     /locus_tag="PXD88_000421"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL6280035.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            18041..19603
                     /locus_tag="PXD88_000422"
     CDS             18041..19603
                     /locus_tag="PXD88_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL6280036.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(19667..20518)
                     /gene="tsf"
                     /locus_tag="PXD88_000423"
     CDS             complement(19667..20518)
                     /gene="tsf"
                     /locus_tag="PXD88_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL6280037.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(20614..21333)
                     /gene="rpsB"
                     /locus_tag="PXD88_000424"
     CDS             complement(20614..21333)
                     /gene="rpsB"
                     /locus_tag="PXD88_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL6280038.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            21678..22706
                     /locus_tag="PXD88_000425"
     CDS             21678..22706
                     /locus_tag="PXD88_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6280039.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            22829..24475
                     /locus_tag="PXD88_000426"
     CDS             22829..24475
                     /locus_tag="PXD88_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6280040.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            24485..25495
                     /locus_tag="PXD88_000427"
     CDS             24485..25495
                     /locus_tag="PXD88_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280041.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            25505..26131
                     /locus_tag="PXD88_000428"
     CDS             25505..26131
                     /locus_tag="PXD88_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL6280042.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(26193..27683)
                     /locus_tag="PXD88_000429"
     CDS             complement(26193..27683)
                     /locus_tag="PXD88_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL6280043.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(27742..28977)
                     /gene="rhlB"
                     /locus_tag="PXD88_000430"
     CDS             complement(27742..28977)
                     /gene="rhlB"
                     /locus_tag="PXD88_000430"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL6280044.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(29065..29787)
                     /gene="recO"
                     /locus_tag="PXD88_000431"
     CDS             complement(29065..29787)
                     /gene="recO"
                     /locus_tag="PXD88_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL6280045.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(30017..30934)
                     /gene="era"
                     /locus_tag="PXD88_000432"
     CDS             complement(30017..30934)
                     /gene="era"
                     /locus_tag="PXD88_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL6280046.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(31037..31711)
                     /gene="rnc"
                     /locus_tag="PXD88_000433"
     CDS             complement(31037..31711)
                     /gene="rnc"
                     /locus_tag="PXD88_000433"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL6280047.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(31757..32716)
                     /gene="lepB"
                     /locus_tag="PXD88_000434"
     CDS             complement(31757..32716)
                     /gene="lepB"
                     /locus_tag="PXD88_000434"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL6280048.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(32803..34596)
                     /gene="lepA"
                     /locus_tag="PXD88_000435"
     CDS             complement(32803..34596)
                     /gene="lepA"
                     /locus_tag="PXD88_000435"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL6280049.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
BASE COUNT         9953 a         7588 c         6443 g        10764 t
ORIGIN      
        1 gtaatgtccc ttttttgaat gtctactaca aaatgggata ttttacaaac cgattgacta
       61 atgaagcaag aatataatta actacaactg gatatatttt gcaaatttcc cgataaattt
      121 caccgcttgt agataaaaac cgtagataaa aaccatagat aaaaaatagg agctaaacat
      181 ttttagcccc taccgtcatc agaaataaat cccgactaaa atcgccacga acacacctaa
      241 gccgaaatag tggttattta gaaacgcttt aaagcattcg ctacgttctc tttttttggt
      301 cagccaacat tggtagataa acagcgtggc acttaaggct aatacgacaa aatagccgat
      361 gtgataatct tttaccacgc ccaataaccc caataaaatc aaggtgataa actgtaataa
      421 cgcaataatt ttattatcgt attgagcgaa taaaattgca gtggatttaa ctccaattcg
      481 taaatcatcg tcacgatcaa ccattgcata ttgggtgtcg taggcgactg tccacgctag
      541 attggcaaaa aacagcagcc agcattcaag tggaagagtt tccgttaccg caccaaatgc
      601 catcggaatc gaccaaccga atgccattcc aagcactact tgtggcaagt gggtaaaacg
      661 cttcataaag ggataaatca ccgccagaaa aactgccaca aaggaaagca gaaacgcata
      721 gcggtttagc attaaatcga gcagaaaagc gaacaacagc aagatggcaa aaatgacttt
      781 tgcctcagtg gtggtcactc tgccggtagc taatgggcgt tgagaggtgc gtttaacgtg
      841 tccgtcaatt tctctatcgg cataatcatt aatcacacaa cctgccgcac gcataacgat
      901 taccccaagg gtaaaaatgg ctaaaatcgc aacaggcggc attccctctg cggcaataaa
      961 taacgcccat agtgtggggt gtaataataa taacgtgccg atgggtttat cgaaacgcat
     1021 taactgggcg taggcaatcc atttttgttt agaaaaaaga gtttcgttat tcattacaaa
     1081 ttttgacgat aacgtccgat tggcttaaat gagtctgtaa ttctaacggt aaatcttgat
     1141 ctgtaaacaa ataatttact tctttaacat ttcctaaacg tgcaatagct gtacgggtaa
     1201 actttgaatg atcggtcact aaaaccactt gtcgggaaca ttccattaat gcacgcttta
     1261 cctgcacttc gtggtaatcg taatcgagca tagagccgtc catatccacc gcactaatgc
     1321 ctaaaatccc aaagtccaaa cggaattggt taataaagcg aaccgtttct tctccgatta
     1381 gcccgccatc acttcttagc cctccgcctg ctaccgtaat ttggcaatct tcattttgca
     1441 tcagaatatg agccgcattt aaattattgg taactacttt taaattttta tgcgaaagta
     1501 aggctaatgc cactgcttct gaagtcgtgc caatatctaa aaataatgat gctccatttg
     1561 gaatcagttt tgccacctgt tgggcaatcg catttttctc gtgtgagaaa aattgcttgc
     1621 ggtgggtgta atcactattc tccgtattgg aaggagcggc tgccccaccg tgatgacggc
     1681 gaatcagatt attttctgcc atttcattca gatcacggcg aatggtttgc ggactcacat
     1741 tcaattcagc cactaattgc tcggtactca catagccaag ctgattaacc agctcaatga
     1801 tctttttgtg tctgtttgcc tgtttcatat ttcctctttt gcaaataatt tgcagaaaaa
     1861 gaccgcttgc aagcggtctt ttttcagtta aattttacaa tttatcaaca agttcaaccg
     1921 catagccgat atagcttgcc ggtgtcatct ctttcaaacg atttttttca ttttccggaa
     1981 tttccaactt atcgataaac tcacgcattg cggtttcatc aacccgtttg cctcgagtca
     2041 gctctttaag tttttcatac ggtttttcaa tgccataacg acgcataaca gtttgaattg
     2101 gctctgccaa tacttcccag ttttggttga gttcatcacg caagtgttgt tcattcactt
     2161 ctaatttgct aatacctttt aaggtggacg cataagcaat taacgcataa cctaaaccta
     2221 cacctaaatt acgcaacacg gtggagtcag ttaagtcacg ctgccagcga gaaatcggca
     2281 atttttgccc caaatgagcc attaccgcat ttgccaagcc aagattgcct tcggaatttt
     2341 caaaatcaat cgggttcact ttatgtggca ttgtgctaga gccgatttca ccggcaatag
     2401 tgcgttgttt gaagtgattt aaggcaatgt agccccacat atcacgatca aaatcaatta
     2461 aaatcgtatt aaaacgagcc acgcaatcaa agaactccgc aatataatcg tgcggttcaa
     2521 tttgggtggt gtatgggttc cacgtcacac ctaacgattc cacaaattct tggctgaaag
     2581 tgtgccaatc aatctccgga tatgctgata aatgtgcgtt atagttgccc actgctccat
     2641 tgattttagc gagaatttct aaattttcta actgtttata ttggcgttgt aaacgatatg
     2701 ccacatttgc catctcttta cccattgtgg tcgggcttgc cggctgaccg tgtgtgcgag
     2761 aaagcaacgg aatatgttgg taacatttcg ccagctctgc tacagcatca atcacttttt
     2821 tccattcagg taataatact tcttcacgag cggttttaag cattaaagcg tgcgaagtat
     2881 tattgatatc ttcagaagta caagcaaaat gaataaattc attcaccgct tgtaattcag
     2941 gcaacgcttc acatttctct tttaggaaat actccaccgc ttttacatcg tggttggtgg
     3001 tacgttcaat cgttttaatc cgattggcat cttctaacga aaaatcagcc acaatttggt
     3061 ttaggtaatc gtttgctttt tcagaaaaca ctggaacttc attaatttgt gtatgcgatg
     3121 ccaatttttg taaccagcga acttccaccg tcacacggaa ttttaataag ccaaattcac
     3181 taaaaatcgg acgaaggctc gcaactttgt cttgataacg tccatcaatc ggggataacg
     3241 cagttaaagc ggtaagttcc attgttttat attctccaaa taggtaaatg ttcggttaga
     3301 tttgacgata aaatttctgt gcttggttaa aaattttctt gcgtgaaaat aaaaattgcc
     3361 aacggcttcc gccgacttgc tgccacaaaa taccggctcg aataccggct agtagcgagg
     3421 ctcgaatttt attctgtata tccgggcgaa ccaagtaatc ttgcattccc atcacgtgaa
     3481 ttttcgtacc taacgggctg ataatatcgc tataaatagc ggctaaattg gcaatcattt
     3541 gatctgccat cacattatct tcatacaggg ctaactggcg ttccacttgc tgtaaacgct
     3601 gggctaactg ttgttttgct tcagggtttt tattgagttt ttggctaagg gcgagcaggc
     3661 ttatccaata acgtccgact tcggtatcta atttgccgtt accgccgcca gtttgagcta
     3721 atgcggtttc taagcccatt tttaaatggg aaagatcatc gccaaataca cttaacgttg
     3781 attccggctg agtgattaac aggctttcta aagcacactt aaaagcctct ctgtctgcca
     3841 tgcctttatg tgcaaattgt tgcactaacg tcgccgcttg gcaaacgccg gcataagcaa
     3901 gggtaatatc gtggtaatcc gccatctctg taaaattcaa tatgataaaa cattagtggg
     3961 aatatagcat tttttcagct tcttttgaat ggcaaaaggc atttattcta ttgaaaaata
     4021 aatgcctttt cattaatacg caatttgctg caaaaactat cctaccaatc gcccattatc
     4081 tattcgataa accacatcaa atttatccag tccgctttgg cggtgagtga tcataattaa
     4141 ggtgcgatca cagcagtgag tcaaaattag gtttaaaatc tgctgttcgg tttctctgtc
     4201 cagtccttct gttggctcat caagtaagac taattcagca gaactcagga gcaaacgggc
     4261 aagccctaaa cggcgttgtt cgccaccaga aagcggtctg ccgccctcgc ctaaccataa
     4321 atttaagccg tctgtttcaa gcaaatgccc taagcctact tttcttactg cttcttgcat
     4381 ttgttcgtct gtagcttgag cattccccat taataaatta tcttttaggg tttggctaaa
     4441 aatatgcact cgttggctta aggtaactaa ttttgagcgt aacatcggct ctgaatattc
     4501 gtcaatttta caattattca gccaaatttg accgcttgta gggtcgtagt tgcggtttaa
     4561 cagttggaat atggtcgatt ttccgctacc cgttttacct aagattgcca ctttctgccc
     4621 ttttaatacc ttaaaggaaa gattatttag tacgttttgc tcgccgtaat aagcaaagct
     4681 cacgttttca cagcgtacaa gcggttgatt ttggctcaaa ttttgccatt ctgccttgct
     4741 accaaatgtt acattaggct gttgttcggt aatttcacta atccgctcgg cggcggtaat
     4801 cacttgccct aaatgcaaaa aggcgatacc aatcggggaa agaatctccg ccgatgccat
     4861 tacacagaaa atcactaacg caattaaggc ttcagggtat tttgcagtgg gcacattaat
     4921 cgaagttgaa accaaataga tcaccacaca agtcaaaatg ccgttggata acattatcaa
     4981 gctatttgat aagccggaca gtcggctttc tttgctttga gcgttcagcc attgttgttc
     5041 agtttgctgt agtttttcgc tcatttggtt caagttgcca aagagtaaaa attctgcatt
     5101 taactgtacc cactcaataa attggctgcg gtaatttgct cggctttgta ttgcattacg
     5161 ccctaatttc aaacccaatc gataaaatac ggtaggaata acggcaagca ataccaatag
     5221 tgtgccgcaa atgatcagca ttaatggcac ggaaacaaaa gaaagcccga ttgccataaa
     5281 tgcaataatc atcactgcac tgacaaaagg cgagactaaa ttcagatata gggtgtctaa
     5341 cgtatccaca tctgccacca agcggtttaa caattcgctg tttctaaagc gatttagccc
     5401 gcttggactc agtggaatca attttttaaa gacgctagca cgcaaattcg ccaatacccg
     5461 aaaagtcgca tcgtgggtga ctaaacgttc aaagtaacgt gaaattgtcc gccctactgc
     5521 caaccctctc acccccgatg aagggtagaa aaagttaaaa ataagcgcat tgccggctag
     5581 aaatgaggca gctaaaaacc aaccggaaag gctgagcaaa ccgatacttg ccgctaatcc
     5641 taaaattgcc agcacaacac ctaataatag tcgcccaaaa tgggtttggt agagagcaaa
     5701 aaacgggaac aacgatttca ttagatttct ccctgatgca ctaattcatt atgtattaat
     5761 tccgcaaaaa agccggtgtg ttctaattca gtgaaacgac ctttctgaat gatttgccct
     5821 tgtttcatca cccaaatttc atcgcattgg gttaaatctt ccactcgatg agtaatcatt
     5881 agcgttgttt gctctcggct gagattatgc agagcggcta acacttgctg ttccgaatcc
     5941 atatcaaggc ttgcagtcgg ctcgtctaac agtaataatt cgtacgggcg aagcaacgct
     6001 cgtgcaatcg caatccgctg tgcttgcccg ccagagatac cgatattact gtcttgcact
     6061 tgatgctcca accctaaacg tgccacaaat tcatcggctt ttgaaagctg taatgccttg
     6121 gctaattcag aatctgtcgc attagggttg cctattaaaa tattctcttt caaactgcca
     6181 tgcattaatt gcggattttg ccccacccac gctaatttcg ctcgccattg gcttaaattt
     6241 aaatctcgca gttcggtgcc gttaatcgta accgaccctt cataaggcaa gaaaccaagt
     6301 aacatattca ttaatgaact ttttcctgca ccactttgcc caaccaaagc gatatgttgg
     6361 tgtgcattca actcgaaatt taacgcttgg gttaaggctt tgccttgtgg tgagaagatc
     6421 acgcaatctt tggcttgaat cacaagcggt tgattttcaa cattttcttg caaattgcca
     6481 ccttgcgttt tcaccttttc ttttaagaaa gtttcgatat tatctgcggc actaatcgct
     6541 gctgccttgt cgtgataaaa cacgccaagt tcacgcatcg gttggtaaaa ctcaggtgcc
     6601 accattagac aaaagaagcc gataaataag gtcacgcccg taccataata gccaaaatcc
     6661 agctcaccta aaaaaataaa gccaaaatag accgccgtca ccgcaatcga taccgccgtg
     6721 aaaaactcca ataccgcaga ggataaaaac gccattttta gtacgtccat cgtactgatt
     6781 cggaaatctt cggtgctttg gtagatttgt tcagtctgct tttccgcttg cccaaataag
     6841 cgaatggttt ctaaaccttt taatttatct aagaactgtc cgctaatacg ggaaagaatg
     6901 ccgatattac gctgatttgc ctccactgct ttcattccgg ctaaaatcat aaataaaggt
     6961 aataatggca ttgttgcaaa taaaatagcc cctgctgccc agttaatcgg gaatacaaaa
     7021 cagaggatca gtaatggcac tatcagcgat aaaaattgct gtggcaaata gcgtgcgtag
     7081 aaattatgta gattttccac ctgctcgagc attaaggttg cccagctgcc cgccggtttt
     7141 tgttgaatgc tcatcggccc gactgcttcc attttggcta gaatttggcg gcgaagatgt
     7201 aaacgcaagg tttgccctgc tttgaaaccg acacgctcac gcagaaaaat gaagaatgct
     7261 ctggcagcaa aacaacagaa taagagcata atttcaacca gaaagctatt cggtgactgc
     7321 tttccgataa gcattttgtc taacattgtg gcaatcagcc acatctgtcc aatcatacat
     7381 aaactactga aactccctaa cagtatgttt aagtgcatat attttttgat gactttttgc
     7441 tgacttttaa gccatttttg taattcgcgt tggcgttgtt tttccataat tttgtcaatt
     7501 tttttgtttt ttcaaccgct tgtaaatcgg gtttgccatt ctactataaa gcaaaaaggt
     7561 tgttaatggc gaaacattaa caacctttca ttcagcctta actagaatag ctcgtcaaat
     7621 tcaaagcgat acattaaatc taccgcttgg ttaatacttg agacccattg taagtacaat
     7681 cttggcgtta aattatagcg taaggttaat tcggtaagcg gtgcaaaaat gcccacgcca
     7741 tacttcactc tgaatttagg ggcaaggctg gcacttactt ctactttggt gttatcgcca
     7801 atacctgcgg tggtcacgct taaatctttg agtccgaaag tgctaccaac atcacccacc
     7861 aatttactgc tttttgataa gctcatactg agtaatgccg ctgcgactgc attactggag
     7921 ctggtatcgc cactgctttc caatgaacga ccagttaaaa tataggaaag tgcttcattt
     7981 tgcgacattg ccggatcaga gaatactttt accgttggat tgtctgccaa accggtcact
     8041 cttaccccag ctgtaatggt cggatcttcc attgcctccg gattgcgtat agcttcaata
     8101 tctaaggttg gctgagacgg tgagccggca aaactaatat cacctttacg aatcagcaag
     8161 tcttgaccat aagcggcaaa tcgtccttca cgcaaatgaa cttgcccgta aagccctaaa
     8221 ccttgtttgc cttgcctgac agacaataag ccattcacgt tactgtttaa accataggct
     8281 ttgagtttga catcattacc gatgttaatc ttaatatctg cattaattgc cattccacct
     8341 gaggtttgag ccggaatatt acgttggcta aacggcactt tatttttcac agagccgtcc
     8401 ataatcacct catctccact tacactgacc gcactttcag gtaactgctc gacttcaatt
     8461 cttgcccaag ggatatctac atttccactt aaggttaaaa gagttggcgt tgccgtcact
     8521 tgaatatccg ggctaactgc cacttttgcg atattaggaa tatccacttg gaaacggtta
     8581 gcttgagcgt gaacccgtgt tttccacgca tttagatctc gccagtctgc atcaccctcc
     8641 aaacgcagtt cgctttgttt ggtttgtaat ttaccgctta aagtcgatgt tgccccgtgg
     8701 aaattcattg ctaaattccc acctgtaata tcaaacggca ttgtaacaga gcgagctttt
     8761 aactctgtaa cgtttagatt tccgtgcaat aacggagagg ttgcggtgcc gctcacggta
     8821 agacgagcat tcacattgcc atcaaccgaa tcgccccgtt caagtagcgg tcgaatcagc
     8881 tttaagctta attggtcaag atgaatattg ccggataacg cacgagcctt acttaaatct
     8941 ttcatcacta aatcagtcga aagtctgccg ttattttcga cccttaaatc agatttaagg
     9001 gttaaattat tgtcagacat tttcagatca attttaagcg gtgaaacggt gagtgggaaa
     9061 ctttttcccc cctccatttt ttgaataaat ttaatcgcat tagaggttaa atccagattc
     9121 acttgaggct gtttgttttt aaaccaagct gcatcgcctt tggcattcac aatccctgaa
     9181 agctggctgt ttttctccaa aaattgttgc aataccgcta aatcaaagtt acggatttca
     9241 aaaggcactt taccctcaac accggcatta aatgcagtcg ggaaacaaag attaattttc
     9301 cggttatgcc aacaatgtgc ggaaatattg gcgttaatgg ctttattgtc atatttcaca
     9361 ttcactgctt tatctgcttg gaattgacca aactcggtgg attgaatcga aacttggctt
     9421 aattgccctt cccaaatttc tttcaaacgg tcaaattttc cagaaatttg caaatcagca
     9481 ccaaccggat tgccttttgc acttaatttc aagctatgat tttcttcatt tccttttagc
     9541 aataaagtgg catttcccac tttgatttca ttataggcaa attgacgtaa ccccaaggtt
     9601 aaatcccctt gaatggtttt ctcagtggta attttgcctt ttgcggttaa attttgcagt
     9661 ttaaattgct catagcctac atttgaggcc actaaatcta aatcaatgtt aggttctgaa
     9721 accttacccg ataatttggc attaccattc acgctggctt ttaaattcgg cactaaccct
     9781 tgcaaattag gggctttaat atccgcatag aaatcagatt tttcgcctaa cacgcctttt
     9841 aaatcgatct tattttcacc atacaccagc gataagcccg gaacatctaa aagttgttga
     9901 tgatcggctt ttaaattacc gcttaagtgt agatttttct gtaataacga acctttaata
     9961 tcaatattcg agacgtccgc tttccatccg ctagctgaat tgccccgtcc tgcataacct
    10021 tcggaagata aagaaccgga caataccgcc ggccagtctg ccagtaggga tttagtgtta
    10081 atatgctgaa gtttcaaatt tgaacgccac gcaacgccct cgctccaatc cactaaaccg
    10141 tcgatcttcg ccgtaccttc cagcgtattg agacttaaat cttgtatatt aaaatgggtt
    10201 aattcccctt tgccagttaa actagccgag cttgcaggca cgcccattcc tttggcactg
    10261 actttagcct ccaaagcgta atccaggaga ttgccattaa gcctcatggc gatattctct
    10321 aaactcagca catcaccatt ttgctgagga gcaaacggat aacgcattga ctcactcttc
    10381 agcgataaat caaagggagt tttcgcctga gccagtgcaa cattgccctc caacgaggcg
    10441 ctaattgcac cagccgtctt cacttttagg ctggttttgt catatagctc accggaaaga
    10501 gaggcttcaa tttgattgaa cggcaatttt actttcgccg tttttgcctc gtgaccactt
    10561 agcgtccaac ttagcggata attatcttgt aacgataaag aaccgcttgc ggttagatcc
    10621 ccttggtcgc ttttgaaatc taaacttttt aggttgatat gctgatcttt tgcttgagcc
    10681 tgaagctgta aagaggcaac atttaacaat gagatcggct caatcaaatt ccctttttca
    10741 tctttagctt tttgagcaat cgctacattc gcaatatcaa tctgttcaat attgagatca
    10801 agaggcaaac taaagcgaat atttttatcc aataacggct gtgctaattg tgctttaatc
    10861 gctgcccaat ccactttatt atccacctgt tcggcctgtg caacagtttt tctctgtaat
    10921 tggtgaaagc cctctacgac tttttcactg gttttttcca ccgcctcttg aatcacttta
    10981 tcagcaatct cttgtggatt tgtcgctgat aacgcctctg tttttgcatt tttttgtgca
    11041 aaatcgaccg cttgttcagt atcagtttcg tctaacttta aggctaaaag cagatttagc
    11101 ccctctaact gtgtcgggtg aacggtaata gcccgccctt taccagaaag tgcagtgtgg
    11161 aaatgattaa gatgaatatc catatcatca actttgacct tgatattctc taaattgata
    11221 ttttgagctg aaatccccaa tggcaaattt aattcggtga aaggttcggt ctcttctttt
    11281 ggctgagaag ggggtaattt agtcgtatca atcaacacct ctgtatcttt aaggctgaga
    11341 ttattcaaac acatttcata gtggagcaag cagctaaaac caatatgcag atctgcttgc
    11401 ccaaccgtta cattcacacc gtccatcaca aatcgggcat cagaaagctg taacccatct
    11461 tgcaggctac cttgcacttg cccaagttgt aatggctcta cgaatttatc tacccagctt
    11521 aacactttac gttgcccgta acctgtgcat agaaagagaa tggcgagtaa aagtagaata
    11581 aacgtcagac aaaagccgtg cttcaaaaac cgccactttg attttttagg ctgtgttgct
    11641 tgtggctctt gtgctgagtc cgtttgattt gtggctgttt gtttattttc gtcagtcata
    11701 atcgtgcata tttatgaggt gataaaaagt aaacaagcgg tatgcgaaat tttactgaaa
    11761 ttcgaccgct tgttttcatt tacagatcgg aacctaaacc aatataaatt tgtattcctt
    11821 tggaattatc tggtgatttt accggcgtgg cgacatcaaa tttaatcgcc ccgataggtg
    11881 atgcccaacg cacccctaag cccgtaccgt agtagagatc ctgagttttg aatttattcg
    11941 atgccaagcc tgcatcataa aaaattgcac cccaccaatt agggtaaacc tgatactgat
    12001 attctactgt gcctgtggct aaatgagagc ctccgacacg tttgccatta ctcggatcac
    12061 ggggggaaat atccttatag ccaaagcccc gcacactcat atcgccaccg gcaaaatagc
    12121 gtaacgccgg tggaatacgt tcaaattgat tggctttcaa ataccccaac tccgccctta
    12181 aatagaaccg atggttatca aagtaagttc tcgcccaaga tgtcgaggct ttataactat
    12241 aaaagtttac atctgaacct actgcacgac tcccccagtt taccgttaat ttttgtgtat
    12301 ccccccataa tgggtaaggc ttgccatctg ttctggttcg attcaatgat gccgttgggt
    12361 aaactaataa ggttttaaat cgatcattag cttgagtaaa agaatcgtaa cgggctttta
    12421 aaccaacaga aaatgaccaa ccggtttcgt gagtccagaa acgttgtaag ccaagggtgg
    12481 cagcggttga ttttgtatcg ttttgatctt cgttttctaa agtgccggat aattggtaat
    12541 aataatgtag cggatcttct ctaagtggaa tattataacc aaattcaaat gtctgctccg
    12601 gcttagaaac gtacgttcgg ctttcaatac tatgacctcg gctatttaac caaggtttct
    12661 tccagttaag ctgtaacctt gggccaactt cagtttcgta gcctatccca atttccactt
    12721 cattgcgttt tttaggctga aataacacat ttaaatccac taatttatcc tgttcattta
    12781 aatgtgactc aaccatcact gatgaaaacc aattactgga aaggtaatct tgggttaaaa
    12841 tcgaaagatc gttagctaaa tatggctcac cggaatgaat tttaagaata ttttgcaaat
    12901 attcttcttt gatttggcta tcaacaaacc ggatttgtcc ataatggtat cgttttccgc
    12961 tatcatagcc taaacgccaa tccgctttat gatcggtcgg ataaacttcc aaacggtgat
    13021 aaagccaatg accgtcaaaa taccctttac taaaagcggt actttcaata tcacctttaa
    13081 aattatcata ggttttatgg tttaaacgac taccttgttt tggggcttta ctgactagat
    13141 gagcgaaatc ttcgtccgtt tttgcatcgc cttgcaaaac aatatcggtt tcatcaattt
    13201 ttaccgtctc tttatctagc tcaacattta atactaagag cggtttcttt ccctcttgag
    13261 gtagctgcac aaattggtat cggctattat aatagcccaa ggctctcaga gctttatcta
    13321 ctgtggtttg caccaaatat tgataacgct ctgaaccatc tgcatattca ttggcaattt
    13381 gatctaaata tagctccaca tttttcttgg catctttacc ctgaatgcct ttgacttcta
    13441 aagtgactaa tggctctatt tctggctcat catcactatc ttccgctaat ttttcttgca
    13501 gattttcaac tcgctcacga tctacgtcag acagcctttg ctcttgattt gcttgtgcca
    13561 ttgaagcaaa agccactaaa cagcagaatg ttaaaaaatg tagttttgta ttcattagta
    13621 acctttttat tcttttggaa tgccacgcaa aagcggaata ctgtcataag gcggaacaga
    13681 acttaacgct ggctcttgct caaagagcat aatgaatggt ttgtcaggca ctgttttttc
    13741 attacgccac aagtttccaa cactcaccaa ttcaatatct tgaggtagtt gtgctaaatt
    13801 ttgcttcagt acactaatcg tattcttgcg agggtgtcct atcaccaccg ctaccccgtt
    13861 ttttcgtgcg tgattaattg catgtgcaaa ctgtttttgt acatcagcaa gcagatcgct
    13921 atcatctaaa aaaatgtctc tctccagcgt attaatacca aattgacgag ccgttttagc
    13981 cgccacacta ctgccaatag ttttactgtc taaaaagaaa agcgtatttt cttttaacac
    14041 tttcaacaaa tgttgcattg tagcagagtc tgaagttgct ccactgccca tatggttatt
    14101 taaaccaata gcatatggta cttgaccacg agaagtatga ataagtttcc gaattttctc
    14161 ttcgttatca ccaatatgaa tacccccctc ttcaattggc tgtttcgatt taggttccat
    14221 tggcaaatga atcaaaatat cccgtttttg gttataagcg tcctttgccc gttctgttgc
    14281 atagggtgca acaggaataa tcgccacgct taccgccttg ggtaaggcta agatttctcg
    14341 atcttctttt attcgatagc ccacatcatc aattacaatc gccatttgag ctgcttgtac
    14401 aagcggtgta aaaagcacaa acatttgcaa aaaaatgtta aaattcaacc gcttgttaat
    14461 ttgtttaaac atctatttca ccaaatttag aggattaatc ggcgtgcctt tacgggtaac
    14521 accaaaatag agtgcagaac ggctttgtcc cccactgtta ccaaccttcg caataacctg
    14581 tccgccttgc actcggctac ccttgctgac tgaaatagat tggttatagc cataaaggga
    14641 aatatcacca ttgccgtggt caatcgcaac catattgcca taccctgcaa gccattgagc
    14701 cattatgact cgcccgctcg ccattgctct aaccgaagta ccggcagaag caccaatcac
    14761 tacaccgtgc caattattac caaaaggagt gataatattg ccagacaccg gcatcgtata
    14821 tcgaccagcc ttgatcggtg ttctctcaac attctcagtt gttttggact gaccggattt
    14881 tgcctgtttt tcccgctgtt gttcacgttt ttctgcttgc tgagcctctc tttgcgcttg
    14941 ttctaattgt tgttttagtg cctgttcatt gctgcgtaaa ttctctaatc ggctttgatc
    15001 ctgctcaagc gttttatcga ttaaacgtaa ggtactttca cgctggcttt gtactttctt
    15061 taaatctttc tcttgtttct tttgttcatt aagttgcgtt tgatgatctt tttgctggcc
    15121 tttcaattca tcacgtctgg ctttaagatc agcttgggtt ttacgaattt caacgatcgc
    15181 atcaatgcga atattattca tatgctgata ataagcggtc attctttccg cattttttgc
    15241 ctcttcagac attaaacgct ctaagaccga agggttcacc ccagaacggt aggcagagtc
    15301 caactgctct tttaattttt ctttctgctg tttttccaac ttttctaaac gggcaatttc
    15361 agtctcagtc gctttaatgg tctggcgaac ttccgttaaa gacatttcgg ttttttgtaa
    15421 tttatccaac accttcccca tttctacttc ttggtttttt agggtagatt gcaacgcatt
    15481 acgtttttgc ttttgttcat taatttttga ggtttgctgt tggatttttt gctgaatctg
    15541 attaagatta tttgcaaaag aaaaaggggt agaaaagctt attaccccac tgaaaatagc
    15601 agtccaacag taagaattta ttcgtttcac cagcatacct ttgtttcttc aaaatattat
    15661 taaggttata ttctaatcgg ttatttgctt aagatcagct ttttagtgaa agaatttaac
    15721 tatctatttc aaaatataaa gaattttgct ataaatagca caatttcaaa tccattaatt
    15781 ttactcaaag ctaaggagtc attatgcaat tagtatttat ccgtcacggt ttcagtgaat
    15841 ggaatgctaa aaacttattt accggttggc gtgatgttaa tttaacagaa cgtgggattg
    15901 aagaagcaaa atctgccggt caaaaattaa aagcagccgg ttttgaattt gatattgcgt
    15961 ttacttcggt tttaacccgt gcgatcaaaa cttgtaacat cgtattagaa gaatcagacc
    16021 aattatggat ccctcaagtg aaaaactggc gtttaaacga gcgtcactac ggtgcattac
    16081 aaggtttaga caaaaaagaa actgctgaaa aatatggtga tgaacaggtt cacatctggc
    16141 gtcgttctta tgacatctct ccaccggatt tagacccaca ggatccaaac tcagcacata
    16201 acgaccgccg ttatgctaac ttaccaaaag atttaattcc aaatgcagaa aacctcaaaa
    16261 tcacccttga gcgtgtgtta ccattctggg aagatcatat tgcacctgca ttaatttcag
    16321 gtaaacgcgt attagttact gctcacggta actcattacg tgcattagca aaacacatcg
    16381 aaggcatttc tgatgcagac attatggact tagaaatccc aaccggtcag ccattagtgt
    16441 atgaactaga tgacaactta aaagtaatca gcaaacgtta cttataattg gtaaatttcc
    16501 gataaaaaat aaccgcttgt agtgcaacac attacaagcg gttatttttt gttaattttt
    16561 tgcaaatggc aaagaacaaa aataaaggcg aatcatacat tcgccttatt gttttaaagt
    16621 agattagaaa tctaacaact ctttctcttt tgctgctaat acttcatcaa cttttttaat
    16681 gaaggtatcg gtgatttttt gaatatcttc ttcagctttg tgttgttcgt tttcgctgat
    16741 ttctttatct tttaataacg ctttgatttg gtcattagca tcacgacgaa cattacgaat
    16801 tgccactttg ccttgctcac cttctgcttt aacgattttg attaaatcac gacgacgttc
    16861 ttccgttaat ggtggaagcg gaacacgaat ggttgtgccg gcagaagatg ggtttaaacc
    16921 taaatctgag gttaaaattg ctttttctac cgcagagatt aaagatttat caaatacgtt
    16981 taccgctaaa gtacgggcat cttcagctac cacgttcgct acttgacgta atggagtcgc
    17041 agagccgtaa tattccactt gaataccgtc taataaagaa ggttgggcac gacctgtacg
    17101 aattttcgca atatgccctt ttaaagcctc aaggcttttt tccatacgat cttgggtatc
    17161 tttcttgatt tcgttaatca ttgatttttt atccttttat ttagtaactg agagttaaac
    17221 agagaaaatt aattattcag aaatggttgt accttcttca gtaccgaata ccacattgcg
    17281 taacgccccc ggtttgccca tattaaagac acgaattggc attccgtggt cacgagcaag
    17341 cgtgaatgct gctaagtcca ttacttgtaa ttcttgctca ataacttgcg catacgttaa
    17401 tttattatat agttttgcat ctgcgtattt tgctgggtct ttatcataaa cgccatcaac
    17461 tttagttgct tttaatacca catcagcttc aatttcaata ccacgcaagc aagcagctga
    17521 atcggtggta aagaacgggc tacctgtacc ggcagagaaa atcaccacac gtttttcacg
    17581 caacatttta attgcttcag accagttgta agtgtcgcaa atcccattta attggaacgc
    17641 agacattaat ttagcattta cctctgcacg gtgtaaggca tcacgcatag ccaaaccgtt
    17701 cattacggtg gcaagcatac ccatatggtc gcccactaca cggttcattc ctgctttggc
    17761 taattttgca ccacggaata agttaccgcc gccaagtacc acaccaacct caacgccttc
    17821 agcaagtaat tctttaatct ctaacgccat acgatccaaa atagacgggt cgataccaaa
    17881 accttcactg ccttgtaggg cttcaccact taatttgaga agaattcgct tataaatagg
    17941 tttgctcatt ttaattgcct cttaactgta tggactaaac acaaaattac gttattatag
    18001 aacaatccaa tataacgata aactaaaaat attcactaca atgaaatcca aacaactttt
    18061 cggcattctt gtcgctattt cgctggcaac tgctgctagc tgtttaatgc taatcggatc
    18121 aggctttttt ccaaatccga gtatctttga agtcattttg ggcgtattcc tcatcatcgc
    18181 tcttgccagc tctaaatgga cttattattt actcttactg ccaatcagca tcgcttatgc
    18241 aatttatacc ccggttggga taaaattcgg taaaccgact tacgagtata tcgcctctat
    18301 ttttgctacc gatatgatgg aaagcaaaga gtttattgct caactgccga ttttaaatat
    18361 tgcggcgggc attgcgattg tactagcggt cattttttat cgaaaaatta ccaatcgcta
    18421 tcaaatccgt tttttacgca ataaaacatt cgtgatttcg gcttttgtat taatgctgtt
    18481 ttcccttgca ccgtttaaat tttttcagga gttctacaat tcgagcctaa aggtaaagaa
    18541 agaattggaa gtgctgaaca atttaacgct agattcacaa tggggacaat caaccctcag
    18601 ctcaacttca aactacgatg attatgtact gattatgggc gaaagtgcga gaaaggatta
    18661 tcaccacgcc tatggctatc cggctgccaa tacgcctttt atgagttcgg caaaaggaac
    18721 cttgattgac ggtttaacct ccggtggcac aaacactatc gcctcattac gcttaatgct
    18781 cactaagccc gatacggaaa aatgggaagc aaattatggg ttaaccttaa ttgatttaat
    18841 caaatctacc ggtatcaaga cctattggat ctcaaatcaa ggctatttgg gcaattacga
    18901 tacgccgatt tcctctatcg gtaataaaag tgatgtcaaa attttcacta aagccggcga
    18961 ttcattaaat accaatgtga gcgattttga attgttaccg cattttgcta aagtgattga
    19021 agaacctgct caagggaagc gtttcatctt tctgcattta tatggctcgc atcctattac
    19081 ctgcgatcgt ctcaccgatt acccgaaaat gtttgacgat gacaaactgc caaaacgcta
    19141 ctttaatgta aattgctacg tgtcatctat caagaaaacc gatgaattgc tgaaacgggt
    19201 atatgatttg ctagtgaaaa accaagaaaa tcaccagcgt tcattctcaa tggtttattt
    19261 gtctgatcac ggtttatcgc acgaggtttc aaaagagaac attgttatcc acaatggaaa
    19321 ggatagaagt aaattacact acgatattcc gctgtttaaa atttcaagcg atgataccca
    19381 acgtaatgag tataaagcct ttaaatccgg cttaaacttc actaatggta ttgcgaattg
    19441 gattggtatc gaaaatccgt tattagataa agaaattaat ctttttaacg aacaaaacga
    19501 taaaagtgat tatgggctaa agaaaatcat tgaaacgcag tctactgtag aagatccagc
    19561 tgttcctatt cctgaaagct acttatataa agcgactaat tagcaaaagt aagtaacaaa
    19621 aaagcaggct ttaagcctgc ttttttagtt tttagtatca gaaaaattaa gcgttaccgc
    19681 cagtgatttt cgctacttct gctgcgaaat cttcttctac tttctcaata ccttcaccta
    19741 cttctaaacg aataaagtta gaaactgaag tatttactga ttttaaatat tgacctacag
    19801 attgagatgg atccattaca aacggctgac cggttaatga aacttcaccg gtgaatttag
    19861 ccatacggcc ttcaaccatt ttttctgcga tttcttttgg tttaccagaa ttcatcgcaa
    19921 tttcaatttg aatttcacgt tcttttgcta ctacatcagc agaaacatct tctgggttta
    19981 caaattcagg tttgcttgca gcaacgtgca ttgctacttt cttaagctca tcttcagagc
    20041 ctgcacctgc tactaataca ccaattttcg caccgtgtaa gtattgagca ataacttcgc
    20101 cttctaagta ttgaacacgg cgaatgttca tattctcacc gattttcgca actaatgccg
    20161 cacgtttttc ttcaaattgt gcttgtaatg cttcgatagt tgtaccttta tttgcaactg
    20221 caaaatcagc aacttcgttc gctaattcta agaaaccggc atcttttgca acgaagtcag
    20281 tttcacagtt catttcaact aatacgccaa aacctgaagc gacacgagca aggattacac
    20341 cttcagctgc aacacgacct gcttttttag ccgctttcgc ttgaccggat ttacgcatat
    20401 tatcgattgc taattcaata tcaccgttcg cttcaactaa tgctttttta cattccatca
    20461 tacctgcgcc ggtacgttca cgaagttctt taactaatga tgctgtgatt tcagccattt
    20521 taaattcccc ttatttgata tggtaaaaca ggctctcacc tgcctagaaa tttcattgtt
    20581 tagggcaggt taaaacctgc cccctcaact gaattattcc gcagaagctt cttctgctac
    20641 ttcaacagtt tcaacaccgc gaccttcttt gattgcagca actgctgaat ctaagtaaag
    20701 ttggatagca cgtgttgcat catcgttacc gggaatgatg tagttaacgc catctggagt
    20761 tgagttagta tcaacaatcg caaataccgg aatacctaag ttgtttgctt ctttaattgc
    20821 gatatgttcg tgatcagcac cgataacaaa aattgcatcc ggtaaaccgt tcatatcttt
    20881 gataccgcct aagcttaact ctaatttttc taactcacga gtacgcatta acgcttcttt
    20941 tttagtgatt ttgtcaaaag taccgtcttg agtttgagtt tctaaatctt ttaagcgttt
    21001 gattgattga cgaactgttt tccagttagt caacatacca cctaaccaac ggtggtttac
    21061 gtagaattgt tggctctcta ctgccgctgc tttaacagca tcacttgctg cacgttttgt
    21121 accaacaaat aatactttac cattgttact agcaatgcga gttaattccg ctaatgcttc
    21181 gttgaataaa ggtaaagttt tttctaagtt gattacgtga acaccattac gagcaccaaa
    21241 gatgaatggt ttcatttttg ggttccagta acgtgtttgg tgaccatagt gaacgcctgc
    21301 gttaagcata tcgcgcatag aaacttgtgc cataagaatt ttccttcaaa gttgtttgtt
    21361 ttgccactta tgaacggcaa aacggggttt agcctccaca tatcctagaa aatcaatctg
    21421 ttaaagacac cccaattcct agcttgtgat atgtgtgtgt tttagtgtta aaaaataaat
    21481 gtgtacgttt tgcctgaata gacaaaaacg gggcgtatta tgccaaaaaa caaacaattt
    21541 gccaattatt ttattgctct cttcgcatta ctaaatcaag ctcaaaaata aaaaccgttc
    21601 tcattattga ctaaaaaaat ggggaggttt agaatgtctt tcattctgtt atgaaaacct
    21661 gtctgaagga gactatcatg aaaaaaacac tttctgcact tgctattgct gcagccactt
    21721 ttacatcaac ttcaacgctt gctgcaaatg aagtgaatgt ttattcttac cgccagcctt
    21781 acttaattga gccaatgcta aaaaactttg aaaaagatac tggcattaaa gtaaacatca
    21841 tcttcgctga taaagggttg gttgatcgtg taaaacaaga aggtgaatta agtcctgctg
    21901 atgtgctttt aacagtagat atttcacgcg taatggaaat tgttaacgct gatcttgcac
    21961 aaaaaattga ctctaaagtg ttagaaaaaa atattcctgc acaattccgt gactctaacg
    22021 accaatggtt tggtttaacc acacgtgctc gtgttatcta cacgtcaaaa gatcgtgtag
    22081 gtaaattacc agcaggcttt gactacctag atttagctaa accagagtat aaaggtaaag
    22141 tctgcgtgcg ttcaggcaaa aactcttaca atgtctcact attcgcggcg atgatcgaac
    22201 attacggcat tgaaaaaacc aaagcattct tagaaggctt aaaagcgaac ttagcacgaa
    22261 aaccacaagg tggtgaccgt gatcaagtaa aagcaattaa agaaggcatc tgtgattact
    22321 ctatcggtaa cagctactac tacggcaaaa tgttagatga tgagaaacaa aaatcgtggg
    22381 ctgaagcagc gattattaat ttcccgagtg gtgaacacgg cacgcacaaa aacatcagcg
    22441 gcgtagttat tgcaaaacac tcaccaaata aagcaaacgc ggtgaaatta attgaatacc
    22501 taagtggcga aaaagcacaa ggtttatatg ctgaacttaa ccacgaatat ccagtaaaag
    22561 aaggcatcga gccatcagca atcgtaaaag gttggggtac gttcaaatca gataccatca
    22621 aacttgaaga tatcgcaaaa aattacgaag ccgcattaaa attagttgat gaagtgaaat
    22681 ttgacgattt ctctgagaaa aaataatcaa ccgataagcg gtcatttttc cacaaaaatt
    22741 tgcaaaattt tgttaaaata caaccgcttg caaaaggacg cattttgcgt ccttttattt
    22801 ttttatgaaa taacaggctt aaagaaaaat gcgatcacaa ttttgctgga aaagtattgc
    22861 tgccctaaca acttttatcg ttttgcttcc tcttattgca atttgctatc acgcattgca
    22921 aggggataat gaaaaccttg ctcacctttg gcaaacaatg ttgccaatct atcttaaaaa
    22981 ctcaacttta ttagtattag gaaccgtttt ccttgcactg atttttgctc tgcctaccgc
    23041 ttggattgtg gcaaattacc gtttttgggg gcaaagaacc ttacaatggt tactttgttt
    23101 gcctctcgct atgcctgctt atttaattgc ctatttatat accgatttat tagattactc
    23161 aggtgctttt caaggctggc tgcgtagtat ttttggctgg actcatccgc aagattactg
    23221 gtttcctcaa attcgtacat tgtatggtgc ttgctttgtg cttgcgttag tactatatcc
    23281 atacattttt ttattagtgc gagttgcctt attagaacaa tctgaaaact taacacacag
    23341 tgcaaaaatg ctcggggctt cgccctctca gttgttccgt cgaattacgc tgccattaat
    23401 tcgaccttct gttgccgtag gcattgcatt agtggcaatg gaaacgcttg gcgatttcgg
    23461 tactgtggcc tattttgccg tgccaacact tactacggca atttatgatt cgtggctagg
    23521 ctatcacgat cttggtactg ccagccagat tgcgatcttt atgttgctaa tgattttcct
    23581 gtttttaagt ttagagcaat atagtcgccg taaacaaaaa agctatcaac gtggctatga
    23641 aaagaaatca gcctttaaat ttttaactgg ttggaaatta gcattagccc ttgcttggtg
    23701 ctggggttta ttggcgttag cctttttcat tccgtttggc aggttgctct attgggcata
    23761 cgactatttc gagcaagcgt ggaatttaga ctttgtccaa ttttcgctta atagtttgaa
    23821 agtatcgatc atcgcctccg tgataacggt actgattgct ctacttctgc atttttctaa
    23881 acgtttgaat acccgcaaaa ttttagtcaa aaatgaccgc ttgtcattac aacttgcctc
    23941 actgggctat gcggttcctg gcacagtatt agcgatcggt ttactttcgc ctttaacatt
    24001 tgccgatcat caactccatg cttggctaaa aagccttgaa ttatcacccg ttggattgat
    24061 tttttcaggc tcactctttg cattagtatt agcttatacc atccgatttt tagcaatggc
    24121 aattggcagc cttgaaactt cgctaaataa aatctctcca tcgctggata tggcgagcca
    24181 aacgcttggt aaaaatggct cagcaatgtt agtaaaaatt catatccctt taatttataa
    24241 aggtatttta actgcaggat taatggtctt tattgagagt atgaaagagc taaatgcttc
    24301 tctgctactt cgcccattta attttgatac actcgcaacc tatgtgttta cctttacatc
    24361 agacgagcag cttgagcgtg ctgctctgcc tgccatcgta ttggtgttag tcggtttact
    24421 gcctgttatt tggcttacca gatcccttat ttcgcaatct gaaaaagaaa gataaaggaa
    24481 ttttatgtct gttttaacta ttaatcatct caacctcaat ttcggcagta caaaggtttt
    24541 acaaaatctc catcttgctg tgaatcaaaa tgaaattatc tgtttgctag gtgcaagtgg
    24601 ctgtgggaaa actacactgc tcaaagccat tgcaggttta ttgccaattg agcagggaga
    24661 tattcattta gcgggtgaat gcctaaaaag taaagccgtg gaagagcgac aaatcgggct
    24721 gattttccaa gattacgctc tttttccaca cttgacggta gccgataata ttcaatttgg
    24781 cttatccaaa ttgccaaaag tacaacaaaa agcaattacc gaaaaaatgc tttcagttgt
    24841 gcatttacaa ggctttgaaa gccgttttcc acacgaactt tcgggcgggc aacaacagcg
    24901 tgtcgctatt gcccgagcat tagcctgcca gccagaattg ctactgttag atgagccgtt
    24961 ttccaatatt gacagccaaa ctcgctatgc aatgattcaa gagatcaagc aaatcttaaa
    25021 aagccaaaat gtgcccgcta tttttgtaac ccatagcaaa gaagaagcct ttgcatttgc
    25081 cgataaaatt gccgtgatgg atcaagggaa aattattcaa tttggtaagc caaacgagct
    25141 ataccattct ccagttaatc catttgtggc agatttttta ggtggcacaa actatcttaa
    25201 ctgtaatgta acggaagaca acgtgttatg cagccctatt ggcgagttcc gactcttccc
    25261 tgaaatgaac gttcagaaag ggcgttaccg ttggcttctt cgcccagaac agattatctt
    25321 aaaacccaat gagctaggtt taggtaaagt ggtaggcaaa ctgtttttag gcctatacta
    25381 ccgctatcag gttgaaatta aaggcattga gatagtaact taccaatctc aagagctgaa
    25441 aattggcgaa caagtggaag tgggcttcca agtaagagag tttatcctat tttaaggaga
    25501 atatatgaaa attgaagttt ggtcagatta tgcctgcccg ttttgttaca tcggcaaacg
    25561 ccacttagag caagccctag cccaatttga aggcgaggtt gaagtggttt tccgagcctt
    25621 tgagcttgat ccgcacgcta acggcgaacc ggagggcgat attcagcaac gcctaatgcg
    25681 gaaatatcaa aaaaccgcag aacaagctga tgaaatgatt cgttatgtgg aacaagccgg
    25741 caaacaagct gggctagatt tgcgttaccg caccacccaa tacactcgca cctttgaagc
    25801 tcatcgcttg gcgaaatttg cagaaagtaa agacttaggc gaagcaatgg ttgaacgttt
    25861 attcaaagcc tattttaccg ataacactat tctagctaaa cgcacagagc ttatcagttt
    25921 agccttagac attggcttag agcgtgatga aatcgctcaa ctgctcacag gtgatgattt
    25981 cgggcacgaa gtccgtgaag atgagcgagt cgctcacaaa tatggcattc acagcgtacc
    26041 gttttttgtg atcaatgaaa aactcggggt atccggggct caaccgccag aaatattact
    26101 tgacgctatc aaacaggcat tgcaaaaata atccgaaaaa agaccgcttg ttaagctaaa
    26161 caagcagtct tattcttctt ataatttaca atttattttt tggtgatcgc acctaaaata
    26221 ccacgcataa tttgtttggt gacttggttg cgtaaatttc tgccaactga atgcgccact
    26281 tggctaacca cttgttcggt aatcgattga tcttttttct tcttcgagcc aaaaatggaa
    26341 gagagaatac cgccaaagaa gtcattgttt gcttcttctg ccgcagcctg ctctgcttta
    26401 attgcttctg ctttcgcatt aagtaattca aacgcagatt cattatcgac atattggctg
    26461 tagtgatgat agagatcatc ttgcttcact aaactatcac gttcgcctgt ggctaatgga
    26521 gctaattggc tttttggtgg atagatatag gcaatttcta caggcgttgg catacctttt
    26581 tcatctagca ccgaaaccaa cgcttgcccc acaccaagtt gcgtgatggc ttctaccaca
    26641 tttacctctt tattcgctcg gaaagtttcc gctgctgatt ttaccgcttt ttgatcacgt
    26701 ggcgtgaaag cacgcaaagc gtgttggata cgattgccaa gctgccctaa tactgaatca
    26761 ggtatgtcca acggattttg cgtaacaaaa taaacaccca ccccttttga gcgaattaaa
    26821 cgaaccacct gttcaatttt atccaccaat gccttagggg catcgtcaaa caataaatga
    26881 gcttcatcaa agaataaaac aaacgtcggt ttttctgggt cgccaacttc tggcaaattc
    26941 tcaaagagct ctgccataaa ccaaagcagg aatgcactgt acactcttgg tgagttaatt
    27001 aatttttctg cattcaacat attgattaca ccacgcccat tacgggtttg gatccaatcg
    27061 tgcaaatcta atgcaggctc accaaataaa ttatctgccc cttcattttc aagccttaat
    27121 aacgcacgct gaatagctcc aacgcttgct gcagaaatat gcccatattc cagttggaat
    27181 tctttcgcat tatctgcgac aaatttaagc aacgcacgca aatcttttaa atcaattagc
    27241 aataaacctc tgtcatctgc cacacgaaaa acgagattta acaagcctcc ttgggtatcg
    27301 tttaaattga gtaaacgaga aagtaacatc ggtcccattt cggaaatagt gattcgaagt
    27361 gggatacctg atgtaccaaa tacgtcccaa aacgaaactg gatagccctt taagtaatct
    27421 tctcccccta aattaaactg taaaatgcgt tctgcaattt ttcctgaaaa attacccgct
    27481 tgtaccgagc ccgaaagatc accttttaca tctactaaaa atactggcac gccatcatca
    27541 ctcaaagatt ctgccaattt gcgtaaagta accgttttac ctgtacccgt agccccagca
    27601 attaaaccgt gccgatttgc cattttggca ttaagcgaaa taactttgcc tgtttctgtt
    27661 cgagcaattt gatacaaact catctttcat tctcttaaag gtaaattaat tttttgttct
    27721 catcatataa aaatttatca cttaattacg gctattcttt ttcgtttttg ccaagaacgt
    27781 ttttttactt cttgagcggt tcactttcgg taaagtcagt aaggattcct tgtcgtattg
    27841 actcacagga atctgatgcc caatatactc ttcaattgca ggcaaattaa ccgcataacg
    27901 ctcgcaagca aaactaattg aatggccgct ctcccctgct cgccccgttc taccaatacg
    27961 atgaacgtaa tcttctttat catcaggcag atcataattg aaaacgtgcg tgacatctgg
    28021 aatatgcaat ccacgagccg caacatctgt taccactaaa atatccaaat tgcctttggt
    28081 gaaattatcc agcaaagaaa ggcgtttttt ctgcggaata tcgccggtta gcattccaac
    28141 ccgatgtccg tctgccgata aatactgcca gatctcttcg catttatgct tggtgttggc
    28201 aaaaatcata caacgctccg gccactcttc ctcaagcaat gtcagcaaca atgccatttt
    28261 gtcttcattc gaggggtaaa atagctcttc tttaatacga tgtccggttt tttgtagtgg
    28321 ctcaatttca atatattccg cattatccat atcttcatag gcaagttccc gcacttttgc
    28381 cgaaagcgtt gccgaaaaga gcaaagttaa acgttctgaa ggcttaggtg cttttcgcat
    28441 taaataacgg atatctttaa taaaaccaag atcaaacatt cgatctgctt catctagcac
    28501 aatcacttga attttgtcta aattgataat gccttgtttt acatagtcaa tcactcgacc
    28561 tgttgtaccg acaagaatat ctaccccttt ttcaatttct tgaacttgtt tgtcgtaacc
    28621 atcaccaccg tatgccaaag ctagttttaa atcagaatgt tttaaaaaca gctcggcatc
    28681 tgccccaatt tgaaccgcca attcacgggt tggagcaaga attaatgctc tcggctgatt
    28741 ttttgacgtt tcgatttcgt tattcaataa atggttaaaa gttgcaatca aaaaggcaag
    28801 cgttttccct gtacctgttt gagcttgccc tgcaatatct ttgcctttca gcgtaatcgg
    28861 aaaggttttt gcctgaatcg gcgtacaaaa ttcaaagcct ttgctatcaa gggcatttag
    28921 tacattagcg tgaatcggga agtcaataaa gcggtgttcg gtaagatgat tagacatagt
    28981 atttccttga taattgtgat gtgacaagcg gtctttttta cacatttttt tgcaaaatag
    29041 catattgggc gttttttctc aaatttaacc gcttttgagt ttattcggca aaatagattg
    29101 gaaaagctct cggcttttca gcggttgtga ccctaaatag ggctttagtg ccattcgggt
    29161 aaaacgtttc gctgcttgtt gagtactttt ttctgaaaaa tccaactgag caaacgctaa
    29221 taaatcactg cctaaaaagc tctggttatt ctgtaataat gaggcgataa agccctgatt
    29281 ttcctgaaat tgataggtca ttttcggatc aactggcaaa ccggttgccg cacagtgcgt
    29341 aaaatccacc ccataaccca atgcttttaa cgtatgaaat tcaaaggtgc gtaaaatcgg
    29401 ctcaatctgt ttttgtgtgg caagctcggt aatgcaacgt aaataatgct gaaataattc
    29461 agggtaagcg gtctgatttt ccaatactct tgcaagtacc tcgttgatat aaaacccact
    29521 ataaagtgaa agcgtttcca tcggcaacgt taatgcagcc ggttctgctt tggttaaagt
    29581 tttcagatcc cctttacccg accaacgcaa caacaacggc gtgaacggct gtaaaaccgc
    29641 tttcaacggc gagcgagccc gccttgcacc tttagcaagt aaagtaatcc gcccgtgatg
    29701 ttcggtaaaa aactccacta ataaactgtt ttcgctgtat tcacgccgat gaaggacaaa
    29761 ggctcgttgc cattggtcta ttgtcataat ttcttgttaa ttatgaggtt gtaatttact
    29821 tctgccaaat ctccccctcc cctctttgct aaagagggga gatcttgcag agtatatttt
    29881 aaagtcattt tcactattta accttttata tagataggaa gatgaattta aaatttctgg
    29941 agaactagtc cccctcttta gaaaagaggg gttaggggag atttgattac gatattaatg
    30001 ctataacggg agccaactac tcgtccatat accctaaact tctcaatgct ctttcatcat
    30061 ccgcccaacc agcttttact ttcacccaaa gctcaaggtg cacttggttg tcaaataggc
    30121 gttccatatc ttttcgagct tcaatgccga tggttttgat tttttgcccc cccgcaccaa
    30181 taaccatttt tttctgacca tctcgttcta ctaaaatcaa gccattgatt tcatacaccc
    30241 cacgctcatt cattttaaat tgttcgattt ctaccgttac cgaataaggt aactcttcac
    30301 ctgtaaaacg cattagtttt tcacgaataa tttctgatgc cataaagcgt tgagagcggt
    30361 ctgtcacata ctcttcagga aagtggtgct caccttgacg cagtgattga cggacaaatt
    30421 tctgtaaaat atgcacattt ttaccccgtt gtgccgaaat tggcagaatt tcagcaaaat
    30481 caaatttttg tgaaagctcg gtaatatgcg gcagaagttc ttctttttcc ttgatgttat
    30541 caattttatt gattgccaat aaaacagggg cttttgccga acgcaatttg tttaacacca
    30601 tttcatcatc ttctgtccat tttgtgcctt ccacaacaaa gatgatgaga tctacatcgc
    30661 caatagcaga acttgctgca cggttcatta aacgattaat cgcacgtttt tcttctatgt
    30721 gtaagcctgg ggtatctaca taaatcgctt ggtattgatc ttcagtgtga ataccaacaa
    30781 tacgatggcg agtcgtttga gctttgcgtg aggtaatgga aattttttgt cctaaaatct
    30841 tatttaataa tgttgatttc cctacatttg ggcgaccaac aatcgcaata aaaccacaat
    30901 aggtttttgc aggagtttga atttgttctg tcattttgtt ttcctttcat tctgtggaat
    30961 gaatttgatg gtgcaagcgt ccacgcttgt accatttaat taaatcttta gcacaagcga
    31021 ggacgcttgc gctatcttac tttttcgttt taaccaccgc taacgctttt tctgcggcat
    31081 tttgttcggc ttttcggcgg ctggtgccaa tgccgataaa cacttcctcg acgttaatca
    31141 ctttacaggt tacacggaaa gtttggttat gagcttcgcc tttaatatct aatacatcat
    31201 attcaggcaa tggcaatttt ctaccttgta aaaactcttg caggcgggtt tttggatctt
    31261 tttgtgaatc gcctggactg atatctttaa gcaaatctga ataccaatct tccacctttt
    31321 ccattgcttt tgccatatct tgatcgagat aaatggccgc aataatcgct tcaacacagt
    31381 ccgataaaat cgattctcgg cgaaaaccac cactttttag ctctcctgga cctaatttta
    31441 ggtagtcgcc taaatcaaat ttgcgagcaa taatcgctag agtttgctca cgcacaagag
    31501 ttgctctcat acggctaagc tcaccttcat tcgcttttgg aaatttgtcg tataatactt
    31561 taccaatagt aaaatttaaa attgaatcgc ctagaaattc aagacgctca ttgtttttgg
    31621 ttgccgcact gcggtgtgtt aaggcctgaa tgaggtaatc aaggttatga aattgataac
    31681 ctaatttttt ctgtaatcgt tctagttgca tagtttatgt gaataaaggg gcgtatctca
    31741 tacgcccctg ttaagattaa ttgattgagg taaacattct agaaaaacga agccccgttg
    31801 ggaattcatt tgctttttta tctaaactta accaaataaa agtggcttta ccaacgatgt
    31861 ttctctcagg cacaaagccc cagaaacgac tgtcttcact gttatcacgg ttatcaccca
    31921 tcacaaaata gtatccttgt ggcacaaccc attcaccttc tgcttgccct tcttgttggt
    31981 agaaataagg tgcatagtta aatgccattg ggtgatttaa aatttgatga gttacattac
    32041 ctttttcagt gcgttctacc tgcatttcac cgtgatagaa aaactcagga tttggcttgc
    32101 cttcgctgta ttcaaatacc tttgtttcgc cattggcttt agtaaccgtt aattgctgag
    32161 ttgcaaaatc atatttaatt ttatcaccac ctactgccac cacacgctta atataatcaa
    32221 cgtgtggttg tgccggtgct ttgaatacaa tcacatcgcc tcgttctggt ttgcccgttt
    32281 caatcaaggt gttttgccag ataggatctt taatgccgta gctgaattta tttacgacta
    32341 aaaaatcgcc tacacgcaag gttggctcca ttgaaccact tggaatttga aacggttcaa
    32401 ataagaacga gcgaagtact gtaacaaaga ataaaatgcc gaaaagtgag gcaaaaaatt
    32461 cgcctactgc ggatttaggt tgaatttccg ctatttcttc agcggttaat tctctgccta
    32521 aacgtttttg ttgtagaaca atcgcctgtt tacgtcttgg gtcagcactg aatttgtaaa
    32581 acgcccaaaa tccaccacaa ataataacca aggcaactaa aataatggaa atagtatttg
    32641 gcagttgcat tgaatcaagc cattgccaaa taccataaat aatacctaga aaaataattg
    32701 gcataaattg tgccactgaa tgctcctttt tattcaaaat tgcaaagttt tctcaaaata
    32761 tgaccgcttg caagcggtcg tattttacac gaatattgac aattaatcct tacccacatg
    32821 aagaattgcc aaaaatgctt cttgtggcac ttctacgtta ccgagagatt tcattcgttt
    32881 tttaccctct ttttgttttt gtagcagttt cttcttacga cttacatcac caccgtaaca
    32941 ttttgctaat acgtttttac gcaactgttt taccgttgag cgagcaatga cgtggttacc
    33001 aattgccgct tgaatagcga tgtcaaattg ttggcgtgga ataagttcac gcattttttc
    33061 cactaattca cgtccacgat acgccgcatt tgcacggtga acgataatcg ccaacgcatc
    33121 aacacgctcg ccgttaatca taatatccac acgcaccata tcagccgttt ggaaacgttt
    33181 aaaaccgtaa tcgagtgaag cataaccacg agaggttgat tttaagcggt cgaagaagtc
    33241 taacactact tcgcccattg ggatttcgta agttaaggcg atttggttac cgtgatagac
    33301 catattggtc tgtacgccac gtttttccac acaaagggta atcacgttgc ctaggaattc
    33361 ttgtggcaca agcatattac attctgcaat cggctcacga atttctgcaa tattgttgat
    33421 tgctgggagt ttcgatgggc tatccacata gatcgtttcg ccactggttt gcaccacttc
    33481 gtaaactacg gtcggagcgg tagtaatcaa atcaagatcg tattcacgct ctaaacgctc
    33541 ttgaatgatc tccatatgca acaagcctaa gaagccacac cggaagccaa agcccaacgc
    33601 acttgaagtt tctggctcat agaacaatga cgcatcattt aggcttaatt tgcctaaagc
    33661 atcacggaag gcttcgtagt cgtctgaact aatcggaaat aaccctgcat aaacctgtgg
    33721 ttttactttc ttaaagcccg gtaatacttc agttgctggg ttgtggtggt gggttaatgt
    33781 atcgcccact ggtgccccta aaatatcttt aatcgcacaa actacccaac ctacttcacc
    33841 tgtttttagc tcggtagtat ccacttgttt tggcgtgaaa ataccaaggc gatctacatt
    33901 gtaagactgc cctgtactca tcactttaat tttatcgcct tttttcagca cgccattttt
    33961 cacacgcact aaagacacaa cgcctaaata gttatcgaac caagagtcga taattaacgc
    34021 ttgtaatggt gcttccgcat cgccttctgg tgcaggcatt ttcttcacga tttcttctaa
    34081 aacatcttca atgcctaaac ctgttttagc tgaacagcgt actgcatcaa tggcatcaat
    34141 gccgacaata tcttcaatct cttctgccac acgctcaggc tcggctgctg gtaaatcgat
    34201 tttatttaaa attggcacaa cctctaaatc tatctcaatt gcggtataac aattcgccaa
    34261 cgtctgtgct tccaccccct gccctgcatc aaccactaat aaagcacctt cacaagcagc
    34321 aagcgagcga gaaacttcat atgagaaatc cacgtgccct ggcgtatcaa taaagttgag
    34381 ctgataaatt tcgccatctt tcgctttata gtttaaggtt acactttgtg ctttaatagt
    34441 aattccacgc tcacgctcaa gatccattga atctaatact tgagcctcca tttcacgatc
    34501 tgataagcca ccacaagttt gaattaagcg gtctgataaa gtcgatttgc cgtgatcgat
    34561 atgagcgata atcgaaaagt tacgaatatt ttgcattttc atcgggcagt taatgtcctg
    34621 ttttgttatt tgtttatcaa aaattaatcg gggaattgta cttgaaatac aaggttttgc
    34681 aaagaaaaca aatagcaata agcggttatt ttttcctaaa aatgtgcaaa tttcttgaga
    34741 aaaatgac
//
LOCUS       DANLXK010000011        34342 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.011, whole genome shotgun sequence.
ACCESSION   DANLXK010000011 DANLXK010000000
VERSION     DANLXK010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34342
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            56..274
                     /locus_tag="PXD88_000436"
     CDS             56..274
                     /locus_tag="PXD88_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6280050.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            284..2254
                     /locus_tag="PXD88_000437"
     CDS             284..2254
                     /locus_tag="PXD88_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL6280051.1"
                     /translation="MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVT
                     YEYHLTSLPIETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQIASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIDVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVDFN
                     TVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2434..2922)
                     /locus_tag="PXD88_000438"
     CDS             complement(2434..2922)
                     /locus_tag="PXD88_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280052.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            2954..3895
                     /locus_tag="PXD88_000439"
     CDS             2954..3895
                     /locus_tag="PXD88_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6280053.1"
                     /translation="MTLIDQIKQHIAESGSSQGKVAKEAGINAGALSAYLNENYKGNN
                     EELEAKLIAYLERIEAKKREFVEAPSFIETKTANQIFGSLRFAQNTGVLAIIHGASGV
                     GKTQAAREYRKRYANVWLVTASPSRSSLSEVLYEIALELGMNDAPRRKGTLARLIVRK
                     MKGTAGLLIIDEADHLPYEALEELRLLQEEVVNESDIGAGVGLVLIGNDKVYTRMKGG
                     INPAHEYGRLWSRSAKRTSIQKTKKEDTQAVAKAWGLSENQEALKVMQAITETGGGLR
                     ILTHTLRLAAMVAKDRMIPLTADLIQLARKDLLSTGD"
     gene            3898..4212
                     /locus_tag="PXD88_000440"
     CDS             3898..4212
                     /locus_tag="PXD88_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280054.1"
                     /translation="MRTPKPKHSFNRTNQAACRFLKQTQKAIIRLNSLGFTVLNIDFT
                     RIKPRIEVEIGNNKHIAQGLIYEGKAYRYSFGKSEDLGRWEGYYTMLEGIRVWWRQAA
                     IH"
     gene            4224..4460
                     /locus_tag="PXD88_000441"
     CDS             4224..4460
                     /locus_tag="PXD88_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280055.1"
                     /translation="MKTLALLTALLGLVGCDLVQSKQAKNYIGNNLTEICIDNVVYLI
                     YSGDKKGGITPKVNKDFYPYTCTNKEERQNGKTR"
     gene            4444..4737
                     /locus_tag="PXD88_000442"
     CDS             4444..4737
                     /locus_tag="PXD88_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280056.1"
                     /translation="MAKPDETPITKAECQSQLAELGVQYKKLPMAITRHICNATTNIH
                     GKVIKVSVVERVGYGVQITAQGNEKSCLVTYEAMLGMAEAMGLFDEVKEQNND"
     gene            4859..5077
                     /locus_tag="PXD88_000443"
     CDS             4859..5077
                     /locus_tag="PXD88_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL6280057.1"
                     /translation="MNDELAAISASYAQHNRYQHYAEKAAEAERKGNYKEAQDHWEVA
                     KLSAKKTANRDWAEQRAEFCKRMHNKPF"
     gene            5087..5269
                     /locus_tag="PXD88_000444"
     CDS             5087..5269
                     /locus_tag="PXD88_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280058.1"
                     /translation="MTETVKAQLNSQLNEAIIQLIQAQKYLNQDDAIRSGVYIGTVQD
                     LLPKVHLKLLTANRKH"
     gene            5286..5675
                     /locus_tag="PXD88_000445"
     CDS             5286..5675
                     /locus_tag="PXD88_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280059.1"
                     /translation="MAITEEQWKEIKQKLDSIIGRVKFRYKEHLLTVDVVQIKRSLKL
                     AVYVDGEIDGAWTKEGHEIRPYLEEVWYRKERPFFNAKEKKEYRGLMSKKKLNEKIVT
                     YSPMFPSPTALTRQYKKLDGLELIEVI"
     gene            5724..6011
                     /locus_tag="PXD88_000446"
     CDS             5724..6011
                     /locus_tag="PXD88_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280060.1"
                     /translation="MNKNEFFKKYHLEGSLAILDLDANDDQSQFCYQALLEYRELPLD
                     TFLAEYSDDEDMTESEFIELMLDELEWIIRRAKNAKRFVKKRQKTMREEIM"
     gene            6130..6675
                     /locus_tag="PXD88_000447"
     CDS             6130..6675
                     /locus_tag="PXD88_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL6280061.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            6662..7195
                     /locus_tag="PXD88_000448"
     CDS             6662..7195
                     /locus_tag="PXD88_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280062.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTERETMKAELEKTRNAIAYVQRFVDLGREE
                     VVKNSPEYQIWLAHKPK"
     gene            7360..7719
                     /locus_tag="PXD88_000449"
     CDS             7360..7719
                     /locus_tag="PXD88_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6280063.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            7855..8364
                     /locus_tag="PXD88_000450"
     CDS             7855..8364
                     /locus_tag="PXD88_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL6280064.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            8367..8636
                     /locus_tag="PXD88_000451"
     CDS             8367..8636
                     /locus_tag="PXD88_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL6280065.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            8630..8977
                     /locus_tag="PXD88_000452"
     CDS             8630..8977
                     /locus_tag="PXD88_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL6280066.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            9004..9156
                     /locus_tag="PXD88_000453"
     CDS             9004..9156
                     /locus_tag="PXD88_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280067.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            9156..9491
                     /locus_tag="PXD88_000454"
     CDS             9156..9491
                     /locus_tag="PXD88_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL6280068.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            9493..9789
                     /locus_tag="PXD88_000455"
     CDS             9493..9789
                     /locus_tag="PXD88_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280069.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            9812..10384
                     /locus_tag="PXD88_000456"
     CDS             9812..10384
                     /locus_tag="PXD88_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL6280070.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            10384..11940
                     /locus_tag="PXD88_000457"
     CDS             10384..11940
                     /locus_tag="PXD88_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL6280071.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            12059..13513
                     /locus_tag="PXD88_000458"
     CDS             12059..13513
                     /locus_tag="PXD88_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL6280072.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            13506..14783
                     /locus_tag="PXD88_000459"
     CDS             13506..14783
                     /locus_tag="PXD88_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6280073.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(14985..15329)
                     /locus_tag="PXD88_000460"
     CDS             complement(14985..15329)
                     /locus_tag="PXD88_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280074.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            15393..15857
                     /locus_tag="PXD88_000461"
     CDS             15393..15857
                     /locus_tag="PXD88_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6280075.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            16092..17207
                     /locus_tag="PXD88_000462"
     CDS             16092..17207
                     /locus_tag="PXD88_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL6280076.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            17238..18164
                     /locus_tag="PXD88_000463"
     CDS             17238..18164
                     /locus_tag="PXD88_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL6280077.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            18233..18514
                     /locus_tag="PXD88_000464"
     CDS             18233..18514
                     /locus_tag="PXD88_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280078.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            18514..18948
                     /locus_tag="PXD88_000465"
     CDS             18514..18948
                     /locus_tag="PXD88_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL6280079.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            18954..19451
                     /locus_tag="PXD88_000466"
     CDS             18954..19451
                     /locus_tag="PXD88_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL6280080.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            19536..20921
                     /locus_tag="PXD88_000467"
     CDS             19536..20921
                     /locus_tag="PXD88_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL6280081.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            20932..21447
                     /locus_tag="PXD88_000468"
     CDS             20932..21447
                     /locus_tag="PXD88_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL6280082.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            21543..21857
                     /locus_tag="PXD88_000469"
     CDS             21543..21857
                     /locus_tag="PXD88_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL6280083.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            21854..22006
                     /locus_tag="PXD88_000470"
     CDS             21854..22006
                     /locus_tag="PXD88_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL6280084.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(21985..22287)
                     /locus_tag="PXD88_000471"
     CDS             complement(21985..22287)
                     /locus_tag="PXD88_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280085.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            22335..24992
                     /locus_tag="PXD88_000472"
     CDS             22335..24992
                     /locus_tag="PXD88_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6280086.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            25002..25925
                     /locus_tag="PXD88_000473"
     CDS             25002..25925
                     /locus_tag="PXD88_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280087.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            25909..26136
                     /locus_tag="PXD88_000474"
     CDS             25909..26136
                     /locus_tag="PXD88_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL6280088.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            26129..27193
                     /locus_tag="PXD88_000475"
     CDS             26129..27193
                     /locus_tag="PXD88_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280089.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            27180..27716
                     /locus_tag="PXD88_000476"
     CDS             27180..27716
                     /locus_tag="PXD88_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6280090.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            27771..28133
                     /locus_tag="PXD88_000477"
     CDS             27771..28133
                     /locus_tag="PXD88_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL6280091.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            28143..29246
                     /locus_tag="PXD88_000478"
     CDS             28143..29246
                     /locus_tag="PXD88_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL6280092.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            29239..29805
                     /locus_tag="PXD88_000479"
     CDS             29239..29805
                     /locus_tag="PXD88_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280093.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            29815..32094
                     /locus_tag="PXD88_000480"
     CDS             29815..32094
                     /locus_tag="PXD88_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL6280094.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            32095..32697
                     /locus_tag="PXD88_000481"
     CDS             32095..32697
                     /locus_tag="PXD88_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280095.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            32681..32956
                     /locus_tag="PXD88_000482"
     CDS             32681..32956
                     /locus_tag="PXD88_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280096.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            32956..33243
                     /locus_tag="PXD88_000483"
     CDS             32956..33243
                     /locus_tag="PXD88_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280097.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            33253..33417
                     /locus_tag="PXD88_000484"
     CDS             33253..33417
                     /locus_tag="PXD88_000484"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280098.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            33410..34114
                     /locus_tag="PXD88_000485"
     CDS             33410..34114
                     /locus_tag="PXD88_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280099.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
BASE COUNT        10833 a         6861 c         8108 g         8540 t
ORIGIN      
        1 aatgatttac atcatttaag tagtttctaa aactaacttt caaggatctc acaaaatggc
       61 aagaaataaa agagttcgag atatgagtaa tttcgaaatt cgtggtgagc tgatgaaaat
      121 cggtaagtcc ttatctcagt taggtattga gaatggatta gcaaaaacca cagttcgtaa
      181 tgcgttagat aagccatatc ccaaagggga gcaaattatt gcaaaagcga ttggtaaaac
      241 accgcaggaa atttggccct ctcgttacga ataaggagct tttatgaagg aatggttttt
      301 agccaaagaa atcgcaggat tatctggagt tccagaatta ccgaatagcg tttcaagatt
      361 ggcaaccaaa gaaggatggc aaaaacgaca aattcaaggt gtaagaggtg ttacttacga
      421 ataccacctc accagcctac ccattgaaac ccaacaacaa cttagactaa acgccgccct
      481 tgcggtaata ccgcaagcgg cagaactaca acccaaacga gacgaccccg cacttatcgc
      541 aaggctcaat aatgccaccg ataaaggcag ggataaagca aaaggcaagg cagaagcctg
      601 tatgcagttg caagcctttc tcgaccaagg gtttagttat acgcaggcag aagcgggagc
      661 ggcaaccgct aaaaatgtgt cgcaaggttc tttaaaaaat tggtactaca aagtgaaagg
      721 tcaccccgtc catttatggc aggcgatctt aatttccgaa agcggtagga gtaaaaagcc
      781 gcagctgaaa gccaagatta ctgaagaagc gtgggactgc tttttggcgg attacctccg
      841 ccctgaaaag ccggatttac gggcaagtta ccgccgaacc caagccatcg ccaagcaata
      901 cggctggcaa atagcaagtt tacagacttt ccaacgccga gtgttggcgg aagtgcctta
      961 cgaggtgatt ttgctcaaac gggaaggagc aaatgcggtt gccaagttag tgccggcact
     1021 acaacgcacg gtgaaagata ttctcgcagg agaatggatt aacggcgatg gctatcaaca
     1081 caatgtgttt gtgaaatggc acaccggcga gattgtccgc cctaaaacgt ggttttggca
     1141 agatgttcgc acccgcaaga ttttaggtta tcgaacatcg atttcggaga atactgacag
     1201 catacgccac gcattaatgg atgtgatttt taacgtaggc ataccgaaaa cgctcacgct
     1261 ggataacacc cgagcagcag cgaataaggc aatgaccggt ggtattgaaa accgctaccg
     1321 ctttaaacat accgagttag acccgaaagg cattatgccg attttaggga ttgatgtgca
     1381 ttttacctca attctttatg gtgaaggaca cgggcaagcc aagccgattg aacgtgcttt
     1441 cgggcgaggc ggaattggcg agaaaataga taaacgccct gaattaagtg gtttctatac
     1501 gggcagaaat gcacaagaaa cccctgataa ctataacggc ggtaaagacg gtgtggatta
     1561 caacacattc ttgaaagcca tagcagcagg gatagaagag tacaactctc aaaccgaacg
     1621 ccataccgaa atgtgccgag gagaattgag ttttaaccaa gtttgggagc gggattacca
     1681 cccaagcaac gtaagacaag ccagccctga acagttgcgg ttactgttct tacaggcaga
     1741 aacggtcagc attaaacgca acggcagttt tacgctgaaa gcagccggca aactttacgg
     1801 cttaactaac gtttactggg cagaaagcct gatagggata acggataaga aagtagtggc
     1861 acggttcgac cccgatgact tacacggcaa cgtgtatgtg tacaacctag aggggcaatt
     1921 cttagccgaa gcggtttgcc gagaggcgaa aggatttggt gataccagtg caagccgtga
     1981 gcaaggtcgc ttatatcaga aagtagtgaa aagtgccaaa gctcaagccg aagcccttga
     2041 attactggaa gctcacgaac tggcaagcct cgccccacaa gtggacgtgc ctgagccgat
     2101 agagaagaag gtaaaagagg tgctggtgaa agaagatttt atcgtggatt tcaacactgt
     2161 gcgtaaagca acggtggtgg aagaaaccga agagatcagt atttttgatg aagtgttact
     2221 gaaacaagag aaacaacttc gcatagtgga ataactagcg gtcagttttt gcaaaaaatt
     2281 tgcaaatttt tctaaaaaaa cgaccgcttg aaatgagatt taaacagggt ttaaacgcct
     2341 ttaaggagta aaaaatgaca ttaacagggc aagcttaccg agtgattttc aaggaactca
     2401 aagagcaaca agagagtgaa tttgaacagg ctttcaagaa agggattgcc aaaattcagc
     2461 agaatcaaac tcaggaatcc attctggtaa accgtgatat gtttcaagct gaaaagctaa
     2521 cactgctttc acaaaagttg gaagcggttg agcaattact tcgccttgaa ttaaatcagc
     2581 cgaattttca agcaaaactt gaagactacg ctgacgcatt acgaacaacc attttaagta
     2641 aagtagccaa ataagagctt tagactcttg aaggcttaac atctgagcca ctttttttac
     2701 tgtcggcatt ataccgtcaa gatcatcaat agaagttaaa tgatgaaaag aggaatggta
     2761 ttcagctaaa caaaaattga ttgtactaag tttaaacaaa gtaatgcaat ttttcatcac
     2821 gatggcattt gctcgtttta acttaaaacc agagaaggtt gcacgagcag aatcaagggc
     2881 tatttgatga atttcatcat ctgttaaaga acgaaagagc ataaaaacct ccaaacaaaa
     2941 acaggacacc attatgacat taatcgacca aattaaacaa cacatcgccg aaagcggcag
     3001 ttctcagggg aaagttgcca aagaagccgg gattaatgcc ggggcgttat cggcttacct
     3061 gaatgaaaat tacaaaggca ataatgaaga acttgaagca aagctgattg cttatttaga
     3121 gcgtattgag gcgaagaaaa gagagtttgt cgaagctccg agttttattg aaaccaaaac
     3181 cgcaaaccaa attttcggtt cgttacgatt tgctcaaaat actggcgtgc ttgccattat
     3241 tcacggtgcg agtggcgtgg gtaaaacaca agcggctaga gagtatcgta aacgctatgc
     3301 gaatgtatgg ttggttaccg caagcccttc tcgttcctca ttaagtgagg tgttatatga
     3361 aattgctctt gaacttggaa tgaacgatgc accacgccgc aaagggacat tggctcgttt
     3421 aattgttcgc aaaatgaaag gcacagcagg tttattaatt attgatgaag cagaccattt
     3481 accttacgaa gccttagaag aattaaggct gttacaagaa gaagtagtga atgaaagtga
     3541 catcggagct ggtgttggct tagtgctgat tggcaatgac aaagtctaca cccgaatgaa
     3601 aggcggaatt aaccctgctc acgaatatgg gcgactttgg tcacgcagtg ccaaacgcac
     3661 cagtattcag aaaaccaaaa aagaagatac ccaagcggta gccaaagcgt gggggttgag
     3721 tgaaaaccaa gaagcactca aggtaatgca agccattact gaaactggtg gcggattacg
     3781 gattctgaca cacaccttac gattagcagc gatggtagca aaagaccgaa tgattccctt
     3841 aactgccgat ttaattcagc tcgcacgtaa agatttactc tcaacaggag attaacaatg
     3901 agaaccccaa aacccaaaca cagttttaac cgcaccaacc aagcagcgtg ccgtttttta
     3961 aaacaaaccc aaaaggcaat tatccgctta aacagtcttg gctttacggt gctgaatatt
     4021 gattttaccc gtattaagcc ccgcattgag gtggaaatcg gcaataacaa gcacattgct
     4081 caaggcttga tttatgaggg taaagcctac cgctacagct tcggtaaaag cgaagattta
     4141 ggcagatggg aaggctacta caccatgctg gaaggtatca gagtgtggtg gcgacaagca
     4201 gcaattcact aggagaaaaa cagatgaaaa ccttagcact attaaccgcc cttttagggc
     4261 ttgtagggtg tgatttagtc caaagcaaac aagctaaaaa ttacatcggc aacaatttaa
     4321 ctgaaatctg tatagataac gtggtgtacc tgatttattc cggtgataaa aaaggcggaa
     4381 ttaccccgaa agtaaataaa gatttttacc cttatacctg tacaaacaaa gaggaaagac
     4441 aaaatggcaa aacccgatga aacacccatt acaaaagcag aatgtcaatc tcagcttgca
     4501 gagttggggg tgcaatataa aaaactgcca atggcaatta caagacatat ttgtaatgcc
     4561 acaaccaata tacacggcaa agttataaag gtcagtgtgg tagagagagt tggatatggc
     4621 gtccagatta ccgcacaagg taacgagaaa tcttgcttag taacctatga agcaatgtta
     4681 ggtatggcag aagcaatggg attatttgat gaagttaagg agcaaaataa tgactaaaaa
     4741 aacaaccaga gtaaaaagtg caacccaaag tgcgatttat caaagccgag atgaagtgca
     4801 agtggctata aaaatcattg gtgataaaca gcgtgaattg caacgtttag ctacggcaat
     4861 gaatgatgaa ttagctgcta ttagtgccag ttatgctcaa cataaccgct accaacatta
     4921 tgccgagaaa gcggctgaag cagaacgcaa aggcaactat aaggaagctc aagaccattg
     4981 ggaagttgca aaattatcag caaaaaagac cgctaaccga gactgggcgg aacaacgagc
     5041 ggaattttgt aaacgtatgc acaataaacc gttttagggg gaagtgatga cagaaaccgt
     5101 aaaagcacaa cttaacagcc aattaaatga ggcaattatc cagttgatac aagctcaaaa
     5161 gtatttaaac caagatgatg ccattcgcag tggagtgtat atcggtacgg tgcaggattt
     5221 attgccaaag gtgcatttaa agttattaac ggcaaatcgt aaacattgat agagatgagg
     5281 taaaaatggc tattacagaa gaacaatgga aagaaattaa gcaaaagcta gatagtatca
     5341 tagggagagt taaatttaga tacaaagagc atttactcac ggtagatgtt gtacaaatta
     5401 agcgatcttt aaaattggct gtgtatgttg atggggaaat tgatggagct tggacaaaag
     5461 aaggacacga aattcgccct tatttagaag aagtttggta tcgcaaagaa cgcccttttt
     5521 ttaatgctaa ggagaagaaa gagtatagag gtttaatgag caaaaaaaaa ctgaatgaaa
     5581 aaatagtaac ctactcacct atgtttccat caccaactgc actgactcgt caatataaga
     5641 aactagatgg cttagagttg attgaagtga tttaaaaccc atttacagcc catttaaccc
     5701 cgagttattt aaaggacaac aaaatgaata aaaacgaatt ttttaagaaa taccacctag
     5761 agggttcact agctattttg gatttggatg caaatgacga tcaaagccaa ttctgttacc
     5821 aagcattgtt ggagtataga gaactcccgt tagacacatt tcttgcagag tactcagatg
     5881 atgaggatat gacagagtca gagtttattg agttaatgct tgatgaatta gagtggatta
     5941 tccgcagagc taagaatgct aaacggtttg ttaaaaaacg acaaaaaacg atgagggagg
     6001 aaattatgta acagctcaac ccaaccaacg ccacatcatc cgtctagctg agaaacaggt
     6061 gtggcgtttg ttttaagtgg gcaatcaaaa gcgataacgt ttttaattgt ttatttatcg
     6121 gagtaacaaa tgacagacaa agccaagcta atccagctta tccatattgc caagtcgcaa
     6181 ctagcaatgg acgatttaag ctaccgtgaa atgctgaaac ggctcaccaa taaaaccagc
     6241 tcgaccaaat gcacggtggt cgagttgcac aaagtcttac acgaactgca aaccaaagga
     6301 gcaaaagtaa aatattttgc caaacgcagc aaaaaaccga ccgcttacag cccggcaaca
     6361 ggggaaacag cggtaaaaag ccaaattgct cataaaatcc gagcggtatg gataacaatg
     6421 ggcaaacacg gatttttaaa cgacccaagc gaaaaagcat taaatgctta tatgcgtaag
     6481 gttatcaata ataaaactag accaacaata ttattaaatg tctctgcatt agaggctgga
     6541 gatgcaagtt atatgcttga aatcctcaaa aaatggcata aacgtgtgat gattaaagcc
     6601 ctaagcaaaa gttgcacagt tgatccaaag ataagctacg atgaattagt ggagtggtac
     6661 aatgaagtta tgtagatgcc cgatttgcca cagtgatata cacctagaag ctctcgtaga
     6721 agatgaagcc gggcgtgaac tactcggcaa aatcagccaa ttaacacacg gtgttgctca
     6781 accgatggtt gcttatttag gcttatttaa accgcaaaaa agtaacctta ataactcaag
     6841 agccttgaaa atactcaatg atgtattagc actctaccct tgctcattgc tactggctca
     6901 agccctatct gaaacggtag taagcatacg caaaaaacgt cagcaagcaa tggaaaacgg
     6961 gcagaaaatt gaaccgctac cgaaccataa ctatttaaaa tcggtgtatg aaacgcaaaa
     7021 agtccatttt gctgtggtga gaaccggcaa aaccgaacgc gaaacaatga aagccgaact
     7081 ggaaaaaaca cgcaatgcga ttgcctatgt gcaacggttt gttgatttag gacgtgaaga
     7141 ggttgttaaa aatagccctg agtatcagat ttggttagct cataaaccca aataacacaa
     7201 gccaccaaaa ggtggctttt taactttttg aaagtgcgat aaaacctgat ttaaacaggc
     7261 tttaaacggg ttttaagatt gagtttaaaa aaatatttca caaaataaga atggtttttt
     7321 atacaataac cgaaacggtt tttggatagg aaatagacaa tggaattagt ggatattttt
     7381 gaagaaaaag ccccggaagt gttaaccgat ttagccaaac atattgaagt cgcattagaa
     7441 gaaaaatgcc aatttagccc cgaaaaggca aagcaaatcg gtattgatat tgcccaacaa
     7501 atggctcaaa actggggtgg cgaggtaatt tatattcctc gcaatttgtt gatggctctt
     7561 aatgagcgag atatgaaaat ttacgaagag tttaacggta acaatcaccg tgaattggct
     7621 cgtaagtaca atgtatcaat gcagtgggta tataaaattg tgaagaaagt ccataaggac
     7681 gaagttgccc gcaggcagat gagtatgttt gagatgtaaa tcattttttc ccagccctga
     7741 tcattttcag ggctttttgt gtattaaaag aacgcagtct ttaaacccgt ttaaaatcaa
     7801 tttttcagca aattctttaa actcctttta aagcaatttt aataggagtg tgctatgtct
     7861 caaaatctta cctttcgcca aatttttgac cgtttaatcg gacacgaggg cggctatgtc
     7921 aatcacccac aagacccggg cggagaaacc cactggggaa ttaccaaacg taccgcggtt
     7981 gctaatggtt atatgtatgc aatgaagaat atgacccgtg agcaagccta ccaaatctac
     8041 gaaaaagcct tctggcaacg ttatcgttgt gcagagctta agccagcagt tgcttatcaa
     8101 tttttcgacg cagtggttaa tcacggtttt ggtaatgcta gtcgtatgtt acagcgtgca
     8161 gtaggcgtag cggatgatgg cattattggc aatattaccc tgcaggcaat taatgcaaaa
     8221 tctgaaagcg atctcttaat gctatttaat gccgaacgtc tgaagtttta cacaaaatta
     8281 cgcaacttcc ccacttttgg taagggttgg gtcaatcgtg tggcaggcaa tttagaatac
     8341 gcagcacaag ataatgaggt ttaaaaatgg caaaactatt taaagaacta ctctcaacca
     8401 atggcacatt atccaccact agcaccgtgc agttttttgg cacattgtgt gtatttggtt
     8461 taatggttta tgcagtaatt acccaacaac cttatgccga aagcctatta aataatgtgt
     8521 tgatttatct ttttggggca actaccgcta agggtgtagt aaccagctat caagccaaaa
     8581 ttaaaggggg tatccataaa caacaaagta catttaaaga ggaggaggga tgttaatgca
     8641 acaaatttta ggcgtgattg gcgtcatcgc agcaatattg tcttatgctt tgtttaaaag
     8701 ctggcaacta aaacgtgagc gtaaaaagaa tgccatatta caagctgaaa aacagcaaca
     8761 agcggttgaa attgagcaaa aaaaagcaga ggtaaaatat gtgtatatat caaagaaaaa
     8821 caatgaaaaa gttactcgca gctctgctag cgatattgat gacaagttgc agcaacacgg
     8881 ttacttccgt gacaacaaca ggttgcacgg cgttcagtct gatttatccg aaccgtgcgg
     8941 atacgctgga aacgaaacgt cagattcttg ctcataatct gacttttgag gaaatttgcc
     9001 aaaatgaaat acattaaaaa attacgtaaa cgctggcaaa tttggcgttt tttaaaaaat
     9061 catcctgagg ttgcacaacg ccgagattta ttagcgattg ccattaaaca gggcgtagaa
     9121 aaccctgtag ggcgtgcaag acggagggag ccataatgga tttatttaca gtcttttggg
     9181 agtctatccg tgctaacttt ggttttattt ctgcgttact caccattgtt gttacggcat
     9241 tttggctcaa gctagatagc aaatacgcca agaaaaatga tcttggtgaa ttgctggaaa
     9301 ttgccaaaag ccacgataac cgcttaacca ccttagaaac caaggtagaa aacctgccaa
     9361 gtgcggtgga cgtggaaaag ctgaaaacct tagtcactga tgtaaaaggc gataccaaag
     9421 ccacctcaaa gcaggtggat agtatcagcc accaactcgg cttgttatta gaagcaaaat
     9481 taaaggaatg atatgtcgtt aagagattta ctcactcaag accaacggct ggtgatttta
     9541 cgctcattag cggaagccgg ctatgatgcc aatgagtcaa ttattagtga ttgcctagat
     9601 ttatacggtc acgatattag ccgtgattta gttcgcaccc atttaagttg gcttgaagag
     9661 caaggcttac ttaccttaga acgtttgcga gatggctata tggtggcaag cattacccag
     9721 cgtggcttag atgttgctca agggcgtgtt gtggtaagtg gcgttaaacg ccctcgccct
     9781 aaaatttaaa cggtatttaa ggagcgttta aatgagcgag aaaaatactc gtggtcgagc
     9841 atcaaaagtc gatttactgc cgccgaatat taaaacccaa ctggcgatga tgttgcgtga
     9901 taagcagtac tctcagtcac aaattttaga agaaattaat gacttaattc gggattgtgg
     9961 cttgcctgat gaaatgctgt taagcaaaac cggattaaac cgctacgcaa gccgtatgga
    10021 acgcttaggg gcaaaaatcc gtaatgcccg ggaagttgcc gaaatttgga ctaagcaatt
    10081 cggcgaaatg ccacaaaccg atattggcaa aaccctaatg gaaatggtca agcaaattgc
    10141 ctttgaaacc tcattgaaat taggcgaaca agaaggcggt attgagccaa aacagcttgc
    10201 tttgctctcg tctgctattc aacgtttaga acaagccgaa agtttgagtt ttaaacggga
    10261 acaggcaatc cgtaaagagg tcgcacaaca agccgctgaa accgctgaaa aagtggtggt
    10321 gcaagcgggt ttatccgctg aaaccgtccg tacgattaaa gagcaaattt taggaattgc
    10381 ataatggcac tactcaataa cagaccgctg aatgaattag cccctgaatg ccgttcgttt
    10441 ttagagagca ttcacgcttt taatcctaac gaactgttat tgggctatca aaagcggtgg
    10501 attgcggacg acagccaact caaaattgcc gaaaaaaccc gccgttgcgg tttaacgtgg
    10561 gcagaagcag cagataacgc cttaatcgca agcacccgca aatcagacgg tggctctgat
    10621 gtattttaca ttggctcaaa taaagagatg gcacgtgaat atatcgatgc tgtcgcaatg
    10681 tgggcaaaag cctttaatcg tgtggctgga gaaatccaag aagagatctt tgaagacgaa
    10741 gataaagaca tcttaaccta tgtaatctac ttctcatcgg gttttaaggt caaggcatta
    10801 tccagtaatc cgaaaaacct gcgtggtatg cagggcgtgg tggtgattga tgaggcggca
    10861 ttccacgaat acttagcgga agtcttgaag gcggcgttag ctctcacaat gtggggggcg
    10921 aaagtccgta ttatttcgac ccacaacggc tcggaaaatc tgtttaatga actgattacc
    10981 gatagccgtg ccggccgcaa acgctactct gtgcatacga ttacgattga agatgcctgc
    11041 cgtgatgggc tatatcaacg tatctgccaa gtagtgacga aaaaaacgtg gtcaccggaa
    11101 gcagaaaaag agtggattga aaacctactc aacgacaccg ccagcgaaga agacgcattg
    11161 gaagaatact tctgcgtacc gaagttcggc tcaggcttat ggctctctcg tgctttgatt
    11221 gaacggcaga tgagcgaagc cacgcctgtt atccgcttta cggcaaaaga tggtttcagc
    11281 cttgtggctg aaccgacacg ctatgcggag attgccgaat ggtgtgaatt agaacttgag
    11341 ccgatattgg caacccttaa ccctgatttg ttgcatttta tgggcgaaga ctttgcacgc
    11401 agcggcgata tgacctctct ggtggtgctt gctcagcaac aaaaccttgt tcgtaaagtc
    11461 gcctttattg ttgagcttgg caatatgccc tacaagcaac aagagcaaat cgtgatgttt
    11521 atgcttaaac gcttaccgca ttttgccggt ggggcttttg acgcccgagg caatggtggc
    11581 tatttagccg aagctgcacg agatgaattt agcaccttga ttgactgcgt gcagttatcg
    11641 gaaaaatggt atcgggaaca caccgccccc tttaaagcgg cattggaaga cggcgagctg
    11701 gaagctattc caaaagatgc ggatattttg gctgatttgc gttcatttca ggtggtgaaa
    11761 ggcgtaccac gcataccgga taaacgcact aaaagtgcag atgggaaaag caaacgacac
    11821 ggtgataccg caatttcttt gctgttggct cattatgcca gccgacaatt agtgcaaatg
    11881 ccagttgagc cggtatcacg ccgtccacgc catagccaac aattaacaga aggatattaa
    11941 caaatgagat atgtaccact ttgtttaatg atgtgtgcct cattctacct atttattaac
    12001 aacattgacg gctggggttg gggaattctt ttatctttta ttttagcgag tgcagcttat
    12061 ggcaaagaag aataatttaa ttagtgaaat tgccacccgt gccagaagta ttgattactg
    12121 ggcatttggc tattatctgc cgaaccctga cccgatttta aaacgaatgg ggaaagatat
    12181 ttccgtttac cgtgagttgt tatcagacgg gcaagttcgc tcaggcgtac gccgtcgaaa
    12241 agcggcgatt aaaggcttag agtggcgaat taccaccact aacaatgaga aagtggacga
    12301 gcagatttat caaatattta accgcttgcc gatgaataac ctgattaccg aaatgctcaa
    12361 tgcagcactc tatggctacc atatcagcga ggttatttgg gcaaaagagg gtgagttatt
    12421 tgtgccaaca gaaatcattg gtaaaaagcc tgaatggttt atgtttgacg acgaaaacct
    12481 actgcgtttc cgtaccaaag aaaactgggc ggacggcgaa ttattaccag atgataagtt
    12541 cttgcttact acgcaagaag ccacccaaga taatccctac ggtttaggcg atttatccct
    12601 ctgcttttgg gcggcgacct ttaaaaaagg cggtttcaaa tactggttgg aatttaccga
    12661 aaaatacggc tcaccgtggt tgattggcaa acaccctcgc caagctcaca atacagataa
    12721 agagcgacta gctgatgccc tagagggaat gattagctca gcgattgcgg ttatccctga
    12781 agatagttcg gtcgaaatca aagatgcagc gggcaaatct gccagcaccg atgcctttga
    12841 aaagttcctc aatttttgca aggcagagat caatatcgcc ctacttgggc aaaaccaaac
    12901 caccgagcaa gaaagcaacc gtgccagtgc acaagtaggc ttggaagtta tggaagatat
    12961 tcgctcggac gaccaagcga tgattgaagc caccttcaac accttgttgc agtggattgt
    13021 gaaatataac ttcaatgtgg aacaactgcc gaagtttgaa ttttacgagc aagaagccat
    13081 caacaccgac caagttgaac gagacagtaa actccacgca atgggcgtgc gtttttccaa
    13141 agcctacttt gagcgtgaat atggctttga ggcgggtgat attgaggtgc aagcggtcga
    13201 aaaagcggaa aaatctgcaa ataccacaga atttagcgaa ggacaacgcc gaacccaagt
    13261 gccaatgcct gtgccaattt tggaacagct agaacacgag ggagaagcaa tggtggacga
    13321 ttggctacaa ggggtgagag ataaactcgc tcaagcagat agtctggagg atttccaaag
    13381 tcagctagat agccttatcc ctgaattaag ctttgccgaa tatggcgagc tgttggcgtt
    13441 aggctcaacg gtggcagagc ttgcaggcag acaatcggta aacgatgaaa ttaaggcaaa
    13501 acgcaatgcg taaatttacc tttaaacagc aagcccaata ttttgagaaa aaactcaatc
    13561 tccgcacgaa tagctacctt gatattctgg gcgaagagca cgactatttt ttcgtggtgg
    13621 ctggggcgaa tcgtaatgaa gtgttgagtg agtttcgcaa ggcggtggat gaggctattc
    13681 acaacggcga aaccttagag aactttcgca agcggtttga tgaggttgtg gcaaaaacag
    13741 gctgggagta caacggcgga cgaaattggc gaacacggat tatttacgat accaatgttt
    13801 acggggcgta taaccgtgga cgtttgcaac aacatttaga gcttgcggag gatatgcctt
    13861 attgggaata tcaacacaac gacaacgccc accctcgccc acagcacgtg gcgtgggacg
    13921 gcttggtgct gcgttatgac gatccgtttt ggaaatatca ctatccaata aaagcctacg
    13981 gttgccactg caccgtgcaa gcgttagatg attttgacct caagcacgat ggtaaaaccg
    14041 tcagcccacc acctgaaatt gagtttgaac aaaaaacggt aggcgtgcgg acaggcaatt
    14101 cacgagtcgt aactgtgccg aaaggggttg atgtgggttt tacaccgcat aattttgata
    14161 atctcaaagc cgggagagca gcaaatgtag ataagttgct aatgcaaaaa atggttaccg
    14221 ccgatcctat atttgcctcc aaagcagtca gtgatttatt ggcaaaagag ccggttgcaa
    14281 agttacataa ccaagccttt aaaaattggg taaatgatgt tgccaatgct aaaggaagtg
    14341 cattatccca agtagagaat atgcagttgt taggggtact acctgttgcg gtgattgaac
    14401 ggttacagca gatcaattta gctccgcaat ctgcaattat tgcaataaca aaaggcgata
    14461 tggtacacgc tctacgagag ctaaaacaaa ataccggtat tgccgtaccg ttggaatttt
    14521 gggaaaagtt gcctgcaaag ttacaatacc caaatgccat cttgttggaa aaacaacaag
    14581 cagaaactac attgctcttt atctatgacg tagctcaaac caaaattgcc gtaaaagtca
    14641 attatgatgc aactttacaa gatagacacg gagcaaaagg acggcagaaa gtcttactga
    14701 atcgagcggt tacaggtagt ttattccaag atacaactgg attgaaaagt tcaaagtatg
    14761 aagtgctatt gggagaaatg tagcggcgaa ggactcgaac cttataatgt aggttaaacc
    14821 tacaaccttt accaattagg aaactaccgc tacattgtgt aaattcacta tacccctaaa
    14881 ttatttttta atcaatagga gaaacaaaat ggcagaaaaa caactttcct ttaaagtagc
    14941 cgaaatagtg ccaatgtcag ctattaacac tatgcggcac ttaattagtt tggcattaca
    15001 agcgaattat gagagagaaa aatctcgtgc ttgataattt caatggcttg tagttcggga
    15061 actatattat ctgaaacaag ccattgtttt gttgatgtca gacatttagc gatgaaatcc
    15121 ataattaaac cattagcagt agctcgttgt tccggagtaa gttgtaacca cgacgcctct
    15181 gtttgttggt ctaatgtata aagaaacata acggcttctt tttctgataa tgggtcaagt
    15241 ggtaattttt cagcttttgt gactaaccat tgacgggaaa gcaataaatc ataaaccagt
    15301 tctattgctt gttctgcatt taccatcata ttctaattcc ttaatatatc agggcaacat
    15361 tacccaatct atattttact gagatttgct taatgatcaa aatcaccctc aacaacaccc
    15421 aagcggtcaa atcgttacaa caaattgcaa atcagctgga acaacctcgc cgactgtatg
    15481 gcattttagg ggaaacccta aagaaaattc acactgcacg ctttaaagcg gaacaagacc
    15541 ccgatggcaa caattggaaa ccgttagcca gtagcacgct tgctttaaaa cgtaaacgag
    15601 gtaagtccac taaaatctta cggcaagacg gctaccttgc cgataaaacg gcttacaatg
    15661 ttacaagtga taatgttgag tttggctcgc aggaagtgta tgcacggttg catcaattcg
    15721 gcggtaaagc cggacgaggc aaaaaagtga ctgtaccggc tcgcccgtgg ttaggcgtag
    15781 gcgataaaga tgagcagtta cttttacgca aagctgagtg gcatttaggg caaattatcg
    15841 gtcgtatggg aaaataaccg cttaaaatca aatttaacgc ataaaaacgc ctctgtgcgt
    15901 ttttattttt tattcgcctg attattcgac tcaaaaaatt taaacgctgt taaacgcatt
    15961 taaacggtat ttaaacggta ttgccgattg tgataaatcc tctttattaa aacaccctcg
    16021 aaaaatcttt aaaccagttt aaaagctaat ttctctccaa atccttatta ttgccccatc
    16081 acggaggcaa tatgacccaa attgaaattt ttaaagccgg taagcgttat gacgccaacg
    16141 gcacgttaat tgacattacc cctgaaatgt tgcaacagac cgttgctgcc tataaccccg
    16201 aatttcacga agctccgctg gtgatcggac acccgaaatc caacaaccct gcgtgggggt
    16261 gggtaaaagc cctttccctt gagggcgatg tactaaaagc agaagtagat cagctagacg
    16321 ctgagttttc agaaatggtg gcaagcggca aattcaaaaa agtctcggct gctttttact
    16381 tacctgatag cccgaataac ccacataaag gcgtgttatc gctacgccac gtggggtttt
    16441 taggggcaat gccaccggcg gttaaaggct taaagcaggt ggaatttgca gaagatgatg
    16501 attttgtcgt cttttctgaa tggggggttg caagtctatt tagtcgtttt cgtgattggt
    16561 tggtgagtga gttcgggctt gaaaaagccg ataaagctct tcccccacac gaaattgatt
    16621 ggctgaaaga agaggcaatg cgaagccaaa ttagcaaaca ggtacacgcc gaacaggcaa
    16681 cacctgaacc gatttttaat gaacccgcac aaccagaagg agaacctgaa atgagtgcag
    16741 aagagaagga agagcttgaa cgcttaaaag cggaaaacga gcagttgaaa gccgaaaaag
    16801 cccaagccga agcagagaaa atggaagcag agctggaagc tgaaaaagct ggtaatgcag
    16861 agttttgtga aggtttagtc aagcaaggca aacttgcccc ggtggcaaaa gcggcgtttg
    16921 tgcaggcttt aaataacctt tcagtattaa aagccggtcg tgagccggaa tttaatgagg
    16981 gcgaagatgt ggtttcacag tttaagtctg caatgtcgca atcaccacag attatccaat
    17041 ttggagaata tgccacagca gataaagcca acccacaaga agcggaagca gtggaatatg
    17101 ctgaaggcac agatccagtt tcgattgaag ccgaccaaaa agtgcgagct tatatgaaag
    17161 cccacaatgt aggctacgct gcggcattta atgcgattta tcgctaatgt ttaacccaca
    17221 actgaaaagg aatactaatg acaactcata acttacaaaa actgcgtgta caagaccccg
    17281 ttttaaccga gctggcacaa ggctatcaca ataacgagct ggttgccgag accttaatgc
    17341 cgactgtcga aatcgaaaag gaagcaggca aaatcccaac tttcgggcgt ttagctttcc
    17401 gattgccttc taccgtgcgt aacttgcgtg gttcatctaa ccgtttagat ccagaagata
    17461 ttggggcgat tgatgtggcg ttagaagaac acgatgtgga atatgccatt gattatcgtg
    17521 aagagaacga agccattttt tctttacgtc aatttgcctt aaataccacc caagatgtga
    17581 ttgcgttagg tcgtgaaaaa gcggttgcaa ccctcgcctt agatgaaagc cgttatgaaa
    17641 cagacaataa agtcacgctg tccggcacca gtcaattcag ccataaagat gctgatgtgt
    17701 ttaaggtatt tgataccgct attcgtgccg tgaagcgggc tatcggtcgt aaaccgaatg
    17761 tgtgtgtgat ttccggtgat gtgtgggcag cgttaaaaga acatccggca gtggttgaaa
    17821 agctcaaata cagtcaagta gcgattgtta cccctgaggt gtttgccaaa ctgatcggca
    17881 ttgagaccgt aaaaatcggt gaagcggtgt atgaagaaag cggtcagctc aaagatattt
    17941 ggagcaaaga tattgtggtg gcgtatgttg ctcctcgttc gaccggaggc aaaggcacgg
    18001 tttacgagcc gtcttatggt tacacggttc gccgtcaaaa aggcttattt gttgatactt
    18061 ataaagagag tggcggcaaa attgaagtgg tacgcacgac cgatattcac aaacctcatt
    18121 tagtgggtgc ggcagcaggc tatttaatta aagctgccgt ataagccaca taccataggg
    18181 tgcgtttact aacgcaccat tatctcaaac acattacata gaggaaaaaa cgatggctaa
    18241 atttattgtt ttacataccc caattttaca cgatggcaaa cgctatgagg tgggggcaga
    18301 aattgaactc accgctgaac aagctgagaa caatgcgatc aacttaaaag cggtagaagc
    18361 tgttccaaaa ccacctaaaa atgcctcaaa acctgaagat gagccaaaac ccgaaggtga
    18421 acctaagcct gaagatgcag tgacggaaga tgatgtgaag ctggctgaag caaaaattgc
    18481 agaagcagag caaccaaaag ggaataaaaa ataatgtatg tgcagattga tgagctactc
    18541 acggcgttta gtcgcaagat tgtggtgcag ctcagtaatg atgaaccgac agcgaccgag
    18601 cctgatttaa agatgcttga aacggcagtt aaagtggcaa atgagcgaat tgatgcagcg
    18661 ttacgctctc gctatacctt gccgctggct gatgtgccta cgcttattaa tcagcacgca
    18721 ttaacccttg cccgttattg gctttatgcc cgccgtcctg aaaccaaaat gccggacacc
    18781 gtgaaggaaa cctaccaaca agcggtgaaa gagttggaac agattgcaac aggcaaactg
    18841 catttaggca ttgctgaaag cagtcaaatt ttagaagacg atgttttagc cgataacagt
    18901 gaatatgaag ttcgggcgaa cgctcgcatt gataccagtc gttattaaag attatgtcag
    18961 ccacacaacc gattttagaa gatatttgcc aacacttgcg gcaagcattg cccgagtggg
    19021 aggtggaact cttcccgaat gacccaagca cctatcatct ctcgcacatt aacggtgcgg
    19081 tgttgattag ctatttggca agcaaatttg agaaacctcg cactacacaa gcggtgctgc
    19141 aggttcgcca cgttcagatt gctttaacgg tgctgacccg tgatttgcat aatgatgtcg
    19201 gggcgttgga tttgctggat aaattgcggt tattggttgt ggggtttaag cctcaaaact
    19261 gcggtgagtg ttggttgatt gatgaatttt ttaatggctc aagcgaagaa accgggcttt
    19321 ggcaatatca gttgattttg caaaccgaaa ctcagcaggt gcaacaccaa gcggtcgaaa
    19381 atctgccaaa atttgtaacc gctcatcttc gccgtcaaga ccagcctggt tcgcccggac
    19441 ttaaaactta aatcgtaggg tgcgtttgct aacgcaccat caacatcacc tgattttacg
    19501 gtgcgttggc aaacgcaccc tacaaggaga atattatgac gtttcaccac ggttctgaaa
    19561 ccgaacgagt aaacggtggc tctgtgccgg tatcggtggt tgatagtgcc attatcggca
    19621 ttgtcggtac tgccccaatc ggcgcagtta atgaattgac cgtctgttta accaaaaaag
    19681 attttgccaa attcggcacg attttaaacc aaggcttcac cttacctgat gcctttgata
    19741 ttttagctcg ttacgcagcg ggtaaagtgt atgtggtgaa tgtgcttgac ccttcccgcc
    19801 accgtactac cgtgaccgat gaagtcctca cactggatcg caatacgctg accgctcaaa
    19861 cagcgaaaac cggcattatt gcggtgacga gagtgaaaga cggtgcaaac gtgctgaatg
    19921 ctgatcggta ttcggtcgat ctgcaaaccg gcgtggtgac ctttgtctct gcaccgtctg
    19981 ccccgaaaat tagctatatc tatgctgacc cgagcaaagt gaccgaagag gacattaaag
    20041 gcggggtgga tagcttaacc ggtaaacgca aaggttttga actattgcgt gatggtttta
    20101 acctttacgg tgcggatgcc aaaatcttaa tctgtccgga atttgataaa accgcaagct
    20161 gtgccgctgc ccttgccacc cttgccgacc aactgcacgc taaggcgtat attcaactgc
    20221 cgaaagggac gagcttatca aaagctattc aaggacgtgg cccggcaggg acgattaacg
    20281 cctcggcaag caatgagaac gtacgccatt tcttcccgta tgcgttgggg tcaagcaata
    20341 ctcttgaaag ccttgcgacc cacgccgccg gtttgcgtat gttgattgat gtggagaagg
    20401 gctactggtt cagcacttcc aataaagagc tgaaaggggt gatcgggttg gaaattccgc
    20461 tgacggctcg ggtggacgat aagcaaagcg aaactaatct gctcaatgcg gtagggatta
    20521 ccaccatttt caatagtttt ggcacaggct tccgcttatg gggcaaccgt tcgtctaact
    20581 tcccgactgt gacccatatc agcaactttg aagtcgcctc tcgcacaggc gatattattg
    20641 atgaaagcat tcgccaagcc gaattgcagt ttattgattt accgattgat gatgcgttgc
    20701 tggatagctt ccttgaaacc atcgacactt tcctgcgtac gcagaaatcg ttggtaggtt
    20761 attcggtgag cttagactat gaatatgact tggttgatgc attcagccgt gggcaagtcc
    20821 cgattgtgta tgaatacact cctaaaattc cgggtgaacg tatcagcaat aaatctgtga
    20881 tgacccgtaa atacttggca aacttggtgt cgcaacgata aggggaaata aatgagtatt
    20941 gcaattaacc aaattgtaaa cggaaatgtt tacattaacg gcaacagcca aatggggcga
    21001 gtgaatgagg tcaaaatccc cgatattgag tttgaattta tcgaacacaa aggccttgga
    21061 atgcacggtg tgattaaatt acctgccggc acgaatgcga ttgaagcaga aatcacttgg
    21121 gacagttttt atccggaagt gcgtgcggta atgcttaatc cgtataaata cactcagttg
    21181 caaatccgct ctaacctgca agtgtttaac tcgcagggct tggcagccga agagccgatg
    21241 gtcaccatta tgaatgtgtc tgccggtaaa atcggcggca cagggcataa aaacaaagaa
    21301 aatgccgaat ttgccgacac gttaaatgta cattcaatta aacagaccgt tgccggtcgt
    21361 gagctgttat ttattgatgt gctggcgaat atctaccgtg tgaacggggt ggatgtgttg
    21421 caaaaattcc gcaccaatat cggttagtaa aatctttaaa gccgtttaaa atcaatttaa
    21481 acaccgttta agtaaactcc tttgtgaagt taaacaacaa ccactcacaa aggagttttt
    21541 ttatggctaa cgcagctcaa caagtattaa ccaatcttcg tgtacaaacc acttataaat
    21601 tgcaataccc tatcgcttta ccagatggta gagttattga aaccttagat gtacgtcgtc
    21661 caaaaggtaa agattttcgt ttgcttgatg aaaaagggtt tgaccctgaa aaagatggcg
    21721 taaaaattct acgcttctat attcaacagc tcaccacact tgtgccggaa gatattgatg
    21781 aactcgatgc tgccgatatt aagggcttaa ataacctatt ggaagatatg cttattgagg
    21841 gaaagtccga caaataagtg aactagatac cgtttatgct gatctcgctt ggtggtttaa
    21901 gttttcacca agcgagcttt tagaattgga tttagtggat attccgaaat gggtagaaca
    21961 gatgaacagg caaataaaag ccggttatgg gcagatttta cggtagagcc aaataaaggg
    22021 ttcggtggct aaagtaagta aaatggcgac gccccaagct agatacacac caacccacgc
    22081 caagattgtc aaaatcaatc cataaatgag tacaaaacta acgccctcgc ttaggctttg
    22141 tatagattga atcgcatcta accagtagaa gatactccaa ccgactaatg ctaccgctaa
    22201 caaccattta gcggtgcatt ctgttcttgt tacacaagcc tcgaaaccag cccactcagt
    22261 aattcgatta tttaatttag tcagcataca ccacctcctt aaactttccc tattttacgc
    22321 taaggattta accaatggca aataatttag ctatcggaat ggtaattggt gcaagcctat
    22381 catcaggttt tcacggtgct ttttcaggag caaagaaaaa gctagaacaa ttagaacagg
    22441 ctgtcgctaa aaatcagcaa agccattcta aattaggttc tgagcttact gcattgcgta
    22501 gtaaacaagc tactctctat gcagaaatga gccgagccag tagtaaaggt ggtgctgggc
    22561 ttgctcttat gcaacaggaa tataaaaaaa ttggcaaaga aattgccaat attagccgag
    22621 agcaacgcaa atggagtaca gaattagaaa aatctattgc taagcaaact aaattacgca
    22681 atgcaatgga acgtcataca caagctaaag aaaaccgaga cgagcttaaa gggaaaataa
    22741 ttggaacggt agcttctgcg gcaatgggtg tcggcgtgat gaaaacctat atggagcaag
    22801 aagaagctgc gaataatctt aaaatttcaa tgctgaaagc agatggttct ttcgggaaat
    22861 ttgaagagat tggcaagatt gctgacacat tagggacaga tttaccggga acaaaaaaag
    22921 atttctacaa gctcgcaatg gcattaaaga aacaaggtgt ttctgatgat gtgctgaccg
    22981 gaggggcatt aaaaacttct gccgaactga atgtcttgct tgatatggat caggaaagtg
    23041 gtggagagtt tttagcgaag tttatggaat ctcaccggct caatgaaaat gagttaccac
    23101 aagcagccga ttatctgcaa cgagcaatgt ttgccggcgg tttaagtaaa gagcagatgt
    23161 atgaatcgat gaaatactat gctccaaaac tgaactcaat gaaacttaca ggggctgaga
    23221 ataccgaaaa agtgctggcg attgaagcaa tggcaggtca gcaaggctta gagggttcaa
    23281 cctttggtac gggcttaaat atgatgttaa gccgtatgaa taaaggaccg gaaatgctca
    23341 aggcagcagc caaaggaatg aaagccgaag ctcgagagat gatggaggct gtcggagtag
    23401 aatttaattt ctgggataaa aacggctcat tcaaaggcat tgatggaatg ctggctgaaa
    23461 tgacgaaatt tgaaaaaatc cgcaaaaaat tcggtgacaa aggtgtaggt ttagttgcag
    23521 aagagctgtt tggcattgaa ggtgggcgtc ttgctgatat tttggctatg aaaggtcaaa
    23581 aaggcttaga tgaaatgctg agtaaaatgc gtgaacaagc cagccttcaa gatcgcatta
    23641 accttaaaac aaatacatta ggtgctgccc tagaatcttt aggaggagcg tgggaaacct
    23701 ttgtggggga tattggctct gtctttgccg aagatataaa agggttttca aaaggcttgc
    23761 aatctgcggt ggaatggctt gtgccatttg tatcaaaaca taaagaggcg attaaatttg
    23821 taggtggttt ggttgctgga cttgttattt tacgaggcgt tttacaagct ggttcttttg
    23881 ttattcaaac ggtaactatg gcaatgaacg ccctcaaaat tgcagcaatg accaatccta
    23941 ttgtcttagt cattggagca atcgcagcgg gtgcttactt gatttatagc cattgggata
    24001 gcattgcccc ttggtttgca aatctttggc aaaatgtgac cgcttacttc aatcaatttt
    24061 ggacttgggt aaaaggtgtt tggtcgggcg tgacggactg ggtgtcttct gtgtggaatg
    24121 gtgtagccac ttttttcggg cagttatgga ctacgattac tagcttattt agtgtagctt
    24181 ggacaaatat ccaaacaata tggggaggag caacagcttg gttctctggt ttatgggatg
    24241 ggattaagtc tgcggctttt ggtatgttcg acagtattag ccaaaaagtc agctctgttg
    24301 tagcaagcat taagagcttt ttaggctttg gcgatgatgt ggataaaatg ggggcaaaaa
    24361 ttggcaatgt agctacccaa gtcatcagca aagaacactc aggacaactc agcaaaaccg
    24421 cagatatggc agccaataca gggttctcta gcggtggttt caccgggcaa ggcggtaaat
    24481 atacccctgc cggtattgtg cataagggcg aatatgtgat gacgaaagaa gcgacctctc
    24541 gtttgggtgt tggaatgctg gatagcttaa actatggcgg tgctatgggt ttcactcaac
    24601 ctgttttgca accgatttta ggtaagcaaa aaggcttttt tggctcactt tgggacgatg
    24661 tgaaattcgg ggcaaacttt gtcggcaatc tgcttggctt aaatcaaggc agcctgaaaa
    24721 cgcctgattt taacccaaat gcgaccaatg caagcggtca aaattcgtcg atttttagca
    24781 attatgaacc actcaaccga aatgcggtaa cacagcagga aagctcgcaa gcaccgcaga
    24841 tagtcgtgaa ctttaacccg acaatcaatg taaacggtaa tgctacgcaa gaggctcaat
    24901 cgcaaattat gcagcagttg caaatgagtg cttatgagtt tgagaaattg ctcaatcgtg
    24961 tgctagacca acgaagccgt agagcctatt aggagtgatt tatgtatttt atgttaggca
    25021 atattgcctt tgagccggtg aatttaactg aatttagcga gcaacatacc gccgaatttg
    25081 ccgaacacgc tgtgctaaaa ggcaaacctc gtttacaagc gatgggcgaa aagctaaatg
    25141 aacttaattt ttctcttcgg ttgcaccata ccataggcgg tgtagagagc cgttatcaag
    25201 ccttgcttga agccaaagcg aagcaagcgg cattggcgtt aatttggggc agtcgttata
    25261 agggagatta tgtaattgtc gatatttcat cgaccacatt gttcaccgat ggcagaggca
    25321 atgccctcgc tcgtgaaatg caaatcagcc tgaaagagtt tgtgggcgat aatgacggtg
    25381 gtgtgttggg tgaggcgtta aattttggtg gtggctcact gcttggctct attttgccaa
    25441 gcggtgcggt aactacccta tctcaaatca aaacagcagt cagccgaggt gtggagcttt
    25501 ataacagcgg caaacgctta gttgacgaag tgcaaaatac cgtggcgatt attcggcagt
    25561 tgaaaaatga cccggcaact gcattggcat atttacccgc tgcattagcg aatttagacg
    25621 gggcattggg gcattttggt aatttgaccg gctcatcggc gaccttgggc ggtttgcagg
    25681 agaaactacc ggcagcagtg gtctttagcg aggaaatcgg cgagatttat cagagtttgc
    25741 aaacaatgcg aagcagtttg ggtaatgcct cggcaaatag ctgggataat tggtttacac
    25801 cggcagagag tgcattgaca gaggtcacag acagctttga ccatctagca aaaccggtgg
    25861 caaaaatgac cgcttggatt gtgctgcgta ccgatgagga ggcagaaaat gacacagttg
    25921 cttaaacata tcgtcaaaca gggtgagcgt tgggataact tgagctatca atactacggc
    25981 aatgcgtttg aatatggtcg aattattgat gccaatccgc atatcggttt ttgcgaggtg
    26041 ttgccgatag gggtaacaat ttatatccct gtacttaacg ttaagccaac gaataatgaa
    26101 aatatgccac cgtggctaag ggggcgtgat gcgtaatgta ccgaagcccg atttttcact
    26161 gttttatgaa aaaaccaata tcactgccga gattgagcca catttggtgc aactgaccta
    26221 tatcgaccat ttggaaggtc aatcggacga actcactgtg gaatttgaag acattcaagg
    26281 caaatggata cgccaatggt tcccgactca gggggataag ctcaaagcgg cgattggcta
    26341 tcagggcgaa tttctgacgg acatcggtga gtttgaaatt gatgaagtgg aatatagtta
    26401 taagccttcc actattaact taaaagctct aagcaccggt atcagcaaag ccaaccgtac
    26461 tttaaaaccg aaagcctatg agaatacgac tcttgctcag gtggtggcaa aggtagcaga
    26521 taacctgaaa ttaaaggtag tcggtaagat taaggctatc ccgattaaac ggatcaccca
    26581 atatcaagag cgggacgtgg agtttttggc acgccttgcc cgagagtatc atcacagctt
    26641 taaaatcgtg ggcaatcagc tggtctttac cgataaaagc gaactggggc aaagtgagcc
    26701 ggtgttaatg ttggaagaac gggatactat ttccctacgt ttgcgagatc ggattaaaga
    26761 cactgcaaag gcagtggaaa tcagcggcta tgatacaagc ggtaaaaaag tggtgaaaaa
    26821 acgcaaaaag gcaaaagcct tacgcccgaa tataaaacaa gctaaatcag ccagtgaaga
    26881 tacgctgaaa atcatcacac gaggcgaaag tcaagaacag attgatgcac ggggtgaggc
    26941 tgcgttggct acgcaaaatg aagatcaggc ggctggtgat attgagctta tcggcaatcc
    27001 taaattggtt gccggagcaa cgattttatt gcgtaacttt ggcgtgttta gtggcaagta
    27061 tctgattaaa tcatcacgcc atacgattag ccgtagcggt ggttatacta ctcatattga
    27121 ggtcagaatg ttggagttta ttgccgatga tttaatcaca ttaggtatgg aggctggcaa
    27181 tgcaaacgca taattttggg gcgacttatc aagaagggat tgtatccgct gttgatccga
    27241 aaacgcacaa agtgcggtgt aaaatccctg cgctggaaga tttagaaact gcttggctgt
    27301 cgtttttgac cccgaacgcc ggtggcaatc agttttactg tttgcccgat gtgggcgagc
    27361 tggtggcaat gctacttgat gcacaaggcg aaggtggctg tgtgtttggg gcaatttata
    27421 acgagcaaga cccgacaccg gttgccgata gcgatatgtg ggttaagaaa ttcagcaatg
    27481 gcacggagat ttcgcataat cgcaaaaccg gcgatgtggt agtgaagact aacgggcatt
    27541 taaccgcaac ggctcaaggt ggggctacga ttaatgcaaa caccgtagtc aatggcacat
    27601 tgcacgctac cggtaaaatc acctctgacg aagaagtctc tgctcctgtt gtgaaacaag
    27661 gcacggtaga gcttggcaca cataaacacg gcggtagccc tgaacctaat aagtaattct
    27721 ttaaaccagt ttaaaatccc ttttaaagat agccctgtat catcagggct atgaacagac
    27781 aaacttccat tcaattaacc cactggcaac ttgcaccctc aaccgataca gttgaggtgg
    27841 tgcaaggtat tgatgatatt catctttgta ttgtcaatat cctttcaacc caaaaaggca
    27901 cggatatttt acgccctgaa tttggctctg accactttcg ctacattgac taccctgaag
    27961 atgtggctat cccgaatttt gtacgggaaa ttacaaccgc cttgcaaaaa tgggaaaaac
    28021 gcattgaggt tgaagaagta ttggtggacg gttcagctcc gcattttatt tttactgtga
    28081 tgtggcactt aaccgatgat gtttatcgtg aaatttaccg aacaacggta taaggatagg
    28141 caatgacaga agcgattaaa atcattgatg acgatgtaaa aaccgtactt gccgaagcga
    28201 ttgccgatta tgaaaaacgc accggtaaaa tcttacaacc tgcacatatt gagcgttcca
    28261 ttattcaaac ctacgcttac cgtgagcagt tattacgcaa aggcattaat cacgcctttt
    28321 tacaaacctt tccgcagttt gcgacgggga ttgcgttgga tttgtgcggg gaaacttttg
    28381 gttgttatcg gcttagagat aaacctgccc gtactttact acgcttttca gtaagtggtg
    28441 aacatacagc tatagttatc cctaaaggaa cgcaggtggc aattaatgac gagctatact
    28501 tttcaacgct caatgacgat gttattactc cattaattac ctatgtggaa attgatgcag
    28561 agtgtaatca ggttggtgtt atcggtaatg gttgggaatc aggaagagtc agtaaactaa
    28621 aaacagcact ggcaactaat tataaagtaa cagttgaaaa cattgatatt acgagcggtg
    28681 ggttgatgca ggaagaagat gaaccttacc gtaagcgaat tttagccgca ccggaagcct
    28741 ttagtaactg tggctctatc gctgcatatg attaccacgt ccgctctgta tcccaagata
    28801 ttgcagatgt gaatatctct acgcctaggg gtggcttggt aagaattgcg gtattgaccc
    28861 aaaaagggtt accggatacc cgattacttg atgatattaa aaaacacgtt agtgccgaac
    28921 ggctacgccc actttgcgat atggtcgagg ttattaagcc cacagaacgc cgttatcaaa
    28981 ttacggcacg tttaatattg ttagatggct accgtgagga tttggtaaaa gcaaaagccc
    29041 gagaggcatt acaactctat ttgtcagaca agactaaaaa actcggttta gacattgtgc
    29101 cgtcggccat catttcagct ttaagagttg agggtgttta cgatgtgaat ttaattcagc
    29161 cagtcaaaac tattatcaac gaaacagaat gggcgaactg cacagcaatc agcgtagaag
    29221 tcgaagagga gcgtagagat ggctagcttg cactatgcgg acattattgt gcgagaccct
    29281 aaatataaag cattagcgga tttaagcaag cggttaaatt tgctcgatac ttcgcaaatt
    29341 atgactacgc tggtggattt attgggcgac gaatgtatcc cattgctggc agaaaaatgg
    29401 tcggtaaccg gctatgacgg cttattggtt gcagatagcg aaaactcaaa gcgagcctta
    29461 attaaaagag caatcgaact acatcaacta aaaggcacgc cttggtcaat tcgtgaagta
    29521 ttacgcagac taggtttcgg agaggttgag attgacgagg gactgaaaaa tcggctgtat
    29581 gaaagcactt atgtgagcgg aatccccgaa aacgaacgct gggcgcacta tgcgattagg
    29641 ttgagtaacc cgattaccaa tgagcaagct cgcaatatcc gtaaggtctt acgcaatttt
    29701 gctccggctc gttgctctct tgcagttttg gattataaag cagatccaat tcgatataac
    29761 aataaagcaa cctacaacgg cacatataac cacggttcaa gttaaggata aattatggca
    29821 ggtgtacaag aaaccgcaca gtgggaaaac cacgtttaca gaattgaaga aaatgaccca
    29881 gtccacggag gagaaaacgg tgtaaccaat aagccaatta agcacctagc aaaccgcacg
    29941 ctctatctgc gtagattgct caccgaggca ggacaacgca ttaacccgaa aaaaatcaca
    30001 gctaccagca aaaatagtaa tgatttaact gggcatactc acgagattga ccacgcaagc
    30061 ctaacgcaaa aaggcattgt gcagttaaat gcgagtatcc aatcaactag cacaactgag
    30121 tctgcaaccc cttcagcagt taaagcagcc tatgataaag cagcaacagc agaacaaaaa
    30181 gcgacattgg caaatgagaa agtcgaggcg attaaagtag gcggacgaaa cctcctcatt
    30241 caatccaaca ctccacacaa cgggaatgcg tactcagtca gatacgcatt ggctgaggct
    30301 ccgaaagtag gcgaagagat tgtagtcact ctatggggtg aactcggctc tcaacgtact
    30361 ggaattggcg tttacaactc tcaaggtgct acggagttgg caaaactggt caaaattcgt
    30421 gatggagttt atcaaggtaa aggcatttgg cgtaagccga tgagtgaggg acgagagcga
    30481 acgcctaacg acacgcacct gaatgtgtat ttttacccga aaaccgcaac agataataac
    30541 cgtattgagc gaatccagct tgagcgaggc tcaatcggta cagattggac gccaaacgag
    30601 gcagacttaa aggcagagat tagtgcaatc cgcactaaac taatccctgt acggggtggc
    30661 aatgttgcta caaccttaaa tgcggctaag cggtcggatt ggtttagaga aatgcaaatc
    30721 ccttatcaaa gtggttgggg gtattacacc caagcatttc ataactcagg gacgcaacac
    30781 aactacagca atttaccgct gacaggtcgt tattatttta tcgccgaact ctatcataac
    30841 tctggttatt ctcacttgcg tatcacctat ccaagtttaa aacgcacctt tgagagtgct
    30901 atcaacctta acaatgagga tttgattcta gattggcgtg aggtggtgtt tttaaaagat
    30961 ggattgtatc aaggcacttt taaaacaaca ggcacactag agtctgctta tcgtctaaga
    31021 gcggctcgtg atgatgaacg ttatcagcca tacctgcaaa tggtcgatat gggctatgac
    31081 cttgccaatc ccccggtagg aaaaaacaaa attattggca gtgttgatta ttacgttaaa
    31141 aacggcacaa gcgagtcttc caaagcgacg atgatggcag cggcaatgcc tgacaagaac
    31201 gtattttggg aagtagcatt gtggaatgca gcacagcaac ggaatgtatt gtttaagggg
    31261 tatagcaaga ctaacaattt gagtattggt aaaaccaccg acaatgagcg agaccgagta
    31321 caagtcaatg gcacaatcca agccaccgca ccggctgata acgccaataa cgaccaagtg
    31381 ccgactacgg cttgggtgcg taagatggca aagattttag ctgatggcaa ggtgagtaaa
    31441 gccggtgaca caatgactgg gcatttattc atcaagaatg gggaatactc tgcggtacat
    31501 acctataaca caagtggttg gttcgcaaaa tgggaggcgg ccccattatc tgattcgcac
    31561 tttgctgcca ttgtatatgc caacgacaga gagacagtta tcaatcgggt gttaattccc
    31621 aagaagaatg gcacagtcgc tttaattaat gatattgccg ataccgttag agccgctgtg
    31681 agtcgtagtg ataaatcccg tagtagaact tttcctctgc aaacggggaa aaaatataca
    31741 accacaggga gcgttacgat ttatccagat ggccgaattg tgcagatttt ccacttaaaa
    31801 aatattaaag cggcgtggtt tgattatgag gcaagtgcgg taggagatag gcatagagtt
    31861 gtcaatatcc ctctttggac tgcgatgcca aataaaattt ttgatgtcga tgttaaaact
    31921 gttcgcccct caaataatgc ctcaacttac tacatagaag cggctgaatg gctgagtgcg
    31981 tggcagattt acggtaatga cacgaacaaa tcaagtgtca atattaatct atctcgattc
    32041 agaggtggaa aggatgaaga tatggacttg tatgtaacag ttgagggata ttaaatggca
    32101 tattttgtga atgtgattga tgagcaaggc aattatgagc taattgatga tgagtttatt
    32161 gggctgtatc cggatttgga ttttaacaca ttacccaaac tcacggataa gcaatatcag
    32221 acctaccttg ccaaagcaaa cggcaaagag cgatttgtaa atggcgaatt tgtgtatgag
    32281 caaattaagg tggatatgca agcggtcatt tccgctgaaa aatctgcaaa gttagcagag
    32341 attaaccaaa aagcacaagc ctttatcaat gatttagcca aatacaacga aacgcctaag
    32401 tttgagcgtg atacttggct tgagcaagcg aaagaggcaa aagcgtgggt ggctgaccca
    32461 accgtacaaa cgccaaccct tgagttaatt gcgcaaatgc gaggcatacc gctcgacacg
    32521 ctacgccaaa aagcctacga aaaagcgatg gcgtatcaaa cggtggctgc tattgtagca
    32581 gggcaacggc aaggatacga agaccgccta gaacaagcgg aaaccttaga gcaaatacag
    32641 gcgattgagc cgatgtatca attaccgcaa ggagcaaaca atgagcaaac tgactaaatt
    32701 aaaatcgtgg agctaccacg tcttaattgc aatagatcaa ctctttaacg ctctcaccgg
    32761 tggagcagcg gacgaaacat tttctagccg ttgctaccgt ggtgcagtgc ttgcggaaaa
    32821 tccgaaaaaa cgttggcgtt tttggcactc ttttttgaat tgcttatttt tagacccaaa
    32881 gcactgctac gccgcttata aagcggaggt acaccgcaag cagtatccga aggcatttag
    32941 acttgggggg atttaatgaa aaagcaaaac ttaaaattag tgcggggcga tgatgtgagt
    33001 tttagattca gcattaaaga cagcaccgga caacctcttg cgttaaagga tttgtggttt
    33061 gatttgcact tagtcagcta tcaaggtgag gtgctgattg ctctctctac tgatgatggc
    33121 agtattgaga cagcagaggc tggtcagatg gtgttacatt ttagtcacca gcaaactgct
    33181 cgagctgaat ggacaagtgc caattatgac ttgcaactca cgcacgacta tacaagagtc
    33241 taggaggtgg agatgacctc tatcattgaa ctagacctga ctgatgacct catcattgag
    33301 gtgcagttag atagcacaat cattaccggc gatagctttt tagccaacct gccggattta
    33361 ctccaaattt acaaccaagc aaagtcagat agcagtaagg agcttaacaa tgactaaaca
    33421 caaaaaccac gaaaaccacc cgattgctat aacattctac caacttggca aagatgtcgg
    33481 cgacattaac cgccggctag cggttattga gcaacgtgag caatcagcac agccaagcca
    33541 accacaagct gaggcggtta caatgccaca gcaagatgct gttgccatta ataacatcaa
    33601 tgccgttttg gaggcggtcg aaaaatacaa aacttttgaa aaatacaaca ctcagtggca
    33661 agagcgtttt gaaaaattcc tgtctcgtaa cccgaatgat tacgagttaa gtgaagagca
    33721 acgccaaaaa ctttaccaca cgatgtgcca gcatttgtgg caggtgaact ttactgaaat
    33781 caatagtaaa cagtatgaat taccgatccc gcaacaattc cagggtaagt ttggctatat
    33841 tgtcaaaacc tcgggcggta gcacagaaat tagttttgag ttgctatctg aaactcacag
    33901 cacttatctt tatccggata gctatattcc cgagggcggt ggcgatgtaa tgctcaagcc
    33961 ggcttatatt tatttagtga ttccggactt agtggcaatg cgtgagccgg aggtggtggg
    34021 ggtttcaccg ctgaaactga acattctgca gaaacacctg ctgacacctc agaaactaca
    34081 ggagcagaag cccttgaaca cgaaggcaaa ctgattgatg gcgtatggca ttttgagcga
    34141 gagccggtaa atccaccgag agatcagaat tattatgtgg caggtaacct gttctacaac
    34201 ggcataccgg attgataaat tgatgtttca gtaaacctaa ttagggggga atcccccttt
    34261 tttattatta taaggaaaga aaatgaataa atctttagta gcgttagctg ttgcagcgat
    34321 ggcatcgaaa gcacaaacta aa
//
LOCUS       DANLXK010000012        34291 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.012, whole genome shotgun sequence.
ACCESSION   DANLXK010000012 DANLXK010000000
VERSION     DANLXK010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34291
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(281..1414)
                     /locus_tag="PXD88_000486"
     CDS             complement(281..1414)
                     /locus_tag="PXD88_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL6280100.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1431..2243)
                     /gene="dapB"
                     /locus_tag="PXD88_000487"
     CDS             complement(1431..2243)
                     /gene="dapB"
                     /locus_tag="PXD88_000487"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL6280101.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2294..2671)
                     /locus_tag="PXD88_000488"
     CDS             complement(2294..2671)
                     /locus_tag="PXD88_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280102.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(2661..3134)
                     /locus_tag="PXD88_000489"
     CDS             complement(2661..3134)
                     /locus_tag="PXD88_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280103.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3202..4290)
                     /gene="rlmM"
                     /locus_tag="PXD88_000490"
     CDS             complement(3202..4290)
                     /gene="rlmM"
                     /locus_tag="PXD88_000490"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL6280104.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4290..4682)
                     /locus_tag="PXD88_000491"
     CDS             complement(4290..4682)
                     /locus_tag="PXD88_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL6280105.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(4789..6190)
                     /locus_tag="PXD88_000492"
                     /pseudo
     CDS             complement(4789..6190)
                     /locus_tag="PXD88_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6345..8702)
                     /locus_tag="PXD88_000493"
     CDS             complement(6345..8702)
                     /locus_tag="PXD88_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL6280106.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(8838..11444)
                     /gene="acnB"
                     /locus_tag="PXD88_000494"
     CDS             complement(8838..11444)
                     /gene="acnB"
                     /locus_tag="PXD88_000494"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL6280107.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(11464..12711)
                     /gene="icd"
                     /locus_tag="PXD88_000495"
     CDS             complement(11464..12711)
                     /gene="icd"
                     /locus_tag="PXD88_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL6280108.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            12945..14225
                     /locus_tag="PXD88_000496"
     CDS             12945..14225
                     /locus_tag="PXD88_000496"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL6280109.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(14298..15527)
                     /locus_tag="PXD88_000497"
     CDS             complement(14298..15527)
                     /locus_tag="PXD88_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280110.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(15494..16483)
                     /locus_tag="PXD88_000498"
     CDS             complement(15494..16483)
                     /locus_tag="PXD88_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6280111.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVTLWPVPSRTIKTQTTE
                     ALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIVIVSTIQNFRVENQDG
                     RKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQTGKIKCSFANLLRAYQ
                     PLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGSNVLYHVSASHLKAEE
                     MIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIYCFKLSRKTAK"
     gene            complement(16499..17017)
                     /locus_tag="PXD88_000499"
     CDS             complement(16499..17017)
                     /locus_tag="PXD88_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6280112.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            complement(17027..17098)
                     /locus_tag="PXD88_000500"
                     /pseudo
     CDS             complement(17027..17098)
                     /locus_tag="PXD88_000500"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(17105..18172)
                     /locus_tag="PXD88_000501"
     CDS             complement(17105..18172)
                     /locus_tag="PXD88_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6280113.1"
                     /translation="MTTLTWYGKEEAVKKAKQTPYCLLRELPDFSHNIARQPTADSRQ
                     PTADSSASAETLSKVKQNLIIQGDNLSALKSLLPFYAGQVKCIFIDPPYNTKSAFTHY
                     DDNLEHSIWLSMMYPRLEILRELLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISN
                     LIWEKKRKPSFLGKVGKVTDNLFCYAKNKNELNELNDLTYLETSGDETYPLYNAGNSR
                     EILVFPPRSIKFKKHSDGLYKPTIFSKKTSSITLISELIIEDQWNKNTVEIEGEWRYS
                     QKSIDEQLKNGDYYIIKSLDFRPRRVFERSAEKKKIHNLISRAHYDMATNEDSASEHL
                     ELFGEDIAEDSFDYPKPEKLI"
     gene            complement(18313..20799)
                     /gene="torA"
                     /locus_tag="PXD88_000502"
     CDS             complement(18313..20799)
                     /gene="torA"
                     /locus_tag="PXD88_000502"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL6280114.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(20818..21014)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(21018..22133)
                     /locus_tag="PXD88_000503"
     CDS             complement(21018..22133)
                     /locus_tag="PXD88_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL6280115.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     gene            complement(22275..24026)
                     /locus_tag="PXD88_000504"
     CDS             complement(22275..24026)
                     /locus_tag="PXD88_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6280116.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      24190..24346
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            24335..25360
                     /gene="moaA"
                     /locus_tag="PXD88_000505"
     CDS             24335..25360
                     /gene="moaA"
                     /locus_tag="PXD88_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL6280117.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            25861..26337
                     /gene="moaC"
                     /locus_tag="PXD88_000506"
     CDS             25861..26337
                     /gene="moaC"
                     /locus_tag="PXD88_000506"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL6280118.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            26330..26575
                     /gene="moaD"
                     /locus_tag="PXD88_000507"
     CDS             26330..26575
                     /gene="moaD"
                     /locus_tag="PXD88_000507"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL6280119.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            26577..27032
                     /gene="moaE"
                     /locus_tag="PXD88_000508"
     CDS             26577..27032
                     /gene="moaE"
                     /locus_tag="PXD88_000508"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL6280120.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            27065..27547
                     /gene="ybeY"
                     /locus_tag="PXD88_000509"
     CDS             27065..27547
                     /gene="ybeY"
                     /locus_tag="PXD88_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL6280121.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            27625..29643
                     /locus_tag="PXD88_000510"
     CDS             27625..29643
                     /locus_tag="PXD88_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL6280122.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLVLQNLNNKSFKIIYRFYYIFLCFCSC"
     gene            29708..30898
                     /locus_tag="PXD88_000511"
     CDS             29708..30898
                     /locus_tag="PXD88_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL6280123.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(31005..32306)
                     /gene="folC"
                     /locus_tag="PXD88_000512"
     CDS             complement(31005..32306)
                     /gene="folC"
                     /locus_tag="PXD88_000512"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL6280124.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(32316..33212)
                     /gene="accD"
                     /locus_tag="PXD88_000513"
     CDS             complement(32316..33212)
                     /gene="accD"
                     /locus_tag="PXD88_000513"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL6280125.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            33521..34291
                     /gene="mazG"
                     /locus_tag="PXD88_000514"
                     /pseudo
     CDS             33521..34291
                     /gene="mazG"
                     /locus_tag="PXD88_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600778.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
BASE COUNT         9954 a         7453 c         6733 g        10151 t
ORIGIN      
        1 ttcgtatgag tgtaatgtgt ggctaaaaaa tttgaacaaa cgaagcgaca gcgttagcaa
       61 aaacttaaaa tgatgtacgg atttaaaaat ctgttcgttt gcttgtttta taagcaaact
      121 aatttcgcat aattattatt atgttaaata gatagttaaa ataacacatt taattaaatc
      181 ttttcgtgtt tctctcctcc tttattaaaa aagaaaacgg tcagattggt aaaatctata
      241 cctaatatga ccgcttgtga atacaaaaaa attacttcaa ttacttcaac tgtttaaagg
      301 cttgcagtaa atcagcttta atatcttcaa cgtgttctaa accaacggaa aaacgcagta
      361 aattattcgt aatgcctcgt gtaatacgtt ctgcttccgg aatatccata tgggtttgtg
      421 ttgcaggata agtaataaaa ctttctgcac cgcctaaact ttccgcaaag gtaatcaatt
      481 taattgcctt gagaaatttc gctacccact cttctttttg taaacggaaa gataacatac
      541 cacttttgcc tgaatataac acgctgtcaa tttcaggttg ctctgctaag aatttagcca
      601 gttcggtggc attagactga tggcgttcca ttcgtaatgc caaggttttc ataccacgca
      661 cggcaaggta agaatcaaat ggcgacagca ctgcaccggc acagttttgg aaatagaata
      721 aacgctcggt caaattctgc ccgtttactt tggtagcatc agaatctttc gcaacaatta
      781 agccggctaa cacatcatta tgccccgaaa gatacttggt cgcactgtga atcacaatat
      841 cagctccgtg ctcaatcgga cggaataacg ctggggttaa gaacgtatta tcaacgatca
      901 acattaaatt gtgttttttc gcaattttag caatggcagc aacgtcgcac tcctccatca
      961 atggatttga cggcgtttcc acgaaaatcg ccttagtatt cggtgtaata gctgcttcaa
     1021 tcgctgctaa atccgctgta ttaacataaa ccggctttaa tgtgccgtga tttttgtggc
     1081 taaaatcaaa caagcggtaa gaaccaccat aaacatcgct ggaaataatc cattcatcag
     1141 gtgctttaaa taatgacatt actagctgaa tcgctgccat tccagatgcc atcgcaaaac
     1201 cggcatcacc gccttctaaa tccgcaatcc cctgctctaa tacagctcga gttgggtttt
     1261 tggtacgggt gtaatcccag ccggtagatt cgcctaagcc atcacgcccg taagcagttg
     1321 ataagataat cggcattgcc accgcccctg tacgaggatc agttctgtta ccgatttgca
     1381 ctaatgtggt ttcaatatta ttgaattttg tcattgttat tatccttcaa ttacagatta
     1441 tttagatcca atacgtctgt catatcaaac aagccatttt gtttgccatt taaccatttt
     1501 gcagcacgca ctgcgccatt ggcaaacgtc attcgactag aggctttatg tgcgatttcg
     1561 acacgttcgc cttcatcagc gaaccataca ctatgctccc ctacaacatc accggcacga
     1621 atagtagcaa agccgatttc atcacgtttg cgttcgcctg taataccgtt acgttcaaat
     1681 acgccatgag ttttcaagtc acgcccaaga gttttggcaa tatgttctcc cattgataaa
     1741 gccgtacctg atggtgcatc aactttatgg cgatggtgtg cctcaatcac ttcaatatca
     1801 caataatcgc ccattacttt tgctgctttt tcgagcagtt taaacaccag attcacccca
     1861 acgctgtagt ttgaggcaaa aacgataccg attttttcac tcgctgcttt gattgcagct
     1921 ttacctgcat catcaaaacc ggttgtgcca atcaccattt gtttatgatg agccacacaa
     1981 atatccaaat gttctagcgt gccttcaggg cgagtaaaat caattagtaa atcaaaacct
     2041 gctacatttt gggcgacatc atcagaaatc accacaccta atgtaccaac cccggctact
     2101 tcaccagcat cactacctac taatgatgaa cctttacgct caaaagcaga ccctaattct
     2161 acgccttgtg cattatggac ggcttgaatt aattgacgcc ccattcgccc accggcaccg
     2221 acgattccaa tttttaatgt catatttgtt cttccttttt atatttgttt tttacaagcg
     2281 gttacatttt taattaattt tgcaaatagc tttctgatgg caatttaaaa ggtgggtgag
     2341 aagtaaaatc aacaatttga ataaagtttt cacctttcac ataatgtaaa atatactcag
     2401 aagtataatt accaaatcct tgactggtat catattctgg aatgccgata tgataatgcc
     2461 ataaagaata tttttgtgct ttagccacct tctctgccca ataaggatca ttcgttggca
     2521 catcatcaga acttttattt cgaccagcta gattttccaa tccataaatt tcaacgtgtt
     2581 gtttaaactg caggattttg actagatctt tttcaggcaa atattgcaat tcggctgaaa
     2641 tttttgtacc aaataaaact ttaatgccca tttgcaacac ctttcaacca gtttctaaat
     2701 tcattaacat tcgttatatc tttaggcact tcgtgaaaag tatcatttaa ccgctctttc
     2761 attcgctcta agtcaaaatt aaatgcggtt gcttgagaga gttgctgttc aattttgcga
     2821 atattggact tcatattatc caatatagcc attgtccttg agccatcagt aaaatactgt
     2881 tgggtatcga aaatcaccac cttattttga tttaggtatt ttttgaaatc gtttaaatca
     2941 atttcagccc aaaagtttgg atttttttcg atagtttcaa tacaggcaat taataattga
     3001 tttgccattg taatacgaaa atttaacaat gagatttgct gctctgttgc aggtttatca
     3061 tcagctgcga aatcaaatgc cggataaatc actgcaagcg tgtcagccat agataagggt
     3121 aaatttttca tcatctctcc ttacggaaga agttgtcatt atctactgga ttacttaaaa
     3181 aaacaactta ttcattttat gctatttttg ccccatcacc gcaatatgta ccgtaatttc
     3241 ctcacggtcg tggtagaggt gtttagcttg cattttgaac caaaacccgt gtttcgttag
     3301 ctcttcttcc aagaaattga ggcatagttg cacttcttga taacgttttt tcatcggcag
     3361 ttttaggttg aaaatcgttt ctcgacacca accgttagtc agccattttg caatgagttt
     3421 cgagatacga atcggctgct ctaccatatc acaaaccagc caatcgattt gtttacgctt
     3481 aggcggttgg aatttaaacc catcttcagg gcaatgctca attcttccgg tttcgtgtaa
     3541 acttgctgcc attttgccgt gatcgactgc atagacaaaa acaccacgtt tgactaattg
     3601 ataagtccaa ccacccggac aagccccaag atcgacccct accatcgtat cattaaagcg
     3661 ttttttctcc tctgcttgcg gaataaaagt taaaatcgcc tcttctaatt taagcgttga
     3721 gcgactaggt gcctcagccg ggaattttaa acggggaatc cccataaaaa acggcgattt
     3781 attatggttg tacgcatagc ccacatagca agctcccgga cgagtaaata aaatatgcaa
     3841 gctcacacta ccctgcatat tttccgattt ccccaaccaa ccttgttttt tcaatgccga
     3901 ccgtaatggc acagtaaatt tacgacagaa agttaataat tctttcgctt cgttggtatc
     3961 cggtgtttcg acaaatacat cagaactttg gcgaggatta agttcggcat attgggctaa
     4021 aatcggcgaa attcgatcat tttcagacag attttgcaac aaatccccaa caaccaacat
     4081 ttggcgaaca aaaataagct gttcaaactt taacgcttgg gctaatcgat ctgcttcccc
     4141 tgcttgatag cactcaaaaa tcacatagcc actattttct ttaaggttgg caaagccaaa
     4201 aatgccctgt tgtgcagctt tatccgtgat ttcgcctgct acctcttttt caaaccctgc
     4261 tcggcaatat aaggctaatt tattgaacat taggcttttc tcacactgat ataaattaac
     4321 gcaatccaac caagcataaa gcagagacca ccaataggcg taagccaatg aatagtcggc
     4381 acatttaacg ccagtaagta caggttgcca ctaaaaagca gaatgcctaa cgcccaattg
     4441 cttccgatga tgttaaaggc tttggctcta caaacgggtg gattttgccc aaaatttgca
     4501 atttggaata aacctaaagc taaaatggca agggtgtgaa acatttgata tttaatcccc
     4561 gtctcaatcc agcctaaggc tttaggcgat aattgagccg ataatgcgtg gctggctatc
     4621 gccccaaatg ccacagtaaa taagccgctg aatgcggcaa ttgctacaaa tttgtttttc
     4681 ataagttgaa gataggtatg atgttagatg gcttactata tcatattatc gaaaccaaca
     4741 agcggtgaaa ttttgcaaaa aaattacaaa aaatcaccgt ttgtatgctt aatggttcaa
     4801 gataatatcc acatcttccg atttatcgtg aaccccaaat ctatctacta aggttttgct
     4861 ggcctcattt aatccgataa tttctacctc aacatcactt tttcgatatt tcaacacaac
     4921 tttatctaac gctgaaactg ccgttacgtc ccaaaagtga gcgtgggtta aatcaatgtg
     4981 gacttttttc agttctgaac gggtaaaatc aaattgtgcg ataaaatcat cagatgaggc
     5041 aaaaaatact tgcccgataa catcataacg caattcctct ttctctatag cacttgtttt
     5101 aaccgccata taacgtccaa ttttattcgc aaagaataat gccgagagca acacgccgga
     5161 aaatacacca agggctaagt tatgtgtata aaccacaatt gcaacagtga ctaacatcac
     5221 tacattaaag ccgattgggt gcgtttttag ctcttttaag gaatgccaat taaaggtgcc
     5281 gatagagacc ataatcatca ctgcaactaa tgcagccatc ggaatcactc tcaaaatatc
     5341 gctcaaaaag accacaaaaa tcagtaataa tattggcaat gccctgccct ttacattcac
     5401 ggtttttatc gctgtctgtc tctgtcattt catcaacaat cgttgccgtc attaaagatt
     5461 ccaataaccc tactgcggcc aagctgaaag aataaggcaa aataatccat aaggtgtcta
     5521 aattaagcgg aatatcgggt aataaaaaca ccggtaaggt atcgggtaat tgccccatat
     5581 ccccaacggt acgaacatca atgccttgcc ataatgtgaa aagtgttaaa gcaataatgg
     5641 tcactaatgg tgagggaatg atttttccaa tcaccggtac ataaggaaaa agataaatga
     5701 tagcaagccc tgctaccacc agtgcataag tatgccaagt tgtattttgt aactcaggta
     5761 gttgtgccat aaaaattaaa atggcaagtg cattaacaaa cccaatcact acggctcgtg
     5821 ccacaaaccg cataagcgag ccgagtttta accaaccggc aataatttgc aacacgcctg
     5881 ttaataaggt ggccgctagc atatattgta aaccgtgatc cctcactaag cctgctaata
     5941 ccagagccat tgcaccggtt gctgcagaaa tcatcgccgg tctgccgccc acaaaactga
     6001 taattactgc aatacaaaat gaggcatata aaccaatttg tggatcaacc cctgcaataa
     6061 ttgaaaatgc tatggcttct ggaattaacg ccaaagccac cactaaacca gagagaacat
     6121 cacctcgtac atttgaaaac cattgttgtt taattaccgt aggcgaaaat tgctgaaata
     6181 aagttgtcat tattaccctt aaataaaaag aaaagccgag caaagtcggc taaaaatgag
     6241 gcgagagagt agcaaattag tgaaaagtcg tcaaataaac aagcggtctt ctttcgctct
     6301 ttttttgcaa aaaatagtag aaaaatgacc gcttggatta attgctattc actaaaaaaa
     6361 ggggctttaa acaccgtcac ttcaggtgca tctcccacat atttttccac ttgaaccgtg
     6421 gtagtgttcg gtgcattgcc ctgcccgagt tttgatgaac cctcattacg ggttagcaca
     6481 ttcgggttgc cgtttttgca tagtggagta tctgttttgc ctaaatcttg cgggtcatac
     6541 caaccacctt cgtataacgc tactgtgcct tgaatgatgc catcagtcac cactgctcct
     6601 gccaacacct gccctcgctt gttaaaaatt cgcacaatat caccgcttgt aatgcctctg
     6661 tcagcggcat cttttgtgtg aattagcatt ggttctctgc cgtttacctc gtaatattga
     6721 cgtaatgagg agtaagcaag ctggctgtgt aaacggtatt taatatgcgg tgtaactaat
     6781 gccaacggct cggcttcgtt ggttttgcct gaatattcgt gatgttcaaa ccaagtcggg
     6841 tgtcctttac aatcttcata attcatcttg gcaatggttt cggagaaaat ctcaattttg
     6901 cctgatggcg ttgccaattt gtgtttaatc ggatcagtac gataatcttg atagcgaacg
     6961 aaagtattat tttgatgttc tgcctcaaag ctcaacactt tattttccgc ccaaaatgcc
     7021 tcgaaatcca gcaatggcgt attagctttt tcccccgcct caaaggcaac ttggtaaaat
     7081 tccttaagcc attccatttc gcttttgcct tcggtaaatg cttgttcttt accggctcgt
     7141 ttcgctaatt cggcaaaaat atcgtaatca ttcttcgcct caaattgcgg ttcaaccacc
     7201 tgtttcatcg ggataatatg ttttgctaca taatcaccgg caacggtgag atcgtttcgc
     7261 tcgtagctgg tggttgcggg caatacaata tctgccattc gagcggtcgg tgtccagtaa
     7321 cattcattga cgatcatcgt ttccggctgt tgccacgctt tcactaaata gttggtatcc
     7381 gggtggtgag caaacggatt accccccgcc caatagacta atttgatgtt cgggtaatgt
     7441 aatgtttgcc cgttgtaatc ataaggctga ttcggtttga gcaacgcatc ggcaattcga
     7501 gacaccggga aaaacggcat atcggggtta ggtttacctg cattgattgc ccctaaacga
     7561 acaccggaat taacatttag cccattggta gaataacgat aatttaagcc gaaaccgccg
     7621 cccggcaagc caatttgccc gagcatagcg gcaagagtca ctaacgccca gtggctttgc
     7681 tccccgtgtt gcaggcgttg caagccccag ccggacatca acattgtgcg gtgagtaaca
     7741 aaatcatttg ctaaggtttt aatcacctcc tccggaatgt cacaaatttg gctcgcccac
     7801 tctgctgttt taggtaaatt atctgctttt cctaacacat aatcagcaaa ttgctcgaaa
     7861 ccaacagtat atttagttaa gaagtcgtga tcgtgcttgt tttcagtaat aagggtgtgg
     7921 gcgatcccta aaatcagtgc aacatccgtg ccggtattaa taggcaacca ctctgcctct
     7981 aaaaattgac aggtctcgct tttcaccggg tcgatacaaa taatccgttt accgcttgct
     8041 tttaatttgg cgagataatc aatcccctcc ggttcggcag aggtccacgc aatgcgaagt
     8101 gtattcagtg gattagacga ccaaattacc aataattctg tgctttctac aattgtgtgc
     8161 caactggttt gttgagcata cacctcaata ttgcctaata cataaggcat aatcacttgc
     8221 accgcaccgg tggaataatc gcctttagta ttggtaaagc cgcctgtgac gtttaaataa
     8281 cgttgcaaaa gcgtgcgaga ggcgtgcagt gaaccactgc tataccagcc gtaagaaccg
     8341 ccgaaaatgg attcgctgcc atattgctct cttacccgtt ggatttcgcc ggaaaccagc
     8401 tcaaaggctt tgtcccaaga gattctcacc cacttatctc gccctcgcaa agtggtgtct
     8461 ttattccctt ccaagtagcc tttccgcacc atcggatatt tcacccgaac cgggctatag
     8521 agctgatccg ccaccacatc ttgcaattcg ttttggtgat ttttcgctaa actgccctct
     8581 gatttcacca cttttccgtt ttccaccgtt acatttaatg caccccagtg ggcggcggtg
     8641 gtaatggtat ttttcggttt atccaaaaag acaaacttcc ctttttctaa tgctgtgttc
     8701 atttaaatta atgccttttc tgttacaaaa ttgagaggaa tttactggat taagccaaaa
     8761 gttgcaacca caagcggttg tttttagcca aaaatttgca aaacaaaacc cacctaaaaa
     8821 ggtgggcttc aaggaagtta aacggcaact tgaacgatta cattgtccgc ttttttcaca
     8881 taactattga tttggtcaaa gttcatatag cggtaaatat cgtccttatc tttctgcaag
     8941 ttattcatat agtctaggta ctcttgcggt gtcggcaatt tacccaataa cgcagaaact
     9001 gcggctaatt ctgctgaggc taaatacaca tttgcccctt gccctaaacg gttcgggaag
     9061 tttcgggtag aggtagaaac cacattagca ttatttgcca ctcgggcttg gttacccata
     9121 cagagagaac agcccggcat ctctaccctt gctccgcttt tgccgtaaat gctgtaatag
     9181 ccctcttcgg tcagcaagcc tgcgtccatt ttagtcggcg gagcaatcca taatttagtc
     9241 ggcaattcgc cctgtgcttg gcttaacagt ttacctgccg cacggaaatg cccgatatta
     9301 gtcatacaag aaccaataaa gacttcatca attttatcgc cctgtacttg agaaagcagg
     9361 cgagcatcgt cagggtcatt cggtacgcac acaatcggct ctttgatttc atctaagttg
     9421 atctcaatca ctgcggcata ctccgcattt tcgtctgcct ctaaaagctc cggattatcc
     9481 aaccacgctt gcatattggc gatacggcgt tctagcgtgc gtttatcgtc atagccttcc
     9541 gcaatcatcc attttaaaag cgtaatatta gaattcagat actcgataat cggctctttg
     9601 ttgagcttga tggtacaggc tgcagcagag cgttcagcag aagcatcaga aagctcgaag
     9661 gcttgttcga ttttcagatc ttccaaccct tcaatttcta aaattcgacc ggagaaaata
     9721 tttttcttac cttttttctc caccgtcagc aagccttgct gaatggcata atacggaata
     9781 gcgtgaacca gatcccgtaa ggtaatgccc ggttgcattg tgccggaaaa acgcaccaag
     9841 accgattccg gcatatctaa cggcatcacc cctgttgccg cagcaaaggc aactaagccc
     9901 gaaccggcag ggaatgaaat cccgattggg aaacgggtgt gggaatcgcc gcctgtaccg
     9961 acagtatccg gcaataacat acggtttagc caagagtgaa tcacgccatc acccgggcga
    10021 agtgacacac cgccacggtt cataataaaa tcaggcaaag tgtggtgggt aattacgtcc
    10081 accggtttcg ggtaagcggc agtatggcag aacgattgca tcacaagatc tgccgagaag
    10141 cctaaacagg ctaaatcttt cagctcatct cttgtcattg gtcctgtggt atcttgtgaa
    10201 ccgacagacg tcattcgagg ctcgcaatat tgccccggtc gaacgccttc tacgccacaa
    10261 gctcgcccta ccattttttg agcaagggtg tagcctttgt tactctctga aaccgactgc
    10321 ggtttaataa atacatcact ttcaggcaag ccaagtgcta ctctggcttt atgggtcaaa
    10381 ccacgtccga taatcagcgg aattcgcccg cctgcacgca cttcatcaag caatacttcg
    10441 gtttttagct caaattcggc taagacttca tcggagttgt gtttgcaaat tttgcctgca
    10501 taagggtaaa tgtcgattac atcgcccata ttcaggttgg ttacatccac ttcgatcggt
    10561 aaagaaccgg catcttctaa tgtgttaaag aaaatcgggg caattttacc gcctaacacc
    10621 accccaccgg cacgtttgtt tggaatgtaa ggaatatctt cccccataaa ccaaagcacg
    10681 gagttggttg cggatttacg agaagagccg gtgccgacta catcaccgac ataggctaac
    10741 gggaaacctt tttcttttaa tgcttccagt tgcttaatcg ggccggtatg accgttttca
    10801 tcggggaaaa taccgtcacg ttcatttttc agcattgcta atgcgtgaag tggaatatca
    10861 gggcgagacc aagcgtcttg agccggggaa agatcatcgg tattggtttc gcctgtgact
    10921 ttaaataccg ttaccgttaa tttttcggca agtttcgggc gagaggtaaa ccaatcggca
    10981 ttcgcccaag attccaatac ttgttgtgca aacggattac cctgatctgc ccgttctttt
    11041 acatcgtgga aattatcaaa catcaataat gttttagata aggcttctac cgcaatcggt
    11101 gcaagctcag ggttatccaa cgcagacaat aaggtttcaa tgttataacc accttgcatt
    11161 gtgccgagta atttcactgc gtgagcaggc gaaatgagcg gcgatgtggc aacccctttg
    11221 gtaatatcgg ctaaaaaggc ggctttaaca taagcggctt catcaacacc tgccggaata
    11281 cgattggtaa aaagatccaa taaaaagacc gcttgttcag ccggtgggtt tttcaataat
    11341 tcaaccagtt gagccgtttg ttccgcagaa agtggctgag gcacaacacc cagtgccgca
    11401 cgttcatcaa cctgttgttg ataattttct ataaaatttt ccatcatcat tccctctcca
    11461 actttacata ttggcaataa tgtcttgtgc aaattctgag gttgagcgta gagttacccc
    11521 ctccagcatt tccgcaaaat caaaggtgac agttttattg gcaatggttt tagacaccgc
    11581 ttttaccact aaatcagccg cttcaaccca acctaaatgg cgtaacatca tttccccact
    11641 taaaattaat gacccaggat tgcctttatt ttgccctgca attttagggg ctgtgccgtg
    11701 tgtggcttca aaaatagccg cttcaaaccc aatattcgct cccggtgaaa taccgattcc
    11761 gcctacttgt gcggctaaag catcagaaat atagtcgccg tttaggttca gtgtagcaat
    11821 cacatcatat tcggttgggt gtaacaagat ttcttgtaaa aaggcatcgg caatgctgtc
    11881 ttttataatg atttcctcac cggttttcgg attagtcaag ctcatccaag ggcctttatc
    11941 aattaatttt gccccaaatt cttccgcaac ttggtagccc cactctttaa atgctccttc
    12001 ggtaaatttc ataatgttac ctttatgcac aagcgtgagc gatttacggt tgttatcaat
    12061 tacatattgc aatgcagcac gcaccaagcg ttgtgtgcct tgcttagaaa ccggcttaat
    12121 tccgataccg caatcttcgg taaagcggat ttttttcacg cccatctctt gttgtaaaaa
    12181 ttcgatcact ttattggctt caggcgaacc ggcaacccat tctacaccgg cataaatatc
    12241 ttccgagttt tcacggaaaa tcaccatatc caccagctca gggtgtttaa ccgggcttgg
    12301 cgtaccgtca taataacgaa ttgggcgtaa gcagttgtat aaatctaatc cttgacgcat
    12361 cgccacattt aaagaacgaa taccgccacc caccggtgtc attaaaggac ctttaatcgc
    12421 cacgtgatat tggcggataa gctctaaggt ttcatccggc aaccaagtgt tctcaccata
    12481 taatttattc gccttttcgc ctgcgtaaat ttccatccaa gcaatttttc gcttgccttg
    12541 ataggctttt tctaccgccg catctagcac tgctttcatt gcaggagtaa catcaacacc
    12601 gatgccgtca ccttcaataa atggaataat cggattatcc ggaacttgta aagaaccgtc
    12661 ttggttcagt tgaatagttt cgccttgtgg aatttggact tgtgtttgca ttgattttac
    12721 ccccgtaatg acgaaaaagt agtgacgaaa aatgaatgtt gacaatcagc caacaatgga
    12781 ttaactataa acagtaaatt tctaaatgta aataaagcaa aatgggctga gagagaattt
    12841 gtgatctaac gcacatttat gtaaataaaa tgtaaaaaat cgttgtgatt cttttggaaa
    12901 tcatctagtt tatcttataa atctcaaata aataggagta agctatgtca aaagcaacat
    12961 taacactcga aacaggtgaa aaacttgaac tcaatatgca aaaaggaacc ttagggtatc
    13021 aaacgattga tattcagcct ttcttaaagc ataagttatt tgcttatgat cccggattgg
    13081 tttcgaccgc tgtatgccga tccaatatca cttatgttga tggcgatgaa ggggttttac
    13141 tctatcgagg ctacccgatt gaccaattag ccaaacattc tgattactta gaagtcggtt
    13201 atatgctgtt attcggcgaa cgccctacca aagaagaata caaagacttc gttcaactca
    13261 tcaaaaaaca cactcttgta cacgaacaac taaccaaatt cttctccggt ttccgccgag
    13321 attcgcaccc aatggcggtg atgtgtgggg taagtggagc tttggctgcc ttctaccacg
    13381 acgccattga tgtaaacaac caagcccacc gtgaattaac cgccattcgt ttgttagcca
    13441 aaatcccaac ccttgcggcg atgtgttata aatactctat cggtcagccg tttatgttcc
    13501 cacaaaacca cttatcttac gccggcaact tcttatatat gatgtttgcc actccttgtg
    13561 aaccgtacga agtgaaccct gtgttagagc gtgcgttaga ccgaattttc attttacatg
    13621 cagaccacga acaaaacgct tcgacctcaa ccgtgcgaac cgccgcttca tcaggtgcaa
    13681 acccatttgc ttgcattgct gccggtattg cctctctctg gggacctgca cacggaggag
    13741 caaatgaagc ctgtatcaat atgttgaaag aaatcggcac tgtggatcgc attcctgaat
    13801 ttattgctcg agccaaagat aaaaatgacc cgttccgctt aatgggcttt gggcatcgtg
    13861 tctataaaaa ctacgaccct cgtgcgaaag taatgcgtga aacctgccac gaagtgttaa
    13921 aagaactgaa cattgataac ccactatttg aagtggcatt ggaattagaa cgtattgcgt
    13981 taagcgaccc ttatttcatt gagcataaac tttatccaaa cgtagatttc tactccggaa
    14041 tcgtgctaaa agccatcggt attccaacct caatgtttac cgtaatgttt gccctagcca
    14101 gaaccgttgg ctggattgct cactggaaag agatgtatct ccaaggcaat atcaaaatcg
    14161 ttcgtccacg tcaaatctac accggacata ctaaacgtga ttttgagcca atggataaat
    14221 cataagattg gcaaaaaatc gaaaaatttt aaccgcttgt ttccacaagc ggttatattt
    14281 tgcataaaat ttgcaaatca ggctaattta tttagcagtt gtgttctaac atcttgacca
    14341 ttttcatcgc tttttacagc cataataaat aagccttttc cttgacttaa tttctcccaa
    14401 agattgccaa ttaaggcttt ttctttagaa tcttcattac tttttaattg ttccccttta
    14461 tattccacaa ttaaaattcg accatcaata agctctacaa taaaatcagg gtaaaaattc
    14521 tgatgagcta atggtaaaga aaaccctctt tttacaggat ttcttaacca atcatcagaa
    14581 aaactcagtt gctgctgatt aaaatggtaa gaaacccgtt tatcttccac atcaatttca
    14641 aaactttggc tattttcttg taatctaaat ccatcaagtt tggctggata atccaataaa
    14701 ttccaacttt ggtaatctaa tagcacttgt gaatcagcta agtcgaattc gccttgaata
    14761 ttcatacaca gttgaggtat tactttaaat atttcccctt tttcggcagg agaagataat
    14821 atttcaactc tattctggtg aatttgtaac tgttgctcaa tttgctcttt tttcttacct
    14881 gttgcagttc gaatcaacgc tttttctaac ttttcactta aattaccttt tacttgcact
    14941 aaaatgtgac cttcttgctc ggtaatttta agttgagaac gttttgcttc gcttaaatca
    15001 gacatttcag ggagttgcgt taatgctaaa actgttgtcg gtgtatagaa taaatctcct
    15061 tcgtttccaa tccaattttc ttgttgtggg atacgaagca tttcagctac ttctaatgct
    15121 tcaaacccca ttccaatcaa tttatcttgt aaattacgag ccgtttcgcc gaacgactta
    15181 gaggaaagcg gagcataagc acgatttaaa tcttcaattt gacggtgttt agcataaggc
    15241 attcgcaata ctcgccctaa tagctgctcc gcttccttgc tagaggaaac attttgtact
    15301 gagcaaaaaa tataagcaaa agggcaatcc cacccttctt ttaatgcctc aaccgtgatg
    15361 atgtaattga tcttgcattg tggattaaat aaatcgatat tatctaattc gtgttgatta
    15421 cctatcacaa tggcaatctc ttcttcatca atttttaact catcaattaa atactgtttt
    15481 aagacttcta ctgttacttt gccgtttttc ggctcagctt gaaacaataa atcggacgaa
    15541 cgtactcgct ctcatactgt gctttttgtg ctaatgctcc tctattgatt acagccccat
    15601 ctattgcttg ttgccagttg tgatgttcgg tcagcacaat aggcaatttg atcatctctt
    15661 ctgcttttag atggcttgcc gaaacgtgat acaacacatt acttcctgct tttctatctg
    15721 tgtttggcgt agcagtaaat tctaaaatag ctgatgggga aagttgagat agcacatcaa
    15781 aagagagtga agtccgagca ttatgtgctt catcaacaat gaccaaaggc tgataagctc
    15841 gcaacaaatt tgcaaaagaa cacttaattt tgcccgtttg tttggaggtt aaaccgttct
    15901 cttgtagatc agtagtggaa atcttttcta aatttgcctg aatatggggt agtaaacgct
    15961 caaaatgagc tgttaatttt tcattaaaag catagatttt tcgcccatct tgattttcta
    16021 cccgaaaatt ttgaatagta gaaacgatta caatcgcctt attaccaaaa tcttgtgggc
    16081 gaagtaaatc aaaatcttca gactcaataa ccattacttc tcggttaaaa gttttatcaa
    16141 gtactgcacg gtaagggtgt tgcggatttt ttaatgcttc tgtagtttgg gttttaattg
    16201 tacgagaagg cactggccac aaggtaaccg ggaaatcgca atccaaatac tgctttgcaa
    16261 tacgagcaat actatgcgag gctaacaacg ttttaccgcc accagttgga attcgtacac
    16321 aaacataagg cacatcacgc aaattactgt gttcacttgg gatcttgtaa ctatattcag
    16381 gttgaatttg gctaaatgcg gtttttgcat cagattgcaa acaagccgaa aaatagtggc
    16441 tgacacggtt taatgcctca ttttggtaat tttttaattt catttttttc tcctactatt
    16501 aacgagacat tacatcatat ggaatctgtt taaatgtaat tttcttttca gctaactgca
    16561 cttctcctaa acggcacgct tcgccatata ccacaatatc cattccctgt tgaataaatt
    16621 cagcaaagta tggtaactcc gccattaatt ttcgtgtcag aacattacca ctctgcggac
    16681 gtttatcgcc taaaattccg ttatataaca aatagtaggc tttgccgttg aaagtgccga
    16741 caagcggtga tttttcgctg tttttttgca aagggaaatg attttctaaa taccaaatat
    16801 gggcggctaa atcgtcaaaa cgaatgttcg gattaagtga accgaatgcg tcaaatactt
    16861 cctcgcctaa ctcacaaaag cgaaacgatc caccaccttg ccaatttact gcttttgaaa
    16921 taccgccttg ctcaccttca attacttttt tcaaccgtgg gacaacatgg gttttagcat
    16981 gttcgccaat ctcaataccg atataacgac ggttcatttt atgagcaact gctgcagttg
    17041 tacctgagcc aagaaagcta tcgaggacga gatcatatgg ttcagtcgat gcttctaata
    17101 caaattagat taatttttca ggtttaggat aatcaaatga atcttctgca atatcctccc
    17161 caaataattc tagatgttca ctagcagagt cttcatttgt tgccatatca taatgagctc
    17221 tgctaattaa gttatgaatt tttttctttt ccgcacttcg ctcaaatact ctccttggtc
    17281 gaaagtctaa actttttata atatagtaat caccattttt taattgctca tcaatacttt
    17341 tttggctata ccgccattca ccttcaattt ctaccgtatt tttattccat tgatcttcaa
    17401 taattaattc cgaaatcaac gtaattgaac tcgttttttt agaaaaaatg gttggcttat
    17461 ataatccatc actatgtttt ttaaatttta tagaacgagg agggaaaact aaaatttctc
    17521 ttgaatttcc agcattgtat aatggatagg tttcatcacc tgaggtctca aggtaagtta
    17581 agtcatttaa ttcatttaat tcatttttgt tttttgcata gcaaaataaa ttatctgtaa
    17641 ctttaccaac tttgcctaaa aaagatggtt tccttttctt ttcccaaatt aagttagaaa
    17701 tgaaattctt ccgcccaaaa atttcatcaa gcataatttt caaatagtga ctttcgttat
    17761 catcaagagt gatccaaatt gaaccatctt cggcaagtaa ctctcgcaga atttcaaggc
    17821 gtggatacat cattgaaagc caaatggaat gctctaaatt atcatcgtag tgggtaaagg
    17881 ccgattttgt gttataggga ggatcaataa aaatacattt gacttgcccc gcataaaagg
    17941 gcaaaagaga ttttaaggct gataaattat caccctgaat aattaaattt tgcttgactt
    18001 tagataaggt ttcagcagaa gctgagctgt cggctgtcgg ctgtcggctg tcggctgtcg
    18061 gctgtcgggc aatattatgc gagaagtccg gcaactcacg caataggcaa tatggggttt
    18121 gttttgcttt tttgacggct tcttctttgc cgtaccaagt aagggttgtc ataaaatgca
    18181 cctgaaaagt aaaagtggat tattgtaaca agcggtcaaa aaaatagaaa gttttacaaa
    18241 aaattaagca aatttaaccg cttgcaacat agaaaaggca cagttttata ctgtgccttt
    18301 ggttatatga aattagcctt gtgtgtattt aggctcttta aatactgtta cttctggtgc
    18361 ttgtccggtg aatttttcaa cctgtaccgt agcggtattt ggtgagttac cctgtgctaa
    18421 ttttgatgtg ccttcatcac gggttagcac gttagggttg ccgtttttac atagcggttg
    18481 ctcgctggtg ccgagatcga gcggatcgta ccaagctcct tcgtgcaagg ctaatgtacc
    18541 tttgataatg ccatctgtca ccaccgcacc ggctaatact tgaccacgtt tgttaaaaat
    18601 acgtacaata tcaccgcttg taatgccacg agcggcggca tcttcagtat ggatcaacac
    18661 cggctcacgg tcattaaccg catattgttt gcgtaatgat gagtaagcta actggctgtg
    18721 taaacgccat ttagagtgtg gagtcaccaa tgccaacggt tcttctgcgg tggttttacc
    18781 cgagtattct tcgtgttcca tccaagttgg gtgaccttta cagtcatcat aattcatttt
    18841 ggcaatcacc tcagagaaaa tctcaatttt gccggacggt gtgcctaatg gatttaggag
    18901 tgggtcatta cgaaattctt cataacgaac ccattttttc gctttgtctg atgctttaaa
    18961 agaaagtggt ttattctctt gccagaattt ctcgaatttc ggcataatca cacgattttt
    19021 gcgtgctgcc tcaaatgcag tttgatagaa actttgtagc caatccattt cagatttgcc
    19081 ttcggtaaat tccgcttctt tgcctgcacg tttggctagt tcggcaaaaa tatcgtagtc
    19141 gttttttgcc tcaaattgcg gttcgaccac ctgtttcatc gggaaaatat tcatcattga
    19201 ataatcgccc gacatagtta agtcattacg ctcatagctg gtggttgccg gcagcacgat
    19261 gtcagacata cgagccgttg gtgtccaatg gcattcattg acgataatag tatccggttt
    19321 ttgccacgct ttcaccaaag tgttggtgtc ttggtggtgg gtaaacggat taccccctgc
    19381 ccaatagaca attttgatat caggataagt aatttgtgtg ccattgtaat caatggtttt
    19441 gcccgggttg agcagtgcat cggaaatacg agccaccggg aatgaagatt ttgatgtttc
    19501 atctaaccag gttttcgctc cggcttctac tgccggattt gctgtgatag agcctaaaat
    19561 gccccctgtg gcactcggca cgccgccgtt tgagtaatgg tagcttaaac cgaaaccacc
    19621 acccggtaag ccgatttgac ctaacattgc agctagggtg actaacatcc aatgcccttg
    19681 ttcaccgtgt cgttggcgtt gaatccccca gcctgccatt aacattgtgc gtttagattg
    19741 gaaatcagtc gctaattttt taatggtttc ttccggcaca ccacaaattt gacttgccca
    19801 ttttgcatct ttcggttgat tgtctgtttt accgagcaga tattcttcaa acttctcaaa
    19861 accggtggtg tattttttaa ggaatgcttg atcgtgtttg ccttcagcga ctaaggtatg
    19921 agccataccg agcattaacg caacatcagt gccggtgttt accggtaccc attctgcacc
    19981 taaaaattcg caagattcac tttttaccgg gtcaatacag ataatgcgtt tcccgctctc
    20041 tttgagtttt ttgaagtatt caataccttg ttgatcggta gaagtccacg caatgcgtag
    20101 cgtatttaac gggttagctg accaaagcac cacaatatct gaactttcta aaatcacttc
    20161 ccaactagtt tgctgttcgt acacctcgat tgtacccaag acgtgtggca taatcacttg
    20221 agcagcaccg gtagaatagt cgccttttac accaacaaat ccgccggtaa catttaaata
    20281 gcgttgtaac agtgtacggg aagcgtgtaa tgccccagaa ctataccaac cgtaagaacc
    20341 accaaaaata gcattcgccc cgtgagcctc acgaacacgt ttcatttcat tcgcaactaa
    20401 ttcaaatgcc ttatcccacg aaactcgcac ccattcatca cgcccacgta gagtagtatc
    20461 tttattacct tctaagtagc ctttacgcac cattgggtat tttactcgtg tttcaccgtg
    20521 tacttggtct gctaccacgt gttgcaattc atttggcaca gaaatctcaa aaacagaatc
    20581 agatttcacc actttgccat tttctaccac tacacctaaa ggcccccagt gggcggcagt
    20641 tactactgtt ttcatctcgg ctgctttggc actggtggaa gctaatgccc ccactacacc
    20701 ggtagtacca ctggctaaac ctgcaccggc agctaagctt aatgatgaat tttttagaaa
    20761 accgcgacga cttacgtcaa tattgtcttg ttttttcata ataaacctcg tttgaagtta
    20821 agttaaaaat agacaccttt ctaaagtcga gtggataaac catttctcgt gtatccattg
    20881 gtaaaagcac cgacggtaat ttttgcaaaa tgttaggaaa aaatgaccgc ttgtagtagg
    20941 tgctttacgg cttgctacca tatctctgct ctcagcagac acttaggctc acaagctcgg
    21001 tatcctctaa gttgcaatta atgggaactg cctgctacat cttttgcatt acgttggaga
    21061 tagatagtca ccgcacgcac atcatcagcc gacatagatg ttctgtcttt cattgaattt
    21121 accaccccaa tccattgatt tgcggtgtaa tgttctgccc caatcggtgc atggcaaccg
    21181 ctacagtgtg tttggtttaa gttatcgcca aaatgattta gtgcagtaat attggcagtg
    21241 actgcatttt taggagcagt aatttcaaaa ttgatttctt tccaatttga gttggtgaca
    21301 ttatcaaaca ctgtttttgt gacattcact ttgctttgag cgtcatcagg tagaagagca
    21361 accataatac gcttgcctaa atccatatac accacagatt ccgcaccttc ttgttgccag
    21421 ccattaaccg ttgctttaac ctgctcgcct tctgctgtcc attgatgtaa ttctgcataa
    21481 ggtaacaagc gaatttctcc accttgagcg agctgcactg gagtcattgc gagcgtataa
    21541 agggttttat catttgtgct aaattccgca ccgtgtttag ctaattcgcc cattgctgcg
    21601 gcattatcta ccggcacatc aggcataaaa tgggcaattc ctttatggca atcaatacag
    21661 gtttgattag tttcttgggc tagtttgtgc attttctgtg ccgcttctgt ttgttcagaa
    21721 agtaccatcg catcaaaact atgacagctt ttacaggtca tagaatcgtt ttctttcatt
    21781 tctgcccaaa cacgttgtgc catttctaga cgatgggctt cataggcttc ttgatcaggt
    21841 aatttattgg ttacaacggt gtgccaaaca tcttttaatg cgatgatttt agctttgaca
    21901 taatgcaagc cgtcttgtgg tagatggcaa tccgaacact cggctcgaat tcccttacgg
    21961 ttggaaaaat ggacactgcc ttcccactct gcctgtgggt gagtcataga atggcagctc
    22021 acacaaaatt ctgttgagct ggtggctttc attgcatatt gtgtgccacc taataccgca
    22081 gcacctaatg ccataatacc gacaaataca gcaatttttt tcatcttagc cataaattac
    22141 cccacttaat acactaaaaa ttaaagacag aggcattgta ttaactccca agaggtataa
    22201 aaataagtaa aaatacctat tacctcgaaa gagtgagaat aatttgatct aaggcaaaaa
    22261 tatgtagtga aattttaggc tttttcagag aaccacggcg gtaagataaa ttgtgcattg
    22321 gcaaacaact ccggtgcaat cacacggctc tgcccttgtt ggatttggta aaccaactgt
    22381 ggcaagctga tagataagtc gtgggtttct gcgtaagtta atccaatttg gctatcggta
    22441 ttaaaatagt aagtgccgtt taccccataa tgtggctgta agcggatcgc attggagacg
    22501 gctttaaaat gccgtggtga aacactctgt ttccacgcat ttgccagaat attcgcttgg
    22561 tcataagcaa tactggcttg ggaataagtg ggcgatttgc cgaaaaaccg ttcgtaatgt
    22621 tggctaaact gtctgcctaa ataattttcg cttaacccac tattggtact ccaaagaacg
    22681 ccttcgcaaa gtttctcgtg tggcaaaaac gccgaaggtg cataaatact gtaaataatg
    22741 gcatttgttg ggttgcgaat gaacgtttga taaaactgta caatatcttc tgcaaaataa
    22801 gaggcaaaca caataatgga aggtgcgaga ttatgcacct gtgccattaa tgtggcataa
    22861 ttatcttgct cttgggtgag ttccagataa tccacattcc agccttgctc ccgcaaactt
    22921 agggttaaac tttcaatacc gatatcaact ttttgccaac tcaccgttac caccatcacc
    22981 gttttattct gaagccaagg ggcataatgg taacggtaat attgcagaaa gtgagatata
    23041 cctaagccat aggttacatc actggcgcaa acctgaaaca tattttcaat tcgttgattc
    23101 ggtaaatttt gggcaagttt atttgagcca ctatgggttg caatatgcaa ataaggaatg
    23161 cctttagttg caattaattc gtgtacttcc ggcaagtagc aggcataagc ggtggaaatc
    23221 gcatcaactt cttgatcaaa taaatgatgg tatgcctgaa gaatacttgc tttatcttta
    23281 acataaaacc cagccgttgc aacctgtact tctctgccgt gaataccacc ttgttgattg
    23341 atggtctcaa ccgcaagttg agtgccgtta agtagctctc gggtatcgat ttgcccaata
    23401 ccctgttcaa cataaggcac gccaataata atcggacgac tatgatggtg gtttatcgta
    23461 aaaatcggtg gttcgtgtcg agttgaagcc gttacaagcg gttgtttttt cgcgataatt
    23521 tgcaatgcca gttgttcaat gttaaagctg gcaagaatgg attgggttag ttttcccggt
    23581 gtgggtaaac agattaaatg ttcggtaatg gcaaaaacag ctaataaggt tcggcttttg
    23641 gtatgtgttt tcgcaaaaat attttcgata tgtttatcaa cagtccgttt gctgatacaa
    23701 agctcattgg cgatatcctc attgctcaaa ccactgctaa ttagagtgag aagctcaatc
    23761 tcccttttac tcagtccata aggcaaatcg gtatgctctg cttgagtcaa tacaaacgat
    23821 tggtggcgtt ctaggctgat cttaagccat tgatggtttg aactatagta aaactgcaag
    23881 ctatttttat ctgaatagag caatgcctgt gcatagtggc aaatttgcgg taattcagca
    23941 aaatagtctg cccctgcttt gtcttcccat tctgatattt cgccttgttc atttactaaa
    24001 caagaccatc ggctacgttt atccattctc acctcgaact aaaaacgtta gctaaaatag
    24061 caaaattatc tcggcattaa tatgatataa atcaaactaa gcaacggttg ccagattttt
    24121 ataggtagag catacaattt aaattatacc tcttgcctaa ttaggtttct caccataaaa
    24181 tgaaaaccaa tttattgaag actccgagca ttatttccta actctaaaaa ttaaagacaa
    24241 atttttgata tggaatttat gccagtaaca gcataaagct gttcaaagga taacttagaa
    24301 atgggttgtc ctctcgtgtt tagaaaggtg tcaaatgcag tctattatcc caattaaaaa
    24361 cgtgggtgat gatgtcgttt caggtttagt tgatcgcttt cagcgtcaat atacttattt
    24421 gcgactatcc attactgatg tttgtaactt ccgttgtaat tattgcttgc ctgatggcta
    24481 taagccgcct tcacataagc aaacttttct tagcgttgat gaaatccagc gggtggctaa
    24541 agcctttgcc aatttaggga cggaaaaaat ccgtatcacc ggtggtgagc caactttacg
    24601 caaagatttc ctcgaaatcg ctcacactat ttcacaaaca cccggtatcc gtaaagttgc
    24661 cctaaccacc aacggctatc gcctagagcg tgatgttgaa ctgtggcaac aagccggtat
    24721 taccgatatt aatgtgagtg ttgatagcct tgacccacgc caatttcaac tgattaccgg
    24781 cgagaacaag ttgcaatcta ttttaaaggg tattgataaa gcctttgaaa ttggctaccc
    24841 aaaaattaaa gtcaatgcgg tgctaatgaa gcaatatacc gcccctgaat tggataaatt
    24901 cctcacttgg atcaaagaca agccgattca aatgcggttt attgagctga tggaaaccgg
    24961 tgaaatggat agtttcttcc aagctcaaca tctttctggt caatcggtga tgacccgctt
    25021 attacaagaa ggctggcaat tacaacccaa agcgatgtct gacggcccgg caaaagtgct
    25081 ttctcaccct gattttaaag gcgaaatcgg cttaattatg ccctacgaga aaaatttctg
    25141 tgcctcttgc aaccgcttgc gtgtttccgc acttggtaaa ctgcatcttt gcttatttgg
    25201 tgaagaaggg attgatattc gtgatttact ggcaagcgat gagcaacagt tacagcttga
    25261 aacccgccta aaatcttcct tacaaggcaa gcgagaacac cactatttgc atattgggga
    25321 tagtggggtt aggaataatt tggcgagtat cggtggttaa acaaccaccg agcgtgtttt
    25381 ttctgttact tttctttgct tcgccaaaga aaagtaacca aaagaaaggc gaccccagat
    25441 tttccttaat ccttcgcttg ttgctaactt ttgggacgaa cttttcaaac tcgccaactg
    25501 cgttggctca aacacgaaaa gttgtcctca aaagtttacg caatcgctac ggcggaaaat
    25561 aggggcaagc ggtacattat ttaagatttt tgcaagtttt tatttaaaaa taaccgcttg
    25621 taatgttcca gcttctccct tctgaaccgc ctgagcgact ttgaatttat aggaaaaatt
    25681 tagtgtttga gccaacgaag ttggcgagtt ttaaattttt ccgttaaaca aattcaaata
    25741 aaatgaagat agcggtgaag tagggtgtgc tttctttggt tactttcttt gcacaagcaa
    25801 agaaagtaac aagaagacgc tcaatattaa ttttacaatc aaatttaaag agacaaacaa
    25861 atgacaacct tcacccacat caaccaaaac ggcgaagcca atatggttga tgtttcaatg
    25921 aaacaagaaa ccgtacgcat tgcccgagcg gaggcatttg tgcgaatgaa tgccgaaaca
    25981 ttacaaatga tcgtcagtgg taatcaccac aaaggcgatg tattcgcaac cgctcgaatt
    26041 gccggtattc aggcggcgaa gagaacttgg gagctgattc cactctgcca cccgttattg
    26101 ctttctaaag tggaagttca actggaggcg ttgccggaaa gcaaccaagt gcgaattgaa
    26161 tcactctgta aactaaccgg caaaaccggc gtggaaatgg aggcattaac cgcagctagt
    26221 gttgctgctc tgactattta cgatatgtgt aaagccgtgc aaaaagatat gattattgaa
    26281 aatgtaagat tacttagtaa aagtggcgga aaatcaggag atttcaaggt tgattaagat
    26341 actttttttc gcccaagtgc gtgaacttgt ggcaacggat agactagatg ttgagcctac
    26401 ttttaccact gccgaagcgt tgcgtgaaca cttaagccaa cagggtaaaa aatggcaact
    26461 tgcccttgaa aaaggcaaac tgctggttgc aattaatcaa acgatctgcc cgcttgaaac
    26521 ggagatcaaa gacggcgatg aagtggcatt cttcccaccg gtaaccgggg gctaaaatgt
    26581 ttgaaaccct gattgaagta caagaagctg aatttgacca aaaccgcatt taccaatggc
    26641 tcagtgaaca acatagcgtg ggggcagcca ctctattcat cggtaaagta cgtgaaatga
    26701 atttgggcga taatgtttcc ggtttgtttc ttgaacacta tccggcaatg actaaaaaag
    26761 cattgcaaga aattgtggct caagctcgca ctcgttggga tttacaacgc gttgcggtga
    26821 ttcaccgcat tgggcaactg cataccggtg atgaaatcgt attagtcggt gtgagttctg
    26881 ctcatcgagg tgatgcctac cacgccaacg agtttattat ggattatctc aaaaccaaag
    26941 ccccattttg gaaacgagaa caaacccaag ccggtgaacg ttggattgaa gggcgtgaga
    27001 gtgaccaaca agccgccaaa aaatggcaat agaaaaaatg gcaataattt gcaaaaggta
    27061 acgaatggaa aatttatata ttgatttgca gatcgcctgc gaaaataccg aaaacttacc
    27121 aagtgaacaa caattttata cttgggtaca aaaagccctc gcagttgagg caaaaaccga
    27181 tgatttccct gagagtgaga tcaccattcg gattgtcgat gaagcagaaa gccacgagct
    27241 aaatctgact tatcgtggta aagacaagcc aaccaatgtg ctatctttcc cgtttgaggc
    27301 ccccgaagga atcgaaatgc cactattggg tgatttagtc atctgtcgtc aagtaatgga
    27361 aaaagaggcg gaagaacaag gtatttcagc cgaatcccat tgggctcatt tggcgattca
    27421 cggcacactt catctgctcg gctacgacca tattgaggaa gatgaagcag tggaaatgga
    27481 aagcctcgaa accgaaatta tgcaaagttt agggtatgaa gatccgtatc tttcagaaaa
    27541 aatatagtct tgtaggggag ggtcctgtgc cctccagtac tccattataa tcggacaggc
    27601 acaggagctg ttcctacaag ttatatgaga acgatcgcaa tcataacatc tcctaacaat
    27661 gccgacttta ttcaacaagg ctatttttac attcccgaaa atcatcagct taaagctatc
    27721 cccttttcca atgccaaaac gattttagga caagaatacc cttttgccat ttatactatg
    27781 caagcagaaa atggggtgaa ttttaactta gatgcttttg caatacttgc cggcactatt
    27841 caagaaaacg gtactttatt tttgctttgt cctcagtggg ataatttgga aaatgaatta
    27901 gatttcgatg cgttacgttg gaacgaaaat caggctattg cctgcccgaa tttctatcaa
    27961 cattttaaac aattagtcgc taaatttggt tttgaagtca gaactaattt gccaaaatta
    28021 ccggctacaa gcggtcaaat tccttcaaaa atttaccaat taacgcaaga acagcaaaat
    28081 attttgcaaa atctaccgct tgatcctgcc gatattcatt tgattaccgc ccctcgtggg
    28141 cggggcaaat ctacccttgc agggcgactt gcaaaagcgt tacccgcaca aaataaggta
    28201 ttaattaccg cacggtctta ttctgcattg cccagttttt ggcgttcggc agagcaaaaa
    28261 atcccttttt tcgcacctga caatttaatc gagcaagtta aaagtaaaaa catttcacct
    28321 aaccaatggc tctttattga tgaggcagct agcctaccct tgccgatact ccacacactt
    28381 tgtgcctatt ttgaaaaagt ggttttaacc acaacaaccc aaaattacga aggcacgggg
    28441 cgaggatttg agctgaaatt cccggtaatg ttggataaac cgtttaaaca ttggacgtta
    28501 tctcaaccat tgcggtggag cgaaaatgat cctctcgaag catttgtgac tgagttgcta
    28561 ttactttccg aagaaaaatc tcccctcttt agcaaagagg ggaaggggga gatttattcg
    28621 cttcgctcac actatgtgcc gttgctaaag caacgttcaa acgcaaagcg tttgtggcag
    28681 aagcaattat cgaagaatat aagttattcg aataagcatt tacaggaaaa aatcgctttc
    28741 taccacttac tcgccaacgc ccattacaaa accactccaa ctgacttacg ccgtttattt
    28801 gatggcgaaa atcagctttt gttttcacaa caggaaaacg agcaacttat cggcggaatt
    28861 tgggcaatgc aagagggtgg tttagatgaa aaattaaccc aagccatttg gctaggggaa
    28921 cgccgtccgc aaggcagtct agtggctcaa tatctctgtt ttcaagggaa tttaccgcag
    28981 gcttgcaaat tgcattccat tcgcatttct cggattgcgg tattgcctga aaagcaaaat
    29041 caaggcgttg gcaagcggtt gatttctcag tttattttgc aaaattcggt agaaaaacga
    29101 ccgcttgatt ttatctctgt gagctttggg ctaactactc cactccacgc attttggcaa
    29161 tcttgtggtt tccaacttgt gcaaatcaca ccgaataaag aggcaagcag tggttatcaa
    29221 agtgcaatga tgatttaccc gatttcggag caaggaaagt tatttgcaca gcaggcaacc
    29281 caagcctttg ccagagattt cgcccttcag ccatttttca cggaaatttg tgaggaattg
    29341 caaaatttcg aacaatttcg accgcttgcc acacacaatt tagatgaacg tgattggaaa
    29401 aatttaaccg cgtttgctca tggcaagcgg acgttttcag cggcgtatgt gagtttaaaa
    29461 cggctttatt tatcggataa agcacgcttt tcagagctgg atatttttga acgaaaaggg
    29521 caaaaaatct ccaaaatgga ggtggaaaat tatcgaaaac tcgttttgca aaacttaaac
    29581 aataaatcat ttaaaataat ttataggttt tattacattt ttttgtgttt ttgctcttgc
    29641 taaatctgca atttaatcgt ataaattcac tgtttatttt tcattttgat gaggaactcc
    29701 aatgtcaatg tttagtcaca ttcaagctgc tccggcagac tcaattttag gcttaggtga
    29761 agcgtttaaa gcagatagcc gtgaaggtaa aatcaacctt ggtatcggtg tttatatgac
    29821 cgatgaaggc aaaaccccga ttgtcaaagc ggtaaaagaa gcagaaaaac gtttattaga
    29881 gacggaaaac agtaaaaatt atttaaccat tgacggtgtt caagcattca atgcggcaac
    29941 gcaagcgtta ttatttggcg aaggggctga agtgattacc tcaggtcgtg ctaaaactgc
    30001 acagagttta ggtgggacag gggcattacg cattgcggcg gaatttatca aacgtcatac
    30061 gaatgcgaaa aatgtatgga tttcaacccc gacttggcca aaccataacg gcatttttga
    30121 tgcagtaggc gtgaatgtaa aaggctatcg ctactacaat aaagagacta acggtttaga
    30181 ttgggaaaat ttaattgccg atttaagcca agcggaagcc ggagatgtgg tgttattgca
    30241 cggttgctgc cacaacccga ccggaattga cccaacacct gcacaatggg aacagttagc
    30301 agcattatct gccgaaaaag gctggttgcc gttatttgac tttgcttatc aaggctttgc
    30361 aaacggttta gaggaagatg cttacggttt acgagctttt gtgaaaaata accgtgaatt
    30421 gttggtcgca agctcattct cgaaaaactt tgggttatat aacgagcgtg tcggtgcatt
    30481 taccctaatt gcagataatg ctgatgatgc caaccgtgct ttcactcaaa tcaaatcgat
    30541 tattcgtgta ctttactcta acccatctgc tcacggtgca agtgcagtag cagttgcatt
    30601 ggctgatcct gaccttaaag cacaatggat tgcggaatta gatgaaatgc gtaaccgtat
    30661 taaagaaatg cgtagccaat tagtgcagaa attaaaagaa aaaggggcaa acaaagactt
    30721 ctctttcatt actgagcaaa atggtatgtt ctcattcagt ggcttaacac cggagcaagt
    30781 ggataagtta aaagatgagt ttgcaattta tgctgtgcgt tcaggcagaa tcaatgtagc
    30841 aggcattacc agcaaaaaca ttgatgctct tgccgatgcg attgtgaaag tgctttaatt
    30901 aaaccttaaa gatatataga ggcataagcc tgagtgcttg tgcctctttt ttatctttta
    30961 ggtacaagtg tggacacttg caccaacgtt gattattcgt agaactaggt ttccaaccaa
    31021 agcataaaat ctgctaccgt atgaaatgag ccgaacacca gcacaatatc attttcgttg
    31081 gctgtttcaa acaatactcg gcttgcctgt gccacatttt catagctaca agcggttgaa
    31141 tttggcaaaa cgtttaccaa tttcgctaac accgcctcgc ctgtttgtcc acgccaacaa
    31201 tctagccctg cacaatgcca ttcatcaata atattagcta atggctcgac aataccggat
    31261 aaatccttat cttctaacgc actaaacacc gcatagattt tttgatttgg ttgctttaac
    31321 tcccgcagtt tgtcagctaa ataacgtgct gcgtgtgggt tatgccctac atcaataatt
    31381 acttttgcag ccggtttagg ttgagaaaaa tgagtaaaat cggtatccgt cagggtttga
    31441 aaacgccctg tcatttgagc ttcatttaag gcttgtcgaa taatcttttc atcaatttca
    31501 aatggcagtt gcattaatac tgctaatgcg gtgccggcgt ttggaatcgg aataagcggg
    31561 attggtaaat cggtaaagga tttttcttca gaataccaat gaaacagatt attcttaatt
    31621 tcaaactgcc agtctttacc ccggtaaaaa gcgtgacaat ttaacgaatc agcaatctgt
    31681 ttaatcgaat gagggcaatc aggctcgccg atgacaaccg gaatattttc acggaaaatg
    31741 ccggctttct cacgcccgat gtcttcacgg ttatcgccta aaaatgcaac gtggtcgata
    31801 tcaatcgaga taatcacggc aaggcttgga tcaataatat tagtggcatc taatcgccca
    31861 cctaatccga cttctaaaat cacaatatcg agctgatttt gtttgaatag ctcaaatgca
    31921 gacagcgtac taaactcaaa ataagtgagt gaagcggtct tttttgcatt aatttttgca
    31981 aatgcttgga cgtggtcggc atcaggtaat acttcgccgt taattcgcac ccgttcatta
    32041 tagtgaatta agtgcggtga agagtaaaca ccaacccgaa atccggcttt taataaggta
    32101 acttctaaca aacggcaggt cgaacccttg ccgttagtac cggcaacggt aatcacataa
    32161 ggggcaggct tgagtaaatc cagctctgtt gcgaccttac gaatacgatc taagcccata
    32221 tcaatcggtt tagaatgggc ttgttctaaa taggaaagcc acgtttccaa agaatccgtg
    32281 gctttaggta tgcttaatgt attcattcag atattttatt ctgcgttttc tacaaccaat
    32341 tccgccactt taaacggcgt tggttgattg gttaattttg cacaaagacg ggaaagggta
    32401 tcacgcatct ctttacgatg cacgatcata tcaactgccc cgtgttctaa taagaactcg
    32461 gcacgttgga aaccttccgg cagtttttca cgtacggttt gctcaattac acgaggacca
    32521 gcaaagccga ttagggcttt tggctcagca atattcacat cgcccagcat tgccaaactt
    32581 gcggaaaccc cacctaaagt tgggtcggtt aatacagaaa taaacggtac gccctgctct
    32641 ttcattttgg ctaaaatcgc actggttttt gccatttgca ttaaagagaa taacgcctct
    32701 tgcatacgag ccccgcccga tgccgaaaaa cagataaacg gaattttttc agctaaagct
    32761 ttttccgcag ctttcacaaa ttttgcacct actacagacc ccattgaacc gcccataaac
    32821 tcaaagttaa aggaggccgt aaccaccggc atattatgca atgtaccggc aagcacgata
    32881 aaagaatctt tctcaccggt ttgtttttgc gcggcagtta aacgatcttt atatttcttt
    32941 aaatctttaa atttcaacac atcttccggc tctaagtcgg cagcgatttc gaccgcagaa
    33001 tctttatcta acaaattcaa taaacgggtg cgggcatcaa tacgcatatg atgatcgcat
    33061 tttggacaaa cctgttggtt gcgttgtaat tcttcgctat agagaacttg ttcacaactt
    33121 gtgcattttg tccatacacc ttccggcact tttgattttg cattgcttga tgatgaagag
    33181 tctctaccta aaattctgtc taaccagctc attattattc cttttggatt gagttgttgg
    33241 gttcactaaa tggttgctat taaagcataa tttatcggtt tttgatatgt tttcttgaca
    33301 tatcagatca ctaactatgt gtataagttc gataaaaaaa cgcaatcaga agaatgatta
    33361 acatcaccac aatttgaatt aagcgttttt tggttaattt ttccgctgcc attgctctgc
    33421 tcatacttaa taaatttccg cattataagc gaaaaagcac gggctatgta gaatttgcaa
    33481 aattttgatc aaaaataacc gcttgtaaaa aggaaatact atggcaacca ttgaacaatt
    33541 tcttgaggtt gtaaaccaac ttcgtcaccc tgaacacggc tgcccgtggg atctcaaaca
    33601 gaattttgac acgatgttcc ccacttattg gaagaaacct acgaagtagc ggaagcgatt
    33661 cacacccaag atcgcactgc cttgcgtgaa gagttaggcg atttattact gcaagtggta
    33721 tttttaagcc aattagcgaa agaggaaggc agtttcactt ttgatgatgt agtaacggat
    33781 attcacgata aactgattta ccgccaccct cacgtttttg gtgatgtgaa agctactaac
    33841 agcgaagagg ccttacaaag ttgggaagca caaaaagcga atgatgcaaa acaccgtagc
    33901 caagattcta tttttagatg atttaccttt tgctttgcct gctcttaccc gtgcaaataa
    33961 gctacaaaaa cggtgtgcaa aagttggatt cgattgggat aaccctcacg atgtgctggc
    34021 aaaagtcgaa gaagaactcg atgaagtcaa agcagaaatc gcacaatatc cggctcgctc
    34081 catcgagctt gctgaagaat taggcgatct cttgtttgcg attgtaaatt tatgccgcca
    34141 ttatcatacc gatgccgagg aaattttacg caatgcaaat ctaaaatttg aacatcgctt
    34201 tcgaaaagtt gaaaaatctg tgaaaaaatc gggaagaact gtaaaagaat gtaaattaga
    34261 agaactagat gtaatttggc acaaaataaa a
//
LOCUS       DANLXK010000013        31499 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.013, whole genome shotgun sequence.
ACCESSION   DANLXK010000013 DANLXK010000000
VERSION     DANLXK010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31499
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(196..378)
                     /locus_tag="PXD88_000515"
     CDS             complement(196..378)
                     /locus_tag="PXD88_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280126.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            528..1568
                     /gene="selD"
                     /locus_tag="PXD88_000516"
     CDS             528..1568
                     /gene="selD"
                     /locus_tag="PXD88_000516"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:573..575,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL6280127.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1568..2041
                     /locus_tag="PXD88_000517"
     CDS             1568..2041
                     /locus_tag="PXD88_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL6280128.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2031..3239
                     /gene="ubiH"
                     /locus_tag="PXD88_000518"
                     /gene_synonym="visB"
     CDS             2031..3239
                     /gene="ubiH"
                     /locus_tag="PXD88_000518"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL6280129.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3502..4734
                     /locus_tag="PXD88_000519"
     CDS             3502..4734
                     /locus_tag="PXD88_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL6280130.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4801..5787
                     /locus_tag="PXD88_000520"
     CDS             4801..5787
                     /locus_tag="PXD88_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6280131.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5828..6238)
                     /locus_tag="PXD88_000521"
     CDS             complement(5828..6238)
                     /locus_tag="PXD88_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL6280132.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXD88_000522"
     CDS             complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXD88_000522"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL6280133.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXD88_000523"
     CDS             complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXD88_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL6280134.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXD88_000524"
     CDS             complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXD88_000524"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL6280135.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10139..10870)
                     /locus_tag="PXD88_000525"
     CDS             complement(10139..10870)
                     /locus_tag="PXD88_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL6280136.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXD88_000526"
     CDS             complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXD88_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL6280137.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXD88_000527"
     CDS             complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXD88_000527"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL6280138.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
     gene            12533..14968
                     /gene="plsB"
                     /locus_tag="PXD88_000528"
     CDS             12533..14968
                     /gene="plsB"
                     /locus_tag="PXD88_000528"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL6280139.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(15073..15636)
                     /locus_tag="PXD88_000529"
     CDS             complement(15073..15636)
                     /locus_tag="PXD88_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL6280140.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(15834..16730)
                     /locus_tag="PXD88_000530"
     CDS             complement(15834..16730)
                     /locus_tag="PXD88_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6280141.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            16866..17207
                     /locus_tag="PXD88_000531"
     CDS             16866..17207
                     /locus_tag="PXD88_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL6280142.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            17218..17571
                     /locus_tag="PXD88_000532"
     CDS             17218..17571
                     /locus_tag="PXD88_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL6280143.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            17631..18269
                     /locus_tag="PXD88_000533"
     CDS             17631..18269
                     /locus_tag="PXD88_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL6280144.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            18404..19585
                     /gene="purT"
                     /locus_tag="PXD88_000534"
     CDS             18404..19585
                     /gene="purT"
                     /locus_tag="PXD88_000534"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL6280145.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(19677..21170)
                     /locus_tag="PXD88_000535"
     CDS             complement(19677..21170)
                     /locus_tag="PXD88_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL6280146.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            21371..23218
                     /gene="ilvD"
                     /locus_tag="PXD88_000536"
     CDS             21371..23218
                     /gene="ilvD"
                     /locus_tag="PXD88_000536"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL6280147.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(23352..23702)
                     /locus_tag="PXD88_000537"
     CDS             complement(23352..23702)
                     /locus_tag="PXD88_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL6280148.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(23731..24396)
                     /locus_tag="PXD88_000538"
     CDS             complement(23731..24396)
                     /locus_tag="PXD88_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL6280149.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            24602..25150
                     /gene="pgsA"
                     /locus_tag="PXD88_000539"
     CDS             24602..25150
                     /gene="pgsA"
                     /locus_tag="PXD88_000539"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL6280150.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            25228..27066
                     /gene="uvrC"
                     /locus_tag="PXD88_000540"
     CDS             25228..27066
                     /gene="uvrC"
                     /locus_tag="PXD88_000540"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL6280151.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(27071..27346)
                     /locus_tag="PXD88_000541"
     CDS             complement(27071..27346)
                     /locus_tag="PXD88_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280152.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
     gene            complement(27471..27824)
                     /gene="rplT"
                     /locus_tag="PXD88_000542"
     CDS             complement(27471..27824)
                     /gene="rplT"
                     /locus_tag="PXD88_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL6280153.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
     gene            complement(27933..28130)
                     /gene="rpmI"
                     /locus_tag="PXD88_000543"
     CDS             complement(27933..28130)
                     /gene="rpmI"
                     /locus_tag="PXD88_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL6280154.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            complement(28394..28936)
                     /gene="infC"
                     /locus_tag="PXD88_000544"
     CDS             complement(28394..28936)
                     /gene="infC"
                     /locus_tag="PXD88_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL6280155.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            complement(29095..30894)
                     /gene="recQ"
                     /locus_tag="PXD88_000545"
     CDS             complement(29095..30894)
                     /gene="recQ"
                     /locus_tag="PXD88_000545"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL6280156.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            complement(31003..31308)
                     /gene="cyaY"
                     /locus_tag="PXD88_000546"
     CDS             complement(31003..31308)
                     /gene="cyaY"
                     /locus_tag="PXD88_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL6280157.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
BASE COUNT         9016 a         6151 c         6932 g         9400 t
ORIGIN      
        1 gactgtcaga tcaagtctga tcttctacaa ctaagccttc tcagaataaa taaattttca
       61 caagcggtgc aactttgcaa aaacttcggt attatgtagc agttgcacaa aaccccaaat
      121 tcattaaaac cgcttaaaaa tgaaatgccc taaactgatt tttcagtcta gggcatttat
      181 tatcacatat tatggttaat agggaaaact cacatcattg ttatgctggt gatatttttg
      241 ccaaaatgcg tgatattgtt ttttcaccga tgtgtttaat aaaaacggga ttatcaagac
      301 ataggtcggg caattccata gcattgcacg ttgtgtatcc gtgccgattt tggtgcgtaa
      361 gtaaccaaac tgatacatta gacccaatcc aaccgtcacc tattctaata gcataataac
      421 taaggtcgca tcattaaatt aaaagctcat tttttgcaaa aaatttccca aattccaccg
      481 cttgttggcg tacaataggc ataattttga tttacgatgg aggcagaatg tctgaaccga
      541 taaaacttac gcagttcagc cacggggcgg gttgaggctg taaaatttcg cctaaggtgt
      601 tagggacaat tttacaaact caattagaac aatttgtcga tccgaattta ttggtaggca
      661 atgaaacggc ggacgatgct gccgtctatg atttagggaa cgggcaggcc attatcagca
      721 ccaccgattt ctttatgccg attgtggacg ccccgtttga tttcgggcga attgctgctg
      781 ccaatgcgat tagcgatatt tatgcgatgg gtggcaagcc gattatggcg attgcgattc
      841 tgggctttcc ggtgaataaa ttgccggctg aagtggctca acaaattgtc gaaggtgggc
      901 gttttgcgtg ccagcaagcc ggtattgcct tggcgggcgg gcattcgatt gattcgcccg
      961 atccgatttt cggcttggct gttaccggca ttgtgccgac cgaacgggtg aaacgcaatg
     1021 cctctgcggt ggctgggtgt gagctgtttt taaccaagcc tttggggatt ggcattctaa
     1081 ccacggcaga gaaaaaaggt ttgttgaagc ctgaacatca acatctggca agcgaggtaa
     1141 tgtgccaaat caacttgatt ggttcagcgt tttccgaact gcctgaagtc acggcaatga
     1201 ctgatgtaac cggttttggc ttactcgggc atttaagcga ggtgtgtcaa ggctcgggct
     1261 tacgggcgga ggttgatttt gaggatattc aagtccttga tggcactaag gagtatattg
     1321 cattgggagc agttccgggt gggacaaatc gcaatttcga cagctatggg catttgattt
     1381 cggcaatgac ggacgagcaa aaagcgattt tgtgcgatcc gcaaacctct ggcggtttat
     1441 tagtggcggt gctgccacaa gcggtcgaaa aagtgcaaca aattgcaaat cgggcaaatg
     1501 tgccgttatt ccacgttggc agattgctgg aaatggaaca gggcaaacca cggattgagg
     1561 taatttgatg tttaaaccaa atgtaacaat ggcttgcgtg gtgcattgta agggaaagtt
     1621 tctgtttgtg gaagaaattg aatatggcaa acgtaccctt aaccagccgg cagggcattt
     1681 agaaaaagat gaaaccttgc tggagggggc aagccgtgag ctgtttgagg aaaccggtat
     1741 tcgggcagaa atggcaaatt tggtgaaaat ttatcaatgg caagcccctc gttcacaaac
     1801 cgatttcttg cgttttctgt tttcggtgga actggaagag tggctggagc cgaatccgca
     1861 agatgcggat attacccaag ccctttggct tactttagca gaatttgaag actacattca
     1921 gcaacaaggg caatgtgcca gaagcccgtt ggtggttcaa tcggtcaaag attatttaag
     1981 cggtgagcgt tatccattaa gtttgttgaa tgcgtttgaa tgggcgagaa atggaaaata
     2041 aaacaacaac ccaatttgat gtggtgattg tgggcggggc agtgaccggc tcggtgctgg
     2101 cattggcgtt aagtagtttt actcatcaca aaatctcgat tgcgatagtg gaaaaatcgc
     2161 tgccggacta tgaacagcaa ggcggttttg atgctcgcag tattgcctta gccgaaggca
     2221 gtttgcaaaa aatggggcaa atcagaccgc ttgcaggctc aagtttaggc gagatgatta
     2281 gcgaaatcgg cacgccgatt cagcaaattc aagtagcgga taaagggcat tttggtaaaa
     2341 cgaccttgaa agcaagcgag cagaatgtgg ctcaactggg tatggtggtg gaacttgcaa
     2401 aattcggcag aaaattgacc gcttgtcttg cacagcaagc taatattacg cttttttgcc
     2461 cgaatcaagt ggttggcatt gagcgttccc aacaacattg tggattgagc ttgaaaaatg
     2521 gtgagaaact aagctgttcc ttgctggtgg cggcagatgg tattcaatct cagattgcaa
     2581 aacagtgcgg tgtggaaacc gtaaaagtaa gggattatgc acaatcggca attatcgcca
     2641 atgtggaact gagtgaatct caccaaaatc aagcctttga atattttacg cctcaaggcc
     2701 cttttgcttt attgcctttg agcggaaata tgatgtcgtt ggtgtggtgt gtgaaagagc
     2761 cgaacgagtt aatccaactt tcagacagtg aatttttagc ccgtttgcaa caacaatttg
     2821 gttggaagtt agggcaattt gttcgagtga gcaagcggtt tgtttatccg ctcattttgc
     2881 aaaaagccca gtcgcatatt caccaccgct tagcagttgt cggcaatgcc gcacaaatgc
     2941 ttcacccggt tgctgggcaa ggtttcaact taggcttgcg tgatttgact accttagcgg
     3001 aattagtggc tttggcgttt aatcaaggga aagatatagg cgaattttcg ctcttatcaa
     3061 cttttgagaa tgagagaacg caagatcaag ccagaatgat aaatgctaca agcggtctga
     3121 tttcgctttt ttgttgcgaa atgttaccag ttcaggttgt gaggaattta gggttattaa
     3181 cggtttccca ttcaaaaata gccagagatt ttgttgctaa tcaggcatta ggttggtaaa
     3241 aaacacaaaa gcagcaattt tctatttgac actgttttta aaaaggcgta ttatccaacc
     3301 cgtttaaaaa tctcaccaaa gccttgaatg caaattcaag gctttttcct ttttagtgaa
     3361 agcctatgaa ttttgtttgc cgtaaaatcg gcaaaaaaat tttgcctaaa attcgcaatc
     3421 gtttgcgaaa taggtttata gcgttgtttt catctgggta actgcaatgg ttacatcgca
     3481 atacatcaaa gagagtaaaa aatgaccaca gaaaatatga gtacgccaaa gcaggcgttt
     3541 atcgggctgc aaatgctgtt tgttgcattt ggggcgttag tattagttcc gctgattacc
     3601 ggtttagatc ctaatgttgc ccttcttacc gccggtgtcg gtacgttaat cttccaaatt
     3661 tgtactaaac gtcaagttcc tgttttcctc gcatcgagtt tcgcttttat cgctccaatc
     3721 caattcggtg ttcaacaatg gggaattccc gtcacaatgg gagcattgct ctgttccggt
     3781 tttatttata tggcattatc tgctttagtg aaagcgaaag gggtgaatat tctgcataaa
     3841 tacttccctc caatcgtgat tggaccggta attatggtga ttggtttagg tcttgctcct
     3901 gttgcggtgg atatggcaac gggtaaatcg gcgaatattg cctataacac cgctattatt
     3961 gtttcaatga taacgctggt aactacgctg attgtggcgg tgtttgcgaa agggctatta
     4021 aagctcgtgc caatattagc aggtttaacg gtgggatata tcttgtctgt ttttatggga
     4081 ttggtggatt ttactaaagt ggttgaagct ccttggttta gtctaccgaa agtttccgca
     4141 ccggaattca aattagatgc aatcttgtat ttattaccta tcgcacttgc tccggcagtc
     4201 gaacacttag gcgatgtaat ggcaatcagc caagttgccg gtaaagattt tatgaaaaaa
     4261 ccggggttac accgcacgct tttaggtgat ggtttagcaa cttcagcagc tgcggcatta
     4321 ggtggcccac caaatacgac ttactctgaa gtaaccggtg cggtaatgct aaccaaaaac
     4381 ttcaatccga aaattatgac ttgggctgcg tgctgggcta tcgctttctc attctgcgga
     4441 aaaatcgggg cattccttgc cactatccct acttttgtga tgggcggtat tatgatgttg
     4501 ctgttcggtg cagttgcggt tgtggggatc aatactctaa ttaaagctaa agttgattta
     4561 agcattccac gtaatctttg tattgcttct gtagtaatga cattcggtat tggcggtatg
     4621 ttaattaaca tcggcgaatt ctcattaaaa gggatcagct tgtgtgcatt agtcgctatt
     4681 gtacttaaca ttgtattacc aaaagaaaaa gtagaagatt ctgctgctca ttaatcaaag
     4741 gacgctgtgg cgtccttttt gctaataacc ctctatttgt aaataaaaag gaataacact
     4801 atgcaaaaac tcacattttc accaccactt ttaaatacgc cttgcccttg gtgttcggag
     4861 ttagagagct tgcgtgaact ttatgcgtgt gaatataccg gtgcggtaac aacccgtact
     4921 tcaatgcctc aaccatatcc acacgattgg gcgaagaacc aatatgtact ctttgattcc
     4981 aacgcacaga aaacagcaag tgtgaatact caagatgcaa ctagcttaca aacagcaagc
     5041 cttaacacca tcggtttaag cccaaataat ctggatacca ccatcagctt tgtacgcacc
     5101 atttcaaatg agctgacagc gccatcaagc aaaccattta ttatttcggt gtttggttca
     5161 cccgaagagg tgggggaatg ttatgaaaaa attgttgctt tccaaactga agtgaaaatg
     5221 cctttggcaa tggagattaa tatctcttgc ccgaatattc cgggtgaaat ttcgcctgct
     5281 tattccgcag aagaattatc acattacttg cacgcactac aaacttcgct aaaaaaactg
     5341 gctcaaggtg ataatacttt accaatcggg attaaaattc caccttttac ttaccaaaat
     5401 caatatgatg aattaatcaa aggcttatta caagcggtcg aaaatggcga aaatttacca
     5461 atttccttta ttacttcaac caatacgctt ggctcatcgc ttgtcttaaa tgctggcaaa
     5521 gcggtattaa attcagaagt gggaacgggc gtaggcggaa tggcaggaac ggcaatccat
     5581 gcactttctt tggggaatgt ttacacgatt cgccaaatgt tagatcaaga gcctaagctc
     5641 aaacatcttc aaattattgg tgtgggcggc gtgaatgata aagccggctt tgagcgaatg
     5701 aaatcggttg gggcagactt tgtggggtta gctaccgcat taggggtgaa aggaatcggc
     5761 gtttttaaag agattctgtc tgaataatga agaggagggc gtgcattgca cgcccgaata
     5821 aatgaaatta gcctaaccat ttctccacta attcattagt ggtttcttta tgtacccaca
     5881 tactgccaag ttccggcatt gggaatttgg tgtggttgta gccgacaaat tggcggaaat
     5941 caaacacggc gtgcgggtag ccgttgatca gtaaaaaggc ttgatagccg tcttcactcc
     6001 agcaaatttc taaacggcga ggttctttta atgaattttg ctcaatatcg ctgacccgaa
     6061 acacaaataa actatccact accggctgtt cggtttggtg taagtccatt gcataaaagt
     6121 agccgctttc ttcatcaatt tcaaacatca ctactaaatg ttcgtgctgg gttgaatgag
     6181 cgccattacg gtaaggttcg ttcagtagaa tatgagcagt taaaacagag tagagcatta
     6241 aattatcctt ataagtaaaa tgccaccgat ttctcagtgg catttaaata tttaatcagg
     6301 caattacgct tgacctttaa tctctttacg gccgttgaac ggagccggtg taccagcacg
     6361 ctctaacgct tcttcgatac ggattaactg gttgtatttc gctacacggt ctgaacggct
     6421 cattgaaccg gttttgattt gacctgctgc tgtacctact gctaaatctg caatggttgc
     6481 atcttcagtt tcgcctgaac ggtgagagat aactgcggtg taacctgcat ctttcgccat
     6541 tttgattgca gctaaagttt cagttaaaga accgatttgg ttgaatttga ttaagattga
     6601 gtttgcgata cctttctcaa taccgttttt caagattttg gtattggtta cgaataagtc
     6661 atcaccaact aattgtactt tgtcgcctaa tactttagtt tggtatgcga aaccttccca
     6721 gtcagattcg tcttgaccat cttcgataga cacgattggg tactctttgc ataagccttc
     6781 taagtagtga gtgaactctt gtgaagtaaa ggttttgcct tcgcctttca tatcgtacac
     6841 attgcgttct ttgtcgtaga attcagatga tgcacagtcc atcgctaaag ttacgtcttt
     6901 acctaacaca tagcctgctt tttctaccgc ttctttaatg cacgctaatg cgtctgcgtt
     6961 tgaagccaag tttggtgcga aaccaccttc gtcacctaca gcagtattta agcctttcgc
     7021 ttttaatact tttgcaagat tgtggaatac ttcagcaccg atacgaagag cttcttttaa
     7081 tgtagaagca cctaccggtt gaatcataaa ttcttgaatg tccacgttgt tgtcagcgtg
     7141 ttcaccacca ttgatgatgt tcatcattgg taatggcatt gagtaaacac ccggtgtgcc
     7201 gtttaattca gcaatgtatg cgtaaagcgg taagcctttt gaagcggctg ctgcttttgc
     7261 tgttgctaaa gaaaccgcta agatagcgtt tgcaccgaat tttgatttgt tttctgtgcc
     7321 atctaaatcg atcataattt ggtcgatttc agcttgtgca gaaccgtctt tgcctactaa
     7381 tgcgtttgca atttcgttat ttacggcaga aaccgctttt aatacacctt tacctaagaa
     7441 acgacctttg tcgccatcac gtaattctaa tgcttcacgt gaaccggtag aagcacctga
     7501 tggagcggct gctaagccta caaaaccacc ttctaagtga acttctgctt ctacagttgg
     7561 gttaccacga gagtcgatga tttcacgacc gattacttta acaattttag ccattgttga
     7621 tgtcctctaa tatacgagtt aatagaaaaa agaataggta tatagtaaag cgattttctg
     7681 cttttgtctt ggaaaaactg attgagtggc agaaaatttg ccactaattt gatctaagac
     7741 tatattcgcc tgagattata gcaacctttg caaaaaacgg caaaaatttg cccgcttgta
     7801 atgcttattt tttgactaaa aaagtcaagg tttcataatg tgctgtgtga gcaaacatat
     7861 caaacagctg cactttgtgt agttcgtaat ttgtcaaaaa tgtaaaatcg ttcgccattg
     7921 agacggcatt acaactggag taaatcaaat aaggtgagcc taattgattt aaaaattctg
     7981 ctaatagttt gccgatacca cgtcgaggtg ggttcacaat cactaaatcg ggtggagaac
     8041 cagcttcatt taaagcaaat tgtgcagaat ctaatgaggc aaattttacc tgctttaggc
     8101 cgagtttttc agccgatttg gtcgcacttg caatagctga ggctgaaatc tcaatgcctg
     8161 tcagctccac gttcgagttc ttcgcttgca aggcgttggc acaatgtaag ccgaaaccac
     8221 cgacaccgca gaacaagtcc cacaatttag caataggtaa atgctcaatc cagctttgtg
     8281 ctgtgtggta aagctggctt gctaccacag ggttagtttg gaaaaagccc tgagggcgaa
     8341 taaatagcgg tatgccgtta aaatgttctt ccagcacttt ttgttcggtg aggaaaatct
     8401 cagtttcgcc ttctaaaaga gcagcgtgtt ggggctgaat attcagacta actactgagt
     8461 tgggtggcag tttttccaac agttcgggca attcccgttc aaccaatgca cgctttgctt
     8521 cactacgaac cacaaaacgg agcataaatg attgattata ttggctttcg gtaatcagaa
     8581 tatattttag ctcacctttt ttcttactga tgttatacgg cactaaacca gctcgagcga
     8641 taaaatcttt caaaatcgga aaaagtctat gaaatgagga cgggtagagc agacagtcgg
     8701 ttaaatccac cccgctttga gcatcatttt gatcttttaa aatgcctaaa atcgggcgtt
     8761 ctacactgcc ggagaccacc attttcgctt tgttacgaaa ttgcgaaatt ggcgagccga
     8821 caagcggtaa gatttccgtt ttattttgca aaataaacgg caaaatcaac cgcttgagat
     8881 cggcctcttt ggcggctaat tgcgtgctgt atggcttttc aatccactgg cacgaagtac
     8941 agtcgccacg ctcaaaatgc gaacaatgca acaagctaga cattcgcttc cttccattcc
     9001 agccagttgt tttgtaaggc cgttaattca gcctgagttt gttggtagcg agagctgttt
     9061 tccagctctc gccaagtcac ggttttgcgt ttcattaaag aaaggcgacg ttctttttgt
     9121 gcttgagtcg gctgatattt cagcccgtct aacacttgca ccaggccttc aggctcgtta
     9181 caaaggagca ataaatcaca gccggcttgg attgcttttt cagaacgctc gacaaaattg
     9241 cccataaagc ccgcaccttt cattcccaaa tcgtcagaga atatcacacc gttaaagttc
     9301 agctgtttac gcaatacctc tttaagccaa tagcttgaac cgcttgccgg ctggctatca
     9361 cattgggtgt aaacgacgtg ggcaggcata atggcagaga gttttccttt ggcaataagc
     9421 tgtttgaacg gcagaatatc gtgattaaaa atccgctctt tcgggcgatc atcaaacggg
     9481 gtttctaaat gcgaatcggc taaaacgtgt ccatgaccgg ggaagtgttt gccggtggtc
     9541 gccataccga tttcacgcat tccgtcaata aaggcttcgg caacaggcaa aatcgctgct
     9601 ggctcttgcc cgaatgagcg atcgccaatc gctttgcatt cgtgtcctaa atccagtacc
     9661 ggagcgaaac tgaggtctat atcgagggca aacatttctg ctgccatcaa ccagccggtt
     9721 tctttcgcta attgcattgc ttgctctggc gttgtggcaa gttggttaaa agattgcatt
     9781 gccggcagtt tagtaaagcc ttcacgaaag cgttgcaccc gaccgccttc ttggtcgaca
     9841 gtaataagca acggtttttt cacccgctgg cgaatggatt tcactaatgc ctgaatttgt
     9901 gctttgtcgt agaaattacg ggtgaataaa attagcccgg aaactaaagg gtgttccagc
     9961 atttcgactt cttcttgagt cagttcttta tctttaatat caatcagtaa cataattttc
    10021 gttgagctat ttgcaaaaaa atgagcagat atgaccgctt gttgtgccta ttctacatta
    10081 aaaagccctt gatgttgatc aagggcgaat gattaagggc ataaatgaga cagagcaatt
    10141 atgcttgttc taatttagct tggttacgac gcatttttat gttgagcatt tcaaccacaa
    10201 ccgagaagcc cattgccgta taaaccgctg cttttggaat atgaatatca aaaccttcgc
    10261 cgactagtac aataccgatt aaaatcaaga acgctaaagc gagattttta atggttgggt
    10321 tgttatctac aaagtcccca atggttttcg ctgctaacat cattaccgca actgcaatga
    10381 taatcgcaat aaccattacc ggaatatcat ctgccattgc cacagcagta atgactgaat
    10441 caagggagaa aataatatca aaaattgcaa tttgaattaa caccataaaa aagctggctt
    10501 ttttaatgga ttcgcttttt tcttcgtgag attcggcaga aatggattct ttcagctcca
    10561 ttgcactttt aacaatcagg aataatccac cgatgagtag aatgagatct ctacctgaaa
    10621 ttggattgtt gccaatagtg aaaagaggct cgaccaaacg catcatccaa gcaagcgaga
    10681 gaagcaataa aatacgggtt cccattgcca gccccaagcc gataattcgg gcagattggc
    10741 gttgttcaat aggtaaacgg gaaacgagaa tactgatgac gatgatgtta tcaatgccta
    10801 atacgatttc aagcccggta agtgtaaaga gcgcaaccca agcttcagga tttgtgatcc
    10861 agtcaaacat aaaaatgtcc ttttaaaaat aagggattaa gtgatatttt ctatcaaata
    10921 gaattaaagc cgacatctta tagagtgtga ggacaaattt aaagggggca atgcaaaaag
    10981 ttttgtaaaa tttcggcggt aaaatgttta cgcaaataga aaccaagagg gagagattga
    11041 acaatctccc ctttagcgtt gatagcagag gtgatagagc ggttatttct acctttgggt
    11101 ctgagttgta acacttcgcc taaggttgca ttaattttat gcagttcacc taacacaatc
    11161 aactccatta attcctccca atcttgctgt aggcgggatt cttgtgtgat agtcggagac
    11221 cataaaatcg gctgaccgat atggcgttcg gcaaggggta tctttcgttc cccttcaacc
    11281 ggaatccaaa gcacacggga aagcttatgt ttaacgtggg aggtttccca aataataccg
    11341 ttgttttggg ttaaaggagc aaggctgacg aatgtggttt ccagcggtaa tcctttctga
    11401 ttgaccggaa tggttttcag ctcaatgcct aaatgtgcaa aatcctgttc ggctttactg
    11461 ccggctttcg cacctaaagc ggtttcaatc agagtaccga cccagccttt atctcgtttc
    11521 agatctgctg gtatcggaat atgaagcatc tcggcaattt cacctaaagt gaaccctgcc
    11581 agccattccg ctttgcttaa taatgcctgc tcggttggag agaatgtaga taattgcatt
    11641 gcacttagtt aattagacta aactggcaag cggtcaaatt taggcagaaa tttgcaaaaa
    11701 attactaaaa aataaccgct tgtgaggaaa ttacatccaa gcattactgc gaataacgcc
    11761 tactgcaatg ccttcaattt caatatattc ttgagcaggg tttactacaa tcggttttaa
    11821 ttcatcgttt tcagggtgta agtaaattaa ttcacctttc ttctctaagc gtttaacagt
    11881 cacttcatca tttacccgag caaccaccac ttgcccgtta cgagcggtat tggttttatg
    11941 aacggctaat aggtcaccgt ctaaaatacc gattttttcc attgaattgc catttacttt
    12001 gagtaaataa tcagcacttg gattaaacat cgcaccattc accgggtaat ggttttcaac
    12061 gtgttcaacc gctaaaatag gtgtgccagc agctactttg ccaatcaacg gtaagccttc
    12121 atcttcatcg ttggcagctt ggttttcgtc ttcgactaaa atgcgaattc cacgagatgt
    12181 acctgataac atttcaatat agcctttacg agcaagggct tttaagtgtt cttctgccgc
    12241 attaggtgat ttaaagccga tttcacgggc tatttctact cgggttggtg gcataccggt
    12301 ggtttcaata tggtttttga cgaaatcaaa aatttcttgc tgacgggcag ttagatgttt
    12361 acgcatttta agttaatcct cactgtcttt atatacagaa aatattgata gtatatacag
    12421 tatttttgat tttgtaacta ataatttcac gaaattccat aaaaatttat ggtagaatgg
    12481 aagaaattag aggttagacc tccaacaata acgattctaa aaggatattt atatgtctgg
    12541 cttattaaat ttttatcgag ctttcctaaa cttaccactt tcacttttag taaaatctcg
    12601 ctctattccg actcatccgg tggctgaact ggaactaaat cttgaacagc cgattgtcta
    12661 tgttctacct tatacctcgc aaaccgattt attaatttta caaaaaaact gcttggcttt
    12721 gaatttgccc gatccgttgc aagaaaatgt gattgaaggg caaacattgc ttcgttttgt
    12781 atttttagat gaaggtcgcc gtttttttaa atctaaaggg gcgaaaagtg agacagagtc
    12841 gattttttat cgttatttag atttacatcg tgctaatgct gaattagacg tccaattagt
    12901 gccggtttcg gtattatggg ggcgggctcc gggcaaagaa gatgcccgcc atttacaggt
    12961 gcttacctca ttccaacgtt ttttatccat ggtttggttt gggcgtgata attttgtacg
    13021 tttctcccct gcagtatcgt tacgctatat ggtaactgaa tatggtgcag atgaaaaaat
    13081 cgctcaaaaa atcgcgcgtg tggcgaaaat gcactttgca aaattgcgtt attcagcaat
    13141 ggggcctcgt ttaccaaatc gtgatgcgat gtttaataaa atcctgaatt cagaggtgat
    13201 tcaagctgcg attgcggaag aagcgaagaa atcatcgcct gaaaaggctc gcaaagaagc
    13261 cgagaaaatc attaatgaaa ttgccgctga tgtaaaacac gagagtttgc gtgtagcaga
    13321 tcgagttctg agctggcttt ggaataagct ttatcaaggg atcaacgtgc aaaatgcaga
    13381 ccgtgtgcgt aaattggcat tagaaggtca cgagatcgtt tatgtgcctt gccaccgtag
    13441 ccatatggac tatttgctcc tatcttatct actttaccat caaggattag taccgccaca
    13501 tattgccgct gggatcaatt taaatttctg gccggcaggc ccgattttcc gtagttgggg
    13561 agcatttttc attcgccgta cctttaaagg aaatcgcctc tattccacca ttttccgtga
    13621 atatttagcg gaattattct atcgtggtta ttcggtcgaa tattttattg aaggcgggcg
    13681 ttcacgcaca ggtcgtttat tagagcctaa aaccggtatg atgtcgatga gcctacaagc
    13741 cttacagcga gggctgaata gatctttaag tattgtgcct gtttatatcg gttatgaaca
    13801 cgtcttagaa gtcgatactt acgctaaaga gttgagaggt gcggcaaaag agaaagaaaa
    13861 tgcgggcttg gtgctacgag tgctgaaaaa actgaaaaat ttaggtcaag gatatgtgaa
    13921 tttcggtgag ccaattttgg tgaataatta cttaaatcaa tatttccctg agtggaaaga
    13981 gccttccgaa gatggacgac ctaagtggtt aaatgaagcc gtggataata tttcacatca
    14041 agtaatggtg aatatcaata aagcggcagc agttaatgcg aaaaacttag tggggtcagc
    14101 attattggca tctcgccagc gtgcattaac ccgtgaacaa ctcattgaac aacttggaag
    14161 ttatattcag ttatttcgta atgtacctta ttctaaagat atgacattac caactgaaag
    14221 tgcagaagtg atgttgaatc atgttattca tttacctcgt tcgggcgttt taattgaaaa
    14281 agataatttt ggtgaactgg ttcgtttaga acgagaatct gctgtgttaa tgacatatta
    14341 cagaaataat gtgcagcatt tatttgtgtt gccttcactt gttgcaagta tggtacttca
    14401 tcatgaggct gtttcgaaag atgttgtgat taagtcggtt aatcgtattt atccattctt
    14461 gcaagcagag ttattcttac actttaagca agaagaatta aaagcacata ttgaagcaat
    14521 tattgcggaa ctaagtcggc agggggtgat taaaaacgaa agtgatatgt taatgatcaa
    14581 tcgctcacat attcgtacct tgcaattaca ttcagctggt gtgcgtgaaa tccttcaacg
    14641 ttattatatt agcctaagtg tcttgttgga gcagccaaat attagtcgtg gctatttaga
    14701 aaaagagagt agttcaattg ctcagcgttt atcagtcttg catggtatta atgcgccgga
    14761 gttttttgat aaggcgattt tctctacctt tacatcaagt ctaaaagcac aagggtattt
    14821 tgatggtgat gataatttag cgattgcaaa agttaaagaa acggaatcgt tgttacgtag
    14881 tttgatttcg attgaagttc aacagaccat tcaaggtgcg atggctaaag tcgcagaatc
    14941 tgtagagaat cctaatatcg caggataata aatcaaagaa gggcgctaac aagcgctcgt
    15001 ttcttgcaat tttgttgcca aaaataaaag ctgaatgcgc gaccacattc agctttttta
    15061 cttcctatat aattattttg gttcaccgat tggtaaaaca gtcttaccaa aactttcatt
    15121 aataatatcc gcagcggcta agtagaacgc taagaatgcg gttaataaac cgaagttacc
    15181 accaatgtta gttagggtgg tgttatgggt aaaatcacct gcggctaaaa ggtagaaagt
    15241 aatggttaaa cttaagaaaa tagcttgtaa tgcacgggct tttgctagtg tgccgatgaa
    15301 catcataagt gtgaatgttc cccaagctac taagtaccaa ccaacgaatt ctgccgatac
    15361 attcgcagca aagaacactt taaataatgc aaaagaccac cagaatgcac catagctggt
    15421 aaacgcagta aagccgaacg tgttaccttt agcaaattca aacatacctg caatcatttg
    15481 tgatgtgcca ccgaaagcaa atcccattgc taaaactaaa cctacgtttt caccgctgaa
    15541 tgtaccgtta ttgattaggc ttagtaaaaa tgtagtaagt gcaaaaccgc ataaaccgag
    15601 cggagccggg ttagttcctg aatttggagc tgacattgaa aacctctgtt atattgttac
    15661 accataagtg tggtaattgt ttatttacgc cgataaatca gacgttatgt gcctaaaatt
    15721 tagggcgata aagtatagcg attttgcagt aaattgacta gaaatttccg agacaagcgg
    15781 tgagattttt gcaaaatttt gccaaaaaat gaccgcttgt tgttgtcatt tagctatgga
    15841 tttaactgcc gatattggct gggtgttacg caatattgct ttttaaaggc ggtaataaaa
    15901 tgcgactcgg attggaagcc gcaagataag gcgatactta ataccgaccc agcttggctt
    15961 ttgagcagca ttgctgcttt ttgtagccta attttgtgta caaaagcatg tgggctaata
    16021 cataaatgtt tgttaaataa gcggactaac tgggcacgag aaaggtggat aaatgccgcc
    16081 atatcatcga cttgccattc gtgttcggga ttaagcaaaa tagctttgat caaaggtctt
    16141 aagtgtaagt cttgccaacc ttttaaaata ccgaataact gattgttatg gttaactaga
    16201 tgttctcgta agatcatagt taaaataaca acagcaagcg agttaaccac agattttacg
    16261 gctaaattag gtgtttctgc ttcttgtttt agaatatcta acattgcttt taatggtgtc
    16321 tcggcaactt gaaatacgat catttcaggt aagctttcca ttaattcggc ttgatggtca
    16381 taataaaaat ggaggcagaa catatcgcat tctgattgag aaagtcctgc ttgggtgagt
    16441 gtaaatgcac ccaattgttc agggtttacc gcatttttgc tggtcaaagg ctgtatttga
    16501 ctacgtaatg tatgatcggc aaatctgggg aaaaatacaa tatctccctg tttaaggtga
    16561 tgggttttcc cattatgttg tagataagct tgcccatagc tgatgatatg agcgattgct
    16621 tgtccggttt gatgcggatt ctcaagttgc caatctccct gtaactgaca tttcacactg
    16681 attccggctg agatttgagc gaaagctaga agcctatcta atatatccat tgttcattcc
    16741 ttatatttcc accttaaatt gcgattattt cattataata tgagctgatt tgataataaa
    16801 gtttatcaga taaacgcaat aataaatgcg ttttttcata ttattcactt taggaggaaa
    16861 tcaatatgtc ttcattccaa aattggacag aacacacagc tcacgttaag caatcttttg
    16921 gtaaattagg gcaaaaacac cctaaaatgc ttgaagctta taaagcatta ggtacagcgg
    16981 ccgcagcgga agcattagat cacaaaactc gtgaattaat tgcattagca gtagcgatta
    17041 caacacgttg tgaaagttgc atcagtgtac acgcagaaga agcggcaaaa gcaggtgcaa
    17101 ccgaaagcga aattgccggt gcattagcga ctgcgattgc attaaatgcc ggtgcggcat
    17161 atacctatgc tttacgtgca ttagaagcgg tggaagagca aaaataagga gcaataaatg
    17221 aagaaattgg cttggatttt aggctttgca gctatgatgc caatgatgtc tagtgctaaa
    17281 caagcatcag ttcagcaagt gcaggctgaa aaagcagcgg gcatttggat tgatgtacgt
    17341 tctgctgaag aatttcagca agggcattta aatggtgcaa ttaatgtaac gcatactgaa
    17401 attgcacaac gtatcgcaga agttgctcca gataaaaatc agccgattca tctttattgc
    17461 cgctcgggtc atcgagctga agcggcgctt aatgagctaa aaaaattagg ttacagcaat
    17521 gtaactaatc atggtggtta tgacgatctg attaaagccg ggttgaaata actgttttga
    17581 gtgccaagca tttgcttggc acttttcgtt tatatctgag gttaaaaatt atgagtgctt
    17641 ttaacaattt tgttaatttt gttgcaaata ttgttgctcc aatgcaacgc caattcatta
    17701 actttgtacg tattgccatt tgtatcgtga tggtttggat tggtggttta aaagtctgcc
    17761 aatatgaagc agacggtatt gcccattttg tgtctaatag cccgttcttt agttatatgt
    17821 acaaaaaagg cccgaattta gttgatgacg gcacaggtaa aatggtgatg gaatataccc
    17881 ttcacaaaaa ccctgaaggt aaaatggtgg caaaaaacat cgaatggcat aaagaaaacg
    17941 gcacttatac tgcatcttat atcatcggtg caaccattgt gacggttggt ttattgacgt
    18001 tatccggtat ttggttcccg gtttccggta tggcgggggg cttactcacc tttggtatgt
    18061 cgattgttac actctctttt atgatcacca cccctgaaat ttgggtgccg aatttaggtg
    18121 gggatatgcc aaccccagcg catggtttcc catatctgtc agcagtcggt cgtttaattg
    18181 tgaaagatgt gattatgatg gcaggcggct tggttgccgc agcggaatgt gcaaatcgca
    18241 ttttagccag acgtaaagcg attgcttaat tgatagtggt aatgcaagcg gtcattttct
    18301 tgtaaaattt tgcaataaaa tgaccgcttg ttttttgtca atttgccata atttcaagta
    18361 taattcaatt acgtaatcgt ttgcttttat ggagaggaat aaaatgacaa caatcggtac
    18421 accgttaaga acgaacgcta caaaagtgat gatgttaggt tcgggcgagt tggggaaaga
    18481 agtggtaata gagctgcaac gcttaggcgt agaagtgatt gcggtggatc gttatgacaa
    18541 tgcacctgca cagcaagtgg ctcaccgtgc ttatacgatt tcgatgttag acgggaatgc
    18601 attgcgagat ttggtggaga aagaaaaacc ggattttatt gtgcccgaag tagaagccat
    18661 cgcaactgca accttggttg agttagagca agagggatat aacgtaatcc caacggcaaa
    18721 agcaacgcaa ttaacaatga atcgagaagg cattcgccga ttggcggcag aagagttggg
    18781 cttaaaaacg tcgccttatc gttttgtgga taattttgaa cagttccagc aagcgattca
    18841 agaaatcggc attccgtgtg tggtcaaacc gattatgtct tcttccggac acgggcaatc
    18901 agtaattaaa tctgaagcgg atattcaaca ggcttgggat tattcgcaac agggcggacg
    18961 tgccggcggt gggcgtgtga ttgtagaggg ttttatcaaa ttcgattatg aaattaccca
    19021 gcttaccgtt cgccatattc acggcacgtc gtttttagct cccatcgggc atattcaggt
    19081 tgatggcgat tatcgtgaat cttggcaacc gcagcaaatg tcggacattg cattgaaaaa
    19141 agctcaagaa accgcagaaa aaattacctc tgcactgggc ggaagaggga ttttcggcgt
    19201 ggaacttttt gtctgtggcg atgagattat ttttaacgaa gtctccccac gtccacacga
    19261 taccggaata gtaacaatgg catcacaaga gctttctcaa tttgctctgc acgcccgtgc
    19321 gattttgggc ttaccgattc cggaaattta ccgcatcagc ccggcagctt ctaaagcgat
    19381 tgtggttgaa gggaaatcgg ataatgtgcg ttttggcggt gtagataagg tattagccga
    19441 aatcgggacg aatatccgct tattcggtaa aggcgaagta aacggacacc gccgattagg
    19501 ggtaattctt gctcgtgatg aaaatacagt gagagcatta gaaaaagctc ggcgagctta
    19561 tgataagtta gatattcaat tataaagtca ggattttgat attcgttgat agtaggcatt
    19621 ttatgcctac tatcctatag gcctctaatc aaattggatg aaaaagttga agattgttaa
    19681 tcctctttgc cgagaatttg gttcacttcg ctcttataca atactgcttt tgctccaaat
    19741 acggcttgta caccgccacc gacttccagc acgtcaatcg caccgagttt tttcagtgtt
    19801 gctttatcca cggctttcac ctctttcact gccacacgca gacgggtaat acaagcatcc
    19861 acattttcga tattatttgc agagccaaga gcggcgataa ttttatgggc attttcagtc
    19921 agtgagctgg tttgttgttc gactacctct tcactctctt ccgcacgtcc cggtgtcatt
    19981 acgttgaatt ttttgatcag gaataggaac gagaagtagt aaagtgccgc ccacggcaag
    20041 ccgactatga tcactcgaag ccagttagtg ttctcgttgc cttgcaaaat gccaaacagg
    20101 gtgaagtcga tcacgccacc ggagaaggtg ttaccaatcg agatgttgag taagtctgca
    20161 atgtagaacg acacgccgtc taaaaaagcg tggaacacat agagccacgg ggcaacaaac
    20221 aggaacataa attcaatcgg ctcggtaatg ccggtgataa aagaggtgag cgctgcacct
    20281 aagaacagac cgctaatcgc accacggcgg gctttcggca cagcgtgata catcgctaaa
    20341 caggcggcag gtaagccaaa catcatcgta tcgaaacgtc cagcgaagaa acgtgtacct
    20401 tcggtaaata agccttgatg ggttggatcg gcgagttggg cgaagaagat tttttgcgcc
    20461 ccgataatgg tttcaccatt taccacttct gttccgccca attcggtgta ccaaaacagc
    20521 gggtagatca tatggtgtaa gccgaccgca ccgcttaacc gcattaagaa accgtagaaa
    20581 aaggtgccga tttcgcccat ttccgcaatc ccttgccctg ctgaaaccaa ccactgttgg
    20641 aaagccggcc agatcaaaaa gaacactgcc ccgacaaaaa tcgcagcaaa ggcggtcaca
    20701 atcggcacaa accgagagcc gccaaagaag ccgagaattt gcggcagctg aatgttgtgg
    20761 tatttgttat gcagtttcac cgtaatcaag cccattacca gcgagccgat cacaccggta
    20821 tcaatccctt tggtttcagg aggaaacagc ggaatgaggg cagaaatcgt gcctgtcata
    20881 atcaaataac cgaccactgc tgccagtgcc gctacgcctt tatctcgttt tgctaatcca
    20941 atgcctaaac cgatacacag taataatgca aggttgccaa acaccacact gcctgccgat
    21001 gccataatct ggaaaatgcc ctgtaaagtc gggttatcca gtatcgggta ggcttgcacc
    21061 gttgccttat tcgacaaagc tccgccaatc cctaacagca aaccggctgc cggtaaaatc
    21121 gcaatcggca gcataaaagc ttttccgact tgttgcagtt gtttgaacat aaaatttctc
    21181 cttttttatg gttgtatttg atggtttata gcatactgaa atttagccgt atgaggtgtg
    21241 atataactca cagatttgca aaatttttag caaattcgac cgcttgtaaa aaaattaccg
    21301 cttgcggaaa aattgaagta gaattaagca tttttttagc aaacacaaca taaaaaattt
    21361 ggagaagatt atgcctattt tacgttcagc aacttccact cagggtcgta atatggcggg
    21421 ggctcgtgca ttatggcgtg caaccggtat gaaagaaaat gattttggta agccgattat
    21481 tgcagtggtg aactcattca cccaatttgt gccggggcac gtccacttaa aagatatggg
    21541 gcagttggtt gcggcagaaa ttgaaaaagc cggtggggtg gcaaaagaat tcaacaccat
    21601 tgcggttgat gacggcattg caatgggaca cggcggaatg ctttattctt taccaagccg
    21661 tgatttaatt gcagacagtg tggaatatat ggtgaatgct cactgtgctg atgcgatggt
    21721 gtgtatctct aactgcgata aaatcacccc gggaatgtta atggcagcaa tgcggttaaa
    21781 tattccgact atttttgtct ctggtggccc gatggaagcc ggaaaaacta aactttccga
    21841 tcaattaatt cgcttggatt tagtcgatgc aatgatcgaa agtgccgacc cgaatgtgtc
    21901 tgatgaacgt attgatgcga ttgaacgtag tgcttgcccg acttgtggtt cttgttcagg
    21961 tatgttcacc gcaaactcaa tgaactgttt aactgaagct ttaggcttaa gtttaccggg
    22021 caatggttca atgttggcaa ctcatgctga ccgtaaagag cttttcctaa gagcaggtcg
    22081 tgaaattgtg gaactttgcc gtaaatatta ccaacaagac gatgagagcg tgttacctcg
    22141 ctcaatcgct accttcgatg catttgaaaa tgcaatgagc cttgatattg caatgggtgg
    22201 ttcaagtaat accgtgcttc atttactagc gactgctcaa gaagccggcg ttgattttaa
    22261 aatggaagat attgaccgcc tctctcgtgt cgtgccgtgc ttaagtaaaa ttgccccgaa
    22321 taccaataaa taccatatgg aagacgtaca ccgtgccggt gggattatgg gcttgctggg
    22381 cgaattagat cgtgcaggtt taatccatcg ccacgttaaa acagtgctag gtttaacgat
    22441 agaagagcaa ctgaatcaat acgatattat tcgtaataaa gatgaagatt tacacaaatt
    22501 cttccgtgca ggtccggcag gaattcgtac tactaaggct ttctcgcaag attgccgttg
    22561 ggacactgtt gatgatgacc gtgtaaacgg ctgtattcgc aatgtggaaa atgctgtgac
    22621 caaagagggc gggttagcgg tattatttgg gaatattgca gaagatggat gtattgttaa
    22681 aaccgcaggg gtagatgagt ctatttggaa attcactggc accgcaatcg tgtttgaaag
    22741 ccaagaagat gcggtagcag gtattttagg cggaaaagtg aaagaagggc atattgtgat
    22801 tatccgctat gaaggtccga aaggcggccc gggtatgcaa gaaatgcttt atccaactag
    22861 ttatttgaaa tcaatgggct taggcaaaaa atgtgcttta ttaactgacg gtcgtttctc
    22921 tggcggtacc tcagggttat ctatcggaca cgcttcaccg gaagccgctt caggaggagc
    22981 gattgcctta attaatgatg gcgatacggt ggcgattgat attccgaatc gttcgattaa
    23041 cttaatggtt tcagatgaag aacttgctgc tcgccgtgca gaaatggaag cccgtggcga
    23101 taaagcgtgg cagccgctaa aacgtgagcg agaagtgtcg tttgcactaa aagtgtttgg
    23161 acattttgcc acctctgctg ataaaggtgc ggtgagggat aaatcgctgt taaagtaaat
    23221 aaattagaaa aaagaagcat ttcaataata tattgatctg ctctttattc agctgaatat
    23281 ttaatctagc tgaatggaga gcagatcgat agcctaattt acatcttttt gttttgatac
    23341 agggaaatgt attacaagca ttttgccggt tttggcagac ctgcaatttt agtggcttgt
    23401 tttgcaggac catcaggaaa caagcgttgt aaataacggc tgttgccttt ttcttcaccg
    23461 aatttttgtg ccattgtctt taccagcatt cgaattgctg gtgaagtttt gtattcttgg
    23521 tagaaatccc gcaccagata aataatttcc caatgttctg cggttaagct aatttgctct
    23581 ttttcggcga ttttttctgc taattctaca gaccaatcat ttaaattagt taaatagcct
    23641 gaagcatcgg ttgggtattg gatattattt aattcaatcg tcatcaaata aaaatgccac
    23701 ataatgtggc attcctctta aactaaaacg ctagtcgtca ctacctagca caccgaagat
    23761 ttgtaagaag cttacaaata ggttgtagat agacacatat aaatcaacgg ttgcacgaat
    23821 gtagttggtt tcgccaccgt gaataatgtt gctggttgcc agtaaaatcg caccgcttga
    23881 gaaaatgaca aacaagctgc ttagggctaa acttaatgcc ggaattgcta agaagatatt
    23941 ggcaataata ccgactaata ataccacaaa cagggcaacc atcattccgc tgataaagct
    24001 catatctttt ttggtggtta atacataagc tgaacaagcg aagaaaacca atgcggttgc
    24061 accgaatgca agggcgacaa tatcccctaa acccgcaccg atgtaacggt ttaaaatagg
    24121 acctaaggta tagcctaaga agccggttaa agcaaatacg cttaagatac ccgcactgct
    24181 gtttgaggtg gcattcgtca agaaaagtaa gccgtaaaag ccgaccaata atccccacca
    24241 cggcatagcc ggtgcgttca tttgaattgc aacaaaagca acaactgcgg agaaagtcag
    24301 ggtcattgcc aataacatat aggtattgcg aagcactttg tgggtgctaa ttagagattc
    24361 accagttgaa tagctgtgag ctaaacgatt ttccataaaa attccttctg tttttgtgtt
    24421 taaatcggaa catccgatgg attaatatct atggataaat ttccataaat caagaagtaa
    24481 ggtagccgta atttattgta aagtcaatgc gattttgtaa cagaagagta aaaaaaaaca
    24541 tttagttgtg ttacacttaa taccactcta ctttatattc cttttcatcg atgaattcgc
    24601 tatgaagctc aatttcccaa cttatttaac cttatttcgg gtaggattaa ccccactttt
    24661 tattgtggct ttttatctgc cgacaaaata tgcgcctgaa atttcaacac ttattttttt
    24721 tattgcatcg attaccgatg cctttgacgg ctatttagca cgcaaatgga atcaaaccac
    24781 ccgacttggt gcatttttag atcctgttgc ggataaagtc ttggtagctg ttgcgtttgt
    24841 ctgcgtggcg gagtattacc atacttggtg gattactatt ccaatctgca ttatgattgc
    24901 ccgtgaaatt attatttcgg ctttgcgtga atggatggcg gagcttgggg aaagggccag
    24961 tgttgccgtt tcgatttggg ggaaagtaaa aacgactgct caaatgctcg cattaggtgg
    25021 aatgttatgg agacagaacc aactaatgga gattttagcc tttattctgc tttatattgc
    25081 agtgggttta acgatctggt ctatgatgca gtatttaaat gcttcaaaga atagtctatt
    25141 gaagtcataa gcggtcatat ttttattctt ttttgcaatt tgtagagtgg aaatatcgct
    25201 ctacaatttt caattttatc aactctaatg tctgaattta acgctaaatc cttcctgtta
    25261 aatgtgcctc accaaccggg tgtttatcgt atgtatgata gtaaaggcac gataatctat
    25321 gtgggtaaag ccaaagattt aaaaaagcgt ttagccagct attttcgtag ccaactttcc
    25381 agtaaaaaaa cggaagcctt ggtggcaaat cttgctaata ttgaaacgac gatcactcat
    25441 tctgaaacag aggcgttact ccttgaacat aattatatta aggaaaatca gccgaaatat
    25501 aatgtgttgc tcagagatga caaatcttat ccttatattc tgttaactaa acataagcat
    25561 cctcgtttaa cagcatttcg tggtagtaaa aagatcgccg gtgaatattt tgggccttat
    25621 ccgaatgtta cggcagttcg ggaaacactg aatttattgc aaaaaatttt tcctattcgt
    25681 cagtgtgaag atacttatta taaaaaccgt tcacgacctt gcttacagta tcagatcgga
    25741 cgctgtttag ccccttgtgt agagggctgt tattcacccg ttgaatacga tcagcaggtt
    25801 aatttggttc gtttgttttt acagggaaaa gatcaccaag tagtcgagca tctggtacag
    25861 aaaatggaag atgcggcgga ggctttggat tttgaaggtg cggcacgttt tcgggatcaa
    25921 attcaatcag taagagcggt gcaagaaaaa caattcgtct ctaatgatag gctagatgat
    25981 cttgatatta tctcgatcgt ttatcaaaat gggattgcct gtgtgcatat cttatttgtt
    26041 aggcaaggta aggtactagg caatcgttct tactttccaa aagtgccaag taatacagat
    26101 ttaaccgagc tcgcagatac ctttgtcggt cagttttatt tacaaatgaa ccagcaccgc
    26161 accataccta accaaattgt aattgatcat caattaagtg aatctaaggc actcagtgaa
    26221 attttaagtg agcaagcagg gcataaagtc agcattttag ataatgccat cagaggtgat
    26281 aaacagcgtt atttagcttt agcgagaact aatgcaatgg cagcattagt tttacaactt
    26341 aagcaagaat cccatattca aagccgttat caggcattga aagaaatgtt gaaaatgtca
    26401 gagattaaaa gaatggagtg ctttgacatc agtcatacaa tgggcaacca aacagtggct
    26461 tcttgcgtgg tgtttgatga aaatgggccg ctaaaatcgg attaccgccg ttttaacatt
    26521 gaggggatta ccggaggtga tgattatgca gcaatggagc aggctctctt gaaacgctat
    26581 aatcgagaat taccgccaga aaagatccct gatattattt ttattgatgg tggcaaaggg
    26641 cagttgaacc gagcgttaga tgtcttcgct aaacttgatg tggaatggga taaatcgaaa
    26701 ccgcttttaa ttggtgtggc aaaaggcgta gaacgtaaag ctgggctgga aactttaatt
    26761 atcagcaaat gggataaaga aattcactta ccgccagata gtcttgcctt gcatttaatt
    26821 cagcatattc gagatgaatc ccaccagcat gccattagtg ggcatcgtaa aaaacgccaa
    26881 aaggccttta ccgaaagtgg attagaatct attgccggtg tcggtgcaaa acgccgacaa
    26941 gcgttgctaa aatatttagg cggaatgcag ggggtgaagt ctgcaacctt ggaagagatt
    27001 caatcagttc cgggaatttc taaagcgttg gcagaggtta tttttgatac attaaaaaat
    27061 agttaaatta tcaatagcga tatcgcttcc agccgtaatg gtagcccact cctatgcttg
    27121 ggtaaattat agggtgaatt ggcagattta tgctttctga gcgtttatcg ctttggttta
    27181 atggctcatc atgttgcttt gtatttttat caacagtttg cttattgatt actcgttgat
    27241 ggtaatcctg aactgcttgc atatccattg gtactgtgct ttgttgttgg ggtgtcgaac
    27301 aggcggttag tgcaacgctc aatccgagta aaattaattt tttcatatca tttccttata
    27361 ttgcaaaata ttttgctttt ttgaccgctt attttgctat taattcttaa aaagattatt
    27421 ttatccataa aaaaggacgc actaggcgtc ctcatttcta ttctttaaaa ttaaagagca
    27481 gattttgctt tttcaactaa agctgcgaaa gcaactttgt caaatactgc gatgtcagct
    27541 aagatcttac ggtcgatttc aacagatgct tttttcaagc cgttgatgaa tttgctgtaa
    27601 gataaaccgt tttgacgagc tgctgcgtta atacgagcaa tccataattg acggaattga
    27661 cgtttacgtt gacggcggtc acggtaagca tattgagcag ctttaactac tgcttggaaa
    27721 gcaacgcgat acacgcgtga acgtgcacca taataacctt tagcagcctt aagaactttc
    27781 ttatggcgtg ctcttgcaat aacaccacgt tttacacgag ccattattta atctcctaat
    27841 tgtctatttt gattggtggt cgtcatcacg acctttacta agaattctat ccgtacgtcc
    27901 gtactttact acactacgct aacctaaaag gcttatgcgt atggtaagca cgctactact
    27961 aaaacttggt cagctttcgc taccattgat ttgtgacgta attgacgttt acgtttagtg
    28021 gttttcttag tcaaaatgtg acgtaagtga gattgtttac gtttaaaacc gccggaagct
    28081 gtttttttga aacgcttagc agcaccacgt actgttttaa ttttaggcat tgttaaaaaa
    28141 ctccgcattg tttgttagat attatgaaaa taaggcgaat tttgtgaaca aaattacttg
    28201 gaagcactta ttctccgcta tacgattttc atcgttaaaa agtcaagcag gctgctgagt
    28261 ttgcctgttg agcattttct ctttcttggc taggcaaaaa agcttgcgaa ttttagcgaa
    28321 aatataaccg ctatgcaagc caatttaagc tttatcaaga aaaaagcaca ttaaaacaat
    28381 gtgcttatcg aaattatttc ttcttaggtg cgatcaccat cacaacttgg cgaccttcca
    28441 atttgcctgg ggctgactct accattgcaa tttctgcagt atctgctttg acacgttcta
    28501 aaacgtccat accgatttct tggtgagcca tttcacgacc acggaaacgc actgtgattt
    28561 ttactttatc cccatcttct aagaaacgga taatgctacg aagtttaact tgataatcgc
    28621 catcatcagt tcccggacgg aatttgatct ctttaacttg aacaactttt tgttttttct
    28681 tttgttcttt tgctgctttc tctttttcgt agatgaactt accatagttc ataatacgac
    28741 aaactggtgg ttcagcattt gggctgattt ccactaaatc caattcagct tcttctgctc
    28801 tatttagagc atcttgaagt gatacaatac caacttgttc gccgttttca tcggttaagc
    28861 gaacttcttt tacgccacga atttcgtcat taagacgatg tgcacgattt gattgaacac
    28921 gttttacagg tttaatagcc ttattccttc tagtaaattt ttgcttaaat tttaccgctt
    28981 gagagcgtat aaatatttta gattgcttgt tttaagtgat taaaaaacag ctaaacgtgc
    29041 ggattctata agattttcag tgcttatgca ataataaagc ccttatttaa ctgcctattt
    29101 tcggttattt tgatattctt tgattaaact cataaatgct tgcccaaatc gttcaaattt
    29161 tcgttcacca acaccattaa tttctaacat ttccactttt gaagtcggga gaaattctgc
    29221 catttcttgc aaggtggcat cgttaaagac gatataaggt ggaatatttt cgaggtcagc
    29281 tatctgcttg cgtaaaaaac gtaagcgtgc gaataggtct ttgtcatagc gatgacttgc
    29341 ttgtttttgc acaaatgcag tcgcagatat acctaaacgt ggcaatgcaa gctgaagttg
    29401 cttttctcca cgcaaaaatg gtctggcact ttcggttaat tgcagagcgg aatggttagc
    29461 aatattttga ataatcaacc ctaaatgaat cagttgccgc accacatttt gccaataatg
    29521 ttggctttgt tcttttccga taccataaac ggaaagttga tcgtgttgat gttcacgaat
    29581 tttgagattg ttcattcctc gcaataccgc aataatatgg tgctgaccga aaatttgacc
    29641 ggtgcggtaa atcaccgaca tcactttttg ggcatcaagt aagccatcgt attgttgcgg
    29701 tggatctaaa caaatatcgc agtttttgca ttgctcttgg cgatgttccc caaagtagtt
    29761 gagtaagact aaacggcggc aagtctgtga ttcggcgaaa tcgccaattg cctgtaattt
    29821 atgctgttta atatttctct gttcgctttc cggctcttcc aataatattt tttgtaacca
    29881 agcataatcg ctaggatcat aaaaaagcac ggcttcagaa gggagatcat ctcgcccggc
    29941 tcgtccggtt tcttgatagt aagattcgat agagcgaggt aaatcgaaat gtaccacaaa
    30001 acgtacgttg gatttgttga tccccatacc aaacgcaata gtggcaacca caatttgaat
    30061 atcatcacgc tgaaaggcat tctgcactcg ttctctctgt tcaaaactca taccggcgtg
    30121 atagcccatc acgctgattt tacgggctga gagtttctcg gtgatttctt ccactttttt
    30181 gcgactgttg cagtaaacaa taccgctttt gccttgctgt ttgctgatga atttaatgag
    30241 ctgttcaagc ggtttaaatt tttcctgcac ggtgtagcga atattggggc gatcaaagct
    30301 gcctaaatag atatgtgggc tatttaagcg taaatgatgc agaatatcgg agcgggttgt
    30361 tagatctgcc gtggcggtga gtgccatcaa cggcacattc gggaaagtgt ttcgtaagcc
    30421 acctagcagg gtatattcag ggcggaaatc gtgcccccat tgggaaacac aatgggcttc
    30481 atcaaccgca ataaagctga ttttacatag cgaaataaag tggaaaaagc cttgagtcat
    30541 taccttttca ggggaaagat agagtaattt taattgaccg gataaggctt tttgttccac
    30601 aagttgctgc tcttcgagcg tttgagtgga gttaagataa gctgcttcaa tgccgttggt
    30661 gataagttga tccacctggt ctttcatcaa cgaaataagc ggcgaaatca ccaaagtgat
    30721 gccgtctagg cacaaagccg gcacttggta gcaaagggat ttgccaccgc ctgttgtcat
    30781 aatcacgagg caatcacgat tttccaacac ggcattgata acttcttctt gcccgtctcg
    30841 gaatttttga tagccaaaaa tattatttaa aacagaaatt gcggtggtgt tcattggtag
    30901 ttggttgcta cttatgatag tactcgtctt ctgagagtat cttttaaaat gaaaataaag
    30961 cactcatcaa agacgagtgc tgtcttagtt aacaattagg cattagaaag aaacgctttc
    31021 tccgtgtcga gcaaaagctt cttctaaatg ttgccagaac gagcgacctt catctgttac
    31081 ccattcgcct tctacatttt taaagtggaa accacccaat ttgctggcaa gccataattc
    31141 cagcattgcc tcttgtttat taatgataac ttgcgattca tcatcaaagg ttaaggtgca
    31201 gaccgctcct tggatttcag tatcgactga taatccttcg tcataaattt tttcttcaat
    31261 ttgttgccat acttgctcta cggcttggtg gaattgtgct gtgttcattg gtgtatcctt
    31321 atttgaatgt tatataagta gtaaatactt tttgttttag ctgtttaaat ggtctgtaaa
    31381 gttctttttg tatttttgtt aagaaataat taggcttttt aagtttagct tgatttttta
    31441 ttttatcctc attattacaa cgaatagctc tatcatcctg taatgagctt ttaaaatta
//
LOCUS       DANLXK010000014        30837 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.014, whole genome shotgun sequence.
ACCESSION   DANLXK010000014 DANLXK010000000
VERSION     DANLXK010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30837
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            14..1150
                     /gene="ompA"
                     /locus_tag="PXD88_000547"
     CDS             14..1150
                     /gene="ompA"
                     /locus_tag="PXD88_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL6280158.1"
                     /translation="MKKTLVALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQF
                     DNTYDYGSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTT
                     FSGDDKEKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSR
                     IKVHNLKPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQ
                     YSPDIHSVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDA
                     AHAEISNLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAV
                     GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
     gene            complement(1216..1662)
                     /gene="matP"
                     /locus_tag="PXD88_000548"
     CDS             complement(1216..1662)
                     /gene="matP"
                     /locus_tag="PXD88_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL6280159.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            1755..3392
                     /locus_tag="PXD88_000549"
     CDS             1755..3392
                     /locus_tag="PXD88_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6280160.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            3505..4035
                     /gene="fabA"
                     /locus_tag="PXD88_000550"
     CDS             3505..4035
                     /gene="fabA"
                     /locus_tag="PXD88_000550"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL6280161.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(4103..5029)
                     /gene="rfaD"
                     /locus_tag="PXD88_000551"
     CDS             complement(4103..5029)
                     /gene="rfaD"
                     /locus_tag="PXD88_000551"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL6280162.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(5123..5635)
                     /gene="def"
                     /locus_tag="PXD88_000552"
     CDS             complement(5123..5635)
                     /gene="def"
                     /locus_tag="PXD88_000552"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL6280163.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            5724..6872
                     /gene="dprA"
                     /locus_tag="PXD88_000553"
     CDS             5724..6872
                     /gene="dprA"
                     /locus_tag="PXD88_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL6280164.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            complement(6967..8317)
                     /locus_tag="PXD88_000554"
                     /pseudo
     CDS             complement(6967..8317)
                     /locus_tag="PXD88_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(8330..8599)
                     /locus_tag="PXD88_000555"
     CDS             complement(8330..8599)
                     /locus_tag="PXD88_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6280165.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            8830..9852
                     /locus_tag="PXD88_000556"
     CDS             8830..9852
                     /locus_tag="PXD88_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6280166.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPNKLV
                     IRDSAA"
     gene            9965..10378
                     /gene="secE"
                     /locus_tag="PXD88_000557"
     CDS             9965..10378
                     /gene="secE"
                     /locus_tag="PXD88_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL6280167.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            10380..10943
                     /gene="nusG"
                     /locus_tag="PXD88_000558"
     CDS             10380..10943
                     /gene="nusG"
                     /locus_tag="PXD88_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL6280168.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            11176..11604
                     /gene="rplK"
                     /locus_tag="PXD88_000559"
     CDS             11176..11604
                     /gene="rplK"
                     /locus_tag="PXD88_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL6280169.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            11609..12298
                     /gene="rplA"
                     /locus_tag="PXD88_000560"
     CDS             11609..12298
                     /gene="rplA"
                     /locus_tag="PXD88_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL6280170.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            12360..12779
                     /locus_tag="PXD88_000561"
     CDS             12360..12779
                     /locus_tag="PXD88_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280171.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            12866..14088
                     /locus_tag="PXD88_000562"
                     /pseudo
     CDS             12866..14088
                     /locus_tag="PXD88_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            14081..14485
                     /locus_tag="PXD88_000563"
     CDS             14081..14485
                     /locus_tag="PXD88_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL6280172.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            14585..16018
                     /locus_tag="PXD88_000564"
     CDS             14585..16018
                     /locus_tag="PXD88_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL6280173.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYENEMITVKIASEILDRSKELSRRIL
                     KSLEQKNILTWHGLSPKDPTQYYTLKK"
     gene            16032..16760
                     /gene="fabG"
                     /locus_tag="PXD88_000565"
     CDS             16032..16760
                     /gene="fabG"
                     /locus_tag="PXD88_000565"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL6280174.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            16823..17968
                     /locus_tag="PXD88_000566"
     CDS             16823..17968
                     /locus_tag="PXD88_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL6280175.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            17982..18887
                     /locus_tag="PXD88_000567"
                     /pseudo
     CDS             17982..18887
                     /locus_tag="PXD88_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            18910..20052
                     /locus_tag="PXD88_000568"
     CDS             18910..20052
                     /locus_tag="PXD88_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL6280176.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            20101..20316
                     /locus_tag="PXD88_000569"
     CDS             20101..20316
                     /locus_tag="PXD88_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL6280177.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            20597..21088
                     /gene="rplJ"
                     /locus_tag="PXD88_000570"
     CDS             20597..21088
                     /gene="rplJ"
                     /locus_tag="PXD88_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL6280178.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            21147..21515
                     /gene="rplL"
                     /locus_tag="PXD88_000571"
     CDS             21147..21515
                     /gene="rplL"
                     /locus_tag="PXD88_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL6280179.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(21622..22452)
                     /locus_tag="PXD88_000572"
     CDS             complement(21622..22452)
                     /locus_tag="PXD88_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL6280180.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            22678..24219
                     /locus_tag="PXD88_000573"
     CDS             22678..24219
                     /locus_tag="PXD88_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL6280181.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            24222..25010
                     /locus_tag="PXD88_000574"
     CDS             24222..25010
                     /locus_tag="PXD88_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL6280182.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            25023..26280
                     /locus_tag="PXD88_000575"
                     /pseudo
     CDS             25023..26280
                     /locus_tag="PXD88_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(26359..28368)
                     /locus_tag="PXD88_000576"
     CDS             complement(26359..28368)
                     /locus_tag="PXD88_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6280183.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(28378..29715)
                     /gene="rimO"
                     /locus_tag="PXD88_000577"
     CDS             complement(28378..29715)
                     /gene="rimO"
                     /locus_tag="PXD88_000577"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL6280184.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(29870..30562)
                     /gene="mtnN"
                     /locus_tag="PXD88_000578"
     CDS             complement(29870..30562)
                     /gene="mtnN"
                     /locus_tag="PXD88_000578"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL6280185.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(30620..30811)
                     /locus_tag="PXD88_000579"
     CDS             complement(30620..30811)
                     /locus_tag="PXD88_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL6280186.1"
                     /translation="MTELETKVAFQELIIEELNQALIEQQFAIDKLQTQIRHIAEKLK
                     GAQLSQVASQAEETPPPHY"
BASE COUNT         9127 a         6133 c         6732 g         8845 t
ORIGIN      
        1 gaggatcatc aaaatgaaaa aaacattagt tgcattagca gtattatcag cagctgcagt
       61 agctcaagca gctccacaag ctaacacttt ctacgcaggt gctaaagctg gttgggcatc
      121 attccacgac ggtttaactc aatttgacaa cacatatgat tatggatccg gtattaacct
      181 cggtattaac ctcggtatta accgtaactc tgtaacttac ggtgtattcg gtggttacca
      241 aatcttaaac caaaacaact ttggtttagc gacagaatta ggttatgact actttggtcg
      301 tgttcgtggt aacactacat tttctggtga tgataaagaa aaaactgcgg ctaaacattc
      361 agctcacggt gcgcacttaa gcttaaaacc aagctacgaa gttgttccta acttagatgt
      421 ttacggtaaa gtaggtgttg cattagttcg caacgattac tacgtacaac aacatgtaga
      481 taaagattca cgcattaaag ttcacaactt aaaaccatct ctattattag gtgctggtct
      541 tgagtatgca attactcctg aattagctgc tcgtgttgaa tatcaatact taaatcgtgt
      601 tggtaactta gataaggcag ttcgtacaac agttggttat ctaataccaa gaggtacaaa
      661 tttccaatac agcccagata tccactcagt atctgcaggt ttatcatacc gtttcggtca
      721 aggtgcagca ccagttgaag caccagaagt tgtaactaaa aacttcgcat tcagctctga
      781 tgttttattt gatttcggta aatcaagctt aaaaccagca gcagcaactt ctttagatgc
      841 agcacacgct gaaatcagca acttaggctt agcaaaccta gctatccaag ttaatggtta
      901 cacagaccgc atcggtaaag aagcatctaa cttaaaactt tcacaacgtc gtgctgaaac
      961 agtagctaat tacatcgttt ctaaaggtac taacccagct aatgtaacag ctgtaggtta
     1021 cggtgaagca aacccagtaa ctggtcacac atgtgatgca gttaaaggtc gtaaagcatt
     1081 aatcgcttgc ttagcaccag atcgtcgtgt tgaaatccaa gttcaaggtt caaaagaagt
     1141 aactatgtaa tatagttatt cagttgaaaa attgaatcaa aaaaagcccg cttgttagtg
     1201 ggcttttttc tttttttatt tcagtaaatc ttttaaactt gatttcattt tagcaacttg
     1261 ctctaagtaa agttgtttat tttcgagttc atcggttaat ttgacaatag cttcagaaag
     1321 cgttagtttt tggcttttgg catatttaga gagccttaac cagctcgaat actctaaatc
     1381 aatggatttt ttcttggttg tttgcttttc agcattaaag aagcgtttgc gtttggcgcg
     1441 tactgattga cgcattttct tacgttgctc aggcgtcatt tccgacttaa tccatttttc
     1501 cacttcgtcc ggagagtttt gcaaagtaga gaggaactga acttttaaat cgatcaagct
     1561 ttgttcttcg tacttagtaa tattttctcc ttcacgatgt ttttttagga gatattgcca
     1621 tttccaagtt gtttcttggg tgatgagttt ctgatatcgc ataatctgaa tatgatagga
     1681 aaaagtaagc tatatttagc aagtatagcg gaattttgta taataaacca aattttcaat
     1741 aatgaggcag atttgtgacc ctttctttac ttagtagcca aaaattagta atgcaaaatg
     1801 atttctctcg tttagatgag aaattgaatt ttttagattt tcaacctcaa gcaaaacaag
     1861 cgttaaatca atttttacaa tctcagtttg gtgctttatt agtcttaaaa tctgagcttt
     1921 ttccggaatt tatcaatgaa atcacggaat atctgaaaaa atatagtgta gatctgccga
     1981 ttattagcaa aatggatttc aataaaaata gtctatttgg ttattctgtg tttttggaaa
     2041 gagagctgaa aacagaatat gttaaaggtg caattcacga ggcagataag ggaattttaa
     2101 ttgttaatat ccgttcgctc ttattggata ttacccaatg ggataagcta aaacaggcat
     2161 tattatttgg tgaatatgag ccaaattctg ttaatcactc accctattta tcggctaaag
     2221 agaaatcaac atttaaattg attttagtag gggaaagaga agatatttct actttatctg
     2281 cttatgatga tgggttgtac caatttgggc aatataccga aataaaatcc tacttatcat
     2341 tatcggataa tgtggagcag tggggaggtt atgttcagaa ttatgctgag aatctcatca
     2401 ataagcgatt aacttccaca gcgcttaatc aatttttaca ggcctatata cgtgaaagtg
     2461 aaagccgaga gttggtgtct atttccccta cattattgag aaaacattta ttaggaattc
     2521 aaaattttta cccaaatgtg accgaaattg acgaggtaaa aggttatttt gattatttag
     2581 aacagcaatc atcgatatta aatcaatata cggtgggtga tattctgact aatcaacttt
     2641 atattgaaac cgaaggagag gaaattgggc agatcaatgg cttatcggtc attgagtttg
     2701 aaggcattcc gcatagtttt ggcgagccct tacgcatgag ttgtaatgta caatatggtg
     2761 atggcgaaat tacagatatt gagcgtaaag tggagctagg gggaaatatc cactccaaag
     2821 gtattattat cgctcaatct tgtttagcga atctgttaga actaccaacc cagttaccgt
     2881 tttcagcttc gattgctttt gaacaatcct atggtgaaat tgatggggat agttcttctc
     2941 ttgcgatttt caatgtacta gtgagtgcct tagctaaagt tggcttgcca caatctattg
     3001 cggtgacagg tgctatcgat caatttggga atgtgctaag cgtgggcggg gtaaatcaga
     3061 aaattgaagg cttctttaat atttgtcacg ctcgccaatt aacggggaaa caaggtgtga
     3121 ttattccggc ggcctgtgtt agccatttga gtttaagttc agaagttgtt gaggcagtgg
     3181 agcaaggtct atttaaaatt tggacggtgg aaaatgtgtt tgatgccata gcgattctgt
     3241 ttgagcggga tttttatgat gatgagaaag cccctaactc agcccaaaca gcattattta
     3301 ccttgattca ccagaatcta gatgagcggg aaagtgaaga aacaagcggt tcatttttaa
     3361 gcaaaatttg caaaaagata aagctagact gatccgacaa gtcagcttac aactgttcac
     3421 tgaattaaaa gtctgttact atcagcctga tttatcagtt attgatataa caggcttttt
     3481 tcactttaca ggattttaaa aataatgaac agttgtacac caattatcaa accaagctat
     3541 acttacgaag agcttttgct atcaggaaaa ggagaattat tcggtgaaaa agggcctcaa
     3601 ttgccggctc caccgatgtt aatgatggat cgcatcattg aaatgaacca agaaaaaggc
     3661 aattttgaaa aagggtatat tgaagctgag tttgatatta aaccggattt atggtttttt
     3721 aactgccatt ttattaacga tcctgtaatg ccgggttgct taggcttaga tgcgatgtgg
     3781 caactggttg gtttttatct cggctggatt ggtggcgaag gcaaagggcg tgcattgggc
     3841 gtaggtgaag taaaattcac cggacaaatt ttaccgacag cgaaaaaagt tacttaccgt
     3901 atccatatga aacgtgtggt caatcgtaag ttagtgatgg gggttgctga tggtgaagtc
     3961 gaagtggacg ggcgagtgat ctatactgct actgatttaa aagtaggctt attccaagat
     4021 acgacagcat tctaatcctt ataaccttat aacaaaaaga gctacatttc gtagctcttt
     4081 ctgctttttt aacaacgttt gattagcgat tcaaccacgc catatattcc gctgttcctt
     4141 cagcaacggt tttaaatgtg cctgtgtagc cagcggctct taggttggtt aagtccgctt
     4201 gagtgaacgt ttggtagcgg gattttaaat gatccgggaa tgggatggtt tcaatttcgc
     4261 ctttgccgtg gtatttgata accgcattcg caacttcttg gaaagattcc gcttttccgg
     4321 tgccgaggtt gaaaatgcca gaaatgctgt tttgccacgc ccaaagattc acttttgcca
     4381 catcttccac ataaacaaaa tcacgcaaga actgctctga gccggcaaat agttttggat
     4441 tttccccttt taacatctgg ttgtttaagt ggaatgccac gcttgccatt gaacctttgt
     4501 gttgctcacg aggcccgtat acgttgaaat atttgaaacc acagaccggt gattctgcct
     4561 caggcaaaat acggcggaca tattcatcaa acaggaattt ggagtagcca taagcattta
     4621 atggaccttc aaactcccgt ttctcgataa aattatccga acgtccgcca taggttgccg
     4681 cacttgaggc atagaagaaa ggaatttggc gatctaagca aaaatgcaat aactcttttg
     4741 aatattcgta gttattttgc attaagtatt tgccgtccca ttcggtggtt gccgagcaag
     4801 ccccttgatg gaaaaccgca tcaatctcac caaaatcatc gccggcgata atagaggcga
     4861 tgaaatcctc tttatcgcaa taatccgcaa tatctaagtc cactaagttg ataaattttt
     4921 ccccgttttt gaggttatct actactaaaa tatctttgcg accgatttca tttaaggctt
     4981 taacaatgtt actgccaatc atacctgcgc cgccggtgac gataatcata tttttatcct
     5041 ttctaaagtt gaactgtggt tattatcgtg tcatcacact taatttgcaa atttttaagc
     5101 cattttaacc gcttgtgcct ggttatttcg ctcgtgcaat ttgctttttc aatttttgca
     5161 ttttttcttt gatgcgttgg cgttttaaat tggatatgtg gtcaacaaaa agcacgccgt
     5221 ttaaatggtc gatttcgtgt tgaatacaaa tcgcaaataa atcatcggca tcgatgataa
     5281 tttcttcgcc ttggcggtta agggctttga ctttcacttt ctctttgcgt ggcactaagg
     5341 cacgatgccc gggaatggag agacagccct cttcaatgcc ggtttcaccg ctgctttcta
     5401 aaatttcagg gttaattaac accacttgat tggttttgtc gccctcaata tcaatagtaa
     5461 taacacgctt aagtacgccc acttgcggtg cagctaagcc aataccttcg tgttcgtaca
     5521 ttgtctcaaa catatcatcg ataaaacgat tcagtgcttc gtccacctgt tccaccggtt
     5581 cacaaacggt tgccagtttc tcatcggggt aaagcacaac atctaatatt gccatttttg
     5641 tgatctctct cgaaaagttt aaaaaattcg tttggctatt ttaaaccttt tcttattatt
     5701 agggaaattt tgaggatgaa aatatggcat atcactacga tttattacga ttattacaag
     5761 tgccgcaaat gggggctcaa cgtatagggc gattattggc ggaactcaat tttgctgaat
     5821 tttgccacta tgacaaactt caactcaaac aaataggttg gaatgaaaag caaattcaac
     5881 gttggtttaa tcctgatcaa aagtggattg atcaggcgat gacttggtca gaattgccaa
     5941 atcagcaaat tgtgacactc tttgatgaaa attatccgtt tctcttaaaa caaatttcga
     6001 ctgcgccacc gttaatttat gtaaagggaa atgtggaaag cctttctctg ccacaaattg
     6061 cgattgttgg cagccgagac tattctcatt atggtgaata ttgggctggg caatttgctg
     6121 ccgaattagc tcgccataat attatcatta ccagcggttt agccattggt attgacggtt
     6181 ttgcccatca aaaaatcgtt atggaacaag gcataacgat tgccgtgtta gggagtggat
     6241 taaatcaagt ctatcctgct cgccataaaa aattagccga acaaattgtt gatttaggtg
     6301 gtgcattggt gtcggagttc tcgcctaatc agccgccggt ggcagaaaat tttcctcgtc
     6361 gtaatcgaat tattagtggc ttatcgctcg gcactttagt tattgaagca acgcttaata
     6421 gtggttcact gattaccgct cgttatgccc ttgaacaagg tagggaagtg tttgcgttac
     6481 cgaatgcggt acaaaaccct tacgcacaag gttgccacaa gctaattaaa gaaggggcat
     6541 tgctcgtgga aggtgtggaa gatattttag aggtggtcgc ctcgcaatat caacctcagc
     6601 aaatcccttt gtttgatgag tctaagccaa cagtaagcac atctttacaa gcggtcaaaa
     6661 acagcgaaaa attcgcaaaa aatctgccaa gtctgaccgc ttgccagcag caaatttatc
     6721 agcatatcag cttagagccg atggcaattg atgatttagc caaagttacg gagttgacga
     6781 ttgaaatatt gctggttgaa ttactgggtc tggaattagc cggtgtgatt aaacaagtga
     6841 gtggggggta tgtgatggat aatgggtatt gaacaagagc gttgtcgttt aactaaacaa
     6901 aattccctac catcaagaaa tggcagggaa gattcctcgc aggcagcaaa taacacctga
     6961 ttttaattag gtattcagtt ttgccggttt tttcgccaaa taattatagg ctaccaacag
     7021 agcgaataag ccgacaataa tgagcgtaat gatattcttg tcgaagtatt gagccatata
     7081 gcctaacaca atcccaatac cgccgaagtc tgagtcagag aaagtggtgt tagcaaagcc
     7141 taatgaaccc agtacaggta ataagaatac aggcaagaag gtaattaata tgccgtgaat
     7201 aaaagcaccg ataattgcac cacgacgccc gccggtggcg ttcccaaata cgccggcagt
     7261 tgccccacag aagaagtgtg gcactacgcc cggtaaaatt aacacccaat taagttgccc
     7321 tagaatggct aagcttaaaa tcccacctaa gaaactggca agaaatccaa ctaataccgc
     7381 attgggggcg taagggaaaa caatcgggca gtcgagagcc ggtttggcat caggtactaa
     7441 tttttcggag aagccggtaa atgccgggac gatctcggct aaaattaaac gaaccccttg
     7501 caaaatgaca taaacaccgg ctgcaaaagt gatggcttga atggtggcat acactaaata
     7561 atgttgtccg ccgcttaatg tagaaacgta ttcactgccc gaagcaaggg cgagaatata
     7621 gtaaatcgcc atcatcgtga gtgaaataga aatggagcta tcacgtaaga agccgaggtt
     7681 tttaggtaaa tccatttctt cggtagattt agagcctttt cctaccagtt gcccgattga
     7741 accagcaagc acgtagccca atgtgccgaa atgacctaag gcaacatcat tgctagcggt
     7801 cacttttttc atatagaagt gagcgatagt cgggaaacat aattaaccct aaggttaatg
     7861 ccccgacaaa gacgagctga ataccttcaa agccggcaac ggttaggatt acgccgatca
     7921 tacacgccat atagaaggta tggtgtccgg ttaagaaaat gaattttagg cgggtaaaac
     7981 gtgcaattaa aatattggct accataccga atgccataat taacgcagtc gccgtaccat
     8041 atttttcgat tgccatagac acaatcgctt cgttattagg gataatgcct tgcacgttga
     8101 aggcgtgttc aaacataccg cctaaaggag tcagggagct taaaagtact gttgcaccac
     8161 cgcttaacac taagaagcct aaaatagttt tgattgttcc tttaacaata tcggataccg
     8221 attttttctg tgcaactaaa ccgaccagag caattaaacc cactagaacg gaaggcactt
     8281 tgagaatatc taatataaaa aagagtagcg attccatata acatctccgt tattggttaa
     8341 agtaagcggt caatttttct tcgaattctg ctaatccaac aatgtttttt accacgatga
     8401 gtttttcttt cggcacattg ctgcttgcgg caatatcttt tgccatcaca aataaatcag
     8461 catcatcagc aacaacagag gaaaggtcgg tatgactcac ttccgcttcg acaccgagtt
     8521 ttgccaatac ttttttaatg ttcatttcca tcataaagct gctacctaag ccggaaccac
     8581 atactgccat aattttcata gtaaatctcc attaaaggtg aatgaatagt tgtctgaatt
     8641 ttgaactata gaaatactat agaatagaaa tgttaacgct atcaaacaga aaatattaaa
     8701 aatgtgatag cgttaacatt tttagtattt aattagataa aaaataatca gttggcattt
     8761 tgctctgttc tttctaaata ggaaaattaa ggatttagcc ctataatatg gaacaattag
     8821 gaaaatagta tggcaaatgg aacaagtaga aatcgaagat cttcgggcag agtcacttta
     8881 gctgatgtag ccaaagttgt tggtgttggg cagatgacgg tatctcgtgc tttgcgtaca
     8941 ccagaaatgg tgtcggagcc actacgtaaa cggattgaag aggcaatcat tgaactagga
     9001 tatattccgc atttttctgc tcggcaatta gcttctgcag aatcacataa tttggtcatt
     9061 gtgacgacgt cgattagctc aacggaaaat accttaattt tatcggcatt acgcaaaagc
     9121 gtggcggatt ccgcattgca aatggtgatt ttgatcgctg atcaagaatc ttggtttcaa
     9181 gaactgatta atcatgctcc tcaagcgata gtgtttttga atttagattg ccctcctaat
     9241 gtccgtgagt ggattaaaaa cagcaatatc cctaccgtag aaataggtgc gataaaaaaa
     9301 gaaccgattc atctcagtgt tggaattgat agccacgaag caatggagaa aatgatccat
     9361 tttttggtga aaaaaggcta tcgagagatt ggattgttat cggcgaagca agatttatcc
     9421 atcttcaaac aatatttaga aagttggcat acgactttat ttgcacatca tatttctcct
     9481 ttaaaaatcc accacgtagt agaggatatt tcgttttcgg caggagcaac tttgttgact
     9541 gaagcccttc taaattggga agcaatagat gcattggttt ttttatccga tgaattggct
     9601 tgcggagcat tatatgaagc attacgccga catatgagca ttccaaaaga tcttgcgatt
     9661 gccggtttag gtggtttaga agtggggagt atttcctacc ctaaattgac aaccattgcg
     9721 atcccttacg agcaaatggg aaaaatagca ggtaaacaac tacttactct tttgagtggt
     9781 aaaaccttat cagcagaaga gatgattgtt aaattaccga ataagctagt gattcgtgat
     9841 agcgccgcat aatattgatt ttgcataaaa atctataaaa gatcgtggca agtcttgtag
     9901 aaaatgatag aatttaacgc tttaaaataa tttctgattt ttttattcat tttttaggtt
     9961 atatatggct actgagatta aaacaaaaac ccccgagcaa gtcgaacaaa aaggggggaa
    10021 aagcaaaggt gcaaatacag cattatggct ggttgcgatt gtatttttag cagttgctgc
    10081 ggtaggtaat gcctattttt catctcattt ttcattaatt gttcgagtgc ttttattggt
    10141 ggtgttgcta gttggtgctg ttgcactagc ggcaattaca aatcaggggc aaaaggcaat
    10201 tcattttatt aaagagtctc gaaccgaact acgcaaaatt atctggccga cacgccctga
    10261 agcaacacaa accaccttga ttgtattggc aatgtgcgta gtagtttcct tggttttatg
    10321 gggtattgac tcaatcatcg tcgcattaat tacatttgta acaagtttaa ggttctaaaa
    10381 tgagtgaagt agaagtgaaa gaaaatggct caaaacgctg gtatgtatta caagcgtttt
    10441 caggctttga aaaccgtgtg gcagtaacat tgcgtgaata cattaagctt cacaaaatgg
    10501 aagagcagtt tggtgaagta ttagtgccaa ccgaagaagt cgttgaaaat gtgggcggta
    10561 aacgccgtaa aaccgagcgt aaattcttcc caggttatgt attggttgaa atggaaatga
    10621 atgacgatac ttggcattta gtgaaaagtg tgcctcgtgt aatgggcttt attggtggta
    10681 cggcagatcg ccccgcacca attaccaaac gtgaagcaga ccgcattcta aaccgtgtac
    10741 aagaaacagc ggaaaaacca cgccacagaa aagaattcca accgggcgaa agcattttgg
    10801 ttacagaagg tccgtttgca gatttctccg gtacggtcga agaagtggat tacgaaaaag
    10861 gtcgcttaaa agtatcggtg tcgatttttg gtcgtgcgac accggtagaa ttagaattca
    10921 gtcaagtgga aaagcagagc taatttcaat taatttcaca cacaagcggt tatttttctc
    10981 aattttttgc aaaattcagc ggaaaaaaga ccgcttgtaa caagatttat tcaacaaagc
    11041 gaaagttttg cttgaaaaat agtcgcaaat tctttaaaat ttgcgaccta ttacgagcca
    11101 gcctgctgac tcgtattttt tatgtaacag gggagctgat tttcagcgtt atcacccatt
    11161 tagaggaaaa ttaaaatggc aaaaaaagtc caagcctacg ttaaactgca agttgcagcg
    11221 ggtatggcta acccatcacc accggttggt cctgcattag gtcaacaagg tgttaacatt
    11281 atggaattct gtaaagcatt caacgctcgt actgagagct tagagaaagg tttaccgatt
    11341 ccggttgtta tcacagttta cgctgataaa tctttcacat tcgttaccaa aactccaccg
    11401 gcggcagtgc tactgaaaaa agcggtaggt atcaaatctg gttctggtaa accgaacaaa
    11461 gataaagtgg gtacagtaac tcaagagcaa atccgtcaaa tcgctgaaac taaagcagca
    11521 gatatgactg gtgcgactat cgaaaccaaa atgaaatcaa tcgctggtac agctcgctca
    11581 atgggcttaa tcgtagagga ataatacaat ggctaaattg actaaaaaaa tgaaagcaat
    11641 taaagctggc gtagattcta ctaaagctta tgacatcaac gaagcagttg aagtgttaaa
    11701 aaaattcgca accgctaaat tcgttgagag cgtggacgtt gctgtaaact taggtatcga
    11761 ttctcgtaaa tcagaccaaa acgtgcgtgg tgcaaccgta ttaccacacg gtacaggccg
    11821 taccgctcgt gttgctgtgt ttacacaagg tgcaaacgca gaagcagcaa aagcagcggg
    11881 tgctgactta gtgggtatgg aagatcttgc agagcaaatc aagaaaggcg aaatgaactt
    11941 tgatgttgtt atcgcttctc cagatgcaat gcgtgttgta ggtcaattag gtcaagtatt
    12001 aggtccacgc ggcttaatgc caaacccgaa agtaggtaca gtaacaccaa acgttgcaga
    12061 agcggttaaa aatgcgaaat ctggtcagat ccgctaccgt aacgacaaaa acggtattat
    12121 ccacactact atcggtaaag cagacttctc agctgaacaa ttaaaagata acttaaacgc
    12181 attgttagct gctttaacaa aagcaaaacc aacaacagca aaaggtatct tcatcaagaa
    12241 agtaagcatc tctactacaa tgggtgctgg tgttgcggtt gatcaagcat cactttaatt
    12301 tttaatagaa tcaaaagacc gtagtgttaa tactctacgg tctttttctt taggtacgaa
    12361 tgttaagatt attatctttt tgctttattt ttttgcttag tgcttgtact gtattacctc
    12421 aaattaagca attaccgcca caggttgaat ctgtaaaatc ctttaaagtt gaaaataatg
    12481 gccagcaaag tttgcttcta attcaatttt atgaaaataa atggcgttgg attcaaactg
    12541 atcctttagg tgctcctatt gccagagtat ggcttactaa aaaaggttgg gagccagatg
    12601 gctttgtaat gccaaataag caggcacagc tattatttac agctttagtc aatgcattaa
    12661 accctcattc tccacctttt tatttagata aaggttggaa aattgagagg gaaaaatccc
    12721 aatttacgat ttggctacca gatagcagta aatggaaagt ggaaatattg ggggaataag
    12781 cgaaaacttg aacctctatg cttgaatcac ttgaatatga attttataat tttagtgcca
    12841 ttacacaata atactggaat aaataataat gacactatat ttatcagagc ccgccatcac
    12901 cagtccgatt ggatatggca tcgtggagca tttgaatgtt ttaattaatg cgaaagtatc
    12961 tcctttagat acgacttcac agccttattt acgacataat atttcaaata gttcaccgaa
    13021 atttctaggg caagtctctg ctagattgcg tgattttcct gttgaactat ctattgaaca
    13081 ccgcagccgc aataaccaac tgctatggca cgcccttgca gaaattgagc cgaaaattac
    13141 cgcttgtatc gagcaattcg ggcgtgagcg gattgcggtg atcatcggca cgtccactac
    13201 cggcgccgat gaaaatattc ccgtcttcaa agccggtgtg cagggcgatt atgccaccga
    13261 gcagtttaat caacagcaaa ttctcttctc tgcgccgtct gatttcgttg ccgaagtgta
    13321 tggcttaacg gggctgagtt acggcatttc caccgcctgc acctcagagg caagagcgtt
    13381 aatttctgct gcccgtttac tgaaagccgg cttgtgcgat gcggtgattt gcggtggtgt
    13441 ggataccctt tcgcctttaa ctatcagcgg atttagctcg ctggaagtgt tatcaaacca
    13501 acaaaccaac ccattttccg ctaaccgtaa cggcattaac atcggcgaag gcgcagcggt
    13561 gtttgtgatg agccgtgaac cactggacga acatcgcatt cagttactgg gttatggttc
    13621 cagctcggac gcttaccata tgtcctcacc tcaccccgaa ggggaagggg caatttccgc
    13681 tttccaaaat gccctgcaca atgctgattt agacgcagcc gacatcggct ggatcaacct
    13741 gcacggcaca gggacgcttc ataacgatca aatggaaagc ctcgctgtgg caaaaatctt
    13801 cggtaatcag accgcttgca ccaccaccaa accctacacc gggcataccc ttgggctgcc
    13861 ggtgcggtgg aagcggcaat tttgtgggga atgctctgtc gccaacacaa cccgaccggc
    13921 aagctccctg cgcaattatg ggataaacaa gcggacgaaa acctgccgaa cattgcgatc
    13981 accgatgaac agagccgttg ggcagcaggc agacggattg gcgcaagcag ctcttttgcc
    14041 tttggcggca ataacagcgt actgattttg ggagaaagcg atgcataaat tcaccttccc
    14101 tatcgaacaa attgcaccat tggttcctca cagtggcaat atgatcctac tcgaccgcat
    14161 taccgcattc ggcgaggatt ttttgaccgc tgaaaccaat attcgccctg acaatccgct
    14221 gatcaaacac ggaaaacttg ccacctacgc cagcattgaa attatggcac aagccggcga
    14281 accagttcgc ttaggctacc tgctcggcac tcgcaaactg cacctccacc gccaagaaat
    14341 cccgattggc tcacagctac aaattcagat caaaatgtct attcaagatg ccaccggctt
    14401 cggcgtattc gactgccaac tgatcgattt agccgacaac caagtgcttt tagaaggggc
    14461 gctgaatgtg tttagtccga aatagagttg gtagtagtaa gtagtagtaa gtagtagtaa
    14521 gtagtagtaa gtagtagttg gtagtagttg gtagtagttg gtagtagttg gtaggaaatt
    14581 cgttatgcaa gaggcctatg acattcaaca tctttgtact cgcaaagaag ataaatcctt
    14641 tgatcgcaaa agtgcgagaa aagaaccgaa agagattttg cggcatttga ttggttttgc
    14701 gaatgcagac ggcggtttat tagttattgg tattgaagat aatggcgaaa ttaccggttt
    14761 taactaccaa aaagcccatc agccggaaga atttatccac gctctgcaca atttacaaaa
    14821 aatgccgata ccggtgacct atcagcaaat tgaggtggta aatagtcgag gtttagcgga
    14881 ttttgtctta ttatttgaag ttacagcttc gagtgggagg gtgattacct ctcacgatga
    14941 tcgggttttt ctacgctcaa aagatcaaac tttggaactc aattttgaac aacgtttgca
    15001 attagagtac gaaaaagggc agcgtgcttt tgaagagcaa ccgatagcac gcgctgattt
    15061 tactgatctg gatatggatt tattagaaca gtatcgacag aaattacaca cagatcgctc
    15121 aatagaagag attctgaaag cccgagattt aattaacaaa gaagggcaaa ttacgaatgc
    15181 ctgtattttg ctatttggga ataacccgac acgttatttt cctaatgccc gtttgcgttt
    15241 tttgcggtat gaaggtaaag cacctctgac cggtagaact tttaatgtcg tcaaagaatt
    15301 tatgcttgaa gagcctattc ctaagttatt ggagagtgct aaggcagtat taaaaagcca
    15361 attacgagag ttccaacgtt tagatgaaaa cgggcaattc acaaaaattg atgagtatcc
    15421 agaatttgct tggttagaag gtattgtcaa tgcgattgca caccgtagtt acagtaatca
    15481 aggggactgc attcgcattt cgatgtttga tgaccgtttg gaaattttta gtccgggtgg
    15541 attacctcgc cctgtgacgc ttgaaaatat gtactatacc cgtttttcac gcaatccgaa
    15601 gattgcacga gtgctgtatg aatttggttg ggtcaaagag ctgaatgaag gtgttaatcg
    15661 tatggcggag gaaatgaacg cttaccaact taatacacct tcttactttg aacccaatga
    15721 aaatgcggtc agactgattt tagaaaataa tattgaacat cggacattaa gggcattaga
    15781 acgaatagaa gaaattttta cgcaggatat tatggcgaca ttaaataaaa atgaagttac
    15841 tatcctgcaa tatttatatg aaaatgaaat gattactgta aagattgcta gtgagatatt
    15901 agatcggagt aaagaattat ctcgtagaat attaaaaagt ttagaacaaa aaaatattct
    15961 cacttggcac ggcttaagtc caaaagatcc aacccaatac tacacactca agaaatagta
    16021 ggaaatataa gatgaataat acagttctca tcaccggctc aagccgtggt atcggtaaag
    16081 cgattgcttt aacccttgca caacaagggt ttgatattgt ggtacattgc cgttctcgtg
    16141 tggaagaagc ggaagcggtg gcacaagcgg tcagaaatct cggaaaaaat gccagagtgt
    16201 tacagtttga tgtggcggat cgtgaaaaag tgcggtcgat tttagaggca gatgtggaac
    16261 aacatggtgc ctattacggc gtggtgctaa atgcagggct tacccgtgat aacgcctttc
    16321 ctgctttaac cgatgaggat tgggatagcg tgttgcgtac caatttagac ggtttttata
    16381 atgtcctgca cccgattatg atgccgatga tccgtcgccg taaagcaggc aggattgtct
    16441 gtatcacctc ggtttccggc ttgatcggca accgtgggca ggtcaattac agcgcttcaa
    16501 aagccggcat tattggtgcg gcaaaagcac tcgccatcga gcttgccaaa cgtaaaatca
    16561 cggtaaactg cgtggcgccc ggcttgattg ataccgatat tctggacgaa aacgtcccaa
    16621 tcgaagaaat tctcaaaatg atccccgcag gacgaatggg cgatcctgat gaagtggcac
    16681 acgccgttgc gtttttaatg gatgaaaaag ccacttacat cacacgccaa gtcatcgctg
    16741 tgaatggtgg gttgtgttaa ctttaggata ataattcgta ggggcggatc cagtacccgc
    16801 ccgaagccaa aaagagataa atatgaaacg agtcgtcatc accggaattg gtgtggttac
    16861 cgcttttggt aaagagtggg cggaaattca cggctatcaa ccgccgaaac attggaaccg
    16921 caagcagttg cgcagccttg ggcgagtgtc gcaatttgtg gtggaggcca gcgagcgggc
    16981 tttagcacag gccggtttgt tggacgaaaa cggcgtgatt ttcgactggc taaaagacag
    17041 gcgaatgggc gtggcgtgtg gctcgtccac aggctctacc aatgacatca aagatgccgc
    17101 cgaattgctg atgaccggca aatcggacgg tttcaatgcc aacacctatg tgcgaatgat
    17161 gccccacacc accgctgcca atattggcat tttcttcggg ctgacagggc ggattatccc
    17221 gacttccagc gcttgctcct cgggcagcca aggtatcggt tacgcttacg aagccattaa
    17281 atacggtatg atcccgatga tgcttgccgg cggtggagaa gaattttgtg cctccaaagt
    17341 ctatgtcttc gacagcctct atgctgccag ccgccgcaac gacaacccaa aaggcacgcc
    17401 acgcccctat gacaaagacc gagacggctt agtgatcggc gagggagcgg gaatgttcgt
    17461 attggaagag ctggaacacg cgttagcacg aggggcaaac attatcgccg aagtggtggg
    17521 ctacggtgca aacagtgacg gttcccacgt cacccgccca caagccacca caatgcaacg
    17581 ctgtatggaa cttgccctta aagatgccgg tattcaaccg aaccaagtcg gctatgtaaa
    17641 cggacacggc acggccaccg agcagggcga cattgccgaa actcaagcca ccacagcggt
    17701 gttcggcaaa attccgctca gctcgcaaaa aagctactta gggcatacgc tcggtgcgtg
    17761 tggtgcattg gaaagctggt tcagcattga aatgatgcga gacggctggt tcgccccaac
    17821 actgaattta gaaaatgtcg atgaacgctg tggcgacttg gattaccttc aaggtgacgg
    17881 acgggaaatc cacaccgatt atgtgatgaa caacaatttc gccttcggcg gtgtgaatac
    17941 ctcattgatt tttaaacgtt ggaaataacc gttttcaaat aatgaaaaag atattattag
    18001 tttattactc ccaaaccggg caactcaccc atttggcaga aaattttgta caatcgcttg
    18061 aacaagcggg cgtttttgtg gaaaaactcg caatcaaacc gcaacaggaa tacccgtttc
    18121 cgtggcggtt tatgcgtttt tttaacacct tccccgaaac cgtccacctc acaccgccgc
    18181 cgattgagcc tctgcccttt cagcacgaaa tatacgattt ggtgatcatc gcctattccg
    18241 tgtggtttct ctcccccagc cagccgatta ccgctttttt acagagtgaa caggcaaaaa
    18301 agtgttgaag gatacgcccg tcatcacgct gatcggctgt cgcaatatgt ggctgatggc
    18361 gcaggaaaaa gtgaaaaaac tgcttgccga gagtgaggcg aagctcattg gcaacgtggt
    18421 caaagtggat caatctaacg actgggcgag ttttatcacc acaccgcttt ggatgctgac
    18481 cggcaagaaa aaaaatcggc aagctgccga gcgctggcat tgccgaaagc gaaatggaag
    18541 atgtaaaacg cttcggggca aaacttttgc acatttttag ccaaaaccaa ccgcttgaca
    18601 gcaccctttt ccgccaaatg caagcggtca aaattgacga aaaattgatg atgagcgaaa
    18661 aagtcggtgc gagaagtttc cacctttggg gcaaattact gatcaagtgc ggtcaaattt
    18721 caccgcactt acgccaagcg gtactctatt tttacatcct ctttttagtg acgttaattt
    18781 taaccgtcgt cccgatttca acggtgatta aacggctatt acgcccactg ctgaaagaaa
    18841 aattagaaaa acaaaaacgg tattttgccg agccttcggg cgagtaaacg taccctacac
    18901 ggaaacttta tgctatctaa cgtctatatc accaacacct ccgccttttt acccaacgcc
    18961 cctgtgtcca acgatgcaat ggaagcggtg ttgggaatgg tgggggaaac gccttcccga
    19021 gtgcggaaga tgattttgcg ttctaacggt attcaacatc gttattatgc cattgacccg
    19081 ataacccgcc aagcgactca cagcagtacc gagttggcgg tgcaagcggt caaaaaattg
    19141 ggaaattctg caacatcagc gacttgcttg gcggtgggga catcttaccc cgaccaaatt
    19201 atgccggggc agggggtgat ggtacacggc ttgcttgatg ccgaaccgat ggaagtgctg
    19261 accactgccg gtgtgtgcgt ggcgggaatg gcagcgatga agcacgccta taatgccgta
    19321 cgcatcggtg agcatcgtgc tgcgattgca acggcttccg aaaccgcctc cgccattatg
    19381 cgcagtgaac atttccgtgc cgaaatcgat cataaaaaac tggacgatgc tcgccctgag
    19441 atcggttttg agaaagattt cctgcgttgg atgctctcag acggtgcagg ggcggtattg
    19501 cttgccaatc agccgaacga aaaagggttg agcctcaaaa ttcactggat cgatctggtc
    19561 tcttacgcta acgaaatgcc ggtttgtatg tacgccggtg cggaatttat tgacggcaac
    19621 tacaccggct ggaaagcaat gagcgaagcc caacgtgccg aatgctcggc aatggcggtg
    19681 aaacaagatg tcaaactgct caacgaaaac atcgtcaaat acacggtgga aaaagcattg
    19741 gagcggatta tcccgaaata caagctcaac gctgaagaga ttgactactt cctgccgcac
    19801 tactcgtccg gttccttccg agataaatta ttggaaggtt tacagcggat caatttcctg
    19861 atcccacagg aaaaatggtt caccaacctg actaccaaag gcaacactgg gtcagcctcg
    19921 atctacatta tgctcgatga atttatccgc acccacgatc tcaaacaggg acaaaaaatc
    19981 ctctgctatg tgccggaaag cggacgtttt tcgtcttgtt ttatgctttt ggaagcggtg
    20041 gtaaattcgt aaaatcgtag ggacgggggc tattcccgtc caacaatcat cggaaaacgt
    20101 atggacatca atgacattcc ccaagacaac agcaaaatct tcaacggcga acgcaaagtg
    20161 atctacgccc gcaatccgca accagaaatc cgccaaatga tctcctctat tctcgcttgc
    20221 tacgcttggg acgaaaacaa cccgtttgta gcgaagtctg atgcacggtt gaaggcattg
    20281 gcggaagttg ttggtaaagc agaaattggc gattaagttt gattttgtgc tttacagggt
    20341 cgcagattat ctgtataatt tgcgacctta acttgcgaga gcaagctgat ggtgcttagc
    20401 ctatctaagc cccgtctaag actgtagggg tgaaaactta ataatcctac atagatggtg
    20461 aacagacaga attctctgct tctggacacc ttaggctcaa agaagattgc agtttgtagc
    20521 aatgcaagcg gtaatatttt tgggattttt tgtaaattct gcttgaaaag gcagagtgta
    20581 tcaggagcta aaaccaatgg cattaaatct tcaagacaaa caagcgattg ttgctgaagt
    20641 aaacgaagct gccaaaggtg cactttcagc tgttgttgcg gattctcgcg gtgtaacagt
    20701 tgaaaaaatg actgagttac gtaaagcagc tcgtgaagct ggtgtgacaa tgcaagttgt
    20761 acgtaatact ttattacgtc gtgcagtgga aggcaccgag ttcgagtgct taacagatac
    20821 gtttaccggt ccaactctta tcgcattctc aaatgaacac ccaggtgcag cagcacgttt
    20881 attcactgaa tttgcgaaaa caaacaaaga gtttgaactt aaaggtgcag cctttgaagg
    20941 taaaaaacaa gatgttgcat tcttagcaac cttaccaact tacgaagaag caattgcacg
    21001 tttaatgggc acaatgaaag aagctgcggc aggcaaactt gttcgcactc ttgcagcatt
    21061 acgcgatcaa atggaagcag cagcttaatt ttaagcactc ttctttattc gtttaacaac
    21121 ttattttact ttaggaatcg attgttatgt cattaactaa cgaacaaatc attgaagcga
    21181 ttgcttctaa atcagtatca gaaatcgttg aattaatcac tgcgatggaa gaaaaattcg
    21241 gtgtttcagc agcggcagca gtagcagcag ctccagcagc aggcgcagcg gcagcagaag
    21301 agaaaactga gtttgatgta gtattagcag aagctggtgc aaacaaagtt gctgtaatca
    21361 aagcagtacg tggtgcaaca ggtttaggct taaaagaagc taaagactta gtagaatcag
    21421 ctccagctgc attaaaagaa ggcatctcta aagcagaagc tgaagcactt aagaaagaat
    21481 tagaagaagc tggcgcgaaa gtagaaatca aataattttt gatttatttt gtcagaactt
    21541 caagttcaac aaaccccgat ggaaacatcg gggttttgtt ttttcagaat tgtgtaatgt
    21601 agatatgatt acctttatcc attacttgcg cagcagtgaa aaatgtaaaa attccacaaa
    21661 gtgatctgcc cagtgcattt cgtggtggat ttcatttgcc ataatccgca ggcggatatt
    21721 gtctaacggc acgccaatcc gaatcagtgc ttggtagtaa ttgagcgaac aatcaatata
    21781 ggtttggttc gtattagaga taaagtgcga atcgatttca tcgccttcgt tagtgccaac
    21841 ctgaataaac actttggtat tgggttgtaa cggatattgg tgcgtaaaac gcagaaaatc
    21901 cggctcacta aaccaagagg caagcgaaaa cacccctaaa tgcccgaaaa tatgtgggta
    21961 gcggctgccc atataagcgg tgataatgcc acccattgaa ctgcctgcca ataaggtatg
    22021 ttcttgctga ggcttggtgc gatagtgaat atcaataaag ggtttaaccg tttccaccac
    22081 ccatttggca tattcctccc ctaagcctcc ggcatttcgg gtttcagggg ttgagccggt
    22141 ggttgttttc cacgggccgt attcatttaa gcgattagct cctgcgttat caatgccgac
    22201 aataatcatc ttcggtaatt cttggtgtga tttaatggtt ggaataattt tccaagaatg
    22261 ccccgaataa gactctttgc tgtaaaacac attttgcccg tcgtgcatat ataacaccgg
    22321 ataacgttcc caaccttcgt tgtgataatc cttcggcaat agtacccgaa tgcggcggtg
    22381 atggtgtaaa tagggaacat ataaaaaatg ctcctgcatt tctaaatagt ggttaagtgg
    22441 tttttgtacc atcagtctgt ccttttgctt aaattgtggc gtattttaca ccttaatcag
    22501 tctgagttaa aacaagcggt cagaaaaagt caaaaatttg caaattgctg ttacctaacg
    22561 caatcggttg ccttatgctt ttgaggaata taaaagagaa actgtgatct aagtcacagc
    22621 aatttttatt cggtttgact aaaatccgaa ctatcactta atagagagga aaatgttatg
    22681 caggcttcat tacaagatat tcttgaggta gtaaaagcaa aaaatctcac ttatcagcaa
    22741 aaattgatga gtttaggcaa tattgctgag cggttattta acccgattga actacttggc
    22801 tacactgaag aagagtggga acacattgaa aatcagatga tttgcgattt aaatgaaggt
    22861 tatgcgattt atcgcccacg ttatattttg cctgattata atgtgtatat gcaaaaaggt
    22921 tgccaattct tagatttacc tccgccaacc aatttagatg aagccttaga cggcttgtta
    22981 attctgtatt cacacgttcc gtccattact acttttccgg tgtatatcgg gcgtttagac
    23041 caactgttag aaccgtttat aaccgatgaa gagcaagatt acattaaaat caagcgtttc
    23101 ttaaatcata tcgataaaac catttccgat tctttctgcc acgctaacat cgggccgaat
    23161 gacaccaaag ccggtcgttt aatcttaaaa gcggtgattg agcttgaaaa cattacaccg
    23221 aatatgacga ttcgttatga taaaaccaaa acatcgcgtg aatttgccga actggcggcg
    23281 aaagcgtgct tgttggtgtc caaaccgtct tttgctaatg atgcctacta cattcaagat
    23341 ttaggcgaag aatacggaat tgcaagctgt tataacgcct taccggaatg tggcggtgct
    23401 tacactctga cccgcctgcg tttaggtact atcgggcgtg cttgtgcgag tgttgaacaa
    23461 atggtcaatg agatgctgcc gaaagtggca aaactcgccc tttccacgat ggataaacgg
    23521 cataaattct tggtggaaga aagcaatttc tttgaaagta gcttcttggt tcaggagggc
    23581 tttatcaaac gtactaactt cacaagtatg attgcgattg taggtcttgc tgatgcggtg
    23641 aatcatttac tcaagcaaga aggtttaaat gaaacctttg ggcaaagcaa acgtggcgat
    23701 gaaattgcga cgctgattat ggataagctc caagcagtaa atgacgctca taaagggctg
    23761 tatgttgaac gaaccaataa ccaatatctg ttacacgctc aagtgggggc aaataaccac
    23821 gctgaagaca aaatgaacac gccggcacac cgcattcgtg tgggcgaaga gccaacctta
    23881 ttggcacact taaaacagtc tgctcctttc cataaatatt tcccatccgg tacgggggat
    23941 ttattcgcct ttgaccaaac ctacactgat catttagatg cggtggtgga tattattgac
    24001 ggctcgttcg cccaaggtta tcgctacatt accacttacc tgaaaaatac tgatttgatt
    24061 cgagtgacag gctacttggt gaaaaaaagc gaggttgaac gttatcgcaa aggcgaagcg
    24121 gtattgcgtg ataccacttg gtatggttca ggcaccgatg attgtgcgaa agtgttcgac
    24181 cgccagctgc gtgatgaaga aaatgtgaat gcagggtaac aatggctgca ctttctgaga
    24241 tttttgtgcc gttacaccgc attatcccct tctcgaatgt agaagggcag ggcaatcgta
    24301 ccagcatttt tctacaaggt tgcaagctga attgcctgta ttgccataac ccggaaacca
    24361 ttccacgtta tagcaaggaa gcaaaacagg ttagcttgca atacttgtac gatcaagtga
    24421 tggaggcagt tccctttatt cgaggagtca ctatttcggg tggagagcca accattcatc
    24481 ataaaaaatt agtgccactg ttcgaggcgt tgcgtgagca agggctaacc tgttatttag
    24541 acagcagcgg cttttttgat tttgaggcaa cagagccgtt aattaatgtt accgataaat
    24601 ttctgttcga tctcaaagga gatggggcgg gcttacaaac gctatgcttt gatcggaaaa
    24661 accaagccgg caaagtgcct gaacaggctc ttccaaacgt gaatcatatt aaacctgaaa
    24721 acttggctcg caatttgcaa aatttagcca aattattacc gcttgataag gtggaagaag
    24781 tacgtttggt ttacctcaat gagttttata acgcccacca tttgctcgaa aaagtggctg
    24841 acctacttaa accttaccca gatgtactac ttaaaattat tcgggtacac accaaaggag
    24901 cgagagatga aacaggcttg gctcgttttg tacccactat cgagcaaacc gatgaactgg
    24961 cagcatttgc aaaacggcac ggtattcaaa aagttattac tatttactaa tggagactta
    25021 cgatggatat actaattagc ataattggtg tttttgtgtt attaggctta ggtgttttat
    25081 tatcaaataa tcgcaaagcc attaaatttc gcacaatttt gggcgctttg gcgattcaaa
    25141 ttggttttgc cgctcttatt ctttactttc cagcgggaag aaatgcattg ctagctactg
    25201 caaattgtgt gagcaatatt attaattatg gtaacgaagg tattagcttt gtgtttggca
    25261 atttagcgaa tccgagtaat agcagcattg gttttgtgtt tgcggttaaa gtattgccta
    25321 ttattatctt cttctctgcg ttaatttcaa tgctttacta ccttggtgtg atgcaatggg
    25381 tgattaaaat tattggtgga gcattacaaa aaacactagg cacttccaag gcagaatcaa
    25441 tgtcagcggc agctaattat ttttgttggt cagacagaag ctcctctagt tgtaaaacca
    25501 tacattagcc gtatgacaga gtcagaatta tttgccatta tggttggtgg aactgcttca
    25561 attgctggtt ccgttatggc tggttatgcc ggaatgggcg ttcctttaac ttatcttatt
    25621 gcggcctcct ttatggctgc accagctggg ttactatttg ctaaattaat gtatcctcaa
    25681 acggaaacct tggagagtaa agcagatgac aatgttgaag ttgaaaagcc aaataacgtg
    25741 gttgaggccc tagctaatgg tgctagtgca ggtgttactt tggctattaa tgtcggtgct
    25801 atgttaatag catttattgc agtgatcgct ttattaaatg gctttattgg tggcattggt
    25861 aattggtttg gttatgaggg gctaacctta caaattttat taggttattt attccaacca
    25921 cttgctttct taatcggtgt gccgtggcaa gatgccgata ttgcaggtca aatgataggt
    25981 atgaaacttg ctgttaatga atttgtcgga tatcttgagt ttgctaaata tctacagcct
    26041 gatgctgtgg tgcaattaag cgataaaact aaggcaataa ttacttttgc tttatgtggt
    26101 tttgcaaact ttagagcaat tgcggtattg attagtggta tcggaagtat ggcaccaagt
    26161 cggcgttcag atattgctcg tttaggttta aaagcagtga ttggcggcac attggcgaac
    26221 ttaatgagtg caactatagc gggtttcttt attggtttaa gtggtgccac attaggttga
    26281 tacaagcggt taaattgact cacttttttg caaaaagccc aagtaagtta aatgactact
    26341 tgggctttgt ttaatgaact agctcttagt ttcggttttt gctgtgttat ccttttccgc
    26401 tttggctgtc tgtgttttcg aagttgtctg tttttttgcg gattggctag cagtagctgc
    26461 ttttcttact ttctttgttt taacttctac ttccgcattt ttagagtttt tatccgctaa
    26521 ccatgcctgc actttagcta agaatatttg tcccatcggg cgaggatcgc cagaaaataa
    26581 tgtttgtaat ttattatttt caataatgtc gcgtctaatt gctaagcgtt cttcgtggtt
    26641 ttccgctaaa cgaatagctt gagtaacgta ttcctctgct gtttgggtaa ttaaccaatt
    26701 aggtagcccg aggcgcttaa ataaaccttc atcaatatgt tcatgaactt cagggcctgt
    26761 tttacagaca ccaactaaac caagcgtaac catatcgata atgccgtttg tatttccaaa
    26821 tgggaatgga tttagcatca tatcgcaatt atgtagaata tttagatatt catcatatgg
    26881 cgaatgtggg tgtgcggttg catcatttcc taaatagctt ttgataaaac gttccacata
    26941 aggatgcgta attccactag attgccctaa tgcaaaatgg aaatgagttt ttaccttcgc
    27001 cctatcacga atggctttta atgcctctaa gaaatatggg tttaatttca tagtggttga
    27061 tgcaattccg atatggataa cctctggatt ttcacgtagg ttatagacca cattttgagg
    27121 cgctaatgcg gaaggcacat agggtagcgc atcttttgga agacgtaata attgttcact
    27181 aaagcagctt tcggaaccaa catagtcatc ttctacgatg acatattcaa taaaatcaga
    27241 gtgtgtagtt gccggatgac ctagcgcaac agcttgaatt ggtgctaggc gagtgttact
    27301 agcgaaaata gtggttaaat ccattccaat gctaggcata tagaatacgg ctggattatt
    27361 tttatcacag atatctttta aaaagcttaa gcggtcaaat agtgagccat cttgtggtaa
    27421 taaatgaaat tcgtcgaata cctgttgccc catttcatct acagcatcac tgcctagccc
    27481 aataagatgg aaatgttcgc gtgcagcaac cattgaggtt gaatgagtac gataaataga
    27541 atgtgatgaa tggaaatgct ccaataatac taccatgaca ggtttattat ttctggtacc
    27601 aagctgttca atttttctat cttcccaacc gacagaaagt aaatgacgac gaattacagc
    27661 atttaacgac cgttttacat tatgtttatt tgcttcaata tcataactgc aatgcatata
    27721 aacatcgtgt gaaatggcgc tcggtagctt gttcaagttt tcaatttgcg ctaatttttc
    27781 tgggaaccat tgcaaaatag ccgcgcgttt tgcaaaagca gaggatgtac caataaatct
    27841 aggtgattgg agtgcaaaac aaagtgatgc ggtgagatct gatgaagcat tccatgcagc
    27901 atctagattc aataaaatat tagattccgg taagtataaa atacagaact taattagtgc
    27961 ttgtaatgtg gcatctaaat caaccgtatt tggattagca gattctttat ttctattgta
    28021 agtacgcaag atatggtctg cgtttacgta tggagaactg gcaaaaatta atgctatcca
    28081 gcgttgtaat gtcagaaaac gcatagcacc gtgttcggag atctctaatg caggatcttc
    28141 aaacaagcga gtaatcgcta ccgccattcg agtacagaaa tagatagctt tatcattttc
    28201 taaattttca atctgctctg gcatattcaa ttcaatattg gaaatgccac caaaattact
    28261 atctaatttt gaaaggatag acagtagctc ggtacaagcc gattcataat cttttttcgc
    28321 gaccgcctgc tcaaaacgga tgacgctagg catattttct gctgacataa tgtatcctta
    28381 gttgtttaaa attccccaca gatcatactc atctgcatgt gtaatggtta ctgaaataat
    28441 ttgccctact gtcactaatt ggtttgaagg attatctaca tagactacac cgtcaatttc
    28501 cggtgcatct gccattgagc gaccgataat gccttcttcg tcaatgtcat caataattac
    28561 ttgtacggtt ttgccgattt ttgcttgtaa gcgagcagcg gaaatttctt gttgtagttg
    28621 cataaaacgg tggaaacgtt cctcttttac ttcttccgga acttgatccg gcatatcggt
    28681 agcaacagca ccttccactg ggctgaattt aaagcaacca acacgatcta attgtgcttc
    28741 ttttaagaaa tcgagtaata gttggaaatc ttcttctgtt tcccctggga agccgacaat
    28801 aaaggtagaa cgcagagtta attcagggca aatttcacgc cattttttaa tgcgttctaa
    28861 ggttctttcg attgaacccg ggcgtttcat cgcttttaag attttcgggc tggcgtgttg
    28921 gagtggaata tccaaatacg gcaaaatttt gccggcagcc ataagcggaa ttaaatcatc
    28981 tacgtgtggg tatgggtaaa catagtgcaa acgcacccac acgcccattg agcctaattg
    29041 ctcacatagc gtaattaaat tacttttaat cggcataccg ttccagaaaa cggttttggt
    29101 tgcttcttct tttttgcgat ctaacgaata ggctgaggtg tcttgtgaga cgattaacag
    29161 ctcttttacc ccggcatcaa ctaggcgttt tgcttcatct aatacttgca cgatagaacg
    29221 gcttgctaaa tcgccacgca ttgaaggaat aatgcagaaa gtgcagcgat gatcgcagcc
    29281 ttcggaaatt ttcaaataag cgtaatgctt cggtgttaat ttaatccctt gttttggcac
    29341 taagctggtg taagggttaa attccggttt tggcacatat ttatggacgt ggttcattac
    29401 cgcctcatag ctatgtggcc ctgtaatttc caatacttta gggtgtacct cacgaatttg
    29461 gttttctttt gcccctaaac agccggtgac aattactttt ccgttagctt ctaacgcttc
    29521 accaatgctt tcaagagatt cttgtactgc ggaatcaata aaaccgcagg tgtttacaat
    29581 cacaagatcc gcattttcat aactagggat gatgttataa ccatccgcac gcagttcggt
    29641 caaaatacgt tcggaatcaa ctaaattttt agggcagcct aagctgataa aaccaatatt
    29701 tggtgaagca ctcatataac tctcaataac taaaaagaaa aatgcctaca atttttgtct
    29761 gtaggcaaaa aactaacaag attctacaaa atcttgccca aaatagcgat aacaagcggt
    29821 caatttttaa taaacattta caaacttgaa atttcgctaa caattaaaat taatcgatat
    29881 tatttagcat tgctaataca atcgtggaag atttttctgc ggctaatggc agaaattctt
    29941 caaaagaaag gtgggattct ttgtccgcta catccgatac tgctcttacg attacaaatg
    30001 gaaggttaaa accgtgacaa acctgcgcaa tggctgctgc ttccatttcg actgcaacga
    30061 cattcgggaa attctgacga atttgattaa tcttatcatt accgttaata aaggcatcgc
    30121 cgctacagat taagcctgaa accacattgt aaccggcttt tttcgcttcc ttttgagcta
    30181 attcgactaa ttgctcgttt ggcgaaaatg ttggcgggtt tgccggtagt tgcccgattt
    30241 cataaccaaa ggcggtcaca tcaacatcgt gataacgaac ttcggttgaa atcaaaatat
    30301 cacctacgtt taaatctgga tctaatccac cggcagagcc tgtattaata atcatatccg
    30361 gctgggtgag ctgtatcagt aaggtagtgc cgatggcggc agcaactttg ccgatacccg
    30421 attgtaataa tgccacacgg gtattgttaa ttttgccttc aaaaatttta caacctgcta
    30481 attcagtgac tttaggttca accattactt ggcgtaaaat ctcaatttct tgtgccatcg
    30541 caccaataat accaattttc attactttcc ttctctaatg tattgtttat tttttgaaaa
    30601 aaacgctatt ttaacagcat taatagtgag gagggggtgt ttcttctgct tgtgaagcaa
    30661 cttggcttag ttgagcccct ttcaatttct cagcaatatg gcgaatctga gtttgtaact
    30721 tatcaattgc aaattgttgc tcaataagtg cttgatttaa ctcttcaata atcagctctt
    30781 ggaaagcaac tttagtctcc aattcggtaa tttttgccga taatgtataa ttattat
//
LOCUS       DANLXK010000015        29815 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.015, whole genome shotgun sequence.
ACCESSION   DANLXK010000015 DANLXK010000000
VERSION     DANLXK010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29815
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            12..1070
                     /locus_tag="PXD88_000580"
     CDS             12..1070
                     /locus_tag="PXD88_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280187.1"
                     /translation="MAEILFRSCLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NARAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGSA
                     FYIIFPYIFTNLLDKPELVSVSFFVNNLIAVLLQSDFSRKLNLTVHKLIYIAPILIIL
                     QIMPWFYALQWLSTITAFLYLVIFATITVYANTALSNMLVKLDNGKNQGLMFGSSKLI
                     LAITTLGVMNVLPYIFLI"
     gene            complement(1067..2200)
                     /locus_tag="PXD88_000581"
     CDS             complement(1067..2200)
                     /locus_tag="PXD88_000581"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL6280188.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(2392..3231)
                     /gene="queF"
                     /locus_tag="PXD88_000582"
     CDS             complement(2392..3231)
                     /gene="queF"
                     /locus_tag="PXD88_000582"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL6280189.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            complement(3236..3784)
                     /gene="gmhB"
                     /locus_tag="PXD88_000583"
     CDS             complement(3236..3784)
                     /gene="gmhB"
                     /locus_tag="PXD88_000583"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL6280190.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            complement(3784..4251)
                     /gene="bcp"
                     /locus_tag="PXD88_000584"
     CDS             complement(3784..4251)
                     /gene="bcp"
                     /locus_tag="PXD88_000584"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL6280191.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGGEQVFDKFKTGEHHQMIVDYLRGR"
     gene            complement(4338..4535)
                     /locus_tag="PXD88_000585"
     CDS             complement(4338..4535)
                     /locus_tag="PXD88_000585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280192.1"
                     /translation="MKFGYLNGVLEGKGKMRFDEAKLHAESEFEKYRIVQDRLFESDF
                     DKVLKEMLRSENQYRPSFSTT"
     gene            complement(4504..4986)
                     /locus_tag="PXD88_000586"
     CDS             complement(4504..4986)
                     /locus_tag="PXD88_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6280193.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            complement(5129..6286)
                     /gene="hemW"
                     /locus_tag="PXD88_000587"
     CDS             complement(5129..6286)
                     /gene="hemW"
                     /locus_tag="PXD88_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL6280194.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            6508..8091
                     /locus_tag="PXD88_000588"
     CDS             6508..8091
                     /locus_tag="PXD88_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6280195.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            8303..9256
                     /locus_tag="PXD88_000589"
     CDS             8303..9256
                     /locus_tag="PXD88_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6280196.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            9258..11228
                     /locus_tag="PXD88_000590"
     CDS             9258..11228
                     /locus_tag="PXD88_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL6280197.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            11243..12049
                     /locus_tag="PXD88_000591"
     CDS             11243..12049
                     /locus_tag="PXD88_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280198.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            12112..13698
                     /locus_tag="PXD88_000592"
     CDS             12112..13698
                     /locus_tag="PXD88_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL6280199.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            13744..15126
                     /gene="nhaC"
                     /locus_tag="PXD88_000593"
     CDS             13744..15126
                     /gene="nhaC"
                     /locus_tag="PXD88_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL6280200.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(15169..16365)
                     /gene="ispC"
                     /locus_tag="PXD88_000594"
     CDS             complement(15169..16365)
                     /gene="ispC"
                     /locus_tag="PXD88_000594"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL6280201.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(16484..18682)
                     /gene="relA"
                     /locus_tag="PXD88_000595"
     CDS             complement(16484..18682)
                     /gene="relA"
                     /locus_tag="PXD88_000595"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL6280202.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            18936..20243
                     /locus_tag="PXD88_000596"
     CDS             18936..20243
                     /locus_tag="PXD88_000596"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL6280203.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            20428..21963
                     /gene="der"
                     /locus_tag="PXD88_000597"
     CDS             20428..21963
                     /gene="der"
                     /locus_tag="PXD88_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL6280204.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPFAGKKNKLTPSQLRKRKRLMKFIKK
                     SKK"
     gene            22059..23486
                     /gene="hldE"
                     /locus_tag="PXD88_000598"
     CDS             22059..23486
                     /gene="hldE"
                     /locus_tag="PXD88_000598"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL6280205.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
     gene            23500..24054
                     /gene="pyrR"
                     /locus_tag="PXD88_000599"
     CDS             23500..24054
                     /gene="pyrR"
                     /locus_tag="PXD88_000599"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL6280206.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            24127..25077
                     /locus_tag="PXD88_000600"
     CDS             24127..25077
                     /locus_tag="PXD88_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL6280207.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            25139..26005
                     /gene="rsmA"
                     /locus_tag="PXD88_000601"
     CDS             25139..26005
                     /gene="rsmA"
                     /locus_tag="PXD88_000601"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL6280208.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(26116..26745)
                     /gene="upp"
                     /locus_tag="PXD88_000602"
     CDS             complement(26116..26745)
                     /gene="upp"
                     /locus_tag="PXD88_000602"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL6280209.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(26770..28455)
                     /gene="fadD"
                     /locus_tag="PXD88_000603"
     CDS             complement(26770..28455)
                     /gene="fadD"
                     /locus_tag="PXD88_000603"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL6280210.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            complement(28433..28897)
                     /locus_tag="PXD88_000604"
     CDS             complement(28433..28897)
                     /locus_tag="PXD88_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL6280211.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            complement(28894..>29815)
                     /locus_tag="PXD88_000605"
     CDS             complement(28894..>29815)
                     /locus_tag="PXD88_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL6280212.1"
                     /translation="AWAESTIKTPLAYLTAMSEAHKKSTYELVYILQQGSDTESFRLR
                     HAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDY
                     ANLKGYAFLDAGKDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNL
                     VLEEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQ
                     QQTVTGATYQVESEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTIN
                     DRDIVIIGDVPLQSAKQIMNNIGFKEGAQP"
BASE COUNT         8605 a         6421 c         5924 g         8865 t
ORIGIN      
        1 aatatcattt tatggcggaa attcttttcc ggtcttgctt atgctgcaat gcaaagcgta
       61 ttttttatct acttacattc tacaaaggct ttgaaaccag ccaaattgca actgcatttt
      121 ctttgttggt ctttaccagc caagcatttt ccctttttgc aggttcttgg ggtgatagtt
      181 ttggacgtta ccctatcatg atgcttggct gtttgctcga tgccctagct tacattttat
      241 tactgacaac aaaaaattac cctctgctat tacttgctac ctttttcttc gggctcggta
      301 gcaccttatt tagtaccaat gcgagagcat tcttattagc caatattcaa gataccggag
      361 atagttacca actcaaaact aaggctcaag gtaaatttct gaaggtatca agcctgtcag
      421 cgatggtagc accattactt actattccat ttattttcta ccgtaaagca gaatggctta
      481 tttggattag ctgctgcatt gaaattatta tgctattcgt tatgtttaaa accgcaccca
      541 aaacacatga atgtgcaaat gggcaatgcg aacgctttaa atttggtgca ttaaaaggaa
      601 tactaaatga acaatttatt tttgtacatt tattactttt tattccgctt ggtctaggaa
      661 gtgcatttta tattatattc ccctatatat tcaccaatct tctggataaa ccagaattag
      721 tctctgtctc attctttgtg aataatttaa ttgcagtgtt attgcaatct gatttttcac
      781 gaaaattaaa tctgacagta cataaactta tttatattgc accaatactg attatacttc
      841 aaataatgcc ttggttttat gcactccaat ggctttcaac catcactgca tttctctatt
      901 tagtgatttt tgccactatt accgtgtatg cgaatacggc actatctaat atgctagtga
      961 aattagacaa tggtaaaaac caaggcttaa tgtttggaag ctctaaatta attttagcta
     1021 ttaccactct cggagtaatg aatgtattac cttacatttt cttaatctaa gcagggtaaa
     1081 tcacgcccaa actcacggct ttttttgctc ctgtcacgct aggcatatta ctgggtaaat
     1141 tatggattcg ctggtaagct aaccaagcaa aagcggcagc ctctacataa tcaatatcta
     1201 aaccaaattc tgtagtggtt gtaacctccc actcgggaag taaagcagaa atccgttcca
     1261 ttaataacgg atttcttgac ccaccaccac aaactaaaag caagcgaggc agagagcttt
     1321 caaagcgtaa taactcattg gcaatacttt gagcagtaaa ttctgccagc gtgcgttgca
     1381 catcttgtgg ctgacaagcg gtcaaatttt ccaatttttt tgcaagccac gttaaattaa
     1441 acagctcccg cccagtgctt ttaggcgggg ctttagcaaa aaacgactcg tctaataacg
     1501 tcgctaacag ttcagtattg agcttgcccg ttctcgccca ttcgccgttt ttatcgtatc
     1561 ttttgccttg atgttgttcg atccaactat ccatcaaagt atttccggct cctacatcat
     1621 aaccaactgt aggggaattg ggatttaaca ccgaaatatt gctgatgccg ccaatattca
     1681 gcaccactgt tagacgattt ggatcgctaa aaatagcttg atgaaatgcc ggcacaagcg
     1741 gagccccttg cccacctact gccatatctt tacgccgaaa atcagcgata gtggtaatac
     1801 cggtttgctc tgccaccaaa ttcatatcgc caatttgggt ggtgaaggga tactcagaat
     1861 ccggtgaatg ccacaccgtc tgcccgtgac aacctatggc ttgaatatct tctgctttta
     1921 gctgattttt cgctaaaaac gcattgatcg tttctgcata aagcaagcct aaacggtgat
     1981 caatttcccc cagtttttgg agattggttt cgccggtttt aagtaacgca gaaatatccg
     2041 cccgtaattc ctccggcatt ggaaaaaaat cacaagcggt cattttcggt ggattttttg
     2101 caaaatccag caaagcaata tccaccccat caaggctcgt gccggacatt acgcctatat
     2161 agtaatttgg gctatattca ttcatcataa aaatcaacat ctgctatttg ttacttttct
     2221 ttgctttgcc aaagaaaagt aaccaaaaga aaggcaaccc gagcttcacc gctatcctcg
     2281 cttagtttga attggcttaa cggcaaattt acattcgctc cgctcagagt aaatttacct
     2341 accaattcaa acacgctcag gcggttcaga cgggaacaaa aaacaacaaa atcattggcg
     2401 tgccattctt agattttccg gcacttcctc aaaattcgat ctaaacggat tgatgtctag
     2461 cccgcctcgt ctggtgtagc gtgcgtaaac tgttaatttt tccggctcgg caaattgcat
     2521 taaatcacag aaaatgcgtt ccacacattg ttcgtggaac tcattatgct cacggaacga
     2581 cactaaataa cgtaacagtt tttcacggtt tagctttttg cctttgtagc gaatttgcac
     2641 acttccccag tcaggctgtg acgtaattaa gcagttagat ttgagcaaat ggctgactaa
     2701 ggtttcttcc accaactcat cttctgcaat gttctctaaa taatgagtcg aaaacgcata
     2761 actgtcgatt tgaatatctt gctcatcaat gcaatcgcct gcaaaatcaa ctatcggctg
     2821 ttgcgtgtag tgtgataatt ggtaaatttt taccgaaacc tgaccgcttg cacagcgagc
     2881 cagatccgct tgaatcgttt tcccaacttc ttctattgag ctaaatttgg tttggttaaa
     2941 actgttcaaa tagagcttga aacttttcga ttcaattaag ttttcgctct taaaatcaat
     3001 ggcgacatct gcaatcgcta cttgcggtag cccattttgg ttcaaccaag atagctcata
     3061 gcaagtccac acatcagccc ctcggttaaa aggctgctct tgtgtaatgc ctaaactatc
     3121 acggtttaat ttacgaggaa caggttgcaa aagcgaggca tcatattcgc ttttgtactc
     3181 ggttttttgc cctaatttca gggcggaaag ggatttatcg ttataattca ttgctttatt
     3241 taatatattt tactaaatca actaaactat ctaacaccaa atcggcttta gcctgaccct
     3301 cttccgtcac tgctttgtca gtgcgaacca gcactttggt tttcacgccg gcggcttctg
     3361 cggcaaggat atcttctaat ttatcgccca ccatataaga ttggcttggg tcgatgttta
     3421 aatcttgaat cgcttgagta aacatacctg ctttaggctt acggcaatca caatctttac
     3481 ggtattcgcc tttgccttcg gggtgatgtg ggcagtagta aataccgtct agtaccacgc
     3541 cataatcttc atcgagcgac cagtccatcc attcggttag ttgcataaat tgtgcttcgc
     3601 taaaatagcc tcgggcaatg ccagattgat tggttaccag caccaataaa taacctttgt
     3661 cttgtagctg ttttaacgcc ttgccgacac cgtcaataaa ttgaaaatca tcaatttgat
     3721 gcacatagcc gtgatcgata ttaattgtgc cgtcacggtc taaaaaaatg gctttttttc
     3781 ccattagcga ccccgtagat aatccacgat catttggtga tgttcgccgg ttttaaattt
     3841 atcaaacact tgctcacccc ccccctgctc atcaattaaa aaactgatgc gatgaatgcc
     3901 gtcataggtt tttcccataa atttcttttc gccccataca ccaaaggctt ctgcaacttg
     3961 gtgatccggg tcagataata aggtaaaatt aagtgctttt ttctctacaa attgagctaa
     4021 ttttttcggt aaatcggtgc taattccgag aacaaccaca ttgagctcat caagttctga
     4081 tttgctgtca cgcagtccgc acgcttgcgt agtgcaaccg ggtgtaagag ctttcggata
     4141 aaaataaacc agtacttttt tgccggcaaa ttgagagaga gaaaccggct cgtcagcctg
     4201 attctgaagg gtaaatttag gggctttatc gcctgcttgt aagatattca tttgtaattt
     4261 ttccataaaa aataaccgct tgcattatac acggcaagcg gtcaaacttg gcaaaaaatt
     4321 tgcaaaatgc ggttgtttta tgttgttgaa aatgatggac ggtattgatt ttccgaacgc
     4381 aacatttctt tcaatacctt gtcaaaatcg ctttcaaata atctgtcttg aacaatgcgg
     4441 tatttctcaa attcgctttc tgcgtgcaat ttcgcttcat caaaacgcat tttgcctttg
     4501 ccctcaagaa cgccgttcag ataaccaaat ttcacgaatt tctgccagca actgctcaaa
     4561 ataatcttca tttaaaaatg taccattttc cattctttgg cggtcaatca catagccttt
     4621 ttgggcgaaa ttccgtaata ctttagttgc ccattggcga aattgtgtcg cccgcaccga
     4681 gtttacccta tagcctatcg aaataacggc atcaaagttg tagtgtttgg tacgataatt
     4741 tttgacatct gcggcagtta ccgagaaatc ctcggtaact gaatttggat cgagttccct
     4801 actattaaaa atgtttttta aatgcaaaga aacattatct gttgagcaat caaaaagctg
     4861 agcaattaat ttttgcgtaa gccaaatttc gttatcttca tagcgaacgg taatattttc
     4921 tgccccattt tgttgagtaa aaatcaaaaa ttcggcggta ctattacgga tttgtttatc
     4981 gatcataagc tctccttatt gtgaaggcta tgctactaaa cactgttttt ttgtctagta
     5041 aaaaatgagg atttttcgac gcagatcaca aaaaacgcct gtaatttagc attacaatgc
     5101 ggtctttttt tagtcgtttt tttgcaaatt attccaaaaa tccttccagt aattcattta
     5161 aaaacaattt accgtgttgg gtaatttgcc aatgggttgc ggtttcggaa atatagtttt
     5221 ggtttaacgc ccaatcgatt gtcgggcgaa caacttccct gtctaaccct gtaaaccatt
     5281 caaattcttg ttttggtgtc gcttcaagta atctaaagcg gttcataaaa aactcaaacg
     5341 ggcggtcgtc taattcaatc aaatcttggc tgtagcgata ttcacctcgc atataacctt
     5401 tcgggtgttt gattttgcta aagcgataaa tttccccggt cggatatgaa attttgccgt
     5461 gagcgccaca accaatcgcc aaataatccc caaatcgcca ataatttaaa ttgtgtctgc
     5521 attggtagcc ttttttggca taagccgagg tttcatactg ctcatagccg gcattcgtta
     5581 aaagttgatg cccttgctcg aaaatatccc ataactcgtc atcatcaggc aaggttggct
     5641 tacgataata gaacatcgta ttcggctcaa tcgtgagctg ataccacgat aaatgcggtg
     5701 gattgagtga aatccctgtt tctaaatccg ccaaggcttg tttaaccgat tggtttggta
     5761 agccgtgcat taaatcaatg ttgaaacttt gcaagcccga ttttgcagaa ttttgggcaa
     5821 atttaatcgc ttgttttgct tcatttgcat cgtgaatccg tcctaatttc aataattttt
     5881 ccggctcaaa actttggatt cccattgaaa tgcgggttac gccaccttgt gcgtaaccta
     5941 aaaatcgctc tgcctctgcg gttcccgggt tcgcttccag tgtaatttcg atatttggct
     6001 cgaatgcaat ccgtttttct acttcaatta ataaataagc tatcccttcc gctgaaaata
     6061 agctcggggt gccgccgcca ataaaaatag aatataattt acgatcacct attgccactc
     6121 ggtaagcggt caaatcttgg gataaatctg caagtaaatg ttcgatatat tcttgctcgg
     6181 gaattaatcc tttttgagcg tgcgagttaa aatcgcaata agggcatttt tgcacgcacc
     6241 aagggatatg gatataaagg cttaaaggcg gtaaaatcag gttcactgtc aatttttcat
     6301 ttatgattaa attggcgaat aataacgaaa agcacgtgaa gtgaaaagca aagattttcg
     6361 tgagctagat cacaaattca ataattcttg ctttaccact ttgacattaa tgatatgata
     6421 aattcaattc aaaaaagtgc attttttgat aaattcactt cagcaaataa taccgcccct
     6481 atcataaaaa cttaaaggag ctttaagatg aaaaaacagt ttgaacacaa cgaatcccgc
     6541 cgtggtttta tgaaactaat tgcaggtgtc ggtgccggta tggcatttag tggcacttta
     6601 ggtacattta cacctaaagc atttgcagcc cctgccgccg gctcaacgat tgaggccggt
     6661 atagcttatc ccatatcaac cggatttgac ccgcttacct caagcggtgc atcctcaatg
     6721 gcggcaaacc tccatatttt tgaaggcctc gtggacttac atccagccac tcgcaaacca
     6781 tatttagcat tggcagcagc agagcctgaa aaaattgatg atgtaaccta tcgaattact
     6841 ttacgtgacg gggctaaatt ccacaatggt aatccggtta ccactgaaga cgtagtttac
     6901 tcatttgaac gtgtattaga cccagctaaa gcatcacttt tcgcacaatt cattccattt
     6961 attgacactg tgaaaaaagt tgatgacaaa gtggttgaat tcaaattgaa atatccattt
     7021 gcgttattca aagagcgcct aaccattgtt aaaatcgtac caaaagcagt ggtagaagcc
     7081 ggtcaagctg catttgatgc taatccagtg gggactggcc catataaatt tgtatccgca
     7141 actaaagatg atcgtattgt tttcgaagca tttgcagatt ataacggtgg ctacccggca
     7201 caagtcgaga aaatgacttg gttcttactt tctgatgatg ccgctcgtgt aaccgctcaa
     7261 gaatctggcc gtgttcaagc aattgagtct gtgccttact tagatgcaga acgcttaaaa
     7321 cgtaaaggta ccgttgagtc agtacaatca ttcggcttac tgttcttaat gtttaactgt
     7381 gaaaaagcac cgtttaacaa cccgaaagtt cgccaagcgt tacattatgg cttagatacc
     7441 caaaaattaa ttgatgtggt gttcttaggc aatgcaaaag ctgctacatc ttacgtgcaa
     7501 gatactcacc cggattatgt gaaagcaaat tcgcaatatg atttcgataa agcgaaagcc
     7561 gaagcgttat tagcagaagc gggtgtgaca gagttaaaat ttgaattgtt ggcaaccgat
     7621 cactcttggg tgaaagaatg tgcgccatta attcttgaat cgtggaacag cttaaaaggc
     7681 gtgaaagttt cactcaaaca cttacaatca ggtgcattat atggcacaca cgttgataaa
     7741 ggtgcatacg aagttgtgat tgcacctggc gacccatcag ttttcggtaa tgacttagac
     7801 ctattattaa gctggtggta tcgtggtgat gtatggccga aacgtcgttt ccgctggtct
     7861 gaaacagctg aatatgcaga agtacaaaaa ctgcttgatg aagcggccaa aaatcctgct
     7921 gcttctaaag aagcctgggc gaaagcaatc aatattatcg ctgaacaagt gcctctttac
     7981 ccaattattc accgtaaatt gccaactgcg tggaatgata aggcattaac aggtttccaa
     8041 ccattaccaa caacaggtat gtcatttatc ggtgttggtc gtgctaaata gtcgtaacgg
     8101 ctagctaaat gcaagcggta atattttaca aaaaatttac cgcttgcata aataaaaatc
     8161 aaaatgatgt aatattcgtc ttatatcact cagaattctt accatttcta tattttcatt
     8221 tataatccta catatcacta tattagcttg taggtaaact tagatttaat tttggagtgt
     8281 aactacactc aaggagaaga aaatggaaat tatactccga ttattatggc gtcgcctaat
     8341 ggctctgccg gtaatgatct taggcgtaac tgccttggta tttattgttt tacaattcac
     8401 ccccggagat ccggcaaccg ttgctctcgg tgaaagcgcc agcgaagccg ctaaagaaat
     8461 ctatcgtgaa caacatgggt taaatgatcc attgcttgta caatattttc gctttttagg
     8521 gaatttattc gtattagatt tcggtatgac aacccctcca gaacagccta ttgttgatat
     8581 gattgctaaa gcattccctt taacattaca gcttaccttt attggggtct tcttagctgc
     8641 tatcgtctct ttcacattag gtgtaacggc agcactttac cgtgatactt ggattgatca
     8701 attaatccgt ttaatctcgg ttgccgctgt tgccacacct tctttctggt tgggtatttt
     8761 attgattcaa tacttctcct taaaattaga ttggttgcct tcaggcggtt ttattccatt
     8821 tagcgaagat ccaaaaggct atgtaaactc aatggttctc ccttcactcg ctttagctgt
     8881 tcctgtatgt gcctcattga tccgtgtcgt gcgtacaaca atggtagaag aaatggataa
     8941 agattatgtt cgaacagcca tcggtaatgg tgtaccttac tcaacggtga ttcgccacaa
     9001 cgtgcttcgt aatgccttaa ttactccggt aacagtatta ggtttacggg ttggttattt
     9061 attaggtggt gcagttgtga ttgaacagat cttcgactta ccgggaatgg gtaaattaat
     9121 tttcaacggt atcgtcaatc acgacttgaa cttagtgcaa ggtgtagtat taactatcgc
     9181 atttactttc gtgttggtga atatcattgt tgatattctt tacttgctca ttaatccaaa
     9241 aattcggagt ttataatatg tttcgccaag gattagctgc tcgacttgct tcaggcggtg
     9301 caagatttag agcattatca accagctcaa aaatcgcctt actctttatt gtatttatcg
     9361 cattagtcgc tatttttgca ccattagtag cgccttatga cccactgcaa acgctacgtc
     9421 cagtgcaagc tccaagcggt gattatttat tcggtacaga ccgtttagga cgtgatattt
     9481 tctcgcgtat ggtatgggga gcaagaacat ctctctttat cggtttaggt gcggtaggcg
     9541 ttgcgattct attcggtagt attttagggg caactgcggc aaccgccgat aaattcggta
     9601 acgaagtgat tatgcgtttt atggatatct taatggcatt cccgggtatc gcattagctg
     9661 ctgtattact tgccactttc ggtaactctg tacctgtgat tatcgtgact attgcggttg
     9721 tttacactcc ccaacttgcc cgagtggtgc gtgctaacgt agtatctcaa tgggaagaag
     9781 attatgtgcg tgccgagcgt gtaattggtg gtagccgtac ttatattcta ttaaaacacg
     9841 ttgtgcgtaa tactgctgca ccggttttag tattcgcaac agtgatggtt gctgatgcca
     9901 tcgtatttga agcatcactt tcattcttag gtgcaggtgt ccagcctcca ttcccatctt
     9961 ggggaaatat cttatctgaa ggtcgtaacc ttgtattaag tggcttctgg tgggctacaa
    10021 ctttcgcagg gattatgatt ttattaaccg tacttgcgtt aaatatcctt gctgaaggct
    10081 taaccgatgc gttagtaaat ccaaaactaa aacgttcaac tcaaagtaaa gaagatgtcg
    10141 caaaaccatt ggcaacagac gttcaagaag caatgtctga aactcttgcg ttaaaacgtt
    10201 acttactcaa attacacgag aaagaaacga cccgtactga ccgtatgcaa ttaaactcaa
    10261 cggccaaacc gattttacaa gtgaaaaact tatcaatccg tttcccaaat cgttatggtg
    10321 aaactccgct tgttgataat atcagcttta ctgttcacga aggcgaaacc atgggcttag
    10381 tgggtgaatc tggttgtggt aaatcaatca ccgcattctc aattatgggt ttattaccaa
    10441 aaactgcaaa aatcactggt gaaatcctct ttaccgaccg ttcaggtaaa caacacaatc
    10501 ttttagaatc agccgattta aatgcccttc gtggtcacga aatctcgatg atttaccaag
    10561 atgcattaag tgcgttaaac ccatcaatgc gtattaaaga ccaaatggca caattaatca
    10621 gccgtggtgg taaacaatca gcagaaacat tattgcaatg ggtaaaactt gacccggaaa
    10681 aaacgctcaa ccgttatcct cacgagttat ctggaggaca acgtcagcgt gtattaattg
    10741 caatggcact tgctcgtgaa ccgaaactat tgattgctga tgaaccaaca acagcattag
    10801 acgtaaccgt tcaagctgaa gtgatcaaat tattaaacga attacgtgag aaacttggat
    10861 ttgcaatggt attcgtgagc cacgacttag ctttagtggc acaaatcgct caccacatca
    10921 cggtaatgta tgctggtcaa gtggttgaaa ctgcaccaac tacgccatta ttggcaaacc
    10981 caacacacga atacacacgt ggattattag gctcggtact ttctaccgaa ttgcgtgcag
    11041 aacgcctata ccaaattccg ggcagtgtgc cttcaccatt tgattttgcg aaaggtgacc
    11101 gttttgcgag tcgttcatta agaccagatg caaaccctga acagcacttg aaattagtgc
    11161 caaccggtga tcacccacaa cacttctggg cttcacactt agaagatcca caatctaaag
    11221 aagcataaag gagagcaata cgatgagtat gaaatttatc aaagaacagc caattattga
    11281 actgtctaat attgttgtgc aatttgcttc tcgtgacggc accttattta acccgaaaaa
    11341 attcacggcg gtaaatgatg tcagcctagc aattcacgcc ggtgaaacag tcggtctggt
    11401 tggacaatct ggttgtggca aatctacttt agccagtgtg atgatcgggc ttcaaaaacc
    11461 aacctccggc acagtaaaat ttaacggctt agagatgaaa tatggcagtg cggaagctcg
    11521 caaatatttc ggtagccaag tgtcagtaat tttccaagac ccggcaaccg ccctaaatcc
    11581 gcgtatgcgt gtgttggata ttttaaaaga tccgatggat attcataata tcttacaacc
    11641 gcaagaacgt gagaagcggg tttatgattt gctctctcga gtcggtctac ctcgttcagc
    11701 ggcgttggtc gagccaaccc gattatctgg tgggcaaaag caacgtgtag cgattgctcg
    11761 tgcattggca ttaaatccga agctgattgt ggctgatgaa ccaacctctg cacttgacgt
    11821 atcggttcga gctcaagtac tgaacctgct ggcagacttg aaaaaagaac tcaatttagc
    11881 gatggtattt atctctcacg acttacaaac cgttcaccaa gtttcagacc gcattgtggt
    11941 tatgaacggc ggtaaaattg tggaaatggg cgatgcttca gacgtatttg aacgcccaac
    12001 gcaagagtac acccgaacct taattgaagc agcaccatct ttattataat tgtgctttgt
    12061 gcctacaagc ggtaaaattt ttcgcaaatt ttaccgcttg tgtttttatt tatgatccaa
    12121 attacccaaa ccattaacat tgatttatta attgtcggct ctggcatcgc tgggctttct
    12181 gctgcagttg aggcaaaaga aaaaggcatt aataccttac tgattagcaa atctacgatt
    12241 ggctcgggag cgagctactt tccgcttaag gcaacacttg gcattcaagt aaccggcgat
    12301 gaagccgata aaattcactt taaagaagat attgaaaaca tcggcaaagg caaaatcaac
    12361 cctaatgtgg tacaagccta tatcgaagat tcaccacaag cgattgaact actccaccgt
    12421 atcggctttc agccttggaa gcgtaacgac aaccgtccgg cttgttttgc caaataccct
    12481 cgcccaattt atttaattaa agattggcgg gaatctgccc tacgagcgaa acagattttg
    12541 caagagcaac acattgcttt ctatgaaaat gctacccttt tacacatcgt cacagacaat
    12601 aaccaagtgc aaggtgcggt attttcgctc actacaagcg gtcaaatttc ctatattttt
    12661 tgcaaaacca agcatcttat tttagccgca ggcgggattg ctgggctgta taaagataat
    12721 ctctacccgg ctgatgttat cggttcactt cattatgtgg cacaacaagc cggggcaacc
    12781 ttggttaatc ttgcctttat tcagttcatt cctgcctttg tcgagccaaa atacaaggtg
    12841 ctatttggcg aacatacatt gaaatatgtc acccaaatca ccgattctaa gggtaacaat
    12901 ctatttccac acttaaatgc cgagcaattt gcaaaaatgg tgctggaacg tagccattat
    12961 gctcctttca gccttgattt tgccggcgtg gagttcgatt tagtgatgat gaaacatttg
    13021 cttgaaaacc ctcacgaaaa aggcatttac cttaaataca gccccaaact gtatgaagac
    13081 acggaagagt tttataccgt ctatttgaat tggctcaaaa atgaagtcgg gattgattta
    13141 gtgcaagata agattgcaat caagccgttt gctcatagct gtaacggcgg cattcaaatt
    13201 aatcaatggg gcgaaagtgc agtaaaaggg ctatttgcga ttggtgagat ttctcactgc
    13261 attgaagggg caaaccgtat gggtggtaac tcagtcggcg gtggcttagt gtttgccaaa
    13321 cgtgcggtat cggaaattgt tcgttcgcta gaacagaatg atttgcaaaa aaacagcgaa
    13381 atctcaccgc ttgcaatggc agaaaaagca ttaaatcagc ttgctaattc aactgctaat
    13441 ctagaactaa ctgccagtga agtgctttct actattcgag agaaaatggc gttatacgcc
    13501 aatgtgtacc gcactcggag caacctcaaa ctactacttg aggaattaaa ccgtttggaa
    13561 caagaatttg acccaatcta tcacgctcaa tatcaaggca ttgaaattta caatgcgtta
    13621 aaaaccgctc aattagtggt caatcaaatg ctaaatgagc agagtttagg cgcgcactac
    13681 ttagatgaac aaaattagtc tataatagcc aacttattta aaaataataa attaggagta
    13741 taaatgaata actacctact taaattaaaa ccaatgacag cggtcatact ttcgcttttg
    13801 acggtcttta tcttaggttt tacaatgatt gggcttggct gggtgcctca aatttcaatt
    13861 ctagccgtga ttgtaatgct gctacttttc ggcttaatca ataaaattcc gtttaaaaat
    13921 atgcaagagg gtatggcaag cgggctgatg tccagtattg gtgcggttta cctattcttt
    13981 tttattggat tattggtttc agctttgatg atgtctggtg cgattccaac cttaatgtat
    14041 tatggcttaa gtgtgatttc acctgaatta ttttacattt ctgcattcgc attaagttct
    14101 gtagtaggta ttgcgttagg cagtagttta accacaaccg ccaccatcgg tgttgctttt
    14161 atcggtatgg cttctgcttt cggtgcgaac cctgcgattg tagcaggtgc ggtggtttca
    14221 ggggcgtttt ttggcgataa aacctctcca ctttcagaca ctactaccat tgctgcttcc
    14281 gtagtgggca ttgatatgtt cgctcatatc cgtaatatgc tttataccac catccctgcg
    14341 tggattttaa cagcattatt cctttggttt ttaaccgaac ctactgatgc acaaaattta
    14401 gcaaatatag agaacctaaa aaccaatttg caagaaacag gattaataca cggctactct
    14461 ttgctacctt ttgttacgtt aattttaatg gcaattaagc gtgttaattc aatttatatt
    14521 attgtaacta cagtaacact ctcgctaatt attacctata tccacagttc gccaaccctt
    14581 gaacagctag ggaattattt ctttaccagc tataaacctg ttgaaggcgt agatttaggc
    14641 gaagtggcat cattagtctc tcgtggtggc attaatagta tgttctttac catcactatt
    14701 gtattgcttg cgttaagttt aggtggtctt ttacaaatcc tcggcatttt accggcacta
    14761 cttaacggca ttagcggctt tttaaccagc acaggacgtg ttactcttgt agttgccagc
    14821 actgcggtgg gaattaacgt cttaatcggt gagcaatatt tgagcttatt gttatcaggt
    14881 aatactttcc gctcaactta tgaacgttta ggcttagaag tgaaaaactt atctcgcacc
    14941 attgaagatg caggcacggt aatcaaccca ttagtccctt ggggcgtgtg cggtgtgttt
    15001 atcagtagcg tattaaatgt accggtgtta gattatctac catacgcatt cttctgttat
    15061 atctgtttaa tccttacctt aatttttgga tttaccgggg taacaatcag taaaaaagct
    15121 aactaatatg tgaaaaatgc ctacaaattt gtaggcattt tcttttcatt agagctgaag
    15181 aacagcttgt ttggctaact ctctggcgag tttatcaata tgcaatacat cagcaatttc
    15241 actgacttga attggagcaa tattttccac caccgttcta ttcacgttca caatatccgt
    15301 aaagcggatt tgctcgttta aaaacgcctc aacggcaatt tcattggcgg cattcatcgc
    15361 tgttgtcgca tactgtcctt ctgcaaaagc ctcaatcgct aattttaagt tcgggtaacg
    15421 ggcaaaatcc ggctcgataa aggttagctc ttttaattta aagaaatcta atggtggcac
    15481 accagcatta attcggtttg gatatgccat cgtgtgagca atcggcgtac acatatccgg
    15541 gttgcccatt tgagcaatca ccgagccatc aatataacgc accatcgaat gaataattga
    15601 ttgtgggtga atgatgatat ccatttcctc ggctgttgca ttaaacaacc agcgggcttc
    15661 aatatactcc aagcctttgt tcatcattgt ggctgaatcg actgaaattt tcttacccat
    15721 agaccaattg gggtgagcaa ctgcttgagc cggtgtaatc gcatcaaatt catttaatgg
    15781 cttagtacgg aacggtccac ccgatcctgt taaaataatt ttactgacac ccagttcagc
    15841 gagtggacaa aacccgactt tttgctgtgc ctccggtgga agcgattgga aaatcgcatt
    15901 gtgttcacta tctaccggta agagcttcgc accggattta cgagcctcat caataaaaat
    15961 ttgcccacag gttaccagcg attctttatt tgccaacaat acggttttac ccgctttcac
    16021 cgcagaaagt gtcggtaata accctgctgc tcctacaata gcagccatta ccatatccac
    16081 ttcggaatgt gcagcaagct cacaaatagc tgcttgaccg gctaacactt cagttttaga
    16141 ccccaaagtt gccaatgccg tttttaatgc ttgtgcggat ttttcatcat ccattgccgc
    16201 aaaagtcggc tgatattgac gacattgctc cagcattaat tcaacattct ttccaccaac
    16261 taacgcaaac acctcatatt ggtttgggtt tgggttatgc tcaactaccg ataaagtgct
    16321 tttaccgata gaacctgttg aacctaaaat cactaatttt ttcattttgt ttctctttat
    16381 ctaatgactg ataagggcga aagatttttc gcccctacgc cgtaattatg cggatactca
    16441 ttcgttgttt gtaaattgtt tagcaaaaac aaccgcttgt agattaactc gaaagccgtt
    16501 ttgcttcgat aacatcatct aattgagcga tacgagccaa taatttattc aaaatttcaa
    16561 cgttgttaag ctgaatttcc atatcaatgg tggcaaggct acgtttcaca tcggttcggc
    16621 tggaaacgcc taacacgttt actttttcat ttgccataat tgcactgaca tctcgcagta
    16681 agccgttgcg gtcattggca atcactcgaa tggttaagct taaaccagag gtatagcctt
    16741 cgccccaatc cgcctccaca actcgttctg ggttgagact ttgtaattca aacagttgct
    16801 cacaatctgc acggtgaatc gaaatccctc tgccttgtgt gatgtaaccc acgatttcat
    16861 cacccggaat cggctggcag caacgggcaa tggaatgcat taagttccct acgccctcta
    16921 caatcacata gcctttgctt ggcttcggct gattggtgtt tttattcacc tgtttaagta
    16981 ccgcttcgtc ttcttgttcg gcggtcggtt taattaattt tgattgcaag aagtgcatta
    17041 actgatgaag acgaatatcg ccaccgccaa taccggcata gagatcatca aactgtttta
    17101 agttatagcg aggcagagca tattcttcaa tttgcttgag cgtaaaaccg aatttttcca
    17161 tttcggcttc aagggcctct ttgccgattg gaatattttt ctctcggtct aattttttaa
    17221 accacgcaat aatttttgag cgagctttgc ctgtattcac aaaaccggta ttcggattga
    17281 gccaatctcg gcttgggttc ggctcttttt gggtgataat ttcaacctga tcgcccattt
    17341 gcagatgata agtaaacggc acaatccgcc ctgccacttt tgctccaatg caacgatgcc
    17401 cgatttcact atgaattgca taagcaaaat caagtggtgt agctttttgc ggtaaatcga
    17461 tcacctcgcc tcttggggta aagacataaa cacgatcatc aaaaatttgc gaacgcattt
    17521 ctgccaccat atcgcctgaa tcggcaagat cgttttgcca ctcaagcaat ttgcgtagcc
    17581 acacgatttt ttcttcgtag cccgaacgcc ctgcggttgc cccctcttta tatttccagt
    17641 gagcggctac gcctagctcc gcatcatcgt gcatttgctg ggtacgaatt tgcacttcaa
    17701 tcgttttttc accttcgcct aatacaactg tatgaataga ctgataaccg ttaggttttg
    17761 ggttagcaat ataatcatcg aaatgttccg gcaaatgggt atatttggtg tgaataatgc
    17821 ctaatgccgt gtagcaatct tctaacgttg gcactattac ccgcacagcc cgaatatcga
    17881 aaagctgatt aaatctcaac cgttttttct gcattttctt ccaaatgctg tagatatgtt
    17941 tcgggcgtcc ataaatctgc acattcttga tttcaggact taaacaagcg gtcagatctg
    18001 ctacaaaatt tgcaatataa cgctcacgat ccacacggcg ttcgcccaat tcaaatttag
    18061 caatttgagt gtaagagaca gggtgtaaaa tgcggaaaca gtaatcttcc agctcccatt
    18121 tgagctgccc gatacccaat cgattggcaa gcggtgcata aacgtgagaa cattctttag
    18181 cggcgagaac ggtatcttct tcggaatggt ggttactatc acgcaggtag gcaattcgtt
    18241 cggcaagttt aatcaccaca cagcggaaat cgtccaccat cgccaacaac atgcgacgga
    18301 tattgtcgat ttgcagatcc gacacattat tggcactaag ctggcggata ttctccattt
    18361 cgagtacgcc tttaactaag tttttgatgt cgttactgaa atcttctttt aattgcacca
    18421 agtcgatcac attgtgtttt accagaggaa aaagcattgc ggcaactaag ctgtcatcgt
    18481 ccatattcaa gccgtgcaat acttcaacca tctcaatgcc ataccacatc agactatagt
    18541 cggtatccag tttttcctgt gcataactcc acgcattgtg aatctgctca aaagtcacag
    18601 gagacatatt caggcttgca caccaactcg acaactcaaa attattcggt tcaagttgat
    18661 gggaataacg aattgctacc ataaggcctc cttgtaaatt tttgtggaaa ttagaccgct
    18721 tgtacagctt aaaatggagt tttattatac gtggaaattc agaaaaaatt tacccctaat
    18781 cgaaaattta atccaagtta tcttatcctc tttactcctt aagaggtagc aaccttgtga
    18841 taaatcaaac ctatcaacac aatcatttgc acgacttcac gctcttgatt aaaatacttg
    18901 cgtttttatt ttgatcttta tttttgtggg tagcaatgac aattttagct ttaggaatca
    18961 accataaaac cgcctctgtg ggtttaagag agaaagtggc gtttgtagat gacaaacgta
    19021 aactggctct tgaacaaatc caaacgagcg gattggctga aagcgtggtc attctctcta
    19081 cctgcaaccg caccgagctc tacttccacc agcctaatat ttctccccgt gaagagagcg
    19141 aggaaaatat ccaatggcgt gaacaatgtt tccgctggtt tgcccaaatt catcaacttg
    19201 atgaaagcga gttgcgtgaa tgtttatatt ttaaacaaaa tttagaagcc gctaaccact
    19261 taatgaaagt ggcaagcgga ttagattcac taattttagg cgaaccacaa attttagggc
    19321 aggttaaaca agcctatcaa tatagcgaag atttctacca acatcagcaa aaagcgatgt
    19381 ccaccaagct atcacgcttg ttccaacgca cctttgccac cgcaaaacga gtacgttccg
    19441 aaaccgaaat cggcagccaa gcggtgtcag ttgcttatgc agcttgcggt ttagcccgtc
    19501 aaattttcga taattttggc aagttacgct ttttgctggt aggggcaggc gaaaccattg
    19561 aattagtcgc ccgctattta attcaacacg gggcgaaaaa tataatgttg gcaaaccgca
    19621 cccatattcg ggcggaaatg ttggcggaaa aactaaacgc tccaatgcaa attctgtcgt
    19681 taagtgcttt gcaactcggt ttaaaccaag ctgatgtagt tattagctcc accggtagcc
    19741 ctgataccct aatcagtaaa gaaatggtgg aaattgcgca aaaacaacgc caatttgacc
    19801 cacttttgct gattgatatt gccgttcctc gtgatattga cgaaaaagcc ggcgacttag
    19861 agggcgttta cgcttatagt gttgatgatt tacaaaatat tatccaacgc aatatggctc
    19921 agcgtgaaga agccgccaaa caagccgctg aaatcgtcaa agaggaaagc aaagcatttt
    19981 ttgaatggtt aaaacaacag cagtctagtg atttaatcaa acgctatcgt caagatgcgg
    20041 agcaaacccg ccaagaattg ttggagaaag ccctacaagc aatcagtcaa gggcaagaca
    20101 gccaaaaagt attaagtgag ctaagctaca aactcaccaa ccagttacta cacgccccaa
    20161 cccaagcgtt acaagcaatg gcaaaaagtg gcaactccac cggcttacaa agtttttcaa
    20221 gagcattacg gctagaagaa tgatgctcag cacattcttt taggcatatt tgcaaaaaat
    20281 tgaacatttt taaccgcttg cggacgcacg ccgtgcgtcc ctccccgtgt tcccgatctt
    20341 cttctaattt caacttcccc aaatttccgc tataataagc caatttttgc aactattttg
    20401 caaataaccg gatatagagg atacaaaatg actcctgttg ttgccctagt gggcagacct
    20461 aatgtcggca aatcgacttt atttaaccgt ttaacccgta ctcgagatgc cttagtagca
    20521 gatttccccg gcttaacccg agaccgtaaa tatggtcacg ctaatattgc cggctacgat
    20581 ttcattgtaa tcgacaccgg tggtattgat ggtacagagg aaggcgtgga agaaaaaatg
    20641 gcggaacaat ctttattggc gattgaagaa gccgatgtgg tgcttttctt ggttgatgcc
    20701 cgagccggat tattacctgc cgatgtcggc attgctcaat atttacgcca acgtgaaaaa
    20761 accacggtgg tggttgccaa taaaaccgat ggtattgatg ccgactctca ctgtgccgaa
    20821 ttctatcaat taggcttagg cgaagtagaa caaattgctg cagcacaagg gcgtggggtt
    20881 acgcagctta tcgagcaagt gttagctcct ttaggcgaac agctaaatgc cgagcaattt
    20941 aaccaagaac aagcgggcga aaatgctaaa aatgttgcaa atgaagaaac agacgaatgg
    21001 gataccgaat tcgactttga gaacgaagaa gatgcggcat tattagatga agccttggca
    21061 gaagaagcag aagagtcgat tgaagataaa aatatcaaaa ttgcgattgt cggtcgtccg
    21121 aatgttggta aatcaacact gaccaaccgc attttaggcg aagagcgtgt ggtagtttat
    21181 gatatgccag gaacaacccg tgattctatt tatattccaa tggagcgtga cggtcagcaa
    21241 tataccatca ttgataccgc cggtgtgcgt aaacgtggca aagtgaattt agcggttgag
    21301 aaattctcgg taattaaaac cttgcaagcc attcaagatg caaacgtggt gctattaact
    21361 attgaggccc gagaaggtat ttccgatcag gatttatcac tactcggctt tattctaaat
    21421 gctggtcgtt cattggtgat tgtggtaaac aaatgggacg gcttgtcgca agatattaaa
    21481 gatcaagtga aatcagagtt agatcgccgt ttagatttta ttgattttgc cagagtgcat
    21541 tttatctcgg cattgcacgg ctcaggcgtg gggaatttgt ttgattcagt aaaagaagcc
    21601 tacgcttgtg caacgcaaaa aacctcgacc tcaatgctga ctcgcatttt gcgtatggct
    21661 gctgatgaac accaaccacc attggttaat ggtcgccgag tgaaattaaa atatgctcac
    21721 ccgggtggct acaacccacc aattattgtg attcacggca atcaggttga aaaattagcg
    21781 gattcttaca aacgttattt aagtaattat ttccgtaaaa gtttaaaaat tatcggctcg
    21841 ccaattcgga ttttattcca agaaggcaat aatccttttg ccggtaagaa aaacaaactg
    21901 acaccaagcc aattacgcaa acgtaaacgt ttgatgaagt ttattaagaa aagtaagaaa
    21961 taatatctaa cgatagcgca agcatccacg cttgtgctaa aactaataat ggcacaagcg
    22021 tggacgcttg cgccatcatt taacagagaa tattaactat gatgatgcaa tactctccaa
    22081 aatttaataa tgctaaagtg ctggtgcttg gcgatgtaat gttagaccgt tactggttcg
    22141 gggcaaccaa tcgaatttcg cctgaagccc ctgtgccggt ggtgaaagta caagatattg
    22201 aagagcgtgc cggcggtgcg gcaaacgtgg cgatgaacat cgccagcctt ggcgtaccgg
    22261 taacattaca cggcttaatt ggcgatgatg atgccgggcg tgctttagat aaattactta
    22321 attcccacca gatccaaaat cattgtgtgg tgattaattc gcacccaacc atcacaaaat
    22381 tgcggattct ttcccgccat cagcaattat tgcggttgga ttttgaagag ggttttcaca
    22441 atgtagattc taccgcccta cttgcaaaac tttcgcaaga aattaccgct tacggagcat
    22501 taattctctc ggattacggc aaaggcacat tggaatcggt gcaacaaatg atccaaattg
    22561 cccgcaatgc taaggtgccg gtgctgatcg acccgaaagg cacagacttt gaacgctatc
    22621 gtggggcaac attgcttaca ccaaatatgt cggaatttga agcggtggtt gggcattgta
    22681 aagatgagga tgagattgtc agcaaagggt taaaactgat tgccgactat gatttatctg
    22741 cactattagt tacccgttcg gaaaaaggaa tgaccttact tcgcccgaac cacgagcctt
    22801 atcatctgcc gacccaagcc aaagaggttt atgatgtaac cggtgcaggc gataccgtaa
    22861 tcagtgtatt agccactgcg attgccgatg gcagagccta tgaagaagcc tgctatttag
    22921 ccaatgctgc cgccggtgta gtcgtaggta aattagggac ttcaaccgtc agcccggttg
    22981 agctggaaaa tgcgattcac caacgcactg ccaccggttt tggcgtggtt tctgaagccg
    23041 aattaaaagc gattgtggaa gaagcgaaaa aacgtggcga aaaaatcgtg atgacgaacg
    23101 gttgctttga tattcttcac cccggtcacg tttcctattt ggaaaacgcc cgtaaattag
    23161 gcgaccgatt aattgtagcc gtcaataccg atgcttcggt aaaacgccta aaaggcgaag
    23221 ctcgcccgat taatgattta gctgcccgta tggcagtttt agctggttta gcctctgtag
    23281 attgggttgt gccttttgat gaagatacac cacaacgttt aatcagtgaa atcctacctg
    23341 atttattggt aaaaggtggt gattacaagc cggaagagat tgccggcagc caagaagtat
    23401 gggcaaacgg cggcgatgtg cgagtattga actttgaaaa cggctgttct accactaatg
    23461 tgatcaagaa aattcaagca ctataatggt aataagcgaa tggcgagaga aaaaatcatt
    23521 attgataccg agcaatttca gcgcacaata tctcgtattt cacatcaaat tattgaaaaa
    23581 cacggtgatt tgcaagatgt agtgattgtc ggcatcaaac gtcgaggagc tgaaattgcc
    23641 gagttaatcc aaaaacgcat tgaagattta gctcaaacac gcttgcctta tatggcgtta
    23701 gatattacgt tctaccgtga tgacctagac ttaatttatc aagatcccgt atttatggga
    23761 gccgataatc agctaaatct gaacggtaaa aaagtgattt tggttgatga tgttctgttt
    23821 accggcagaa ccattcgggc ggcacttgat gcactcttag attttggcag agctgccaga
    23881 attgaactgg tgatttttgt cgatagaggt catcgggaat tgcctatccg agccgattat
    23941 gtcggaaaaa atattccaac ggctaaaaac gagcaaattc aggtgcaaac gctctcgtat
    24001 gatgggatta accaagtggt cttagttcct gctgccaata aagaaagtgc ttaaattaag
    24061 tgaacctttt cgctaaactt atctctaagg aaaagttact gcttaattac ctccattagg
    24121 attgttataa aaatgaaatt agtcaaatca ttatttgctg ttgccgttgc aacaatgagt
    24181 cttacccaaa ccgcccacgc atttgaagaa agagtggtgg cgttagtgaa tgatacccct
    24241 attatgcaaa gccaggttca acgtgtgctt ggcaagaaaa aggcgacaga aactgctcaa
    24301 cgtgcggcta ttgatcaagt gattgatgat atgttggtgc aacaggcaat gaaagaagcc
    24361 ggcgttaaag tcagcccagc tgcggtaaac caagcggttg aaaatgtagc aattcaaaac
    24421 ggcattactt acggtcagtt attagatgcg ttagattatc aaggtattac acttgaacaa
    24481 ttcaaacgta atattgctca acaaatggca atggaacaag ttcgccatat cagcattagc
    24541 aaatcgattc aggttgcacc acagcaagtg caagctctgg cgaaagagtt aatggcgaaa
    24601 gataaagcag caggcaaatt gaaaaccgtt tctggcaaag agcatcgcat tagtcatatt
    24661 ttgctcaaaa ccaacccgat tttaaatgat gctcaagcca aagcaaaact tagcagctta
    24721 actactgata ttaactcagg caaaatcagc tttgaagaag cggcaaaaac ccattctgtt
    24781 gattatgcct caggggcaga cggtggagat ttaggtttta acttcttaga aatttacgat
    24841 ccggcatttg cgaatgttgc atcaaaaatc aaaccaaacc aaatttctgc tccgtttaaa
    24901 tcgcaatttg gttggcatat tttaaaagtc accgacactc gtaacggaga cagaaccgaa
    24961 gatgcttacc accaacgtgc ttatcagcaa ctggtgaaca agcaagccga agaagcctct
    25021 aaagattggg taaaagcgct tagaaaaacc gccaatattc aatatgtcgg tcaataatta
    25081 aaatttttaa gaacctcgca taatgcgggg ttcttttctt atttcaaaaa ggataacaat
    25141 gagttctaca aattccaaaa aacatttagg tcataccgct cgtaagcgtt tcgggcaaaa
    25201 ctttttgcac gatatgaaca ttattcacag catagtttca gccattaacc cgaaaaacgg
    25261 acaattttta ttagaaatcg gtccgggttt aggagcatta accgagccgg ttgccgaatt
    25321 ggtagataaa ctcacggtgg ttgaaattga ccgtgattta gcagagcgtt tacgccacca
    25381 cccgttttta aaccaaaaac tcaccattat tgagcaagat gccctacgct ttaatttccg
    25441 tgactatttt aaccaactca acttagacga agactcggtg cgtgtgtttg gtaacttacc
    25501 ttacaacatt tctacgccct tgatattcca cctgctgacc tttcacgact taattcaaga
    25561 tatgcacttt atgttgcaaa aagaggtggt gaaacgttta tgtgccgcgc caaacagtaa
    25621 agcatacggg cgtttaacca ttatggctca atactattgc caagtaattc cggtgctgga
    25681 agtgccgcca accgccttta aaccggcacc aaaagtcgat tctgcggtag tgcgtttagt
    25741 gccttataac caactgcctt atccggcaaa agatgtgtat tggctcaatc gggtcacgac
    25801 tcaagccttt aaccaacgcc gtaaaacctt acgcaatgct ctttcaaccc tgtttagtgc
    25861 ggagcaactg gacgccttag gcgttgattt aaccgcccga gcggaaaacc ttaccattgc
    25921 cgattatgtg cgtttggcta actggctaca cgacaacccg ccggcaattg atacaaccga
    25981 agaattggtt gatgaagatt gctaatcaat aaattacaag cggtcatttt tctaccaaga
    26041 tttgcaaatc tttagtgaaa aatggccgct tgtttaaatc agctttactt gttttgctgt
    26101 tacttagttt tgatgttact tggtgccgaa aattttatcc cctgcatcgc ctaagcctgg
    26161 aatgatatag ccgttttcgt ttaagtgact atcgattgag gcggtgtaga gttcaacatc
    26221 tgggtgggcg gcttctaata ctttaatccc ctctggagcg gcaactaaca ctagcacttt
    26281 aatctgctta cagcctgctt ttttcaggag gtcaatggtt gctaccattg agccaccggt
    26341 tgcaagcatt gggtcggtga taatggctaa acgctcatca acatcgttgg ctagtttgga
    26401 gaaatacggc acgggcttta aggtttcttc gtcacgataa atcccaacca cactaattct
    26461 ggcacttgga atatgctcta acacaccgtc catcatacct aagccagcac gcagaatcgg
    26521 cacaacagtc acttttttgc ctttaattcg ctcaaccgca attttctctc cgctccagcc
    26581 attgatctcc acactttcca tttccagatc tttggttgct tcgtaagtaa gcagactacc
    26641 aatttcattc gctagctcac ggaaatcttt ggtgctgatt tccgcttcac gcattaagcc
    26701 caatttatgc tttacaagtg ggtgttttac ttcaacaatt ttcattttaa gctccttaat
    26761 tagtgtaatt taagccttat tcacctttgc taattcttcg tctcttaaca ctcggcgaag
    26821 aattttgccg acattacttt ttggtaattc gtcacggaat tcgatgtctc ttggaatttt
    26881 gtagccggtt aagaattgac gacaataggt tctcaattca tctcgagtta aactttcatc
    26941 ttttttggtt acaaaaattt taatgctttc gccggaagcc tcactcggca caccaatcgc
    27001 cactacttca ttcacttttg ggttttggga aatcacttct tcaatttcgg ttgggtacac
    27061 attaaaaccg gagacaataa tcatatcttt tttacgatca acaatgcgta agttcagatc
    27121 atcccccatt accacaatgt caccggttgc catccaacca tcttgtagca cttgtgccgt
    27181 ttcatcagga cggttccaat agccttgcat tacttgcggc cctttcacca ccagctcgcc
    27241 ccgttcgccg agtggtactt ctttgccttc atcatccaca atacgaatgt cagtatttgg
    27301 cactggcacg ccaatagagc cggaatattc caccgaatcg ccacgggttg cactaatcag
    27361 cggagaacat tctgtcattc cataaccttc gataatatgt acgccggtta aatcgtgcca
    27421 gcgttttgcc acgctagatt ggatcgctgc accgccacct acacttaatt ttaggtgtga
    27481 aaaatcaacc tctttaaaac tttcgtgatt aagtaatgca ttaaacaatg tatttacccc
    27541 agtaatcact gaaactttgt acttttttaa ttctttaata aagcctggaa tatcgcgcgg
    27601 attagtaatt aataatccgg taagtcctaa ttcgataaag agcaagcaat tcatcgaaag
    27661 tgctaagacg tgatacagcg gtaaaggtac caatccaatc atattggcag aattacccaa
    27721 caatggctca acaatccatt ttgcctgcat catattagca attaagtttt gatgagtcag
    27781 cattgcccct ttcgctacac ctgtagtacc gccagtgtat tgtaaaaagg cgagatcttg
    27841 gctgacaata ttcggtttta catattgacg ctgtttgcca atgcttaagg cttcacggaa
    27901 gctgaccgca tgtggcaatt tatatttcgg cactaatttt ttgatgtatt tcaccacaaa
    27961 attgactaag gtgcgtttgc cgaatgaaag ttggtcgccc attcgggtca aaataacgtg
    28021 cttaatctca gtattaaaga caattttttc taaggtagcc gcgaagttcg agactatcac
    28081 aatcgctttc gcaccactgt catttaattg atgttctaat tcacgcggcg tataaagcgg
    28141 gttgacattc accaccacaa gcccggcacg taatgcgcca aataaagcga tcggatattg
    28201 caataaattc ggcatcatca atgcgattcg atcacctttt ttcaggcgta attcattttg
    28261 caaataagcg gcaaacgagc ggctacgttc ttccaattta cggaacgtta aaacctgccc
    28321 catattaata taagctggaa tatcagggtg gcgttgtatc gctgcttcaa acatttccac
    28381 taaagattca tattgatctg tttcaatcgt ttttggtgaa taaggcggat aattatttag
    28441 ccatattttt tccattatag tctcctaaaa ccttacctaa aaagataggt gaaaaatttg
    28501 cttgtttgct gtgtttatga atcaattttc ttacagccca gaatgttata cctgttgaaa
    28561 gcaacattat aaataaaaca ataagctcat ttgcaaaaaa ttgcgaaaat ccgaccgctg
    28621 tcatcacaag aaccagcaga ggaatgccat aaattaaaaa cacgcttttg agcaagatat
    28681 tttcagctaa ccctagttca accttatcgc ctacttttag gggttcatct acctcaatac
    28741 gaaaacgagg gtcaattttt tcacctgcta atgctgataa tgctttgctg ccacaagcag
    28801 actgagctac acagccacca cagctacttt tagcataaca ttgtacaata gccacaccat
    28861 tctgatattc caccaccgta gcctgttcga tcatcatggc tgagctcctt ccttaaaacc
    28921 aatattgttc ataatttgct tagccgattg caacggcaca tcaccaataa tcacaatatc
    28981 tctatcatta atcgtttgat ttaaaatcgt taatttacct tgttgccaag cgtactcatt
    29041 aaaactcacg ccttggctag gcataatata aatagttaat gtagataaac catcactata
    29101 tactctgcta tctacatact cactttccac ttgatatgtc gcacctgtga ctgtttgttg
    29161 ctgaattaac ctaaaccctg tcggcaacca cttcacctgc caaccatcag acttaggaaa
    29221 ttcttctttt ttcactgtcg ttaatgttgg taacattagt gattctatta catttgcaat
    29281 cctatccaat tctggagatt gataaagttg caaaactctg aattcttcta ataccaaatt
    29341 atccatattc aagacttggc ttttaagtaa taaatgtgtt tcttcatcaa tccatagtat
    29401 ataggcatat cttaaagtat catttggctt catacgaatt acctttgtaa ttcggtcaga
    29461 aatacgatct ttaccagcat ctaaaaaggc ataacctttt aaatttgcat aatctgtgta
    29521 aagtacatta gggaggttat ctaaaatctg tgaactattt aaactaaaag gacgaaaatt
    29581 ataccccaaa tagctgacct tgttattttt taaaataatt tcttctcggc tgtgatctaa
    29641 attcagtaat tgggcatatt ctttattatg ggtaaaagca tgacgtaaac ggaaagattc
    29701 tgtatcactt ccctgttgaa gaatataaac taattcataa gtggattttt tatgtgcttc
    29761 tgacatagcc gttaaatatg ctaatggtgt tttaatagtt gattctgccc aagca
//
LOCUS       DANLXK010000016        28610 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.016, whole genome shotgun sequence.
ACCESSION   DANLXK010000016 DANLXK010000000
VERSION     DANLXK010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28610
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            25..999
                     /gene="znuA"
                     /locus_tag="PXD88_000606"
     CDS             25..999
                     /gene="znuA"
                     /locus_tag="PXD88_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL6280213.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(1051..1371)
                     /locus_tag="PXD88_000607"
     CDS             complement(1051..1371)
                     /locus_tag="PXD88_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL6280214.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            1512..3875
                     /gene="rnr"
                     /locus_tag="PXD88_000608"
     CDS             1512..3875
                     /gene="rnr"
                     /locus_tag="PXD88_000608"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL6280215.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            3879..4145
                     /locus_tag="PXD88_000609"
     CDS             3879..4145
                     /locus_tag="PXD88_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280216.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            4368..4826
                     /gene="mraZ"
                     /locus_tag="PXD88_000610"
     CDS             4368..4826
                     /gene="mraZ"
                     /locus_tag="PXD88_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL6280217.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            4842..5780
                     /gene="rsmH"
                     /locus_tag="PXD88_000611"
     CDS             4842..5780
                     /gene="rsmH"
                     /locus_tag="PXD88_000611"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL6280218.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            5799..6110
                     /gene="ftsL"
                     /locus_tag="PXD88_000612"
     CDS             5799..6110
                     /gene="ftsL"
                     /locus_tag="PXD88_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL6280219.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            6114..8174
                     /locus_tag="PXD88_000613"
     CDS             6114..8174
                     /locus_tag="PXD88_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL6280220.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNGHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTIHKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            8183..9673
                     /gene="murE"
                     /locus_tag="PXD88_000614"
     CDS             8183..9673
                     /gene="murE"
                     /locus_tag="PXD88_000614"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL6280221.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            9761..11155
                     /gene="murF"
                     /locus_tag="PXD88_000615"
     CDS             9761..11155
                     /gene="murF"
                     /locus_tag="PXD88_000615"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL6280222.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            11176..12258
                     /gene="mraY"
                     /locus_tag="PXD88_000616"
     CDS             11176..12258
                     /gene="mraY"
                     /locus_tag="PXD88_000616"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL6280223.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            12322..13623
                     /gene="murD"
                     /locus_tag="PXD88_000617"
     CDS             12322..13623
                     /gene="murD"
                     /locus_tag="PXD88_000617"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL6280224.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            13623..14801
                     /gene="ftsW"
                     /locus_tag="PXD88_000618"
     CDS             13623..14801
                     /gene="ftsW"
                     /locus_tag="PXD88_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL6280225.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            14920..15975
                     /gene="murG"
                     /locus_tag="PXD88_000619"
     CDS             14920..15975
                     /gene="murG"
                     /locus_tag="PXD88_000619"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL6280226.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            16051..17478
                     /gene="murC"
                     /locus_tag="PXD88_000620"
     CDS             16051..17478
                     /gene="murC"
                     /locus_tag="PXD88_000620"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL6280227.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            17568..18479
                     /locus_tag="PXD88_000621"
     CDS             17568..18479
                     /locus_tag="PXD88_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL6280228.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            18479..19270
                     /locus_tag="PXD88_000622"
     CDS             18479..19270
                     /locus_tag="PXD88_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL6280229.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVIIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            19293..20564
                     /gene="ftsA"
                     /locus_tag="PXD88_000623"
     CDS             19293..20564
                     /gene="ftsA"
                     /locus_tag="PXD88_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL6280230.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            20597..21844
                     /gene="ftsZ"
                     /locus_tag="PXD88_000624"
     CDS             20597..21844
                     /gene="ftsZ"
                     /locus_tag="PXD88_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL6280231.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            21876..22796
                     /gene="lpxC"
                     /locus_tag="PXD88_000625"
     CDS             21876..22796
                     /gene="lpxC"
                     /locus_tag="PXD88_000625"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL6280232.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRAV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            22969..24651
                     /gene="recN"
                     /locus_tag="PXD88_000626"
     CDS             22969..24651
                     /gene="recN"
                     /locus_tag="PXD88_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL6280233.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(24698..24773)
                     /locus_tag="PXD88_000627"
     tRNA            complement(24698..24773)
                     /locus_tag="PXD88_000627"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24738..24740),aa:Ala,seq:ggc)
     gene            complement(24853..26292)
                     /gene="gltX"
                     /locus_tag="PXD88_000628"
     CDS             complement(24853..26292)
                     /gene="gltX"
                     /locus_tag="PXD88_000628"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL6280234.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            26467..26542
                     /locus_tag="PXD88_000629"
     tRNA            26467..26542
                     /locus_tag="PXD88_000629"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26500..26502,aa:Val,seq:tac)
     gene            26591..26666
                     /locus_tag="PXD88_000630"
     tRNA            26591..26666
                     /locus_tag="PXD88_000630"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26624..26626,aa:Val,seq:tac)
     gene            26719..26794
                     /locus_tag="PXD88_000631"
     tRNA            26719..26794
                     /locus_tag="PXD88_000631"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26752..26754,aa:Val,seq:tac)
     gene            26843..26918
                     /locus_tag="PXD88_000632"
     tRNA            26843..26918
                     /locus_tag="PXD88_000632"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26876..26878,aa:Val,seq:tac)
     gene            complement(27072..28565)
                     /gene="mltF"
                     /locus_tag="PXD88_000633"
     CDS             complement(27072..28565)
                     /gene="mltF"
                     /locus_tag="PXD88_000633"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL6280235.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT         8676 a         5506 c         6386 g         8042 t
ORIGIN      
        1 attaaatgcc ataaggggaa ttttatgttt aaaagaacat taatcggtct agccgtgtta
       61 ggtgcaagtg ttgctcaagc ggatgtatta accagtatta agcctttagg ctttattgcc
      121 agtgccatta ccgaaggggt aactgaaact aaagtattat taccggtaac tgcctctcca
      181 cacgattaca gcttaaaacc ttcagatgtg actcaattac aatctgctca attagtggtt
      241 tgggtgggtg acggcttgga aggcttttta gaaaaaagta ttgaaaaact gccgagagaa
      301 aaagtattaa cccttgaaga tgttgatgcg attgatgata ttgtcgataa agcaagcaaa
      361 aaagaagata aagacgatga tcacgatcat aaacatgaac ataagcacga acacaagcac
      421 gagcataaac acgaagggca taatcacgaa ggacataacc acgatcatca cggacatagc
      481 cacgatgaag attggcatat ttggctctca agcgaggcaa gtgagctggc agcagagcaa
      541 attgcggcac gtttaagcga acaaatgcct gaacacaaag cgaaaattgc ggaaaatctt
      601 gcaaaattta aagcaaatct aaccgctaaa aaagccgaaa ttgcgaaaca attagagccg
      661 gtaaaagcca aaggttacta cacattccac gatgcttacg gctattttga aagagaatat
      721 ggtttaaatt cattgggttc atttaccatt aacccaactg ttgccccggg tgcaaaaaca
      781 cttacagcaa tcaagaaaaa cattgcgaaa aacaaagcac aatgtttatt tgccgagccg
      841 caatttacgc cgaaagtaat tgaaacctta gcaaaagaaa ctaaagtaaa tgttggccaa
      901 ttagacccac tcggtgcaaa agttcagtta agtgcgactg cttaccctga atttttacaa
      961 gttttggctg acgaatttag ccaatgttta acaaaataag ttaaaaatcc cccatttaaa
     1021 tataaatggg ggattttgcg attacatcac ttaagctttt tttaagaatt ctgatttcaa
     1081 cataatttta ccgcaatcga cattatggtc accttgagct aaacggattc ctttgaattt
     1141 tgtacctttt ttcagtactt cagacgagcc ttttaatttt aaatctttga ttaataatac
     1201 atcgtccccg tcagataata aattgccatt actgtctttt acaattagca catcatcatc
     1261 ttgatccgtt tcttcgcccg tccattcata cgcacaatcc gggcaaacaa attgaattga
     1321 gtcgtggtaa gtattttcgc ttttacattc agggcaggtt gggtaaatca ttttaattcc
     1381 tcaaattaat aaagaaccag attatatacc gaaatccagc aaaacgctaa gcggtcatat
     1441 tttgccgatt ttttaccaat cgagctaaaa gtcagttaga atagccttaa ttacacaaaa
     1501 aggaggatac tatgatagtc gatccgaatt atcagcaaga attagaaaaa tacgaaaatc
     1561 cggtaccaag ccgagagttt attttaaata caattcgtga acataacgcc ccaatgagcc
     1621 gtgatgaatt attgtcggct tttcatattg acgatgaaga acgaatggaa ggcattcgcc
     1681 gccgtctgcg tgcaatggaa aatgacggtg aattggtgtt caccaaaggc aaacgctatg
     1741 cgttgccgga aaaaatggat ttaatcaaag gtacagttat cggccatcgt gacggttacg
     1801 gttttttgca agtggaagga cacgaaaaag gggcgactaa aagcgaagat tggtttattc
     1861 ccaacgccca aatggtaaag gtaatgcacg gtgactttgt gctggcacaa ccaaacggca
     1921 cagaccgcag aggtcggaaa gaagtccgca ttgtgcgagt gttggaggcc cgtaagaaac
     1981 agattgtcgg gcgttttttc cttgaaagcg gtatcggttt tgttgtgcct gatgacagcc
     2041 gcgttaacca agatattctc attccggatg aacaccgtat gggggcgaga atggggcaag
     2101 ttgtggtggt ggaattacag gaaagaaaag cgagttttag ccgcccggtg ggaatcatta
     2161 ctgaaattct aggcgataat ttagcgccgg gaatggaaat tgaaattgcc ctacgcaatc
     2221 acgatattcc gcacatttgg ccggaagggg tagaaaaaca aatccgccaa tttagtagcg
     2281 aagaagtgcc ggaagaagcc aagcaagggc gggtggattt gcgagatctg ccactgatta
     2341 ccattgacgg cgaagatgcc cgagatttcg atgatgctgt atttgccaaa aaagagggca
     2401 acggctggcg gttatgggtg gcgattgccg atgtaagtta ttatgttcgc ccaaaaaccg
     2461 cattagattt ggaagcccta aatcgtggta actcggtcta tttcccgaat cgggttgtgc
     2521 caatgttgcc ggaagtgctt tccaatggct tgtgttcact caatccacag gttgacaggc
     2581 tctgcttggt ggcggaaatg tcggtttcca gcaaagggga attacaagat tatcaattct
     2641 acgaagcggt aatgaactct cacgcccgtt taacttacac taaagtgtgg aaaatgttgg
     2701 aaggtgatga agccttgcgt gaacgctatg ctccattagt gccgcatatt gaagaactct
     2761 atgcaatgtt ccaaacctta atgaaagctc gccataaacg aggggcgatt gaatttgaaa
     2821 ccattgaaaa tcaatttatt ttcaatccgc aagggcgaat tgagcgaatt gagccgttaa
     2881 tccgcaacga tgctcataaa ttgattgaag aatgtatgat tttagccaat attgctgccg
     2941 ctcgttttgt ggaaaaagcg aacgaaccgg cgttatatcg gattcacgat aagccgagtg
     3001 aagaaaaatt gctcagtttt aaatcctttg tgcgtgagtg tggcttaacc tgggacgtag
     3061 gcttagatcc aaccccaaaa gattacggtg tactactgga gcaaattgcc gaacgtgccg
     3121 ataaagagtt gattcaaacg atgttgctcc gctcgctgaa acaagcagtg tatgcggcgg
     3181 ataatatcgg gcatttcggc ttggcattaa ccgaatatgc tcattttacc tcgccgattc
     3241 gccgttaccc ggatttactg ttacaccgtg caattaaata tctgatcgaa aaaggcaaag
     3301 gcaacactcg ctactatacc gatggcggtg gttatcacta caagttagat gatatggacg
     3361 aattcggcga taaatgttct gccaccgaac gccgagctga tgaggcaacc cgagaagtgg
     3421 cagattggct gaaatgcgaa tttatgcaag atcatcttgg cgaagagttt gatggcgtga
     3481 tttcgagtgt taccggcttt ggcttatttg taaaactcaa tgagctttta attgacggat
     3541 tggttcatat ttcaacgctg gataatgatt attaccacta tgatgcggac cgacaacgtt
     3601 taatcggtgg cagtgggatc atctatcgtt taggcgatgc agttagagta aaagtaatca
     3661 atgtgaattt agacgagaaa aaaattgatt ttgagttact caccggtaat aagaaaaccg
     3721 gcaaaaccgc caagaaaaaa gcaaaagcga cagaggttcc tgttttcaaa gagcctaaaa
     3781 cggtaaaaaa agccaaaaaa gtcgctgaga aaaaaccggc aaaatctgca aaaaaacgga
     3841 caaaaacgac cgctagtaaa tcaaggaaaa aatagcaaat ggattacaaa aaacaaattt
     3901 tattcagcct tttatttgct ttagtaattg caataataag ctattttttg tttacctata
     3961 tcccgtttga ttgtagcgat ctgagcaaac tcaacgattc acaacgttta gagtgccgaa
     4021 ctgccgaatt tctgggcgtt tattactggc tgccgcacac taccacgctg tttttcggct
     4081 cggtgttatt atattgggcg gtttatggca tgatttcatt agtgcaagca gtgctcaaac
     4141 gctaacaagc agttttgttt ttgcaaaaag ttgcaaatct catctgaata atccttccaa
     4201 gatcaaaggt ctatcaaaaa agatagacct ttattgtgta aataaactaa aactccttga
     4261 tagatgtatc acatatctat aaaattccag caattaagtg ggaaaaagtg gtaaattgtg
     4321 gaacttttcc ttaaatttaa cctcatttaa aaaggtaaat cagtaaaatg tttcgtggtg
     4381 caagttcaat cagcattgat agcaaagggc ggatcgctat tccgacccgt tatcgtgccg
     4441 agctattgga aaaacatcac gggatcttag tttgcactgt ggatatccgc cagccttgtt
     4501 tgttgcttta cccacttcac gaatgggaaa tggttgaaca gaaattgttg gcactatcta
     4561 attttgaccc tgttcaacgc cgtattcagc gagtaatgca aggctttgct accgaatgtg
     4621 aaatggattc ggcagggcga atactgctta gccctacact tcgccaacac gcacaattag
     4681 agcaacaaat tatgctggtt ggacaattaa acaaatttga aatttggcaa gataaacaat
     4741 ggcaagcaca aattgccgaa gatcttgctt ttggcagttc ggcagaaatt ttagactgcg
     4801 aagcattgaa aaacctgtct ctctagtaat tggaaattga gatgagcgag aacccaaaac
     4861 atattacagt attattgcac gaagcggttg acggcttggc aattaagcct aacggtatct
     4921 atattgacgg tactttcggg cgtggcgggc attctcgctt gattttatcc aaactgggcg
     4981 aaaatgggcg attaatcgca actgatcgtg acccacgagc gatagccgaa gctcaaacga
     5041 ttagtgaccc tcgttttcaa attgaacata cggcattttc tgccattccc gaactgtgtg
     5101 aacgaatggg gttggtgggc aaaattgacg gtattttatt ggatttaggt gtgtcttccc
     5161 cgcagcttga cgaagccgaa cgaggcttta gttttatgcg tgacgggccg cttgatatgc
     5221 gaatggatac caccaaaggc ttatcggcag ccgagtggct tgcccaagtt tcggcagaag
     5281 atttagcttg ggtattgaaa gaatttggcg aagagcgttt tgccaaacgg attgcacaag
     5341 cggtcgtttc ttacaataaa tctgcaaatg aaaaaatcag ccgcactttg cagcttgcgc
     5401 aaattattgc ggatgcggtg ccgtttaaag ataagcacaa acaccctgca acccgttcgt
     5461 tccaagcaat tcgcattttt atcaatggtg aattagacga gctggaaaaa gctttaaatt
     5521 ccgcattaac ggtgttagcc cctgaagggc gtttgtcgat tatcagcttt cattctctag
     5581 aagaccgaat ggtgaaacag tttgtgcgta agcatagtaa aggaatggac gtaccccgtg
     5641 gtttaccgat tttagaagca gagctaacca aaaatattcc gctgaaaacc attggcaaag
     5701 cgattatgcc gagcgaagcc gaaattgaag caaatgcccg ctcacgcagt gcggtattgc
     5761 ggattgccga aaaacgctaa cagtaaatag ggaagaatat gtcgaacgaa cgttatccgt
     5821 tacatcaaat catcattgat gatatcttta gccataacaa agtggctctt ttattgttga
     5881 ttggtgtagt gatttcagca gtggctacga tttggataac ccaccagact cgtttatcgg
     5941 tgagcgaaca agggcaactg attcaagcaa accaaaagtt ggaaagccaa tatactaatc
     6001 tgcaattaga agaaaacagc agaagcagtc gggcaagagt tgatgccgcc gctaaatcgt
     6061 tcggattaca gccgattaaa aaagagcaag aaattatttt agttgaataa aaaatggtta
     6121 aatcagttaa attaaaacgt aagcaagaag cccctgtcgc aaaagcagag cctcaacaag
     6181 cagaaggtaa aaaaacaccg agttttttac ctactcgctt tagagtggtt gtgtttttta
     6241 tgctattaat ggttggtggc ttactagcac aaaccgccta tattcagctt tttgactctg
     6301 aaagattaat taaagaggct aataaccgct cacttcgtac taaagaactc caatttaccc
     6361 gtggacgtat tttagatcgt aacgggcgtt ttctctctat tagtgtgcca atgtactcat
     6421 taacacttga cccgagagaa tactttgata ctaagctgcg tcgttctaac gaaagctggc
     6481 gtgccttagc gattgaaatg gaaacatcaa aaggtaaaat tgaggcaaac gttaataaat
     6541 ttattgaaaa gaaaaatttt tcaaaagaaa aagtagattt tgatccacgt tctattttaa
     6601 atactaaaag tgaaggttat tggactcagc ttgcccaagt tacaggtttg gattacaaca
     6661 gtttaataga aaaagtacgg aataacccta gctcggtttt tttacgttta gataacgaaa
     6721 atttagtaag agaacgccag aaattccaag cgttaagcaa agaaatcggc cgttcctata
     6781 atgacataat ggacgagctt tatagcaaaa accgccagcg attcctttac ttatcccgtc
     6841 atcaatctga agcgatcagc gaatatgcaa aagaactaga tattgatgca ttagtgatta
     6901 aagtcgaatc acgccgtttt tacccgctgg cagaagaatc ttcacagttg atcggtttta
     6961 ctgataaaga tgatatgcac ggttcggaag ggctggagcg tagttttgat tccttactta
     7021 tcggcaaaaa cggtaaacaa attatccgaa aagatgccaa aggcaatatt gtggaaaata
     7081 tccgttcgga gaaacagtac gatccgcaag atgttatgtt aagcattgat gaagaattgc
     7141 agtctatggt gtacggtgaa atcaaaaaag cggtacagga aaataatgcg gaatcaggca
     7201 ctgcggtttt ggttgatgtg caaaccggcg aaattttggc aatggcaaat gccccttcat
     7261 tcaacccaaa caaacgggat agttttaaac ctgaattaat gcgtaaccgt gctattaccg
     7321 acacttttga accgggttca acggtgaaac cttttaccgt attaaccgca ttacaaaatg
     7381 gggtaactta tcgtgatgaa gttattggca ctcgcccatt tgtcgtcaat ggacatacaa
     7441 ttaaagacgt tgctccaagg gacagcctta cgcttaccgg catcttgcaa aaatccagta
     7501 acatcggggt cagtaaatta gccctcagaa tgccggcaaa tgcgttagtg gatacttaca
     7561 cgaaagtcgg tttcggtaaa gacaccggtt taggcttggg tgaacaacga ggtacgaacg
     7621 gtgatcgcaa acgttgggcg gatattgaac gtgctaccct ttcctatgga tacggtttaa
     7681 atgtgacccc attacaactt gcccgtgctt atgcgacttt aggaagtttc gggctgtatc
     7741 gcccactttc gattaccaag gtcgatccgc cggtgattgg cgaacgggtg ctaccggaaa
     7801 aaaccacccg agatgtcgtg catatgatgg aaagcgttgc ggctaaaggc gaaggcggac
     7861 accgtgcagc ggtggacggc taccgtgtag ccatcaaaac cggtacaata cacaaattag
     7921 aaaaaggtaa atatgttgaa aaatatattg cttataccgc agggcttgcc ccggcaagcg
     7981 atcctcgctt tgcattagtg gtattaatca acgaacctaa agcaggcaac tattatggtg
     8041 gctttgtttc tgcaccactg ttctcacgca ttatgggtta caccttaaaa caacgtaata
     8101 ttaagccgga taacttaacg gaaaataccc aaagtgccgt gcgtgaaatt aaattagaac
     8161 gccctatcaa ttaaggttag ctatgaaacg tttactccct tttctgacag aacttgatgc
     8221 ttgggtggaa gaactcaccg agctaaaaca aatgacactt gatagtcgcc aagttcaagc
     8281 cggtgatctc tttgttgctt taaaaggaca tcaagtcgat ggcagaaaat ttattccgaa
     8341 tgcgatagaa caaggagcag caattatttt ggctgaggct gatgaagatc aaccggaaat
     8401 tgagcttgat ccgaaatttg caaaatttaa cctagatcgc accgcttgtt gcaaggttgt
     8461 ctctgttcca cgtctgccaa aattgctctc tgaaattgca ggagctcttt accataaccc
     8521 gtcacacaag ctgactttag ccggcattac cggcacgaac ggtaaaacga ctactgctca
     8581 attattagca caatggcata atttattggg tgggaaatcg gcagtaatgg gtactatcgg
     8641 caacggtttg tacggacaag tgcaagaagc ggtaaatacc accggctctg ccattgaaat
     8701 tcagcataat cttgcgaact ttgttgaact tggagcggat ttttgtgcga tggaagtcag
     8761 ctctcacggt ttggctcaat ttagagccga agccttggat tttgatttag cgatctttac
     8821 gaatttaagc cgagatcacc ttgattacca caacacgatg gaagagtatg cccaagccaa
     8881 attccgtctc ttcaacgaat taagcaccaa agctcaagta attaacgccg atgatgaaat
     8941 cgggcgtgaa tggctgacac aattaccaaa tgcagttgcg gtaagcaccg atccgaagtt
     9001 tgcaggcaac caccaatttg tcaaagccac tgcggtaaaa tttaccctac aaggggcaag
     9061 tattgcgttt gaatcaagtt ggggcaatgg cgagttacat agccgtttaa tcggggcttt
     9121 caatgtaaat aatctgctta ccgcctttgc cggactttta gctcttggct ttgatattca
     9181 agaactggtt aaaaccgccc cgaatttagt tggcgtagca ggtcgaatgg aatgcattac
     9241 cgctccaaat aagccaatgg taattgtgga ctatgctcac acccctgatg ctcttgaaaa
     9301 agccctacaa gcggctcgtt tacattgcga aggcgaactt tggtgcattt tcggctgtgg
     9361 tggagaccgt gacgccggca aacgcccatt aatggcgacg attgccgaga aattaaccga
     9421 taaagtgatt gctacagacg acaaccctcg caccgaagat aatcaaaaga ttatggcaga
     9481 tattgtgaaa ggttttagta aaccccaaca aattatccac aatcgtgaag aggcaattaa
     9541 aaccgccatt gagcaagcta aagccacaga tgtgattcta atcgcaggca aaggtcacga
     9601 agattatcag attattggca cagagaagtt acatttttcg gatcaggaaa cggcaaggaa
     9661 atatctgttt taatgtcact ttctttgcac aagcaaagaa aagtgacagt gacaaataca
     9721 aaatgctcgt aattaatttt ataaagaaaa agataaatca atgataaaac taaccaccca
     9781 acaaatcgct gaaatcctaa atgccaaatt gatcggcaat ggcgaaactg tggtagaaac
     9841 caccagcacc gacacccgac aagcggttga aaacggctta ttttttgcat taaagggcga
     9901 gaactttgat gctcatcact atcttcaaaa tgcagtcgca caaggttgtg tagcggttgt
     9961 ggttgagcgt gagtgtgaaa ttgatgtacc acaacttgtg gtggcagata cccgtttggc
    10021 attgggggaa ttggcgaaat ggttaaaagc taagctgaac ccgaaaacgg tagcgatgac
    10081 aggttcttcc ggcaaaacaa ccgtcaaaga gatgacggca aaaattctgc aaaaaatgac
    10141 cgcttgcgaa caggaagtgc tttatacttt tggtaactta aacaatgact taggtgtacc
    10201 gatgaccttg cttcgcttaa ccgaacagca taaatatgcg gtcattgagc tgggggcaaa
    10261 tcatatcggt gaaatcgctt ataccaccgc tatcgctcag cctgatgcct gcttggtgaa
    10321 taatgtggct gcggcgcatt tagaggggtt tggttcatta gcaggcgtgg cacaagccaa
    10381 gggcgaaatt tatcgtggct tgaaagaaaa tggcaaagcg attgtcaatt tagcttttta
    10441 ttatccgcaa tggcaaaaag agattggctc acgggaaatg caatctttct cttatatcgg
    10501 gtcagattcg gattcttacg cagattactg ggcggaagat gtagaactgc atttaagcgg
    10561 ttcacgcttt acgctacata ccccacaggg cgaaattgct attgatctgc cttatttggg
    10621 caaacataac gtgagcaatg ccttagcggc aacttcgctg gcgatgtctg ttggggcaac
    10681 gctagaagca gttaaggcag ggcttgagca gcgttcaatg gtaaaagggc gtttgtatcc
    10741 ggtgcaaatt aacgaccact gtttgtttat tgatgacact tacaacgcca atgtggattc
    10801 aatgaaatcg gcgatttctg ttttggaaaa ttatccggct tatcgtattt ttgcagtggg
    10861 tgatatggcg gaattgggtg aagaaagtag caaatgccac caagaagtag cggattttgc
    10921 caaaaatgca gcattagatt taatcgtgag ctttggaaaa gaaagtgcgg taatcagcca
    10981 acaggcagaa catcatttta ccgataaaca gcaaatggtt gatttcctac tgccgattat
    11041 tttgcaaaaa atcgaacaaa aacaaccgct tgtattattg gcaaaaggct ctcgtagcca
    11101 gaaaatggaa accgtgattt ccgaattgtg taaaccgttt aacctaaatt tctaattatt
    11161 tttaaggact aagcaatgtt agtttggctt gcagaactat tggttcaata taacacagcg
    11221 tttaacgttg tctcttatat tactttccgt gccattatgg cgttattaac tgcaatggga
    11281 atcgggcttt ggatcgggcc gaaagtaatt cgccgtttgc agatcttaaa atttggtcag
    11341 gaagtgcgta atgacggacc ggaaagccat ttcaaaaaac gtggtacgcc aacaatgggc
    11401 ggagtgatga ttctcgcagc gattggggtg agtacattgc tttgggcaga tctgcgtaat
    11461 tcctatgttt ggttcacgct gtttgtgcta tttggctacg gtgcagtggg ctttgttgat
    11521 gattatcgta agatctctcg taaaaatacc gatggtttga ttgcccgttg gaaatatttt
    11581 tggttatctg ctatcgcatt agtggcggtg tttggtatgt atgcggtggg taaagatacc
    11641 gctgcaacac aattagtcgt gccgtttttt aaagatgtga tgccgcaact cggtttattt
    11701 tatattgtgt tatcctattt cgtgattgtc ggcaccagta atgcggtaaa cctaacggac
    11761 ggcttagacg ggcttgcgat tgtgccaact attatggtcg catctgcctt tgcgttaatt
    11821 gcgtgggcaa ccggtaactt taattttgca caatatttac atattccttt tattccaaat
    11881 gccggtgaat tggttatttt atgtactgcg attgtgggag caggtttagg gttcttatgg
    11941 tataacacct accctgcaca ggtgtttatg ggcgatgttg gctcactttc gctcggcggt
    12001 gcattaggcg tgattgcagt attagttcgc caagaattat tattggtggt aatgggcggt
    12061 gtatttgtgg ttgaagccct ctcggtgatt ttacaagtag gttcatacaa attacgccaa
    12121 aaacgtattt tccgaatggc tccaattcac caccattttg aactcaaagg ctggtctgaa
    12181 ccacgggtta tcgtgcgttt ctggattatc acgctaatgc tggttttagt cggcttagta
    12241 acattgaaat tacgttaatt gattgaataa ggtgcattga gataatgtac cttatgttat
    12301 ttttaaatta cagaataaat tatgcaaaaa caatacgaaa acaaaaccgt tactattatc
    12361 ggcttaggta caacagggtt atcttgtgtg gatttcttta agaaaaaaaa tgccaatatc
    12421 caagtgattg acacccgagc aaacccagcc ggagcggata aattggacgt aactattccg
    12481 ttgcataccg gtgggttaaa cagtgaatgg ttgctgaaat ctgatcttat tgtaattagc
    12541 ccaggtttag ccgttgccac acctgaaatt cagcaagcga ttcaagctgg tgttgaaata
    12601 gtcggtgatg ttgaactgtt ttgtcgggaa gcgaaagctc cgattattgc gatcaccggt
    12661 tcaaacggca aaagtaccgt aacgacttta actaccgaaa tggcgaagca agcggggatt
    12721 aaagtgggaa tgggtggcaa catcggtgtg ccggtattaa gtttgctgga gggcgattat
    12781 gacctttttg tgctggagct atccagcttc cagcttgaga caacttattc actgaaagca
    12841 aaagctgcca ctgttttaaa tattagcgaa gatcatatgg atcgctacga ttcgattgcc
    12901 gactatcgcc aagcgaaatt gcggatttac gataatgcgg aaaatatcat cgtaaacggt
    12961 gaagatgccc aaacttaccc gatacaagcg gtcaaaaaag tgattcgttt tgcagaacaa
    13021 aatgcggaat atagcctacg caatcagatg ctttattcag gcgatgatgc aattatccaa
    13081 actaaacaga tgctgattag cggccgtcat aatgagatga atgcgttagc ggcgatggca
    13141 ttagcagaag cggcgaatgt tcctcgtgaa ggcattgtga aagctttgca aatttatggt
    13201 ggtttgccac accgtttcca agcggtggca accaatgatg gcgtgcgttg ggtcaatgat
    13261 tccaaagcga ccaatgtggg tagcacggta gcggcattaa acggcttgaa tattgccggt
    13321 acactttatt tacttttagg tggtgacggc aaggctgcgg atttttccga actcaaacca
    13381 ttaattaata agccaaatat tgtctgctat tgtttcgggc aagatggagc ggcattggca
    13441 gaattaagcg aacaaagtgt gttggttgaa acgatgcagc aagcaattga agcaatccgc
    13501 ccacaactga aaaaaggcga tatggtactg ctttctccgg cttgtgccag tttagatcag
    13561 tttaaaaact ttgagcaacg tggcgaggta tttatggcat tagcacaagg acagcacgca
    13621 taatgttaga aagaattaag tcggaatggg ataaatgggt cagattaacc ccttctaatt
    13681 cactttatga cagaactcta atttggctat ttttaggcct gctaattatc ggttttgtga
    13741 tggtaacatc tgcttcactc ccagttagca caaggttgaa taacgatcca ttttattttg
    13801 cgattcgaga cgggctgtat attattgctt caattatctt ttgttatgtt tttgtacaaa
    13861 tcccaattga aaaatgggaa aagcataact tggcactgtt ttttatttca atcggttttt
    13921 taatcgccgt actcattttc ggccgctcaa ttaatggtgc agtgcgttgg attccgttgg
    13981 gtattctcaa ctttcagccg gcagaattag ccaaattagc ggtcatttgc tattttgcca
    14041 gtttctatgt acgtaaatat gatgaaattc gtaaagaaaa agccagtttc tggcgaccgg
    14101 cagtgatttt attcttattc ggcttcttgc tgattttgca gccggattta ggtagtacct
    14161 ttgtattatt tgttctcact ttctcaatgc ttttcattgt gggggcaaaa attatgcaat
    14221 ttatgttttt aggcgtggtg ggaacggtgt tatttgcggt gttgatttta acctcggaat
    14281 accgtttaaa acgtgttacc tcctttatgg atccgtttgc tgatgcttat ggcgacggtt
    14341 tccagctctc gaactcacaa atggcatttg gacaaggtga attttgggga caaggtttag
    14401 gtaattcggt acaaaagcta gaatatttgc cagaggcaca tactgacttt gtaatggcgg
    14461 ttattggtga agaatttggt ttctttggta ttgcttgcat cgtactttta cttattctat
    14521 taacggtgag agccttaaaa atcagtaaag aatctttggt gctggaagag cgttttaaag
    14581 gctatatggc atttgggatt gcgatttggg ttttcctaca aggcttcgta aacttagggg
    14641 tggcatcagg tttgctgcca acgaagggct taaccttccc attagtgagt tatggtggtt
    14701 cgagtttggt aattatgtcg attgcgattg cagttttgct acgaattgac cacgaaaacc
    14761 gtgccgagcg aatcgggcac gcaaaaatta aaaccatcta gccgagcggt ctgcaacgtt
    14821 acaatttgca aaattttaca aaaatgagac cgcttgtatt agctggaaag cataaaaatt
    14881 cagtaaaata gcacgtttta gaataaaaaa gagttgaaaa tggcgaagaa attattagta
    14941 atggcaggtg gaacaggggg gcacgttttc cctgcaattg ccgtagctcg agagctacaa
    15001 aaacaaggct ggcaaatccg ctggctgggg acgaaagacc gaatggaagc cactcttgtg
    15061 ccgaaacacg gtattgagat tgattttatt gaaatctcag gcttgcgggg taaaggcgtt
    15121 gcagcattgt tgaaagcacc gtttgctatt tttaaagcgg tgatgcaagc ccgcaaaatc
    15181 attaaaaatt atcagcctga tgcggtgttg ggaatgggcg gttatgtgtc cggtccgggc
    15241 ggtattgcgg ctaaattatg tggcgtgccg gtgattttac acgagcaaaa cgcagttgcc
    15301 ggcctaacca atgtgtggct atccaaaatt gcccgcaagg tgttacaggc tttccctact
    15361 gcttttaaag aggccgaagt agtaggtaat cctgtacgtg aagatttatc tgctcttccg
    15421 ctgccgaatg aacgtttcgc caaacgaggc tacccgatta acattttagt aatgggtggc
    15481 agccaagggg caagagtgat caaccaaacc gtgccggaag tggcaaaagt gttgggtaat
    15541 aatgtgttta tcagccacca agtcggtaaa ggtaatttag ccggtatcga agaagtctat
    15601 caacaaaccg gcaatgggat tgcttccgag tttattgatg atatgaaagc cgcgtatgag
    15661 tgggcagatt tggtgatttg tcgttccggt gcgttaacgg tgtgtgaaat tgccgccgta
    15721 ggtctgcccg ctgtgtttgt gccgttccaa cataaagaca ggcaacaatt tttaaacgct
    15781 aactatttgg cggcagatgg agcagcagtg attatcgaac agagcgattt cactccaaag
    15841 gcattacagc aagccttaga acccttaatt gccaatcgcc aactcttatt ggatatgtca
    15901 atgcgagcca gagcaaaatc caccccaatg gcagcaaaac gtgtagcgga agtgattatt
    15961 caagaagcga attaacttac tacaagcggt cgtttttggt aaaaattttg caaaatgtaa
    16021 ccgcttgcga atagattaaa aggacaataa atgaaaaatt tccaagataa agtcaaaaaa
    16081 ttagtgcctg aaatgcgtcg tgtcagccaa attcatttta tcgggattgg cggagccggt
    16141 atgagcggca ttgcggaagt gttattaaac gagggatacc aaatttcagg ttcggatatt
    16201 gcagacagag cggttacaca acgtctatcc gcagccggag cgaaagtctt tatcggacac
    16261 caagcagaaa atattgctgg ggcgagtgtg gtggtggttt ctactgcgat tgatgaaacc
    16321 aaccctgaaa ttattgccgc tcgagaagct cgaattccgg tgattcgccg agcagaaatg
    16381 cttgccgaaa ttatgcgttt tcgccacggc attgcgattg caggcacaca cggtaaaacc
    16441 actacaaccg caatgatttc aatgatctac accgaagcaa aattagatcc gactttcgtg
    16501 aatggcggtt tggtaaaatc taccggcaaa aatgctcatt tgggggcgag ccgttattta
    16561 attgccgaag ccgatgagag tgatgcttct ttcttgcact tgcagccaat ggtgtcggta
    16621 gtaaccaaca ttgagcctga ccatatggac acctatggtg gcgattttga gaaaatgaaa
    16681 gagacttacg tacgattttt gcgtaactta cctttctacg gcttagcggt aatgtgtgcc
    16741 gatgatgaaa cggtaatgga aattgctcct cgtgtcggca gacaagtgat tacctatggc
    16801 tttagcgaaa atgcggatta ccgaattgaa gattaccagc aaaccggctt ccaagagcat
    16861 tacaccgtag tttgcccaag cggtgaacga attgatgtgc tgttgaatgt gccgggtatg
    16921 cacaatgcct taaatgcaac cgctgcgtta gcggtggcaa aagaagaagg gattggcaat
    16981 gaggcgattt tagctgcttt agctgatttc caaggggcag gacgccgctt tgaccaatta
    17041 ggttcattta ttcgcccgaa cggcaaaatt atgttagttg atgactacgg ccaccaccca
    17101 actgaagttg atgtaaccat tcaagccgct cgttcaggct gggaaggtaa acgtgttgtg
    17161 atgattttcc aaccgcaccg ctattctcgt acccgtgatt tattcgatga atttgtacaa
    17221 gtactgtcta aagtcgatgc cttgatttta ttggatgtgt atgctgccgg cgaagctccg
    17281 attgtggggg cagacagtaa agccttagcc cgttcaatcc gtaatttagg taaggtcgat
    17341 ccgattttgg tttcagatac cgatcaactt ggcgaggtat tagatcaaat tattcaagac
    17401 ggtgatttaa ttttggcaca aggtgcgggc agtgtaagcc gcatttctcg tggcttggct
    17461 gagagctgga aaaattaaat actctctccc cttgcgggag agagaccgaa aaatacttcg
    17521 ttcagaagta tttttcagag agagggtata tatttaaagg atttcaaatg agtattaaaa
    17581 acgaaaaaat tgccgtctta ttcggtggcg tttcgcaaga gcgtgaagtt tcactgaatt
    17641 ctggtgcagc ggtaacagct gcattaaaaa gtttaggcta taacgtagaa ggcattgata
    17701 ctaaagaatt cccgattgaa aaattaaaag aaaaagggat tcagcgtgta tttaatattt
    17761 tacacggcgg tattggcgaa aatggcgtac tgcaaggtgc gttagagcaa atgggtattc
    17821 cttacaccgg ttgtggcgta atggcatcag cagtgacgct ggataaattc cggactaaat
    17881 tattatggaa tgcagtaggt ttaccaacag cggatatggt ggtggttcag cgtggacaag
    17941 cggtcgattt tgaccaaatt attgcaaaat taggcttacc ggtatttgtg aagtcttcgt
    18001 gtgaaggctc aagtgtgggt gtattcaaag taaaaaccaa agaagaattg gcaccggcaa
    18061 ttcacgaggc attaaagttt gattccattg tgttggtgga agaattttta gccggtaatg
    18121 aatattctgt accggtatta gacggacaag ttctaccggc ggtacaagta attccggacg
    18181 gcgaatttta tgactaccac gcaaaatatg tgtcggataa cacccaatat gtagtaccgg
    18241 cattaaatga cgaacgccaa gcagaggtcg ccaaattagt gaaagcggct tacgatgtgg
    18301 ttggctgtcg aggttggagc cgtattgatg tgatggaaga tggcgaagga aaattccgct
    18361 tggttgaagt aaataccaac ccgggaatga ccagtcacag tattttccca aaatcagcag
    18421 caacagttgg tatttccttt gaaaaattag ttgaacgcgt attggagtta agtgcttaat
    18481 gggcatcttc cgcaagaaga acagcacaaa tgtgcgtttg aatgttctta atccaaaaac
    18541 acctgtttct ccacgtaaat ggctagtatt cattaagcca ttaattgtgt tattatgtac
    18601 actatttgta ttcggtgtgt atagtaattg gcaaaatata ctcgaaagtt gggataaaac
    18661 accgattcgc gcttatgcat taacacataa aacacaattt acaacaaatg cagatattcg
    18721 tgaaactttg tctaaagaac ctgctctaaa aggatatttc ggacaaaata ttcaagaggt
    18781 caaagataag cttttatcta taccttgggt taaagatgtg gctgttcgta aactttatcc
    18841 cgaccgatta agtattactt tgctagaaca taaacccgtt gcaatttgga atgatactaa
    18901 ctttgtctca gaacaaggaa ccgtctttag tttaccgaaa gacagaatcg ataaaaatgg
    18961 acttccatta ctctatggtc cagatacgga aggaaaaagt gtattagagg catggaataa
    19021 aatccgagct gatctaaatg cccgcaactt ggatttaacc tccgtttctg tagataatcg
    19081 aggttcttgg acaattaggc tttctaatca agtagaatta agattaggaa gaggggaatg
    19141 gacttctaaa attgatcgtt ttgtaataat ctttcctgaa attcatatac ctgaaggtaa
    19201 tagattagct tatgttgatt tacgttatcc acatggcgcg gcggttggat ttagtcctat
    19261 aaaaaattaa actcagtgaa cacaaaaaca ttatgacaaa agcagtagaa tcaaaaatta
    19321 tcgttggtct tgacattggg acatcaaagg ttgttgccgt tgttggtgaa gtattacctg
    19381 atggtgtaat taatgttatg ggagctggcg tttgcccttc taaaggagtc gatcgaggtg
    19441 gcgttattga tcttgacgct gccgttaatt ctattcaaag agccattgag caggcggaat
    19501 ctattgccga ttgtcaaatt atgggtgtaa cactggcaat ctcaggtcag catattgttg
    19561 gtttaaatga agcaggatca tcaacattat ctggaggtat tgttacccaa gataatattg
    19621 aaagtgctgt ggatatggca aaggcaatta aattacaaga tggcttagaa acattacaca
    19681 tgattccaca agaatatcac gtggatagat tgcctgcgac taaaaatcca attggcttat
    19741 cgggtatgcg tttacaagtt caagcacact taattgcttg ccatcaagct tggttaaaaa
    19801 acttaaaaaa tgcggttgaa catgctaaat taaaagtcga tcaagttgta ttttcaggtc
    19861 ttgcctctag ctattctgtt ttaactgaag atgaaaaaga gctgggtgtt tgcttaattg
    19921 atattggtgg cggtacgatg gatgtactag tttataccga tggagcatta agatacagta
    19981 aagtcattcc atttgcaggt aataacatta ctgattattt ggctcgtgta tttacgacat
    20041 ctcgccctga agctgaaagc cttaaagtag gttatggtag cgcaatttcg cctccaaccc
    20101 ataattcaga taaaaaaatt gaggtggcag gactaggtgg acggatggca agaaccttta
    20161 cccgagctca ggtggcaacg gttacctcac aatgttataa cgatttgcta aaagttgttg
    20221 aagaggaatt aacccaatta cgccatgaac ttttccaaaa aggaataaaa caagagttaa
    20281 ttgccggtgt agtcattact ggtggtggct cacaaattga agatattgta gaatgtgcta
    20341 aatcaatttt tggttcacaa gttcgtgttg gatatccact caatattact ggcttaaccg
    20401 attatgtgaa taaaccacaa tatgcaacag cattagggct tttacaatat agccactata
    20461 attatactga acaaggtaca agtacagatt ctaatgaaga tatctttgct cctattggtc
    20521 gtggaaccaa gaaaatcatt gacttcttca aatcaaaatt ttaatagtgt taaaataaac
    20581 acgcagggag ataaaaatgt ttgaacctat tattgaacaa acgcaagatg ctatcattaa
    20641 ggtagtgggt gttggtggcg gtggcggtaa tgccgtagac agaatgtctc gctctgccga
    20701 tgatattaaa ggtgttgaat tctttgatgt aaatactgat gctcaagttt taagaaaaag
    20761 aaccacacgc caaactatcc aaattggagc aagtacaact aaaggtttag gtgcaggtgc
    20821 tgatccaatg gtaggaaaac aagctgccga agaagatcgt gaggctatcg ctaatgcatt
    20881 aaaaggtgca aatatgacct ttattgctgt tggtatgggt ggaggtaccg gtaccggagc
    20941 agcccctgtt gttgctcaaa ttgccaaaga gcaaggctca ctaactgtag gcgttgtaac
    21001 aaaacctttc cgcttcgaag ggcctcgccg tatgcgcttt gcagaccaag gcattaaaga
    21061 gctttctcaa tatgttgatt ctcttattat aattcctaat gataaattac gtggtttagg
    21121 taagcaaaca acagcagtag atgcctttgc cgcagcaaat gatgttttaa gtaactgtgt
    21181 gcttggtatt accaatatga ttaccagttc gggcggttct accggtgcag atattaacgt
    21241 ggacttcgcg gatgttcgta cagtaatgtc tggtaaggga cacgctatga ttggtacagg
    21301 ttttgctgaa ggtgaagttg gtgaaggacg agcggaaaaa gcaatgaatg atgccatttc
    21361 tagtccatta cttgaaaatg tggatatttc aggtgcaagt ggtatgctca tcaacattag
    21421 tgctgggaca gatttcttat tagaagaagt ttatgctatg atggacttaa tttatggctt
    21481 tgcaacagaa gatgccgcaa ttgtatttgg ttgtaactat taccctgaaa tggatggaaa
    21541 agtgagtgtc actcttgtcg caacaggaat aggccaacct gaggaagctc tacatatgcc
    21601 acataaggct cagccagtat atgcacagca aggaaatcat gttcaagcta cacagcctac
    21661 tcagccaaac catgcggtac aacaaccaaa ctttactcaa ccgtcaagtt atggtcagcc
    21721 aaatcaattt agtggtcaac cacaaccact acaacaacct gtggctccaa aaccacaatc
    21781 ggttgataca gcacaaattt ttaacccaaa ttcaattccg ggttttatga gaaatagtca
    21841 ataacttcca ctcatttcgg aagtaaggac aaaatatgac taaacaaaga acattaaaac
    21901 aagcagcaaa agtaacaggt attggcttac atagcggcaa aaaagtaacc ttaacgttac
    21961 gccctgcccc agctaataca ggagttattt atgcccgtac cgatttagag cctgtcgttt
    22021 atttccctgc aagcgcagac tctattcgtg atacacaatt atgcacatgt atggtaaatg
    22081 atgatggtgt tcgtatttca acagtagaac atttaaacgc agcaatgtca gcattaggct
    22141 tagataatgt tattgttgaa gtagatgcac ctgaaattcc gattatggac ggtagttcaa
    22201 gcccatttat ctatctttta ttagatgccg gcatcgaaga acaagatgca ccgaagaaat
    22261 ttattcgcat taaagaaaca gtacgcgttg aagaaggcga taaatgggcc gaattaaaac
    22321 catacaataa aggttttaaa ttgaacttca ctattgactt tgagcaccca ttaatcccca
    22381 aaaatgtagg gagctattcc attgattttt ctgctgagaa ctttattcag caactaagtc
    22441 gagcgagaac ctttacattt atgaaggatg tagaatactt gcaatctatt ggtcttgcat
    22501 taggtggaag ccttgataat gctattgtat tagatgatta ccgaattcta aatgaagacg
    22561 gtttacgatt taaagatgaa ctggttcgcc ataaaatgct ggattcgata ggtgacttat
    22621 atatgtgtgg ttataatatc ctaggtgaat ttagtgcata taaatcaggt catggcgtta
    22681 ataataaatt attaagagct gtattggaaa ataaaaacgc ttgggagttt gttacctttg
    22741 aagataaagc agaagtccca caaggttacc aagtacaaca agaaattttt atttagtcta
    22801 aatggcttaa aagacgaaca gaaatgttcg tcttttattt tgcaaatttt ttctaatatt
    22861 taaccgcttg caacccgcct cattagcgat tttttcgccc ttatctattt actgtttaaa
    22921 aaaacagttg tactatatac ccatacagtt aatcttgtgt ggtgtattat gcttactcaa
    22981 cttactatta ataattttgc gattgttcgc catcttattc ttgaattaaa tgaaggtatg
    23041 tctgttatta ccggtgaaac cggtgccggg aaatcaatcg ctattgatgc cttagggcta
    23101 tgcttgggtt atcgttctga aagtgggatg attagaaacg gttcggacaa agcagatata
    23161 agtgcaacct ttactatgca gccacatagc cctgcttatt tatggctaca agagcatgaa
    23221 ctgcttgatg aagataatcc tcaagagtgt atcttacgcc gtatgattaa tattgatgga
    23281 cgctcaaaag cctttgtaaa taaccgatca ttacctgttt cacaacttcg agagttgggg
    23341 caatatctta ttcatttaaa tgggcaacac gcaccacaat tactcctaaa aaacgaatat
    23401 caacttgaaa tagtcgatca ttatgccacg ttacagcctc tattgatgaa gatggcaaag
    23461 caatatggga attggaaaga actgaataag caggtaaaaa atttccaaaa acagtgccaa
    23521 gaaaatgaag ctcgcaaaca gctattagaa tatcaagttg aggaattaga tgaatttgca
    23581 attaaagcaa acgaatttga agaaatggaa gagaaataca atatcttgtc ttcttccgag
    23641 gagcttactg agctttcaga tgaaatcaca cgcttattaa gtgatgatga aatcaatgca
    23701 aacagtctga tttataaagc gttacgcaat gcagaaaact tggctgaggt tgatagccaa
    23761 tatcagggca ttttagatat gcttaatgag gccctgattc agattcaaga agcaagctcc
    23821 gaagtggctc aattagccag taaaattgaa caagatccgg aattactaca ggagctggat
    23881 aatagaattg cacaaactat atcgttagca cgcaaacacc atattcaacc gaatgaatta
    23941 tggcaatatc acgcgacatt aaaagcagaa ctacaggaat tactggattt tgaagataat
    24001 gaagaacaac tcattcaaaa tgaaaaacaa gcttaccaag agtgtataac attagcagaa
    24061 gaaatttacc aaaaacgtct agatgccaca cataagctct ctgaacaagt aacaaaacaa
    24121 attaaacact tagcaatgga aaacggtgag ttctttattc atatagaaca taatcttgaa
    24181 aaaatgtctg caaatggtgc tgactatgtc gagtttaatt tacgcagcaa tttaggacaa
    24241 caaccccaac cactggcaaa aattgcttct ggtggtgagc tatctcgcat ttctctggca
    24301 gtacaagtgc ttaccgcaaa taaactttct acgccaacta ttatttttga tgaagttgat
    24361 gttgggatta gtggctctgc tgccactaca gtcggaaagc tactgcgtaa gctaggcgaa
    24421 aaatgccaag tattatgtgt aacccattta cctcaagtgg caagttacgg caaccagcag
    24481 tttaatgtac aaaaatatgt agaaaataat caaactgaaa cgcaaatgac attactcaca
    24541 gaagcagagc gtattcacgc cttggctcga ctattaggcg gaagcgaaat caccgaaacg
    24601 gttttagcta atgcaaaaga aatgctaaat ttagcgaaaa ataacgaata gccaaaaaga
    24661 aaaatcgcat caatgaatat tgatgcgatt atgaatttgg tggaggtaaa cgggatcgaa
    24721 ccgatgacct cttgcatgcc atgcaagcgc tctcccaact gagctatacc cccttaatac
    24781 aagcggaata atatgctttc cgcttgaaga tgtcaatggc tttaatcaag caaggtgttg
    24841 attgattaaa aactagctat tcgcctgaat aaactcaatc gctttttgta agcgagctaa
    24901 ggttctttct ttaccgacta atttggcggt gatatccatt gacggcgatt gcccacttcc
    24961 tgttaccgct aaacggaacg gcataccgac tttgcccata ccaatttcca gctcggcagc
    25021 ggtttggttc attgcctcgt ggatattttc caccgtccag tcattgcaag cggtcaattt
    25081 ttccaataat tttgcaagtg gagcaacggc ttcggctttg aagtttttag cagcagcttt
    25141 ttcgtcgtaa gccttaaatt cttgatagaa atagcggctg ctttcggcaa gctcttttaa
    25201 ggttttgcaa cgttcgccca gtacagggat aatttcttcc aattttggac cgcttgtgaa
    25261 atcaatgcct tgagtttgca tatgccattc aagatgtttt gccacataac ttggggcaag
    25321 actgcggata tagtgttggt tcaaccattg taatttttca gtgttaaatg cacttgccga
    25381 tttactgact gaatgaatgt cgaacagctc gatcatttcg tcacgagaga aaatctcttg
    25441 gtcgccgtgt ccccagccta aacgcacaag gtagttaatt aaggcttccg gtagatagcc
    25501 gtcatcacga tattgcatta cgctcaccgc accgtggcgt ttggagagtt tttgcccgtc
    25561 atcgccgttg atcattgaaa cgtgggcgta ggttgggatt ggtgctccta atgctttcaa
    25621 aatgttgatt tggcgtggtg tattgttgat atggtcttca ccccgcacaa cgtgagtaat
    25681 gcccatatcc cagtcgtcca ccaccacaca gaaattgtag gtcggcgagc cgtcagtacg
    25741 gcgaataatc aagtcatcta attcgctatt ggcgatttca attcgcccac gcaccgcatc
    25801 gtcaaatact accgagcctt cggtcgggtt tttgaaacgc acaacatgtg gttggctcgg
    25861 gtcgttttgc ggattgtgta agcagtgctg atcgtatttc gctttctctt tatttgcttc
    25921 ttgctctgca cgtacttcgt ctaaacgttc tttcgagcag tagcaacggt atgccgtgcc
    25981 ggcttctaac atttggtcga tcacttggtt atagcgatcg aaacgcttgg tttgaaagta
    26041 tgggccgtgt tcccacgcca aatccagcca ttccataccc tctaaaatag cggcggttgc
    26101 ctcaggggtt gagcgttcaa gatcggtatc ttcaatacgt aacacaaatt caccatcatt
    26161 atgcttagca tataaccaag agtagagcgc ggtcctcgcc ccacctacgt gcaagtagcc
    26221 agttgggcta ggtgcaaaac gggtacggac ttttacattc ggatctaagg ggaaaagggt
    26281 ttcaattttc attttatatt gcctaattga tgattcttaa gaaaaacttg tctattttac
    26341 tacgcttgag ggtgaatcat agtaaaaaat taaatttgcg gggtaaaaaa tcagcaaacg
    26401 gggtaaaaag aacaaaaagg gtttgacgaa acagcaaaaa tctctataat tcacttccac
    26461 aacagcgggc gattagctca gttgggagag cacctccctt acaaggaggg ggtcactggt
    26521 tcgagaccgg tatcgcccac cacttcaact taagtgtttc gttgttgtat cacaatctaa
    26581 ttttgaaaac gggcgattag ctcagttggg agagcacctc ccttacaagg agggggtcac
    26641 tggttcgaga ccggtatcgc ccaccacttc aacttaagtg tttcgttttc aaattccctt
    26701 tgattttaag tctcaagtgg gcgattagct cagttgggag agcacctccc ttacaaggag
    26761 ggggtcactg gttcgagacc ggtatcgccc accacttaag actaaaatca taaacttcaa
    26821 atggcgattt ttcgtatctg aagggcgatt agctcagttg ggagagcacc tcccttacaa
    26881 ggagggggtc actggttcga gaccggtatc gcccaccatc tatttagtat caaagcctaa
    26941 aacttatatc ataatctaat aaccccttta aagtcataac taaaaaggga aaataaattc
    27001 agatggcctg ttgcatctgc ataaatgcct ttctacgtgc agaaattaat ctttttctat
    27061 ctttaatttg cttaatttga cgcaggcgta atttccttgt cagtagggat ttctttttct
    27121 tcaattttct cataagaaga attctcctgt tttatttgac catctggtaa attttcttgt
    27181 tcttgcatct tttgctcttc aactcgttga taattaataa tactaccata ataacgccgt
    27241 atattttcaa catactgtaa tgcttcatat cctcgagcat agccgtattt tagattagca
    27301 taataacgtt tttccgcaag caatggcaga ttctttttaa catcaagcca attatccgga
    27361 tcaccaccaa gttgttttgt taatcgacga agatccaaca agtgccccaa tcccatatta
    27421 tacgctgcta ggctatacca aattctatct gcttgaggaa tagtttccgg catttgtctc
    27481 attagcatat gtaaatattc agatcccgct ttgatacttt gtgcagggtt agtcctatca
    27541 gaaattttca ttctatctgc cgtatctttt gtcagcatca taattcccct cactccggtt
    27601 ggagaagttg cattaggatc ccaatgagac tcctgatagg cgatagccgc cagcatttgc
    27661 cattctaatt cacctttatg tgcccgaaaa aggggttcat atttaggtaa aatagtttta
    27721 attgcattca aatagctctg aatatcaaca taatcaaact tagctaaatg attaaaatat
    27781 ttctcttcta ttcttgatat cagcccagtt tccatagaat aagacataaa atccagcagc
    27841 acagattgca gttcactata agaactattt gctaaatacc ataacactgg gttttcatca
    27901 gttaaatcaa accctacggc taaattagga ttaatatgct gtgcagcaga aatatcaacc
    27961 gacattgcaa ttgtatgtga aatttcacct tgtgcgactt ttaacaatag ctcttcttgt
    28021 gtaaatttat ccgagatctg ccattttagt tccggattat ccaccttaag ctgatttaat
    28081 attggaatta ccgcagaacc ggctggaata atcacatttt cccgcaaatc ggaaagtcga
    28141 tatggtctag cacttccctt tttataaaca agctgccaag aagccgaata ataggaagga
    28201 cctatctgaa attcatcgtt taattcagaa tggtaaagca gcccagcggc agcaatatca
    28261 acatcattat ttcttaaggc ctcaaacaat ttctcgctac tatcataagt tttaatatca
    28321 agattgacct ttaaatattg agcaaaggct gttgctaaat catattcaat gccacttttt
    28381 ccttcaggac caacaaagta agaaagtgga tggttgatca ttccaacctt taacgttttg
    28441 ctttgctgaa tttgtgtata atgatttgct tctgaatgaa tgattttttg ccaaggaaaa
    28501 atcatatccc aagcccacag taacaatgct acggcaataa aaaggcgagc aattaatcct
    28561 ttcaatttaa aatcctcatt atttcaagct aagcattaag cctatctgaa
//
LOCUS       DANLXK010000017        27540 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.017, whole genome shotgun sequence.
ACCESSION   DANLXK010000017 DANLXK010000000
VERSION     DANLXK010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27540
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(88..804)
                     /gene="rph"
                     /locus_tag="PXD88_000634"
     CDS             complement(88..804)
                     /gene="rph"
                     /locus_tag="PXD88_000634"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL6280236.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1085..1948
                     /locus_tag="PXD88_000635"
     CDS             1085..1948
                     /locus_tag="PXD88_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL6280237.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            1957..2847
                     /locus_tag="PXD88_000636"
     CDS             1957..2847
                     /locus_tag="PXD88_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL6280238.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2879..3139)
                     /locus_tag="PXD88_000637"
     CDS             complement(2879..3139)
                     /locus_tag="PXD88_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL6280239.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3369..3788
                     /gene="rbsD"
                     /locus_tag="PXD88_000638"
     CDS             3369..3788
                     /gene="rbsD"
                     /locus_tag="PXD88_000638"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL6280240.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3798..5294
                     /gene="rbsA"
                     /locus_tag="PXD88_000639"
     CDS             3798..5294
                     /gene="rbsA"
                     /locus_tag="PXD88_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL6280241.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5304..6272
                     /gene="rbsC"
                     /locus_tag="PXD88_000640"
     CDS             5304..6272
                     /gene="rbsC"
                     /locus_tag="PXD88_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL6280242.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6295..7173
                     /gene="rbsB"
                     /locus_tag="PXD88_000641"
     CDS             6295..7173
                     /gene="rbsB"
                     /locus_tag="PXD88_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL6280243.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7294..8223
                     /gene="rbsK"
                     /locus_tag="PXD88_000642"
     CDS             7294..8223
                     /gene="rbsK"
                     /locus_tag="PXD88_000642"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL6280244.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8237..9247
                     /locus_tag="PXD88_000643"
     CDS             8237..9247
                     /locus_tag="PXD88_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6280245.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9283..9912)
                     /locus_tag="PXD88_000644"
     CDS             complement(9283..9912)
                     /locus_tag="PXD88_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6280246.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10110..12269
                     /gene="rlmKL"
                     /locus_tag="PXD88_000645"
     CDS             10110..12269
                     /gene="rlmKL"
                     /locus_tag="PXD88_000645"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL6280247.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12446..12925
                     /gene="trmL"
                     /locus_tag="PXD88_000646"
     CDS             12446..12925
                     /gene="trmL"
                     /locus_tag="PXD88_000646"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL6280248.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(13019..13837)
                     /locus_tag="PXD88_000647"
     CDS             complement(13019..13837)
                     /locus_tag="PXD88_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL6280249.1"
                     /translation="MQEIKLFEQKSVRSHYDEEKDKWYFSIIDVIAILTESLDPSAYW
                     RKLKQRLKAEGNETVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQ
                     WLAKVGYERLQEINDPSQSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSG
                     VEQPQDFAFLTNVIHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQ
                     IAESMQAVGVDENAQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
     gene            14080..14874
                     /locus_tag="PXD88_000648"
     CDS             14080..14874
                     /locus_tag="PXD88_000648"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL6280250.1"
                     /translation="MRLIPLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGT
                     PEKTYKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLE
                     NINILNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIK
                     TLTEDTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEG
                     AVNHLWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            14955..16097
                     /gene="nagA"
                     /locus_tag="PXD88_000649"
     CDS             14955..16097
                     /gene="nagA"
                     /locus_tag="PXD88_000649"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL6280251.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            16179..16493
                     /locus_tag="PXD88_000650"
     CDS             16179..16493
                     /locus_tag="PXD88_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL6280252.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(16572..17762)
                     /locus_tag="PXD88_000651"
     CDS             complement(16572..17762)
                     /locus_tag="PXD88_000651"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL6280253.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(18125..19429)
                     /locus_tag="PXD88_000652"
     CDS             complement(18125..19429)
                     /locus_tag="PXD88_000652"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL6280254.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(19439..21265)
                     /gene="oadA"
                     /locus_tag="PXD88_000653"
     CDS             complement(19439..21265)
                     /gene="oadA"
                     /locus_tag="PXD88_000653"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL6280255.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(21305..21559)
                     /locus_tag="PXD88_000654"
     CDS             complement(21305..21559)
                     /locus_tag="PXD88_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL6280256.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(21749..22936)
                     /locus_tag="PXD88_000655"
     CDS             complement(21749..22936)
                     /locus_tag="PXD88_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL6280257.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(23211..23948)
                     /gene="pxpA"
                     /locus_tag="PXD88_000656"
     CDS             complement(23211..23948)
                     /gene="pxpA"
                     /locus_tag="PXD88_000656"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL6280258.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(23935..24864)
                     /locus_tag="PXD88_000657"
     CDS             complement(23935..24864)
                     /locus_tag="PXD88_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDL6280259.1"
                     /translation="MIYIEIIQGFAHIQDLGRYGYRHLGVSHGGAMDSLALQAGNLLL
                     KNANNAPAIELTLGGMRITFDCDTPFCLTGALVEAELDGTPVFSYYRYTANARQTLTI
                     KRIVLGNYAYLCVAGGFLVPQVLGSASTALKAQFGGFQGRMLKAGDNIATGRRDSRLS
                     LMSIEPIDFTSRIRATASSEYEAFTADSRERFWQQGWQLQNNSNRMGYRFAEKALELT
                     ASLEMLSYAAPSGTVQVPPDGQPIVLMADAQTTGGYPKIACIIQADLGRLAQNPFGST
                     VQFEQVSREQAVEIYQKDQNYLETIRRKANESR"
     gene            complement(24861..25508)
                     /gene="pxpB"
                     /locus_tag="PXD88_000658"
     CDS             complement(24861..25508)
                     /gene="pxpB"
                     /locus_tag="PXD88_000658"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL6280260.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(25602..26426)
                     /locus_tag="PXD88_000659"
     CDS             complement(25602..26426)
                     /locus_tag="PXD88_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL6280261.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(26560..27384)
                     /locus_tag="PXD88_000660"
     CDS             complement(26560..27384)
                     /locus_tag="PXD88_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280262.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         7768 a         5730 c         6273 g         7769 t
ORIGIN      
        1 aaaaaaatct acatctgaat cagaacggtt attctgtttt gtcagatgta gattttattt
       61 aaaaagaaaa tcaaaaagag aagtgaatta ttcagctaac gctttacgtt gagcttcaac
      121 tagctggcta atgccttgct tcgctaaatc tagcaatgtc agtaattctt ggtgcgagaa
      181 cggttcgcct tctgccgtgc cttgtacttc cactaaacga ccatcttcga ccatcaccac
      241 gttcatatca gtttcagcgt tggaatcttc cagatattct aaatcgcaca ccgcttcgcc
      301 tgctacaata ccgacagaaa ttgctgcgac taaacctttc attgggttag tttttagtgt
      361 tccattagct actaacttat tcattgcatc gtacaatgct acgcacgcac cggtaattga
      421 ggcggtgcga gtgcctccat cggcttgaat aacatcacaa tctacggtaa cggtacgttc
      481 gcctaaggct tttaaatcta ccaccgcacg cagagaacgg gcaatcaagc gttggatttc
      541 cattgtgcgt ccgccttgtt tgccttttgc cgcttcacgc tgagtgcgag agtgggtggc
      601 tcgtggcaac ataccatatt ctgcggtaac ccaaccttgt tgctgacctt ttaaaaagcg
      661 tggcacgctt tcttctaccg tagcgttaca caatactttg gtttcgccaa actcaattaa
      721 taccgagcct tcggcatagc gagtgtagtt acgggtaatt ttaatttctc taacttggtt
      781 gtttgctcga ttatttggac gcattttctt ttccttttgc taaaattttt accattttag
      841 caaagaacac agtaaaatgt gatttttctt tagcaaagaa tttacatagc cctcgcccct
      901 tgtgggagag ggacggattt ttcttcgttc agaagaaaaa tcagggagag gggtaagcgg
      961 ttatttttat ctcaaatttt acaaattcct ccctctctct gaaaaatatt tctgaacgaa
     1021 atatttttcg gtctctctcc ctcaagggga gagagcttta cttataaaaa cacaaggaat
     1081 accaatgatt tatagtatga cagcatttgc ccatttagaa atgaaaaaag agtggggcaa
     1141 tgcggtgtgg gaaattcgct cggtaaatca acgcttttta gaaacctatt ttcgtttgcc
     1201 ggagcagttt cgcaacctag aaatgacctt gcgtgagcgt ttacgttctg cactgacacg
     1261 aggcaaagta gagtgtagct tacgcattga tttaagcaaa acccaaaaca gtgaaattgc
     1321 gttaaacaaa gaatatgccg cacaggtggt tcaatcatta aaatggttaa aagaaaccgc
     1381 aaatgaaggc gaaatcaacc ttgttgatgt gctacgtttc ccgggcgtgg tggataatga
     1441 aagccaagat ttagaccaaa ttgctcaaga tttattagcc ggctttgaac aaattctggc
     1501 agattttatc gcaatgcgag ccagagaggg cgagaacgtg caagccctga tcttacaacg
     1561 tttagaagca atttcagttg aggctgcaaa ggtacaagcc caaatgccgg aaattctgca
     1621 atggcagaaa gatcgtttac aacaacggtt cgatgaactg aatttacagc ttgatccaca
     1681 acgcttagaa caagaaatgg tgttacttgc ccaacgtgtt gatgtggcgg aggaattaga
     1741 ccgcttgcaa ttacacgtta aagaaaccac caatatcctg aaaaaaggcg gtgcggttgg
     1801 gcgtaaactg gattttatga tgcaagaact aaaccgtgaa tccaacacgc tcgcctcaaa
     1861 atcgattaat gcggacgtga ccaattcggc ggtggagctg aaagtgttga tcgaacagat
     1921 gcgtgaacaa attcagaatt tagaatagga cagattatgg caatgaattt caagcaagtg
     1981 agccagagct atccaaatct ctgcgtgccg ctttctcagt attgtttaat tgaaatcgca
     2041 ggggtagatg ctgagaaata tcttcaaggg caattaacct gcgatgtggc aaaaatttcg
     2101 gtgggcgaac atacgctaac cagccattgt gatccgaaag gcaaaatgag tgcgttactg
     2161 cgtttgtatc gtgcagaaaa tgagaaattt atggcgatca ttcaccgcag cttattgcct
     2221 gaagccctga cgcaacttaa aaaatatgcg gttttttcaa aagtgacctt cacggaatta
     2281 gacaccccac tttatggtat ggcaggtgaa gcagcatttg caaaattaag cgaaaatatg
     2341 accgctttgc gtttaaccac aggacagcct cgggccattg tttggggcga agagcttgaa
     2401 acgactgccg atgaacagct ctggacatta atggatattc aagacggcat tcctgttctc
     2461 ttgcaacaaa accagtttga gctgattcca caggcaacca atttacaggc acttgaatct
     2521 gcgatttcat tcaccaaagg ttgctacatc gggcaagaaa cggtagcgag agcgaaatat
     2581 cgtggggcga ataaacgtgc tttatttacc cttgccggca actttgaaag cgaaatcagc
     2641 ttaccggaag ttgcttctgc gattgaaatg caactgggcg aaaattggcg agcaaccggc
     2701 actgtgttga ccagtgcgac tgatgaaaat accctgtggg tgcaagtggt gctgaataaa
     2761 gatgttgaac ctaacaccaa gtttagagcc aatggtgtag cgttggaaat ggtcgagtta
     2821 ccttatagtt tggcagaaaa tgagtaaaac gaacggtcat cagggtatga ccgttttttt
     2881 atatctgatc agggtgatga atcatcacaa aacgttccca caactgctct tcggtttcga
     2941 tattatcagg atctttgata atgcagttgg taatcgggca aactttctgg caagtcggct
     3001 tttcataatg cccgacacat tcggtacata acaccggatc gatgatataa atatcatcgc
     3061 ccaccgaaat cgcctcgttc gggcattccg gcaagcacat atcacagttg gtacatttgt
     3121 gggtaattaa taaagccata gtttatattg agaaaataaa aattaaacaa gcggtcgatt
     3181 ttgcaaaaaa atttgcaaat cttaccgctt gtcactaaat gctacctatt ataaagcaaa
     3241 ataatttgaa ctacttcaca tttttgcaat ttggttgttt atccgattaa gaaaattttt
     3301 tatgatgcca tcgaaacgtt tcgatggagt attttccaac gtgatggagc gaaaataaag
     3361 gggttagtat gaaaaaaacg ctaaatctaa atgcacaact ttcgcacagt attgcgacac
     3421 tcgggcatac cgatagttta acggtttgcg atgccggttt gccgattcca aacacaatag
     3481 agcggatcga tttggcttta accgccggtg tgccaagttt tttacaaaca tttgatgtag
     3541 tagttagtga attatttgtt gaacgagtgc tacttgctga agaaattaaa cataaaaatc
     3601 cgcaagtgtt agcagctctt ttggagcgtt taacccaatt agaacaaact caacagaata
     3661 aaattcaaat tgattatgtg aaccacgaaa tctttaaaga gcagacacat tacagtaaag
     3721 ctgttgtgcg ttcgggtgag tgttcaccgt atgccaatat tattttatat tcgggcgtgc
     3781 cgttttaggg tggaatgatg gaaaccttat taaaaatgag cgggatagat aaagaatttc
     3841 ccggcgtgaa agccttgagc aatgcgtgct tatctgttta cggtgggcga gtaatggcat
     3901 taatgggcga aaatggggca ggtaaatcca ccttgatgaa agtattgacg gggatttata
     3961 gcaaagatgc cggctctatt agctatttag gcaaagaagt tacctttaaa ggcccgaaag
     4021 attcacaaga agccggtatt agcattattc accaagagct gaatttagtc ggtaatttaa
     4081 ccattgctga aaatattttt ttgggccgtg agtccaaaac cgcttgggga gctattgatt
     4141 ggaaaaaaat gtatgccgag gcggataaac tgcttgcccg acttggggta aaacacagta
     4201 gccatcagct ttgtgcggag ttatccattg gcgagcagca aatggtggaa attgcgaaag
     4261 ccctgagttt tgagtctcaa gtaattatta tggacgaacc gaccgatgct ttaaccgata
     4321 cagaaacagc atcgttgttt aaagttattc gagagttaaa agcggaaaat cgaggcattg
     4381 tttatatttc ccatcgttta aaagagattt ttgaaatttg tgatgatgtg acggtgctaa
     4441 gagacgggca atttatcggc gagcgagtaa ttgccgatat tgatgaagat cagttaattg
     4501 aaatgatggt tggtcgccgt ttggaagagc aatatccgca tttacaccaa gagcgtggcg
     4561 agttattact tgaagtgaag aatttaagtg gaagtggggt gaataatgtg tcattccaat
     4621 tacacaaagg tgaaattgtg ggtatttccg gcttaatggg ggcagggcgt acagaattaa
     4681 tgaaggtgct ttatggtgca ttgccgaaaa cagccggctc gatagagtta aatggaaaag
     4741 cgatttccaa ccattgtccg caagatgggt tgaataacgg cattgtgtat atttcagaag
     4801 atcgtaaagg cgatggtctg attttgggaa tgtcggtaaa agaaaatatg tctttgacct
     4861 ctctcgatca tttctccaaa gccggcagta ttcgccacga tgcagaaaaa ttggcggtcg
     4921 atgattttat tgagatgttt aacattaaaa ccccaagtcg ggagcaacaa atcgggctgc
     4981 tttccggtgg taatcagcaa aaagtggcga tcgctaaagg gttgatgacc cgcccgaatg
     5041 tgctgatttt agacgagccg acacggggtg ttgatgtggg ggcgaaaaaa gagatctatc
     5101 aattaattaa tgaatttaaa aaagatgggc ttagtatttt gatggtttcg tccgatatgc
     5161 cggaagtgtt gggaatgagc gaccgcattt tagtgatgca cgaagggcaa atcagtgcag
     5221 aattttcacg agcagaagcg acacaagaaa agctactggc agcagctatt ggcaaaagta
     5281 caggattaaa ttaaggtgtg tttatggcaa ctcaaacaaa gcagtttcaa cttggcagat
     5341 ttttaatcga gcaacgttct tttgtagcgt tatttatttt aattgtcagt gtttcaatga
     5401 ttaaccctga ttttttcagc gtggataata ttttaaatat tctacgccaa acctcggtga
     5461 atgcgattat tgcggtcgga atgacctttg tgattttaat tgcaggcatt gatttatcgg
     5521 tcggttcggt tttagcctta accggtgcgg ttgcagcgac cttagtcggt tctgaattgc
     5581 cgattttgtt ggtgattccg ctggttttat tattagggac ggcatttggt ggtattagtg
     5641 gggcgattgt tgctaaaggt aaagtgcagg catttattgc gactttggtc acaatgacct
     5701 tattgcgtgg gattacgatg gtttataccg atggcagacc gattagcacc ggcttttctg
     5761 accaagcaga cgcctttgcg tttattggga caggctattt atttggtatt cctgtgccga
     5821 tttggattat ggcggtagtg tttgggttag cttggtatat tttgaaacac accccgattg
     5881 ggcgttacat ttacgcttta ggtggcaacg aatcggcaac ccagctttca ggcatcaatg
     5941 tgaataaaat taagatcttc gtatttgccg tgagtggttt tttatctgct cttgccggct
     6001 taattgtgac ttcacgtctc tcttctgctc agccaacggc aggtgtgtcc tatgagttag
     6061 acgcaattgc agcggtagtt gttggtggaa ccagtctaat gggcggtaaa gggcgtgtaa
     6121 tgggaacgct tgtcggggca ttaattatcg gtttcttaaa caatgccctt aatttattgg
     6181 atatttcttc atattatcag atgattgcta aagcgttggt tattttagca gctgtattag
     6241 ctgataatta tctaggcact aaaaaagttt aatctatctt taaaggagat ttctatgaaa
     6301 aaattaacta cgattgcatc agcggttatg ttaagtttat cggttgcagc cactgcttcg
     6361 gcaaaagaga ctatcgctct tgcagtatcg actttagata acccattctt tgtgagcctt
     6421 aaagacggtg cacagaaaaa agcagatgaa ttaggctaca aattagtggt gcttgattcc
     6481 caaaatgacc cggctaaaga gctttccaat gtggaagact taacggtgcg tggggcaaaa
     6541 gtgttattga ttaacccaac cgattcggaa gcggtcggaa atgcggtggc tattgcaaat
     6601 cgcaacaaaa ttccggttat tacacttgac cgtggtgcag caaaaggcga agtggttagc
     6661 catatcgctt ccgataacgt tgccggcggc aaaatggcgg gagatttcat tgctcagaaa
     6721 ttaggctcag gggcgaaagt gattcaatta gaaggcattg ccggcacttc cgccgctcgt
     6781 gaacgtggtg aaggctttaa acaagcgatt gaagcacata aattcaatgt attagccagt
     6841 caaccggctg attttgaccg cactaaaggc ttaaatgtga ctgaaaactt gctctcaagc
     6901 aaaggggacg tacaagctat ttttgctcaa aatgatgaaa tggcactagg agctttgcgt
     6961 gcagtgagtt cagcgaagaa agaggttgta attgtgggct ttgacggcac agatgatggc
     7021 gtaaaagccg ttgaaagcgg taaacttgcc gcaacgattg ctcaacaacc tgaactgatt
     7081 ggctcattag gcgtagaaac tgccgataaa gtgctaaaag gcgaaaaagt ggaagcaaaa
     7141 attccggttg atttaaaggt tatttcaaaa taattatact tgaagatagc gttcgtctct
     7201 gacgaacgct ttgaattaat aaaatagcac tcgtcagaga ctagtgctat cagaatccta
     7261 gttttgttgt actaggtaat ttgagggctt aatatgaaaa aactcaccgt tctcggtagc
     7321 attaacgctg atcacgtgat ttccgttccc tattttgcca aaccggggga aacgctcacc
     7381 ggacatagct gccacattgc ttatggcggt aaaggggcaa atcaggcggt ggcggcagca
     7441 cgtttgggag ctaaggtttc tttcatcggt tgtattggca gtgatgacat cggcaaagca
     7501 atgaaatcag cctttgagca agatggcatt gacactcgct cgattaaaac gattccgaat
     7561 gaaatgaccg gcattgcaat gattcaagtg gcggaatcgg gcgagaacag tattgtgatt
     7621 tcagccggag cgaacggtca tttggatgaa acggttgtgg caaagtgtgc agccgaaatc
     7681 acacaggcgg attatttgct aatgcagcta gaaacaccgt tgccggcgat tgtgcaagca
     7741 gcaaaattgg ctcagcaaaa cggcacgaaa gtaatattaa accctgcgcc tgctcgagcg
     7801 ttacccgatg aactgttaaa cttactggat atgattaccc caaatgaaac ggaagcggaa
     7861 atattaaccg gtgtgaaagt tgttgatgaa gccagtgcga ttcaagccgc acaagtgttt
     7921 caccaaaagg gcatcgaaaa agtgttgatt acacttggct caaaaggggt atttgtaagc
     7981 gaaaacggtg taggcaaaat cgttgcaggc ttccgtgttc aagcggtgga taccactgcc
     8041 gcaggggata cttttaacgg agcattagtg actgcaatgt tagaagataa accgctggat
     8101 caagccattc gttttgctca cgcagcggca gcgattagtg tgactcgcaa aggggctcaa
     8161 ccttctattc cgacccgtca ggaaacactg gattttctaa gccaacaagc ggtgagtttt
     8221 taggaaaatt ttgcaaatgg caacaatgaa ggatattgca cggcttgcac aggtttccac
     8281 ctcgaccgtt tctcacgtta tcaacaatag ccgatttgtc agcgaggaaa ttcgggaaag
     8341 agtgcagagg gtggtgaaag aactgaatta cacgccttct gcattggctc gtagcctcaa
     8401 agtgaatgaa actaaaacca tcggaatgct ggtaacggca accggcaatc cgttttttgc
     8461 ggaggtgatg gcgggggtgg agcaatattg ccagcaacat caatataacc tgattattgc
     8521 cactaccaac ggtgacaccg agcgtttgca acaccatttg caaatgctga tgcaacgaaa
     8581 agtagatggc ttgttactga tgtgtggcga taccagattg aatgccgatg agagcttgaa
     8641 tattccgctg ccattggtgg tgttagactg gtggtttacc gagctcaatg cagataaaat
     8701 ctttgaaaat tcaatatccg gcggctatct cgcaacaaaa accttaattg aagcagggca
     8761 ttctaagatt gcgattatta ctggaaacct aaaaaaatca ttggcaaaaa atcgtttaga
     8821 aggctacaaa aaagcacttg ccgaggcgaa tattccactc aatccaaact gggtgttcga
     8881 aagccatttt gattttgccg gcggggttaa tggaatgaat gctttgcttg cccaaagcga
     8941 aaagccgaca gcggtatttg cctgtagcga caccattgct ctaggggctt accaagcaat
     9001 ctggcaacaa ggtttacgaa taccgcaaga tatttcgatt atcggctatg acgatattga
     9061 actggcaaaa tacctttccc caccgctgag taccattagc cagcccaaag cggaactcgg
     9121 gcggcttgcg gtggaaactt tgctaaaacg aattcgtttt aaatccactg attttcaaac
     9181 cataatgctt gaacctgaat tagttttaag gcattcaatc caaacaataa acaaaaacgc
     9241 tgaataatgt gaagttattc agcgtttttt atccgatttc aattagcctt tttgctgttc
     9301 caaataaagc acggtggcgg caactcggga atgcacgttt aatttacgca gtaaattgcg
     9361 gatatgcact tttacggttt cttcggaaat aaagagctga gccgcaattt gtttgttcga
     9421 cataccggtt gcgagccatt gtaaaacatc cagttcacga tctgttaagc aacttaaagg
     9481 atcattttct ggctggcggt tgagtaaatg ttggcgaacg gtttcgctta ataccacttc
     9541 accggcagcc gctttacgga tattatctag tagttccggg gtgtcggtat cttttaataa
     9601 atagccgtcc acaccagcat ccattaatgc aaatacatcg gattgctcgt ctgacactgt
     9661 taaaacaatg attctggcat ctataccttg agcgcgcaat gagcgtaaag tatctagccc
     9721 tgaaagccct ttcatattta aatccagaat aatcacatcc ggctcaagtc gtaatgcaag
     9781 tttgataccg tcggtgccgt tgcttgcttc acccactaca ctaaattggt gatctaattc
     9841 caatagttga cgcattccct gacgcattaa tgggtggtcg tcaatgagta aaatttgagt
     9901 tggagctgtc atttatttct cctttccttt ctcttaatcg gttaattttg caattattaa
     9961 ttcaaaatag caagtttagg gatttactaa atgccgcttt tttgatctta gctaattttt
    10021 aactaaaaaa gaaattgcaa aactttgcaa gaaaaagacc gcttgttcgg ctataattac
    10081 tgccaatttt tatttcaagt gtgaaaagaa tgacaaatca aacaacctat tttgccacgg
    10141 cagcccgtgg ttttgaggaa atactaaaaa ccgaactgga gcagatttgt gcggcagaat
    10201 gcaaagtcgc tcaaggcggt gtgcatttta ccaccacgca aaaaggggct tatcaggcat
    10261 tattacacag ccgtttagcc tctcggatct tactgccgct catcagcacc aaaattttta
    10321 gtgatagcga tttatatgct tccatcgtgt catttaactg ggcggattta ttcgatcccc
    10381 gtgatacctt ttacattgat ttcagcggca ctaaccgaga aatccgcaac acccaatttg
    10441 gggcaatgcg agtgaaagac ggcattgtgg attactttga acgcaaaggt tttgcccgcc
    10501 caacagtaga taaagataat ccggatgttc gcattcatgt ttatttggat cgtgaaaatg
    10561 ttgtggtttc gcttgattta agtggagatg ccttacatat tcggggctat cgggaagaaa
    10621 ccggtaaagc tccgttgcgt gaaacattgg cggcagccat tattttgcgt tccggctgga
    10681 aagtcggcac gccattggtt gatccgatgt gtggttcagg cacgttactg attgaagcag
    10741 cacaaatggc agcgaatatt gcccctcaac ttcaccgtaa acattggggc tttaatgcgt
    10801 ggaaagggca tcaacaagcg atgtggaaag ccgtgttaga tgaggcattc cgaaatgttg
    10861 aattgggtgc ggtaggggag aattgcaatt cgtccctaca aaaaatgttc ttcggttttg
    10921 atctcgatca tcgtgtgctg actaaagcaa agcaaaatgc gaaaaatgca ggggtagatc
    10981 atctcattca atggcaacaa ggtgatgtgg ctgcgttaaa aaatccgatt ccggaaaaaa
    11041 tcggcacggt ggtgtgtaac cccccttatg gtgaacgttt aggcacaacg ccggcgttaa
    11101 ttgctcttta ttcggtgttc gggcaacgcc taaaacagca atttgccggt tggaatgcct
    11161 caatttttag cggcgagcct gaattgttaa attgcctgcg tttacgttca gcccgtcaat
    11221 tcaaagcgaa aaacggtccg ttggattgtg tgcagaaaaa ttactccatc agcgagcata
    11281 acaagcggtc agatttagat gaaaatttac aatttgaaca gaatgctcaa gtcgctccgg
    11341 attttgcaaa tcgcttaacc aaaaatatca aaaagatcga aaaatgggcg aaacaacaag
    11401 gcattgatgc ctaccgttta tacgatgccg atctgcctga atataattta gcggtggaca
    11461 gatatggcga ccacattgtt gtgcaggaat accaagcccc gaaaaatatt gatgagcaaa
    11521 aagcccgcca acgcttgtta gatgcagtct ctgctacgct ttatgtgaca ggtgttgaaa
    11581 ctaataaatt agtgttgaaa gttcgccaaa aacaaaaagg cacgaatcag tacgaaaaac
    11641 ttgccaataa aggcgagtat ttctatgtga acgagtatgg ggcgaaactg tgggtgaatt
    11701 taaccgatta cttggatacg ggtttgttcc tagaccatcg cttaacccgt aaaatggtgg
    11761 gcgaaatggc aaaaggcaaa acattcctga atctgtttgc ctacacgggt tcagctacgg
    11821 ttcacgctgc tcttaatggg gcaaaatcga ccactacagt ggatatgtcg aacacctatt
    11881 tgaactgggc ggagcaaaat ttagagctga ataatttatc acttcgccat catcgtttgt
    11941 tccaagccga ttgcttgcaa tggctggcag aatgccgtga gcgatttgag ctgatttttg
    12001 tcgatccgcc gactttctcc aactcaaaac gaatggaaaa cagttgggac gtgcaacgag
    12061 accatattga gttaatgaaa cagcttaaac gtattttaac cgctgatggt accattgtgt
    12121 tctcgaacaa taagcgtggc tttaaaatgg attttgacgg tttggcagca ttaggcttaa
    12181 cggcggaaaa tatttcgcat aaaaccttac cgttggattt tgaacgcaat ccgcaaatcc
    12241 ataattgttg gattgtgaag aatgtataga taataccctc gacccttgtg ggagagggat
    12301 agatttttct tcgttcagaa gaaaaatcag ggagagggta agaagttact gatgaaagag
    12361 ttatttcccc ctctctctga aaaatatttc tgaacgaaat atttttcggt ctctctccca
    12421 caaggggaga gagtaaggct aaaaaatgtt agatattgtt ttatacgaac ctgaaattcc
    12481 gcaaaacagc ggaaatatta tccgcctttg tgccaactgt ggctttcgtt tgcatatgat
    12541 tgaaccgttc ggctttggtt gggacgataa aaagctccgc cgttcggggc tggattatca
    12601 cgaatttgtg gatattcaaa aatataaaaa ttttgaagat ttccttgagc gtgctaagcc
    12661 taaacgcttg ttcgccttaa ccaccagagg ggagcagaac cacagtgatg tgaaatatga
    12721 acttggcgat tttttaatgt tcgggccgga aagcagaggc attccaaagc cattattagc
    12781 ggaaatgccg atgtcgcaaa aaatccgcat tccgatgtgc aaagacagcc gcagtatgaa
    12841 tttatctaac tcggtggcgg tggttgtgta tgaggcgtgg cgacaattcg gctaccaaaa
    12901 tgcggtagcg gcacaatcta tttaacttgc aagcggtgtg attttggcta ttttttgcaa
    12961 gtttgtggtc aaggttgggg gaggctcgac cttgactaat taagaacatc tattgtgtct
    13021 attcttcttc atttttagct ggaggtaaaa aattctctcc ggtaacaact gatttacctg
    13081 ttttattctc caattcctga cgggcatttt tggcaatatt gccaccttgt tttcctgctt
    13141 gggcattttc atcaacccca actgcctgca tactttctgc aatttgccga ctggaaagtt
    13201 cagcaagtgc tgtaaataac aattcagctt cgctcatatg atctcgcaga ttttggcttt
    13261 ttaaaccttt aagcgattta tgcttttgta cagatagtcc gctccattct tgatgaatca
    13321 cattggttaa aaatgcaaaa tcttgtggct gttcaacccc tgacgatttc caataatcgg
    13381 tcagtttatt tcgggtttct tgtcccatca ttctttgctg aatccatttt tcacttcgtc
    13441 ccatcttctg ccaattctcc cttgctcgat ctagactttg acttggatcg tttatttcct
    13501 gtaagcgttc ataacctact tttgctaacc attgtttgaa gggctctgct ttcggactag
    13561 ggatagattg aataagtcgg aaaagttgtt cggtatctgc tacatcagtc aaacgcattt
    13621 ttccgtcagc agagggcatt ttcaacccgt gacaatttgt cacggtttca ttgccttctg
    13681 cctttagcct ctgttttagc ttacgccaat aagcagaggg atctaggctt tcggttaaaa
    13741 tagcaatcac atcaataata gaaaaatacc atttatcttt ttcttcatcg taatgactgc
    13801 gtacagattt ctgttcaaaa agtttaattt cttgcataat aaaaatactg tatataaaaa
    13861 caagaaaagt ataacagttg tcagcttttc agcaagtagc aaaagtgatt ttttcgatct
    13921 cgatcccaaa aatgattttt gggtattgat ttttcaatcg ataaattttc tgtgatcagg
    13981 atcacaaaaa tagcagaaaa aatagaaatt gaagttgtat ttcattaaaa taataaaaaa
    14041 tgaagtgatt tattcagaat tgatatttaa ggagagacta tgcgtttaat tccgttagaa
    14101 actgatcacg atgtgagtgt ttgggctgct cgttatattg ttgatcgtat caatgcattc
    14161 caaccaacca aagaaaaacc ttttgtgctt ggcttaccaa ccggcggtac gcctgaaaaa
    14221 acctataaag aattaattaa attatatcaa gctggtgaag tgagctttaa aaatgtggtg
    14281 actttcaata tggacgaata cgtcggctta cctaaggaac accctgaaag ctaccacagt
    14341 tttatgttca agcacttttt tgaccacgtt gatattccgc ttgagaatat caatatcctc
    14401 aacggtatgg cggaagacgt gaatgcagaa tgcgaacgtt atgaagaaaa aatccgtttt
    14461 tatggtaaaa tccatctgtt tatgggtggg gtcggtgtgg atgggcatat tgcgtttaat
    14521 gagcctgcat cttcgctttc ttcccgcact cgaattaaaa cgcttaccga agatactcgc
    14581 attgcaaact cacgtttctt taacaatgac gtaagccaag tgccgaaatt tgctttaacc
    14641 gttggggttg gtacgttgct tgatgccgaa gaagtgatga tcttagtgac cggccataac
    14701 aaagccttag cattacaggc gtgtgtggaa ggggcggtaa atcatctttg gaccatcagt
    14761 tgcttacaat tacatcgccg tggtatagtg gtgtgtgatg agccggcaac ccaagagctg
    14821 aaagttaaaa cagttaagta tttcaaagag ttagagaaaa acgtagctcg ctaattctga
    14881 ttttacaagc ggttaatttt gtaatatttt ttacaaaaac gaccgcctgt tagcatttaa
    14941 agagaagaga gaaaatgaac cattatgcct taacaaactg tgtgatttac accggtgaac
    15001 aagtgcttta ccaacacgca ttagtggtga aagaagataa aatcgactcc attgttttgg
    15061 aagaaaattt accgctggat ctgcaaaaaa tcgacctaaa aggagcgaat ctttcagccg
    15121 gttttattga cttgcaactg aacggctgcg gtggggtgat gtttaatgaa gaaatcacta
    15181 cccgcacttt agaaattatg caggaaacca atctgcgttc aggcacaacc agctatttac
    15241 cgacttttat tacctcgcct gatgagggag tgaaacaagc ggtggcggta atgcgtgagt
    15301 atttgtcgaa acacaaaaac caagcactcg gcttgcattt ggaaggacct tatctaagtg
    15361 tggcaaagaa aggagtacac cgtccggaat ttatccgtga aatcagccct gaaatgttag
    15421 atttcttatg cgataacggc gatgtaatta cgaaaatcac gattgcagca gaaaacccga
    15481 ccgcagacca tatcaaacgc tttaatgatg caggaattat tgtatctatc gggcattcca
    15541 atgccacttt tgctcaaacc aaacagcgaa ttgccgaagg ggcagcgttt gctacgcatt
    15601 tacacaatgc aatgtcgccg gtcagcaacg ggcgtgaagg cggtgtagta ggggcggtgt
    15661 tggatagcga tatttacacc ggcattattt gcgatggctt gcacgttgaa tggggcaaca
    15721 ttcgcattgc caaaaaagcc aaaggcgata aattagtgat tgtcagcgat gctgttgctg
    15781 ccgcaggaag tgatattgag tcgtttattt ttgtcggtaa aaaagtcacg gtgaaagatg
    15841 gcaaatgcta cgatgaattc ggagcattgg gcggtgcggc aatcacgatg atcgaatcca
    15901 ttcgcaacgt agtgcaacat tgcgatatta gcctgaatga agcaatccga atgagtaccc
    15961 tttacccggc aaaagcgatt ggggtagagg aaacactcgg ctcacttgaa gccggcaaaa
    16021 ttgccaacct tgcgattttc gataatcaat ttgaagtaaa agcgactgct gtaaacgggc
    16081 aattacagtg gcattaattt tgctacaaat tctaagcata acagcatata atccaaaggc
    16141 aggcattgtg tctgcctttt atttataggg agaataacat gcaatttaaa gattacttag
    16201 ccacttttcc aactattgat catctagccg gcttaaacgt gataaatagc ggtgaagtga
    16261 ttcaacatat tcctgcgatt gaaggtaaat taggttcact aaaactttac aatgcactgt
    16321 ttgcgaaatt tgatgggaaa ttaaccgcta gtgcagcaaa acaagggttg gaatggtttg
    16381 ccgaacacgt tgaagatgcg aaaaataatg tgggtaagca cccgaatatt gatctattat
    16441 ttagggtaat tgagcaagat ttatctttaa gtttagagcc gattgttaaa taagattgca
    16501 ctagtgaaaa ataacaagcg gtcattatct gcaaaatttt tgcaaataat gactgcttgt
    16561 gtttaagagg cttatttcac ggtaatgcgt gcaaatttgc gtttgccgac ttggtaaaca
    16621 aaagtgcctt tttgagcagt ttgtttcaca tcttccactt tttcaccatc aattttaacc
    16681 ccgccttgtt gggctgagcg aattgcctct gaagtggacg gtactaagcc ggcttctttc
    16741 agtagagccg ctaggccgat ttcaccctca aaggtaaatt caggcacttc atcaggaatt
    16801 gccccttttt ggaaacggtt gataaactct tgctctgctg catctgctgc cgcttcatcg
    16861 tggaaacgag cgataatttc ttttgccagt agaattttca catcacgcgg gtttttgcca
    16921 ttttcaacat ccgcttttaa ttgtgcaatt tcgtctaatg gacggaatga gagcaggttg
    16981 taccaatccc acattaaatc gtctgaaatc gacataattt tgccgaacat ttcgcttgga
    17041 gcttcagtta caccaatgta gttgccgaga gatttcgaca tttttttctc gccgtctaag
    17101 ccgacaagta gtgggagtgt cattgccact tgtggttttt gaccggctga tttttgtaac
    17161 tcacgtccaa ctaacaagtt aaaggtttgg tctgtaccac ctaattccac gtcagctttc
    17221 agttctaccg agtcgtgacc ttgtagtagc ggataaataa attcgtggat tgcgatcggt
    17281 tgttggttcg tgaaacggtt tttgaaatct tcacgttcta acattcgagc aacggtgtag
    17341 ttggaggcta agcggatcat accttccgta cctaacttgc ctaaccattc ggagttgaat
    17401 acgatcttgg ttttttgtgg atctaaaatt ttgaagatct gctctttata ggtttcggca
    17461 ttgcgtaaca cgtcttcacg gctaagtggc ggacgggtag agttttttcc tgatggatcg
    17521 cctaccatac cggtgaaatc accgattaag aaatagactt cgtgtccgaa ttgttggaat
    17581 tgacgaagtt tgttcagcac aacagtatga cctaagtgaa tatccggtgc agttgggtct
    17641 gcccctaatt taatacgcaa tgggcggttt tcttttaatt tggtgattaa atcttcttct
    17701 gaataaatat tttccacgcc acgtttaagt tcggcaagga ctgattcgat agcttgagtc
    17761 atttatcttc cttttagtct tgaatataaa aaatggatct attatagcgg tatgaattga
    17821 aattgatagg ctataggcga aaaaaaacgc cgtattttgt gggggaatac ggcgtaaaga
    17881 gttggagtga ttacctatta tttttgaagt gatttaatga taatgattat catctgttaa
    17941 gtcaatactt tttttgaaaa ttttcaataa gaattattct catcaattaa gtaagatgga
    18001 tactacggca attagtgaag aatgtacagc ggaattttcg tattgtaaga gtgttggtaa
    18061 gcggtatttt tagaaaaaac ctccgagagc ggttattttt cggaggtttt ttgcaaatga
    18121 ggatttacat cgttgaaatg tatttcaaca tcacccccgc tgcaatcgca gagccaatca
    18181 cgccggcaac gtttgggccc attgcgtgca ttaacaagaa gttttgttta tcgtactctt
    18241 gtccgacttt gtttgatacc cgtgcagcca tcggcacggc agaaacaccc gctgagccga
    18301 taagtgggtt gattttgtgc tgactaaagc ggttcattat tttcgccata atcacaccgc
    18361 ttgcagtgcc gatcccaaag gcaatcacgc ccaatactaa aatgcctagt gtttgcggtt
    18421 gtaagaattt gtctgcgacc aattttgccc ccaccgataa ccctaagaaa atcgtcacga
    18481 tattgattaa cgcattttgg gcggtgtcgt ttaagcgttc tactacgcca ctggttcgca
    18541 gtaagttgcc aaagcagaac attcccaata acggtgcagc atccggcagt aagagtgcca
    18601 ctaataatag caacacgata gggaaaataa ttttctcacg gttgcttaca ttacggagct
    18661 gaaccattcg gattttacgt tcttgctcgg tggttaaggc tttcataatc ggcggctgaa
    18721 tcagtggcac taacgccata taagaataag ccgctaccgc aatcgcacct aataattcag
    18781 gggcaagttt gctggcaaga taaatcgcgg tcgggccatc tgccccgccg ataatcccaa
    18841 tcgcagcggc ttgtggcaat gtgaagtcga taatgcctaa ccagtttagc cctaatgcac
    18901 ccagtacggt agcaaaaatc ccaaattgag ccgcagcccc aagcattaac attcgagggt
    18961 tggcaagtaa agggccgaaa tcagtcatcg ccccgacacc cataaagata ataagcggag
    19021 caacgccgta gccgatagca actttataga ataatgccaa cacaccggcg gtatagccca
    19081 tatcgccagc cattacttca agctcatttt gaacagaggg agcagccagt gcgatggcat
    19141 ctttaatcga atgcagatca aggcttgtac tatttacctt agcagcaata attgccagtt
    19201 gctcggcaga accgctgtgg agtaaattgt ctaatgccgt cattgccata cctgcttccg
    19261 gaatgtttga catcaaacca ccaaagccaa taggcagtag taaaagcggt tcgaattttc
    19321 gggcgatggc aagccaaagc aacactaaac tgatgacaat cataatcgct tgccccagtt
    19381 ctaaatgcat tagccccata cctttaaaaa gtgcaataat actttccata ccggactcct
    19441 aggcaatact cattaaagta tcatttaccg ccacaacatc gccttgtttg acattaatgc
    19501 cttgaatcgt gccggatttt gccgcacaaa tttgggtttc cattttcatt gcttcaagaa
    19561 tcagtaacac atcgccttca gcaacttgtt gcccctcttt cacttccact ttcaaaatgt
    19621 tccctgccat tggagcattc accggttcgg cattggctga tagcgtattt gcagattttg
    19681 gtgcagaatc gaccgcttgc ggagccggtg ttgctggtgt tggagcgata ttggttatat
    19741 cgccaccttc actcaccttc accacaaagg ctttgccttc aagctcaacg gtataaatgg
    19801 ctgaaccgga ttgtgtttgg gcttttggtg cagaagcagc ggaggcttgt gccggttttg
    19861 cttcatcagc acttggcact ggctcaaagg cagacggatt attgcggttt tccaaatatt
    19921 tccagcccac ttgttggaag agtgccacaa tcaatacatc atcaatcatg ttttcagata
    19981 gcgtaatgcc tttttctttt gcacttgcag tcacttctgc cactaatttt tccagttccg
    20041 gcggaagatg atcggctggg cggtcggtaa tcggctctgc tccctcaagc actctgtctt
    20101 gcaaggcttt gtttaccggt gccggtgtgc gaccatattc gccttttaaa atacctgcag
    20161 tttctttggc gatagtttta taacgttcgc ccattaatac gttcatcacc gcttgtgtgc
    20221 cgacaatttg tgaggttggt gtcaccaacg gaatattgcc taaatcttca cgcacacgag
    20281 gaatttcttg taaaaccaag tctaatttat ccgacgcatt ttgttgcttg agttggcttt
    20341 cgaggttggt cagcatgcca cccggcactt gggcaaccaa aatacggcta tctataccac
    20401 ggagctgtcc ttcaaatttt gcatattttt tacgcacgtt acggaagtag gcagagattt
    20461 tctccagagc tggaatgctc aagccggttt catacggcgt gccttgaagt gtggcgacaa
    20521 tagactcggt tgccgggtga ccgtaagtgc cggacattga tgaaatggag gtatcgacac
    20581 catcgacacc ggcttcaatc gctttgagca acgccatttc agccataccg gtggttgaat
    20641 ggcaatggag atgtagctca acgtcgtagc gttttttaat ttcgctgact aattcatagg
    20701 ctgccattgg ggttaaaatg cccgacatat ctttgatcac caacgaatcc acgccaattt
    20761 ccaataattg ctcggttaca tccaaccacg tttgtagggt atgaacaggg ctggtggtgt
    20821 aactcaaagt accttgtgcg tgcccgccgt gttttttgac cgcttgtaat gcggcttgca
    20881 tattgcgagg gtcgttgagg gcatcaaata cacggaacac actcataccg tttgccaccg
    20941 aacgctcgac aaatttatct accacatcgt cggcataatg acgataaccc aataagtttt
    21001 gcccacgtag cagcatttgc attggggttt tcggcattgc ttttttcagc tcacgtaaac
    21061 gcacccacgg atcttcgcct aaaaaacgaa tacaactgtc aaaagttgcc ccgccccaag
    21121 tttctaacga ccaatagccg atattatcca gctcggaggc aatcggtaac atatcgtcta
    21181 agcgtaaacg agtcgcaaaa agggattggt gtgcatcacg caaaaccaca tcggtaatcg
    21241 caattttttt cggttgagtt gtcataatca aattccttct aattatttta tttttgaaat
    21301 cttgttaatg ttgcccgtta attcgacgat gatgagcaat cgcagcggca atcacagggc
    21361 gtaaacgctc taaatcatct gggggagatt gaggcacagt tttagaggct ggaatagaaa
    21421 caggttcggg gaaatattga ttgataatct tggaaataaa gctgatggca taaattaaaa
    21481 ccagcaggaa cagcataaca aatcccattc cggctaccat taaatttata ccttccgcaa
    21541 agagttctgc aggtgccata atttatcctt aaaatgtaga aatgatgaag aaaatgtaga
    21601 aaaaattcag atttatttca aattatttag cctcaaaatg agtggtagat cacaaacttt
    21661 aaacgcaagc ggtcagattt tacaaatttt ttacaagagt agttaaaatt tgcaaaacct
    21721 gaccttaggt tagcttgaag ctaagtcgtt atgccattag ccccgaaata tattttgaaa
    21781 gggtcattgc acttagcacc gccattagaa tcaccacaat cgcccctgaa acggtcatcc
    21841 acacagggtg tttgtagtcg cccacaatct tggttttgtg agctgccagc agaattaacc
    21901 cgagggaaat cggtagaatt aagccgttaa gcgtccctac aaacaccaag acttgtgccg
    21961 gtctgccgat ggttgccagc acggcggttg aaaccacaat aaaggcgaca atgaaacagt
    22021 ttttgtgttt ttcgataaat ggcgagaatg aagtaatgaa ggaaaccgag gtataagccg
    22081 ccccaatcac agaggtaatg gaggctgccc aaatcaccac gccgaagatc atcaaaccga
    22141 catcgccggc aacgtgggca aatggggtag ccgcagggtt tttcggatca agttgcacgc
    22201 ccattgacac cacgcccagc accgctaaaa acagtaccac acgcataatt gaggcgatta
    22261 aaatggctga caccgagctt ttgctcacct cttttaaatt ctctttgcct ttaatgcctg
    22321 catcaagcaa acggtgcgca ccagcaaagg tgatgtatcc accaacagtt ccgcccacta
    22381 gcgtgacaat cgcaatcacg tctaattttt ccggcacaaa ggtatgcacc accgcatcgt
    22441 cgattggcag attggctttt acggcaacga agatggttaa agcaatcatc acaaagccca
    22501 taatttgtgc aaatctgtcc atcactttac cagcttcatg gaacaggaac acgcccacgg
    22561 caatcgcacc gctgaccacc gcacccattt caggggaaag tccggtgaga atgtttagcc
    22621 ctaaacctgc accgcccacg ttgccgatat taaaggctaa accgcccatc acgataagca
    22681 gagccagaaa gtaacctgcc cccggcaata cggcattggc gatgtcttga gctttctttt
    22741 ccgatactgc tacaattcgc caaatattca gttgagcacc gatatcaagc aagatcgaga
    22801 gtaagatcac aaagccgaag ctggcaagta gggtttgggt gaaggtggct gtttgggtta
    22861 agaaccccgg cccgatggcg gaggtcgcca ttaaaaatgc tgccccgagt agggcgctac
    22921 ggttgttgtt tgacattgtg ttggttcctt ttttgttgtt aatgagtcat tattcgtgga
    22981 tttatcatgg taatattccc ctctttagca aagaggggtt aggggagatt tggcagtaga
    23041 actcatcgaa gtgagagagt taataatgct caatttaacc tcttgaaatt acttattttc
    23101 tccgtaaatc gcttctgtca aatctccccc agcccctctt ttctaaagag gggagttcga
    23161 tctccaagag ttttatttct ggttttccgt ccattttgac taaaacagga tcaggctttc
    23221 accaaaatcc cctttgcctg taactctttt ttaattcgct cggcaaatac cacggcgtgt
    23281 tcgccgtcac cgtgtaagca aatgctgtcg gctttaatcg ccacattacc accatcaacg
    23341 gttggtacag tgccgtctaa caccatttgc aagacttggc tgatcgcttc atcatcgctt
    23401 tctaccattg catcatcacg ggtgcgaggc acgagcgagc cgtcagctaa atagtggcgg
    23461 tcggcaaaga cttcggaaat ggtttccaaa ccgtgctgct cggcaatgct caacatcagg
    23521 ctgccggata agcccatcag tttgaggttg ggatcgaact gtttgaccgt attggcgata
    23581 agggtggcaa ggtgagggtc tttggcggcc atattgtata aagcgccgtg cggtttaacg
    23641 tagctcatcg gcatattttc cgcatcacat aaggctttgg cggctcccag ttggtagagc
    23701 agacaggctt taagttcatc atcgggcagt tgcatattgg tacgcccaaa gttttcccta
    23761 tctggaaaac tcgggtgagc gccaactcgc acgctgtttt ccttcgccca gttaatcgct
    23821 ttacgcattt cattgtaatc accggcgtgc aagccacagc agacattcgc cgaagtaacg
    23881 agctgtaata atgaatgatc gttgccacaa ccttcggcaa gatcgacatt taaatcaacg
    23941 tgattcattc gcttttctcc gaattgtttc caaataattt tgatcttttt gataaatttc
    24001 gaccgcttgt tcacggctta cttgctcaaa ttgcaccgtt gagccgaacg gattttgtgc
    24061 caaccgcccg agatcggcct gaataatgca ggcaattttc ggataaccac cggtggtttg
    24121 ggcatctgcc atcagcacaa tcggctggcc gtccggcggc acttgcaccg taccactcgg
    24181 ggctgcgtag gagagcattt caagggaagc ggtcaattcc aacgcttttt ctgcaaaacg
    24241 gtagcccata cggttgctgt tgttttgcag ttgccaccct tgttgccaaa agcgttcacg
    24301 gctatctgcg gtaaaggctt catattcgct cgaagcggtt gcccgaatgc gtgaggtgaa
    24361 atcaatcggc tcaatcgaca tcaaagaaag tcggctgtct ctgcggcctg tggcgatgtt
    24421 atcgccggct tttaacattc tgccttgaaa accgccaaat tgagctttga gagcggtact
    24481 tgccgaacct aacacctgcg gcaccagaaa accgcctgcc acgcataaat aggcgtaatt
    24541 gccgagaaca atccgtttta tcgtcagcgt ttgacgggcg ttggcagtgt agcggtaata
    24601 ggaaaaaacc ggcgtgccgt ccagctccgc ctccaccaat gcaccggtga ggcaaaatgg
    24661 cgtgtcgcaa tcaaaggtaa tccgcattcc gccaagggta agttcaatcg caggtgcatt
    24721 atttgcattt tttaacaata aattacccgc ttgtaaggca aggctgtcca tcgcaccgcc
    24781 gtggctcacg cctaaatggc gataaccata acgccctaaa tcttgaatgt gggcaaaacc
    24841 ctgtattatt tcgatataaa tcatagcgtt atactctccg ccacaaatct aacattatcg
    24901 ccggctgtaa gtagcgttgg cggattgtgt tgaatatcaa acaacggtaa ctcggttcgt
    24961 cctaacagtt gccagccacc tggtgaggta aagggataaa tgcctgtttg cctgccgccg
    25021 atgccgaccg aaccggcagg gactttggtg cgaggcacgt ttcggcgtgg ggtgtgtaaa
    25081 ttttgcggta agccgttgag gtaaggaaag ccgggttgaa agccgatcat aaacacggtg
    25141 taagtcggtt cggtatgacg gcggataatc tcttcgggag tggtattgtg gaattgggcg
    25201 acttcaaaca gatcttcgcc aaattcaccg ccgtaatgga cagggatttc aatcaggcgt
    25261 ggggattgtg cggcttgggc ttggtcgttt tcccagagtt gttgaaccgc ttggataagg
    25321 cgtgtgctat cggtgccaat ggcgtgaaat agggtaaaat tgttcattcc taccaccact
    25381 tccaacacgc catctaaggc tcttgcctgt tctgccaccc gccaaatctg ttgctgtttg
    25441 gcaagctctg caggcggttc ggctaagcag agcagggaat gttcgctggt atgatgaatc
    25501 gtcagcataa ttgccctcaa attgttacaa aaaggtaaca actttttacg ctgatatatc
    25561 cagactgtca attttatttt gttgaaaatg tgaaatagct cttaattttc agaaatttga
    25621 tcatttctta ttcgccaaaa cgttgcaaat ctgggcttgc ctgattctgt gacacctcga
    25681 tatttatagg taatgattga gccaatcggt ggcggatttt ctcgttcttt atctttaaaa
    25741 ccgctgccaa tccgaaaacg tccacgttga ttttcacaag tgattgcccc gagtttatcg
    25801 gtatatttcc ctttgccttt atgatgggca accacagtgc attcctcatc taaaaccggt
    25861 ttgattttca aaatttgggc agaacgacct tgaatatagc ctgcattcgg gttgcgaacg
    25921 ataacccctt cgccaccttg ttccagcaca gattggtaaa attgttgaag gtgggcttta
    25981 tctttaatcg gaatttgctc aataatagcg atatggagcg ttggatgttg cttcagataa
    26041 ttctctaagg tcgccagccg ttcaatcaaa ttcccttgtg catttggcac atcgaacacc
    26101 tgtaatttca gcttgtgcca acctttgggc tgagcggaac gcacaatgct tgaaatttcc
    26161 tcaaatttgc cccgttcgct aaacagttcg ccgtcaatcg caaaaggagg gaaatcttga
    26221 ataaaatagt cgggtggatt gagcggataa ccttggcggc tgatgagctg ttgaccgtcc
    26281 caaaagcctc gcacgccatc gagtttttct gacattaccc agccactgat gtcttgatct
    26341 tgatattgct caacgagcat taactcgggc gatttggcaa aaatagggtt accaatgaag
    26401 agtaggaata agagcagttt tttcatagtc tctccgaaat agtgcctccg aatatgcaag
    26461 gcactataaa ggaaagcgtg caaacagtca gaaatgaatc tcaatttttc gacgcagatc
    26521 gcaaaatttt ccgaaaaact gatcgcttga gtgagaaatt taacgtactg tttgaattaa
    26581 agcagaaata tcctcgctaa aggtttccaa cttcgccatt tcttcaattt ggctatgaga
    26641 atatttcttc acattgtaaa cgaccaccat acttacatca cctacttgca ataaattact
    26701 ttcgccaaaa ggcgtgtagc gtgttgcccc aatgctgata atcgctttag ttgggtagtt
    26761 tgcctgtttt aacatttcgg aaatgttgtt catcggacct tcatcgggct gattattcat
    26821 tctctctaca atccaatcga gcaatttttg atggaaatag ctgtactcca ccgcagggct
    26881 gtcgatgccg taggtattca gctcgccatt acgtttatgg aaacaagcga tgttgtaatt
    26941 atccagcgtg ccgcctttgt tgaagttatc taacggaaga tgaattgccg aaagcccttt
    27001 agacgaagcc ccccagtttt tcttttcaca gattttattc gcattcggac ggcggataga
    27061 gcagtcattg taagccgcaa aatgggttgg cgtgagcgaa accacttgct gatcttggta
    27121 gccaatttca caaattaacg ccacttcagg ctcaatttgc agattatcag catcactcgg
    27181 gaaattaatc gcagtatttg aaagcggata ggtggataaa aactgataat cccccaaatt
    27241 ttccgccggc acataaaacg ggaaaatcgc ctttggctgc actgcttcca ctgttttcac
    27301 tttcgcaaaa tccgcctcct ctccggcttg ttctaaatgt ccagcaaaat tgccggccac
    27361 gcctaaaccg ataaagtgtt ccataatcta ctccttaatt ggtaaaagtt ggataaaatt
    27421 ttaccgcttg taaccaaaaa ttgcgaatgt ttattttgat ctgattgata gaaaattatt
    27481 gaattgagat taaatttagc catattttga acataaaatt agcgctttgt tataaaaaca
//
LOCUS       DANLXK010000018        27227 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.018, whole genome shotgun sequence.
ACCESSION   DANLXK010000018 DANLXK010000000
VERSION     DANLXK010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27227
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            76..2685
                     /gene="adhE"
                     /locus_tag="PXD88_000661"
                     /gene_synonym="adhC"
     CDS             76..2685
                     /gene="adhE"
                     /locus_tag="PXD88_000661"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL6280263.1"
                     /translation="MAKNTQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKAS
                     VAALDKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGI
                     TEIADPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRD
                     AAVAAGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVG
                     AGNVPAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGV
                     YLVNKKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNIL
                     LAECAFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKA
                     LAKTFGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLI
                     NIKRVGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRIT
                     EQLRQRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMW
                     LFYEQPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDG
                     DIKYPLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGL
                     ALQAIKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFH
                     TIHGRTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAV
                     EAYAQAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIED
                     MEAIMTKAYYGKE"
     gene            2832..3728
                     /locus_tag="PXD88_000662"
     CDS             2832..3728
                     /locus_tag="PXD88_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL6280264.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3738..5147
                     /locus_tag="PXD88_000663"
     CDS             3738..5147
                     /locus_tag="PXD88_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL6280265.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5254..6477
                     /locus_tag="PXD88_000664"
     CDS             5254..6477
                     /locus_tag="PXD88_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL6280266.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(6515..7711)
                     /locus_tag="PXD88_000665"
     CDS             complement(6515..7711)
                     /locus_tag="PXD88_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL6280267.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(7731..8222)
                     /gene="tsaE"
                     /locus_tag="PXD88_000666"
     CDS             complement(7731..8222)
                     /gene="tsaE"
                     /locus_tag="PXD88_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL6280268.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(8222..8776)
                     /gene="orn"
                     /locus_tag="PXD88_000667"
     CDS             complement(8222..8776)
                     /gene="orn"
                     /locus_tag="PXD88_000667"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL6280269.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(8786..9265)
                     /gene="coaD"
                     /locus_tag="PXD88_000668"
     CDS             complement(8786..9265)
                     /gene="coaD"
                     /locus_tag="PXD88_000668"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL6280270.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(9267..10547)
                     /gene="waaA"
                     /locus_tag="PXD88_000669"
     CDS             complement(9267..10547)
                     /gene="waaA"
                     /locus_tag="PXD88_000669"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL6280271.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(10727..12106)
                     /gene="yegQ"
                     /locus_tag="PXD88_000670"
     CDS             complement(10727..12106)
                     /gene="yegQ"
                     /locus_tag="PXD88_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL6280272.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            12234..12605
                     /locus_tag="PXD88_000671"
     CDS             12234..12605
                     /locus_tag="PXD88_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280273.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(12644..16120)
                     /gene="dnaE"
                     /locus_tag="PXD88_000672"
     CDS             complement(12644..16120)
                     /gene="dnaE"
                     /locus_tag="PXD88_000672"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL6280274.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(16345..17442)
                     /gene="lptG"
                     /locus_tag="PXD88_000673"
     CDS             complement(16345..17442)
                     /gene="lptG"
                     /locus_tag="PXD88_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL6280275.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(17442..18551)
                     /gene="lptF"
                     /locus_tag="PXD88_000674"
     CDS             complement(17442..18551)
                     /gene="lptF"
                     /locus_tag="PXD88_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL6280276.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(18725..19522)
                     /locus_tag="PXD88_000675"
     CDS             complement(18725..19522)
                     /locus_tag="PXD88_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280277.1"
                     /translation="MRFWGKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGN
                     VGNLLQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKI
                     GERLFLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIA
                     TNQEKIMAAKGKKAPQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFED
                     IAQGENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
     gene            19760..21256
                     /gene="pepA"
                     /locus_tag="PXD88_000676"
     CDS             19760..21256
                     /gene="pepA"
                     /locus_tag="PXD88_000676"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL6280278.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
     gene            21430..22377
                     /gene="cysK"
                     /locus_tag="PXD88_000677"
     CDS             21430..22377
                     /gene="cysK"
                     /locus_tag="PXD88_000677"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL6280279.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLLFEGIEA"
     gene            22563..23825
                     /gene="rho"
                     /locus_tag="PXD88_000678"
     CDS             22563..23825
                     /gene="rho"
                     /locus_tag="PXD88_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL6280280.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
     gene            complement(23886..25004)
                     /locus_tag="PXD88_000679"
     CDS             complement(23886..25004)
                     /locus_tag="PXD88_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6280281.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(25017..27164)
                     /locus_tag="PXD88_000680"
     CDS             complement(25017..27164)
                     /locus_tag="PXD88_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6280282.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
BASE COUNT         7882 a         6090 c         5326 g         7929 t
ORIGIN      
        1 caaaataact cttttgggta ataatttcat cagttaaaaa aattatcaaa tttaaatttt
       61 atgaggaacc aaactatggc taaaaatacg caaccatttg atgcccaagc agaagtgaat
      121 gagcttgttg aaaaaggctt aaaagccctt gatgagttta gaaaactcaa ccaagaacaa
      181 gtggatttta ttgtcgctaa agcctctgtt gctgcccttg ataaacacgg tattttagca
      241 atgcacgctt acgaagaaac cggacggggt gtgtttgaag acaaagccac taaaaacctg
      301 ttcgcctgtg agtatgttgt caataatatg cgacatttga aaaccgcagg ggtcattagt
      361 gaagatgatg tcaccggtat taccgaaatt gccgaccctg tcggtgttgt ctgcggtatc
      421 accccaacca ccaacccaac ctcaaccacc attttcaaag cgttaatcgc ccttaaaacc
      481 cgtaacccta tcgtttttgc tttccacccg tctgctcaac aatcttctgc ccacgctgct
      541 caaattgtgc gtgatgctgc cgtggctgcc ggtgcaccgg aaaactgtat tcaatggatt
      601 acccagcctt caatggaagg tacatctgct ttaatgaaac acccgggcat tgcaactatt
      661 ttagccaccg gcggtaatgc aatggttgaa gccgcttact cttgcggcaa accggcatta
      721 ggagttggtg caggcaacgt accggcttat gtagaaaaaa ccgctaaatt aaaacaagcg
      781 gtgtatgaca ttgtaatgtc aaaatctttc gacaacggta tgatttgtgc ctctgaacaa
      841 gcggcgattg tagataaaga aatttacgct gagtttatta aagagatgca atcttacggc
      901 gtctatttag tgaacaaaaa agagaaagcc ttattggaaa aatacatttt cggtattgat
      961 aaagccaaag atgaaaactg ctcaggtgca aaactcaatt cagcggtggt tggcaaaccg
     1021 gctgcgtgga ttgcagaaca agccggcttt aaagtaccgg aaaaaaccaa tattctgtta
     1081 gccgaatgtg cctttgtggg cgaagctgag ccacttaccc gtgaaaaact ttcgcctgta
     1141 ctggctctgt taaaatccga ctccaccgaa cacggtttgg aattgtctga agcgatggtg
     1201 aatttccacg gtttagggca tagtgccgcc attcataccg aaaacaaagc cttagccaaa
     1261 acctttggcg aacgggtaaa agccattcgg gtgatttgga actcaccatc aacctttggc
     1321 ggtatcggtg atgtatataa ctccttcctg ccatcgctta cgctgggctg tggttcctac
     1381 ggtaaaaact ctgtaggtaa caacgttagt gcggtgaatt taatcaatat caaacgtgtg
     1441 ggcagacgga gaaataatat gcaatggttt aaagtgccat caaaaatcta ctttgagcgt
     1501 gactcaattc aatatttgaa atcaatgcac gatgtgcata aagtaatgat cgtaaccgac
     1561 cgctcaatgg ttgatctcgg ctttgtggat agaattaccg aacaacttcg ccaacgtcgc
     1621 aaccaagtga tgattcagtt ctttaccgat gttgaaccaa acccaagcct gcaaaccgta
     1681 caacgtggta cagaattaat gcgtagcttc cagcctgata ctatcatcgc acttggtggt
     1741 ggttcaccaa tggatgcagc caaaattatg tggttattct acgaacaacc ggaagtcgat
     1801 ttccgtgatt tagtgcaaaa atttatggat atccgcaaac gtgcattcaa attcccacaa
     1861 ttaggcagaa aagcgaaatt tgtcggcatt ccaaccacct ccggaacagg ctctgaagtc
     1921 acaccgtttg cagtaattac cgatggcgat attaaatatc cgctcgctga ctactcgctt
     1981 accccaacca ttgcgattgt cgatcctgcg ttagtaatgt ctgtgccgtc tcacgttgct
     2041 gccgacaccg gtttagacgt attaactcac gctaccgagg cttacacatc gattttagcc
     2101 aacgactata ccgacggctt agccttgcaa gccattaagt tagtgtttga aaacttggaa
     2161 aaatcggtca aagagtttga tgaaaccgcc cgtgaaaaaa tgcacaatgc ttccacaatg
     2221 gcagggatgg catttgccaa tgccttctta ggtatttgcc actcaatggc acacaaaatc
     2281 gggggtaaat tccacaccat ccacggtcga accaatgcga ttttactgcc acacgttatt
     2341 cgctataacg gcacacgccc aaccaaagtg gcaacttggc caaaatacac caattatgtc
     2401 gcagatgtgc gtttccaaga tattgccaga atgcttggct taccggcaga aaccccggaa
     2461 caagcggtgg aagcttacgc ccaagcggta cacgatttag ccgttcgttg cggcgtgaaa
     2521 atgtcgcttc gtgagcaagg cgttgatgag caagccttct tgaatgcccg ccgtgaactt
     2581 gccctacacg catttgaaga ccaatgcaca ccagcaaacc cacgtttggc aatgattgaa
     2641 gatatggaag cgattatgac taaagcctac tatggcaagg aataaagcac aatttaatcg
     2701 ttaaacttac taaatggccg cttgcaagcg gtcatttttc ttgaaatttt tacttttccc
     2761 ttcacaaaat actttcgctc ttttacaaag catagtattt ttatcgctcc ttttatctta
     2821 caggaaatac tatgcaaatt acgattttag acggcggaat tagccgtgaa ttaatgcgtc
     2881 gcaatgctcc atttcatcag cctgaatggt ctgctgccgc tttgtatgaa ggcccacatt
     2941 ttgtgcaagc ggtacacgaa gattttatcg ctcacggggc agaagtgatt actaccgaca
     3001 gctatgcggt tgtgccgttt cacattggcg aaaaacgctt tgcggcagac ggcaaaatgc
     3061 ttgccgattt agccggtcgc cttgccaaac aagcggtcaa aaattcagga aatattgcaa
     3121 ctcaaattgc aggctcactt ccaccaatgt ttggctctta ccgtgccgat ttaattcaaa
     3181 tggaacgctt tgctgaagtc gctcagcctt taattgacgg gctttcgcct tatgtggata
     3241 tttggctttg cgaaacccaa agtgcgatta ttgagccgat ttccatcaaa gcattattgc
     3301 cgaaagacaa ccgcccgctt tgggtctctt ttaccctcac cgatgatgaa ccaaccaccg
     3361 agccacaact tcgctcgggc gaaagcgtta aacaagcagt cgaagaaatg gtgaagttag
     3421 gcgtgcaagc gattttattt aactgctgtc agcctgaagt gatcggcgag gcattaagtg
     3481 taacccaaaa aactttagcc gaattaaaag ctacccatat tcgcacagga gcttatgcca
     3541 acgcctttgc tccacaacca aaagatgcca ccgccaatga cggtttagat gaagttcgcc
     3601 aagatttaac cctggaggct tatttaggct gggcaaaaaa atggacggaa caaggggcaa
     3661 ctattatcgg tggctgctgc ggcattgggg ttgagtatat tgaaacgctg gcaaaaaatt
     3721 taaaataagg aaatcgaatg tcaaataaaa aaataggatt aatttcactc accgccttag
     3781 tgctaagctc aatgattggc tcggggattt tcagcttacc gcaaaatatg gcagccgttg
     3841 ccggagcaga agccattacc attggctggc tgattaccgg tgtcggcatt atctttttag
     3901 gtttatcgtt tttctttatt tcccgcttgc gtccggattt agacggtggc atttacacct
     3961 acgcacggga gggttttggc gagctgatgg gctttatgtc agcgtggggc tattggctct
     4021 gtgccaccat tgggattgta ggatacctca ccgttgcttt tgaaggtttg ggtgtattta
     4081 ccgacaaccc gaacaccgtg attttcgggc aaggtaacac cctcgcctct tttattggat
     4141 cttcaatcat tgtgtggctg gttcacgccc tcatcgcagg cggtatcaaa gaagctgcct
     4201 ttgtaaactt aattgccact tttgtgaaag tcgctccgct cattctgttt atcgggttag
     4261 gcatttggta tttcgatgtg gatctgttta atagcgatgt taaagccacc gcacttaata
     4321 atagtgtaag cgaccaagtg aaaagcacaa tgttaatcac cttatgggta tttaccggtg
     4381 tggaaggggc ttctgtgctg tcggctcacg cgaaaaagcg ttctgacgtg ggactggcaa
     4441 ccgtattagg tattattatt gcacttgctc tttatgtggc aattaccatt ctttcactcg
     4501 gaattctgcc acgggaaact attgccaata tggcaaatcc gtcaatgggg ccgttgctcg
     4561 atgcaatgat gggcccaacc ggcaaagtga ttattactgc ttgtttaatt gtatcggtgc
     4621 ttgcctctta cattagctgg acgatgtatt cggcagaagt gccttatcgt ggctcaaaaa
     4681 acggggcttt cccgaaaatt ttagacaaag tgaataaaaa cggcacgccg attaactcac
     4741 tctggtttac cggctttatc gtgcaatttt gcttggtgtt ggtgtttgtt tttgagcaaa
     4801 gctataacac cttattgctg atttccacct cgatgatttt aattccctat ttcttaatcg
     4861 gggcttattt attcaaatta gcgattcaaa ccaacgccac ttggtacatt aaactcaccg
     4921 gctttatggc agccctttac ggattatgga ttgtctatgc cgcaggacta gaatatttgc
     4981 tgctttcggt ggtgctttat gtacccggaa ttttactctt cctctactcc aactataaat
     5041 tcaacggcag attaaccctt tcaaccgctg aaaaggtcat cttaatcgtg ctactggtaa
     5101 tttttggcta tgccgtgatt gagctgccag cactattagc agcataattc ccatcaaaaa
     5161 tgaccgcttg caagcggtta tttttctagg atcttctgca aagattcatt agaatagaaa
     5221 caacgtcaat aataaataaa aagaggagaa acaatgcaaa cttatcaaca taaagccctt
     5281 tgtcgggtaa gaaccattac cctttttctg agtttaacca aagataaatt gcagtgggaa
     5341 acggcattaa atgcggcaaa agcagaattt gatctattag ttcccgctat tcaaacacaa
     5401 ggctatcaca tacaatcgat tcgaatcgtt accaacagtt tcggggaata tcttgatctc
     5461 actaatattg aaacagcgaa acaggattta gcctatctta aacagctatt aacccaactt
     5521 aacgatagcg gtttacgcat tcgctttgcc attggtgagg caaaaacacc ccacgaatta
     5581 gcattactac ctgagctgat tttaaattat ggtgatttat ctaacgcttg tgtcaatatt
     5641 gaacccgatg aatttgggat tttagacaat gaaaccattt tacaatctgc tcaaattatc
     5701 aaacaaatcg ctgaaattac cccaagaggt gaaggcaatt ttaattttac ggtgaatttt
     5761 aactgtaaac cttttattcc ttattttccg gcaagctacc attcaagcaa gctccctaac
     5821 agttttgtga taggcctaga aacaccagat ctattagtag cggtgttaaa agagctgaaa
     5881 gccagcccac ataacgactt ttatcgccaa tgctatgaaa cgatgtctca agccttgcaa
     5941 tatcacgttg atgaagttct cgaagcagta aaatcggtac aacacaaatt acaatttgcc
     6001 tttgctggca ttgatagttc tgctgctccg tcaaaaaact gtgcctcaat gacagaagtt
     6061 tatgaattaa tgggcgtacc attttttggg gcagccggaa cagtagaagc ctcttcactt
     6121 ctgacaaaag tctttaaatc tatcaaacat gtaccgcttg tcggtttttc aggtttaatg
     6181 ttggcagtaa ccgaagattt aggcttagcc gcaggcacac acaaagccca attcgacatt
     6241 cgtgctttac taacttatag tgctgtttgt ggcattgggt tagataccgt accgatttcc
     6301 aatgaagcca ctgttgaaca aattgccgca ttaatgcgag acaccggcac aatggcattt
     6361 agactaaata aaccgcttac agtacgttta tttccaattc cgaataagag tgctggggaa
     6421 gtgacagaat ttgaaagtga tgatttatgt aactgccgaa ttttagctgt accttaaaat
     6481 aaaggctgat ggatatttcc atcagccttt caatttactt caccttcaat tttttaccta
     6541 ccgtgatctg ataatttttc aaattattca gctcactgat tttttgcggc gtagtaccgt
     6601 aagctctagc aatcgagtaa accgtttcat cttgttggac aatatggtag ccactgttag
     6661 acaccttaat ttctctttga gagtctgatt ttttagactg atttttttga tctttctcaa
     6721 gagctgtttt ttcttttagt tgctgctctt ttttcttatt ggttttagcc gaatcttctt
     6781 ttttatcctc ttttttgctc ttttctttca attttgtctt atctgattgc gtattcttct
     6841 cttgtttctc agaagcaggc tttttagtta aatcagcttt agcagttttt tcctctttct
     6901 tattttgctt atcttctttg tccgattttt tactgaccga agaactagca actgcatttt
     6961 ttgcccgata agcgactaat ccattataaa tggcccgagc aacttgttta cgataatttg
     7021 cactggctag ctttgcttcc tcggttgaat tagataaaaa tcccgtttcc accaatacag
     7081 atggaatatc aggtgaacgc agaacactta agcttgcgtg ctgaggagac gattttgcta
     7141 atgcagccac atttgacatt ttagctaaaa tgctcttgcc taattcatag ccggcacgtt
     7201 gagagtgaga gaactgtaaa tcaagcactg tttgatttaa ataacgttca ttgttgcttg
     7261 aaagcaccga accagccccg ccaagtaatt ccgactgctt ctcgtggtct tccaaccatt
     7321 tacccatttc atcgctagca cggctattag aaagtaccca aaccgaagcc cctttcaagg
     7381 aatcgccacg aggcgaagag tctgcgtgaa tagaaaccag cagatcggca cgatgcttac
     7441 gggcaatctc ggtacgttgc ggtaattgga taaaataatc tcccgagcgt gtcatcactg
     7501 ctttaaaatt aggatcggca tctaacaagg cttttagctc tttagaaatt gcgagggtaa
     7561 cgcttttttc caaaatcccc agatttttac caatagcccc cggatctttt cccccgtgtc
     7621 cggcatcaat cgccacaatg gttttggcaa atgtggaaaa actgaataaa ctcaatgtgc
     7681 taaaaacaat aaatctgata acttgcttca ttacctcccc tacaagcggt ctatttttga
     7741 tgaaaattta ctaatatatc tactgcagtt tgattttgcg gcaacaggct aatctgccgt
     7801 ccgtcattct tataatcaat ttggatcaca aaatcagcct ctggaatcat tcctttacct
     7861 ttaactgccc attcaagcaa acaaagcgtt tgtggtttga aataatcacg aattcccata
     7921 aactccagct cttcaggatc ggctaagcga tacaaatcaa aatggtaaag gctgaaaggc
     7981 ggaagttggt attcttccac cagagtataa gttgggcttt ttacattgcc ttgatgcccg
     8041 aaagcccgta cgatcgagcg ggttaaggtg gttttacctg ccccaagttc gccgtttagg
     8101 taaacaacca gcgaatgagc ttggtcttgc aataaatatt tcttaagttc taacgcgaat
     8161 gattgaccaa attccagcaa tttagtttca tcttcgcagt aaaaagagag agaatctgtc
     8221 attatttttg gtctagctga ataaaatgtt cccgataaaa tttcaattcg ttaatggatt
     8281 cacgaatatc gtccaacgct aaatgcgtat tgcctttact gaatttatct aaaatctccg
     8341 gtttccaacg gcgtgccagc tcttttaaag tactcacatc taagtggcga taatggaaat
     8401 aatcggctaa atcaggcata tatttataca aaaaacgttt atcttgagca atgctgttgc
     8461 cgcaaatcgg agaagcgcct tttggcaccc agcgttttaa gaagtctaaa gtttgcaact
     8521 ctgctgcccg ttcagtcaat ttgctcgctt tcactcgttc aatcagcccg ttagcggtat
     8581 gggttttgac gcaccaatca ctcattttct ctaataaatc atcggtttgg tgtaccgcaa
     8641 gtaccggtcc ttccgctaaa atatttaaat ccttatcggt cacaatggtg gcgatttcaa
     8701 taatgcgttc tttttccgga tctaaccctg tcatttcaag atcgatccaa attaaatttt
     8761 gttcgttttg agccatttta tttccttaca cttttgcaat ttttagggca tttttgaccg
     8821 cttgcggcac aaattggctg atgtcaccat tgtggcgata gatttccctt accatcgttg
     8881 aagaaaggta acgccattct attgaagggg gaaaaaaaat agtttctaaa tcgcccgata
     8941 atttgtaatt taactgagcg agttggattt catagtcaat atcatctgcc ccacgaatac
     9001 cacggattaa cgctttggca ttctgctgtt tggcaaagtc tgctaacaat ccactaaagc
     9061 caatcacctc aatattttgc cactgggtac agctttgttt aacaagctcc actcgttctt
     9121 caagactaaa aagcggctgc ttgcttgggt tttgagcaac ggcaacaatc acttttccaa
     9181 ataagtgaga ggctttgcaa attatgtcca aatgcccatt ggtaatggga tcaaaggtgc
     9241 ctgcataaat tacgttataa ctcattttat ttctctaaat aggaggctaa taaatccaaa
     9301 tggcgtttta atgccccttg attttcctgt aacacgctta agccggattt tgcaatttct
     9361 tgtccgattt ggggctgctt aagcaataat tgaatgctct cggtcaaagc ctcgactgaa
     9421 ctttcaattt caatcacgcc tttcacctca cgcaatttct caaagatttc agggaaatta
     9481 taggtgtaaa gcccagaaac caccggaata ttaaaagcga ttggttcaag tggattatgc
     9541 ccaccgtgtt tgaccaaact gcctcctaca aaagcaatgt cagacaaccc atacagtaac
     9601 atcatttccc ccattgtatc acctaacatt acttgagtat tttggcttaa cgttttattc
     9661 tcagtacgtt ttacataatt taaatctgat ttttgaatca gtagctcaac taaaccaaaa
     9721 cgctccggat ggcgaggcac taaaatcaac actaaattcg ggtaatgctc taataagagt
     9781 ttatgagcat ctaaaatcag cttctcttcc ccttcgtgag tactgccggc aatccaaatc
     9841 ggtctctctg ttaaattcag actagcttta gttttaatca ccgattgatg aagctgtggc
     9901 gtaatttcta aatcaaattt caggttaccg gtattaacca tttttgccgg tgcataaccg
     9961 agtgctaaat agcgatctcg gcttacctca tcttgagcca taatcagact aatttggttg
    10021 agcatatcct taatgctacc ttttacccag ccataacgct tcgcagaacg tggcgataag
    10081 cgggcattgg caatcacaaa tggaatttta cgaatattta ctttacgaat taaattcggc
    10141 caaagttcgg tttcaattac aatcatcaat ttcggatcga taaaattcaa aaaccgctcg
    10201 atagcatcag gtaagtcata aggcaaataa aaatgtgaaa cactattacc aaaagcagct
    10261 tgcacacgcc cagagcctgt tggcgttacc gttgtgacta tcaacggaag ttcaggatat
    10321 tgcttgctga ctgccttaat caaaagcgtt gcagcaatca cctcaccaac cgatgccgca
    10381 tggattacca ccccttttgc tttcggtttt tccgattcgt cataaatccc ataacgctcc
    10441 cataaacgtt tccgataagc cggttgttta cgccctttgt accacattaa tagcagaacc
    10501 acaggctgta atagataact taaacaaata tagagtaaac gtagcattta ttttccttat
    10561 accataaccc tcacctcttg tgggagagag tcaaatacgc caataaatcg ttcctctctt
    10621 gttcgagagg ggggaacaag cggttatttt taccaaaaat tttgcaatct atatcctcaa
    10681 agacaaaacc acggaataac cttaatccgt ggtttatctc gcatcattac gcttgatgtg
    10741 gattgcgggt attcgtattc actaagttac gcattaaaag tgcaaaatcc aactcaatat
    10801 ctgccggcac atctaaaaag acaaaatgcc cgtcaccgag tgctgcgtcc acattttcat
    10861 ttttgcggtt aagcatacgc tcgattttaa atacaatgtt gcctttaggg gtcatcattt
    10921 ccactgaatc gcccactaag aatttgtttt tcactgccac ttccgccaag ccttctgcat
    10981 tgcgtttgcc ggtaaattcg cccacaaatt gttggcgttc tgaaatcgaa tagccatatt
    11041 catagttttg gtattcatcg tgagtatgac gacgtaagaa gccctctgta taaccacggt
    11101 gtgcaaggct ttcaagagta tccattaaac tttcgtcaaa cggtttaccg gcagcggcat
    11161 catcaatcgc cttacgatac acctgagccg ttctcgcaca gtaatagaac gatttcgtac
    11221 gcccctcaat tttcagtgaa tgcaccccca tttgagttaa acgctcaacg tgttgtactg
    11281 cacgcagatc tttagagttc ataaaatagg tgccgtgttc atcttcaaag gcggtcattt
    11341 gctcatcagg gcgttgtgat tctgtataaa ggaacacttt atctgttgct tcgccattac
    11401 ctagagtagg agccacattt ttgacttcaa tttccggctc atacttaggc acaatttgcc
    11461 ctacctcatc aatcttacct tcttccattt tatattccca acggcaagca ttggtgcaag
    11521 tgccttggtt tgggtcacgc ttattgatat agcctgaaag caagcagcga cctgaatatg
    11581 ccatacacaa agcaccgtga acgaagatct caagctccat atccggcact tgttcacgaa
    11641 tttcttcgat ctcttcgagt gataattcac gggataaaat cacacgggtt agccccattt
    11701 gacgccagaa tttcaccgtt gcccagttta ccgcattggc ttgcaccgaa agatgaatat
    11761 ccatttcagg gaaattttca cgcaccaaca taattaagcc cggatcagac ataatcaaag
    11821 cgtccggctt catatccact accactttta gatctttgat gaaggttttt aattttgagt
    11881 tgtgtggcgc aatgtttacc accacataga atttttttcc taaggcgtgg gcttcatcaa
    11941 tcgcaacttt taaattggcg tggttaaatt cattattacg cacacgcaag ctataacggg
    12001 gctgtcctgc ataaatcgca tcggcaccat aagcaaaagc gtaacgcata ttttttaaag
    12061 aacctgcagg cgaaagtagc tcaggtttgg catattttaa agtcatatta ttctcttttc
    12121 tgataacaag tcaggacttc tcgacgtgag aagcgtaagc ggtatatttt ctaagaaata
    12181 ttgcgtgatg gcaagctaat ccattacaat ccgattttta tgtggggaac aatatgaaac
    12241 ttaaatacct tttagcaaca acattactgg ctttttcaac atttaccgcc gctcaaagca
    12301 tcaagacgga gatgatgcaa atgaatatgc aagcgaataa attgatgcgt gccgaatcgg
    12361 cagaagagtt tagcgaaatt gcgaatgatt tcattataat taccgagaaa accaaaggga
    12421 tttttcccaa tagcgtagaa ggcgataaag cagctcagga agattaccaa gccggtatgc
    12481 aaaaattaat tgatatggtt aatcaagcca gtgagaaagc tcaagcaggt gaattgcaag
    12541 aagcaaaaat gctgatttcc gagcttgaaa tgatcaagcg tgaatatcac aaaaaataca
    12601 aataattcaa cacattaaaa gggtgagcta aagctcaccc tttctattca aattccagtt
    12661 caaccgaatt ctcaccaaga agtgccttta attcgctaaa cattgcctca ttcgggctga
    12721 ttcgccactc tactccgcct ttgagcaata ccctaccttc cgggctttgg taataaaaat
    12781 gcagcggtaa agtgccttct ttatgtgggg tgatgatagc ggtcattttt ttaataaaat
    12841 ctgcagaaag ttgctctttg ctaatcgcta acgctaaact tttggcaaat cgaccccttg
    12901 cttcatcaag ggataacact tctcgagccg acattttcag tccaccgctg aaatcatcaa
    12961 actgtaccga acctgttgcc acaataattt ggtcttgttg catcaaatgc ccgaaatttt
    13021 ctaaggcttc cgagaaaagg gtaatgtcca atttccccga gcgatcttca atagtcgcaa
    13081 tcccaatacg gcttcctcgc ttggtaactg ccactcgaga tgccataaca attcctgaaa
    13141 ccgtggtcat ttgccctcgg aaagtcggtt gcaattcatt cagccgatta ggggcatagt
    13201 gggataattc tttgaggaat ctaccaatcg ggtgtccgct taaatacagc ccgagcgtgg
    13261 cacgctctcc atctaaaatc acttgctccg accattttgg cgtattggcg taagcatttt
    13321 gcacttcttc cggtgtctcg gtaagcacgc caaacatatc gctctgcccg agttcctcca
    13381 ttttagcgtg ctgatctgag gctttaagtg catcttccaa attcttcatc aaggcagctc
    13441 ggtgagggcc taatttgtca aaagcaccgg acataatcag gctttcaaag gtgcggcggt
    13501 tgattttttt cagatcgacc cgagcggtta aatcaaatag atctttaaat ttcccctctt
    13561 tttggcgagc tgccagaatt gcctcaatcg gtccttcccc aacgccttta attgctccta
    13621 gcccgtaaac aatttcgcct ttttcattta cgctaaaacg atgtttaccg ctgtttacat
    13681 caggcggcac aacggttaag cccatattca tacactcatc gtagaacccg acaattttat
    13741 cggtattatc catctctgag gtcattaccg cagccataaa ttctgccgga taatgggctt
    13801 ttagccaaag tgtttggtaa gaaaccaacg cataagctgc tgagtgagat ttattaaagc
    13861 cgtagccggc aaacttttct accaagtcaa aaatttgacc ggcaagttta ccgtcaatcc
    13921 ctttggcttc cgcccctttt tcaaacactt cacgctgtgc agccatttcc tccggtttct
    13981 tcttacccat tgcacggcgg agtaagtccg ctccaccgag tgtataaccg gcaagctctt
    14041 gtgcaatttg cataacctgt tcttggtaaa caatgacccc ataagtcggc tcgagaatag
    14101 gttttaagca ttcgtgttgg tattgcggat caggataaga aacctcttct ttgccgtgtt
    14161 tacggtcaat aaagttctgc accatacctg attccagcgg ccctgggcgg aatagtgcca
    14221 ccaatgcgat aatatcttca aaacagtccg gcttcaggcg agaaattaag tctttcattc
    14281 cccgtgattc aagctggaat actgctgtag ttttagctgc cagcaacaga gcaaaggatt
    14341 ttttatcatc aagcggaatg gtttcaatcc gaatcggctc tttgccttca cgagccaaac
    14401 gttcgttaat catctccaac gcccatttga tgatggtgag cgtacgcaag cctaagaagt
    14461 caaacttcac caatcctgca tattccacgt catttttatc aaaatgggta accgggtgta
    14521 agccctcgct atcgcaataa agcggcgaaa aatcggtaat cgcagttggg gcgatcacca
    14581 caccaccagc gtgtttacct gcattacgag ttacaccttc gagcttacga gccatatcaa
    14641 taaggtcttt cacctcttca tcggcttcat atagctcagg caattttggc tcagcggcaa
    14701 aggctttttc aagcgtcatt cctggatcgg gcggaatgag tttggagatg cgatccacaa
    14761 agctataggg gtgtccaagc actcgcccta catctcgaat gaccgctttc gccgccatag
    14821 taccgaatgt gataatttgc gataccgctt gtcgcccgta ggtttccgca acgtgttcaa
    14881 tcacacggtc tcgcccgtcc atacagaaat caacgtcaaa atcgggcatt gaaacacgct
    14941 cagggttgag aaaacgctca aaaagcaaat caaattccaa tgggtcaaga tcggtaatct
    15001 tcaacgcata agccaccaat gagcctgccc ctgagccacg acccggtcct accggaatat
    15061 cattatcttt ggaccattgg ataaactcca tcacgatcaa aaagtaaccc gggaacccca
    15121 tttggttgat cacatctaat tcaacttgca atctttcgtc ataaaccgac cgcttgttcg
    15181 ccctttcctc aggatcaggg aatagaaact ctaaacgctc ttctaagcct tctttcgatt
    15241 tttttaccaa gaaatcttcg gtggaaagct caccggtcgg gaaatttggc aggaaatact
    15301 cgcccaaacg cacggtaacc gaacagcgtt tcgcaatttc aaccgtgttt gccaatgcac
    15361 tcggtaaatc ggcaaacagc ttgcacattt cctcttcagt acggaaatat tgtttcggtg
    15421 agtatttttt cgggcgtttc gggtcgtcta gggtgtagct gtcgtgaatg gcaacccgaa
    15481 tttcgtgtgc gtcaaagtca tcttctttca agaagacaac atcatttacc gccactaacg
    15541 gaattgcatt tttttgtgaa aattcgaccg cttgtttgat atagcgttct tcgtctgccc
    15601 gtccggtacg gcaaacggaa aggtaaaaat gattcgggta atattgctga taaaaagcta
    15661 atttttcttc agcttcttgt cggttttctt tgagtaaggc tttacccaca tcgcccattc
    15721 gcccgccgga aagaatgatg atgccctcat tcagctctgc taaccattca cgttccacca
    15781 tcggaaattc cacatagcct tgctgatagg ctttggacaa aatttgggta atattatggt
    15841 agcctttgtt gttcttcgcc agtaatgtca gctcaaaata atcttcattg ccgctctcgg
    15901 ttctaacata aacatctgcc ccgataatcg gcttaatccc tgctcccaat gcttcgccat
    15961 agaatttcac caacccgcaa aagtttataa aatccgttaa gcccattgcc accatattat
    16021 tagcggcagc ggttttaact aaggatttta ccttagctaa accattaatc attgagaaat
    16081 cactgtgaac ttttaaatga acgaaacgac aatctgacat aggaatataa tctaagtaaa
    16141 gaagtttccc ctctttagta aagactgtca ggttctaaaa agtgaagcct tctgtgaata
    16201 atcccgttgg gcgaatgtta ttcgccccta caaacgagca ttattcttgc tcagagttac
    16261 atttaaaatc cgaatgtagg ggcgaattac attcgccctt tcagaaccta acaaccctgc
    16321 tttatctaaa gaagggagtt aaaattaatc acgttttttg cttaacagcc accaaacgat
    16381 gatcaaacag agtaggcttg gaattaatgc tccaaccggt ataggtaacc aagtggcaat
    16441 taagcttaaa ttgccaaaca caatatttgc cacatagaac ataaagccgg caacaatacc
    16501 aatcacaatt ttcgccccca tcgtactact acgaagcggc ccgaaaataa aggagatcgc
    16561 aagtagcatc atcaccgcca ttgagattgg ttggaatact tttcgccaga aggtgatctc
    16621 aaaacgtttc ggatcttgtc cggtatcttt taagaagccg acataatctg ccaagcctga
    16681 aatcgagagc gactccggtt tgagtgaaac aatgcctaat ttgctagggg ttaaactggt
    16741 ttgccaaact tgatctggct gtttagcttg ctggatctga ttttctccca cagtcgattt
    16801 ttccacttta gatagcaccc agcctttttc atcactgtaa ttcgcagttc gggcttttaa
    16861 aacagattgc aattcacgtt tgttttgtcc ttcgccgaat tgataaatca gtacgttatc
    16921 taagcttttt tcatttttaa tatgattaat atagataaat gaattgccat ctttcgccca
    16981 aaacccgtct tttgtggcaa gcattgagcc gccactttgg gcaatcgaac gcatattacg
    17041 ggcaaactgc tcggtttgtg gcacgcccca ttcgccgata atcatcgtaa aaatgactaa
    17101 cggtaaggca gttttcatca cggctaaacc aatgcggaaa cgggaaaaac cggaggcttg
    17161 catcaccacc aattcactaa ggctcgctag gttgcctaaa ccgagtaatg agccaagtaa
    17221 tgccgcaatc gggaaaaagg tttcgatatc tcgtggaata gttaaaaaag tatagtatgc
    17281 cgcttttaag ccatcgtaag atccacgtcc tacatcacga aactcttcca caaatttaat
    17341 aatcgcccca agcccaatca acataaacag ggttaaaaaa atcgcggata aaatcgtttt
    17401 gccgatgtag cgttctaaaa tattcattga gaaaaattgc attatgccac cgccttattg
    17461 gttaattttt ttgcaccaaa ttgatagcgt aacttagaca taaatttact atcccacgca
    17521 tttaaaataa cacctaaaac taaaaaggca actgatacca acggcattaa cacttccgca
    17581 ttcaacttgc ctgatgcccc tgacgatttt agcgagcttt gtagtaagaa atagattaaa
    17641 taaagcaata acgccggcag tagtttagca aaacgccctt gacgagggtt tacactactc
    17701 attggcaccg ctaataatgc cattaacggt acagctaaaa tcaaagcaag ccgccaatga
    17761 agctcggctt ttgcttccgg cgttttggtt tccattaatt tcttgaaatc ggctcgttgc
    17821 actaatttct catcagattc aacgtcttga tagcctaaat aagcagaata attctcaaaa
    17881 tgtgaaatac ggaaatcggc actttgtggt gtaccttcaa aacgcttgct ctctgccaag
    17941 gttaagactt gatccccatt tggcaaacct tgcaacgtgc cggattcagc aacaaccact
    18001 gaaggtttgt ttttcttctg ctgttccggc tggaaaacgt agatatcatt tagactgtta
    18061 ttttcaattt tatcaataaa taacacatag ccaccggcag acataaattg tccggccgaa
    18121 agagccgcaa aacgtgggtt ggctttcgct tccgctaaca tttcactctg tttattaatt
    18181 gcccaaggcg taagccaaaa cacgttataa accgctaatg cagtggtaaa aatcgagaga
    18241 aacatcgcca ctttaaccaa tagcccttgc ccgataccac aagcccgcat tacggtaatt
    18301 tcactttcgg cataaaaccg cccgagggtt aataacaagg cgataaacag tgagagtggc
    18361 agcattaatt gtgccattgt cggcatacct aagcctaata agctcaccac taaatctgcc
    18421 ggtactttac cactcacagc agaacttaga acacgcacta attgctgaca aaaaaagatc
    18481 agtaataaga taaacaatat cgccaattgg cttttaaata tctctttggt taaatatcgg
    18541 cttaagatca cgttttttct ctataacatt tacaaatctg aataccgcta aacacaagcg
    18601 gtctattttt gttaattttt tgcaaagagc gcaaaataac ttattcgaat cgctaataat
    18661 acctttttca tacaaaaaaa tcacctatag aaaatatcac gcacggcaaa accgtgcgta
    18721 agtattattg ttttttcgat tttttcgatg atgttgcttt atgagcttca agaattaatt
    18781 tcttaccttg gctatcttca atttcaatct taggtggtgc ttccgtattt tgatgaagga
    18841 tagctataat attttcacct tgtgcaatat cttcaaagtt tcctttcaca cgtaacttag
    18901 ccgcatcaac actagtgtca aatactaaga atgtacctaa tgcggtaact ctaatatttt
    18961 taagccctat attgtccttc gttaccgttt tatattgagg tgcttttttc ccttttgcag
    19021 ccataatctt ctcttgatta gtcgcaatat taagaatatt ttgaacttta gtcgcttctg
    19081 ctgtagattg tgcctgttct gttaaatttg gttctccatc aaaaataaca tccccaacaa
    19141 attgcacctc tttaggctca ttttgcaata atggtgcaac gtctttagct gaaacaacca
    19201 aaaataaccg ttcacctatt ttttcaaaac ggacatcaat attggttaat tgtgattcaa
    19261 tttgttcatt aattgtcttg atcgcagttt ctgtctcatt ttgaagcgat attttacgtg
    19321 taatatcaac atcataagca ataaaaccaa cttttaaacg ttgtgataac tgctgaagta
    19381 aattgcccac atttccatca taagaaagac gtaactttgc ctgctcatag cgactaattt
    19441 gagcatcatc attagcgaaa atagtgtttt gagtccctaa gccgattaga ccaacaacaa
    19501 acgttttacc ccaaaagcgc atcattttta tctccaatta ttctcttaaa tctaaaaaac
    19561 tcttttagta taaagtaagc aaactaaaag aaaaaccagt aaaattatct atacgaccgc
    19621 aaaaaacatt taatatttgc aaataaaaag taaattattt taaataatga tttacatcag
    19681 ggtatatcta tattttactt atcattgatg attatgttgg cattataaaa tctgtagcaa
    19741 taaaaattaa ggaggaaaaa tggaatttag tgtcaaaaat ggcagtgttg agaaacaaag
    19801 aaccgcctgt ttggttgttg gtgtctatga accccgccga ttatgttctg ccgcagaaca
    19861 gcttgataaa ttaagtaacg gctatatcag cacattactg agaagaggag atttagaagg
    19921 caaagcaggg caaaccttac tcttgcataa tgtgccgaat gtactcgctg atcgagtatt
    19981 attagtcggc tgtggaaaag agcgtgaatt aactgaacgc caatacaaac aaattattca
    20041 aaaaagtgta caaactatta atgaaaccgg ttcaatggaa gctgtcagct ttttaaccga
    20101 actgcacgtt aaaggtagaa caccttattg gaatgtgcga tttgcggtag aggcaatcca
    20161 agaacaacta tatgcctata acgatttcaa aagcatcaaa cctgaagttc gccgtgaatt
    20221 acgccgtgtg atttttaatg tcgcacaccg taaagatctt cctgatgccg aacgagcttt
    20281 agaacacgga aaagccgtag cacttggaat cagccacgct aaaaatgtag caaattgtcc
    20341 gcctaatgtg tgtaatcctc actatttagc cgaattggct aagggtttag cctacgacta
    20401 tcctgccatt tcaactacca ttgttgatga aaaacagatg gcagaattgg gaatgaatgc
    20461 ttacttagcg gtttccagag cctctgaaaa tgaggccttt ctttcagtga ttgaatataa
    20521 aggcaacccg aatgctgatg cgaagccgat tatcttagtc ggcaaaggaa tgacctttga
    20581 ctctggcggt ttatccatta aacctgcgga ggcgatggac gaaatgaaat acgatatgtg
    20641 cggagctgct actgtttacg gtacaatcaa agcaattgcc gagatgaaat taccactcaa
    20701 tgttatcggc ttactcgccg gctgtgaaaa tgcggttgat ggcaaagcct atcgaccggg
    20761 ggatattctc actacaatgt ctggtttaac cgttgaggta ctcaacaccg atgcagaagg
    20821 acgtttagtg ctatgtgatg ctctcagcta tgtagaacgt tttgaaccgg aattagtgat
    20881 tgatattgct accctaactg gtgcttgcat gattgcctta ggtaatcata acagcgggct
    20941 gatgtcacct cataacggtt tagcaaacga actcttagct gccgcagagc aagccgatga
    21001 caaagcgtgg cgtttacctt taggggaaga atatcaagaa cagttaaaat ctaactttgc
    21061 tgatcttgct aatatcggcg gacgtttagg cggagcctgt actgccggtc aattcctctc
    21121 taactttaca aagaaatata cttgggcgca tctagatatt gccggcacgg cttggaaatc
    21181 tggggcagcc aaaggggcga ccggcagacc ggtatcctta ctaacacaat ttttgatcaa
    21241 taaagcccag gtctaactct cacaagcggt ctgattttat cgagtttttg caaaaagaaa
    21301 atcagaccga tcctcttcat acgcccctat attcttttta gttatatcaa ataaattcca
    21361 gctactagaa aagcgattaa aaataagtat gataaatccc aatctcaata cttattaagg
    21421 aatatcacta tgactatcta tgcagacaac tcatactcaa tcggcaatac cccgctggtg
    21481 cgtttaaaga attttggcaa cggcaatatt gtggtaaaag tggaagggcg taacccaagt
    21541 tttagcgtga aatgccgtat tggtgcgaat atggtgtggc aagcagagaa agacggtatt
    21601 ctaaccaaag acaaagaaat tgtagatgca accagcggta acactggaat tgccttggct
    21661 tatgtagcag ccgctcgtgg ttataaatta acgctcacaa tgccggaaac aatgagtacc
    21721 gagcgtaaac gcttattgcg tggcttagga gtaaatttag tcttaaccga aggggcaaaa
    21781 ggaatgaaag gagcgattgc gaaagctgaa gaaatcgcgg cttccgaccc agatcgctat
    21841 gttaccttaa aacagtttga aaacccggca aacccggcaa ttcaccaaca aactaccggt
    21901 cctgaaattt gggatgcaac tgaaggtaaa attgatgtat tagtggcagg cgtaggaaca
    21961 ggtggcacta ttaccggtgt ttcccgtgct attaagcaag ataaaggcaa gcaaattatt
    22021 tcagtggcgg tagaaccgag tgaatcgccg gtcattacgc aaactttaaa cggtgaagaa
    22081 gtcaaaccgg gcccgcacaa aattcaaggc attggtgcag gctttattcc gaaaaactta
    22141 gatttatcac tgcttgaccg tgttgaacaa gtttcaagcg aagaagcgat tacaaccgca
    22201 cgccgtttaa tggcagaaga aggcatttta ggcggtattt catcaggtgc tgccgttgct
    22261 gccgcagatc gcatcgctaa actacctgaa tttgccgata aattaattgt agtgattctg
    22321 ccttcagcct cagagcgtta tttaagtacg ctactgtttg aagggattga agcgtaatat
    22381 taaattaata taaaaatgcc ggctgatgtc ggcattttta ttgcaaacaa gcggttattt
    22441 tttataaaaa atttgcaatt tgtctcctat tgcgttattc ttcgccacat ctttacggtt
    22501 ggccgtatct aatcaatatc aacaaatcca atcttaatta atcacaattt tacattcaaa
    22561 ttatgcatct tactcaactt aaaaacaccc ctgtttcaaa gcttgtggaa atgggtgaaa
    22621 atcaaatggg cttagaaaat ctggctcgtt tacgtaaaca agacatcgta tttgctattc
    22681 ttaaacaaca cgcaaaaagc ggtgaagaca ttttcgggca aggcgtgctt gaaattctac
    22741 cggacggctt cggtttcctc cgctcatcag atagctcata tttagccggc cctgatgata
    22801 tttatgtttc tccaagccaa atccgccgtt ttaacttaca aactggcgat aaaatagaag
    22861 gtaaaattcg cccaccaaaa gagggagaac gctattttgc cctactgaaa gttgattcag
    22921 ttaatgatga caaaccggaa gcctctcgca gtaaaattct ctttgaaaac ttaacccctc
    22981 tgcacgccaa ttctcgctta aaaatggagc gtggcaatgg atcaaaagaa gatttaaccg
    23041 ctcgtatttt agatttagcc gccccaatcg gtaaaggtca gcgagcgtta attgttgccc
    23101 cgccaaaagc tggtaaaacc gtgttactgc aaaatattgc acaaagcatc acccataatc
    23161 atcctgaatg tgagcttatc gtattattaa ttgatgagcg tccggaagaa gtaacagaga
    23221 tgcaacgcac cgtacgtggt gaagtaattg cctcaacctt tgatgaaccg gcaacccgcc
    23281 acgttcaagt tgcggagatg gtaatcgaga aagcaaaacg ctcggtagag cataaaaaag
    23341 atgtggtgat tttattagac tccatcactc gtttagcccg tgcctacaac accgttaccc
    23401 cggtttccgg caaaatcctt tccggtggtg tggacgctaa cgccttacat cgtccaaaac
    23461 gtttcttcgg tgcagcccgt aatgtggaag aaggtggcag cttaaccatt atcgcaaccg
    23521 cacttgtgga taccggatca aaaatggacg aagtgatttt cgaggagttc aaaggtacgg
    23581 gtaatatgga attacacctc tcacgccgta ttgctgaacg ccgtatcttc ccggctattg
    23641 acttcaaccg ctcaggtact cgtaaagatg acctcttaat ggcagcagac gaactccaaa
    23701 aaacttggat gttacgcaaa gtcctcaacc caatggacga agtagatgct atcgaatggc
    23761 taatcgacaa attaatgatg gcaaaaacta acgaagagtt tttcgagatt atgaaacgtt
    23821 cgtagaacat aaaaaaatcc cgcttaacgc gggattttta tcaatagcag ctgtcaataa
    23881 agtaactact taaaatcccc caactcaaac aaccccattg atctcgccac atttacataa
    23941 gtataaagtg cctcgatttt ggcttttccc ggtgttgccg gcttgccacc accaacggaa
    24001 tccatctcaa tcggataacc aatgtgctgt gcataacctt tgagaaccgc tgttgcacga
    24061 gggatatgtt gtaacgtacc gatacctaat actttcttgc cattataagt ttgcatcagc
    24121 ttgataatcc caaccgcatt tcccggggta tctctggcaa caggatcaag tagcaaacgg
    24181 tctttttcaa taccattttc gctaagccat tttgccatca catcagcctc agcaaattcc
    24241 gttttcacag caccgccact gacgataatt tttgcttgcg gaaatttttg tgccatctct
    24301 ttggttttct gtaatcgatc taacaacagc ggcgaaggtg tgccgtcttt gtttggcgta
    24361 gaaccaaaaa cggcaatcgt atcagggatc attgctgtct gtggttcatt accgtagctt
    24421 gccgccagcg tttgttcggt aaaggcaaaa aagtctgtca ttcgttgtgc gacttcggga
    24481 gcaagctgtt tcagtgcaga aagacgagcc gtttcttgtt cagtatcttc tagcaccctt
    24541 gaagctaata ctgtcatcgc aagagcgtga atatcacggg ggttttggcg caaaatttgg
    24601 tcgagctgag aaagtgcttc ccgatactct ttattgacga aatacgcctc tgcttgtaaa
    24661 cggtaagtgt taaggtaggt cggcttctct ttaactttct gatcaagcga agcatacatc
    24721 gcttgccaat accaacggcg gaaattcagc acatcctctt ttagataagg gtcatcaaca
    24781 tagtctggcg catattgaat aactaaatgc tcaatcggcg ctcctcgacc atcttcttta
    24841 ccttttggtg caggcagtac ttttgctaat acaaagttaa acgccttatc atattgactg
    24901 atattgtctt ggctcaaata atcagctggt atcgcccagc tatttacact tatcaaagaa
    24961 aggcttaaag caagggcaga aagggttgtt ttgatttttt tcatagaggc tcctatttac
    25021 cattgatagt gataatttgc gtgtaatccg tatgaacgct tcaatgcatc cccgtgtaac
    25081 attgatcctt cgattgcaaa ataatggcga tttccaactg cttgtatccc aatactgatt
    25141 acattccgat gacgatcaga taaactatct aaggtatcaa tatgacgatt tcgaaaacga
    25201 tagctaatat cagcataagg tttaagtttg attgcattga gttcaatcac ttttcctaaa
    25261 cgtagccctg tcccagccca aaacattcgt gctgatccag cttttgccca gcctaattgc
    25321 agctttggcg taatttgcca ttgatgactc atcacgatat ttcttccaat ttcactactc
    25381 agactgtatg cattattatc tcgttttgtt acaccagatt gattagtaaa atgactgtaa
    25441 ttaaaaaaat ttgtccaaaa cagaccactt gtaggacgat aaccagcata aataccagca
    25501 gatgtccctt tcactttatg cgtcctattc tcaatttgcc cctgactgat accaaatact
    25561 ccaccaatag accaattatg ggaaacctga tgatctagcc cgatatgtaa taagtgatag
    25621 tcttcggttg aacgattttt taaacgatat ttggatagac tatccgaaag ccataaattc
    25681 caatcttgtg tatgttctat ttctgctaac ctacggtaca gatcataagt tgcttgttcc
    25741 atcaaattaa gctgtacaac ataatgctcg gaaaaaggat tgttctgctt tattattaaa
    25801 cgactaaggg cttccgtact ctgttttaac tgctcttgcg ttttactaag ttctttattc
    25861 aattcctctt cagcttgctg atgagcctgt tttgctgttt ctaacgcctg tctggctact
    25921 tccagctcat ttgcagaatt ttctgcattt tttactgctt gatctcgctc agctaccaat
    25981 ttttctaaat aattctgctg tgctttttcc aacgcttctc tttgttcttt ttcagcttgt
    26041 tctttggcaa gcaaattctc aaaatcgccc aaggtaaata accccattgc acgagcaaca
    26101 ttaacaaatg tataaagagc ttcacctttt ttattttttt cattaggagg agaaccgcct
    26161 ccggcagaat caatttccaa ttcatatcca atggaatccg catagctttt caatacagac
    26221 attgctctcg gtaaatgtaa gatcgtaccg atccccaata cttttctacc tccatattcc
    26281 ttcataaaat caatgatacc gacagcattt cccggagtat ctcgtgccac atcatcaagc
    26341 aacagtctgc tttcatcaac gccattctct atcaaccatt ttttcattac atccgcttct
    26401 gcatagatat aacgaacagg tccaccactt aaaataattt ttgcattcgg aaatttctct
    26461 gccatttctt tggttttctc aagacgttgc aataatccct tgcttggagt accgtctggg
    26521 ttaggcgatt gcccaaatac cgctatggtg tcggggatca ttgttgtttg aggctcacta
    26581 ccatagctgg cagcaagcat agtgtctgta aaatgtagat attgctgcac cttttgcgca
    26641 atacttggag agatttgata aagcgctaat aaacgctcgg cttcagtatt aggattttcc
    26701 aatacccgac ttgcaaccac actcattgcc attgcatgaa catcattagg gttacgccgc
    26761 agaatttgat ccagttgaga taatgcttct tggtattgct tattgataaa gtacgcttcc
    26821 gcctgtaatc ggtaagtatt taaataatcg ggcttttgtt tcgtttttaa atccaatgac
    26881 gtatagagat cttgccactg ccaacggcga aaacgaataa catcctcttt aagatagata
    26941 tcattaagat aatctgatgc atatttcacc accaaattct caatcgcttc accacgccca
    27001 tctgcttttg caataggcgc aggtagtgga tttgcgagga aaaaattaaa acgggcatca
    27061 aattgccgaa tattatcgtt acttaaataa ccgtcagcat aagccgataa aggtaaggct
    27121 gaacctaata tcaaagcaag ataagaataa cgcaagcgtt tcattatgat ttctccttat
    27181 attgggtgaa gaagtattta taacttttta catctaacca acaaagt
//
LOCUS       DANLXK010000019        26589 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.019, whole genome shotgun sequence.
ACCESSION   DANLXK010000019 DANLXK010000000
VERSION     DANLXK010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 26589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26589
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..594
                     /locus_tag="PXD88_000681"
     CDS             <1..594
                     /locus_tag="PXD88_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL6280283.1"
                     /translation="GLISPGPDFFYVVRQSASHSVKSGVLAATGISIGIIFWAAFAIF
                     GLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQLTPLNPWQEIK
                     KGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYFCVVALLFSRR
                     PVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            706..1311
                     /gene="ruvA"
                     /locus_tag="PXD88_000682"
     CDS             706..1311
                     /gene="ruvA"
                     /locus_tag="PXD88_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL6280284.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            1448..2452
                     /gene="ruvB"
                     /locus_tag="PXD88_000683"
     CDS             1448..2452
                     /gene="ruvB"
                     /locus_tag="PXD88_000683"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL6280285.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(2551..3234)
                     /gene="artM"
                     /locus_tag="PXD88_000684"
     CDS             complement(2551..3234)
                     /gene="artM"
                     /locus_tag="PXD88_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL6280286.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(3234..3905)
                     /gene="artQ"
                     /locus_tag="PXD88_000685"
     CDS             complement(3234..3905)
                     /gene="artQ"
                     /locus_tag="PXD88_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL6280287.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(3905..4630)
                     /locus_tag="PXD88_000686"
     CDS             complement(3905..4630)
                     /locus_tag="PXD88_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL6280288.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(4656..5390)
                     /gene="artP"
                     /locus_tag="PXD88_000687"
     CDS             complement(4656..5390)
                     /gene="artP"
                     /locus_tag="PXD88_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL6280289.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
     gene            5598..7361
                     /locus_tag="PXD88_000688"
     CDS             5598..7361
                     /locus_tag="PXD88_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL6280290.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
     gene            7371..7940
                     /locus_tag="PXD88_000689"
     CDS             7371..7940
                     /locus_tag="PXD88_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL6280291.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            8166..9944
                     /locus_tag="PXD88_000690"
     CDS             8166..9944
                     /locus_tag="PXD88_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL6280292.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(9977..10321)
                     /locus_tag="PXD88_000691"
     CDS             complement(9977..10321)
                     /locus_tag="PXD88_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL6280293.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(10330..10878)
                     /locus_tag="PXD88_000692"
     CDS             complement(10330..10878)
                     /locus_tag="PXD88_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL6280294.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            complement(10905..11942)
                     /locus_tag="PXD88_000693"
     CDS             complement(10905..11942)
                     /locus_tag="PXD88_000693"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL6280295.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            complement(12084..12410)
                     /gene="grxD"
                     /locus_tag="PXD88_000694"
     CDS             complement(12084..12410)
                     /gene="grxD"
                     /locus_tag="PXD88_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL6280296.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            complement(12482..13087)
                     /gene="recR"
                     /locus_tag="PXD88_000695"
     CDS             complement(12482..13087)
                     /gene="recR"
                     /locus_tag="PXD88_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL6280297.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            complement(13095..13424)
                     /locus_tag="PXD88_000696"
     CDS             complement(13095..13424)
                     /locus_tag="PXD88_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL6280298.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            13564..14649
                     /gene="recF"
                     /locus_tag="PXD88_000697"
     CDS             13564..14649
                     /gene="recF"
                     /locus_tag="PXD88_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL6280299.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            complement(14840..15961)
                     /gene="tyrA"
                     /locus_tag="PXD88_000698"
     CDS             complement(14840..15961)
                     /gene="tyrA"
                     /locus_tag="PXD88_000698"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL6280300.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(16016..17074)
                     /locus_tag="PXD88_000699"
     CDS             complement(16016..17074)
                     /locus_tag="PXD88_000699"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL6280301.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            complement(17114..18151)
                     /locus_tag="PXD88_000700"
     CDS             complement(17114..18151)
                     /locus_tag="PXD88_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6280302.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            complement(18247..19686)
                     /gene="pyk"
                     /locus_tag="PXD88_000701"
     CDS             complement(18247..19686)
                     /gene="pyk"
                     /locus_tag="PXD88_000701"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL6280303.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            19813..20301
                     /gene="sixA"
                     /locus_tag="PXD88_000702"
     CDS             19813..20301
                     /gene="sixA"
                     /locus_tag="PXD88_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL6280304.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELIRVK
                     HT"
     gene            20525..21514
                     /gene="dusB"
                     /locus_tag="PXD88_000703"
     CDS             20525..21514
                     /gene="dusB"
                     /locus_tag="PXD88_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL6280305.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            21519..21815
                     /gene="fis"
                     /locus_tag="PXD88_000704"
     CDS             21519..21815
                     /gene="fis"
                     /locus_tag="PXD88_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL6280306.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(21920..24706)
                     /locus_tag="PXD88_000705"
     CDS             complement(21920..24706)
                     /locus_tag="PXD88_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL6280307.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRDHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(24800..26551)
                     /locus_tag="PXD88_000706"
     CDS             complement(24800..26551)
                     /locus_tag="PXD88_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6280308.1"
                     /translation="MFKLKSSFVLLNAALLAACSSNGGSFDVQSAKVESQTQTTPKKP
                     SLQDDNSNARRTVSASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDL
                     TKIPYEEEVKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILR
                     TGAHGYVYYLGIEPAKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPEN
                     SYDINVDDSEKPMGHTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKG
                     NRFSGKANAKNTDDPYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAK
                     KDDSESAFDAFKIKLKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFDDLV
                     TRTIDDKTYRVSVCCNNLDYVKFGTYSEGNNSNTAHQYLVGERTAVADLPTGTVKYRG
                     TWDGVMYSKSGSAGAESPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEG
                     NLKGNGFAGTAKTGNSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHSAET
                     DKDRVSITFGGKRQIEK"
BASE COUNT         7871 a         5709 c         5001 g         8008 t
ORIGIN      
        1 gggcttatca gccccggccc cgatttcttc tatgtcgtca gacaatccgc cagccactca
       61 gttaaaagtg gggtacttgc cgcaaccgga atctcaatcg gcattatttt ttgggcagcc
      121 tttgcgattt ttggtttagc gtggctcagt aatagtattg gctcgctgtt tcaatatgcc
      181 attatgatta tcggtggctg ttacctggtt tatattggct ctcaaatggt acgggtaacc
      241 gaaaatatca tttttgttga aaataaagct caactcacgc cgctaaaccc ttggcaggaa
      301 attaaaaaag gcttattaat caatatcttt aatgccaaag ctggcgttta ctttaccagc
      361 gtcatttcag cctatgtaga taatttaagc aataccctac aaatgttcga actacttcta
      421 ctctttgtgg taagtacctt tatttatttc tgtgtggtgg cactactctt ttctcgccga
      481 ccggtcagac tgttctatgc caaatatagt cgctatattg acaatatctc aggcgtaatt
      541 ttcatcttat tcggctcgat gctgatttat gaaggattca gccactttat ctaatcacaa
      601 gcggtctgat ttcactaaaa atttgcaaat tccgctatca ataaatagtg ttattttata
      661 cagtttctgc tatgctactg ccaattttaa ctctgagaga acaaaatgat tggacgatta
      721 cacggcaaaa ttattgaaaa gcaaccgcct gaaattttat tagacgtgca aggggtaggc
      781 tatgaactac tgctcccgat gaccagtttc tacagcctgc cacaaattgg cgaagaggcg
      841 actattttca cccatttagt ggtgcgagaa gatgctcact tgctattcgg ctttgcccaa
      901 aaacaagata gaactctatt ccgtgaatta attaaaacca acggtgtcgg gccgaagctc
      961 gcgttggcaa ttctatcagc aatgtcggtg tcgcaatttg ccaccgcgat tgaaaatgaa
     1021 gagctggcaa aattaaccaa aattccggga atcggtcgga aaaccgcaga acgcttattg
     1081 gtggaactca aaggcaaatt taaaggaatg gcacagagtg atttctttgt ggaagtatcg
     1141 cacgagcaaa ttgtggcaag taatacgcca gacccggcaa atgaagccct tgatgcctta
     1201 atagccctag gctacaaacc tgccgatgcg gaaaaaatga ttaagaaagt gaataaatcc
     1261 ggtgcaacga gcgaacagct tattcgtgag gcgttaaaaa attcattatg atattgatag
     1321 tatagggcga aagatatttc gcccctacaa tctcattttt aaaaatatat gtgtaggggc
     1381 aaatcaatat ttgccctcat gagtaatata gggtaatacc attccactac aacaataatc
     1441 taaatgtatg attgaagcag atagaatcat cagtgcctcg cctaagcgtg aggaagaagt
     1501 tatagaccga gcaatccgcc cgaaactgct tgccgactat gtcgggcagc cttctgtgca
     1561 tgatcaaatg gagatcttca tcaaagccgc taaattgcgg gaagaggcat tagatcactt
     1621 gctcattttc ggcccgcccg gtttgggaaa aactaccctt gccaacattg tggcaaacga
     1681 aatgggggtg aatattcgca caacttcagg gccggtgctg gaaaaagcag gcgatttggc
     1741 agcaatgctg accaaccttg aaccttacga tgtgctgttt attgatgaga ttcaccgcct
     1801 ttctccagcg attgaagaag tgctttatcc tgcaatggaa gattaccagc tcgatattat
     1861 gattggggaa ggacctgctg ctcgttccat caagctcgat ctaccgcctt ttacccttgt
     1921 aggggcaacc acccgtgccg gctcactgac ctcaccgtta cgagatcgtt ttgggattgt
     1981 acaacgctta gaattttact cagtggacga tcttactctg attgtcaaac gcagcgccga
     2041 ttgcttaaat ctcaatttgt cggcagacgg tgcttatgaa gtggctcgcc gctcccgtgg
     2101 cacaccccgt attgccaacc gcttactccg ccgagttcgg gattacgccg atgtgcgtaa
     2161 taatggcatt attacctcag acattgccaa acaagctctg gcaatgctcg atgtggattc
     2221 ggaaggcttt gattttatgg acattaaact gttgcaagcg attgtagaac gctttgatgg
     2281 cgggccagtt ggattagaca atcttgcggc agctatcggc gaagaacgag atacgattga
     2341 agatgtgcta gagccttatc tgattcagca aggctttcta caacgcacac caagaggcag
     2401 aattgctacc agcagaacct atgcccattt aggtataacc caaatagatt agtcatattt
     2461 ctaaaggcat tgatacataa ataaaaagcg gatagttagt actatccgct ttcatttgca
     2521 aaaaatcaat aaaatttgac cgcttatccg ctaggctttt tcagtctcaa aacgctcaaa
     2581 agctaatact ctgctttcta attttctgag aacgattgtc ataatgccgg taattaccaa
     2641 gtaaataacc cctgccatac cataaattga taatgcgtca tactctgtac cataaagctg
     2701 gcgagcatag cccataatat ccataatcgt aatggttgaa gcaagcgatg tgcctttaaa
     2761 aactagcaca atctcattac tataagaagg taaagcacgt tttaatgcgt aaggcactaa
     2821 aattttcagt gtatctaaac ggctcaaacc aagggctgcg caagtttccc attgcccctt
     2881 cggaatcgct tttaccgcac cgtggaacaa caatgtcgaa taggcagcac tgtttaacgc
     2941 taaagccaac attgcacaga accaagcgtc ggataataat acccaagccg cactttctgt
     3001 aatccattca aattgccccg ggccactata aatcaagaaa aattgaatta ataaaggcgt
     3061 tccggtaaaa agcgtaataa atccgtttac caaccacttt aacggacgat tttctaacga
     3121 gagaataaac gtaagaatga tcgctaaaat aaaggcaatg atgagcgcca caaaagtgag
     3181 ctgtaggctg gtgccaatac cctgtgaaat ttcaactaaa taatcccacc acattaagca
     3241 actcctcgct caaaacgggt aaatctacct tctaatactt taatcactcg ctggctaatt
     3301 agagtaatcg ctaaataaat aagtgctgct atcccatacc aagtaaaagg ttgatgagta
     3361 ttagcattaa ttaactccga ttgacgcatt aaatcatcta ccccaattaa cgataccaat
     3421 gccgtatctt ttaacagcac taaccactga ttgcttaagc ctggtaaagc gtgtcgccag
     3481 acttgaggga gaataatgcg aacaaatact tgcgctcggc ttaaccctaa cgccgtacca
     3541 gattcccact gcccaactgg aatagcttta attgcaccac gtaaagattg ggaagcataa
     3601 gcagcaaaaa taatacccag cgcaatagcc ccacaccaga aagcatttaa ctccgcaaac
     3661 tcatcggtga tcaagaaaat aacttggata agaccaaaat agatcaaaaa taccactaaa
     3721 atctccggca acccacgcaa taatgtaatt attatactag ttggtttacg gatacatgca
     3781 atcttactgg tttcaagtac cacaaaaaag attgacaata acattccaat caagaggctt
     3841 gccagcgcaa tccctaaggt catcagggtt gcgttgacaa gtaagtttaa aatatcgcta
     3901 gacattattt cccagccatc caagtattat aaatttgctc atatttacca tttgttttga
     3961 tggtagctaa agccgaattt aatttttcaa gcaatgcagt gttagattta tttaccgcaa
     4021 taccatatcc attaccaaaa aaggctttat cgactacttt ttcacccacg aaatctaact
     4081 ctttttcggt ttttagccac tctgccaata ctggtgtatc accaaatacc atatcaacac
     4141 gtccattttt taaatctaac actgctgatt gtaggctagc gtaaggtttt aaattatatt
     4201 gtttggcatt tttgcttaag tattgttgaa aagttgtacc attttgcacg ccgacattct
     4261 tagctgtttc cggtgtaaat ttccccttca ttgcgacata acttactgag ttttctaaat
     4321 aagcattggt aaaggcaacc tgtttttgac gcgcttcagt aatatccatg cctgaaataa
     4381 ttgcatcaaa atttttaaat tttaatcccg caattaagct atcgaatgat tgcgttttaa
     4441 attcgcaagt tgcttttagt tcttcacata atgcttttgc aatatctaca tcaaagccaa
     4501 taacttcacc tttttcattt gttgtttcaa aaggggcgta agaaggctcc atcgcaaaag
     4561 tgatagtttc ttgtgcattg gcagaaagcg ttgcaaatgc gatagcggaa gctaataata
     4621 attttttcat tgttgtgtcc ttttgttgtt atagattact ctgagtgaga taaatattga
     4681 gcaaattgct ctgttttcgg tgattcaaaa caacttgcat caccttgttc aataattgta
     4741 cctttttcca tgtacaccac tttgcttgcc accttacgag caacgcctac ttcgtgagtc
     4801 acaatcacct gagtaatgcc tgtagattgc aattctttaa taatatcaac tacttgtgca
     4861 gtaatttccg ggtcaagtgc tgcggtaggt tcatcaaata ataagacctg tggctgcatc
     4921 atcagtgctc tggcaatcgc cacccgttgt tgctgaccac ctgaaagatg cagtgggaaa
     4981 cgctcggcaa actcgctcaa acgcaaacgt gccaaatgtc cttttgctct ggcaaccgct
     5041 tcttctttgc ttaacccaag cactttcatc ggggcttcaa ttaagttttg cattacggtt
     5101 aaatgcggcc ataaatgata ctgctggaac accattccca cctcacggcg taacaaactc
     5161 accgctttgc tgtcggtttt agcagttaaa tcaaattgat gatttgcaat cgccaaagtg
     5221 cctgattgcg gtacttccat taagtttaag gttcgaatta gggtactttt acctgcccca
     5281 ctcgggccaa gcaatacaac agtatcccct ttttcaatct ctaagttaat gtcaaataag
     5341 gcttggtttg agccataaaa aaaattgaca ttttgaatac gaattgccat tcgttaaaat
     5401 cctactacat ttaaaataat gaatgaatac taattatttt tgcataacta tgcaatattt
     5461 ttttctttta gaacaaaatt tttgtaataa aatagcactt acatcgtcta acatcgttaa
     5521 atggcgtaat ttatttggaa tatgaatact gattacgcta taattttcgc cgagacaatt
     5581 aaaaatagga tttcaatatg attagatact ttttttcact cgtcttgagt ttattgatga
     5641 taaactcatc tcacgcaaat cttttctctc aacccaaatt cctaaaatcg gaagaagcct
     5701 ttgttttttc aatccaaaat gaaaatgaaa cattacagtt aaattgggat attgcagaca
     5761 attattatct ttataaaaaa gaaatccgtg tcacgccaca gaatattgag ataggcgaca
     5821 tcacttttcc cgctgccgag caatataacg atgaattttt cgggcaggtg gaaatctatc
     5881 gcaaccactt agggctaaag gtaccgttta aagaaattaa agacaacgcc tcaatcgtag
     5941 tggaatatca agggtgtacc aaaggctttt gctatccacc ggaacgggtt gagcttaaat
     6001 tagacagtat tctctctgct acacctgaag aactggcgca actggaagca caagcggtcg
     6061 aaaagagcga aaattttgca aaaaccgaca atatggcgcc ccctgaaaat gtggcaaaag
     6121 cagagcaaga tcaactggct gaaaatttag ctaacaatcg tttttccatt ttttggtttt
     6181 ttgtattagg cgttggatta gcattcactc cttgcgtact gccgatgcta ccacttctct
     6241 ctgcgattgt aattggaaat aagcaacgcc cttctaccgc taaagcattg ctgttaagta
     6301 ttgcctatgt gcaaggaatg gcagttactt acaccttact tggcttaatt gtagcggcta
     6361 tcggcttgcc tttccaaatc gccttacaaa gcccaccggt gttgattggt ttatctatcg
     6421 tctttattct gcttgcctgc tcaatgtttg gcttatacga aatccagcta ccaaatagct
     6481 ggcaacaaaa actcaatgca atgagccaaa aacagcaagg tggtgcgttg ggtagcgtgt
     6541 ttttaatggg gatgatcgca ggcttaattg cttccccttg tacttctgcc ccactttccg
     6601 gtgcgttgct ttatgtggca caaagtggcg atttagtcac cggtggctta gccctctatc
     6661 tactcgcact gggaatgggc ttaccgctga ttttgattac cttattcggc aacaaaattc
     6721 tgccaaaatc cggcgaatgg ctgttaaaag tgaaagctgc attcggtttt gttatgcttg
     6781 ccttaccggt gttcttatta agccgtgtgc tgccaagcca ctatgaaccg tttttatggt
     6841 cggcccttgc ggttgcattt ttgatctggt tggtggatgc gattccatct aattcaatca
     6901 cgaaaaagat catcaaagtc ttattattgc tcgctttagc cattgccgct aaaccttggg
     6961 cagatttagc ttggaacggc tcaaccactc aacagcaaac tacaccgcac ttagcgttag
     7021 aaaaaattca atcacttgcc gatttagaga caaaattgac cgcttccaaa ggtaaaaaag
     7081 tgatgctcga tctctatgcc gactggtgtg tcgcctgcaa agagtttgaa aaatacacct
     7141 ttagtgacca aaatgttcag aacaaactga atgaaatggt agtgttgcaa atcgatatga
     7201 cgaaaaactc ggctgaaaat atcgagctga tgaaacactt taatgtatta ggtttgccaa
     7261 cgattctgtt ttttgatgaa aacggcaatg aaatgagcca atctcgtgtt actggctttt
     7321 tggatgccga gcaattttta gcttggctga ataagttata aagaaaagaa atgaatcaag
     7381 aaaatcataa aattgaagac attattcgca tttttaatca atgcttttct gatgaatata
     7441 acactcgcct agagcggggg ggtaattatc cgatttactt gcccgaattt atggacgaag
     7501 atggtgtgcc gagcgaacgc ccttacaatg tgattttatt tgctcacggc tattacagca
     7561 gtgccttgca cgaaattgcc cattggctcg ttgctggaga agctcggcgt aaacttgaag
     7621 attttggcta ttggtacgag ccggacggac gctctgccga acgccaacgt gaatttgaaa
     7681 gtgcggaaat caaaccgcaa gcgattgaat gggtgttagc aactgctgcc ggttttcgtt
     7741 attttgctag tgccgacaat ctctcgggca atcccggcga taattcagcc tttaaacaag
     7801 cagtgtacga ccaagtcaag ctctatgcag aacgtggcta ccttcccaaa cgagctgaaa
     7861 ccttgcgtaa agccctctgt gctttttacg gtacacctga tgtgattgat ttagctcaat
     7921 ttgatattga acgaatttag ttgcaaaatt tttaacaaaa cagaccgctt gttgcatata
     7981 caagcggtct catttttgaa aaatattgca tttgtactaa acgataccct acttatctat
     8041 ttctattgcc ttgattactt cctatccaaa accctttgtt tcagagtaca actgtttctt
     8101 tttttcatat tttctattat attagcgtac aactgttcac tgaaatagaa agtaaaaata
     8161 agattatgag cactttagat tttcacttta tccaccgttt ccaccagcaa gttcaggctc
     8221 ttagccacca cccagcttta cgttttatgc aagatgaaaa atggtcagaa ataagttggt
     8281 tagaattaca aaaacaggtc aataatcttt cttatgcctt gctggcaaac ggtcttgccg
     8341 ttcaagagaa aatcgctatt tttgcacaaa atatgcctcg ttggacaatt accgatattg
     8401 ctgcaatgca aattcgtgcg gtagcagtgc cgatttatgc aaccagtacc accaaacaac
     8461 ttgaatatat cctgaatgac ggggatataa aaatcctctt tgttggcgat caggaacaat
     8521 atgatcaagc catagaaata gcgaacaact gttcgctatt aataaaaatt gtcgcgatga
     8581 aagactcaat agatctgcgt gatttcccta tcgctcaaca ttggcaagat ttcattaagg
     8641 ttaatcaaga tgaagctgaa ttaaccaaac gtttaaatga taaatgctta gaggatttat
     8701 tcactttaat ttatacctcg ggaacaaccg gtgagcctaa aggtgttatg ttagattatg
     8761 ctaatttagc tcatcaactt caggcacata ataaagcact ccctcatatt gacgaaaatg
     8821 atatatccct ttcattttta cctttatcgc atatctttga acgtgcttgg gtcacttatg
     8881 tgctatacag aggggcagta aattgctatc tggaagatcc tcaacaggta cgtcaagcac
     8941 tctcaacggt acgacctaca ttaatgtgtg ccgtaccaag gttctatgaa aaaatctata
     9001 ctgcggtgtg ggataaagtc caacaagcac cgatacatcg ccgagcgtta tttaaatggg
     9061 caatccgtac cgccgaagac aatctgtttg gtaaaaaatc agcctttttc caccgcttgc
     9121 agtacattat ggcagataaa ttggtgctag gaaaattacg agccttacta ggcggtcgta
     9181 ttcgtatgat gccgtgtgga ggagctaaat tagatccgtc tatcgggcta tttttccaaa
     9241 gtataggcat caatgtaaaa cttggatacg gaatgaccga aactactgcc actatttcat
     9301 gctggcagga aaaaggcttt aatatcaact caaccggtac cttaatgcct gatgttgagg
     9361 tcaaaattag tgaagaaaat gaaattttag tgcgtggagg cttggttatg aaaggttact
     9421 acaaaaaacc ggaagccact gctcaagcct ttactgctga aggttttcta aaaacgggag
     9481 atgccggtga actggattcg gaaggcaatc tttatattac cgatcgtatt aaagaattaa
     9541 tgaaaacttc aaacggtaaa tatattgccc cacaatacat tgaaggaaaa ataggtaaag
     9601 ataagtttat tgagcaaatt gcggtgattg ctgatgccaa aaaatatgtt tctgcgttga
     9661 tagttccttg ctttgatagc ctcgaagagt atgcaaaaaa gctcaatatt cgctatcaag
     9721 acagattaga actcattaaa cattatgagg ttgtcagaat gtttgaacaa cgcattaacg
     9781 aattacaaaa agaccttgca agttttgaac agatcaaaaa gtttacacta ctttcgcaag
     9841 catttagcac caaaatggaa gaaattacgc ctacattaaa attaagacga aaggtcattc
     9901 tagaacgcta taagcaacaa atcgaaaaaa tgtacgaatc ataatgaaaa acagagatcg
     9961 tctttctgct tttcatttat accgcagcgg taaccacaat ttcgactttc caatttggat
    10021 tggctaattt agcctccacc gccgctcttg gtggagcgtt atttggggca acccattcgt
    10081 cccacgcacg gttcatttcc gcataatctg ccatctcttt taaataaacc gtagccatta
    10141 gaattttact tttatcgctg ttggcttttg ccagccattt atcaatttct gcaagcactt
    10201 gctgggtttg ggtgtaagca tcggcggtgt catctaacgg cacttgccct gccaagtaag
    10261 ccacaccgtt atgtattgcc atttccgaaa aacggctacc tacttcaaaa cgttgaatca
    10321 tttttacctc tactgtttta tacattgccc tttataagct ttatgccctt ttatttcttg
    10381 cttgatatcc atttcttttt catcaaaatc agtgatgatt agttccactg ttttattatt
    10441 atcactatca gaaagtgagc taaataaatt ctcttcaaat tgttgtagct ccgcatcacg
    10501 ttgtaattca gaccatattt gtgaacgatg gctacgctgt acagattctg agacgatacg
    10561 ataaacaata gccccgtttt tcacactcca gcgcccattc tgttgtaatg aatactcaaa
    10621 aatcgacttt tgaatagggt aatatatacc accttgattg gtcatagtcc catttgtgga
    10681 aaatcgtaaa ttatccaccg tacgaatatt aaaatcatcg tactcaatag tgcattgcca
    10741 ttgcccaatc agttgattag gattagaaat tgttgaggaa caaccagcta atgcaagtgc
    10801 tgataaacct aaaaaaatta actttttcat attctctaaa taaagacaag cggttgaatt
    10861 tgcaaaaagt tttgccaatt cgaccgcttg ttacttgtgt aaaattactc tacttttaca
    10921 atccagcctt gcggtgcttc aacatcgcca aattgaatac cggttaattc tgcgtataaa
    10981 cggcgggtga caggccccac ttcggtttct gaatagaaga cgtggaattt gtctttatgt
    11041 tgaataccac caaccggcgt aatcaccgca gccgtaccac aagcaccggc ttcggcaaat
    11101 tggtctaact ggtcgatata cacatctccc tcaatcgctt ccatacctaa acgctcttga
    11161 gcaaggtgta gcaatgagta tttggtaata cttggcaaaa tcgactctga aatcggggtg
    11221 atgaatttgt tgtctttggt aatcccaaag aagttcgccg cccccacttc ttcaattttg
    11281 gtatgggttt tcggatctaa ataaatcgca tcggcaaatt tacgggtagt tgaactttgc
    11341 tcaaccgcca attcgtgcgg taataaactc gcagcgtagt taccgcctac tttcacacca
    11401 cctgttccca ttggggctgc acggtcatag tcggttgtaa tgaagtttga gggtgctaag
    11461 ccacctttga aatatgcccc caccggacag cagaatacgg aaaaaataaa ttcaggtgca
    11521 gctttcaccc caatattttc gcccacgccg attaaaaacg gacgtaaata aagggttgcc
    11581 cccgaaccgt aaggccctaa ccaatcttga ttggctttta ccactttttt acaggcacga
    11641 ataaacagct cggttggcac acgtggcatt aataaacgat ctgcggtgcg ttgcatacgc
    11701 tcggcatttt gatccgggcg gaataagtta attgagccat ctttacagcg ataggctttt
    11761 aacccctcaa aacattgttg cccatagtgc agggcagttg agccttcgtg aatatgcagt
    11821 gtattgtctt gagttaattc gccttcattc cattttccgt ctttccaatg tgcaatgaaa
    11881 cggtaatcgg ttttgatata agaaaagcct aaatttgccc aatctaactc ttttaatgcc
    11941 atgttgtgtc cttttatttt tatgttacga aataattttg acattctaaa acaaaatagc
    12001 tcttgaggta agaagtttaa gcctaaatcg caagaaaaaa ttaaggctct taaacataag
    12061 agccttaaca tactggtttg aaattatgct gcgtgttttg ctgcggtttc ttttaataag
    12121 gtttgaagtt cgcctttttg gagcatttct aatacgatgt cacaaccgcc aactaattca
    12181 ccttctaccc ataattgtgg gaaagtcggc cagtttgcaa attttggcaa ttccgcacga
    12241 atatccggat tggttaaaat atccacataa ccgaaaggca cttggcagtt aattaccgct
    12301 tccaccgcac gagcggagaa accacaagat gggaatttcg gtgaaccttt catataaagt
    12361 agaatcggat tttcgctgat ttgttgtttg attttgtcaa tagtttccat ttttagcctc
    12421 aaaataataa tttaaaatag ttgagtaatt atatcagaat taagttagca cagaaatagc
    12481 tttaaatatc aatatcacgc cgtcctgcaa aagagtgaga aagcgttgtg ccatcaacca
    12541 tttctaatga accaccgacc ggcacaccgt gagcaatacg agtagctttc acgttataca
    12601 ttctgcacat ttcagcaatg tagtttgcgg tagcatcacc ttcaatggtc ggattagtcg
    12661 ccaaaatcac ttcgtggaaa gattcctgtt ccaagcgttg ttgcaataaa tctaagccga
    12721 tttcacgagg gcctatacca tcaatcggcg acaaatgccc catcagcaca aaataacgcc
    12781 ctgaaaattg cccggtttgc tcaatcgctt gaatgtcttc cggcatttct accacacaaa
    12841 gttgcccgct catctgacgg cgaggatttt tacaaatcgt acactcttcc tcttcggtaa
    12901 aagtacggca cgatttgcaa tgtccgatat ggctcattgc ctcatttaag gcttttgaca
    12961 acgccacacc gccggaacga ttacgttgca acagatggta agccattcgc tgtgccgatt
    13021 tcggtccgac accgggcaat gcacgcaagg cttccatcaa attttcaagt aaaggactgg
    13081 tttgcatact taaattagaa tgggaatttc atacccggcg gcagttgcat accggcagtc
    13141 acacttgcca ttttctcttt ttgcatttct tctgcacggc gaaccgcatc gttaaaggca
    13201 gcggcaacta aatcttccac catctcttta tcatcttcca ttaatgatgg atcaatttca
    13261 attcggcggc aattgtgagc cccgttaata gtgactttta ccaaacccgc accagactcg
    13321 cctgttactt ctaattgggc gatctcttct tgcatttttt gcatacgctc ttgcatttgc
    13381 tgagcctgtt tcattaagcc gcctaagcca ccttttccaa acataatttt tcctcttaat
    13441 tttcaataaa aaataaacgg cttattctac tgaaccactt tctaatccgc aagcggttaa
    13501 tttttcccaa aattttgcaa atttgctaaa atggctactc tttttattcc tcgcacttta
    13561 actatggctt taacccgttt attaatcaac cattttagaa atatccaaca taccgattta
    13621 gcatttagcc cgcattttaa ttttttagtc ggggcgaacg gaagtggcaa aaccagtttg
    13681 ttggaatcaa ttttctatct tggacacggg cgttcattca aaagccatat cagcaaccgc
    13741 attatccatt acgataaaga cgatttcgta ctacacggta aaattgacga ggcaaagcac
    13801 agttggtcgg tcggcattca gaaatttcgc agtggcgaga cgacacttaa aatcaacggt
    13861 gaagacggca acaaaattgc cgatttagcc catttattgc cgatgcaagt gatcaccccc
    13921 gaaggcttaa ccttacttaa cggtggtccg agctttcgcc gtgctttttt ggactggggc
    13981 ttatttcacc agcaccctga tttctacgct cattggaaca atcttcgccg tttattaaag
    14041 caacgtaatt cggctttgca acaagtccgc tcttatcaag aactcaaagc gtgggatatc
    14101 gaattggtga aaaccactta tgccgtgagc gaaatgcgag ccgaatacgc cgaagcgtta
    14161 cgccccgaaa ttgagaaaac ctgccaattt ttcctgccgg aaatcgaaat cggcttgagc
    14221 tttcatcaag gctgggaaaa aggggcggat tatgccgaga ttctggcaca aggttttgag
    14281 cgggataaag ctcttggcta tacgatgatt ggagctcaaa aagccgattt ccgttttaaa
    14341 gcgaacggct taccggtgga agatgtgctt tcccgtgggc aattaaagct attgatgtgt
    14401 gcgttaagac tggctcaagg cgaacatttg gtcgcccaaa aacaacgcca atgcctattt
    14461 ttaattgacg attttgcctc cgaactcgac ccaaccaaac gtgagctttt agcacatcgt
    14521 ttaagagaaa gtggctcaca agtattcgtt accgccatta ctcaagatca gctcaatcaa
    14581 atgcaatggc aagacagaag cgatgattgt ttgtttacgg taaaaaatgg agaaattcag
    14641 ccacagtaag cggtcagatt tgggggcaat tttacaaaaa tgtttcttcc gatggcgcga
    14701 gcgtccacgc tcgtgccaaa acaagcggat aattttgcat aaaaatttgc aaaaaacagc
    14761 tctttattaa ccgcttgtag aatattaaat agcactagcg tggacgctag tgctatcaga
    14821 gcaaaacctc aacctacctt tactttcttg aatcgtgagc ctgttggagc aatactctac
    14881 tctctttcaa gaactgctcg gaataatcgc caaaccagtg atgcacttcc tcaaaagcct
    14941 tgataaaacc ggctttgtcg ttgcgtttaa agaaatctag cccttgttca aaactctctt
    15001 ttaaggtttc gatggtggct aaattttccg gtttatcggc aataatatcg gcatataagc
    15061 tgccgtcttg ggcaaataaa cgcccaatca ttgccaactc taagcggtaa atcggcgaag
    15121 atagtgccaa taattgagag agttgcaccg gctggcgaga aagatgtagc ccgaatgcaa
    15181 aagtggaaaa gtggcgtagg gcttgaatgt aggtcattgc attatcgtgt gctgctgcct
    15241 caatctcttc aatttttgcc ccccaaattt tgatttgctc aagcaaccat tgataacgtt
    15301 cagggaaacg cccgtggcag caagcgacca cttgctttgc ctgacttgca atatccggtc
    15361 cgaacatcgg gtgtaaaccg actaccgctc cattatgcac ttccagcatt ttttgcaacg
    15421 gctgatgttt gacggaggtt aaatccgcca aaatcatatt ttcggttaaa taagattgta
    15481 aacgctcgat ggttgctagg gtgttggcaa tcggcacaca cacaataacc acatctgcat
    15541 tggctaaaat ctgctcggca ttgtcccaat catcacgtcc taatgcctca acattatagc
    15601 cggatagggt taaataattg ccaaacagcc cacctaattt ccctttacca ccaacaatca
    15661 cgattttttg aatgtccgaa ttaactcttt tgaagccgtg tttgttttca ttggcataag
    15721 attcacgcat tatacggcgt agcacatctt caatgagatc cgccggaata ccttgttttt
    15781 ccgcttcaga gcggcgggcg gaaatcattg cggtttctcg ctccggagca taaacaggaa
    15841 tgccgtgttc tgatttgact ttcccaactt ctgccacaag agctaagcgt tcagaaagta
    15901 aggcgataag ttgttgatca acttgatcaa tttgttctcg taatggggct aatgggttca
    15961 tatttgttac caatttacaa gcggtcgttt ttatgcaatt ttttgcaaat tatctttaac
    16021 gcaacttttc agcaaagtga gttaaaagct cttctgtagt ttgccagtca atacaagcat
    16081 ccgtaataga aacaccgtat ttcatctgct cgaacggcaa ttctgatgat tgattacctg
    16141 cgtgtaaatt gctttcaatc attaaaccga taatcgaagt attgccagca agtagctgct
    16201 ctaatacatt ttctgccacc agcggttggc ggcggtaatc tttattggaa ttgccgtggc
    16261 tgcaatcaat cataatcgct gtaggtaagt ttgcttgttt tagcacccat tcacaatcat
    16321 caacatattg cttttcataa tttggggttt taccgccacg taaaataata tgtccgtctg
    16381 cattaccttt tgttttgagt aaagtaactt gcccctgttg gttaatgccg ataaagctat
    16441 ggctttgagc ggaagattgc atcgcattaa gtgcaacggc taaatcacca tctgtaccat
    16501 ttttaaagcc taccgccatt gacaaacctg aggctaattc acggtgagtt tgagactcag
    16561 ttgttcttgc tccaattgcc gaccagctga acaaatccgc taaatattgt ggtgtcatcg
    16621 gatctaaggc ttcggtcgct aacggcaagc caagttcggc taaatccaaa cagagttttc
    16681 gtgcgatacg taagccggtt tcgacatcaa aagagccgtc cattttcgga tcgttaatca
    16741 gccctttcca acctacagta gtgcggggct tttcaaaata aacccgcatc acaatataca
    16801 acttatcact cacttgctcc gaaagagctt ttaatttttt accatattca agggcagcaa
    16861 ctgggtcgtg aatcgaacaa ggtccaatca caatcagttg gcgtttatct cgtctgtgaa
    16921 taatatcgga aatcgttttg cgtgaacgtt caatttgatt gcgtaaatgt tccggcaacg
    16981 gaaattcttg ttttaactct tgtggggtca gtaatacctt ttcatcttgg atatttacgt
    17041 tatgcacgct atcttgatta aacactgtgt tcattttaat ttccttttgt gtaaatcttt
    17101 taatacacaa actttacaac gtaattttta aagtttcaac tactttttgt ttcacactct
    17161 ccaccgtgat tttttccatc caatttttgc ctttagcttt agttgcccaa gctaattgct
    17221 gccaaggttt accataagat tgcaaaatcg cttcatcata taccgaaacc actttgtcta
    17281 agtcattgta agggcctgtc cgtcttggat tatgaatcgc atacaaccca atcaccggcg
    17341 tattttgcgt agtggcgata tgggcaggac ctgaatctga agagatcacc aaatcaacct
    17401 gacgaataac acctgcaagc tgttttagcg tggttttacc ggcaatactc gtacaattcg
    17461 gggcaagttg ttgaattttg gctgcggttt ccatttcata ttgcgatgga gaacctgcaa
    17521 ttaatacatt gatattttgc ttacttagcc agttagcaat ttctgcatag cgttccggca
    17581 accaatcttt ctctttcttg cttgaacaag gagcaatgag tatatttttc cttgtaaaat
    17641 caataaattg tttgccataa gctaaatctt catcactcac aggtaaattc cattgtgccg
    17701 ataaatccat tatcccaatg gctttggcaa acatcatttg cccgtcaagc acgtgaggag
    17761 agtctgtcat ttctactttc tggttggtaa acaaccattg catttccctt gctctgtctt
    17821 gattaaagcc gatttttttc tttgctttaa tcccaagcga tagaattgaa gctcggaatg
    17881 ccgtttgtaa atttaataaa aaatcaaacc gcttgtgaga aagtttttgc caaagtgtaa
    17941 agataccttt ccaccctatt tttttatcat aaggaattaa gtgaacattc ggaatatctt
    18001 tcattaaata cgcttccgtt ttgccgataa tccaagtaat ttcagcacta ggatattttc
    18061 gttgaatagc ttgaataacc gctaaggtat ggcaaacgtc gccaatggca gaaaggcgga
    18121 gaatacagat agaaagaagt ttattgtgca taataatatc aatagttcag attacattaa
    18181 gctatattaa gacagaaaaa aagccacata aagtgtttta tgtggctttt gcgttaatcg
    18241 tttagattat tcaactctta agatacgaca agtatttgta ccgccagctt ttaattcatc
    18301 tccgtgagtt aaaagcacta attcgccggt taataaatag ccttgttctt ttaattgagc
    18361 aatggctttt ttcgcccctt ccattgtgcg gctgtcttca ttgtaatata ccggtgttac
    18421 accacgatat aacgcacaaa ggtttaatgc tttttggtta cgagacatcg cataaatcgg
    18481 taaacctgag ctgatacggc tggttaattt agccgtttcg cctgaatgag ttaatgaaat
    18541 aattgccgat acaccttcta aatggtttgc ggtgtacatt gcagacattg ccacagcttc
    18601 ttcgatagat ttaaacgtac cttccatacg gtggcgagaa atgttaatgc ttggcattgt
    18661 ttcagcacct aagcacactt ctgccattga ttttaccgtt tcaacagggt agtcaccgtt
    18721 tgcagtttcg ccggaaagca ttaccgcatc agtaccatct aacacagcat ttgcaacatc
    18781 catcacttca gcacgggtcg gcattggttt tttaatcatc gattccatca tttgggttgc
    18841 ggtaattacc acacgattta gcttacgagc acggcggatt aaacgttttt gcacacccac
    18901 taaagccgca tcaccaattt caacccctaa gtcaccacga gcaaccatca caacgtccgc
    18961 acctaaaatg atgtcgtcca ttgcttcttc agtcgcaaca gtttcggcac gttcaacctt
    19021 cgctacaatt ttcgcttcta agcctgcttc ttttgctaat tcacgtgcat aatgtaaatc
    19081 tgcacttgat tgagggaatg aaaccgctag gtaatccaca ccgattttcg ccgctaattt
    19141 aatgtcttct ttatctttgt cggttaatgc aggagctgat aaaccaccac ctaatttgtt
    19201 aatcccttta ttgtttgata acgggccacc aactgtcact tcagtatgaa ctttaacgcc
    19261 ttccacttcc aacactttca gttgaacatt accgtcatct aacaatagaa tatcaccagg
    19321 tactacatca tttggtaagt ttttgtaatc taaacctaca gcttcttgat ggccttctcc
    19381 acgcggtaaa tctgcgtcta aggtgaattt atcaccaata tttaagaaaa ttttaccgtc
    19441 tttaaatgtc gaaacacgaa ttttaggacc ttgcaaatcg cctaaaatcg caacgtggcg
    19501 acctaatctt gcagcaattt cacgcacttt attcgcacgt tcgatgtgat cttcaggaat
    19561 accgtgagag aaattcatac gaaccatatt tgcaccggca gcaatgattt tttccaacgt
    19621 attgccacga tctgttgcag gtcccattgt acaaacgatc ttcgttcttc tgagttttct
    19681 agacattatt tgactccatc aataaattta aaaattaagt taaaatcttt ctaagcatct
    19741 tgattatgcg ttaaacgagg gtcattatac gcctaaatca agagagttta aatacaacta
    19801 aaggagaatg ttatgaatat ttggattatg cgccatgggg aagcaggctt taatgcttcg
    19861 agtgatgctg ctcgctgttt aaccgacaat ggtataaaaa acaccatttc acagggaaaa
    19921 tggttaggag aacatttagc caaccaacaa attcaattag ataaaattct cgtcagccca
    19981 taccttaggg cgcaacaaac gcttgaaaat gtgcttattg gtatgcaagc ggtcaatttt
    20041 ccccaacatt ttaccaacct cattgaaagt tgggacgagg ttacgcctga cggaaacccg
    20101 catacagtag aaagctatct acatttttta agagaggaag gcgcaaaaaa tattcttctg
    20161 atttcacatc tcccacttgt gttcgatctc gtccaaattt taacgaataa ccaaagcaat
    20221 gtacaatttc caacttcaac catagcagaa attaattggg taaagacaaa agctgagcta
    20281 attcgagtaa agcatactta attctttcat ttttagaatg tcaatataaa aattttcaat
    20341 ttttttataa attgtcgaat ttatagactt ccaaaatacc taaaaaatgc gtatcatacc
    20401 agccctcaaa tcagtactaa actgatccat aagctattat aagaaagtac ggtatttacc
    20461 gtacttttta tttggatatc cctctggtta aaattacttc aaatttgtta ataaaaggtt
    20521 aaaaatgcaa ataggacaat atgcaatcaa aaatcgtatt ttccttgcac ctatggctgg
    20581 aatcacagat cagccttttc gccgcttatg tagccaactt ggagcaggtt taacattttc
    20641 agagatgatg tctaccaatc ctgatgtatg gcatactgag aaatcacgat tgcggttagc
    20701 acaccacgat gaaataggct taaatgccgt acaaattgca ggttctgatc ctgttgaaat
    20761 ggcaaaggct gcaaagataa atgttgagta tggtgccgat attattgata ttaatatggg
    20821 ttgcccggca aaaaaggtga ataaaaatat ggcaggctct gctcttttac gtaaccccaa
    20881 attagtcgct caaatattag attctgtagt caatgccgtt gatgtccctg tgacactaaa
    20941 aattagaaca ggttgggatc aggaaaatag aaattgtctg caaattgcga aaattgcaga
    21001 acaagccggc ataaaagctc tcactattca cgggcgtact cgaagctgtt tatttaatgg
    21061 cgaagctgaa tatgaaagta ttaaggcagt aaaagaagca atttctatcc cagtgatagc
    21121 aaacggagac attgactctg cggaaaaagc aaagtttgtt ctcgactata ccaaagccga
    21181 tgcaatcatg attgggcgcg ctagctttgg aaatccttgg atatttaagg aaattaatga
    21241 tttttttgaa actggattat cttcaccatt atcaattgat aaaaaatacc aattaatgtt
    21301 taaacatatt gaggatttgc accaatttta tggtgaagaa aaaggttatc gtattgcacg
    21361 aaaacatgtt ggttggtata ccgaaaaatt aaatccggaa tcaaatttta aacgcacttt
    21421 taatacacta agttccacaa aagagcaact ttatgcatta gaagattttg ttaaatcgat
    21481 tcatttagaa tctcaattaa gaaaagttgg ataaaaaaat gttagagcaa caacctacac
    21541 aaaacccatt aacagtaaca atgttaaatg cacaagcgca gcaggttaat aaaccacttc
    21601 gcgataatgt gaaagcagca ttaaaaaact atttatctca attaaatggt gaagatccaa
    21661 cagaattata cgaattagta ttatctgaaa tcgaacaccc aatgttagat atggtgatgc
    21721 aatatactcg cggcaatcaa actcgtgcag caacaatgct aggcattaac cgtggcacat
    21781 tacgcaaaaa attaaaaaaa tacggtatgg gttaatctaa ccgaccgtta aaacacgatt
    21841 ttaattcgta tgtaattagt tagagccaac aaaaaacgct gaatatacta ttcagcgttt
    21901 ttctatttta ttttgccgtc taaaacttca tttcaaatgc taaactgaaa tttctccccg
    21961 gagcggcaaa tcgagtgtaa ttgctacccc ggtcttggtt tactgcattc acaccggatt
    22021 ggcgcactga ttcccaagtg gaatatttac gattagtcac attataaatt cctccacgta
    22081 aggtgtagtt tttataattg atgtaaccgg taatatcatg ggtgtaccaa gaaccggtca
    22141 gtttgccacc taaatcaacg cgatgtatgc cgtgatgacg tgtgcctgcc acctcatcgg
    22201 cgtttttggc tttagaatag gtggtagtaa tgccaattcc ccatttttct tctgggtgat
    22261 cgtagccgaa tccaagcaca tagcgtgctg gctgaatcgc atctagaata ggatcgttta
    22321 cgctatcgag tcttgagtcg gttagtttcc gctcttttac ttttacacgg ttataagcaa
    22381 ctgatgaata aaaaccatct ggcagcatag ataaaatacc gtgtaagtca aatttagcga
    22441 ctaaatttat cccgtttagt gctacatctt gaatattatg gtagttatag aaacagtgtg
    22501 atttttgtat tattctttta catgctgtcg caatcatatt tttatagtta ttacggaaat
    22561 agctcacatc aaggtaacca aattgacctt taaagctaac tccaatctca tgattagtcg
    22621 atttttctgg ctctaactgg tggctacgtt gcgcgcgttg cacatattcg ttatctttaa
    22681 gcccaatatg atcacgttta ccataaagtt catagaatgc aggcactcta aaaccgtttg
    22741 aaatgcgata agaaagcgat acaaactctg ttggtttaag cgtaatccca ccattccaag
    22801 accaatttcg ataagttcgg ctaagtgtcc acggatcatc agatttaaat cgatgttgat
    22861 caaaacgcac ccctaatccc aaatccacat actcgcttat cactagatcg cggaagctaa
    22921 caaaatggct atcgccttta attttacgcg gttcacagtt taagatgtcg ccgcgtgtat
    22981 tattacacaa agataccgtt tcaatactgc gtggatcgcg gcgataaata tatggattat
    23041 ctaaacgccc tctaccgcgg tagctggtat aaccgccttt ggtatattgg gcagtcatat
    23101 ccccatgatc cataagcgaa ttaaatcgat caaagcccaa ccctaaattc agtttgtggg
    23161 tttgcttaaa tacgccttga ccagcattta gcgctttatc aaattctaaa tgaatgacac
    23221 gatgcttttc ttggtaatta ttacgctcag ttcgatacat agaccaagat ttatccaaag
    23281 tcgggcggca atttttatct accacaggat aatcgctaca atgcaagcga tgtagccggc
    23341 tatatagttc aatatcttgt ttatccgcac tgagtttaat gctatccaac cagcgattat
    23401 tctctggttt atatttatag gtgaatccta aacgacgttt gtggtgacgt tcatcaaaaa
    23461 acttcacatg gctatagcgc aacccataag ggatccttgg cttgaacact aagccatcta
    23521 aaatattatc cccttcataa acatagttcc taagtgataa gttaatatcg tcttttgtat
    23581 agtaagctgg cgtttgcata tcacggatat cgtagcgttg ttttgtatct tctaagattg
    23641 cgccaagata atgagacgag ttaaagtgat agccaaactt cataaaaaca gaattactct
    23701 tgtaatctaa agggtttggt gcaatgcgat ctttaccggt atattcttgg gctgagagct
    23761 gctcagtgcg ataaggaatc tgctcaagct gtttgcgctc ttcaggcgta tattccggaa
    23821 atgttctcac tgggaaatta tcgcggttca acttaaccct tgcacgagga gtacaatcta
    23881 atgttgggca agtatcttcc acaataaaaa aagatcctcc aggagcattc tgtgcggaat
    23941 ttgggtaaag atcgtagcga ttttcaaagc cggttatacg ccgaatatta tgttttaatt
    24001 tatttgcctc ggaatgaatt ttggtctctt taccgtgtcg gtgagttgca ataacaagtg
    24061 cttcaaaacc acccgcctca ccagccgctg cgatagactg taaaaaatgg ctatttttgc
    24121 tggcataaga ggtcttacta tctaagcccc aatgctgccc ctctttaata atatcctgcg
    24181 catctttagt acgaaaacca atagcaccac ctagcgcacc agagccatat tccgcagaac
    24241 ttgctccttt gcttaactca attgaacgaa tgttttcata ctcaatctca ttaattgcac
    24301 caccattagc atctgaacct agcgtatgat aatgctgcgc ttgtggtagc ccatcaacaa
    24361 gtaagctgac acggttttta tctacacctc gaatggcata gccactactt gcaccgcgac
    24421 cttgttccac caccgaaata ccagggtcat agcgagttaa atcacgaata ccaagaattt
    24481 gatttttact catttcgtga taatttttca ctactttccc caagccagtt acttcgtttt
    24541 gacgttcgtg agcataatgg ctctctgtca caataacttc atccagaaca gctagatcgt
    24601 tattttcttc tattttttta ttttcagtcg cagcaccgta tgaatgagaa agagcaaata
    24661 acactgttaa ggcaacaggt gaatagcgaa aatgatgata tttcattatc attagatagg
    24721 gtctccttta tttaaatttt gcaaattttt ataaaaaatt gcccgcttgc tatctacaac
    24781 cagcaaaggg gaattatgat tatttttcta tttgacgttt tccgccgaat gtaatactga
    24841 ctctatcttt atccgtttct gcactatgta caataccacc taattccgtc gccttagggc
    24901 cataaaagcc cccttcaaat tgagtattta tatgcactac cgtgccacca ttcgtacttt
    24961 tcggatcaag attaaaacca gaattgcccg ttttggctgt gcctgcaaaa ccattccctt
    25021 tcagattgcc ttcaagtgtc agcattgggc gttcttcaac accatcatta gcaatcagct
    25081 tgccattaat ttttttattg acaaaatcta catcgaatag tgaacgagta ccactttcgc
    25141 tgttacttgg cgattcagcc cctgccgagc cagatttact gtacattacc ccgtcccaag
    25201 tacctcgata ttttactgtc cctgttggca aatctgccac agctgtacgt tctcctacta
    25261 aatattggtg agcagtatta ctattatttc cctcgctata agtcccaaat ttgacataat
    25321 ctaaattatt acagcagact gaaactcgat acgttttatc atcaatagta cgggtaacca
    25381 aatcatcaaa tttcatctcg gcaaagcttt ttttgccttc cgcaataagt ggaatctgct
    25441 tattgttaat aatcaaatgt gtcgcattcc cgaaagtatc catctcagat ttatttaaat
    25501 ctttaagttt aattttgaaa gcatcaaagg cagattcact atcatctttt ttagcatctc
    25561 gtttgccagc aaaaacaaca aataccgact tatcatcagc taagaattta ccggcaagtt
    25621 cttgagcctt cccaccaaaa aatccacctt caagtgtcgt agagctttta ccaaaataag
    25681 gatcatcggt attttttgcg tttgctttac cagaaaagcg attaccttta atttttgcat
    25741 caatatcgta aattgttgta attttttgct ctttgctacg actaacatac ccattacgaa
    25801 ccaatgttcc agttaaagtt ttattagcaa aatcagccgt aaattctcct gtatgcccca
    25861 ttggtttttc agaatcatca acattaatat cgtaactatt ttccggtgtg gcgccaatat
    25921 tgatgcctgc ggaattagaa aaatatttac tatctctccc ttttctcgca tcggtagtaa
    25981 aatcccaata tcctttataa gtagcttttt gagtaggtat tgcttttgcc ggctctatac
    26041 ctaaatagta aacataccca tgtgcacctg ttctcaaaat ttctttaggc tttatttcag
    26101 gttttgcacc agaatgcaga acatagccag aacgaacaaa attaaaatct ctagtataca
    26161 acttatgatt tctatcatga gtatggctaa atccatcagc actactaccg tacgctttaa
    26221 cctcttcttc atacggaatt tttgtcagat ctccagtaat ctcttttata tcaccaatag
    26281 gggctacatc ttccttcccc tgcggaaaga gattacgacg cggaattttg gctgaaaaac
    26341 caaaccccgg ctgcaataaa gcttcagttt cagaagcgct tactgtacgt cttgcgttac
    26401 tattatcatc ttgtaaactt ggctttttgg gggtagtttg cgtttgagat tcaactttgg
    26461 cagattgaac atcaaagctt ccaccatttg aggaacaagc agcaagtagc gccgcattaa
    26521 gcagtacaaa actactttta agtttaaaca taatgtctcc ttttaattta taaaatgata
    26581 atcattata
//
LOCUS       DANLXK010000020        24923 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.020, whole genome shotgun sequence.
ACCESSION   DANLXK010000020 DANLXK010000000
VERSION     DANLXK010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24923
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(60..623)
                     /locus_tag="PXD88_000707"
     CDS             complement(60..623)
                     /locus_tag="PXD88_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL6280309.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            773..3370
                     /gene="mutS"
                     /locus_tag="PXD88_000708"
     CDS             773..3370
                     /gene="mutS"
                     /locus_tag="PXD88_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL6280310.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            complement(3418..4872)
                     /locus_tag="PXD88_000709"
     CDS             complement(3418..4872)
                     /locus_tag="PXD88_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6280311.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(5096..5734)
                     /locus_tag="PXD88_000710"
     CDS             complement(5096..5734)
                     /locus_tag="PXD88_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL6280312.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(5822..6769)
                     /locus_tag="PXD88_000711"
     CDS             complement(5822..6769)
                     /locus_tag="PXD88_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL6280313.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(6786..7631)
                     /locus_tag="PXD88_000712"
     CDS             complement(6786..7631)
                     /locus_tag="PXD88_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6280314.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(7643..8914)
                     /locus_tag="PXD88_000713"
     CDS             complement(7643..8914)
                     /locus_tag="PXD88_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL6280315.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(8917..9396)
                     /locus_tag="PXD88_000714"
     CDS             complement(8917..9396)
                     /locus_tag="PXD88_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL6280316.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(9457..10440)
                     /locus_tag="PXD88_000715"
     CDS             complement(9457..10440)
                     /locus_tag="PXD88_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6280317.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(10469..11494)
                     /locus_tag="PXD88_000716"
     CDS             complement(10469..11494)
                     /locus_tag="PXD88_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL6280318.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            11658..12419
                     /locus_tag="PXD88_000717"
     CDS             11658..12419
                     /locus_tag="PXD88_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL6280319.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            12449..13633
                     /gene="uxuA"
                     /locus_tag="PXD88_000718"
     CDS             12449..13633
                     /gene="uxuA"
                     /locus_tag="PXD88_000718"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL6280320.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            13684..14553
                     /locus_tag="PXD88_000719"
     CDS             13684..14553
                     /locus_tag="PXD88_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6280321.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            14721..15035
                     /gene="rsfS"
                     /locus_tag="PXD88_000720"
     CDS             14721..15035
                     /gene="rsfS"
                     /locus_tag="PXD88_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL6280322.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            15112..15579
                     /gene="rlmH"
                     /locus_tag="PXD88_000721"
     CDS             15112..15579
                     /gene="rlmH"
                     /locus_tag="PXD88_000721"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL6280323.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            15603..17552
                     /gene="mrdA"
                     /locus_tag="PXD88_000722"
     CDS             15603..17552
                     /gene="mrdA"
                     /locus_tag="PXD88_000722"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL6280324.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            17545..18672
                     /gene="rodA"
                     /locus_tag="PXD88_000723"
     CDS             17545..18672
                     /gene="rodA"
                     /locus_tag="PXD88_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL6280325.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            18764..19423
                     /locus_tag="PXD88_000724"
     CDS             18764..19423
                     /locus_tag="PXD88_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL6280326.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            19437..20615
                     /locus_tag="PXD88_000725"
     CDS             19437..20615
                     /locus_tag="PXD88_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL6280327.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            20783..21082
                     /locus_tag="PXD88_000726"
     CDS             20783..21082
                     /locus_tag="PXD88_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL6280328.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            21144..21797
                     /gene="lipB"
                     /locus_tag="PXD88_000727"
     CDS             21144..21797
                     /gene="lipB"
                     /locus_tag="PXD88_000727"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL6280329.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            21812..22819
                     /gene="lipA"
                     /locus_tag="PXD88_000728"
     CDS             21812..22819
                     /gene="lipA"
                     /locus_tag="PXD88_000728"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL6280330.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            23006..24109
                     /locus_tag="PXD88_000729"
     CDS             23006..24109
                     /locus_tag="PXD88_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6280331.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(24200..>24923)
                     /locus_tag="PXD88_000730"
     CDS             complement(24200..>24923)
                     /locus_tag="PXD88_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6280332.1"
                     /translation="VVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTID
                     FDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEAV
                     DIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINLL
                     EYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDSI
                     MSILRFYMMETARRLSARFANV"
BASE COUNT         7255 a         4894 c         5514 g         7260 t
ORIGIN      
        1 ttcaatcggt aggtataaat ggctcggttg tggttaaaac aaccgagtat tgaggctcac
       61 tagagaagta acatactgcc ccatttgata atatcgaaga agaatttatt atcattggtg
      121 gcaactttat cgcctgattt cccttcttgg ctattggttt cttcgatcat accgctttga
      181 tactgccctt ttaccactgc caaatcattt tttgcattgg tgcgtaaggt cgcacattgt
      241 tttttcggta acgcttcaac cgcttcgtta tttttcagtt ttttgaataa atattgagcg
      301 taacccattg atttttcatc attttgaatg atttttacat actgctcccc gataatctct
      361 tcaagcggat agaaaaatac atattgtgag aaaatataag aatcttcttt ggaaaaatgc
      421 tcttgctgaa tacgggttaa attggggtag atacactgtt ttgcctgttc gctggcaatt
      481 acccattttt gagcattttc ttccgaaagc acataatcgg cattggcaaa ttcgcccggg
      541 aatgcttccg gttgttgcgg ttcattgctg ctacaagccg ccaataataa gcctgtagaa
      601 agtagcacta tttttcttaa cattctgacc tctgttttaa aaatttggtg cattgtaaca
      661 aaaaaacagc ggctgaccat tgcaaatttt cagcgaaaaa tgaccgcttg tttttatccc
      721 ttggctgaat ctgttaaact atcagcaatg atttctcaca ataaatagac tgatgacaca
      781 agatttctcc acccatacgc caatgatgca acaatatttg caactcaaag ctcaaaatcc
      841 ggacatacta ttgttttacc gaatggggga tttttatgag ctgttttatg atgatgcgaa
      901 acgagcggca gcattgttgg atatttcgct caccaagcga gggcaatctg ccggtgagcc
      961 gattccgatg gcgggtgtgc cttatcacgc agtggagggg tatttggcga aattggtggc
     1021 gttgggggaa tcggtagcaa tttgtgaaca gattggcgac ccagcaacct caaaagggcc
     1081 ggtagaacgc aaagtggtac ggattgttac gccgggaaca gttagcgatg aggcattgtt
     1141 acccgaacgc caagataact tggtggcggc agtttacgaa gaaaaaggca catttgcgat
     1201 tgctacgcta gatatgacct ccgggcggtt tttaatcagt gaacttgcta gcaaagaggc
     1261 tctatccgcc gagttacaac gtgtacaacc ggcagaaatt ctgtatgcgg aagatttttc
     1321 cgctgcctca attttaacga attacaaagg gttacgccgc cgtccggtgt gggaatttga
     1381 gctggtaacg gcgattcagc tgctaaatcg ccaattcggc acgcaaacac ttgccggatt
     1441 tggggtggaa aaagcggtgg tggcactttg tgctgccggc tgtgtcttgc attatgccca
     1501 agaaacgcaa cgcaccgctt taccgcacat taacgcaatt catttggcac aacatagcga
     1561 tactattttg ctcgatgcag ctactcgtcg caatttagag ctgacccaaa acttagcggg
     1621 tggcacggaa aacacgctgg cggcggtgtt agataaatgt gtgaccccaa tggggagccg
     1681 tctgctcaag cgttggattc atcagccgat tcgagattgt ggtaaattac aagcccgaca
     1741 aaaggcgata acagcattga tacaatatga gcgaatgtcg gatttacagc cgttattaca
     1801 acaagtcggc gatatggagc ggattctcgc ccgagtggcg ttgcgtacgg ctcgccctcg
     1861 tgacctcacc cgactacgca ctgcattggc tcagttaccg gaaattgcaa aaaattcaca
     1921 aaatctgacc gctagtatcg atcagctttt ggctcaactg gcggatttca gcccgttaca
     1981 cgatttgctg gagcgggcga ttatcgaaaa cccaccacaa ctcattcgtg atggtggggt
     2041 gattgcagaa ggttataatg ccgagcttga cgaatggcgg caactttcgg acggggcaac
     2101 gcaatatctg gaaaatttgg agatcagaga acgtgaaagc accggcattg attcgctgaa
     2161 aatcggcttt aatgcggttc acggctatta cattcagatc agccaagggc aagcacacaa
     2221 agccccgatt cactatgttc gccgccaaac gctcaaaaat gcggagcggt atattatccc
     2281 tgagctgaaa acttacgaag acaaagtgct gaaagcaaaa ggggcatcgc ttgcccttga
     2341 aaaacagctt tatgatgaac tgtttgatgt gttaatgcct cgcttaggcg aattgcaatt
     2401 agcggcgatg atgctgtctg aacttgatgt cttaaccaac cttgccgagc gagctgatag
     2461 tttaggctat gtttgcccga gctttagccc gatgcgaatg gtgaatatta aaggcggcag
     2521 acacccggtg gtggagcagg ttttaaccga gccgtttatt gccaatccgg tgtttttaaa
     2581 ttcccaacgg catttattga ttgtgaccgg cccgaatatg ggcggtaaaa gcacctatat
     2641 gcggcaaatt gccctcatta cattgatggc gtatatcggc agttttgtgc cggcagaaag
     2701 tgcggaaatc ggcccgattg accgtatttt cacccgaatt ggggcaagcg atgatttagc
     2761 ttcagggcgt tcaaccttta tggtggaaat gaccgaaatg gcgaatattc tgcatcaagc
     2821 caccgaaaac agccttgtgc tgattgatga aatcgggcga ggcacttcta cctatgacgg
     2881 cttatcactg gcgtgggcgt gtgccgaatg gctggcgaag aaaacccagt cactcacttt
     2941 gtttgcaacc cactattttg aacttaccgg cttgccgaat cagctcaaag gggtggcaaa
     3001 tgtgcattta gacgcgcgtg aacatcaaga cagtattgtg tttatgcact cggtgcaaga
     3061 gggggccgcc agcaaaagtt acggcttggc ggtggcagcc ttggcgggtg tgccaaagca
     3121 agtgattcaa ctggcaaagc agcgtttggc acatttggag gaaatttccc accaaaccaa
     3181 acaagcaaac gaacatccac aggcggattt gttgttttcc gatggttttg atttgcaaaa
     3241 aaatgaagca attcaaccgc ttgtagtaga aaatgaagtt gaaaaagccc tgaaagccct
     3301 tcagcctgat gaacttaccc caagacaggc tttggacgag ttgtatcgct tgaaaaaatt
     3361 gttggggtaa attgaaaaaa taactaagaa atcgccccgt ttaaggggcg tttttgttta
     3421 gaacgtatgt gaaaactcaa tatagacacg gtttttgtca taactataga agctatgatt
     3481 gctttttacc ttgttatatt gccacgttaa gcgaggggta atacccttaa aatgcaaggc
     3541 tctgtgccag atgctggctt gcacaccata ttcactgtta cgttgtgtaa tttggaaaat
     3601 cggcattggg gctcggtatt gtttgcgggc gtagctggca cttaattggg ttgaaagccc
     3661 gtttttccac tcttgtcccc aaccaataga aacacctcgg cgaataaagc tatcatctaa
     3721 atcacggggg ctggtgcggt taaaattcgc ccccacaaac caatattgcc ggctgttagg
     3781 gtaaaaatag aggctcgggg caataaaatg ataattgccg tctaaatgtt ggcggcgagt
     3841 gtaacgctgt tccgcatatt cgtagctgat tgcagattgc cactgtggag taatccaata
     3901 ttgccagcgg gcattcacac cgcctgcgtt ggagtagcgt ttggtgcttt cggtttggct
     3961 tgagccaccg gcataccaca tctgctcaaa aaacggcaac aaggtgattt tttgttttgc
     4021 attttgataa cccaagccga ggctttctct gagcgaatat tcgttatatt ttttgttatt
     4081 ccagtaatat ttgccgtttc cgtttaaacg aaactcgtgg aagaaaccat tgccccaaga
     4141 ccacttttta tccgcctcaa agtgaaagcc gaccccttgg gcggattctt ttttcggtgc
     4201 agtccagttg ccataggtcg tgcctgcatt tggagcattg ttgatattcg ggtcattcaa
     4261 ataggttaag ccgccttgaa aactccattg atcttgcttg ccaatcgcct ccaaatagct
     4321 attgaccgca tttgcaattt cttgcggtaa tttgtccgct tgtaacttat aaaattgagc
     4381 ctctgcggct tcattttccc gattttcaaa caatgcaacc gctaattgca tacggattgg
     4441 ctgattttca gggtattttg ccagtagctg acggtagcct tttattgcct ctgaataatt
     4501 ttgttttgct ttggcattaa ctgcctccgc ccattgtaca acttcgctgt tttgtttact
     4561 ggcgggtaat tgttgataaa taggcagtaa gaattgaaca ttctcagtgt ggttagtgac
     4621 caacgcagtt agcattgccg agttgagcaa ctcaggctgt tgaagcagct gttggcttga
     4681 aatagagatc gattgccggt gagcctgtgc attaaccgct tgtggtttgg cttgaggttc
     4741 aggcttttct aatgtatgta ggtttttctg cattcgctgg ttatccattt tttcttgaag
     4801 ttgagccggt gtggtttccg caaatgccag gtttgaggta aggattaaaa gcgttgagac
     4861 tatttttttc ataaagctat cttttatttg aatagaaaag gctatttttc aatagccttt
     4921 agtgaagagt tttgaggttg ttttgctata tttttcatta agttaaatat atagctttaa
     4981 atatacctac tatatgctac taaataaagt atgcaatatt tgttatgctt tgtaaataag
     5041 aggaaagaga tccattttgg gtagaaaata gctcattgct tggaacttta aatggttatt
     5101 tcaccaattc aaccacttcc ttcgtcaatt tcccaatctc ctcccacttc tgttccttaa
     5161 tcagggattt ctccacaaac caagagccgc cgcaggcgac tacgttggga atggcgaggt
     5221 agtcgttgat gttttgtggc gagatgccgc cggtcggcat aatctgtaag ttgccgtaag
     5281 ggccgagcag ggctttaatc attttcacgc cgccactggc ttcggcaggg aaaaatttaa
     5341 ctgcttgtat gccaagttcg agggcggctt caatcgccat cgggttgttc acacccggtg
     5401 taacaggcaa acctaacact tggcaatact taacgatagt cggattaaaa cccggagtca
     5461 caatgcaatc cgccccagcg tttttggcag ttaagacttg ctctttggtc agcactgtgc
     5521 ctgctgcaat caatacttcc ggatagttgg cttgcactaa tttaattgcc tcttcagctg
     5581 cttccgagcg gaaagtgatt tccaccaccg gcaaaccgtt ttcggaaagg gttttcgcca
     5641 gcggtaaaat atcttctgct ttatccaaag caatcacggg aacaactttc agttgtctta
     5701 atttttcaat gatttgttcg gtggtgtaac gcatttctag cctcattatg ttgtattgca
     5761 agcggtcgct tttgtaaaaa attttgcaaa tttaaccgct tgtcgttgtg ctattgttgg
     5821 tctaaatgga ttgttcaaac tgcgatttca aatgagtagt ggcggatttg gcaataatcg
     5881 cccctttgtg ctgaatgacg ataccggcaa cggcatttcc ttgttggcaa caggtaacga
     5941 catctttacc caataagtaa ccgttaagga agccggcatt aaaggaatcg ccggcggaag
     6001 tggtatcgac caccttctct accgcaacag ttggcacaaa agtacgctcc ccgttttgca
     6061 acaccgttgc ccccagagag ccttgtttca ccacaatggt ctgaatgcca tattgagtga
     6121 gacggtcaaa ggtggcttgc tcattcacat cgccccaaag cagttgctcg tcatcaaagg
     6181 tcacgagagc taaatcgact aattgcaaca gctcggcata gtgagcttgg gcagcagcca
     6241 cactttccca cagtttcggc cggtaattgc tgtcaaaggc gattttcacc ccttgtgttt
     6301 tgagctcacg caactgtgca atcagcaaag tgcggtcgtt ttccggcaag atggcaaggc
     6361 tgataccgct caagtaaacc atatctacct cgtttagtgc cgagagtgct ttgggatagc
     6421 cggggtgttg caacaaataa cgggcggcag attgatttcg ccaatagagg aacgttcgct
     6481 cgccctgttt atccaactga atcagataca gccccggctg gcggtgctcg tcacgcaaca
     6541 caaaatccgt gttgatatta tccacctgcc acgccgctaa cattccctga ctgagcttat
     6601 ccgtgccgag agcggaaata taacgcacct caatctgttc aggcgaactc acccgagcca
     6661 aataggtagc ggtgttgagc gaatccccac cataggtttg gtgcatctcc ccaaacggct
     6721 ccccgtttaa ctcaatcata cattcaccga gaatggcgag ttttttcata ggaatacctt
     6781 ctaagttaca cgccgctata agcagagaat ccgccatcaa caggtaatac aacgccattg
     6841 ataaagctgg aataatggtg atccattaaa aataggattg cacctaccaa ttcatcggct
     6901 tgtccgaaac gtcccatagg ggtattcgtg aggattttat tagctctagc tgttggcgta
     6961 ccatcggcgt taaatagtag agctttattt tgattactca ctaaaaatcc cggtgcaata
     7021 gcattacagc ggatacctac ttttgagaaa taaactgcta accattgtgt aaagttactg
     7081 attgcagatt ttgctccaga ataggcaggg attttagtta atggagtaaa ggcattcata
     7141 ctggatatat taatgatatt agcgccctct ttacccaaca tatcttttgc gaaaacctgt
     7201 gttggtaata gtgtgcctaa gtaatttaaa ttaaatacaa attcaatccc tgctttatct
     7261 aattcaaaaa aagattttgt attttccggt aagttaatat cgtgaaattc attatctgtc
     7321 gttgcttttg gattattccc acctgcacca ttaattaaaa tatcacaagt gccaaaatct
     7381 tttagaattt catctcttgc ctgttttatg ctttctaatt caagtacatt agtttggtac
     7441 gctttcgcaa tatagccttc atcggcaatt tcagaagcaa aattctgtgc tgcttctaga
     7501 ttgatatcga gtagtgcaac ttttgcacct gtttttgcaa tttcttttgc aaaataagca
     7561 catagcacac cacctgctcc ggtaataaca acaactttat ctttaaaatt atgattttgg
     7621 gcaatagaca taataagaac tcctaagata accaattcat tggtacgata ataatttcag
     7681 ggaaaagtat taataagaac agtattgcag catagactag caagaatgga tagatacctt
     7741 tggttaatct agcaatacca atttttgcta taccagaacc aacatataat accgttccaa
     7801 caggaggcgt aattaaaccg atagataggt taattaccat cataatacca aagtaagcaa
     7861 tatcgatgtt atacgctctt agtaatggta atagtactgg tacaaaaatt aatactgctg
     7921 ggattaagtc cattacacag ccgactaata ataagaaaat cataatgacg aacattagta
     7981 cagtcgggct atcggtaata cctttgataa actcaactaa ctccataggt atttgagcaa
     8041 cagtaactgc aaatgcagat atcattgccg ccgctgcaac aaacataacc attgcagttg
     8101 ttttgatagt gcctaagaaa acatcttgga ttttatctaa ggttaaccct tttaagataa
     8161 tgctgattat tgctgcataa attgctgcta caactcccgc ttctgttggt gtaaagatgc
     8221 cgcctcttaa acctacgata ataataattg gaagtagcaa tggtaagaat gctgatttaa
     8281 atgcagccca acgttcttta cctgtttttt tcggttcaac ggtttgttct tcgtttcggt
     8341 ataagaattt ccaaactaac cataaaccta aaaccattaa aaagcctgga accattcctc
     8401 ccataaataa tttggtaatt gatgcaccgg ctgtaatacc atagacaatc attggaatgc
     8461 ttggtgggat aactacagaa ataatacctg ctgcacagat taagcctgtt gaacgtgcaa
     8521 catcatattt tcttgcaacc atcatcggaa taagaattgc accgagagcc gcggtatcag
     8581 caacagcgga gccggataaa cctgcgaaaa ttaagcctga aataatcact acatagccca
     8641 atccgccttt aatatggccg accatgctca ttgcaaaatt gataatacgt tcggaaatac
     8701 cgccgtgttt cataatttca ccggtcagca taaaaaacgg gatagccatc agcggaaaat
     8761 tatttgtacc cattacgaaa ttctccgtga ttaattgggc atcaaacata tccattttcc
     8821 atagcataaa actggcacta agtagcatag agagagcaac gggcactcct aaaaagagaa
     8881 agaggaatag acttcctaaa aatagccata acatatttat ttctcctctt taatgaaagc
     8941 tagccgaata tgtttccata aatttgtgaa tacaatagcg aaataggaga tagatgaaat
     9001 aactgctgca aaatatagaa acgcagatga aatttcagtt gctggcattt tttgtgtgta
     9061 tgtcaataac attaactggt atgcaccgta agtaataaat gacagtgcaa ctaagactaa
     9121 aatatcagca aagaacagta agtacatttg tacttttgcc ggtagtgcag aaacaacaat
     9181 atcaacggtg aggtgtcccc tttcctttgc aacgaggatt attcctagaa agatcatata
     9241 gacaaagcag attctggcga attcctcaga ccaagctatt ccggagtcaa aaaaatatcg
     9301 taaaaccgca ttaaaaaaga ctaggataat cattgtagat agagcaatta tcgcaaggag
     9361 tttgagagtt ctatctaatg ctgtagaaat ttgcataaat ttctccttct tcatttagat
     9421 gggcgacctc ttttatccgg tcgcctcgct tattgcttat ttggctgcgt ggatttttga
     9481 aataacatct ttagcccaat catatttctg atagaaattt tgataaagcg tttcggatgc
     9541 ttttaacata tcagctttaa attgttcact cggaacaatg acttctttgc catttttgtg
     9601 gaagaaatct tttacatctt gttccatctt catcgctaat tcccactctt tttcttggta
     9661 gagttttgct gcctctaaga agattgtctg atcttcttta gacattttat tccaagtttt
     9721 caaactaagt tgtagtaagc caggtgagaa aatatgatta gattcaataa tatatttttg
     9781 cacctcgtat aaaccagaat ctttaattaa catatatgga ttttcttgcc catcaatgac
     9841 tttttgttct agtgcggtaa atacttcact taaaggcata ctttgagggt taatatgcat
     9901 tgcttttgcc cagtccacaa acaacgaatt tagtggaacc cttaatcgca aacctttaaa
     9961 tccatcaaaa ttctcaactt ttttattgga agagataaca cggaagccat tcataccata
    10021 cgctagtaat ttaatgccgt acttctccat tttttccccg atttcttgag caataggaga
    10081 ttctagaact ttcttagctt cggcattatc tttaaataga tatggccact cccatacgcc
    10141 aaaaattgga tcaacatttt gtagtaataa acctgtaatg ccaccttcaa tcgtgccatt
    10201 acgcaaacca tttacaattt gatcttctcc tcccaactgg ttatttggga aaatacggat
    10261 ttcgtagcgt ccttctgttt tttcttcaat ggtttttttg aagtattcct gcaatgcgat
    10321 atttgatgga tgaacatctg aattatagtg accaatctta atgatagtct tcgcaaatgc
    10381 cgaaccggtg aacatcaggc tagaaattaa tagagcttta gtgaaagttt tgagtttcat
    10441 agttattacc tcgtaggtga gttagtattt aaaatacagc gatgattttt aagtaatcat
    10501 caggattagc tgagagttct tcgatatagt gaggtatttc atcaaatgta attaccttac
    10561 taatgatatc ttttggttca attcttcttg atgccagaag ctctaatgct tcttcaaatg
    10621 cccccttgct tgttcttgcc ccataaatat taagttcttt gaaggtgatt aaattagttg
    10681 gtaatggtgt ttctgttttc ggccatccgg ttaaagcaat acgtccagca aaagaggtgt
    10741 atttaagcgt attttgtact gcgacatttg ctcctgacgc ttcaataacc acctctgcca
    10801 ttcttccatt ggtaattgat ttaatagctt caagatcgtt ttcttttgtt ggattaattg
    10861 tgtgtggaat accaatagat tttgcgtaat ccaatcgctt atctaaaatg tcaattaaaa
    10921 tcggcgtcgc tccataagct ttggcaacca atgcagccat tagcccaatt gcccctgctc
    10981 caatgatagc aacatgttca ccagctttga cttttgttct atgaattgcg tgtaaggaaa
    11041 tagttaaggg ttctgctaac gctaattcgt gtattggcat atcaggtgtt ttgattatca
    11101 tatgggctgg atgtctaaca acctcttgca ttgccccatc aatatgtacc cccaatactt
    11161 ttagagattc gcaacaattt gttctaccaa tggagcaggg atagcaatgt ccacaataga
    11221 tgtaaggttc aatgatgaca cgatctccta cattaatatt atttggcata cctttaccag
    11281 actcaattac tgtgccaacg atttcatgcc ctaaaattct aggataagta acaagtggat
    11341 tagtgcctct aaatgctcca atatcagagc cacatatccc cataccttct actttgatta
    11401 gcacatcatt ttcaccttta acaggataag aaacggtttg tataccaact ttattaggtt
    11461 ctacaagaca tactgatttg agtggttttt ccatgatttt gtcctttttt gataaagtta
    11521 atcgacattt tgtagtgtca atggtatttt atgcacagat actaacacca aaaaacaagt
    11581 ttggcattcc aatttttgtg attttgtgaa cctgatcaca aaaatgaaat tttggaattc
    11641 caatttcgtg aggatttatg caaaatagtt ccagaactta cactaaaata ggaaaaattc
    11701 tcaaagagga aattgctcaa ggaaaataca gagtaggaga taagttacct actgagagag
    11761 atatttctga aagatttgaa gtgagtagaa ctatcgtaag ggaggcgata gtgatgctag
    11821 aagtagaaaa gcttattgag gtaaaaaaag gatcgggcgt gtatgtcatt agagtcccgg
    11881 agctttttcc agaagatttt ccagaagaga aagataatga gctaagggat gttgggccat
    11941 ttgaactact tcaagcacga caattattag aaagcagtat tgctgagttt gcagcacagc
    12001 aggctaccaa acaagatata caagtacttc gtaacatatt agaaagtgag aagaaacttt
    12061 tgttagagaa gatggatgac tacagtgcag ataaggaatt tcatcttgca ttagctcata
    12121 tgacgggtaa cgatgttctg attcaattac aagaacagct ttggcgatac cgctttaata
    12181 gtgcgatgtg ggctcagcta cactccagaa ttttacagca tgatcatcac cacttgtgga
    12241 tagaggatca tgagcgaatt ttaaatgcaa tacagagaaa aaatcctgca ttagctcgta
    12301 aagcaatgtg gcaacatcta gaaaatgtta aaactaaatt gcttgaattg tctgatgtag
    12361 aggatcctaa atttgatgga tatctattca atgtaaaccc cgttgtagta ggtatctaaa
    12421 acctaaacta cacaatgagg agtttactat ggaacaagca tggcgttggt atggaccaaa
    12481 cgatccggta tctttagatg atgtaagaca agcaggggca acggggattg tgacagcgtt
    12541 gcaccatatt cccaacgggc aggtgtggtc ggttgaggaa attaataaac gtaaggcatt
    12601 attagctgaa aaagggctgg tttggtcggt ggtagaaagt gtgcctgttc acgaagaaat
    12661 caaaactcaa acaggcaact atcagcaatg gattgataac tataagcaaa ccttgcgtaa
    12721 tttggcaagc tgtgggattg atacggtgtg ctataacttt atgccggtgc tagattggac
    12781 tcgtaccgat ctggagtatg aaatgcctga tggctcaaaa gcattgcgtt ttgaccaagt
    12841 ggcgtttgcg gcgtttgagt tatatatctt aaaacgcccg ggagcggaag ccacttactc
    12901 atcagcagaa caagccgaag ccaaagccta ttttgagcag atgagtgacg ctgatattgc
    12961 aaaattaacc aaaaatatca ttgccggttt gccggggtct gaggaaggct atacgctcga
    13021 agaattccaa gcacagcttg accgctatca agggctctcg gctgaaaaat tccgtaccca
    13081 tttagcctat ttcttaaatg agattgtgcc ggttgcacaa gaggtgggca ttcgtatggc
    13141 gattcaccct gacgatccgc ctcgcccgat tttaggcttg ccacgcattg tttcaaccat
    13201 agaagatatg caatggtttg tggaaactca accgcttgca gccaatggct tcacgttctg
    13261 taccggttca tacggcgtat tagccgagaa tgatttggtc aaaatggcag agcagtttgc
    13321 agatcgcatt tattttgctc acttacgagc tacccaacgt gaagaaaatc cacaaagttt
    13381 ccacgaagcg gatcatcttg ccggtgatgt cgatatgttt ggcgtggtga aagcattact
    13441 taccgaagag tatcgccgca aggcaaatgg cgatcaccga ttaattccaa tgcgtccgga
    13501 tcacggccat caaatgctcg atgatctgaa gaaaaaaacc aacccaggct attctgcgat
    13561 tggtcgttta agaggattag cggagttccg tggattggag ttggcactta agaaagtcta
    13621 ttttaacgat tagccttatt tattataatg ccctctactg tagagggcat tttatagttt
    13681 gatatgttca aaaaatattt cggcgaaata atcctttttc tcgttacctt tattgctgca
    13741 gcggggtggt ttttctctaa acacgcttta gttggattac cgcctattgg ctttatggga
    13801 gggcgtttta tattagcctc tttgattctt ctgccttttt cttaccgaga gctgtatcgt
    13861 ttagataagg ttcaagttaa atattcggtg attaccggtc ttacttacgg aatttatact
    13921 attttttggg tattggggct ggcttttagt acagtgtttg gtgaaggggc ttttttggtg
    13981 agccttgcga tgctgattgc tcctttgctc tcttggttga tattcaaaca tacgccaccg
    14041 aagatttttt ggttagcctt acccattgca ttaagtgggc tttactttct ttctgcggag
    14101 aaaggcatct ttcatttttc cttaggcagt acgatttttc tggtgtcatc agtgtttggg
    14161 gcgttatatt ttgtgttaaa taatcaatac gccaaacaag tctcattgtt tccattaatt
    14221 actatccaat tggcgatagt cggtgcggtc tgtagcttgt attcctattt tatggaaagt
    14281 tggcatttcc cgattctcac cgaagtgtgg ctctggtttg ccgcaagtgt attgattgcg
    14341 acaaatttac gttttttaat gcaaacactg gggcaaaaat attgccatat tggtacttct
    14401 gcactcatta tgttacttga gccggtttgg acattgttat tgagcgtgat gttattgggg
    14461 gaacaactta gtgcgacaaa atggctaggt tgcagcttga ttttgatagc attgattatt
    14521 tatcgactcc ctattctacg actcaaaaaa taggtaaaac aaaagcaaat atgccatagt
    14581 attggaagca gttaggcatt ttagagtaag taacaagcgg tcatttttgc aaaaaatctt
    14641 gcaaaaatga ccgctttctt tcttttatcc gttcaatcta tgttaaaatt ctacattttt
    14701 ataagatgag agagagaaac gtggaacaga atttagtcga atttttaacc aaaaccttag
    14761 atgatttaaa ggcacaagat attttagcca ttgatgtgaa agggaaatct agcattactg
    14821 atacgatgat tttagccacc ggtacatcga gccgtcacgt tgcttcaacg gcagagcgtt
    14881 taattacgga agcaaaacag gctgggttcg aggtatttgg agatgaaggt aaagcagttg
    14941 ccgattggat cgtggtcgat tttgggaagg caatggttca cttgttgcaa tccgatagcc
    15001 gtgagatgta ccaattagag aaactttggg cgtagcagtt caataaggaa cgacaagcgg
    15061 tgatttttgc aacatttttt gcaaattaaa ccgcttgtaa gtgaaagaga gatgaaaatt
    15121 caattaattg cggttggcac taaaatgccg gcgtgggtaa cgacagggtt tgaagagtat
    15181 caacgccgtt ttccgaaaga gatgccgttt gagttggtgg aaattccggc aggaaaacgg
    15241 ggcaagaatg ctgatactaa acgcattctt gagcttgaag gcaaagcaat gttggcggca
    15301 gcgggcaagg caaaaatcgt gactttggat attccgggca aagcgtggac aaccgagcag
    15361 ttagccactc agttagaggg ctggaaaaac gatgggcgag atgtagcgtt attgattggc
    15421 ggcccggaag gattatcacc ggaatgcaaa gccgctgccg agcagagttg gtcgttgtcg
    15481 cctttaacct tacctcaccc actggtgcgg gtggtggtgg cggaaagttt gtatcgggcg
    15541 tggtcggtta ccattaatca cccttatcat cgagagtagt gagtcatttt agatagtgtt
    15601 atatgtttgg taaattagca aaattcacag cttcaaacca gcgagaaaag gtgcgagacg
    15661 ggcaggcaga aagcaatctg tatgcccgcc gtgccttagt tgcgtttctg ggggtgttgg
    15721 cgttaagtgg tgttttatta accaacttgt atcacttgca agtggtgaat tatgaggact
    15781 accaaacccg ttcaaacggt aaccgcatta aattgttgcc tgtgccaccg gctcgaggct
    15841 taatttatga ccgtaacggt aaagtattgg cggaaaattt aacctatttc gggctgttta
    15901 ttgtgcctga aaagacggaa aacattgagc agactttaac cgagttgaag gatattgttg
    15961 ggctgacgga cgaagatatc gagaattatc ataaagagaa aaaacgcagt tctcgctata
    16021 ccccaattat gctcaaaggc aatttgaatg aggctcagat ggctcgtttt gcggtgaacc
    16081 aataccgttt tccaagttta gatgtgcagg cgtattataa gcggaattat ccttacggcg
    16141 agcttttaac ccatattatc ggttatgtgg cgaaaattaa cgaaaacgat aagaaaaagc
    16201 tgcaagaagc cgggaaattc ggcaattatg ccggttcgca cgatatgggg aaattgggga
    16261 ttgaaaaatt ctatgaagat cagctccacg gtgtcaccgg ttttgaagag gtagaaatta
    16321 ataaccgagg gaaagtaatc cgtaaattgc gtgaccaagc aggggttgcc ggtagcagta
    16381 ttcgcttgag tattgatgtg gaattacagc aatatgtgat gtcgttaatt gctaagcata
    16441 aaggggcggt ggtggtgctt gaccctcgtg atagcagtat tttagcgatg gtctcaaacc
    16501 caagttatga caataattta tttgtgggcg gtatttcagg gcaggattat aaagcattat
    16561 tggacgatcc aacccgacca ctttatagcc gtactacaca aggcacttat ccaccggctt
    16621 caactattaa gccatttatg gcggtggcag gtttggaaga gggaatgatt accccttcta
    16681 ccaccatttc agaccccggc tattggattt tgcccggcac tacacaacgt tatcgagatt
    16741 ggaaacgtag cggacacggt gcaactaatg tgaataaagc aattaccgaa tcgtctgata
    16801 cctttttcta tcaattagcc tataaaatgg ggattgataa aatgtcggat tggatgaaaa
    16861 aattcggttt cggagtgaaa accggtatcg atatttttga ggaatccgca ggggtaatgc
    16921 caacccgtga atggaaacaa aaacgctata aaaaaccttg ggtgcagggc gatactattc
    16981 cggttgggat tgggcagggc tactggattt cgaccccgtt acagttggcg aaagccacgg
    17041 cggtgttaat caacaacggg cgggtgaata caccgcattt aatgcttgaa gtgcaaagca
    17101 gtaattcggt tacgccgtat caagacccat tgttgtatga agatattaaa ggcgtgccgg
    17161 atgtctattg gaatttagca aaacagggaa tgtataacgt aaaccacgcc gcaaacggta
    17221 cggcacgaaa agtgtttgcc ggtgcatttt atcattcagc agggaaaacc ggtacggctc
    17281 aggtgtttaa cttaaacggt aaaaattacg ataaaaatgc gattaaaaaa gagttgcacg
    17341 accacgcttg gtttatcggc tatgctcctt atgaacaacc taaaatagtg gtggcattaa
    17401 ttttagaaaa tgcaggcggt ggtggtagtg ccgcggctcc tgttgctcgt cagattatgg
    17461 attatgcttt gagaaaaggc attggtgaac agccggattc gcaaaattct gagcaaaata
    17521 aaccgcttgt cacagaggaa catcatgaat agtggcttta aaaaactttt ctggaaaatt
    17581 ttttcactcg atctcctttt attatcagga ttattagcta ttaccggtta tggtttatta
    17641 gtactatata gcgcaagcgg tgcaaatgag cggatgttta ccagtagact gattcaagtt
    17701 tcgctagggc ttgggctaat gttgataatg gcaatggtac ctcctcgctt ttatcaaaaa
    17761 gtttcgcctt atctgtatat tttctgtctg atattattga ttttggtgga tttggtcggc
    17821 gaaaccagta aaggagcgca acgttggttg aatttaggat ttgttcgctt tcagccttct
    17881 gagattgcca agctcgctgt gccactgatg gtagccactt atttaggtaa gcggccgctt
    17941 cctccgagtt ttaaagatac ttttatcgcc ttagccatta ttattgtgcc aaccttattg
    18001 gtggcaattc agcccgattt gggaacatct attttagtgt gttctgccgg tatttttgtt
    18061 ttatttttgg cagggctaag ttggaaatta attggcgcag gtgtggtgtt tttagccggt
    18121 tttatcccga taatgtggtt tttcttaatg cacgattatc aaaaaacccg ggtgatgacc
    18181 ttaattgatc ctaataaaga cccgttgggt gccggctatc atattattca atccaaaatt
    18241 gcgataggct ctggtggcat taatggaaaa ggctggatgg aaggaacgca atcccagctt
    18301 gaatttttac ctgaaccgca taccgatttt atttttgcag tgttaagcga agagcatggt
    18361 atgataggtg tgctgatttt attagcgatt tatttgttta ttattgcccg aggtttagtg
    18421 attggcacaa aatcggattc tgctttcggg cgtatattat caggtggtac agcccttcta
    18481 ttttttgttt acgtttttgt aaatattggt atggtgagtg gtattttacc cgtagtcggt
    18541 gtaccattac cgcttttcag ttacggcgga acctcctatg tgacgctgat ggcggcattt
    18601 ggtttgatga tgtcaaccta tgttcaccgt aagcgtgtag gtagtaataa tccttatgat
    18661 aaactgaaat aaattaaact tttgcttttt tgcggtatca aaaagcagtg aaacgatcat
    18721 cgttacaaac aataacgaca tccacataga ggaaaaaact tatatgagat taggtaaaat
    18781 tgtaaccctg ttgttagctg gatttctgac atttagttca ttaaattctt tggctgcgac
    18841 aaagaataca aaagctaaat cgagtatttt agccaagaag caagcaactt ctaaagcaat
    18901 aaaaaaagta ggtatttcta aagttaagaa aaaagaagta gtggctaaag ctacaaaaaa
    18961 gaaaacaatt tctactgtta caactaagcc gattaaatct acaaaaaagc tggctcgcaa
    19021 ggttgtcaag aaaacggtaa ccgctaagaa aaaattggta aaaaagcagc ataagccact
    19081 ggtcaaaaaa catttccaga ctggtgttgc cagctattat gcaaattact ttaatggtcg
    19141 ccgaaccgct aatggggaga ctttcaataa cgcaaaaatg acggctgcac atcgaacttt
    19201 accatttggt actttaattg aagtgacgaa tttacgaaat ggtcgttctg tggtggtgcg
    19261 tgtaaatgat cgcggacctt atgctcacgc acgggtcttg gatttatcat cagccgcagc
    19321 gaaaaaaatc ggtatgcacc attcggggac ggcaagagtg aaaattgcga ttgttgataa
    19381 gtcaaaattg ggatcgacta atcagtttta tgtaatgaat taatttaaga gggaatatga
    19441 aaaaaacatt agtgaaagcg atgagcgtgg taggttttgc ggtttcaagc attgcctatg
    19501 cggatttaaa cactaacttc aatttatcgg caccccagat caacgcacaa acctatattt
    19561 tgatggatta caactccggt gaagttttag tgagcctaaa tccggatcaa cgtcaatatc
    19621 ctgcatcatt gaccaaaatg atgactagct acgtagttgg tgaagcccta aaatcgggaa
    19681 aagtgcaaaa cagtgatatg gtgatagtca ccgaaaattc gtgggcgcaa aaattccccg
    19741 gctcttcatt aatgttttta gatttaaaca gcaaagtttc agtaggtgag ttgatgaaag
    19801 ggctgattat cgtctcgggt aatgatgcct ctgtggcgct tgctgaacat gtttcaggct
    19861 cacaagcggc gttcattaat gaaatgaaca aatatgccca acagtttggc ttaaagaata
    19921 ctcactttac cactgttcac ggtttagatg accctgagca atattcttct gctcgtgata
    19981 tggcgattat tggttcgcat attattcgtg atcagccgga agagtataaa atttatgcgg
    20041 aaaaagagtt ccaatataac atcaaaaaac cacaaccaaa ccgcaacgga ttattgtggg
    20101 ataaaaccat tcaagttgat ggtatgaaaa cagggcatac tgataaagcc ggctataact
    20161 tagtcgcatc agcaattaac ccgaatacac gtttaatttc tgtagtgatg ggcgtgccaa
    20221 cttataaagg gcgtgaagtg gaaagtaaga aattactgca atggggcttt gcgaactttg
    20281 aaaccattaa atctattccg gcagctcaat cggtggcaga gcaaagtgtc tattacggtg
    20341 aagtcaataa agtacaatta ggctcggtgc aagatagctt tgtgactatc ccgaaaggtc
    20401 gctcggcaga tttaaaagcc cgttatgagt tagagaagaa aaacctcgaa gctcctttag
    20461 caaaagggca ggtagtgggt aaaatgatct accaacttga cggcaaagat gttgcaagca
    20521 ctaacttaca agtcttacaa gatgtaccgg aagccggtat tttcggcaaa gcgtgggatt
    20581 ggattgccct tactgtgaag agcttgttcg attaatcttg ttatttgcct ttttatcccc
    20641 atctagggag caatgcaagc ggtgtgattt tgcaaaaaat ttgcaaaatt tcaccgctta
    20701 ccgttttaga tatgaatgta taaaaagtgt agtggcgaaa aatttttcgc ccctcgaaga
    20761 aagaatagaa gaaggatcaa aaatgtctca acccaaagcg ataaacttac aagatttacc
    20821 tcaagccaaa ttaaaagatc tgctagagtt tccgtgccat ttcacgttca aagtggtggg
    20881 agcaaaccga gaagatttgg ttgatgatgt ggtagtggtc acgcaaaaat atgccaaagg
    20941 cgattacaat ccacgtcagc aaaaaagctc aaaaggtacc tataattccg tttcgattga
    21001 tattgtggcg gaaaatattg agcaagtaga aactctctac acggaacttg ccaaaattaa
    21061 tggcgtaaga atggtattat aatgcgaggg gcgaatgaca ttcgccctca atttttcaat
    21121 aaagcgatgt tggaaaatag aaaatgaaat taataattcg ccaactaggc attcagcctt
    21181 atgaagaaat ttggcaccaa atgcaatctt tcacagatag ccgtgatggg aataccgatg
    21241 atgagatctg gctggttcag cacccggctg tgtttacgca aggatcggca ggcaaaccgg
    21301 agcatttgtt aaatccaacc aatattccgg tggtgcaaag cgaccgtggc ggtcaaatta
    21361 cttaccacgg cgaggggcag caaattatgt atgtgctgat tgatatcaaa cggctgaaat
    21421 ccttgggtaa agaagtgtcg gttcgagatt tagtgactgc cctggagcaa accgtggtac
    21481 aaacgttggc agaatatggc atagaaagtt atccaaaagc cgatgcaccc ggggtgtatg
    21541 tggacggcaa gaaaatctgc tcacttggtt tacgaattcg aaaaggttgc tctttccacg
    21601 gtttggcatt aaatatcaat atggacttaa cgccttttca aaacatcaat ccgtgcggtt
    21661 atgcagggct ggaaatgtgc caattaagtg aactggttca tcgccctgat ttgcgttgcg
    21721 aagaggttgc tccaaaatta gtggctcatt tcagcacaat tttaggctat aataaccaac
    21781 aaattattaa caattaggat aaaacacagt aatggctaca tcgacagctc aaacgacggc
    21841 aactgctaca gtgaaaaaaa tgagcccttt caaaatggaa aaaggggtga aatatcgtga
    21901 tgccgccaaa acctctgtga ttcaggtgcg taatatcgac ccggatcaag aactcttaaa
    21961 aaaaccggag tggatgaaaa tcaaactgcc ggcaaattcg gcaaaaattg atagcattaa
    22021 aaacggtatg cgtcgccacg gcttgcactc ggtgtgcgag gaagcctctt gcccgaattt
    22081 acacgaatgt tttaaccacg gtactgcaac ctttatgatt atgggggcaa tctgtacccg
    22141 tcgttgcccg ttctgtgatg tggcacacgg caaaccgctt ccgcttgacc cggacgaacc
    22201 tcgcaaagtg gcagaaacgg tgcaagatat gaaactcaaa tatgtggtga ttacctcagt
    22261 ggatcgtgat gatttgcccg accgtggtgc ggctcatttc tctgcgaccg tgcgtgaaat
    22321 caaagcctta aatccgcatt gtaaggttga aattttagtg cctgatttcc gtggacgtgt
    22381 ggagcaagcg gtggcaattc tcaaagaaaa tccacctgat gtctttaacc acaacctaga
    22441 aaatgtgcca cgtctctatc gtgaagttcg tccgggagcg gattacaaat ggtcgttgga
    22501 attattgaaa atcttcaagc aagagttccc gcatattccg accaaatccg gcttaatggt
    22561 aggcttaggt gaaaccaacg aagaaatctt ggaagtaatg caagatttac gagaccacgg
    22621 cgtgacgatg ctcaccatcg ggcaatactt acaaccaagc cgccaccact taaaagtgga
    22681 acgttatgtg ccaccggcag agtttgatat gttccgtgag gaagctgaaa aaatgggctt
    22741 tgaacacgca gcctgcggac cgttcgtgcg ttcttcttac cacgcggatt tacaagcgaa
    22801 aggcgaattg gtgaaataaa atcgataagg gcgaatatta tttgcccttt gtttttgtgg
    22861 tttgcaaagt tttagcaaaa ttaaaccgct tgtaatctct tctaatttac tcttctatag
    22921 ataatttcgt tgttgcgaat tattttcatt gactatttgt tatagaaagt tacaattcaa
    22981 ctttccattt ctttttggag ttccaatgaa aaaattacta ttaaacagcg tatttgctgc
    23041 cacattgctt gcttttggtg caactgccaa tgccgaaatt aaaaccatca ctgatgtatt
    23101 agggcgtgag gtcaaagttg atgtgcctgc taaacgtgtt gcactgactt tctattaccc
    23161 tgactatatt gcggtaaccg gtgttgaaaa tttcgataag gtagtaggga tttcacgaga
    23221 gttttgggaa aagttcaacc caggcagttg ggcattattt gcagaaaaaa tgccaaatct
    23281 aaaaaacatt gccgatcttg gctatgtgaa tagtggtact ttttcaacag aaaaaaccat
    23341 cgcattaaaa ccagatgtgt tagtgctacc tgaaattcaa tatcaagcgt tagccagtga
    23401 aatttcacgc attgagcaag ctggcattcc tgttgtagta gatttcaaca agcaaactat
    23461 tgaaaaccat acaaaaagcg tgagagtttt cggtcagctt acaggcactg aagagagagc
    23521 ggagaaaatt gccaaagagt atgaagaggg cattgctgat attcagagct gtattgataa
    23581 tgcaaaagta agtaagccga aaatctatgc tgaatttggt aataaaggcc cgaaagagca
    23641 tagttttacc tttggtaaaa atatgtgggg agcgattgcc gaaacggtgc gaggcgataa
    23701 cattagtgcc ccgtttgtag aaaactgggg gcagattaac cctgagcagg tgttagtttc
    23761 taaacctgat gtgattatga tttcaggtac ggaactaggc aacgacacta accctgagat
    23821 tatgtcgatg gggattaata ttgaagaagc cgatgctcaa aaacgcttaa aaggctttat
    23881 tgagcgtaca ggttggaaag agttacctgc ggtaaaatca gggcgtgttt atggtttata
    23941 tcatacagct tctcgctcaa tttcagattt agcgagtgct caatttatgg caaaagcact
    24001 ttatcctgaa ttgtttaaag atatcgatcc tgaaaaaacg tatttggatt tccacaacaa
    24061 ctacttacca attacgccaa aaggcacatt ctttatgcaa ctgaaataaa aataacaagc
    24121 ggtcattttg cagatttatt ttgcaaaatg accgcttgta ttcgctttta ctatttgcgg
    24181 ttcaaacagc aatcaatatt taaacatttg cgaagcgggc ggataatcgg cgagccgttt
    24241 ccatcatata aaatctcaat attgacatta tagagtctct gaataatatc gcattccaac
    24301 atatcacaag ctctgccttg tgcttgaatt tcccctcgct taatagcatc acactatccg
    24361 aaaattgagc cgcaaggctt aaatcgtgca gcaccataat tgtaattagg ttattcgctc
    24421 gagtgtaggc attcacatat tcaagtaagt tgatttgatg atacatatcc aacgcactga
    24481 caggctcatc tagcagcaga atgtgtggtt tacgtagcaa tacttgtgcg aacattacca
    24541 tttgccgttg cccgccactt agccgcataa tatcttgatg agctagatgt gaaataccga
    24601 gtttatccat aatatcaacg gcttcattga gtaattcatc gctaatatac atattcaggc
    24661 tatcaagttg ccctaataaa ataacctcta aggcactgag tgaggcctct acctgtgtgt
    24721 cttgtggcat atagccaatt tctttacgcc aactatgcaa gtggcttgag gttaatttat
    24781 taccgtcaaa atcaattgtg ccttgatgag caatttcccc aaatagagtt ttaaggagag
    24841 aagatttacc cgcaccattt gggccaagta aagtatagat cttgccttgt tcaaaatgta
    24901 gattgatttt atcagccacc act
//
LOCUS       DANLXK010000021        23277 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.021, whole genome shotgun sequence.
ACCESSION   DANLXK010000021 DANLXK010000000
VERSION     DANLXK010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23277
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            140..799
                     /locus_tag="PXD88_000731"
     CDS             140..799
                     /locus_tag="PXD88_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6280333.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            complement(859..2184)
                     /locus_tag="PXD88_000732"
     CDS             complement(859..2184)
                     /locus_tag="PXD88_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL6280334.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
     gene            complement(2285..3037)
                     /locus_tag="PXD88_000733"
     CDS             complement(2285..3037)
                     /locus_tag="PXD88_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL6280335.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            complement(3037..3942)
                     /locus_tag="PXD88_000734"
     CDS             complement(3037..3942)
                     /locus_tag="PXD88_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL6280336.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            complement(3951..4514)
                     /locus_tag="PXD88_000735"
     CDS             complement(3951..4514)
                     /locus_tag="PXD88_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL6280337.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            complement(4514..5290)
                     /gene="yaaA"
                     /locus_tag="PXD88_000736"
     CDS             complement(4514..5290)
                     /gene="yaaA"
                     /locus_tag="PXD88_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL6280338.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            complement(5479..7199)
                     /gene="ltrA"
                     /locus_tag="PXD88_000737"
                     /pseudo
     CDS             complement(5479..7199)
                     /gene="ltrA"
                     /locus_tag="PXD88_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341372.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            complement(8881..9276)
                     /gene="rpsI"
                     /locus_tag="PXD88_000738"
     CDS             complement(8881..9276)
                     /gene="rpsI"
                     /locus_tag="PXD88_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL6280339.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            complement(9293..9721)
                     /gene="rplM"
                     /locus_tag="PXD88_000739"
     CDS             complement(9293..9721)
                     /gene="rplM"
                     /locus_tag="PXD88_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL6280340.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            10020..10415
                     /locus_tag="PXD88_000740"
     CDS             10020..10415
                     /locus_tag="PXD88_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL6280341.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
     gene            complement(10576..12147)
                     /gene="guaA"
                     /locus_tag="PXD88_000741"
     CDS             complement(10576..12147)
                     /gene="guaA"
                     /locus_tag="PXD88_000741"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL6280342.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(12164..12475)
                     /locus_tag="PXD88_000742"
     CDS             complement(12164..12475)
                     /locus_tag="PXD88_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280343.1"
                     /translation="MKKLSLISIVALSACSIFGPSYSGETTASPLLKLDTERNINLYF
                     QAIHKCTPDKIHTKIINIPSEGNAKELWTATGCNKTQSFIITYRNDGVGGTFINMTTT
                     P"
     gene            complement(12597..13268)
                     /locus_tag="PXD88_000743"
     CDS             complement(12597..13268)
                     /locus_tag="PXD88_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL6280344.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
     gene            complement(13389..14852)
                     /gene="guaB"
                     /locus_tag="PXD88_000744"
     CDS             complement(13389..14852)
                     /gene="guaB"
                     /locus_tag="PXD88_000744"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL6280345.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            complement(15080..18247)
                     /locus_tag="PXD88_000745"
     CDS             complement(15080..18247)
                     /locus_tag="PXD88_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL6280346.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENDLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            complement(18261..19466)
                     /locus_tag="PXD88_000746"
     CDS             complement(18261..19466)
                     /locus_tag="PXD88_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL6280347.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            complement(19497..20069)
                     /locus_tag="PXD88_000747"
     CDS             complement(19497..20069)
                     /locus_tag="PXD88_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL6280348.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            20308..20529
                     /locus_tag="PXD88_000748"
     CDS             20308..20529
                     /locus_tag="PXD88_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL6280349.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            20534..22267
                     /locus_tag="PXD88_000749"
     CDS             20534..22267
                     /locus_tag="PXD88_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL6280350.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(22334..23035)
                     /locus_tag="PXD88_000750"
     CDS             complement(22334..23035)
                     /locus_tag="PXD88_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280351.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(23032..>23277)
                     /locus_tag="PXD88_000751"
     CDS             complement(23032..>23277)
                     /locus_tag="PXD88_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280352.1"
                     /translation="RRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSFQMEPSSAG
                     IMMTVYAWVVFLLSLPLMLLTANMERKRLLLMLFMGE"
BASE COUNT         6754 a         5241 c         4364 g         6918 t
ORIGIN      
        1 ttgattttta aggtaaagca attttaaaca agcggtcatt ttttcctaat tttttgcaaa
       61 ttaacaggcg tgaaattcgc attctgctct aaatcaagtt atcattaatc tacttatttc
      121 acttataaaa ggaaaaacga tgtttaatat tagcaaacag caagttttag acgcttttca
      181 cttccgttcg gcctgtcgca gttacgatcc aaacaaaaaa atcaacaaag aagatatgga
      241 ttatattttg gaactcgggc gtctctcacc aagctctgtc ggttctgaac cgtggaaatt
      301 tttagtgcta caaaacccgg aaacccgtca gaaaatcgcc ccggtttcgt ggggaattaa
      361 acacccaatg gaagaaatga gccatttagt ggtgatttta accaaaaaga atgtccgtta
      421 tgattctgtc tatatgcgtg atatgttagc caaacgaggc ttaacctatg agcagattga
      481 agcctcgctg gtacgctata agtcgttcca agaagaggat atgaaattgc ttagtgaacg
      541 tgaattattc gattggagta ccaagcaaac ctatattgca ttaggcaata tgatgaccgg
      601 tgcggctctg attggtattg actcttgccc gattgaaggt tttcattacg ataccgtaaa
      661 ccaaatttta tcggacgaag gcttatttga cctaaacgaa tatggtgtgt cttgtatgat
      721 aacttttggc tatcgcaaca aagaaattaa gaaaaaatcc cgcaaaccta ccgaagaagt
      781 gattgcgtgg attgaataat caccttaact tataaaaacg ggcgaattaa tcgcccattt
      841 ttatatcttt agttttgact actcggcttt cacccattta ttggttaatg tgcccgccac
      901 cattgcacca ttcacgttta aggcggtgcg agccatatca ataatcggct caactgaaat
      961 gagcaagcct actaactcaa tcggcagatt caaggttgat agcaccacaa tcgccgcaaa
     1021 agttgcacca ccacctacac cggcaatgcc aaatgaggaa attgccacca ccaaaatcaa
     1081 ggttaaaata tagtttaagc taaacggatc cattcccact gttggagcga ccatcaccgc
     1141 caacattgcc ggataaattc ccgcacagcc attttgcccg atggttgccc caaaggttgc
     1201 agaaaagttg gcaatcacac tgttattacc taatttattg gtttgcgtct caatattcaa
     1261 cggaatggtt gccgcactgg aacgagacgt aaaagcaaaa cttaatgtcg gcaacacttt
     1321 tttgtagtaa tccaacgggt tgattttagc cacaaagagt aaaataccgt gcacaataaa
     1381 catcaaacca atcgcaatgt atgatgccac aataaagcta cctaaattta caatatcgct
     1441 ccattgagaa gttgccgcca ttttgatcat caacgcaaat acgccataag gggttaggcg
     1501 aatcacaaaa cgtactaaac gcataaccag tttatttaag gtctctacac cttgtgcgat
     1561 acgttcgccc aacgctttat cttctttgcc taagctcagt gcagcaatgc ctagcagagc
     1621 cgagaaaata accgtgttga tgatcgacgt tgggtttgca ccggttaatt ctaaaaacgg
     1681 atttttcgga atgaaagaaa gcaacattga aggcacagat aagttgctca cctgctccac
     1741 acgccctacc actttctctt gagcggcaag ctcacgggag ccggcgacta aaccctcggc
     1801 agataaatca aacagataca ctaaagcaat accaatcgct gcggcaatcg cggtggtcac
     1861 taataacact gatagcacac taaaactaat tttgcctaaa gatcctgcct cttttaagcg
     1921 ggtaattgcc gataaaatag agacaaacac caatggcatt acgatcattt gtagcaagcg
     1981 aacataaccg ttaccaatta agttaatcca atcaagagtt gcatcaacag tagctttttc
     2041 gtaaaaagtt tgcaaaaaag caccgcttgc aagccctaaa aataacccaa taaacactgt
     2101 ttgaccgagt ttttgcgtag atttataaat tttagccaat aaaaataata ttgccgcaaa
     2161 gacaattaag ttgaaaataa gcacagaacc tccaaagtaa aaccgcttat tataaaaatg
     2221 ccgcaagggt attacgcttg cggcattcat tcaagatgat ttattacttt ggtataacta
     2281 aaagttataa taattcccag cttagattag agatcaaacg gcaaggctca catctaaaat
     2341 ggaaaatatc gtgcaacggc tcagttaatt tccattctcc gccacaacaa gggcatttgc
     2401 gttgatattc actttcatca cgccctaaac ggtagaggta ataaaaggtg ggaatgtgag
     2461 ttttctgctc aatttgctga catagatctc gaccgatcat tgcaagatcg cttgtttcat
     2521 cactaatttg aacaagtgcg tggcactcca gcagattgcc gttcatttgt agcagatcgc
     2581 acgcttgcca attttgctgc cattccaata tcgcttcgct aagagactga tcctgtaaag
     2641 aataaagcgg aattggggca aactgctctc catcataaag tggcgagcag gtatctaaat
     2701 gggtggtata taatatttga aacgctggcg agcggttatg actgctttct tcgccctgat
     2761 aatctcgccc gacaagctca aaacttgcaa aaattacgcc gatttcgacc gcttgttgca
     2821 acgcttcatt tacttcatca ctattatatt gtggcaaaag gctttcttgt gtaggcacac
     2881 aaacccgagc ttgaaactcg ttttgatgaa aagtaatcgg catttctctg ccaatgactt
     2941 gcccgttata taaccattga tttaagattt ggctaattgc cgtcaccgga tcttgctcaa
     3001 aattatgata gctgaaatgc actatcgcct gatacattaa atattctccg ccatatcttg
     3061 aaattcttgt ttgaccaccg tagtcggctc ttgatgaata atcacgtgag acatcggaaa
     3121 tgccgccagc aatttctgct caaggctatc agttatttcg tgagctacta gcagcgttaa
     3181 gtgatcgtct aattccaaat gtaattggat aaaacgcact gcacctgcac ggcgggttag
     3241 aatatcgtga atccctaaaa tgttcggatg ttgcgaagca atctctttaa tccgctcaat
     3301 ttcttcatcg ggcaaagctt ggtctagcaa ggtttgcacc gcacaccaaa acatttttac
     3361 tgcattgaaa gcaatgtaga gggcaatacc tattgcaaaa actgcatcgg cgtacacaaa
     3421 accggcacta ttaagcaaca ttgccactaa aattgccgca ttcattaata aatcagtttg
     3481 gtaatgtaac gaatccgctt caatcgccgg acttttcgta agcgtgacaa cataacgctg
     3541 ataaaagact aaaagtgcag taatcacaat tgatacaata ctgacaatta ccccaatact
     3601 cgattgagca attaattccg gattggtgag tttatggaaa ccttgtagca gtaggaaaac
     3661 cgccgagccg gaaataaacg cactttgggc aagtgccgcc aaagactccg ctttgccgtg
     3721 cccaaacgcg tgattctcat ctgccggttg tagtgcaaaa cgcagcacta aaatattggt
     3781 tagcgaagca aacagatcca ctaccgaatc cgtcattgct gccaagattg aaatcgaacc
     3841 ggttttccac catgcaaagg ctttaatcac aatcagtaag atcgcaacaa taatcgctaa
     3901 attcgctgca tttttgacta atttgctgta tttttcgttc atttactaca ttatttactg
     3961 cattggactt gccaacccag ttggtttaat tcaagagaaa gtctagcaat ttcttggctg
     4021 taagcggtca aattcggcga tttttttgca actgtcttgc caacttcccg cttatctgca
     4081 aattgaatct gcccgtaacc acaagctaaa ttccgcccac gggttacttc taacatcaca
     4141 ttgttaaaac gttctatagg tggataaatc acactgctgt gtaattcatt ttgctgaatt
     4201 tccactttcg cctcaagctc cggctttttc gcaaaacttg cttggcggaa tgcagctcgt
     4261 tgctctaagg tttgattttt actgttttta tctaagaaaa ataaaatgcc tttttgccaa
     4321 ttttccggat ttttctcact cttttctggc aaataaagta aatgttgcat ttcatcaatt
     4381 tggctgtggg tgacttttac aaaagtatcc tgcccaaagt gaatagcatc aggcactgca
     4441 aattgtgggc tttggctgac acaacctgcc aatgataacg caaccaaagt tattcccttt
     4501 ttgatagccg acattatgcc tgctcctcac gtttaaagac tagctcgctt tcactagaac
     4561 tgtctgcatc aaaccaatag cccccgtagt taaactgttt gagctgttcg atgctagtcg
     4621 gttgggtgtc taatataaag cgaaccatca ttccacgggc ttttttggca tagaagctga
     4681 tcactttata tttaccgttt ttctcatcta aaaacaccgg cttgataata gtcgcattta
     4741 gattttgtgg cttaaccgca ccataatatt catcagaggc aagattaact aaaatatcat
     4801 cgccttgttc atcaatcgct tgctgcaaat tttcagtaat aatattgccc cagaaagcat
     4861 aaagatcttt gcctttcgga ttggctaact tagtgcccat ttctaaacga taaggctgca
     4921 ttaaatctaa cggctttaat aaaccataca agcctgaaag catacgcaaa tgttgttgag
     4981 catattcaac ttgtgctttg cttaacgttt ctgcctctag tccggtataa acatcacctt
     5041 taaaggcaaa gagggcggct ttggcatttt gttcgttatg ctcaagctgc cactcggcaa
     5101 agcgagccac atttaaagcg gctaatttat cgctaattga catcaaacta cctaattcag
     5161 caggtgaaag ctgtttacaa atatcaatta attcttggct acaagcggtc aaatttggtt
     5221 gagaaaatgc aaaaccgtca atattggttt taaaatcaag ggttttggca ggggaaataa
     5281 tggctaacat aaatgcctct atcaaatagt taatcagggc ggttattcta ccacagtcat
     5341 aaagacaaaa aaggcaggaa accctgcctt cttgaaaacg aaaagaaaag tcgggtagcg
     5401 aaagtacatt actgcacctc cgccccctaa gaactgtaca agcaaatttc tctgcataca
     5461 gctcaagcct ttcatcagct atatagccgg cttcacgacc tccaagttca aagtatgaat
     5521 ctttatgtga caagtcggat gtaccaaaca acgattgctt aatgcatcgc ttcctcctaa
     5581 cattttgtac acgatatgat gatcgtgcca gcctgtttct ttggttattg gcaacccaca
     5641 taatgcacat tttccacgct ggtctttata cagtgcctgc cattgtcgtc tgtgtgattg
     5701 ttcttcatac agacgttctt ggctcagttt ttcgccgtac aactcccatt caggcaaaaa
     5761 cggattatat tcagacttaa ttttaacgtg tcgtttgatt ttaacatagc cacaatagaa
     5821 taagtctatc ggcttagttt ctcctttttc attggtataa actgtgccaa atacccaatt
     5881 tcgagtcgct gtggtacaaa agtatttctc ttttatccac ataatacctt tattgtgatg
     5941 acggcgttca caccatttcc aaagtacttt ccaaactaat gcgtccattc gtccgaatgc
     6001 cttacttgca acttggcttc gatgataatt tgcccaacct cgtaacattg ggtttagcac
     6061 cattataaga tcttcctgtt tagccatttt catttagaaa ttacctcttt taccttgttg
     6121 tagaacgctt tcacattctt ttgacttggt ctgttcagta tttttccttt gaaacgtctc
     6181 acattccaac ctagaaaatc aaaaccttct tcaatatgta ccactttcgt cttttctgtt
     6241 gataaggata aacctcgttc attcagaaag ttctggataa gtgggataac ttgattttca
     6301 agtaactctt tcgttttacc tgatatgata aagtcatctg cataacgtac taagtaagtt
     6361 ttattttctc gaattgtccg actgcctttt cctccaaaat gagtttctaa cagtttttcc
     6421 aatccatcta atgccatatt tgcaagcgtt ggcgagataa tcccaccctg tggtgtacct
     6481 tcctctgttc gtttcaaccg tccaaattcc actacacctg attttagcca tttccgcaat
     6541 atccgtttat tcattggaat atgctttaat agccagtcgt ggcttatgtg gtcaaaacaa
     6601 cctgcaatat ccgcatcaag tacccactca acaggttgat tagttttctt gcctttatgc
     6661 gaataaattt agtgtatatg agtaatagca tctaccgttg aacggtttaa tctaaatcca
     6721 taagaacctt tatccgcagt tgtttctgcc acaggttgta ttgccaataa ataaagggct
     6781 tgcattgctc tatctcgcat tgttggaata cccaacggac gtttctttcc attcggtttg
     6841 gggatataca ctcgtcttaa tggactaggt ttataccctt tttccgtcaa tgatagtgcg
     6901 gcttgccatt ttgtctctgg ggtctcccaa agctctttat cgacaccact tgttcgctta
     6961 ccttgatttt cagtcactct tcttactgca actaatttag cataatgtga gtgggttagc
     7021 attcgttgta agtttttaac cttacgccaa ttgccttcca gtgttgcctt cgcaatccga
     7081 atttgcattc ctttcacata cgtttcagct ttatgccaat cgacataatg ccatttggag
     7141 atgtgcgagg tcgctggatt gcaagctaac ttttcagtat aatgcttacg ctctttcata
     7201 cctacctctg atattacaag ataagtcgaa agtctcagca agtgggtaga tccttcaagt
     7261 aaacaaatcc ctattgagat aaactatcct tagtttattc cctttggtta caagaggatc
     7321 ttaccgtttt accgataatt tcaaccgctc ttgtaaccga ttgggttaaa gagtcgagcg
     7381 ctaggttatg atgagcctaa cgctcatttc tttaatttgt ttttgtacct attcaacatt
     7441 gtattccttg ataacattca atttctcttc tgttatctac aatctctttc ggtgttaccc
     7501 ttaaaggaaa cgctattcat cttacgatga aagaccagtt agaagtctgc accctttcgg
     7561 gttaggctat gtttcacacc ctatctatgc cattacagca tagcattcgc tttttctaac
     7621 ctcccttacc tgcattccca acagtatcgc ttacgcttta cttgcctttt cctcttttac
     7681 cttcgccatc tatttcaaac ggtttgagta ttgtgggcaa ggcagaaata caggcttacc
     7741 aagttccatt actatcacac gagtagtgaa gatacagtct ctcccccgac agtgctttga
     7801 tggcgtatcc tcacgttaaa gaagaataac cgactgccta ccttttggtc agagcctatc
     7861 aatagctttg gctctctctc gataacgagg tttatcaact gttcacttac gtttatcttt
     7921 ctacccagtc tagccccttg aaggtgtgct attcactttc tcccaatgtc ctctcacgat
     7981 ttcattgact gattttcatc aggggttcat tgtcaggaag ctccgcacca caccgttacc
     8041 ggtgtcgcac tatccctaga ctactgttag ccatataaca ggttacctta tcattccctc
     8101 cgtactactc atatcttcgg attgtttgac cgtaacaatg acagtaatag cttacgcata
     8161 cttactaagt cagtatccta tactgcataa ataagtccga acctttacaa aataaattca
     8221 cttatgcgac taaagtcgct ttgtctatat ccaaattttc ccgcaaatag cctataacct
     8281 gtccaatagg cgaaggtagc taaccctagc taatgtgagt attagaggtg attttaacga
     8341 gaatttaagg tataattatc cctagctcat aaaaacgaat aaacaagagt ttatccttag
     8401 tgtttttatt cactattgag gagcattcta cgattaccgt agattgcgag tgtgaaaagt
     8461 ataagtaaag atggcactcc ttccctaaga tttaccaagt cttagttctg atgtcttttc
     8521 tgagtgctga ggcgatctat tggactttat ttatagtagg tgttgtaaat tttctctgct
     8581 ctggggtatg ggtaactccg gtctgcggat cttgctttct tactctatct tggtattaag
     8641 aaaaaaacca agtacatcaa agtgaagatc ataccttaca gcctttcgag ttggttcatt
     8701 tactttccca acttagaaca agagtgcttg ggcaaagccc cttttctctt gcctgtcttt
     8761 ccaagcactc cgaagagtgc ttggaaagtc ggaagcaggt gataagaata ccacccactt
     8821 ccagcaataa ctccttgata tataaggagt tattgccata agtacgacaa cttgtcgcac
     8881 ttaacgtttt gagtattgtg gacgacgacg tgctttgtgt aaacccactt ttttacgttc
     8941 aacgcgacgt gcgtcacgag taacgaagcc tgctgcacga agtgctgggc gtagcgtttc
     9001 atcgtattcc attaatgcac gagtgatacc gtgacggatt gcacccgctt gaccagaaat
     9061 accaccacct ttaacagtga tgtaaaggtc taatttatca gttaattcaa ccaattctaa
     9121 cggctgacgt acgatcatac gagctgtttc acgaccgaag taaacttcaa gtgaacgttg
     9181 gttgatagta atgttacctg aacccggttt gataaataca cgggctgaag agcttttgcg
     9241 gcgacctgtg ccgtagtttt gatttgctgc tgtcattttt atgctccgtg aattagatat
     9301 ctaaaacttg tggttgttgt gcttggtgat tgtgttctga acctgcgtaa acttttaatt
     9361 tacggaacat ttcacgacca agtggacctt ttggtaacat acctttcact gcgatttcaa
     9421 tcacagcttc aggacgacga gcaatcattt ctttgaaggt tgcatctttg atgccaccta
     9481 catagccagt gtgccagtag tagattttgt cagtttgttt tttacctgtt actgctactt
     9541 tgtctgcatt gatcacgatg atgtaatcac cggtatcaac gtgtggagtg tactcaggtt
     9601 tatgtttacc acgaagacgg cgtgccaatt cagtcgctaa acgacctaat gttttacccg
     9661 tcgcatctac tacataccag tcacgttgta ctgtttctgg ttttgctaca aaagttttca
     9721 ttaattaaat accaaattta aagtttaaaa cccaatacct cattgaggta tttcctatta
     9781 ttttacggtg aacccgaccc cttcgagtct gattcagacc aaacttgtgt ggcggggaaa
     9841 accacacaaa aacagggtgg cgaaattata cagagatttc actcaaaaat ctaacatttt
     9901 ttgctgataa tctttcaaaa ttgaacctat atcacatttt aatcatttgg agcttttcaa
     9961 ataaaaactg aaatgttaaa aatagcagta atcaatcact aaaacataag gagtttatga
    10021 tggaacaatg gacaacagat gtttgggcag ccattatggc agcatttatt gtaggtgctg
    10081 taataggttg cactctagtt agagtattta acagtagtgt cagaaaacag catgaactgg
    10141 aaaaagagtt gaagcaaacc aaaactcaag tggatgagca aaaacaaaaa cttgaacaac
    10201 actttgagca atcagcccaa ttactttcaa gtctagcttc tgattataaa aagctttata
    10261 cccatttagc acaaagctct gaaaagctat taccagaagc atcaaaaaat attacctttt
    10321 tccaacaaac caaattacct attccggcag aaaaaacgga agaagatcaa cctagagatt
    10381 attccgaagg ttcatctggc ttactgaaat cataaaacta aaaattgaat atttagtttt
    10441 actaaaaggc acttagttta aggattgatt ccgttggaat caatccttta ttctaaaccg
    10501 ctacattaag cagttaacaa catttttcag ctttagatac tgaacttagg ttataagaag
    10561 cctattttgt aagagttatt cccactcaat ggttgccggt ggttttccgc tcacgtcata
    10621 caccacacgg gaaataccgt tcacttcgtt aataatgcgg ttggagattt tgcctaatag
    10681 atcatacggc aagtgcgccc agtgagcggt cataaagtcg atggtttcca ccgcacgcag
    10741 gctgacgacc cagtcatatt tgcgtccatc gcccattacg cccaccgatt tcaccggcaa
    10801 gaataccgtg aaagcttggc tgactttgta gtaccagccg gctttgtgca gttcttcgat
    10861 gaagatcgca tcggctttac gcagtaaatc gcagtactct tttttgattt cgcccagcac
    10921 acgcacgcct aagcccgggc cggggaacgg gtggcggttg agcatttcag ccggtaagcc
    10981 gagtgccaag ccgattttgc gcacttcgtc tttaaacaat tcacgcaacg gttcgactaa
    11041 gccgagcttc atataatccg gcaagccgcc aacgttatgg tgtgatttaa tcacgtgggc
    11101 tttgccggtt ttgctggcgg cggattcaat cacatcaggg tagatcgtgc cttgtgcaag
    11161 ccatttgacc gagctaagtt ttttgctttc gtcatcaaac acgtccacaa acactttacc
    11221 aatggttttg cgtttagctt ccggttcgtc taagcctttt aacgcttcta agaaacggtc
    11281 ttcggcattc actcgcacaa tgttcaaacc gaatttgttg ccgaacattt ccatgacttg
    11341 atcgccttcg ttcaagcgga gcaagccgtt atccacaaat acgcagtgca ggtttttacc
    11401 gatagcacga tgtaatagca aggcggtgac ggaggaatcc accccgcccg acaaacctaa
    11461 aatcacctcg tcatcgccca cttgctcacg aatgcgtttc accgcatctt caatgatgtt
    11521 ttctgccgtc cagttcgttt cacagccgca aatgccgacc acgaagtttt tcagcaacgc
    11581 caagccttgt ttggtgtggg tcacttcggg gtggaactgc acgccataga aacggcggct
    11641 ttcgtccgac atcgcggcaa tcgggcaggt tggggtaacg cctgtgatgg taaagtgcgg
    11701 tggtaatttg gtgactttgt cgccgtgact catccacacg tccaattttg gctcgcaagc
    11761 ggtcaaatca tcgtttaaat ttgcaaaaag ttgatcggca gatttgagag ccaccgaggc
    11821 atagccaaat tcacggtggt cggacgtttc ggttaaaccg cccaactgca tcgccattgt
    11881 ctgcattccg tagcaaatgc ccagcactgg cagaccagcg ttaaacacat actccggcgc
    11941 tcgtgggctg ttttcctcag tggtgctttc aggacctcct gaaagaataa tccccgttgg
    12001 gttaaattca cggatctgct cttccgttac gtcccaagcc caaagctcgc agtaaacccc
    12061 aatctcccgc acacggcgtg cgataagctg agtatattgt gaaccgaagt ctaaaattaa
    12121 aattttgtgg tggtggatgt ttgtcattgt aatttccttt aaattatggc gttgtggtca
    12181 tgttaataaa agtgccgcct accccatcgt ttctatatgt aataataaaa gattgcgttt
    12241 tattacaacc tgttgcagtc caaagttctt ttgcattacc ttcacttgga atattgatga
    12301 tttttgtatg aattttatca ggagtacatt tatgtattgc ttgaaaatac agatttatat
    12361 ttctttctgt gtccaacttt aataaaggac tggccgttgt ttctcctgaa taagatggtc
    12421 cgaaaatact gcacgcagat aaagcgacga ttgaaattaa acttaatttt ttcattctat
    12481 ttatcctatt aatattaaaa tatccactct catttctagg ttactcaagc cgatagactg
    12541 ttccaagtac ttgaagtaga aacattgaca aaatttctat aaaaatcgac cgtttattaa
    12601 cttggagtat tacatttttg aagaatcttc aaaatctctt tcatatcttt gcccatataa
    12661 tccgctaaac tttggtcaat cagtattcgt ttttcttcgt aaccaatcac cgttaagcct
    12721 gcggttttgg cggcgagcat tccgtagtag gagtcttcaa tcgccactgc attttgtggc
    12781 tcaacgccta atttttcgca ggtgtagcgg taaatggttg ggtctggctt gctgtgttca
    12841 aactgttcac cgctgacgat taaatcaaat tcgtctttaa tgccgcaaac cgtgagaata
    12901 ttttcaatat gcgaaagggc ggaagaagag gcaaccgcaa gcttaatttg attctgcttg
    12961 gcaaattgaa taatttgctg aatatcggct ctgaaaatgg ttttaaaatc cactttgcta
    13021 aacagatctt ggaaaaaggc gtagtaacgt gcacgaattt cctcaatcgg caaactggat
    13081 tcgcttagtt ttttgataat caccggaatt tcttttaaac atttgcctac cacttccgat
    13141 tgttgttcta aagtaatcgg gcggctgtgt tctttgatgt cttcaataaa ctgtttttgt
    13201 aaggaaaatt ccagatattc ggtatccaca atcacgccgt ccatatcaaa aatgatagct
    13261 tggagcatat agcctctttt gtaaaatttt aagaaaatct aaccacttat tccctctctc
    13321 tgttttaaat tactgaacgt aatttaaaac ggtctctctc ccacaagggg agagagtgag
    13381 aaaggctatt aacccattcg gtagttcggt gcttctttgg taattgtcac atcgtggacg
    13441 tggctttctt taataccagc accactaatg cggacaaatt ctgctttggt gcggagttct
    13501 tcaatagtgg cacagccggt taatcccata caggagcgta agccgcccat ttgttggtgg
    13561 ataatttctt tcaagtagcc tttgtaagcg atacgccctt caatcccttc cggtacgagc
    13621 ttgtcggcgg cattatcaga ttggaaatag cgatctgacg agcctttact cattgcacct
    13681 aatgatccca ttccacggta ggatttgaat gctctgcctt gataaagctc aatttcaccc
    13741 ggggcttctt ctgtgccggc aaacatcgaa ccgaccatta cgcaacttgc accggcggca
    13801 atagcttttg aaatatcgcc tgaataacga attccaccat cagcaatcac aggaatgcct
    13861 cgttctttaa gcgcagctgc cgcttctgcg attgccgtga tttgtggcac gccaacgcct
    13921 gttacaattc tggtggtaca aattgaaccc gggccgattc ctactttcac agcactggct
    13981 cctgcatcag ctaacgcaat cgctccttct gcagtggcaa tattaccggc aacaatcggt
    14041 aaatcagggt attttgcacg ggtttcacgc acacgttgta atacaccttc agaatgcccg
    14101 tgcgaagagt cgattaatag cacatcgaca cccgctttta ctaaagcatc aattcgttct
    14161 tcattgcccg gaccggctcc cactgccgcc cccacacgca aacgcccaaa ctcatcttta
    14221 caggcattcg gtttgctttc cgctttttgg tagtctttta gggtaatcat tccttttaac
    14281 tgaaattcat tattcactac cagcactttc tccactcggt gttcgtgcat taagtggaaa
    14341 atttcttcac ggcttgcgtt ttcttttacc gtcactaaac ggtcttttgg tgtcataaat
    14401 tcacgcactg ttttgcttaa atccgtgaca aatcgggtat cacgtccggt aataattccc
    14461 actaaatttt ggttttcatc aatcaccgga tagcctgcaa aaccgttctt tttcaccaat
    14521 tcagccaatt ccgctaatgt catatcagga gaaatcgtca ctggctcaga aacaatacca
    14581 ctttcaaatt ttttcacttt acgcacacgg tctgcctggc gttcaatcga catattttta
    14641 tggataaaac caatgccgcc ttcttgagca agggagatcg caagcttagt ttctgtaacg
    14701 gtatccattg cagcagaaag catcggaatg tttaaacgaa tggttttagt taattgagta
    14761 gaaagatcag cagtattagg aagcacagta gaatgtgccg ggacgagaag aacatcatca
    14821 aaagtgaggg cttcttgttt aattcgtagc attgcaatta ttccttaaaa aatgattaaa
    14881 ttgaaaatct gtactggaaa attgcgagcg gattatacag aggaactagg tttctgtaaa
    14941 tagggaaacg tttacgctat ctgaaaatat actttcaagc ggttaaattt tgtgattttt
    15001 tagcaaacaa taaataaaaa acgaccgctt gtaagccaac aaaaaagagc gtatcgctac
    15061 gctcttttgc tatttaaaac tatgcttctt ttgtcgttgg gaaatatttt tcctcgtcaa
    15121 attcacgtaa tggcttgtgt tcttgcccta agaaagtgta gataaccggc aagataaaca
    15181 gagtaaacaa tgtcccgatt gccaagcctg ctacgattac catacccata ctgaagcggg
    15241 cgattgcacc ggcacccacc gcaaacagaa gcggaattaa gcctgcaatc attgctgccg
    15301 ttgtcatcat aattgggcgt aaacgaatcg tggctgcgtg gaaaatagct tcatagcgtg
    15361 atttgccgtg cagtaactgc tcttctttcg ccacttcaca catcaagata ccgtgtttag
    15421 taattaagcc gacaagggta attagaccta cttgtgaata gatatttaag gtataacctg
    15481 ccgtccaaat accgttggcg aatgccatca tatctttcga gccagtgcct gctgcaatcc
    15541 ccataaacaa gcctttcatt gcggttggaa tgttcattac caacaatgca ccactcacag
    15601 ctaacggcac agaaaccaaa attactaatg ggtcacgcca agattcaaat tgaattgcaa
    15661 gtacaagata gataatgata actgctagag cgaaagtcat tgccatcgca ttaccttctt
    15721 gaacgaactg gcgagattca ccacggaagt catattgata acctgatggt aaagtgcgat
    15781 ctaattctgc tttcgcccaa tttaccgcat cgccgattga gccagatact accccaccaa
    15841 tggtggccga gtttaattgg ctcatacgag gtaaagaaga tggtgatgtt tttaattcca
    15901 tcgtcacaaa tgaacctaac gggatagatt gccctgttgc agtcgtgaca tagtaattca
    15961 ttaaatcttc aggatttaaa cgatcattac gcaccgcttg cgacacaatc gggtaagcac
    16021 gagagtcaat atcgacacga gtaataatcg caccggataa gaatgcccct aatgtgccac
    16081 tcacctgctg cattgtcacg ccataagcac ccattttttc acggtcgaat ttcatattca
    16141 tcgtgaccgt atcaaatttc aaatctaaat tcgcaaagaa gaactgaccg gaagtttggg
    16201 cttttttcaa gaattcagag gcaacgattg ccaatttttc atagctatca gcggtagtaa
    16261 tcactaatga gaatggtaga tcattttcac cggttgaaat ttcagggaat gcaattgcat
    16321 tcacgtccat acccaccact tttttaccga ttgcagccac atcattagaa atcgcagcac
    16381 gttcacggct acgatcattc caatctttta atgcaataat cgataatgca ctatttgcac
    16441 cattaaagcc tgaaactgtc attaaggaag atacttcagg taatttagtt acttcctgat
    16501 taaattgggc taacgctgct tcggtataat ctaaattggt gtttgaaggt ccattagaaa
    16561 taccaaccac aaagccacgg tcttctgtcg gtgcaacttc actggaaagt gagccaaata
    16621 acatcggtaa actggcgaag atcagcaccg caaagaataa gacgaaacca cgaacagcca
    16681 taataccgct tagcatattg gtatagcagc tggtcatttt atctagtgat ctatgcacca
    16741 cgcgggcaaa tgctgactct tccccttctt tatgttcttt taatattcgg ctagacatca
    16801 tcggcgaaag ggttaatgcc gcaatccccg aaataaatac cgcaccggca agcgttaaag
    16861 cgaactcttt aaatagtgtc cctgttaccc cggtcattaa tgccattggt gaatatactg
    16921 cacccagagt aatagtcatt gaaataaccg gtaaagcaat ttcacgtgta ccgataatcg
    16981 ctgcatcaaa tggcgtttta ccttctttaa cgtgacgttc tacgttttca agtacgacaa
    17041 tcgcatcgtc cactaccaag ccgatcgcta ataccaacgc cagcaaagta agcaagttga
    17101 tcgagaaacc aaacatttgc aggaagaata ataccccgat taaggaaatc ggaatggtaa
    17161 tcaccggtac aatcattgct cgtaatgaac ctaagaacag gataattact accaatacaa
    17221 tgacggttgc ctcaccaata gttttaatta cttctttgat agaactatca atcgcaatgg
    17281 ttttatcgta aacaatatct ccttgaatgg tgcttggtag attttttaat acctgctcaa
    17341 acatcggata aatatctttc gctacggtta aagagtttgc cgttgcggct accgaaacag
    17401 caagcacaac tgcatcttta ccgccaaccg ttgctcttgc tgcatcttgg tatttatcca
    17461 gctcaacagt cgcaatatct tttaatttga tggtttttcc atctttggtg gttgaaaccg
    17521 taacctcttc taactctgtc acagaaggcg tggtagaaag tactttgttt ctataaaccg
    17581 tatagtaacc gttagaatta cccgcagcgg tttgcaagtt attggcactt aatgccgata
    17641 atacagccgc ccctgatagg ttattgctcg ccattttatc cggatcaagc cagatgcgta
    17701 agccaaaaac agagccatac acatcaacgc tagaaacacc atttaccgta aagaactgtg
    17761 gttttactac acggttaata taatcggtaa cttgtgatgt attaagttca tcagagacaa
    17821 atcggatata cattaacgca tcatttgaac cggttgagac tctaattgac ggatcatcaa
    17881 taccgctcgg taaatttgag cgtaccgcat tcacttttgc cgaaatatcg gaaagtgcgg
    17941 cattcggatc ggtatttaac ttcatttttg ccgttaccgt agtggtactt ggagagcttg
    18001 atgaagtcat atagtcaata ttatccgctt gagcaacagc ctcttctaac tgtgaggtaa
    18061 ccagtgtctg cattaaacgt gcatctgcac ctgaatagtt aacactcacg gttacaatcg
    18121 agaccgtcat ctccggatat tcacgcacct gcaatttttc gattgcttgc aagcctagga
    18181 tcgtaatcaa taggctgata caaactgcca aaacaggacg tttaataaag atgtcagtaa
    18241 atttcactta actcactcca ctacagttta ctgtttttcg ccggtgtggt aatgcctacg
    18301 gcttctgtat cagaaacttt aaccaacgca ttattactta aacgttgtaa accgcctgtt
    18361 acaatcagat cacctgcttt cacgcctttg gataattgtg aatagtttcc tttgcggtca
    18421 gccgttttca cttccatctg ttttgcacgg tacattttgt ttacatctaa acttgggttt
    18481 tgtaccgcca ttttgttcac catttcttta tcttcatcag ataatggttg cagcacatat
    18541 accgtttcac catacatagt gtaagcgata gaaatttgtg gtacgacgat ttgtccggtt
    18601 tctgttggta aagcaacatt taagcgggca aacatacctg aaagcaattt ttcctgccct
    18661 tcttcaatca ccgcttccac attaattaag ccggttaaac gatccacagc cggatcaata
    18721 gccacaattt tagctgggaa ggtttgtgcc ggtaacgcat caattacggc tgtcactttt
    18781 tgcccaatcg agatttgctc taaattagtt tgcggcaagg taaaacgtac tttcattgaa
    18841 gattgatctt ccacacgcac aatttccgta cccattgtaa tgtattgccc aacattcaca
    18901 ttcacgatac ccgctaaacc actaaacgga gcataaattt gacggcgttt aatcgtagca
    18961 cgcaatgcct cgatattggc taataattgg ttgtaggtag attgagcatt atcaaactcg
    19021 gctttagaag cactgtttga ggcaatcaga ttacggtaac gctctaaatt tgctttggca
    19081 ttcggtaatt gcgcttcaga ggctctcaag ttagcaattt caacactgct gtcaaattct
    19141 actaacagat cacctttttt cacacgctgt cctgaagtga ccaaaacacg gctaaccacg
    19201 cctgaagttt cagcacttaa cattgcccct tgatttgggc gaatataacc gaccgcagaa
    19261 atggttggtg tccattcttg ggtcgtcact tgcatagcag taacttcgct caccgcctcc
    19321 ggcatatttg ccgctgcttc ggcttttttc attgccccga ttttttgtaa ccctacgatt
    19381 gcagcaaaca caatcaatac gattaacaat gtgagtacaa ttaaaaactt tctgccttta
    19441 cccagcttct gtgtttccgt tgtcatacat tctccataaa actaataaaa agaaacttaa
    19501 aaagtgattg ctttccaagt gcgtaaaata atctcgtcta aatatccatc aaactgattt
    19561 tcttgattca gattttgcag atattggata tccaccaatg tgccgatgct taatccataa
    19621 agcaactcat tagatagatc agcaataatc ctttgctttt tcccttctaa aattaattta
    19681 ttccaaaagg aagtttcatc agctatggtt tcccgaatca attcatcaat ccctatcacc
    19741 gcttgaaact gttttaccaa atctaaacgc tcgattaaaa actgccattt tttattgacc
    19801 aacgctttat attgctcaaa taacgccatt tcaggcttaa actcaaaatg catataaccg
    19861 ttataacatt cgagtaattg ggcagccaat gagtgcaata aatcatcttt ggttttaaag
    19921 taaagatata atgtaccgga agcgatccct gcttcttttg caatactacg cattgaaagg
    19981 ttttgcaaac cttcttgcac aatcagcgac tcggttgccg ataaaatacg gtttaccatc
    20041 tcttcttttg gctcgcttcg cctagacatt ttatctcctt acctataatg aacagccgtt
    20101 cattatagct ttttttatga aaaaagaaag cagaaaacac ctatcaaatt aaaataaaat
    20161 agttgcaaaa ttcctcattt attgaacaag cggtcatttt tggctaaaac tttgcaaaaa
    20221 tcactcaaac aataacgctt aacgctactt tattattatt tttgtgctac tatttgtacc
    20281 taattatagg atcatcttta tttcaatatg gcaacgaaat ctaaatacca caccaaacaa
    20341 tttgagcagc tattggctga cctcatcgcc accatagaaa agcataaagc accggtggat
    20401 ttatcgttaa tggcattagg caatatgata actaacattt taattgaaaa tattcaaagc
    20461 ccggcacaaa gagaagctct cgctgatgcc tttgccgatg cattaaaaca atcactaaaa
    20521 accaaataag atgatgtttg cacgcctacg cagtttattg ccgaccaatt ctcgccaata
    20581 tcgagaagaa acctcacaga aaatcacgtg ggggcattgg tttgcactat ttaatattgt
    20641 gttggcacta ctcatttcct ctcgttacgc atttaatgca gactggccga acacgcttgt
    20701 aggcaaactt tatttctttg tcagcctgtt cgggcatttc agctttgtgg tctttgcagg
    20761 atttctatta attctgtttc cgctcagttt tattgttaag aatcatcgca cctatcgtgg
    20821 gctttccgtg attttagcca ccatcgggca aaccgtgtta ttggtggata ctgaagtctt
    20881 caagcaattt tatctgcatt tatcaccgct tgtatgggat ctgttagtta atccggaaga
    20941 aggggaactg acccgtaaat ggcaactgct gtttgtacca atgccactcc ttttgctggc
    21001 agaaatgctc tactctcgct ggtgctggca gaaactgcgt agttttagcc gccaaaaatg
    21061 gggcaaatat gtcgctctct ttttcgtgat cagctttacc gctactcatt taatctatgc
    21121 gtgggcagat atgaatgcct accgcccgat taccgctcaa cgagcaaact acccactttc
    21181 ttacccgatg acggctcgta atttcttaga aaaacacggt tttattgacc gagtagaatt
    21241 taatcaagaa attgaagaaa gtggcagact agatactttc tatctgaatt atccaaaatc
    21301 tcccttgatt gcgaccaaaa cgccctcaac taatatttta ctgattaatt tatcaggttt
    21361 atctaaacag ataataaatg ccgaaacaat gcctaagctg acagaaatca gccaacaaag
    21421 ccaccgcttt atgcagcatt acagtagtgg tgattcagcc tctgccggtg cattaggtct
    21481 attttacagt ttaagcggta aatatttgga ttccgtttta gccgataaaa ccgtgtcacc
    21541 gcttatcgaa atcgctagaa aatcggacta tcaattaggg ctgttttcac ataatggttt
    21601 tgccgacccg atttatcatc aggcgatctt ctctggtatt ttattgccta cggcgcacag
    21661 taatgtaggg gcgattgggc aatggaaaaa ctggatcagc tctcgctcat tggaaaatcc
    21721 gttctttagc tatttagact taagaatgcc cttcgcccac accgctcaag agcaggcaaa
    21781 attattagat tggcaattcg ctgaaatctg gcaacatttg acccaaaatg cactattggc
    21841 gaatacgctg gtaatcatta ccgccgatat tagtaatgaa gttggagcag aaaatagctt
    21901 cgataaacaa cacattcaag tgccgatgat gttctactgg caaggcgaaa gcaaagagta
    21961 ccatttcctt tcaagccatt tagatattat gccaacctta ctgagccaat tcttcggcgt
    22021 gcaaaatccg ctgaatgatt atgcacaagg tatggattta agcacccaga accaacgttt
    22081 atgggtatcc agttctaatc acaaatggaa tgtggcgatt atgccgaatg gcgatcaata
    22141 tcaaattgat cgtaaaggca actttaagca ctttaacagc aatggcgaac acgagaaaga
    22201 tgctcgacca ccattagcgt tgttcttaca aatgattcaa caaagcaatc aatttattga
    22261 aaagtaatgt tcaacaagcg gtcatttttg caggaaaatt tgcaaaattt cagcaaaata
    22321 tgaccgcttg tcactatctg agctgtctat atttcaagct aacaaataca aaccaaacca
    22381 ttgctacaaa agcaatactc ccaccggcaa atccgatatt ggctaatccc agttgctgaa
    22441 tagcgatgct ccccagtaat gctccaccgc caatgcctaa attataagtg ccggaaaaaa
    22501 ttgcagttgc gacatcagtc gcatcagggg caagttcaag caccttcatt tgcaacgcaa
    22561 tgctcattcc ggtaatgcca attccccaga caaaagcgac cataaacatt gccactgttg
    22621 agtcactcaa aaacagtaaa caaagctggc tgcacataat aatggcgatc ccgcttaaga
    22681 taaatttatt cggggctttg ccatataacc gaccaaataa aaaacttgcc accacacctg
    22741 ccaagccaaa aaccagcaaa ataaaggtgg tgttttccac actcaccgaa ctgattttaa
    22801 tcataaacgg ctcaatatag ctgtaagcgg taaaatgtcc tgaaacgatc aatgccacca
    22861 gcaaataaat gccgattaac atcgggcgtt taaataacaa aggcaaactt tttatcgagc
    22921 ctgcattttt gcttggtaaa taaggcagca accgccaaat catcattagc acaatcaaag
    22981 cgataatccc aataatgcca aaggttgccc gccagcctaa ggcttgcccg atcattcgcc
    23041 cataaataac atcagcaaca gccgttttct ttccatattc gccgtgagta acatcaacgg
    23101 taacgataat aaaaatacca cccacgcata aaccgtcatc ataatgcctg ccgatgaagg
    23161 ctccatttgg aaactgcttg caatgtctga aagcaatgca ataggaataa attcggtggt
    23221 gtttactata aaagccgcaa aggcaagact aaatactcta aggaacgata atctccg
//
LOCUS       DANLXK010000022        22894 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.022, whole genome shotgun sequence.
ACCESSION   DANLXK010000022 DANLXK010000000
VERSION     DANLXK010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22894
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            63..656
                     /gene="hisH"
                     /locus_tag="PXD88_000752"
     CDS             63..656
                     /gene="hisH"
                     /locus_tag="PXD88_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL6280353.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
     gene            755..1600
                     /locus_tag="PXD88_000753"
     CDS             755..1600
                     /locus_tag="PXD88_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL6280354.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            1770..2519
                     /gene="hisA"
                     /locus_tag="PXD88_000754"
     CDS             1770..2519
                     /gene="hisA"
                     /locus_tag="PXD88_000754"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL6280355.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            2501..3274
                     /gene="hisF"
                     /locus_tag="PXD88_000755"
     CDS             2501..3274
                     /gene="hisF"
                     /locus_tag="PXD88_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL6280356.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            3271..3657
                     /locus_tag="PXD88_000756"
     CDS             3271..3657
                     /locus_tag="PXD88_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6280357.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            3685..4323
                     /locus_tag="PXD88_000757"
     CDS             3685..4323
                     /locus_tag="PXD88_000757"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL6280358.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(4397..5290)
                     /gene="hslO"
                     /locus_tag="PXD88_000758"
     CDS             complement(4397..5290)
                     /gene="hslO"
                     /locus_tag="PXD88_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL6280359.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(5534..5950)
                     /gene="hslR"
                     /locus_tag="PXD88_000759"
     CDS             complement(5534..5950)
                     /gene="hslR"
                     /locus_tag="PXD88_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL6280360.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            6038..6580
                     /gene="nudE"
                     /locus_tag="PXD88_000760"
     CDS             6038..6580
                     /gene="nudE"
                     /locus_tag="PXD88_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL6280361.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            6594..7412
                     /gene="cysQ"
                     /locus_tag="PXD88_000761"
     CDS             6594..7412
                     /gene="cysQ"
                     /locus_tag="PXD88_000761"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL6280362.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            7487..8974
                     /locus_tag="PXD88_000762"
     CDS             7487..8974
                     /locus_tag="PXD88_000762"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL6280363.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            9114..9812
                     /gene="pgl"
                     /locus_tag="PXD88_000763"
     CDS             9114..9812
                     /gene="pgl"
                     /locus_tag="PXD88_000763"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL6280364.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            9988..10875
                     /locus_tag="PXD88_000764"
     CDS             9988..10875
                     /locus_tag="PXD88_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL6280365.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            10885..11574
                     /locus_tag="PXD88_000765"
     CDS             10885..11574
                     /locus_tag="PXD88_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL6280366.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            11657..13111
                     /gene="gnd"
                     /locus_tag="PXD88_000766"
     CDS             11657..13111
                     /gene="gnd"
                     /locus_tag="PXD88_000766"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL6280367.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            13246..13839
                     /locus_tag="PXD88_000767"
     CDS             13246..13839
                     /locus_tag="PXD88_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL6280368.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(13910..16774)
                     /locus_tag="PXD88_000768"
     CDS             complement(13910..16774)
                     /locus_tag="PXD88_000768"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL6280369.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(16891..17589)
                     /locus_tag="PXD88_000769"
     CDS             complement(16891..17589)
                     /locus_tag="PXD88_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280370.1"
                     /translation="MKQNRKKSKKVIGTHKKENGLKQFIKNNKIPIILISAIWSIFTT
                     DILERIANMPIIWKNFEENYLYNKKLDGLWSTNTNYIIDYKLLNIPEEQPNVIIEFMV
                     NKDDNSILGEMTSTALCELIPLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELS
                     TFKIKEINSNLGTLTLTTQEDKTGIFPPTIKLINFSSNIEDDIKEIEQSCLNSRKQLW
                     EKRRKMQEEQKIPN"
     gene            complement(17834..18427)
                     /locus_tag="PXD88_000770"
     CDS             complement(17834..18427)
                     /locus_tag="PXD88_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280371.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
     gene            complement(18417..18587)
                     /locus_tag="PXD88_000771"
     CDS             complement(18417..18587)
                     /locus_tag="PXD88_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280372.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            complement(18589..19331)
                     /locus_tag="PXD88_000772"
                     /pseudo
     CDS             complement(18589..19331)
                     /locus_tag="PXD88_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            complement(19328..19771)
                     /locus_tag="PXD88_000773"
     CDS             complement(19328..19771)
                     /locus_tag="PXD88_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6280373.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            complement(19765..20202)
                     /locus_tag="PXD88_000774"
     CDS             complement(19765..20202)
                     /locus_tag="PXD88_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL6280374.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            20441..20884
                     /gene="lysM"
                     /locus_tag="PXD88_000775"
     CDS             20441..20884
                     /gene="lysM"
                     /locus_tag="PXD88_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL6280375.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            complement(20938..21789)
                     /locus_tag="PXD88_000776"
     CDS             complement(20938..21789)
                     /locus_tag="PXD88_000776"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL6280376.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            21882..22433
                     /locus_tag="PXD88_000777"
     CDS             21882..22433
                     /locus_tag="PXD88_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280377.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            22642..22736
                     /locus_tag="PXD88_000778"
     tRNA            22642..22736
                     /locus_tag="PXD88_000778"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22677..22679,aa:Ser,seq:gct)
     gene            22750..22826
                     /locus_tag="PXD88_000779"
     tRNA            22750..22826
                     /locus_tag="PXD88_000779"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22784..22786,aa:Arg,seq:acg)
BASE COUNT         6550 a         4654 c         5084 g         6606 t
ORIGIN      
        1 ggaaacagat atattgagtc aattttactt cactataaga aatacttaac tcaggaaact
       61 aaatgaccaa cctcaccatc atcgacacag gctgtgccaa cctgtcttcg gtcaaatttg
      121 cttttgaccg tcttggcatt cgggctgaga tctcgcgaga tctcaacaaa atccaatctg
      181 ccgataaatt gctactcccc ggtgtgggaa cagcagcggc ggcgatggcg atcttgcacg
      241 atcgccgact tatcgacacc attcgcaacg ccacccagcc gatgcttggc atctgcttag
      301 gaatgcagtt aatgacggac ttttcccacg aaggcgatgt ggcaacactg aacttaatga
      361 gtggcaaaac cgaacgcttg cctgaatgcg gtttgccgtt gccgcatatg ggctggaaca
      421 aggtgcaata ccaagccgac catccgctat ttcacgacat tgagcaaggc aatcatttct
      481 attttgtgca tagctacggt gtgctaccga atgagaacac catcgccacc tgcgactacg
      541 gcgtgccgtt ttccgctgcc attgccagcc aaaacttcta cggcgtacag ttccaccccg
      601 agcgttcggg cgaggctggg gcgaagttgc tcaggaattt tgtggagaat gtctgatttt
      661 gtgatctcga tcgaaaagtt tgaaaatagg gcttgatttc tcgctttatt tcgacaaaat
      721 tactgttaat ttaaccagtg aaagaaggtg agaaatgaac gaaattaaac tatttgaaaa
      781 cagccaaatc cgctcggtgt gggatagcga aaaagaagag tggtttttct cggtggtgga
      841 cattatcgag gtgctgacgc aaagtagcaa tccacgccgt tattggagtg atttaaagcg
      901 gaaaatcaag gacgaagagg gcggaattga actgtacgaa aaaatcgtac agttgaaatt
      961 aaaagcccca gacggaaaaa tgcgggaaac cgatgccacg gatttacaag gcattttccg
     1021 tattattcag tctgtgccaa gcccgaaagc cgagccgttg aaaatgtggc tggcagaggt
     1081 aggcaaagag cggattgatg agattatcga tcctgaattg accattgacc gagctttggc
     1141 tacttacttg aaaaagggat attcccgtga gtggattaac caacgcttgc aagccattca
     1201 ggtgcgaaaa gaactgacgg atacttggca agatcacggt gtgcaagtgg gcagagaatt
     1261 tgcgattctc accaatgaaa tcacacaggc gtggagcggt atgactactc gccaatataa
     1321 ggatttcaaa gggctgaaaa aggaaagtct gcgagacaat atgacgacca ccgagttggt
     1381 gctgaatatg cttgctgagg ctgccaccaa agacatcgct caaatcagcc acccacaggg
     1441 cttggaagaa aataaaaccg ttgccaaacg gggcggaaat gttgcaaaag tggctcggga
     1501 aagtttggag gcagagaccg gcaaaccggt gattacgcaa caaaatgcga ttgatttcgc
     1561 tgcggtgatt gaacaagtgg cgaaacaggt gaagaaataa gtgcggtcgg ttttttgcaa
     1621 gtttttggaa gaatttgacc gcttgtaccc catacgagcc gtatggggct agataaacca
     1681 agctactccg tagcttagag aggcagtcgc agcgcgactg ggattattca gcctagcacg
     1741 gctcgtgcta ggcacacagg aacaataata tgcaaaaatc catcattatc cccgccctcg
     1801 accttatcga tgggcaagta gttcgcctac atcagggcga ttatgcgaaa cagacgactt
     1861 atgccgatga cccgattgcc caatttgccg actacttggc acaaggggcg gagcagttac
     1921 atttggtcga tcttacaggg gcgaaaaatc cggctcaaag acagaccgca cttatcggca
     1981 aaattattcg tgaaacccac tgcaaaattc aagtgggcgg cggtatccgc accgagcagg
     2041 atgtggcgga tttacttgct gttggagcaa accgtgtggt gattggttcg actgcggtaa
     2101 aagagcgtga aatggttaaa ggctggttca aaaagtacgg tgcggagaaa tttgtgctgg
     2161 cactggatgt gaacattgat gcaatcggtc aaaaaatcat tgcgatgagc ggctggcaag
     2221 aggcaagtgg tgtgtcgctc gaggagttga ttgaagatta tcaaaccgtg ggcttgcaac
     2281 acgttttatg caccgacatt tcccgagacg gcacgctggc aggttcaaat gtagatctct
     2341 atcgagaaat ctgtgccaaa tacccagaga ttcaatttca gtcctcaggc ggtatcggct
     2401 cgcttgccga catcaaagcg ctttgtggta cgggcgtggc tggcgtgatt gtcggtcgtg
     2461 cgttgttgga aggtaaattt aatgtagcgg aggcaatcga atgttggcaa aacggataat
     2521 tccttgttta gacgtgcgtg acgggcaagt tgtgaaaggc gtgcagttcc gcaaccacga
     2581 aatcatcggc gacattgtgc cactcgccca gcgttatgcc caagaggggg cggatgagtt
     2641 ggtgttttac gatattaccg cctcaagtga cagcagaacg gtggataaaa gctgggtgga
     2701 acgtgtggca caggtgattg atattccgtt ctgtgtggca ggcggaatca aaaccattgc
     2761 cgatgcggag cagattttcg ctttcggagc ggacaaaatc tccatcaatt ccccagccct
     2821 tgccaacccc gagctgatta ccgaactggc aaagcgcttt ggcgtgcagg cggtggtggt
     2881 tggtattgat agctggttcg aggcagaaac cggcaaatat tgggtcaatc aatataccgg
     2941 cgatgaaaaa cgcacccgcc aaaccgaatg gcaattgttg gattgggtgg aggaagtgca
     3001 aaagcgagga gcaggcgaaa tcgtgctgaa tatgatgaac caagacggcg tacgcaacgg
     3061 ctacgatttg gtgcaactga aaaaagtgcg tgaagtttgc caagtcccac tcatcgcctc
     3121 aggcggtgca ggcgaaatgg tgcatttccg tgatgctttt attgaggcaa atgtggatgg
     3181 tgcgttggca gcgagtgtgt ttcataaaca aattatcaat attggggagt tgaaggaata
     3241 tttggcgaag gaaggggttg aggtgcgtag atgattaaga ttactgcctt agatcatctg
     3301 gttttaaccg ttgccgatat gcaaaaaacc attgattttt atacgaccat tttgggtatg
     3361 caagaaatca cctttggcga taatcgcaaa gcgcttttgt ttggcacaca gaaaatcaac
     3421 ctccaccaaa aaggtgcaga aatcctaccc aatgcccaaa atgccgattg tggcacggca
     3481 gatttatgcc tcttaacggt aactccactt caggaggtta tctatgtgtt acagcgacat
     3541 caggtggaga ttttggaagg tgggattgtg cctcgtacgg gggcagtggg aaaaattgag
     3601 tcggtttatt gccgtgaccc tgatggtaat ttgattgaaa taagcctata tgtctaaaca
     3661 agcggtcaaa aaaaggaaga aaaaatgcaa aataaaatag actggcaaaa agtggacggc
     3721 ttactgcccg ttatcgtcca aaacgcccaa acctgcgaag tactgatgtt aggatatatg
     3781 aaccaacaag ccctcgaaaa aacgctggct gaaaagcgag tgacttttta ctcccgtact
     3841 aaacaacggc tgtggacgaa aggcgaaacc tcgggcaatt tcctaaacgt ggtggatatg
     3901 agtttggatt gtgataacga caccctgtta atcctcgcta accctatcgg cgaaacctgc
     3961 catacggggg cggagagctg ttttcatcag tttgaacaag aacaaccaga ttggatcttt
     4021 ttcagcaaat tagaacgaat gatagccgaa cgtaaaaatg ctgatccgga aagttcttat
     4081 accgctaaac tttacgccaa aggcacgcca aaaatcgtcc aaaaagtagg ggaagaggca
     4141 gtagaaagcg tgattgcggc aatgaaaaat gatcgggaag agttggtcgg tgaagtggct
     4201 gatctgatgt atcacttaac ggtgttattg cacaatgccg atctctcgtg ggcagagatc
     4261 aatgctaaac taaaagaacg ccacaaaggg attgggttac acccagaagg ctcaaataag
     4321 taaaatgcaa gcggtcaaat ttcaccgttt ttttacaaat tgcaaaaaag acaagaaact
     4381 tgaccgcttg tttagcttaa tttaacccta acttacttaa tttttcagtt tcttccttaa
     4441 agccttcaat cgccgctttg tcaaagaaat attgtgtccc gcagcattca cattgcatat
     4501 cgatcacgcc ttgtttttcc tccaacattt cttcgatttc ttctgccggc accagtaata
     4561 atgcggagcc tgaacgctct cttgagcagc cacatttaaa ttcagtatct tgtggtgggt
     4621 aaacttctac ttgctcttcg tggtagaggc gatagagcaa ttcttctgcc tctaaaccaa
     4681 ataactcttc atcttttacg gtttcagtga gcgtggctaa atgctcaaaa tcatctcttg
     4741 agcctgtgcc gtccggcata atttgtagca acataccgcc tgccactgct ttgccttcaa
     4801 attcgcctgt gcggataacg aggtgggttt gtaattgctc ggagcgggcg aagtaatctt
     4861 ctaaacattc acgaatggtt ggtttatcga gagcaatcac cccttgataa cgttcaccat
     4921 cggttgggat aatagaaatc actaatacac cattgccgat catttccgct aacgaggctg
     4981 tgtctgcaat atctgcctga acacgggcta aagcacggag ttgctgttgg tcgttaccgt
     5041 tcacaaccgc caattttaac gggctgtcac cttgaatctg cacagtaatg ttgccgttaa
     5101 atttcattgt tgcagtcagc aaactggttg cgactaacat ttctccgagt aaattttgta
     5161 ctgctttagg gtagtgatgg gtgtttaagg tctcggtaaa ggtgttgttt aaacgcaccc
     5221 attcgccccg taccgctcgg tctttgaata aatagcggta gagtttgtca ttgtctttgg
     5281 tgtaattcat tttgattcct cgttgcaagc ggtcgattat tactcacaaa attatttcta
     5341 attttgttcg ctcctacgga gccgttggca aagccaacgt tcaaaatgca ttgcattttg
     5401 tggctaaaaa tgtgcaaatc gaacgctgta ggggcgaatc aatgttcgcc cgaaataatt
     5461 atataggggc gaaaaatttt tcgcccctac ttaggatatt caatataggg attatttttc
     5521 tgattgcaag ggcttagcta aattcttgct ctttgaattt gattaaatcc cgccgttctt
     5581 ttttgtttgg acggcgatca gggtgtggca ttgaaagagc attcgctttg cgggcaaatg
     5641 ccattgcctc acggtgttta atgctttttt cggtttcact gtagagcagt tgggcttccg
     5701 gagcccctcg gcgttggtca ctgagggcta acacttccac ctctttttct tcattgcctt
     5761 ggcgaagttt gatgatggca ccgatctcca ccgctttgct aactttagct ctttgcccat
     5821 tataatggac tttaccccct tcaatcattg ctttggcaat cgaacgggtt ttataaaaac
     5881 gagccgccca aagccattta tctagccgaa cttcggcgtc gttttgttct ttttcgtgtt
     5941 tatttttcat tttctgcctt aaaatcaaaa caatagtcga aatattagag cgaaagtgag
     6001 atttttcaac taaaataact caaaaaggtg agataaaatg ataaaacaac ttcctgaaat
     6061 tttgaacatt aaaacagtag cgaaatctcg catttttgag gtgcaagcgg tcgatttacg
     6121 cttttctaat ggcgaagagc gaacttacga acgacttacg ccgaatcgcc gttcttcggt
     6181 aatggtgatt ccgattcaaa acaacgagct gatttttgtg aaagagtatg cggtcggctc
     6241 ggagcgttac gagctgggtt ttccgaaagg cattgtggat gcaggtgaag agccgattga
     6301 gagtgcgaac cgtgaattac aagaagaaat tggttttggg gcgaaaaaat tagattttct
     6361 gcggtcgctt tacagttcgc caagccatat gtacggctta atgcacctgt ttttggcaca
     6421 agatctgtac ccatcaaaat tggaaggcga tgagcctgaa ccgctggaaa ttgtgcgtta
     6481 tccgttggat aaaattgatc aattattggc agatcctgat tttgccgaag cacggaattt
     6541 gtccgctcta tttatgctac gagaatactt aaaaaaatag gcaaggagct attatgcaaa
     6601 cgctaactca acccctactc gagaatatta tcaatattgc caaagcagcc ggtgagcagt
     6661 taaagcagct ttatgcccgc tcggtggcaa ttaaaatcaa agccgattgc acaccggtga
     6721 cggaagcgga tctgattatc agccaatttt taactgaacg cttgaagcaa ctcacaccag
     6781 atattccggt attatcggaa gagttttgcg atattccgtt tgccgaacgc caacaatggc
     6841 aagaatattg gattatcgac ccgattgacg gcacacaaca gtttattaac cgcaccggtc
     6901 aattttcagt ggtgattgcg ttagtgcaaa aacgtgaggg tagaaatcag ccggtgctgg
     6961 gcgttattca tgctccgata ttaggaaaaa cctattttag tatggaaggt agcggtagct
     7021 ttttgcaaga aaatggagaa attcgaccgc ttgtcaaacc gaaacgtgcg gagaatgccc
     7081 ttttgattgt taccgtaggc agcgatttac atgcagaaca agctaaaaat gccatttcag
     7141 ccccacaaat tgagtgtgta aaatatggtt cgggcagtct aaaagccggt ttagtggcag
     7201 aagggaaagc cgattgttat atccgttttg gtgacaccgg cgaatgggat actgctgtgg
     7261 cagaagtgct gttaagtgaa atgggcggca aaattttcga ctttaatttt tcgccgctga
     7321 cttataatca gcgagaaagt ttgattaatc cttattttgt gatggtggct gacggctcga
     7381 tagattggga taaaatattt ttattcaaat aggtagttcc gattagcaat ttttatgata
     7441 atcttgcacc caacaaaatt ttaacaatta gcaataggat aaataaatga atgctgaaaa
     7501 tagctgtatc gtcatttttg gtgcttccgg tgacttaact tttcgtaaat taattcctgc
     7561 tctttataac ttatataaga ttggcagatt gggcgagcat ttttccgtcc taggtgtttc
     7621 tcgttcagaa ttaaccgacg aatctttccg ccaaaaaatg cgtgatgcgt tagtcaaatt
     7681 tgaaaaagca agcggtgaag aattagataa attttgcgaa catctttatt accaagctgt
     7741 aaatacctct gatgcagtgg attatgccaa gttgctgcct cgtcttgatg agctacacga
     7801 taaatatcaa acagccggta acacgcttta ttacctctcc acgccaccaa gtttatatgg
     7861 cgtgattccg gaatgtttag ccgctcacgg cttaactacc gaagagtttg gctggaaacg
     7921 gattattgtt gaaaaaccat tcggctacga tatcgaaacc gccaaaaaat tagacgtaca
     7981 aatccacaaa tgctttgaag agcatcaaat ctaccgtatc gaccactatt taggtaaaga
     8041 aacggtacaa aacttactcg ttttacgttt ttctaacggc ttatttgaac cgctttggaa
     8101 ccgtaatttt attgattatg tggaaattac cggggcagaa tccatcggcg ttgaagatcg
     8161 tggcggttac tatgatggct cgggggcaat gcgtgatatg ttccaaaacc acttattgca
     8221 agtattagcc atggttgcaa tggagccacc ggcaattatt aatgctaatt caatgcgtga
     8281 tgaagtcgca aaagtgctat attgcttgca tccgttaact gaagaagacg ttaaacacaa
     8341 tgtggtgtta ggtcagtatg ctcgtggcac ggtagacggc aaagaagtgc cggcttactt
     8401 ggaagaaaaa ggcgtgccgg ctgattccaa cactgaaacc tttatggcgg taaaatgtaa
     8461 aatcgataac tggcgttggg caggtgtgcc gttctatgtg cgaaccggta aacgcttacc
     8521 aacccgtgtg acggaaatcg taattcattt taaaactaca ccacacccgg tatttagcca
     8581 aaatgctccg gaaaataaat tgattattcg tgtgcaaccg gacgaaggca tttcaatgcg
     8641 tttcggcttg aaaaaaccgg gagcaggctt tgaagcgaaa gaagtctcaa tggatttccg
     8701 ctattctgat ttaagttcat catcaagctt actcaccgct tatgaacgct tactattaga
     8761 cgcacttaaa ggtgatgcaa ccttatttgc ccgtactgat gctgtacacg cttgttggaa
     8821 atttgtgcaa ccgattttag cctacaaagc taatcgtggg cgtgtgtatg aatatgaatc
     8881 cggcacttgg gggccaaccg aggcagataa attaatcgcc agacacggca aagtatggcg
     8941 aaaaccgtcc ggtacaatga agaagaaagt gtaaatttca gttcccctct ttagcaaaga
     9001 ggggctaggg gagatttggc agaagttata tacgctcata cgaaatattg aaatcgtaat
     9061 caaatctccc cctcccctct tttctaaaga ggggtgatct aacgaggcaa attatgaata
     9121 aagttatttt ccccaccgcc caagctgcgg ttgaacaaat tgctaaagag tttattgaat
     9181 acagccatca aaaccgcccg gtgcatattt ccctttccgg tggttcaacc cccaaattat
     9241 tattcaaaac cttagctcaa gcaccgttta ataccgaaat tcaatggcaa aacctgcatt
     9301 tctggtgggg ggatgatcga atggttgccc caaccgatcc cgaaagtaac tacggcgaag
     9361 tgcagaaatt actgttcgat cacatcgaca ttccaagcga aaatattcac cgcattcgtg
     9421 gtgaagagaa tgtagaacaa gaacttgcaa gattttcggc agaattgacc gcttgtgtgc
     9481 cgaacttggc gtttgattgg attattttag gaatgggaac agacgggcat accgcctcac
     9541 tgttcccaca tcaaacagat tttaatgatc agaacgttgc cgtgatcgcc aaatacccag
     9601 aaacagggca gatccgcatt tccaaaacgg catctttaat tgaaaaagcc aaacggatca
     9661 cttacttggt cacaggagca agcaaagcgg aaattttaaa agaaatccaa accactccgg
     9721 cagaaaattt accttatcct gccgccaaaa ttcaggcgga aaatggggta acggaatggt
     9781 atttggatag tgaggcggct aacttactct aggtcacaat cagtgacctt tacaagcggt
     9841 taaattttag aaaaatgttg caaagtattt ttgtgatatt catcgaaaaa gcagaaaaat
     9901 ctgctcgtgg tataggccaa aaattggcat agtctttctt attttgagat cacaaaagtg
     9961 atcttcactg aagaataagg aagaaagatg aatccaattc aattaattga accaaacatt
    10021 aactctaaaa tttttactat tcgtggcgag caagtaatgc tagatgttca tttggcagag
    10081 ctttatcagg tagatactcg aacctttaac caagcagtaa aacggaatga agagcgattt
    10141 cctgacatat ttcgttttca attaacagaa aacgaatggc tatctttaag atcacaattt
    10201 gtgatcttaa acgaaaatag tgggcgtggc caacatagga aatatcttcc ttatgtcttt
    10261 accgagcaag gcattgcaat gctttcggca gtattgcgta gtgaagttgc ggtgcaagtt
    10321 agcattaaga ttatgcaagc ctttgtgcaa atgcgtcatc ttttgcaaac aaatagtggt
    10381 ttggtacaac gcttagaaag tgtagagcgt aaacagttgg agatgtctgg gcagttagag
    10441 caggtgtttc aatctcttga aggcaataag cctaaaatgc aaggggtttt ctttgaaggt
    10501 gaaaccttta acgcttatca gtttgttacg gaattagtga gaggtgcaaa atcatcgctg
    10561 attttaattg ataactatgt agatgatacc gttttaactt tatttacgaa acgatcgcat
    10621 aacgtatcag ttacgattta tacgaaacaa atatctaagc aacttgcatt agatttggaa
    10681 aaatataaca gccaatatgc tcacattaat gtgaaaatat ttgataaatc tcacgagcga
    10741 tttttgatta ttgatgaaaa agagctttat catatcggtg catcacttaa agatttaggt
    10801 aagaaatggt tcgctttttc taaaatggat ttatcaatga gccgcatttt agaaaagtta
    10861 gcggaaaatc aataaggtat attaatgaaa acactcggca ttttaggtgg aatgagtgcg
    10921 gaaagcacgg tttcttatta tttagatatt aatcgctcgg tgaataaagt attaggtgga
    10981 aatagcagtg ccaagatttt aatttcgagt gtcaattttg aagagattgt acaatgccaa
    11041 aagcagggaa attggcaagc agccgctgaa attttatctg aacaagctag attgctagaa
    11101 caagccggag cagaaggcat tttattggca accaacacaa tgcacaaaat tgccgatcaa
    11161 attagtagcc atatctctgt gccgtttttg catattttgg actgtgtggc tgaggcgatt
    11221 tcagctcaag gtctgcagaa agtagcactc cttggcacaa aatttactat gagtgataat
    11281 ttttacaaag acggtttatt ggagcgtggt atcacatcaa tagtaccaga tgaggaaacg
    11341 caacaagaaa ttcatcgcat tattttcgag gaactctgtt taggcaagat tactgaaagt
    11401 gccaaagcgt tttatcttca gactattcaa caacttagtg aacaaggtgc agaaggtgtg
    11461 attttaggtt gtaccgaaat cgggttgctg attaaccaaa acgacaatcc gttaccgttt
    11521 ttcgatacag cagcattaca cagccaaatg gcggtggagt ttattttagg ttaataaatg
    11581 ttacaagcgg tcaaatttgc aaaaaatttt accaattcga ccgcttgcat agaatcaaaa
    11641 acaataggag caaacaatgt cacaaaaagg cgatatcggc gtgattggac tcgccgtaat
    11701 gggtcaaaat ttaattttga atatgaatga caacggcttt aaagtggtgg cgtacaaccg
    11761 cactacttca aaagtggatg agttcttaga aggtgcggcg aaaggcacga acattatcgg
    11821 tgcttactcg ttagaagatt tagcggcgaa gttggaaaaa ccgcgtaaag tgatgctaat
    11881 ggtgcgtgcc ggtgaggtgg tggatcagtt tatcgaggct cttctgccac atttagaaga
    11941 aggcgacatc atcattgatg gcggtaactc aaactatccg gacaccaacc gccgtgtgaa
    12001 agcgttagcg gaaaaaggca ttcgctttat cggctcaggt gtatcgggcg gcgaagaggg
    12061 tgctcgtcac gggccgtcaa ttatgccggg cggtgatgaa tctgcgtggc aatatgtgaa
    12121 gccgattttc caagcaattt cagccaaaac cgacaaaggt gagccttgtt gtgactgggt
    12181 tggtcgtgac ggagcagggc attttgtgaa aatggttcac aacggtatcg aatatggcga
    12241 tatgcagtta atttgtgaag cctaccaatt cttaaaagat ggtttaggtt taagctatga
    12301 tgaaatgcac gaaatcttta aagagtggaa aaacaccgaa ttagacagct atttggtgga
    12361 tattaccact gatattcttg cctacaaaga cgaagacggc gagccattgg tagagaaaat
    12421 tctcgacacc gcaggtcaaa aaggaacggg taaatggact ggtattaacg cccttgattt
    12481 cggcattcca ttaacactga ttaccgagtc ggtattcgcc cgttgcgtat ctgcgtttaa
    12541 agatcaacgt gttgcggctt caagattgtt taacaaagaa attggtaaag ttgaaggcga
    12601 caaaaaagta tgggtagaag cggtacgccg tgcgttactt gcttccaaaa tcatctctta
    12661 tgcacaaggc tttatgttga ttcgtgaggc ttctgagcaa ttcggttggg acatcaacta
    12721 cggcaatacc gccctattat ggcgtgaagg ttgtattatc cgcagccgtt tcttaggcaa
    12781 cattcgtgat gcgtatgaag ccaacccata tttagtgttc ttaggctcag acccatactt
    12841 caaagatatt ttggaaaact gcttggcaga ttggcgtaaa gtagtggcaa aatcggtgga
    12901 aatcggttta cctgtacctt gtatggcgtc agccattacc ttcttagatg gctacacctc
    12961 ggcacgttta ccggcaaact tactccaagc acaacgtgac tactttggtg ctcatactta
    13021 tgagcgtaca gacaaagctc gcggtgagtt cttccacacc aactggacag gacgtggcgg
    13081 taataccgca tcgaccactt atgatgtgta attaatcttt ttgagccact taattcgata
    13141 ttaagtggct tttttattgg atttttcttc aaaatatctt ggagtgaatg tttacaagtt
    13201 tgtataataa tggagcgatt tttcatttat atttaaggag aacctatgct taccgatcaa
    13261 gatattttta atcgctacca aacaaaaaaa tcagaatttg aaaaacaggc agatatttcc
    13321 cttattgggc attccctgtt tgatatgtgg ggcgatatgg aaaacggcac gccgaattta
    13381 gcaggaaaaa cagttgccaa tttgggctta tcaggcacca gcacccgcca atatttggat
    13441 gtgattaccc gacaagagcg aattcaacac gttggcgata atgtatttat ttttctaggc
    13501 gttaatgaca ttgtaaaaga gccggattac tcgccaaaac aagtgttaga gtggattggc
    13561 gaaattgtgg attctcttcg caaaattaat ccaaatgcca acttttttct attggaagcc
    13621 acaccggtta ataatattac caccaccaat aatgctgcaa taaaagagct caatgcgtat
    13681 tttgaggcaa atattccatc tgatttgact tatgtaaaaa cgtgggaata ttttgctgac
    13741 aaagaaggga atttagatct aactttatgc cacgatggat tacacttcac ccaagcaggc
    13801 tatgaccgcc tagaggcgat tttaaccaaa catttataat gaaaagcttc aataagcaag
    13861 cggtctgaat tagcaaaaaa tttccaaatc ctgaccgctt gttagttaat tacagtgctt
    13921 caatctcttg atactgcacc tgcaatttct ctaatccact caggtactct tgcatttttt
    13981 cacgctcttt ggcgatgact tgctctgggg ctttggcgac aaaggcttcg tttgaaagtt
    14041 tgccttcaat gcgagccact tcacctttaa gtttatccat ctctttggtg aggcgagcta
    14101 gctcagcttc tttgttgata aagcctgcca ttgggatcaa gatctcacca tttgcgacca
    14161 gtttcgctac cgatagcggt gcattttcac cattttccag cactttcacg ctatcaagtt
    14221 ttgccatcga tttgagcaac acttcgttag cgttgagaat agagacttcg tccgcagaga
    14281 aattacgagc gattaaatct aaacctttgc ttggtgcgat gttgctttcc gcacgaatgt
    14341 tacgcaccgc cacaatcact tctttgataa agttgatttg actttcggcg gtttcatcaa
    14401 tggcaagcgg gtcaaattgt gggaattttt gcaacataat ggtatcggct tcaataccta
    14461 caaagccttt cactttctgc cagatttctt cggtgatgaa cggcattact gggtggatta
    14521 aacgcaggag tttttccaat acattcacca gcgtgcgact tgcgccacgg cgttgtacat
    14581 ctgtgccttt gaagaaaata ggtttggtca gctctaaata ccagtcgcag aattgatccc
    14641 aagtaaattc gtagatcgca tttgccacta agtcgaaacg gtattggctg agtgcggtgc
    14701 ggaaagtttc caccgtgcgg ttgaattggc tttcaatcca acgatcggca aggctaaatt
    14761 ccacgtcgcc ttcgcttaaa tccaacttgt cattggtcag cacataacgg ctcgcattcc
    14821 acagtttgtt gcagaagttg cggtagcctt ctaaacgttt catatcccag ttgatgtctc
    14881 gaccgttgct ggcaagggcg gtgagggtga aacgcagagc gtctgtgccg tgtgccacaa
    14941 tcccttcggc aaattctttg cgggttgcct tagcgatttt ttctgccagt tgtggctgca
    15001 tcatattacc tgtacgtttt tcgagcaaat cgtcgagact gatgccgtca atcatatcaa
    15061 tcgggtctaa cacgttccct ttcgatttcg acattttctg cccttgctcg tcacggatca
    15121 agcctgttac atacacggtt ttgaacggca cttgcggttt gccgttttca tctttgatga
    15181 agtgcatcgt gaacataatc atacgagcca cccagaagaa gatgatgtca aaaccggtaa
    15241 tcagcacatc ggtcgggtgg aacattttca gttctttggt ttgttctggc cagcctaacg
    15301 ttgagaacgt ccatagacca gacgagaacc aagtatccag tacgtcttca tcttgcttta
    15361 atggtaagtc cgcaggtaag ttgtgtttcg cacgcacttc cgcttcatct cgtgctacat
    15421 aaacattgcc ctgctcgtca taccacgctg gaatgcggtg tccccaccat aattggcgag
    15481 agatacacca gtcttgaata tcacgcatcc aagagaaata caggttttcg tactgtttcg
    15541 gcacgaattg gatttcgccg tcttccaccg ctttggtcgc gacttccgcc aaaggtttga
    15601 cagacacata ccattggtcg gtcagcatcg gctcaatcgg cacgccacca cggtcgccat
    15661 acggcacttt taagtcgtgt ggtttgattt gatctaacag cccaagagct tcaaaatctg
    15721 ccacaatttt cttacgcgcg gcaaaacgct ctaagccttg atagtcggca ggaattgggg
    15781 cggtgtagtc ggaaagcggt ttaccgtctg tgccgataat ttcggcctct gcacgaatat
    15841 cggcatttaa ggtcatcaca ttcaccatcg gcaagccgtg gcgtttgccc acttcgtagt
    15901 cgttgaaatc gtgggcaggg gtgattttta ccacgcccgt accgaactca cgatccacat
    15961 actcatcggc aataatcggg atttcacggt tggcaagcgg taggattacg cttttgccaa
    16021 tcagagcttg ataacgctca tcttcagggt gaaccgccac cgcagtatcg cccaacatcg
    16081 tttcaggacg ggtcgttgcc accactaagt aatccaagcc gtctgcggtt tttgcaccat
    16141 tagccagcgg atagcggaaa tgccacagcg agcctttgct ttctttgttt tccacttcca
    16201 agtcagaaat cgcagtatgc agtttcggat cccagtttac gaggcgtttg ccacggtaaa
    16261 tcaagccttc ttcgtgcaag cgaacgaaca cctcttttac cgcattggat aagccttcgt
    16321 ccatcgtaaa acgctcacga tcccagtcaa tcgagttgcc taagcgacgc atttgctggc
    16381 tgatcgtgcc gcccgaatag gctttccaat cccagatttt gttgataaag gcttcacgcc
    16441 cataatcgtg gcgggtttta ccttcttccg ctgcgatttt acgctccacc accatctgag
    16501 tggcaatccc tgcgtggtca gttcctgttt gccaaagggt attgttgccc tccatacggt
    16561 taaaacgaat cagcgtatcc atcaaggttt gctggaaagc gtgccccata tgcaaactcc
    16621 ccgtcacatt cggcggcgga atagcgatac agtagctcgg tgcattaata tcttcactcg
    16681 gcttaaaata gccttgcgat tcccagtgtt ggtagagcgc ttgctctaca gcggaagggt
    16741 taaaacggtc ttccattgtg aattgttttg tcattggttt tgttttctct tgtttaataa
    16801 ttttttcact agcttaatct tataaaaaag atctttgccg taaatgcttt tataggtaat
    16861 tagttattta aattaaggtc aactaaaaga ttaattggga attttttgtt cctcttgcat
    16921 ttttcttcgt ttttcccata attgctttcg gctatttaaa cagctttgct caatctcttt
    16981 aatatcatct tctatattgg atgaaaaatt gattaatttg attgtcggag gaaatatacc
    17041 ggttttatct tcttgcgtag ttaatgttag tgttcctaga ttactgttaa tttctttaat
    17101 tttaaatgtt gatagctcgg tatatccccc actaacaaga taactcaatt tcaactctct
    17161 atcgaaaata agatttaata atgttggctt agggctttcc aatctaaaac tccaagttag
    17221 aggtattaac tcacacagag ctgttgaagt catttcccct aaaatcgaat tgtcatcttt
    17281 attaaccata aattcaatga taacatttgg ttgctcttca ggtatgttca ataatttata
    17341 gtcgataatg taatttgtat ttgtagacca taaaccatcc agttttttat tatataggta
    17401 attctcctcg aaatttttcc aaataatagg catgtttgcg atgcgttcta aaatatcagt
    17461 tgtgaagata ctccatatgg cagatataag aataatagga attttgttat tttttatgaa
    17521 ctgttttaag ccattctctt ttttatgagt accaataact tttttagact ttttcctatt
    17581 ctgtttcatc tttgtgtttt tgttccaata tccccgatgg tgatcgtctt cgacgagagc
    17641 ttatttattt aagaacctat cagagatagg cataagcggt ctgtttcgag aagttttttg
    17701 caaagttttt ctttaatccg acagcttgtc acccacacac aagccgtgtg gggttacgca
    17761 tagctgagcc actttgtggc tctaagttac agctccaaag gagctgggat tgtcgagcct
    17821 agcacggctc gtgctaggtg gttttaaacc ctaattccac taattcatca caaagctgat
    17881 tacaccaatt cggtattttg tctgaaattt ttatcacttt cttatcagca atctgcaaaa
    17941 tcaaattcgg cttggtttct gaattatcat aaatcagtgt ttcatcattg ataaaaatcg
    18001 cttcaattaa attttcacgg ctaatgtgat agcgttttct aatggtttct tcatcaataa
    18061 aatgtccgcc ggctttcact cttgctttta cccgtgcgat gttaatttta tagctatcga
    18121 caccaatata atttaatcga gttttgaaat atcctgcttt ggcattttcc attcgtttta
    18181 gaatagattt acccgagagg gttgattcca ttgaaaatgc aacctgattt tttactgcaa
    18241 actgaaatag ttcgattgct tttctgcccg cctcaatatc ggccaatctt ggattgagtg
    18301 ggttaatctg catcgcaata ttatcggaat caatcacaat ctcgacttta tcttgattga
    18361 aagaacgtaa agtagatttg ccggctccgt ttgtgccaca gtaaaaaatt gctaggttat
    18421 tgtgcatatt caatcacttt ttccgtaccg tccggataat gctgaattaa atccccattt
    18481 tctcggcgat acgtcagcac ttcgtgcttt ttcttttctt caaaccatgc tgtaaagaga
    18541 atatccagtt cacgttgttt tttcagtaat tcttcacgac ttgtcatttt atgtcctctg
    18601 tttcagaatc gccaaatacc tttccaactc agctaattca tactgactaa tcaattcaac
    18661 caaactacta atatcttgtt gatttttatg gaaatcatca aaacattggt aatattgggc
    18721 tcgattggta aatttaatat caatcggtaa atagccctgt tttaataatt caaaattaat
    18781 cagtaatcgc cctgtgagcc cgtttccatc aataaaaggg tgaatgcttt caaaggctaa
    18841 atgcagccaa ctgattgcct ctatgggatg aagtgcggtc agtttttgtt gatatttttc
    18901 aatcaataat tgcatttctt cggcaattaa ataagggggg gggcattttc tgcccctaaa
    18961 attcgtactg gaattttgcg ataaacccct cggctttccg cattgcccat taataccaga
    19021 gaatgaatat ctttaatcgc tcgttcgctt aatggttctt tattggcgac taattcataa
    19081 atatagttga atgcatcctt aaaaccgata atatctaaat gctcccgaat cggtttttcg
    19141 gcaatggtca ttccctcttt taaaatgagc accgtttcac gcaaagtaat ggtattgcct
    19201 tcaattgcat tggaattata gctgctttca ataataaact cttcccgcag tcgttgaact
    19261 tcgctttcag ataatggacg gcgttgtgaa agtgctgttt ttaattgttc gattttagct
    19321 aatttattca ttctaacacc atatccaaat gcgcaatccc atcttccaaa tacacttctg
    19381 aaaccgcttt aaacccaaaa ctttcataaa acccttgcag gtaactttgg gcttgggcgt
    19441 gaatgggttg agcaggaaaa tgttcgccac aataatccat cgctttttgt accaattccc
    19501 ttgctaagcc tgagccacga ttttctttca ccaccaacac tctacctata tgcacaccat
    19561 cattggctgg aattaaacgg cagtaagcgg tcagattttt tgcatttttt gtaaagaaat
    19621 gcaccgcttg caggtcttta ttatcgactt cttggtaagg gcagttttgc tcaaccacaa
    19681 acaccgctgt acgtgcgtgg taaatctcaa acaactcttg ggtggagagt tcatcaaagc
    19741 gttttgcgcg ccaagagagg ttttttagca ttgtatcgtt tccagttgcc aaccaagttg
    19801 gcggtattgt ttatagcggt cacgagcctg tgctttggcg gtttcttcca ccggcacgaa
    19861 atcaataatc tgggtaaaac tgccgataaa ttcggggagt tgggtttgga gtgaaatcaa
    19921 caaatcccga cgttgagcat tgcgtttacc tttccacgaa atttcgatag gcgttgggta
    19981 agtggtgatt tctcccgata aattgtgcgg cacgaacgaa tccggatctc ttgcccaaag
    20041 tgcttcgtca atatttaacg cttgttgctc ggtttcgcat gcaatcagta cccgtttacc
    20101 taatcgccac gcttgagccg caagttcgca ggcttgcatt tcagcagcgg aaagctcggc
    20161 tgcatcggct tggcttaata gataaaattg tacttgtttc acagaatgtt cccagaaatt
    20221 caatcagata tttaaactta atattctagc tgaaaatgag taaaatataa aatctaagcg
    20281 tttgtttttg caaaaaattg agaaaaaatg accacttgtg ttgcgttgcc ttgaggaact
    20341 aattagcttt tagacgttct aagagaacaa tgcactattt caatagttgg aaattgtgta
    20401 gaatacccac ttcatttagc tattttataa ggaacttact atgggcttat ttgattttgt
    20461 tggcgacatt ggtcgtaaat tatttaataa agaagaagat gcttcaaaag cggttacaga
    20521 gcatttggcg gaagacaatc cgggcgttga aaatgtaaac gtaacggttg aaaacggggt
    20581 agcgaaaatt tcaggcattg cttcaaccgc agcagctgtt gagaaagcgg tattgatggc
    20641 gggtaatgtg gctggtatca ctgaggtaaa tattgatgaa gtgaccttgc ctgatgacgt
    20701 gcaacttgca agtgatgatg agctttatgt tatccaaaaa ggggatacgt tgtgggaaat
    20761 cgccacaaaa gcttatggta acggtgcaaa atataaagcg attgtagaag caaataaaga
    20821 agttattaaa gacgaaaata aaatcttccc agggcaaaaa attcgtatcc cgaaaggttt
    20881 ataatcaaat tgaaagagct aagctggtcg aaagtttagc tctttttgta ggtggtgtta
    20941 gactgaaaat ggatattgaa tggcagggtg gtattcataa ccttcaactt tgaaatcatc
    21001 taagctcacc caagtttcta aatcttctaa ggattttata tcaggattaa tgattaattt
    21061 aggtgcattg agtggttctc gcttaagttg aacatcacgc attaattcta gttgatcttc
    21121 ataaatatgc gcattgacaa ttttatggaa cgcttgtcct gccttatgcc ctgtaatttg
    21181 agccattaaa gctaaaaagg tatagcattg aatcatattc caatttaacc caagcggtac
    21241 atctgccgaa cgctgagtac tattcaggta aagcgtgcca tcaagtagag aaaaatgatg
    21301 gctgtgtaaa caaggacgta agcagcccat atggaaagcg ccggggtggt agaaggtata
    21361 aatttcacca cggttatcaa ttcctttttt caaatcgtcc acaatttgtc gcaataaatc
    21421 gactgagcca ccgtctggtt tcgggaaatt acgccctact gcgccgtaaa ccaagcccat
    21481 atcatcttcc ccttttcgat agggattagc aagccattgt gcattttcat ttgcattagc
    21541 gtcccacgat tttgtgccta attgacggaa atcagcagca ttactatagc ctcgaatata
    21601 gcctaaaagt tcggcaatcg cagctttcca ataactacgg cgagtggtaa ctaaaggaaa
    21661 ttctcctttt tctacgtcat aagttaagtc agcattaatg actgtgaggc agtgtttgcc
    21721 tgtacgttca tttgcaaccc atttgccttc gctaacgatg cggttacata agtctaaata
    21781 ctgtttcatt atttacctca taaaaaattt taggtaattt tgccatttat tcggtaaaat
    21841 agctaaaact ttatgacaca acacaataag gagttatgga tatgaaaggt ataatgaaat
    21901 ccattctggt tttttccacc gctgtttttt tagcagcttg ttcatcgaat aaaagcggtt
    21961 ggacacgttt aaatgataat gatgttgatc agaaatctta tgctattgct tatggtgcaa
    22021 cggctcagac ttatgcggat agagtaaatg aaagctatga tatcaattcc tttatgaatg
    22081 gggtaaatga ttggtacact aaaaaggtta cattgccaat tgagcaaatt agagcaataa
    22141 cgattaatcg aatgttagac cataatgtgt atgcttatta tagtggtgtg atttatgccg
    22201 cagatttgca ggcaaatttc aatcatttag atcctaattg ttgggggctt gttcaaccag
    22261 cgagtatgac ccagggcatt cacgatgcga tgttagattt acagaagaac aaagttcgtg
    22321 gagatgagta tatcaaaaat ggggttgagc aaatattgca cctttgtgta aaaacgattg
    22381 ctgaagatga aaatgaatcg caatctaaag gtaaaaccaa aaagcataaa taagttaagc
    22441 tatgacaagc ggtaaaattt ttaaaaaatt ttaccgcttt tttataaccg tatgaaatgt
    22501 ttaatattta ttctatgaaa cttaaaaaaa cagcgttttg tttattcaat aggcaaacac
    22561 tcgggatttt tcaattttca ggaaaaagaa tttgacatct ttttaaattc tagtaatatg
    22621 gcgcccacag acacagtgag tggtgagatg gccgagcagg ctgaaggcgc tcccctgcta
    22681 agggagtata gggttaaaaa gctctatcga gggttcgaat ccctctctca ccgccattta
    22741 ctttatcacg cacccgtagc tcagctggat agagtactcg gctacgaacc gagcggtcag
    22801 aggttcgaat cctctcgggt gcgccatttt aatttttact ctattcaaat taaaatggtt
    22861 gctgataaaa ttaaataaac ttacaattca aata
//
LOCUS       DANLXK010000023        22772 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.023, whole genome shotgun sequence.
ACCESSION   DANLXK010000023 DANLXK010000000
VERSION     DANLXK010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22772
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            84..1190
                     /gene="mltA"
                     /locus_tag="PXD88_000780"
     CDS             84..1190
                     /gene="mltA"
                     /locus_tag="PXD88_000780"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL6280378.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            1203..1652
                     /locus_tag="PXD88_000781"
     CDS             1203..1652
                     /locus_tag="PXD88_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280379.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(1686..3203)
                     /gene="purF"
                     /locus_tag="PXD88_000782"
     CDS             complement(1686..3203)
                     /gene="purF"
                     /locus_tag="PXD88_000782"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL6280380.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(3218..3721)
                     /locus_tag="PXD88_000783"
     CDS             complement(3218..3721)
                     /locus_tag="PXD88_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL6280381.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(3867..4328)
                     /gene="rnhA"
                     /locus_tag="PXD88_000784"
     CDS             complement(3867..4328)
                     /gene="rnhA"
                     /locus_tag="PXD88_000784"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL6280382.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(4421..5752)
                     /gene="argG"
                     /locus_tag="PXD88_000785"
     CDS             complement(4421..5752)
                     /gene="argG"
                     /locus_tag="PXD88_000785"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL6280383.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            5936..6976
                     /locus_tag="PXD88_000786"
     CDS             5936..6976
                     /locus_tag="PXD88_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6280384.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(7041..7799)
                     /locus_tag="PXD88_000787"
     CDS             complement(7041..7799)
                     /locus_tag="PXD88_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL6280385.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            7926..8240
                     /gene="yhbY"
                     /locus_tag="PXD88_000788"
     CDS             7926..8240
                     /gene="yhbY"
                     /locus_tag="PXD88_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL6280386.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            8301..9023
                     /locus_tag="PXD88_000789"
     CDS             8301..9023
                     /locus_tag="PXD88_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL6280387.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            9092..9253
                     /locus_tag="PXD88_000790"
     CDS             9092..9253
                     /locus_tag="PXD88_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280388.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            9261..9623
                     /locus_tag="PXD88_000791"
     CDS             9261..9623
                     /locus_tag="PXD88_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280389.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            9636..10553
                     /gene="nagK"
                     /locus_tag="PXD88_000792"
     CDS             9636..10553
                     /gene="nagK"
                     /locus_tag="PXD88_000792"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL6280390.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(10624..12573)
                     /locus_tag="PXD88_000793"
     CDS             complement(10624..12573)
                     /locus_tag="PXD88_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL6280391.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(12606..13394)
                     /locus_tag="PXD88_000794"
     CDS             complement(12606..13394)
                     /locus_tag="PXD88_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL6280392.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            13519..13749
                     /gene="xseB"
                     /locus_tag="PXD88_000795"
     CDS             13519..13749
                     /gene="xseB"
                     /locus_tag="PXD88_000795"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL6280393.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            13755..14648
                     /gene="ispA"
                     /locus_tag="PXD88_000796"
     CDS             13755..14648
                     /gene="ispA"
                     /locus_tag="PXD88_000796"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL6280394.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(14683..15483)
                     /locus_tag="PXD88_000797"
     CDS             complement(14683..15483)
                     /locus_tag="PXD88_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL6280395.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(15608..16393)
                     /gene="znuB"
                     /locus_tag="PXD88_000798"
     CDS             complement(15608..16393)
                     /gene="znuB"
                     /locus_tag="PXD88_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL6280396.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(16480..17817)
                     /locus_tag="PXD88_000799"
     CDS             complement(16480..17817)
                     /locus_tag="PXD88_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL6280397.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(17827..18315)
                     /gene="mreD"
                     /locus_tag="PXD88_000800"
     CDS             complement(17827..18315)
                     /gene="mreD"
                     /locus_tag="PXD88_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL6280398.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(18315..19370)
                     /gene="mreC"
                     /locus_tag="PXD88_000801"
     CDS             complement(18315..19370)
                     /gene="mreC"
                     /locus_tag="PXD88_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL6280399.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(19472..20524)
                     /locus_tag="PXD88_000802"
     CDS             complement(19472..20524)
                     /locus_tag="PXD88_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL6280400.1"
                     /translation="MFKKFLGLFSNDLSIDLGTANTLVYVKGQGIVLDEPSVVAVRQD
                     RMGSLKSIAAVGSHAKLMLGRTPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNN
                     FMRPSPRVLVCVPAGATQVERRAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMG
                     SMVIDIGGGTTEVAVLSLNGIVYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERI
                     KQEIASAKIESDDDVKTMEVHGHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSV
                     LEQCPPELAADIFERGMVLTGGGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKA
                     LEMIDMHGGDVFSIDD"
     gene            complement(20639..21268)
                     /locus_tag="PXD88_000803"
     CDS             complement(20639..21268)
                     /locus_tag="PXD88_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL6280401.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            21372..22019
                     /gene="udk"
                     /locus_tag="PXD88_000804"
     CDS             21372..22019
                     /gene="udk"
                     /locus_tag="PXD88_000804"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL6280402.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            22034..22615
                     /gene="dcd"
                     /locus_tag="PXD88_000805"
     CDS             22034..22615
                     /gene="dcd"
                     /locus_tag="PXD88_000805"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL6280403.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            22693..>22772
                     /locus_tag="PXD88_000806"
     CDS             22693..>22772
                     /locus_tag="PXD88_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004153593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL6280404.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSA"
BASE COUNT         7061 a         4883 c         4256 g         6572 t
ORIGIN      
        1 ttatattctg gttttatttt gtcgctgttt ttgctattct tctgtttatt tttcacattt
       61 tattaacgat ataaggatat tcgatgaatt ggaaagcata taaaaaagct attgcggcag
      121 ctagcgtggt agcgattgca acggtattag tggcgtgttc gtcttcaggc caaaaaggca
      181 aaacaacctc ttatgatgcg gaaaaagcta aatttggagc aaaatataat ggtcgtcact
      241 ttatgcctta tggcacacat tttcaagctg gacgtttagg attaaatgct gctcctgtta
      301 atcaactaga ctttttacag cagctttcta atgtcagagc ctatagtagc ttggcagatt
      361 cttatgctat cgcttacgga aaaatcagtc gttggatctc atcgggcggt aatattaatg
      421 atttagcaaa atatggtatt agtactcgtt taatgcgtgg cgaagatggc taccagaatg
      481 tgttaatgac agggtattac tcgccggtta tcaaagcccg tagaacgcct caggggcaat
      541 accaacaccc gatttatgcg atgccgtcta gcaaacgttt ttcacgggcg gaaatttacg
      601 caggagcatt gcaaggtcag ggcttagaac tggcttatag taattcaatg ctcgataact
      661 tcttattagg tgttcaaggt agcggttacg ttgactttgg tgatggtcgc ttaaactatt
      721 ttgcttatgc agggcaaaat ggctttaaat atgccagcgt tgggcgttta ttagtagaag
      781 atggcgaaat tccgaaagag aaaatgtcag tgcaggctat ccgtgaatgg gggcaacgta
      841 accctagccg tgttcaaggt ttgttggagc gtaatccatc gtatgttttc tttaaaaacg
      901 atcctaccgg tcaggtaaaa ggctctgccg gtgtgccgtt agtaccactt gcatctgttg
      961 catcagatcg tagcattgtg ccatcaggta gcgtgttgtt ggtcgaaatg ccgttgattg
     1021 atagcaaagg aaattggacc ggcaaacacg aaatgcgttt aatggtggct cttgatgttg
     1081 gcggtgcagt gaaaggccat cacttcgatt tatatcaagg gattggcgat aaagcaggcc
     1141 atatcgcagg tttaatgaaa cattacggcc gtgtttgggt attaaattaa tacagggtaa
     1201 ctatgttaaa aaaactatct gccatattct tacttctacc gagcgccgtg cttgcaaata
     1261 atttgcaaaa tataaccgct tcaactgagc ctaaatataa aatctcagaa atagatgtca
     1321 gaattttgat acgccagctc aataatattg agcaatgtat ctatcctgag ttagctaaac
     1381 ccggttacca gcaaatctac gcaaattgga atctggctga aaatttaacg atgcaatatt
     1441 ttgaatatca gcttctaaaa gagttgctcg gagaggaaaa tcagaaactg atgcaaaatg
     1501 atacgctttc taccgagtat ttccatttac tgcattctcg tttaaatcac caaaaagcaa
     1561 atgtagatcc cgaaaaatgc gatacattta aacctagata taaagagatt tataaaagta
     1621 tggaaaatgc actcactaag aaaaatcaat agtaaaaaac tcgcagtttt cactgcgagt
     1681 ttcttttatc tttcgttatg aatttctaaa ttggtggctt gttttgccgc ctctgctttt
     1741 gctttatcgt ttcgagatct tgctatactg tctaaatagc atttatctac atcacctgta
     1801 atatattctc ctgtaaatac agagtcatca aagcgatgaa tagtcggatt ttccagttga
     1861 atagacttat aaagtgcttc aaggtcttgg aaaatcaatt tatccacccc tatcatctgt
     1921 gcaacctctt ccactgagcg atcataagcc actaattctt cacaagtcgg catatcaatg
     1981 ccatacacat tcgggtagcg aatttccggt gcggcagagg caaaataaac ccgttttgca
     2041 ccagctgctc gtgccatttc cacgatttgt tcagacgttg tacctcgtac aatagaatca
     2101 tcaaccagta acacgctttt gcctttaaat tcagaggcaa tcgcatttaa tttacggcga
     2161 accgagcttt tacgctgtgc ttgccccggc ataataaaag ttcgagctac atagcggttt
     2221 ttaacaaacc cttgacgata gggtttatac aacatattag caatacgtac cgcaatatca
     2281 tttgaggttt caggaatcgg gatcaccaca tcaatatcat cgataattcg tccccattca
     2341 cgtttaattt tctcacctaa taattcgccc atatgcactc gtgcagaata tacagaaacg
     2401 ccatcaatga cggaatcagg acgggcaaaa taaacatatt caaaaataca aggattcagt
     2461 tttggattat cggcacaaat ttgcgaatgt aattgcccat caaaggtaac ataaatcgct
     2521 tcacccggca gcacatctcg cacaaattca aaccccacta catcaagagc cacactttcc
     2581 gaagcaaaca tatattcggt tttaccctcg atttcacgtt tacccagcac taacgggcga
     2641 ataccgaatg ggtcacggaa agcaaccata ccgtgtccga taatcatcgc aatgcaagca
     2701 taagcaccac gaatgctatc attggtttta cgaaccgttt caaagatatt gtctgggctt
     2761 aaatgctgag tggaatagag atctaaaaag taagcaaaaa tattaagaag ggattcagaa
     2821 tcagaattag tgttcacatg gcggcgggct tcgttgtata agcgagcttt aagttccgca
     2881 ttattagtta aattaccgtt gtgaactaag gtaataccga aaggtgaatt gacataaaat
     2941 ggctgggctt cagacacact tgagctacct gctgttgggt agcgaacgtg accaattcca
     3001 acattgcctt gtaatctcac catatgctct tgctggaaaa catcgctgac taagccgtta
     3061 gctttgcgta agcggaaacg attttcatcg tctatggtga cgatacctgc ggcatcttgt
     3121 cctcggtgtt gaagtaatgt taaaccatca taaatcgcct gattcaccgg cgaattccca
     3181 ataataccga caatgccgca catatagaaa aacctcttta tttagtcgtg tttaaaaaac
     3241 tggaatttgc ttgtaactgt tcaaagaacc acttcacaat aaagtcaaaa tgcggaatta
     3301 atagcgatga tttccataat tccgtttggc ttgcttgggt aaaggtatct aagaaaaata
     3361 aaatagccga cacaattaaa ataccacgca atgccccaaa agcaccgcct aaaatacggt
     3421 cggtgataga cattccgctc aaatcaatca ctttgcctaa taaaccgttg atcacaccac
     3481 aaacaattaa agtcaaaatg aacagaatcg ccgctgcaat accattgcgt aaaaattctg
     3541 aattttgcaa ataaaccgaa ttaatttgtg tgagataacc gcttaaataa ggataaaacg
     3601 agcttgccac aaaaaaggcg attacccaac caagtagcga taatgcttca ttggtaaaac
     3661 ctcgccataa actgataagc actgaaaaag caatgattcc gataacaatt aaatcaacca
     3721 taacacacct taaagcgtaa agctctccta ttctacaaaa aaagaaaacg tttgcgtagc
     3781 actatttcgc taaaaataag tgctttatgc aaatacaagc ggttaaattc ggtaaaaaat
     3841 ttacacaatc cgaccgcttg taaaacctag tctgcaatat aaccaacatc gtccaacgtt
     3901 ggattatttg ctccttgttt agccagctca tcgcaaatct cattttcacg atgtcctgaa
     3961 tgccctttca cccaactcca ttcaatttgg tggcgttgaa tttcttggtc taaagcaacc
     4021 cataaatctt tatttttaac tggcttttta tcgctggttt tccagtcatt tttcttccag
     4081 ttaaaaatcc atttttggat cccgtttttc atatattggc tgtcactatt gagttgcacc
     4141 ttacaaggct cttttagcat tgctaaagcc tcaatcaccg cccgcaattc cattcggtta
     4201 ttggtggttt gaaaatagcc tttgctcacg gttttttcgt acccgttata acgcagcaaa
     4261 ataccaatcc cccctttgcc ggggttgcct aaacaagaac cgtctgtaaa aatttcaact
     4321 aatttcatca tcacgctttg aaaataaaag ccccaaagca ttaactttgg ggcagctttt
     4381 aggctaaatt ctaaaagtta tcagaatgga gatcaactga ttattttttt ccaagttgtg
     4441 gaatcacgct attattagcc gccaataaac ctgcatcggt ataaactgct aatttaccac
     4501 gggtatcgac aatatctaag ttacgcattg ttaattgacc gatacgatct gccggcgtaa
     4561 acggtgcatc ttctactttt tccatactta aacgttctgc ttcgtaggtt aagtttggcg
     4621 attcagtgtt aagaatagtg aaatcgttac cacggcgtaa ctcaagcgtg accgtaccgg
     4681 taatcgcttt tgccacccaa cgttgagccg tttcacgcaa cattaaagct tgcgggtcaa
     4741 accagcggcc ttgatacaat aaacgcccta aacgtaatcc gttaatgcga tattgctcaa
     4801 tcgtatcttc gttgtgaata ccggtaacta aacgctcgta agcgatgtgt aataatgcca
     4861 ttcccggtgc ttcataaata ccacgagatt tcgcttcgat aatacggttt tcgatttggt
     4921 ctgacattcc caaaccatgt ctgccaccaa tgcggttagc ctccataatt aattcaacgg
     4981 catcatcaat acgtttaccg tttaacgcca ccggcacacc ttcttcaaag gtaacagaaa
     5041 cagtttccgc tttaatttca actgattcgt cccagaatgc cacgcccata atcggtttta
     5101 cgatcttcat accggtgctt aattcttcta aatctttcgc ttcgtgggtt gcacctaaca
     5161 tattcgagtc tgtagagtag gctttttcca ccgacatttt atagtcaaaa ccgttttcga
     5221 ttaagaattt agacatttcc aagcgaccgc ctaattcatc aatgaatagt tggtctaacc
     5281 acggcttata aatttttaat tttggattgg ttaataaacc gtaacgatag aaacgctcaa
     5341 tatcgttacc tttaaaggtt gaaccatcgc cccagatatt cacatcatct tctttcattg
     5401 ccgcaaccaa cattgtgccg gttaccgcac gaccaagtgg cgtggtgttg aaatacggaa
     5461 taccgccggt tgaaatatgg aaagcaccgc attgaattgc ggcaatgcct tcgtgagcta
     5521 actgttggcg acagtcgatt aatcgtgcat tttcagcccc atattccatc gcttttttcg
     5581 gaattgcgtt gtaatcatct tcatccggct gacctaaatt tgcggtgtac gcataaggca
     5641 ctgccccttt tttacgcatc cataacagtg ctgctgaggt atctaaaccg cctgaaaagg
     5701 cgatacccac tttctgccct aaaggtaaag cttctaaaat tgttgctgac atacgaattc
     5761 ctataaattt tgaaagtaaa aatattcaaa cgcaaacgct tacgttcaag caaaatattc
     5821 tagctgaaaa gtagtaaaaa ttcatctaaa atttagcccg atgatttgca aattttttgt
     5881 gaaatttgac cgcttataat ttactgaaaa cctaaaagca atagagaaaa tcagaatgaa
     5941 aaaactactc gtaatccgta atgataaaat tggggacttt atggtctgct ttccggcatt
     6001 tgctatgttg aagcaatcaa tgccgaatgt ggaaattacc gctcttgtgc caagttatac
     6061 tgctccactt gccgagcttt gcccttctat tgataagatt attattgata cggcgaataa
     6121 aaaagataaa aatgaattta accgtatttt acaagcggtt aaaaatgagc aatttgatgc
     6181 ggttatttgt tttgtttcag actggcataa tgccaaactc acctggcaaa gtgggattaa
     6241 ataccgcctc gctccagcaa ctaaattatt ccaattttta tataaccacc gtttaaccca
     6301 acgccgttct caatcagcaa aagcggaatc cgaatataat ttggatttag cccgtgcttt
     6361 tttaagcaaa cacaatatac cgattgttga acctcacacg ccatacttaa gtgttgaaca
     6421 gcaaaccgtc caggcacaaa aagcaaaatt atgcgaacaa ctcaatatta ccaccgttaa
     6481 aaagtgggta tttgtgcata gttcaaccgg tggttcggca aataatttat ctatagaaca
     6541 gtatgcagag ttaattcaag gtattttggc agaatttgat tgctatgtgg tactcaccgc
     6601 agggaaaggc gaaagcgaaa aagctcagca gttagctcaa caaatcaatc acaacaacgt
     6661 ggtggtttat gataaaaatg aggggttaca agattttaca cattcgcttg cgtgtgcaga
     6721 tttgtttatt gccggctcaa ccggtccgtt acatattagt ggggcgttaa atattccaac
     6781 tattggcttc tacccgagcc gactttctgc cattccacgc cgttggaaac cgattaatga
     6841 tgcgaataaa cacattgcat tttgcccacc gtctgataaa gcctcacaaa tgaatttaac
     6901 tttaatttct atttctgagg cattaaaaac gatagtaccg tttattcgga gaatgtggaa
     6961 tactccctct ctctgataaa attgctaaac gcaattttat ctatctctct cccactagag
     7021 ggagagagta ctgaaaagca tcatttccga gtacgattcc acaaatccgc atattttacg
     7081 aaagtagaat gtgccgaaag aactgccaat aaaaatcctt gcttgccatc taaaaaaccg
     7141 gcttttaata gatacatttt cacaaaacag ccgatggcgt gagtcacgcc atcaaataag
     7201 ctggctgttt tgcctgcatt tgcccgttgg attgcccacg ctttagcgta acttgccgat
     7261 tttaccaaat agtggtgaat atctttatag gtgaaatgca gcaaatcgcc ttgtagtttc
     7321 tggatttttg cctcttttgg gtaatgtact ttttcgtgaa ccaattcatc accatatttg
     7381 gcaaattccg tgcgatacaa tctcaccaca caatccggat accaacccga gtggcgaatt
     7441 tgtttgccaa atacttcact taagcggctg attttgtaaa cggtattttt ttcatcattt
     7501 ttgaccgctt gtaaaataga ttgcttcagt tcggctgtca ctcgctcatc tgcatcaagc
     7561 caaagtacat aatcactggt cacatattgt tgagctaact gacgctgttt accaaagcct
     7621 tgccaatcgg tgttagtgta gaaccttgcg ttgtattcag cagcaatttg tggtgtttca
     7681 tcagtactgc cactatctaa aatcacaatt tcatctaccc aatcttttac tgtgtcaagg
     7741 caagcccgta aatcttgagc ttcatttttg acaatcatcg caacacttaa tgtcggcata
     7801 gtttatcctt ctctcttttt gtcgtgtgtt tttctgctat tcgttgcatt ttactttaaa
     7861 aatagtggtt tttgtgctat tttctacgcc aaattttatc aacaaaacaa attaacggaa
     7921 aaagaatgtc aattacatta acaaccaaac aaaaacaatt cctaaaaggc ttggctcatc
     7981 atttaagccc agtggtgatg ctggggggta acggcttaac agaaggcgtg ttagctgaaa
     8041 tcgataacgc cttagaccac cacgaactga ttaaagttaa agttgccggg gctgatcgtg
     8101 aaaccaaaca attaattatt gatgccattc tgcgtgaaac taaagcggct gaagtacaaa
     8161 ccattgggca cattttagtg ctttaccgcc aaagcgaaga gaaaaaaatc agcttgccaa
     8221 aagcaactaa agcgatctaa ttgcaaaaat atgtttaaat tcaaccgctt gtattcaagc
     8281 ggttttttat aggactttct atgtttaaaa aattctctct ttataccctt gcaatgttgc
     8341 tcattcctgt ggtgacttgg ctggcaaatt ggcactggtc tctggcaatt caatacgctg
     8401 aatttgattt cgactacttt ttatatttaa tcaccgaaac cggctccgta ccttatgcca
     8461 tcatcacctg tgtggttttc gccttattac tggcgagggt ggttcgcaaa cgctactctt
     8521 taatttttgt gattaccgtg tgtgtcgctt caatggtagc cactcaagca atcaaaacag
     8581 cgatgaaatc aacctttcaa gagcctcgtc catttgtcac tgctcttttc caagataaaa
     8641 cagacgattt ttatcaatta acacgcgagc aacgtgggct tgccgtaatg gaaaaaatcg
     8701 gtgcaaatca aaattttgtt accgctcacc aagccaaaga agtgggctat tctttcccat
     8761 caggccacac tatttttgcg gtttcttggc tattattggt ggtaggtttc tgccgtaata
     8821 tgcgaggaca agcggtcgtt ttggctcatt tttttgcaat cagttgggcg gcgttaatgc
     8881 tgattagccg cttgcgttta ggtatgcact acccgattga tttattcacc agtagtttaa
     8941 ttgcgtttct aatcaattta gccttatttg tgtggtttgt gccttggttg gaaagtaaaa
     9001 aatggtttgc taaaaagcct taattggcaa tttagccaaa tcaatataca atacaaatta
     9061 ttgaataagt acctaaaata aggagcttag aatggaaatg tcgatagaaa aaatagctga
     9121 actattaagc gataaagaaa aagatgacta tccgtttagt attgaggaaa gacaatttgc
     9181 cgcccaggct agtgctgata cttgggaggc aatcttaaat aacactattc aaccttttga
     9241 cttcaaaaaa taggcttgct atgtatcaag tttttattgc agaaccaaaa gacccaaact
     9301 tagagaaagg cttattgaaa cacttcatta agtcttatct tactcaagaa gaactcgatt
     9361 tcctgcataa aattctcact aatttaccca acatcagacc tttttggggc gataccggtt
     9421 acaaatatat cgtcattgat aatgtttact tcttgtatga agtttccgaa agtgaaacga
     9481 aagtcattct acttggcacc aaatttaata ataaacggaa aacttttaat tttgcgaata
     9541 cgaaaaccca gcaaaaatca atgaagaaat ggattaatga tttagcaatt tataaaccgc
     9601 ataaaatcaa tcaatcgcaa taagagagcg taattatggc aatttattat ggcttagatg
     9661 tgggcggcac aaaaattgaa ttagccgctt ttaatgaaaa actagaaaaa ctacacagcg
     9721 aacgtgtgcc gacaccgcag acaaattatc aagattggct gacggcaatt aaaacgctgg
     9781 ttgagactgc cgatacaaaa tttgacgaaa aaggcactgt cgggctgggc attccgggct
     9841 ttgtaaaccg tgaaaccggc attgcggaaa ttaccaatat tcgagtggct gacggcaaaa
     9901 cgattctgaa agatttagcc gaatgtttag ggcgtgaagt gcgtgccgaa aacgatgcta
     9961 actgctttgc cctgtctgaa gcgtgggacg aaagtaataa gccttattcc accgtattag
    10021 ggttgattat cggcaccggt tttggcggtg gttttgtgtt tgacggtaaa attcattcag
    10081 gcagaatcgg aatggcaggc gaagttgggc atatgcaact taactaccac gcacttaaat
    10141 tgctcgactg ggataaagcc ccaatttatg aatgtggttg tggcaaccaa gcctgtttag
    10201 acacctatat ttcagggcgg ggttttgagt tactgtttaa tgatttagta ggagaaaaaa
    10261 tctcggcgaa agcgattatc gaacgcttct accaacaaga aaccaaagtg gtggcatttg
    10321 tcgaaaaata tattgagcta atggcaatca gtatcagcaa tctgattacg attttagatc
    10381 cggatatgat tgtattcggt ggcggtttat ccaactttga ttatatctac caagctctac
    10441 caaaagcatt accaaaacac ttaatgcgtt cagcgaaagt gccggtcatc aaaaaagcaa
    10501 ttcacggcga ctcaggtggc actcgtggtg cagcagcatt attcttaaag taatgaacaa
    10561 atttgagaga gggcaagcgg tcatttttaa taaaaatatt gcagccctct cttttaattt
    10621 gccttactgc ttagtttctt ccggtaattt atataactga tttttatata aataactgcc
    10681 aagcaatgcg tgtgctaacg cctctttttt aaacgattcc ggctgttctt taggggtgag
    10741 tttatagtta gctttatcgt agctaaatcc ttctatcggt aaatttggtc gcattaccac
    10801 cacatcattt ccccgcatca tcgcctgtgt cgcatcatat tgcataaagg cacggtttgg
    10861 gtcaatgtct tgcgttaaat cataccctat catcggatat tgaccactta ttcccgccac
    10921 agaaagtaat gttgtcggca tatcgagctg actcactaaa cggttatccg ttcttggctg
    10981 aatgtgttcg cctaataaaa gtgccggaat atggaagtgt tgaattggca ctaaatgctc
    11041 gccaacggct cttgaatcgt gatctgcaat cactaaaaac accgtatctt gccagtactc
    11101 tgattttttc gctaactcaa agaaatgccc gatagcataa tcggcatatt ttgccgcatt
    11161 atggcgagtc tgcttcggtt gttcatagag ttcaattttg ccgtccggaa attcaaacgg
    11221 atcgtggtta ctggaactga ataccaaact aaaaaacggt ttacctgatt tgtgcagttg
    11281 attaaaagtt tcatttgcct tatcaaacag atcttcatca ctcacgcccc aagttgcggt
    11341 aaatttaggg tttttataat ctttttcatc gataatttgc tggaaaccat taccgtagaa
    11401 aaagctcgcc atattatcaa aatgcttctc cccaccataa ataaaggaag tatggtatcc
    11461 ttgacgtttt aataattcgg caatactaaa aaagttagtt tggcttttcg tcagttttac
    11521 cacagatctt gccggtgttg gtgtaaaacc agccgttacc gcttcaattc ctctcaccga
    11581 acgagtacct gttgcataaa gattggtaaa ataccagcct tgttctgaaa gtttatctaa
    11641 atttggagtg agatttttcc ctcctagcga accgacaaat tgagccccta aactttcttc
    11701 taagataatc acaatgtttt taggctttcc ttgataagtc gctttatttt gcgtgagggt
    11761 gggaatttca tctgaaatat aatctgaagc tggtcgatta cgaacctgct taacaatgtt
    11821 gaacatttcc tccacagaca tttttccata ctgttcggaa gatttatctt catctttcaa
    11881 ttgctgaacc gcataaagca cggaataacc tgaatttagc accagtgaat tgacaagcgg
    11941 atcgcttgaa aatgccacca ttgccggatt aatccctcga tgggcaaaac tggaacgccc
    12001 accaacaaaa actattgcag caaccaataa agccagtagc ggacgcattt tccagctcgg
    12061 gaaatgcaaa tttttggttg cccaacccga taatttccaa taaatgatga gagaaatcat
    12121 cgcaatgcca atcccacaaa taacagccca taaatgtccg ttaatcagca ttgtgaacac
    12181 ttctctcgga tggaccaaat actcaatgaa aagacgattt gggcgaaggt caaaggtttc
    12241 aataaaattc ggtgtggcga cttccataaa aagaataaat acactaccga cagttagcca
    12301 aattcttaaa acagtctgcc aaatcgaacc cagtacattt ttatgaaaac acaacacgct
    12361 aaataatgcc ggtaagccaa atagccaaca tagcgaagat atatcaatgc gaataccttg
    12421 tagtattaat ggtatccatc catcaacagc ggatactcga tcagattgcc aaacgcctaa
    12481 cactaaacgg gataaggtga ggataactaa attaatccca acaaatagta ggattggaaa
    12541 tagcacagtt cttgattgac tgcgttggta cattttgaat ctccttttaa aaaaatatcg
    12601 gcatattata attgaataat gacaggatcg cctactttta tcacaccact gttttgtggc
    12661 acaaggtgaa taccgaacac cggcttacct ttttcatcgc aatgcttttc ttttaaggtt
    12721 ctaaacggct ccgatttggg gtctaactca agcgtgttta aatcccgtgt aatcaaaatg
    12781 caacgagtac ataatgccgc tttggtaaat agcacttcgc caatttgaac ttgttgccac
    12841 tgctcttctt caaatgccac attgccatca atcacaatat tcgggcgaaa acgagccatt
    12901 tcgagtggaa tcggcgacca ttgttgcact tgctcaagcg attttagaga catcaaactc
    12961 accgggttgc tatctgcaaa actcattggg tgatcggcaa aattcgcaac aattcgttgg
    13021 ctttgcgagc caagccaacg tagttgcaca gccctaccaa aaatttcact cagccattga
    13081 ttgaccgctt ctgccgccac tttggcatta aaatgtgttc cccacacttc actactctgc
    13141 tcttccacaa aatcttggta aagtgcaacg catttttgac cgcttgtatg ggtaatcatt
    13201 acccctgtcg caatcgggaa agccgctaga cggtataatt ccggatcttt acgggcagta
    13261 ataaatttgc cgttaggctc ggctagcata aattcacggt caaaatttaa gcctttcggt
    13321 tcaacaaatg cctgtgaaac ttgaatagct tgagttgatt ttatcgggta aatattgagc
    13381 tcggtaactt gcatagaaaa tcctccattt ggaaatagga taacaatacc tgcaagcggt
    13441 cgaaaagtaa aaggaatttg caaatccctt gtgagaacgg taaacttgag caacttttac
    13501 agcaataggt cagcaacaat ggcaaagaaa cccactcaag attttgaaag cacacttaaa
    13561 gaattagaag caatcgttac ccatttggaa tccggtgatt taccgcttga agaagccctc
    13621 aacgaatttg aaactgcaat caaattagtg caacaagggc aagaacggtt acaaaaagcc
    13681 gagcaacgta ttcaaatctt attaaataaa aacgatactg ccccacttag cgattacgaa
    13741 agagaataat cacaatgagc tatctattag caaccgatct gactcacctg caacaacgga
    13801 ttaaccattt tctcgctgaa aaattaaaaa caacggatag cgttggttcg cctttagtag
    13861 aagcaatggc ttatgcggta ttgctaggcg gtaaacgggt gcgaccgttt ttaatctatg
    13921 ccaccggcag aatgcttggt gtgccgttgg aaaaattaga tcatagtgcg gcggcaatgg
    13981 aggctattca cgcttactcg ctggttcacg atgatttacc ggcaatggac gatgatagat
    14041 tacgccgtgg caagccaacc tgccatattg cctttgatga agctaccgct attttagccg
    14101 gtgatgcgtt acaaagtttt gcgtttgaac tgctggcaac cgatccgcat ttgaccgacc
    14161 gagaaaaagt tgttcaagtt acagaattgg caaccgcttc cggtgcaaaa ggaatgtgct
    14221 tagggcaaag tttggatttg attgcggaaa ataaagcggt gagcttggaa gagcttgaat
    14281 taattcatcg caacaaaacc ggggcattga ttctatcatc cgtgatgatg ggattaaacc
    14341 tttccgaata ttcgcaaaat gtagccataa aacaaccgct tgtaaactat gccaaagcga
    14401 ttggcttagc ctttcaggtg caagatgata ttttagatgt cattggcgaa acagataaaa
    14461 tcggcaaaat agtgggttca gatgaacact taaataaaag cacatacccg aaattgttgg
    14521 gcttagacgg ggcaaaacaa aaagccgaaa tgctttatca aaccgctctc cattcgctgg
    14581 aacagttgcc tttcgatacc accgcattaa aagagttagc taattttatt gttaagcgtg
    14641 aaaactaaga aaaaacctag ccgaagctag gttttttagt gattaaacgt gaggctgagc
    14701 ttccggcaat gtgccttcaa tttcatatac cacatcgccg tctttaaaga aaacatagcc
    14761 accgtttttc attttggtcc agttttcatt tttggtaagt ggctgagtgg caataatcgt
    14821 cactttatcg gtaattttgg tatattgact aaaatcaatc gacacatcat catcacgcaa
    14881 ggctttgcca aacggtgctt tacggcaaac gtaatgcaga ttagttgtac aacgggcaat
    14941 catccaatga ccgttggata aaacaaaatt aaataccccg tgttccgcaa ttcttgaggt
    15001 gatttgcacc acggcatcaa aaatctcttt ttcgcttggt ttagccggat acatctcttt
    15061 taattccgac acaatacggc aaaatgccgc ttcggaatcg gttgtaccaa tcggctggta
    15121 gtggcactcc tcgcataccc caacaccttc cactgtgccg ttatgggcaa acacccagtt
    15181 ctcgccccat aattcacgaa tgaaggggtg ggtattttcc aaattcacat caccacgcgt
    15241 agctttacga atatgtgcaa taacattgag cgatttaatt tgatattggc tgattgcttc
    15301 tgccatcggc gatgatgctc ccgggcggtt atcacgaaaa acccgaaccc ctttgccttc
    15361 aaaaaaggca attccaaacc catcagtatg gtgatccgtc agcccacccc gacggcgaaa
    15421 tccatcaaaa gaaaaagtaa tatcggttgg cgtattacaa ttcattccaa gtaattgaca
    15481 cataatttgc ttcttaaaac caaataattt acaacaaaaa ataattgtta catttaaaca
    15541 gattgattag aaaattcaat gctctttaca taaaaatctt atgctttatt ttcatacatt
    15601 atgctgttta atggtattct tttttgaata gcgataatag aaaaatcaag ccggcacaaa
    15661 tgactaccga aggccctgct ggtgtatctt tccaactgga taacaataaa ccgccactga
    15721 ctgcaataat actgaagaaa atcgcaatca acaccatttt ttcaggcgtt ttagcaaagc
    15781 gtcttgccgt agcagacgga ataatcagca gtgaggtaat aattaaagca ccgacaaatt
    15841 tcatacttaa tgcgatagtt aatgcggtta aaatcatcag caataaacgt aagcgagcca
    15901 catttaatcc ttcaatttga gcaagttccg ggctgatggt aatcgacaac aaccgcttcc
    15961 aaaacagcat taaaatcaaa caaattaggg ttgctccgat tccgataaac accacatcag
    16021 aaaaattaat tgccagtaaa tcgccgaata agtaagacat caaatccact cgtacattat
    16081 ccaacaaact aatggtaatt accccgagag aaaggctagt atgggcgata atccccaaca
    16141 cggtatccac cgaataattg gttttttgct ccaaccaaac cagcaataat gcaagaagaa
    16201 tagtcattcc aattacagca agatacggat cgagttctaa aaaaatccct aatgccacgc
    16261 cgagcaatgc agagtgcgaa agtgtgtcgc cgaaatacgc catttttcgc cacaccacaa
    16321 aagcccctag aggtgcggta ataaaggcta acaaaacacc ggcaagccaa gccggaaata
    16381 aaatatcaaa catattggtt ctcaaaggca agtaaaacaa gcggttattt tttcggaaaa
    16441 atttgcaaat tttttgctga tttagaccgc ttgtcatatt tatttataac gttgaatcgg
    16501 gctggcttga tcctgtgctt tcagccacgc cattttttct ttaatctgtt tttccattcc
    16561 ccgctcactt gggaagtaga attcggtatc tttcagctca ggcgggaaat aattctcccc
    16621 ggcggcataa gcgtttggct cattgtgggc atagcgatac tcttcgccat agcctaaaga
    16681 tttcattaat tgagtgggag cattacgcaa atgcgccggc acatcgtagt cttttgcctc
    16741 tttagcgagg cgctttgctt cattaaaagc ttgatagacc gcattgctct ttggggcaac
    16801 tgccaaataa atgatcgctt gggcaatcgc tctttcacct tcataagccc ccactcgggt
    16861 aaagcaatcc caagccacaa tcgcaatttg cattgctcga gggtcggcat taccaatatc
    16921 ttcagaagca atcgcaagca gccttcttgc cacataaagc ggatcaccac cggcggttaa
    16981 aattcgggca taccagtata atgctccatc agccgatgag cctcgaatgg atttatgtaa
    17041 cgcagaaatg agatcatagt aacgatcacc gcctttatca aaacgagctt gtcgttcgcc
    17101 taacacttcg gtcagcaaac ttttattcag cactttccct ttagctgaat cttgtgccat
    17161 atctaccatt aattccaaac agttcaaggc aaaacgggca tcaccattaa cataatcagc
    17221 aagcaatgcc agtacatcat cttcaagtac caaagtttca ttgcctaaac cacgttcggt
    17281 atcggctatc gccatttgca aaatttttag aatttcgacc gcttgtaacg gctttaaaat
    17341 ataaattctg gctcgggaaa gcagtgcgtt atttagctca aaagagggat tttcggtagt
    17401 cgcaccaata aaaataatag tgccgtcctc aatatgcggt aaaaacgcat cttgctggct
    17461 tttgttaaag cggtgaactt catccacaaa aagcaacgtt cgtctgccgg cttggcggtt
    17521 taatttggct tgttcaatca cctctcggat ctcttttaca ccgctggtca cagcggaaat
    17581 acgttcaact tccgcatcaa gatgatgggc gataatttca gctagggtcg tttttccggt
    17641 gccgggcggt ccccaaaaaa tcatagaatg actatgtccg gcttcaatcg ctctgcgtaa
    17701 cggtttgcct tcgccaatta aatgagattg cccgacatat tcagccaagt ttcgaggtcg
    17761 cattttggct gcaagcggtc gaaaatcttc actaaaatca aaagacaaac tactcatttt
    17821 aacctcttaa cgtaaccgca gttggcgacg aatatgacgc attaataaga aaatccaaga
    17881 ccaaagcaca ccactgatta cagcacctaa caattcctgt gaattaaatt cggcactgtg
    17941 taaaatgtat tcaatcacga aaataaagaa acggatcagc acaatatatg ccattactaa
    18001 taggctttgt agccatagcg ataagtttcg cagaatcaga tggtatttcg caacaaaata
    18061 aatcgccacc gataacacta aggcgtggat gcctaaaatc gagccaagaa tcagatccca
    18121 gacgatgccg gcaataaaag ccgtccccac actcatttta tcaggtaatg ccaatgccca
    18181 ataaattaac accaaaacga cccaagtagg gcgtagccct tggaatccta ccggccaagg
    18241 cataatctca agtacaaaag caaccacaaa aatcgcaatt atcacaagga tctgaaaaat
    18301 cgggtttgtt ctcattattc cgctccttct tccgtatgat agttttgttc attttccgct
    18361 tctggttgtg ctgccggatt ctcatttatc tcatcattct ctatttgttc ttcttttgcc
    18421 tctagctgca cttcagtttt cttgttagac atctgtttta aacgttcaaa tggattcacg
    18481 ctattacgtc tttcttcaac aacttcacgt acttgcgctg gcgacaagct ttgggagtag
    18541 tttttctctt ccgccgtcgg ccaaagcagt aataagtaac gtaagcgatc aaatgaggct
    18601 aacggacgag caacaattct ggcaaattga cttttggtat cattttcaac cgtttctaca
    18661 atcgccaccg gatatccctc agggaaacgt ccacctaagc ctgaagtcac cagcacatca
    18721 ccttttacca catcaataga acgaggcaag ttatcaatga ccaattcatt attcacccct
    18781 gtaccactgg caatgccacg tacatcattg cgtagcactt gaacaggaat agcatgagta
    18841 atatcagaga gcaataaaac acggctagat ttttccccta cagaaataac ttgtccaaca
    18901 acacctcttt catcaataat aggttgcccg acaaaagcac cgtctaaacg cccttgatta
    18961 atcactactt gctgacgata agcatccatc tcagcagcta atacttcagc aattttttta
    19021 tactcatctt gccgaagcgg agaactcaat aacaatctta aacgctgatt ttcaaccttt
    19081 agctgatcaa gcaataataa atcggcactt ttttctctta gctgctcttt taataaatta
    19141 ttctcaagct gtaatttatt attatcaata aaattgccac ttaccccatc taaaattgaa
    19201 cggggggtat tagcaaaata atataatcca cttaccgcgg tttctaatag attacgcgct
    19261 tgaatcatta aagagctacg cccatcggaa ataatcagca taatagaaaa tatcactgcg
    19321 ataatcaggc gcatccctaa agagggagct ttagcaaaaa taggtttcat tagagaaata
    19381 tatgtgaatt tattgggaat ctataacgaa aattgacaat agaatcaatc cattgccaac
    19441 ctccatttaa acagctgcta agagaaatgt attaatcatc aatactaaat acatcaccac
    19501 cgtgcatatc gatcatttct aatgctttac caccaccacg agctacacaa gttaatggat
    19561 cttctgctac tacgacttgc acgccagttg aatcagaaag taaacgatct aaattatgta
    19621 ataatgcacc acctcctgtt aacaccatac cgcgctcaaa aatgtctgct gccaattcag
    19681 gtgggcattg ctctaagact gatttaactg cctctacaat accatttaat ggttgttcaa
    19741 ttgcttctaa tacatgtctt gagttaagct cgaaagtacg aggagcgcct tcagctaaat
    19801 tgtgtccgtg tacttccatt gttttaacat catcatcgga ttcaatctta gcactagcaa
    19861 tttcttgttt aattcgctct gccgttgctt caccaatagc agaaccaaaa tgacgacgta
    19921 cataagcaat aatagcttca tctaacttat caccaccaat acgcacagaa gttgaataca
    19981 caatgccgtt taaagaaagc actgccactt cggttgtacc gccaccaatg tcaattacca
    20041 ttgaccccat tgcttcgtga accggcaaac ctgcaccgat tgcagccgcc attggctctt
    20101 caattaaata gacttcacgc gctcctgctc caattgcaga ttctttaatt gcacggcgtt
    20161 ccacttgtgt tgcacctgct ggcacgcaca ctaatacacg agggcttggg cgcataaagt
    20221 tattactatg tacttgttta ataaagtgtt gcaacatttt ttctgttaca aaaaaatccg
    20281 caatgacacc atctttcatt ggacgaatcg ccattatgct ttttggtgta cggcctagca
    20341 ttaattttgc atgtgagcct accgccgcaa tactttttag cgatcccata cgatcttgac
    20401 gtacagcaac cactgagggt tcatctagca caataccttg acctttaaca taaaccagtg
    20461 tatttgctgt cccgagatcg atagaaagat cgtttgaaaa taatcctaaa aattttttaa
    20521 acataaaaga atccgttaaa ataaaattat tcaaaaataa gcacatttta tagtgcgaac
    20581 attgctacta atatagcaaa aaagcccgtc attcatcaat gaaaaaattt aaactccact
    20641 agaaaatttg cagagcaagt tgataagtat aaatcagtaa actaaaagcg ataaagtaca
    20701 taattagccc ggtaacagca tctaaaattt gccaagttct tcgctttgca aaataagggg
    20761 aaagtaagct tgctccataa cctatgccaa aaaaccaaat aaatgagcaa agtaatgcac
    20821 ctgctaaaaa gtatatttta ccgttaaaat ctaatttccc accgatactg cctacaatca
    20881 caaccgtatc aatataaacg tgaggattta agaatgtaat cgcaaaggta atcagtaaag
    20941 ccttttttaa gctcgttgca ttctctccac ttgccacaag gtattcacca cttttaaata
    21001 cgctgataaa tgaacggcta ccgtagctta atagaaaaat ggcccctaaa agcgaaataa
    21061 tgaaacttac aacaggcaat tccgcaatta acgtgcctaa gcctagcaca cctatcgtca
    21121 ttaaaaatac atcacctaaa aaacagagca atgcaatcca aaatatgtgt tgttttaaaa
    21181 tcccttgctt taataaaaag gcattttgtg cgccaataga gacaattaag ccaaaacaca
    21241 ctataaatcc ttgaatgaaa atatccattt tttctccaaa atcgcataac aagcggtcaa
    21301 ttatacaaaa aattttgcaa aacttcggta taatttatcg aatactcttt tgactgaata
    21361 ggaaattttt tatgactgat actagccaga cttcatcttg cgttgtcatt gcgattgccg
    21421 gcgcatctgc ctcaggtaag agcctgattg cctcaaccat ctataaagaa ctcaaaaatg
    21481 aattgggaac agataatatc ggtattattt ccgaagatgc ttattataga gatcaatctc
    21541 atctaacaat ggaagaacgg attaaaacca attacgatca ccctaattca atggatcatc
    21601 atttattggt tgaacattta cgccaattaa aacaaggtaa tgcgattgaa attccagaat
    21661 atgactatac cgaacataat cgtaaaacga ccacgaagca ctttgaacca aagaaaatca
    21721 ttattttaga aggtatttta ttgctgacag atgagaatat tcgcaatgaa attaatgttt
    21781 ctattttcgt agatgctcct ctggacatct gctttatccg ccgcttacaa cgtgatatgg
    21841 tggaacgtgg acgttcgatg gaatcagtga ttagtcaata tcgcaaaacc gttcgcccaa
    21901 tgttcttaca atttatcgaa ccctctaaac aatatgctga tattattgtg ccaaaaggtg
    21961 gcaaaaaccg tattgccatt gatattctta aagcacaaat taagcaatta ctaaaataaa
    22021 ataggagcta aatatgcgtt tatgtgatac agatattaaa cgttacttag atgaaggtat
    22081 tattgccata acgcctcgac cttcagacga taaaatttct ggcgccactg cagatgtgcg
    22141 tttaggtaat tcgtttcgtg tatttcgtga acataaaacg ccctatattg atttaagtgg
    22201 ccctagagaa gaagttgccg ctcagttaaa taaagtgatg agtgatgaaa ttatcatcgg
    22261 tgatgatgaa gcatttttcc ttcatcccgg tgaccttgca ctcgcaacaa cccttgaatc
    22321 ggtttcctta ccagccaata tcgttggatg gttagatggt cgttcgtcac ttgctagatt
    22381 aggcttaatg gtacacgtta ccgcccacag aatcgatccg ggttgggaag gcaaaattgt
    22441 attggaattt tttaatgctg gaaaattacc cctagcttta cgccctaata tggcaattgg
    22501 cgcattaagc tttgagattt taagtggtga tgctgcaaaa ccctataatg cgcgaaaaga
    22561 tgcaaaatat aagaaccagc aaagtgccat ttcaagtcgg attaatcaag attaatatag
    22621 tacatgcctt gcaatcatac attaactatg ttagtttttt aatcagttta ttacacagta
    22681 aggagtataa ctatgttaca ttatgcagtc gtattttttg tcatcgctat aatcgcagcg
    22741 ctattaggat ttggtggtat tgctggaagt gc
//
LOCUS       DANLXK010000024        22721 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.024, whole genome shotgun sequence.
ACCESSION   DANLXK010000024 DANLXK010000000
VERSION     DANLXK010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22721
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            107..1615
                     /locus_tag="PXD88_000807"
     CDS             107..1615
                     /locus_tag="PXD88_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL6280405.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1615..1713
                     /locus_tag="PXD88_000808"
     CDS             1615..1713
                     /locus_tag="PXD88_000808"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL6280406.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1761..2024)
                     /locus_tag="PXD88_000809"
     CDS             complement(1761..2024)
                     /locus_tag="PXD88_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL6280407.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2184..3518
                     /gene="srmB"
                     /locus_tag="PXD88_000810"
     CDS             2184..3518
                     /gene="srmB"
                     /locus_tag="PXD88_000810"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL6280408.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(3587..3880)
                     /locus_tag="PXD88_000811"
     CDS             complement(3587..3880)
                     /locus_tag="PXD88_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6280409.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(3882..4544)
                     /locus_tag="PXD88_000812"
     CDS             complement(3882..4544)
                     /locus_tag="PXD88_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL6280410.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(4528..4980)
                     /locus_tag="PXD88_000813"
     CDS             complement(4528..4980)
                     /locus_tag="PXD88_000813"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL6280411.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(5000..5637)
                     /locus_tag="PXD88_000814"
                     /pseudo
     CDS             complement(5000..5637)
                     /locus_tag="PXD88_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
     gene            complement(5681..5950)
                     /locus_tag="PXD88_000815"
     CDS             complement(5681..5950)
                     /locus_tag="PXD88_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL6280412.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            6042..7151
                     /gene="mobA"
                     /locus_tag="PXD88_000816"
     CDS             6042..7151
                     /gene="mobA"
                     /locus_tag="PXD88_000816"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL6280413.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(7206..11717)
                     /locus_tag="PXD88_000817"
     CDS             complement(7206..11717)
                     /locus_tag="PXD88_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6280414.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(11901..12905)
                     /gene="fbp"
                     /locus_tag="PXD88_000818"
     CDS             complement(11901..12905)
                     /gene="fbp"
                     /locus_tag="PXD88_000818"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL6280415.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            13029..13820
                     /locus_tag="PXD88_000819"
     CDS             13029..13820
                     /locus_tag="PXD88_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL6280416.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(13888..14577)
                     /locus_tag="PXD88_000820"
     CDS             complement(13888..14577)
                     /locus_tag="PXD88_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL6280417.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
     gene            14770..15435
                     /locus_tag="PXD88_000821"
     CDS             14770..15435
                     /locus_tag="PXD88_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL6280418.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
     gene            15521..16324
                     /gene="map"
                     /locus_tag="PXD88_000822"
     CDS             15521..16324
                     /gene="map"
                     /locus_tag="PXD88_000822"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL6280419.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(16440..17854)
                     /locus_tag="PXD88_000823"
                     /pseudo
     CDS             complement(16440..17854)
                     /locus_tag="PXD88_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(18161..18811)
                     /gene="thiQ"
                     /locus_tag="PXD88_000824"
     CDS             complement(18161..18811)
                     /gene="thiQ"
                     /locus_tag="PXD88_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL6280420.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            complement(18808..20382)
                     /gene="thiP"
                     /locus_tag="PXD88_000825"
     CDS             complement(18808..20382)
                     /gene="thiP"
                     /locus_tag="PXD88_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL6280421.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
     gene            20643..20900
                     /gene="ptsH"
                     /locus_tag="PXD88_000826"
     CDS             20643..20900
                     /gene="ptsH"
                     /locus_tag="PXD88_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL6280422.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            21022..>22721
                     /gene="ptsI"
                     /locus_tag="PXD88_000827"
     CDS             21022..>22721
                     /gene="ptsI"
                     /locus_tag="PXD88_000827"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL6280423.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     "
BASE COUNT         6427 a         4458 c         4996 g         6840 t
ORIGIN      
        1 ttacattcaa cctgaaattg ggcatattcc gcacttaaag tgtgattaat ttacatttaa
       61 ctcaattctt ttttatataa aactttatca gtttgaggta tttaccgtgt ctaatcaatc
      121 atcaaacgca ccgcaaagag aaacgttctc cggacgtggt gcatttatta tggcggctat
      181 tggttccgct gtcggcttag ggaacatctg gcgtttccct tatactactt atgaaaacgg
      241 cggtggggct tttattctgc cgtatatcat tgcccttttg accgcaggtt taccgctgct
      301 gttcttagat tattctatcg ggcataaata tcgtggtggt gcaccgctcg ctttccgccg
      361 tttcagctcg aaatttgaaa ccttcggttg gtggcaagtg ctgatcaacg tgatcatcgg
      421 gatttattat gcggtggtac tcggctgggc agcaagttac acctacttct cattcagcgg
      481 agcgtggggc gataaaccgg tggatttctt tatcggtgaa ttcttaaaaa tgggcgatat
      541 tactcaaggc gtgagctttg aatttgtcgg tatggttaca gggccgttaa ttgcggtatg
      601 gctgattgct attgctgtgt tggctatggg gatcaaaaaa gggatttctg ctgcctcaaa
      661 cctgctaatg ccgcagttga tcgtgatgtt cttagtgttg gtcggctatt cattaaccct
      721 accgggtgct gcgaaaggct tagatgcgtt atttacccca aactgggaaa aattggctga
      781 tccaagtgtg tggattgccg cttacggtca aatcttcttc tcactctcta tctgcttcgg
      841 gattatgatt acctatgctt catacctgaa aaaagaaacc gatttaaccg gttcaggctt
      901 agtggtgggt tttgcgaaca gtggttttga attattagcg ggtattggcg tatttgcggc
      961 actcggcttt atggcaacgg ctgcagggca agaagtgaac gaggtagcaa aaggcggtat
     1021 cggcttggca ttcttcgctt tcccaaccat tattaaccaa gcaccaatgg gggcattagt
     1081 tggcgtgctg ttctttggtt cactcacctt tgcggcatta acctcattta tctcggtaat
     1141 tgaagtgatt atttcagcgg tgcaagacaa actcaattca ggtcgtgtga aagccacgct
     1201 actagtcggc attccgatga tggtggtatc tgtcttgcta ttcggtacaa ccaccggttt
     1261 accaatgctt gatgtgatgg ataaattcgt aaaccaattc ggtattgttg cggtggcgtt
     1321 tgtttccttg attgcgattg tcaccagcga gaaattaagc acccttgaaa aacacctgaa
     1381 cgaagtttct tcattcaaag tcggctttat ctggcgttta tgtatcgtta ttacctccgg
     1441 cgtactggca tttatgttat tcagcgaaat cgccaaagtg tatcgtgaag gttatgaagg
     1501 ctacccaagc tggtttgtaa acaccttcgg ctggggaatg gcaatcggct tagtggtggt
     1561 ggcttatttg ctatcaaaaa tggcgtggaa aaatgaacca aaaggagatg agtaatgagt
     1621 tcagcagcaa ttattaccat ggtggtggca atgacgatta tctggggcgg tttacttttt
     1681 gcgattaaac gtctgccgaa agaagaacaa taatttgcaa atttttgtat aaaaaagccc
     1741 gcttgttagc gggcttttgg ctatacggta atcccaaatt tctcttccac aaaggcttgg
     1801 aaatcggtgc aaccgccaac gtggttatta tccacaaaaa tttgtggtac agttgcaacc
     1861 ggcttgccaa cacgaggctc taggtcttgt tttgaaatat tttcagcgat catatcaata
     1921 aatttaaaat caaaatcgct taattcttgt ttcattttct cggctaatgt ttttgcacgc
     1981 acgcagtatg ggcaagataa acgtccataa atttcaacaa acatataatg ttccttctat
     2041 aaagtaaaag tgagcgaatt gtccgttaaa cggctctgtg taagtgtaac aattttttca
     2101 accttttagg ataaatttct tcaccatcac ggcaagcagt taatgtgata tactggggca
     2161 aatttacaag tagagaaaca gagatgaccc aattaatgac gtttgaggag cttgatttaa
     2221 gccctcaatt acttaaagcc ttagcacaca aaggctataa ccgcccaacc gctattcaac
     2281 aagccacgat tccggctgcg ttagaaggac gtgatctgct cggttcagcc cctaccggta
     2341 ccggcaaaac cgccgctttt ttactgccgg caattcagca tttattagat tatcctcgcc
     2401 gcaaaccagg ggctcctcgc attttaattc ttaccccaac ccgagagctg gcaatgcagg
     2461 tggcggagca agcccaagca ctggctaaat ttactcagtt gagcattgcg actattaccg
     2521 gtggggtggc gtatcaaaat cacggtgaag tctttaataa aaatcaagat attgtggttg
     2581 ctaccccggg tcgtttaatg caatacatta aagaggaaaa ttttgactgc cgagcggtgg
     2641 aagtgctgat ttttgatgaa gcagatagaa tgttgcaaat gggcttcggg caagatgcgg
     2701 agaaaattgc ggcagaaacc cgttggcgta agcatacttg gttgttttca gcgaccctcg
     2761 agggcgagtt attagaggat tttgccgagc gattattaaa tgatccgatt aaagtcgatg
     2821 ccgaaccaag tcgccgtgag cgtaaaaaaa ttcagcaatg gtattaccac gccgataatg
     2881 tagagcataa aaccaaatta ttagctcgta ttatcagcga attttcggtg gaaagagcga
     2941 ttgtgtttgt ccgccgccga gaagatgtgc gagaactcag cgaaaccttg cgtaagcggg
     3001 gaattcgttc tacttatctc gaaggtgaaa tggctcagac ccaacgtaac caagctatta
     3061 accgtttaaa agaaggcgta gtgaatgtgt tagtggcaac cgatgtggcg gctcgaggca
     3121 ttgatataga cgatattgat ttcgtgctga actacgattt accttatagt gcggatactt
     3181 acttgcaccg tattgggcgt accgctcgtg ctggcaaaaa aggttcggca atttcattgg
     3241 tggaagctca cgattataaa ttactcggca aaattaaacg ttacaccgaa gaagtactaa
     3301 aacctcgcat tatcgagggc ttagagcctc gcaccaaagc cccgaaagat ggcgagctaa
     3361 atgtgaccag caagaaagaa aaagcacgca ttaagaagaa aaaagaggcg aaaaaagaag
     3421 cggcaaaacc aaaagtaaaa gtccgccaca aagataccaa aaatatcggt aaacggcgta
     3481 aaccaagtag tgaatcggct gcggttaaac aggcataatg atacaagcgg ttattttctg
     3541 aagatttttt gcaaaaattt catcaaaaat aaccgcttgt ttatatctac cttactgcca
     3601 tttggaacag aatcacttct gcttggcagc tgaaagtgat ccacattttc atcagaaacc
     3661 cttctgcaat ttgtgtaatt tcgctttgaa tttcacaagg ttcggtttcg accgattttg
     3721 ctttttgtgc gaaaaattcg accgcttgtt gagccagttc ttcgctctca tacaccgctt
     3781 caaaggcaat ttggcggtct gcattatcca acatagaatc gccttttagc cggcacatat
     3841 tatgtgcctc agccgctttt tgttgcatcg ttttgctcat attacacctt atccgtaatt
     3901 tgttttaacc aagtgtagga ttgatgctgt ttttgctcat cgaaaatgta gtttaccgcc
     3961 ataatttcat caatttccac tcgtgctttt agggctttaa gttgttgttc aacgctttgc
     4021 gggctaccaa ttaaggagca ttcggtcatt tggcggacaa cggttttctc ttgtcggtat
     4081 agagcatttt gctcaaaggc aaccggcccg aaatgcggca caatttctgc tttcacaaaa
     4141 ttttcccaca ctttgtcgtc agattcgagc ggtggttgca gattttgttg ggcattggtc
     4201 actacattta agaaaaactg ggtttgggtg gtcgccagtt gtgttgcttc ttcatcggtt
     4261 tctgccacaa tggcattcac acctaaaatc acataaggtt tatctaacac atcagagggc
     4321 ttaaaatgtg agcggtaaat gcggattgca tcgtccataa agcgaggggc aaagtgtgaa
     4381 gcgaaggcgt aaggcaagcc tcgttcagcc gctaaatagg cactttcagg gcttgagcct
     4441 agaatataaa acggcacatt tagcccttgt gccggatagg cggaaacagg gtttgtaccg
     4501 tcaaagtagc cttttaattc gctgatttca tcggggaaag gcaaactctg ggcgtaaggc
     4561 agaggcggtt cgcatatcgg tgccgggggc tcgcccaagc cccagttcta ctcggtttgg
     4621 gtagagtgtt tcaagcgtgc cgtattgttc tgccacaata taagggctgt ggttgggtaa
     4681 catcacgcca ccggagccga ctcttaattt ttcggtgtgg gagagggcgt gttgaatcaa
     4741 taattgcgtg gcggaactgg caagattttt catattatgg tgttcggcaa tccaatagcg
     4801 ttcaatgccg atattttctg cgtgttttgc taatttcacc atagaatcga ccgcttgttt
     4861 ggcagtttgc ccttcacgaa tcggcacaag gttgagaatg gataagtttg tcattttgtt
     4921 ctccgagttt gcatataaaa aaggctgaat agctttacta ttcagcactt gtaaaaccat
     4981 ctccttaata tggggacgat tatttcttac tcaagaagac cacagcgtca atatagcgtt
     5041 ggataaaatc attggtcgag cttgaatcgg aaaatccttc tagattaagc tggtattgac
     5101 cattcacgaa aaacgccggt acaccacgaa tttggaagtc ttcagctaat tgaacttgtt
     5161 tattgactaa accgtttact gcaaagctgt tgataccgct gtcaaactgt tctgcactaa
     5221 tgctgttagc gatgaagacc gcacgaatat cgtccattga tttaaacgca tctttttgag
     5281 cggcttcaaa caaggcggtt tttactttat cttccgctcc taatgccatt gccaatgccc
     5341 aagcacgggt taagttttca gattggcgac ctaagaaatt gacgtgatat tgcactaatt
     5401 tgctgtctgc aggcaatttc gctttgattt ggcttggaat tttgtaattt agctcaaaat
     5461 cgtaacagtg ggggcagtag aatgagaaaa attccaccac ttctttttga gccgatgggg
     5521 ctttacgcac ctcaatatac tctttgccgg cgttggatct gctgcaactg cggttgcgtt
     5581 aaatgcaaaa agggcagaaa gagcaaccag tacggttttt aatgcaaatt ttttcataat
     5641 gattccttca aaaatatgat aagtgagaaa taagacaaac ttaatcgttt aaaattccac
     5701 gagctcggag caatgcggtt ttaaaatcat cttcataatc ttttttaatg cccggaatcg
     5761 gctcaaattt atcggcgttt cgcattttga gctgataaat caaaacctcg tcacgcaggg
     5821 catgaaaatt atccggctcg cttacttcca ccgaaagctg ttgcagaata tcaattaagt
     5881 gaagatcggg gtttttccgc caatgttcgc caagcagttc caatagctct tctaaacgtt
     5941 tgcatttcat agtatgcctc ttaaaaaact tgttgaatag taagcggaat aatatacttt
     6001 tagccctcat ttggcaaaaa aattcaggtt tggagaggga aatggaagag aaaatttcag
     6061 cggtaatttt agccggaggt ttggctcggc gaatgaatgg agcggaaaaa gggttgcaac
     6121 tgttagatca aaaaccgttg atttcgcacc tgttagcccg actttcgcca caaatcgagg
     6181 atatttggct caatatcaat cgttcggtgg aacaatatca acaactttac cctgaattac
     6241 cttattacca agacagcttg cccgattttc aaggcccact aagtggaatg ctttccgggt
     6301 tcgagcagat tgagagcgac tatttactgt ttgtgccttg tgacacgccg tttattccaa
     6361 cccaactatt gcacaagtta cacacggcat tacgcattaa tcaggctcaa attgcctatg
     6421 ctcacgatgg cgaccgccca cacccaacgg ttgccttggt gcatcgttcg gtggcggaaa
     6481 atttaagagc gtatttagcc tccggcgaac gccgattatt gtggtttttt caaacccaaa
     6541 aaagtgtggc agtggatttc tcggcatata aagccgcatt tcgcaatttt aattgtttag
     6601 aagatttaac ggctttcaat ccatatccca tcaaaaccct ggcgattact ggctatagcg
     6661 gcacaggcaa aaccacctta ttggaaaaat taatcccaaa attgaccgct tgcggtattc
     6721 gggttggctt gattaagcat tcccaccaca atgttgatat tgataaaaaa ggaaaagaca
     6781 gctatcgctt gcgagaagca ggagcaaacc cgactatggt cgtgtgtgat gaacgttggg
     6841 cattaatgac ggaaactaag caggcagcag aaactaaaca agcggtcgaa ttttcacaat
     6901 taattgcaaa atttgaccca gagacggtag atttagtttt agtggaaggc tttaagcacg
     6961 aaacaatgcc gaaaattcaa ctacaccgta aagaaattga aaaaccgttg ccggcgttag
     7021 accagtggac aatcgcgacc gcaaccgatt atccgcttga gcgggaaaat cggttggata
     7081 ttaatgatgt tgaacagctt gctgatttta ttcggcagtg gctagaggca agcaaagagc
     7141 cggctaatta attgactaaa aagcccctaa agtaagcgat tgcttagttt aggggctaat
     7201 agcaattacc agctatatcc cagtttgaag ccggcaaaat gttgtttgcc gatttcgtta
     7261 cctttcaata gaccaaggtg agagcttaat tgccattgac cttttgtaac acccacgccc
     7321 acttcagttt tcagataacg tccgaaacgt tggctaaagg tattgtcatt gactgccaca
     7381 ctcaagcgtt tgctgctggc atcgacataa tgtgcggcaa ggctaggctc aactttccag
     7441 ctggagaggt caaaggcctt gctgactttc acacctgctt ggtaggccat aaagtgtgct
     7501 ttcgggctgc ggacttctac ttcacccagt ttgtaatttt gtgcgctgaa gcgatagtaa
     7561 cgtgtaccaa cagcaggctg aacttgtacg ccggctaagt cgaagttatg tccaagattt
     7621 gccccaatcg ccataatatg acggttaaag cggttctccc cgaacaggtc gatacggttt
     7681 ttcgctttac cgtagctacc gtctaggctg acgaaagtgc cgttttccga atgccattta
     7741 ccatataggc ttgccatcag taagttggat ttaccgttca ctccctcatc aaattccgca
     7801 ttagcgtggt tgcgggatag catcacaccg gcattgatac cgtttgcaag cggtaattct
     7861 atgcctaact gagtgaggtt ggtttgttgc tcatacgggc gatataaatc cgattggtgt
     7921 tcggtttttt gatgttcgat actgctccaa acgtggaatt tatcgtgttt tgcgaacagt
     7981 tggcgatcta agtcttgccc gatttgcaac gcagaatttg cctgtgccga tagctcggaa
     8041 agagcggtat tggcatattg gcttacccag tcgctttgtt gaatattact actgtcagtg
     8101 tctgcgtgtg cttgtagatg ctcacaattt gcaccattct cttggcaaag ttttagtgcc
     8161 tcagcgttta aaattgcttc actatttcca gcagttatac gtaaggtagc taattttgct
     8221 tctacttgtt ttgcaatatt ttgtgcagtt tcaaccgctt gttctacgtt agcaatttgc
     8281 gcagcggatg ctttagcatt gttttctgct gtagtgagtg cagcactcgc ttgtgtgact
     8341 ttctgttttg ctaccgtaat ttgcccttgg atttggcggt aatacgttgg atagtaacgg
     8401 cggtagtaat cagcatattg ttgcaaacgg gttaattcgc tatttgcttg gctaagctga
     8461 gattgtgcgt ttgcagcggc ttgtttagca tttttctctg cttggcgctc tttctcggct
     8521 tctgcgttca aacggctgat ttcctgtttt tgtttatccg cttctgcaat agcatggtct
     8581 aattccgctt tcgccgttgc aatcgactga ttccgatctt tagcatcttt taacggattg
     8641 tataagcgat agccgttgct tcgatttgcc agcacataac gatatgcacc taaatcaaca
     8701 taaccgtttt ccagtgaaac tttagcttta tcagcctgag cctgatgggt taaggttaat
     8761 aaacttaacg ggctaaccac ttcagcttct ttgccactgt tgcgtaatgc aagagtgaaa
     8821 gtcccctcgg cgagaccatt tacttgtagg tgatcgcctt tgccagcagc aatatcggtt
     8881 aagtagttga ttttggcatt accttggaaa ttaccgtcaa taatcaacgt attaaaacga
     8941 gtcggtatct cgcctgttac aaatttttca ttcaggttga tggttgaacc gttttctgcc
     9001 actaaattgc cagtacggct atccccagtg tttgtccagc ttgcttggtt agctaaacga
     9061 atgctcgttg ttgctgctgc ttgaatggtg ccaatcaggt tcgctttgcc gatgtgtaat
     9121 tggctctgtt ctgccaagct gacatcacca ttaatttgtg ttgtgggcag tgttgcaaaa
     9181 atttcattag aaacgaccgc ttgtgtatca cagcttgttt taccagtgta ctcagaatag
     9241 tagcaacttg gagtttgctc gttgataaag cctaaatgta gctgagcatg gtcattcgct
     9301 gacaagtttg cttgcaggtt tgagacatta cgaccaacat aaagctgagc gtattggttt
     9361 agctgcatat tatcagcctt aaattgacga ttttgccaat catcggcata aactacatct
     9421 tgcttattga tcgcatcata agcgtgaggg gtcggtctgc cggaaagtag cactttacct
     9481 cctttcacag ttagatcgcc gtttaagttc aaaccaccag agaaggtata aatactattg
     9541 agcttttctt gctctattgg tgcgttttta cgggctaata ctttgttgat cgcttgattg
     9601 cgatctgcag ctaaaaattc ccaatgctcg ctgcttaagc caccgcgagg aacaggttgt
     9661 tttggatcac cttttaatgc aaagtattcc cgaattttcg ttttcggatt ggtgaacaga
     9721 taaatatctg caccagctac tagcccctta ccccaagtta cttcagaggc agttgccggt
     9781 ggtgtagagg cttttggatc atacaccaca ttcaaacgac cgttatgctg ggtgttatct
     9841 gtttcgccaa taaaaccatt aaagctattg tagcgatgct ccagaccttt ttgcgcgagt
     9901 acttgtttta ctgctgcatc cttgttagaa gacaggaagg tccaatgggc attacttgcg
     9961 ccattcgttg gcatatattg gtttggattg cctttgagcg taaagtaatc ggtacggtta
    10021 ttagcatgtg ggttgatata ttcataaata tcagcactgt tttctttcca cgttccccat
    10081 tttaagtccg ttgcttcagg gggcttcggg ccattaatgg tgagtgttgc agctttttgt
    10141 aggtgattat taacaatacg cgcaccatca tcactatttt gaatacgatt aaacgcaatg
    10201 ttgttgccgt tgagatctaa acgaccacca cggaagccaa agtaaatctt atttggatcg
    10261 acttgatcag cactgtttaa tacaacggtt gaacggccgc tcacaatacc aacttggtta
    10321 aatgcagatt ttttgccatt ttcacccgct tgttgggtca aaatgacagt gccttgtcca
    10381 acactaatgt caccaaggtt ttcgccttta ccgttaatat gtagtgtccc ttcgcccaat
    10441 ttagataaac ggtcaccttg tgggtttttg acttgccaat taacttgttt accttttgcc
    10501 actacaattc cagctcctac ccagctttga tcattttcag ggcgaactgt tgcattagca
    10561 ttgaaattta atgcgccagc accttggtca atatcggttt ttaatacgat agtgctatct
    10621 tgtccttcaa tgtttagggt ttttccggtg ttatcttgcg gaagttgtag ctgaggtgtg
    10681 ccaccatagc ctaatggaga agcgctattg tctttaattg aacgatcagc aagcgaaacc
    10741 gttaagtttt tccctttatt accaatgcta ctgtctttac cctgtgcaga ccattcaaaa
    10801 acggcatttt gttgcgcatt ggttaatgtg ccggcaatat cttcggcaaa ttgtttatcg
    10861 tgataatcct gacggataat accggcacgg ttgtagtagt tgtttgcagg cgtaccaaag
    10921 gtgtaagtag ccagtagtag ccagcgtttc gttttctgat cgtagccata cacacctgaa
    10981 ccgctatcac cacgagtacc aaatgcagtt aatgctccat atgggctatt gtttaatgca
    11041 tttcctctaa aatctagcca gtaatcggaa ttatgtaccg cgattggtaa atgaactccc
    11101 ccggttaaat attggtaaga tgttgaaatt tggttgtctt tatgctcggt atttttgact
    11161 atttgacgac cagagcctaa gcgagcaaag tgagtaaaac gactactatc ttggtaggct
    11221 gaagcattat tacccagatc agtcactgtt gcaggtgcga cctcagtgac taatttattg
    11281 agacgtggca cttgataatc ttgatgttgc ccaccttcaa caattccata gtcgttacga
    11341 tcaacgactt tgtaagtgta gtggtgtgca tcggcattag tgcctggggc gccaaattcc
    11401 acagtattgt attgtgtatt atgggcaacg ctgactaaat attgcggtgc aactagagtt
    11461 gctatcccta agttacggtt tgcagcacta aaatctggca tcggtacatt tgggaagagt
    11521 gcatctaatg tattgccact tttatcttta atttcaatat tgcttgcacc tacggtgaat
    11581 ttacccttat tctccgcaaa atcacggtag tattgaagat cgatatcatc tctgaaaaca
    11641 gaggctgttg cagataaact aacagcaaat gccacaaagc tggcaaggta agaaagtgga
    11701 aagtttttat ttatcataaa atgttaataa attgctaata ttaatggagt aaaaaggtgg
    11761 ggtattctat agataattat ttatttggca agaggtctta cctgtttttt atacaaattt
    11821 acaatcttaa gataggcaaa agcagctacg gaatacgcag ctgctttgtt gaaagtttta
    11881 ttgagtgata agcaggagca ttattttgca aattcttgca taaattcgcc cgcttgtttg
    11941 accattgagg ttgaaccgac aaagaacggt acacgctggt gtagctctgt tggcttaata
    12001 tctaaaatcg gattaatacc atctgtcgcc attcctccgg cttgttcggc aagaaacgca
    12061 atcgggttgc attcatagag taaacgcaat ttcccttttg gatatacggt ggaggttggg
    12121 taaatataaa taccgccttt taataaattg cggtggaaat cggacaccag cgagccgata
    12181 tagcgtgaag agtatggacg tttgatggct tcatcggttt cttggcaata cttaataaag
    12241 cgtttcacac cttgtgggaa agtaacatac tgcccttcat tgatggagta atattttcct
    12301 tcggtagggg tttttagatc agggtgtgaa agaataaata agcctaatga cggatcatag
    12361 gtaaaaccgt tcacgccatt gcctgtggtg taaaccagca tggttgaaga accataagta
    12421 acataaccgg cggcaacttg tttacgccct tcctgcaaga aatcttcttg tgttactggg
    12481 gtgccgatag gggagacacg gcggtaaata gagaagattg ttcccacaga aacattcact
    12541 tcaatattgg aggagccatc aagcggatcg gtcattaaaa tatattttgc atttctccca
    12601 cgctcattat caaaggcaac aaaattatca tcttcttccg atgcaaagcc ggcaacatct
    12661 tcacgtgcaa gtaacgcttt tttcatcgtt tcgttggcga atacatcaag tttcatttgg
    12721 gcttcaccct gtacattttc agaacctgca gtacctaaaa tatcttgact taaaccggca
    12781 cggttgattt ctcgatgaat aattttagcg gctaaacgaa tagaagataa aatcccactt
    12841 aattcccctt ttgcccctgg gtattctgct tgtttttcaa taataaattc gccgagtgtt
    12901 ttcatttttt tctccttcgc tatgttagaa tgcccttatt ataacgatta cctttaaaga
    12961 ggtagcggtt taagctttaa ttctgtgatc cacttcacat tttatctttc aagatgagga
    13021 gcaatacgat gaataatcta cgaatcaaaa tgatcagccc tgaaatagca ttagcaaaat
    13081 ataatgaatt ggatgtttta gagattaatc actccaaagt gaaggctaaa attgcattgc
    13141 aaggtgcgca gttactgagt tggcaaccta aaaatactca gcaagatgta ttatggttaa
    13201 gtgaaattga acctttccaa acaggtgtgg cgattcgtgg cggcattccg atttgccacc
    13261 cttggtttgg tacagacaaa aagcctgctc acggcacagc ccgtattcaa gcgtggaatt
    13321 tgctggaaca tacttcctca gcagatggga ttcgtgttgt tttggggtta gaaaatcagg
    13381 caaaactcga gatgatacta ggcgaagtct gtgagttgta ttttactcac ttagcaccgg
    13441 agccggcaca ggctgcattg catacttatt ttcaggtcgg tgatattacg aaaacggaag
    13501 tacaaggctt agcaacacaa tgttttgata aattgacaaa tcaagaaatt gaagtgccat
    13561 cacctcgcaa gataagtgaa aatgtggatt gtatttatcc ggcacaagcg gtgaatttta
    13621 ttcaagattt tgcaaatcag cgcaccatta aagttgagca tattaatgct accgaaaccg
    13681 tactttggaa tccttggcat aataccgtta gtgcgatgac agaaacggcg tatcaaaata
    13741 tggtatgtgt ggaaacagca cggataaata ccttacttca acaaaatgaa acgctaggag
    13801 tgagaatttt ggtgcgataa tgtttaatga gagcaagcag ctgaattagt aatatttttt
    13861 acaaatttaa ccgcttgtct cttgtattta cactagatca aacagtaaaa attccacgtc
    13921 atcttgagtg tttatttcaa gtgctttctc ttgacgaatg cctaaggcat cgctggtgga
    13981 aagttcaacg ccattgatgt ttagattccc tttcaccact tgtagccagt aactgcggtt
    14041 tggctctaat gccagttgct ctgatttggc tgttgggtat tgataacgcc acagcttcat
    14101 atcttggtaa attttaaatg aaccttcttc tgcgtttggc gaaagaatca aggttgctcc
    14161 ctctttcggg gcaaatctat cttggttgta gcgaggggtc acatcttttt ggtttgggat
    14221 aatccaaatc tggtaaaggt gtaaggtttc attcggatct ggattaattt ctgaatggaa
    14281 aaccccggtt ccggcagaca taatttgaaa ttcgccagct tttacttcgg ttttattacc
    14341 catactgtct tcgtgagcca cacgtccttt taacatataa gttaaaattt ccatattatc
    14401 gtgcgggtgc ttgccaaaac cgtgattagg tgcaatgaaa tcttcgttaa ttacccgtaa
    14461 atgtgaaaaa tggatatgtt ttaggtcgta ataattggca aaggaaaaag tgtggtagct
    14521 tttaagccag ctaaaagaac catcgcctcg ttcattggct tttctcagtt gtaacattat
    14581 ctattcctta tgtaagtgtt aagttgtgcc attttacttt atgtcaaaaa tagataaacc
    14641 ctaatttaat agattaattg tttcattttt tgaaataata tgagcttgat ttttatggga
    14701 aaatgtatag aataatgccc ccttgagttc ccttacctca agttttcatt taacgaaaaa
    14761 ggatacaata tgaactttac tacttatttt tcggatgaga acaaacgtcg ttctctaatt
    14821 ttactttcac ttttccatat ttttatcatc gcaattagca actatttagt gcaaattagc
    14881 tttgaagttc aagtaccact aacagaattt agctttccga caacttgggg aacgttaaca
    14941 ttcccattta ttttcttagc gaccgattta accgtgcgtg tatttggtgc agatcttgct
    15001 agaaaaatta tttttgttgt gatgtttccg gcacttgtca taagctatgt gatttccgtt
    15061 ttattctttg aaacccaatt tcaaggcttt agtgcattaa ctgagttcaa cttttttgtt
    15121 ttccgtattg cactggctag ctttgcagct tatttagttg ggcaattatt agacgttcta
    15181 gtatttaata gtttaagaca aggtaagcgt tggtggcttg ctccaacctg ttcaaccatt
    15241 tttggtactt taatcgatac ttttgtattc tttgctatcg ccttttataa aagtagcgat
    15301 gaatatatgg cagagcattg gtttactatt ggttcggtcg attatgcgtt taaactcttt
    15361 gtgagcctac tgctatttct accgctttat ggtgtgatat taaatttcat tatgaagaaa
    15421 cttgatttaa agtagaaatc taaactgagg tttggggatt gtgctgaaaa aaggtataat
    15481 ccccttactt tttatggcag atatagcaga gagcaatgta atgaataata ttccattaag
    15541 aaacgaagaa gaaattcaaa aactacgagt agcctgtaaa ctggcttcag atgttttagt
    15601 aatgatcgcc ccttatgtga aagagggcgt aacaactggt gaattagata aaatttgtca
    15661 cgaatacatt ttggcaaatg gggcaacttc agccagtttg ggctatcacg gcttcccaaa
    15721 atcggtgtgc atttcgttaa atgaggtcgt ttgtcacggt attccaagtg atgacaaaaa
    15781 gctgaaaaaa ggcgatattt taaacatcga tgtgacggtt atcaaagatg gctactatgg
    15841 cgataactcg atgatgtatg tagtcggtga gccaagtgtg cgggataaac gcttaatggc
    15901 ggttacgcta gagtcccttt atgtcgggat tcgcaccgtg aaagcggggg tgcgtttaaa
    15961 agaaattggt acagcgattc aaaaatatgt ggaaaaagaa ggcttttcgg tagtacgaga
    16021 atattgcgga cacggtattg gtactgaatt ccattgcgac ccacaagtag tgcattatgc
    16081 taccgatgat ggcggtgtag tgttaaaaga aggaatggtg tttacgattg agccaatggt
    16141 gaatgccggc aaaaaagaag tccgcttaat gggtgacggt tggacagtga aaaccaaaga
    16201 ccgcagccac tccgcacaat atgagcatca aattgtagtt accaaagacg gctgtgaagt
    16261 gctgacaatt cgtgatgaag agattgccga agggcgtatt tctcgaatta tgcacaacag
    16321 ctaatttgca aatttttagc gaaaaatgac cgcttgcgaa actcattgtt aagctaaggc
    16381 gtttaaaaac aaaagggatt aagctaacac ttaatccctt ttttgtgatc tatttttgat
    16441 tatttcgctt gtgctttttt cacccaaatg gctgaaatgg taaatgcaac tacaaatgaa
    16501 attaccatac cgacagaata cattgcaagg ctgtcaggtt taatcgacgg aatacctaag
    16561 aaaccggctg cacctaaggc aattgctttc acattaaaga aagcgataaa tgcactggct
    16621 aaacctgaac cgatcatcgc cgcaataaag gcttggcggt agcgtaaatt tactccgaac
    16681 attgccggtt gatacctaac agggctgaaa tacctgacgg cacggctaaa ccacgcactt
    16741 tggcatcttt cattgcaaaa gctacaccta aacaggctgc accttgtgca atgttagaca
    16801 ttgctgcaat cgggaagata aatgtaccgc cggtttgtgc tacttcagct aataattggg
    16861 tttcaaccgc aataaaggtt tggtgcatac cggtaatcac gattggagcg tagaatgtac
    16921 cgaaaattgc tccaccgata aagcctaagc tgtcatataa ccacgttaag cctgctgaaa
    16981 tcgctgaacc tgcttcacga cccaatggtc cgattacagt gaaagctaaa ataccggcga
    17041 taaataatga catcattggc gtcaccaagt tatctaaata gcttggcaca aatttacgga
    17101 aagttttctc aagggttgct aacacccaag ccgaaacgat agttggaata accgtgcctt
    17161 gataacccac tttttcaatt tctaagccga aaatattcca gtatttgatg ttaccttcca
    17221 ttaaggtttt ggcatagttc caaccgtctg caagtgccgg gtgaaccaat aacataccaa
    17281 gtgccgcacc taagaatgga ttaccgccaa atttgcgtgt agctgagaaa ccgagtaata
    17341 caggtaagaa tacaaatggt gcgttagcaa tagtgttgat gaaatcaact aaatcggaaa
    17401 tattcggata acggctaaca acagattcac cttcccagaa gaaaccgact gccgttagca
    17461 ttgagtgaat acccattaac aaaccgccag ccacaatagc cggaatgatc ggcacgaaaa
    17521 tatcggctaa gccttttacc aaacgttgta gtaatggctg atttgctgca ccggcagccg
    17581 ctacttcaga ggtggacata tctgccatac ccatttgttt ttgcatttgg gcatacactt
    17641 catttaccgt gcctgatcca aaaataattt ggtattgacc gggagtagag aattgacctt
    17701 tcacgccttc aatattttca atcgcctctt tatcaatttt ggattcatca gcaatggtta
    17761 agcgtaaacg ggttgcacag tgggcaagtg tggtaatgtt ttctttgcca cctaattttg
    17821 caatcgtttg ttctgcaatt tttggatagt tcatttgaat ttacctttca taaaaaataa
    17881 tcggttgcat tttaactaaa tcggtttagc taaaaaagag aagatttaaa atatttccaa
    17941 atttgtgaag tagatcacat tttggggaag agaatagcgg aatagggagg taatattagt
    18001 tacagttccc ctctttgcta aagtaggggg cgagttctga aaaaaatgaa taacgctagt
    18061 atccgtgcgg aacatcattc accgttagat tgttggaatt gacatcgttg cgtacgccag
    18121 cgtggcgtcc ctacatttag aacctagcag atctgctttg ctaaagaggg gagagatcag
    18181 aaacaatctc cccatctgct accgttatca cccgattaaa tagaaatagg ctttcggata
    18241 gttggtgagt taccattaac agggttagat ttctgctttg gcaaatgtca aacacgattt
    18301 gctgtaattc ggctcggcgt tgcgggtcga gggcggagaa gggttcgtcc aataataaaa
    18361 tcggcttatc ccgcaacaaa gtacgagcta atgccactcg ctgtttttgt ccgcccgata
    18421 gctgatcggc ttgacgctga aggaaggttt caatccccat ttgtgtggca atttgtttaa
    18481 cctgtgcttt ttgtttcgga ttgagcgaca aacttggtac taaagctaag ccgatgtttt
    18541 gttctaccgt taagtgcggg aaaatattgt tatcttggaa tagcattgaa acaggacgtt
    18601 gtgcaacttc ggtatcaaga tgatttttct gatttagcca cagctggctt tgctgacttt
    18661 ctgccttttc aaaaccggca attagattaa gtaatgtgct tttgcctgcg ccactttcgc
    18721 caaccactgc aatacgttcg ccttttttga cagaaagctg aaagtgcata ttcatttgtt
    18781 cgtaagtgaa atggagatcc agttcgatca tagtttatcc ttgctgaata agaatggtag
    18841 taacgcaaat aacatcagaa tgagtgcggt aacggcagca tcttcggttc tatagctacc
    18901 aagttgttgg tagagtaaat aagggagtga gctgaaatca gcgttgccga aaaaagcaat
    18961 gacggtgaaa ctgcctaagc tcgatgacat tgctaacgca aatacggtaa caagcggtcg
    19021 aattagttga tttttttcca caatccacca acggcgaagc ccctttagcc caagtccttg
    19081 tgctaatttg tcgtgcgagg tgaggctatt ccacattgcg gagaaaagca ttgggtaaat
    19141 aaatggcagt aatgttaagc cgttgcatat cccgaccagt agcagtaatg cctcgcttga
    19201 gagttcacta ttcattaata aaataaacaa accaaccgat aataaaaaga tcggcagaag
    19261 taaggggaat agggtgattg cggtgagaat gctatatctg agcttggctt ttgtatagag
    19321 taattggcga gcttcaagtg caatcaaata gctgattgtg attacgaata tagaagcaat
    19381 taaacttaag tataaagaat actgagtagc ttgccataaa gtagggttga gcaaacgctc
    19441 actgagtttt gacacgctta gtcctgccca aatgacgctg acaagcggta gaattattgc
    19501 aaaactttgc aaaaaaataa ccgcttgtaa gccgagttta gccagtccgg taggctttgg
    19561 tttccaaatt tctactcggt taggttgctg ttttagcttt ttgagtgcag aagtcgagat
    19621 ataattcatt actaattgta agccaatgcc cactacaaat tgtaccccaa ttaagatgag
    19681 ggcttttgca aaatcaaatt caaaagtgac cgcttgataa atggcaactt caagcgtgct
    19741 gtattttggg ctaccgccta acattaatac gattggaaaa ctggtaaagc agaccagaaa
    19801 aacagtcata aacatataag gcagcaaagt tttgattatc ggtagttcca caatttggat
    19861 ataattccaa cctgttaggt ttaattgagc cgcaagctga aagcgactgc ttggagtcaa
    19921 ttgaagccct ccggtataat atttcatcac aaacggaatg ttaaacaggc agtgagccaa
    19981 aatgatgccg tgcaagccgt ataaattaaa ttgccaattc caaccgagtt gttggaaaag
    20041 tttggctagc cagcctgagt taccaaatac gccaattacc gcaaaaataa ttactagtga
    20101 gggtaatgcc cagataaacg aaatggtttt atagagtaaa ttttttcctt taaagtccaa
    20161 ataaaagaaa gatcttgcca gtaggctgcc taaaaatagt gaaattaccg cagagaggct
    20221 ggcttgaagt aggctataag cgaccgtggc cgttatatcg gaaaaaacaa ataaggtatc
    20281 attttggtga tagtccatta acgcccatag actaaaaaca tagagagcaa taatactaaa
    20341 gtagataaac catgcggttg ttttggttaa tgtgctaagc atattgctcc aaatttagaa
    20401 tataagtgaa agaagtggta gcgaaattat tgtaacattt ccgcttaagt gtgtgctaga
    20461 atcttgatat tcgacaaatg atttttaagt tagcttaaaa aacaccctat ttagcagggt
    20521 gatacgacga gtttttgcgc tttttagcgt gtttttaatt tgaatttgta gtaaagttgc
    20581 gtgcgcaaaa taaatggatt aaaacaaatt tttttaactt tcaaatttaa gaggaagatt
    20641 ttatgtactc aaaagatgtt gttattaccg ctccaaatgg tttacacact cgcccagcgg
    20701 ctgaatttgt aaaagcagct aaaggttttg cttctgatat cactgtgact tcaggtggta
    20761 aaagtgcaag tgcaaaaagc ttattcaaat tacaaacatt aggtttgact caaggcacaa
    20821 caattacaat ttctgcggac ggcgaagatg agcaaaaagc agttgatttc ttagttgatt
    20881 tgattcctac tttagaataa tttttctatt ctcggattta agatttatgt cactttattg
    20941 tagcttaata agctacaata aagtgttttg ctatgtaaca tccagatgat ttttacatca
    21001 tcttaaatta aggacacaat tatgattaca ggtatcgcag cttcccctgg tgcagtattt
    21061 ggaaaagcat tggttttaaa agaagagccg attgtactaa atactcgcaa aattactgaa
    21121 agcgaagttg aggcagaaaa agcaaaattc tttacaggcc gcgaaaaagc agctgctcaa
    21181 ttaaccgcga ttaaagaaaa agctcgccgt acattaggtg aggaaaaaga ggcgattttc
    21241 gaaggccact tgatgatctt agaagatgaa gagcttgaag aagaaatttt gagttacctt
    21301 actgataatc ttgtgactgc ggatgttgca gcaagtaaag tgattgagat gcaggcttca
    21361 atgcttgcgg aaattgacga tgaatattta aaagaacgtg caggtgatat tcgtgatatt
    21421 ggtaaccgct tggtacgcaa tattttaaat atgaatatcg tagatcttgg tgatattcaa
    21481 gatgaagtta ttttagtcgc ttatgactta accccttccg aaacagctca attaaattta
    21541 gataaagtat taggctttat taccgatgtc ggtggtcgta cttctcacac ttctattatg
    21601 gctcgttccc tagagcttcc tgccattgtt ggtactaaca atgttacttc cctagttaaa
    21661 actggtgatt ttctgatttt agatgcagtg aacaatgaag tacatttaaa tccatcggaa
    21721 gaaaaaatcg ctaatttcaa agcattacaa gagaaattaa atgcggaaaa agaagaatta
    21781 gccaaattaa aagagttgcc tgctcaaaca ttagatggcc ataaagttga tgtggcaggg
    21841 aatatcggta ctatccgtga tgtggaaggt gtattacgca acggtggtga agcggttggt
    21901 ttataccgta ctgagttttt gtttatggat cgtactcaat taccgggaga agaagagcaa
    21961 tttcaagcct acaaagagat tgttgaagca atgaatggtc aaatggtcat tctgcgtacg
    22021 atggatatcg gaggtgataa agagttacca taccttgatt taccgaaaga aatgaaccca
    22081 ttcttaggtt ggcgcgcggt gcgtatcggt ttcacccgcc gtgaaatttt agatactcag
    22141 ttacgtgcgg tattacgtgc ttctgcgttc ggtaatttag cggtaatgtt cccgatgatt
    22201 atttcggtgg aagaaatccg tttattaaaa tccatcgttg cggaattgaa agatcaatta
    22261 cgtgcagaag gtcacgcttt tgatgagaac ttaaaactag gtattatggt ggaaacccca
    22321 tcagcagcgg taaatgcacg tcatcttgca aaagaagccg acttctttag tattggtact
    22381 aatgacttaa cccaatatac acttgcggta gatcgtggta atgaaattat tgctcattta
    22441 tataacccat taagcccatc agtcttaaac ttaatcaagc aagttattga tgcttcacac
    22501 gctgaaggca aatggacagg tatgtgtggt gaattagccg gtgacgtgcg tgcaactgcg
    22561 ttgttgctcg gtatgggatt agatgaattt agtatgagcg gtatctctgt gccacacgtt
    22621 aaaaaactca ttcgctcaat taattttgcc gatgctaaag cattagctga tgaggcgctt
    22681 gctcagccaa ctgctgcaga tattgaacgc ttagtagatg a
//
LOCUS       DANLXK010000025        22655 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.025, whole genome shotgun sequence.
ACCESSION   DANLXK010000025 DANLXK010000000
VERSION     DANLXK010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22655
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            32..751
                     /locus_tag="PXD88_000828"
                     /pseudo
     CDS             32..751
                     /locus_tag="PXD88_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            811..1260
                     /locus_tag="PXD88_000829"
     CDS             811..1260
                     /locus_tag="PXD88_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL6280424.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
     gene            1361..1882
                     /locus_tag="PXD88_000830"
     CDS             1361..1882
                     /locus_tag="PXD88_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL6280425.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSFINVDGVSGQLESKCIKLSLNKENEILQFEQLGRV
                     YVAAKNKRSTCKD"
     gene            1914..2540
                     /locus_tag="PXD88_000831"
     CDS             1914..2540
                     /locus_tag="PXD88_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280426.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVLKEIVGFKVENNEIYTFSSQLDNCVKEQCQTLLENCDGNWSKFTEA
                     NNFKTKKLDFSWRQEDNLLKIELEIESPKQKGLIYTAVRYVFILNNTR"
     gene            2543..3226
                     /locus_tag="PXD88_000832"
     CDS             2543..3226
                     /locus_tag="PXD88_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL6280427.1"
                     /translation="MNKYKNASALLVSLILISTILSVLFLSKEKWLGQQNITHFYREK
                     YLSDQYNFLALYPQDKTQICQKFQKEQISQADLSDKQFRFLQYQFACQFHSLFKDKKP
                     TKEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSEREPKIVLAKNAINENLPQE
                     FYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEVLAELEARYSAWRYLPYS
                     EHLMGAVDD"
     gene            3219..3512
                     /locus_tag="PXD88_000833"
     CDS             3219..3512
                     /locus_tag="PXD88_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL6280428.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            3561..6851
                     /gene="recC"
                     /locus_tag="PXD88_000834"
     CDS             3561..6851
                     /gene="recC"
                     /locus_tag="PXD88_000834"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL6280429.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            6987..9932
                     /gene="ptrA"
                     /locus_tag="PXD88_000835"
     CDS             6987..9932
                     /gene="ptrA"
                     /locus_tag="PXD88_000835"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL6280430.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(9981..11627)
                     /locus_tag="PXD88_000836"
     CDS             complement(9981..11627)
                     /locus_tag="PXD88_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6280431.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            11703..13793
                     /locus_tag="PXD88_000837"
     CDS             11703..13793
                     /locus_tag="PXD88_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL6280432.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            13864..15552
                     /locus_tag="PXD88_000838"
     CDS             13864..15552
                     /locus_tag="PXD88_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL6280433.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLGAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            15564..18380
                     /locus_tag="PXD88_000839"
     CDS             15564..18380
                     /locus_tag="PXD88_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL6280434.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            18503..18634
                     /locus_tag="PXD88_000840"
                     /pseudo
     CDS             18503..18634
                     /locus_tag="PXD88_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(18689..19450)
                     /locus_tag="PXD88_000841"
     CDS             complement(18689..19450)
                     /locus_tag="PXD88_000841"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL6280435.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(19462..20493)
                     /gene="murB"
                     /locus_tag="PXD88_000842"
     CDS             complement(19462..20493)
                     /gene="murB"
                     /locus_tag="PXD88_000842"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL6280436.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(20597..21271)
                     /gene="crp"
                     /locus_tag="PXD88_000843"
     CDS             complement(20597..21271)
                     /gene="crp"
                     /locus_tag="PXD88_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL6280437.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(21333..21551)
                     /locus_tag="PXD88_000844"
     CDS             complement(21333..21551)
                     /locus_tag="PXD88_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL6280438.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(21554..22159)
                     /gene="slmA"
                     /locus_tag="PXD88_000845"
     CDS             complement(21554..22159)
                     /gene="slmA"
                     /locus_tag="PXD88_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL6280439.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(22171..22626)
                     /gene="dut"
                     /locus_tag="PXD88_000846"
     CDS             complement(22171..22626)
                     /gene="dut"
                     /locus_tag="PXD88_000846"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL6280440.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
BASE COUNT         6916 a         4592 c         4879 g         6268 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctac ttttaatact cgtaagcccc cttttgataa
       61 ccctaaagtt cgtcaagcat tgaattatgc ggtgaataaa actgaaattt taacttccgt
      121 ttaccaaggc tctgcaacgc cagctaaaaa cccaatgcct tctacgattt ggggatataa
      181 caacgaagta gccggttatg aatttaatcc ggaaaaggcg aagagcttgc ttaaagaggc
      241 cggattagaa aatggctttg aaacagaaat ttgggcaatg cctgtttctc gcccttacaa
      301 tccaaatgcc cgtagaatgg ctgaaatgat tcaagaggat tggaaagcaa taggggtaga
      361 ggcaaagata gtgagctatg aatggggaga atatcttaaa cgaatgggaa acggcgagca
      421 cgctaccgga atgattggtt ggaccggaga taacggcgat ccagataatt tcctcaatgc
      481 cctactcagt tgtaatgcgg tagaacaagg ctcaaactat gcagggtttt gtaatccaga
      541 gtttgaccgt ttaattaatg aggctgcgac tatcagtgat caaaacaagc ggtcagattt
      601 atataaaaaa gcgcaattca tctttaatga gcaagcacct tggttaccga ttgcacattc
      661 aacggtgtat tttccggtaa ggaaagaggt aaaaggctat gttgtcagcc cgtttattgc
      721 tcataatttt tatggtgttg agctggaata acctaaggta taatgaattg aactcatttt
      781 gtgcctcata aatttaggag caataaatat atgttagcga aacttaagtg gaatcaatta
      841 gcttgtgtaa cattggcatt ttgttcagcc tcagtatttt cagcccatca cgaaatcaaa
      901 atgttagata acaatgcgga aggatcaatg gtatttgagc ccggttatgt aaaagcagag
      961 gtgggcgata cggtaacatt tattccgtct cataaagggc attgggttga aagccgctcg
     1021 attccggaag gtgcggagaa gttcttatct aaagaagatg aggaatttac tattaccctt
     1081 actcacgaag gtgtttatgt ttactactgt ccgccacacc gaaccatgaa tatggccgga
     1141 attatccaag taggacaagc tctcaatctt gaagccacac aaaaagaagt ggaaaaaatt
     1201 gaaaaacgca cgaaagaaaa taaaggacgt ttatttgaat atttagagca agttaagtag
     1261 aagtgattta attttgcgat ctgcatcgaa aaatcaatat ttaatagttt acaaatgatg
     1321 cttaaattct aagataccct ctatcaatga gggtattttt atgtataaag ccatcacatt
     1381 aattgaaata ctaaccacta tcactattat ggtgatcgct gtttatttta tctcgccggt
     1441 tatttttaca ctgcaagatc gaattgcact tcatagtgaa attgaaaata tccaatcttt
     1501 tattcagcaa atccaaacta aagcacgtta taccaaacgt aattatacct taaccctttc
     1561 tcagcggaat aatcagtggt gtatgattgc ggtaattaag ccaatcaata ctagcaaaca
     1621 aattatttgt gattgtttga ataaacattt ttgtgattta ggaaaagaat atcatcttta
     1681 tacgccgact catcagcaga ttgtattaaa aaataaaagt ttatatccga aatcctttat
     1741 taatgttgat ggggtaagtg gtcaattaga atcaaaatgt attaagctca gtttaaataa
     1801 agaaaatgaa attttgcaat ttgaacaatt aggacgggtt tatgtggcag caaaaaataa
     1861 acgtagcacc tgcaaagatt agtttatctg cttttagcct aattgaagta ttaatggcta
     1921 gtgcattagg ggcgttttta ttattgcttg ttgcttcaag ttatgccgat ttctattaca
     1981 cacaaaccaa acaaaaagaa cagctctact tgcaagcaga agctcaccag ttactaaact
     2041 acttccaaca gcattttcaa cacattggct atcaaggctc tcacagaaca gacagtaatt
     2101 ttgatttatt tcagcaagca gggaaaagcc tgaatattgt gcataaaaat tgcattattg
     2161 gattttacga tttaaaccaa gatggctgtt tgggaaaacg taagacaaaa acggccgctt
     2221 gtaagttagg aacagtgaat aataccagag aggtgttaaa agaaattgtt ggctttaaag
     2281 tagaaaataa tgaaatttat actttttcat cgcaattaga taattgtgtg aaagaacaat
     2341 gccaaacatt attggaaaat tgcgatggaa attggagtaa atttaccgaa gcaaataatt
     2401 tcaaaactaa gaaactggat tttagttgga gacaggaaga taacttatta aaaattgagt
     2461 tagaaataga atcacctaaa caaaaaggat tgatttatac ggcagtacgt tatgttttta
     2521 tcttaaataa tacgaggtaa aagtgaataa atataaaaat gccagtgcat tattggtttc
     2581 attaatactt atttctacaa ttttgtcggt tttattttta agtaaagaaa aatggcttgg
     2641 acaacaaaac attacccatt tttatagaga gaaatacctt tccgatcaat ataatttttt
     2701 agcgttatat ccacaagata aaacgcaaat atgccaaaaa tttcaaaaag agcagatcag
     2761 ccaagcggat ttatccgata aacaattcag gtttttacag tatcaatttg cctgccaatt
     2821 ccatagttta tttaaagata aaaaaccgac taaagagaaa tatattcact ttacccattt
     2881 ggcggattat ttagatttat caaatgtgcc aaaccaagag atttatacta ttcattcttt
     2941 agctgaatta cctagtagca gtgaacgtga gcctaaaatt gtgcttgcta aaaacgcaat
     3001 taatgaaaac ttaccgcaag agttttacgg cattgtgata accgactatc tgtttgatat
     3061 taccggcaaa aaaatgtacg gcacgcttta ttcctcttat gataatgccc gagaggagcg
     3121 aaatttaacg tttaaaaaag aggtactggc agagcttgag gcgaggtatt ccgcttggcg
     3181 atatttgcca tattccgaac atttgatggg agcggttgat gattaaatat aaagcagaaa
     3241 cggctttgtc gcttttggtt gccatcacgc tatttgcgat tgtggtgttg agtttcagcc
     3301 agtggcaatc ggcacaaaac cacaggctaa atcaacattt ccaacagcaa caagcggtta
     3361 tgattttaga aaatcagctt gccctcaaat tagccgggtt agattgtgaa tcaagtatta
     3421 ctcaaaatca gattcgctat cagattcaat gctctggcaa tcgcttaacc attcgctttc
     3481 cgttaggcaa aattgagctg aataatgatt gaatcgtccc tcgctttgga ggacaataat
     3541 tcaattagcg aggcgttatt atgtttacac tttaccaatc caaccaaatt tcatcactgg
     3601 cggagatgct ggtgaaaatc cagcaggtaa acccacttga agatccgttt gagccggaaa
     3661 ccattttgat ccaaagtcag ggaatggcac agtggctaca aatgcagatt gctgaattaa
     3721 acggtgtgat ggggaattgc gattttctct accctactac atttttatgg caacagtatc
     3781 ggctgttgtt cccggagctg ccgaaagaga atatttttga gcgtagttcg ttggtttggc
     3841 ggattatgcg gttattgccg agttgcttga cactatcgga gtttgctccg ctaaagcgtt
     3901 atttaggtga tcaacctaat aaagaacagt atcagcttaa gctctatcaa ctttctgcca
     3961 aaattgccga attgttcgac caatatttgg tgtatcgccc ccattggctg gttagctggg
     4021 aagagggcaa cttacaagcg atcgaaaatg agataaaaat tgcaactgcc gctaagccga
     4081 ttgattttga cttaattcga gccgatatga aatggcaaag ccatttatgg caacagattg
     4141 tatctgatct gcaatcggaa tctgatgagc aggtttttac tacctcccac cgtgcctatt
     4201 tgcaacaaaa ttacttcgct aagttagatg accttactga aacggaaaaa gccaaattgc
     4261 caaaacgcat tttcattttt gggatttcgt ccttctcgcc attacagtta gcggtgttta
     4321 agaaactcag cgagcattgc gatattcacc tgttcttttt taacccaagc gaaaaatatt
     4381 ggggcgacag tgtggaagaa aaagtgtggc aaaaattggc gttaagccac aagatttcgc
     4441 aagacgatct ggataactta ttggcggagc aaagaaataa actactgaat ctttggggca
     4501 aacaagggcg ggatttctta gctcaattaa tcgaatttga gccgaatacc atggatgtct
     4561 ttgtcgaacc agaggaaaac agcaacctca ataaactcaa aaaacagatt ttcagcttag
     4621 aaaatgacgc cactattacc gatttaaccg ccgataattc actccaaatt cattcgtgcc
     4681 acagcccaat gcgggaagtg gaagtgttgc ataaccagct cctgaatttg tttgagcaag
     4741 atagcacttt gctgccgaaa gatattattg tgatgtcgcc ggatattaat aaatacgctc
     4801 cttacattga tgcggtgttt tctcgctaca atacgggtaa tcgggatcct cgctatattc
     4861 ctttttcatt atccgaccaa gcatttacgc aggttgatcc gattatccac agtttcctgc
     4921 aactgctggc aatgaaagaa agcccgttta atgccgaaga actgtttgat ttactggaag
     4981 tgaatgcgat ccaaacccgt tttggcttta gtacggaaga tattcatacc ctgcgggttt
     5041 gggtgagaaa tgccggcgta cgttcgggtg tagaaatcga gcaacctcac tggcaaaact
     5101 acaattcgtg ggaaaacggg ctaaaccgtt tattgcttgg ctcaagcctg aaagaagagc
     5161 aggggatttg ggaaaacacc cttgcctttg gggatagcta tggcttaaat gccgagctgg
     5221 tggggcgact tgcctctttt attgaggctt tattagcgtg ggtaaacttt ctgcaaacgc
     5281 cacagccgtt ggcagcgtgg cagcaggcaa taaaaaattt gactgctgat ctgtatcaag
     5341 aaaatgccga aaatgctgca tcaattttat tgttgaataa tgtgaatgat cagattatcg
     5401 agcaaatttc cgcaacccat ttttcagacg atctgcaaat tgaggtttta gccttattgt
     5461 ttgagcagca gctcagccaa cattcacagc agcttaattt cttggtcgga cgggtgaatt
     5521 ttgccacctt gcttccgatg cgggcgattc cgtttaaggt aatttgcttg ctgggtatga
     5581 atgaggcaga tttccctcgc caacaacaaa tcaatagctt tgatttaatg cagtacgccc
     5641 cgaaaaaggg agaccgtgcc aaacgtgatg atgaccgcta cttgttctta gaagccttac
     5701 tttccgctca gcaaatgttt tacatcagct atatcgggca gtcgcaaaaa gacggcaaag
     5761 agatgctacc gtcgattttg gtttcccaac tgttagatgc aatgaatgaa gctttaacgc
     5821 ctgaatgcaa gcaacaatta agcgatgaag tggaagtttt ggtcagaaaa caacctttaa
     5881 gtgtgtttag caaaaagaat tttacccacc cacgagatca cgcttataac gcagagtgga
     5941 ttatcaagcc gactgttgcc gtacaagatt ttcttagtga gcctttaacc aatgaaagcg
     6001 tggcttcgct agaacttgat gaattaatct cttttgtaca aaacccgatt aggtttttct
     6061 ttctaaaagt gttggggatt tcgtttaaca cttatgatga caccattgat gaaagcgaaa
     6121 tttttgagat gtcggggctg gataactacc ggattttaaa cgaattatta acgataaatt
     6181 tagcacaaca gcaacgtttt tttgccgaag agcaactcaa aggcaattta cctgcttctt
     6241 attttgctca aattgccaca caagatttga tcggcaaaat taccgaaatg caagcggcgt
     6301 taagccacta tttagccagc gaaagccgta ttttgagtgt taatcgggag gttgagctgg
     6361 aacgccaaac cctcacccta aacggcaata ttgccaacct atatcagaat gaagtggtgc
     6421 tatggcgagt agggcattta cgagataaag acaagattca gacttggatc taccatttat
     6481 tattgtgtgc ctatttccct gaaaaaacgg tgaaattcta ttaccgagag ggtgagcaag
     6541 ttggtgtgtt gagctttgaa accgtctcgc agatagaggc attatcgcaa ttaagcattt
     6601 atttgaatgc ttatttggac ggattatcgc aagcccagtt agtgatctac gaccgaattg
     6661 aggaatatct caaaggtgat ggcacaaaca gcgaacaagt tcttatcgat ttagcagaga
     6721 aagatgagcg agacggcagc tatctccatc ggcttctcgc tcaaactaaa gagctggatt
     6781 ctcaagcgat tcaccaacgt actcaaagct ggtttagctt aatgaatcag aaaatagcga
     6841 aaggcgatta actacaagcg gtcgtttttg gctgaaaatt tgcaaaatga gaaggcgaat
     6901 aataattcgc ctacctataa aaatagaatt ttttccgtat tttactgtca atttattact
     6961 acaatgctaa tttcaaaagg agatgtatga aattatcttt tcttacccaa ttcgttgcag
     7021 cggcttttgc cctcaatgtg atgacttacc ctgcatttgc ggaagttgca aaaaattctg
     7081 aaaaaacgac cgctagtcaa ccccaatccc aactcggttt tgagctgatt aaacagagca
     7141 ttaacaaaag cccgaatgat aaagcgattt atcaaggtat taaacttgat aatggaatgg
     7201 aagtgctact gatttccgac agtcaagcga ataaatcgtt gatgtctgcc attattccga
     7261 ttggctcaat ggatgacccg atttctcagc aaggtttagc ccactatctt gagcatatga
     7321 tcttgatggg ctcgaaaaac tatccggaaa ccaacagctt agacggtttt ttaaccaaaa
     7381 atggcggtat gaataatgcc tcgactgctt ctcaccgcac ggcgtattat ctacaagtca
     7441 ataacgaagc ctttagcgaa gcggtaacac gactggcgga tacgttagct ttcccgttat
     7501 tgctggaaac caacgccaag aaagaggtta atgcggtcaa tgcggagatg gtgcgagcta
     7561 aatcgcacga tgggcattta ttgcacagtg ttaatttagc caccgcaaac ccggctcatc
     7621 ctgctaccaa atttgcggta ggcaataaag agacgttatc tgacaagccg gatagcaaat
     7681 tacaaaccga gttggagcaa ttttataaac agcattattc tgcgaatctg tttaaagtgg
     7741 tgctttattc caatcaatcg attgagcaga tggcaaaatt ggcagccaac actttaggca
     7801 aaatggaaaa caaacatttc agcataccgc aaaccgctga gccacgttat cgtgatgagg
     7861 acaaatcggt atttattcaa tataagccgg tgaaatccaa caaaatgtta gtcattggct
     7921 ttgattttcc gaatgacgaa atgcagttta agcacaaaac cggtaaatat attgcttata
     7981 tgttaaacaa taatactgac ggcacgcttt cggattactt gattaaacag gggttgtctg
     8041 acggcggtat tgaggcggtt agcagtgcca atatcgggcg ggatcgaggc tcgtttgaca
     8101 tctatattga actgacagac aaaggtttga gcgagcaaga tcaaattatt tcattggttt
     8161 tccaacaaat tgagaagatc aaacaagaag gcattcaaga gagctatttt agcgaagtga
     8221 aagagagcct gaagcaggat ttccaacatt tgcaagtgga aaaaaatatg gatttcgtgg
     8281 aatttattgc cgatcaaatg ctccatttcc cgttagaaca cgttatcgat cagccttatc
     8341 tgaccgaaac aatggataac gaggcaatta aagcaaaatt ggcggcaatg aatattgata
     8401 atgcccgcat tatgttagtc agcgatactg ccaaaaccga caagaaaacc ccttattttg
     8461 aagcaggtta ttcggtggca aaaatcacgc aagaacaaaa gcaaaaatgg ctggatttca
     8521 gtaaaaatcc acagctcaat ttgcctgaat tgaacccgta tttcactacc gattttacct
     8581 taaacaaggt cgaaaccggc ttaactaaac cgaaattgat taacgaccaa gcggggaatt
     8641 taatctatac aatgccgagc gtgtatttta ccaatgaacc gaaggctaaa atcggcgttg
     8701 gctttaatat tcgcccgaga aaagatgact taaagagcct gaccgcagcg tctattttgg
     8761 gttatatgaa caatttagcc caaaccaagt tagattttca gtcttcggtg gcgggtatga
     8821 atttaagttt agctccggcg gcaaacggtt tagccttaag tgcagagggt tatacccaaa
     8881 atctggctaa attaatgcta gacagcgtaa aacagttcag ccgctttgag tttaacgaag
     8941 acgtgttggc acaggctaaa caacgtttgc accaagagct ggatcgtaac gaaaaagaaa
     9001 acagccttaa tcaagctaat gcagcattaa gccgttttgc ctcttaccct tattttgatg
     9061 tgccgaaaca gcgtgagatg attgatagca ttacccttgc ggatattgag caactacgcc
     9121 agcgaatttt gcagcagagc agcggcttta agttgttatc ggtggggaat ttgtcggctg
     9181 agcaggtttc tgctctggca gaggatttac aagcggtcat aaaaaaccaa aaatctgcaa
     9241 atgctaccgg acagtatgtg gatgtgagta ccagtcagcg taagattaat gtgattaaaa
     9301 gcgtgccgaa tgaagataat gcgttgctaa tggcatttat gccgaacggc tataacgagc
     9361 tggaaagcct tactcgagcc aaattgctca gaagcattat ttcccgttgg tattttgatg
     9421 atttgcgtac tgataagcaa ctaggctatg tggtttatgc gacagataat atcatcggga
     9481 aaaccgccgg tatccagttt atggtacaaa gcccgaatac cacaccggca gggattttag
     9541 agcataacga acgtttcttt acacaaagtt tcgaacgttt aaaaaatcta tctgatgagg
     9601 aatttggaaa atatcgtgat agcctagtgg aaaaactgca atataaaccg gagtctttag
     9661 cggaagagtt ttctgagttc ggttcagact ttagcagaaa taacccgaaa tttgaccgct
     9721 tgcaacaggt gatcgaatta accaaagcac tcaccaaagc agatattgtg gcattttacc
     9781 aaaaagctgt gattgaaaag caaggcttcg tgtttgtcag ccaagctgtc ggcaccaaaa
     9841 ccaaagctga agacgttgcg aaatttgacg gttttgaaca gatcgaaagc attgaaaagc
     9901 tacaacgaga gtttgagatt aaggattatt agagagttat tagagagagt taggggcgaa
     9961 aaattttcgc ccctcatttt ttaatccaca attttcaccg gatataagta agtatatccg
    10021 aacggacttt gtttgtagcc ttcaacacgt ttgctggttg gggcaaagtt aattgagtga
    10081 gccacgttaa tccacggagc ttgctctctt aagataacct gtgcctgctc gtataactta
    10141 gtacgttctg ctttatcaga tgagcctaat gctttttcta ataacgcatc taactcaggg
    10201 ttagtaaagc gagcatagtt actgttgccg atatttggcg tgccgaatag tggcgataag
    10261 aagttatccg gatcgccgtt atcgcccgac caaccgtaag ttccggcggt taattcaccg
    10321 gctttggtac gcttgatgta atcaccccat tcataggtga ctaattttgc ttttacgccg
    10381 attttttccc agtcggcttg aataatttca gacatacggc gtgggttcgg gttagaagca
    10441 cgcaccacag gctgcaccca taattcggtt tcaaaaccgt tcgggaagcc tgcttcagct
    10501 aatagttgct tcgctttttc cacgttatat tctgaatccg ctaagctgtc gttatagccc
    10561 caaatggttg gcggaagtgg gtttttcgcc gcaaaaccgt taccttggta aactacatca
    10621 ataatcgctt ttttatccac tgctaagttt aacgcttggc gaactttcac gttatcaaac
    10681 ggagcttttt cggtattgaa tgccacataa gcaatgttca aacccggttg agaaagtaaa
    10741 ttgattttcg gatcattttt cattttctca atgtcggttg catttgggaa gtccattaaa
    10801 tcacattgac cggattgtaa tttcgcataa cgggttgttg catccggcac gatctcaaaa
    10861 atcaaacggt caatgtcagg cttacctttc caatactctt tgtttgctac ataacgactg
    10921 gcttggtcta gcacataacc gctaaacaca aacggacctg tgccgattgg cgtggtatct
    10981 accgcttcag gtatgccggc tttcatcatt ttatccgcat attccgccga ataaatggag
    11041 gtgaaatcca taccaaggct ggataagaat gacgcatcac gtttggttaa ggtaatacga
    11101 acggtgctgt cgtccacttt ttccaccgat ttcaataatg tcgggaattt cattgcgttg
    11161 aaatacggat aagtgccgtt agagacggtg tgatacggat gatttttatc taactgacgg
    11221 ttaaatgaaa atactacatc gtccgcattc aattcacggc ttggagtgaa gtctttgttt
    11281 gaatggaatt tcacgccttt gcgtaattta aaggtgtaag ttaagccgtc ttcgctgatt
    11341 tcccagcttt ctgccaatgc cggttcaata tcggttgtac ccggcacaaa ttccaccaag
    11401 cggttgtaaa tttgttgcga gctggcgtta taagataaac cgtccatcat taaaatcggg
    11461 ctaaaaccgg ttggcgaacg gctaacgcag tttacaaagg ttttctcggt ttgcggtttt
    11521 gctgctgccg cagtaggttt attttcgttg cttttatcat cgcaagccgc tagagctaat
    11581 accgctaaaa cgcttgcact aattttggtt aacgttggaa atttcatatt attctccgct
    11641 taatcttagg attaacttac gaagattacc ttttccacaa tgaggagtaa agaacaaaaa
    11701 gcattatttt tgcaaatcaa tccatagaat tagataccgt caacgtcatt gccacccgtg
    11761 atccaagtaa atttgccgat acgccacaaa aacaaactaa agatgcactt ttggtaaaac
    11821 aagcgacgag tgtggcggcg gcattaaaag cgttgccgaa tgtggatgtg caaggagggg
    11881 cccgtgcgat tgtgcagaag ccgtctattc gtgggttgag cgataatcgt attgtgcagg
    11941 tgattgacgg agtgcgtcag aattttgatt tggctcaccg tggttcttat tttgtgccga
    12001 tgtcattgat tcaagaaatt gaagtaatca aaggtccaag cagctcgttg tgggggagcg
    12061 gtgccttagg tggggtggtg gcaatgcgca caccgaatgc gttggattta ttgaaaaata
    12121 atgacaaatt cggggcaaaa atccgtcaag gttatcaaac ggcgaataat ctttccgaaa
    12181 ccgaagcctc ggtgtttgca gcaaatgatc ggtttgatgc cctgctgagt ggtttctaca
    12241 ataatgctga caatttgcgt agcggtgaag gcaaggaact gaataacacg ggctataagc
    12301 aagccggcgg tttagtaaaa ttcggctggc aaattaacga tactcatcgt ttggaattat
    12361 cccatcgtca tagccaattt aaacaaactg caccgggtaa taacgaggta gaaaatcaat
    12421 ttaccgataa tgatgttagt gcacaaatta gtgcttggca tgcggctaat cctggaaatc
    12481 caagtaatcc agtatatctt gcgaaaatgt tagcctttta cggtcaatta cattcaagtc
    12541 ttggtagtgt gagttattta agtgatcaaa aaattaccga taaaagcacc tcacttaact
    12601 actatttcaa cccaagcaat ccttatttga gcacacaagt gacattatat agcaatagta
    12661 ccactgaaaa cgaacatcga aaaataagtg gtgtggaaga tcaaactaaa ctaagcactc
    12721 gtggtgtgaa tatccgtaat cattccgaat tgtcttggtt ctccttggtg tatggcgtgg
    12781 attatatgtt ggataaagta gccactcagc gtgggagaaa taatacggac gcacaatacc
    12841 gtgctaatcc ttatgatgct aaatctaaaa ctacaggtgc ttatttaatt gcacatattc
    12901 cgctgtttga tgaaaaagtg gtcttttctc cgagcgtgcg ttacgaccgt ttcgatactt
    12961 caagtgaaac ggtgaaatat aaagacagcc attggtctcc tgctgcaaaa cttacttgga
    13021 aagcgacaaa ttggttggat ttaaccgcga aatataacga agctttcaga gccccttcta
    13081 tgcaagaacg atttgtgagc gggtctcatt ttggtaccac agtgagagga ttacctatta
    13141 ataatatttt cttaactaac cctaatttac gcccggaaac ggcaaaaaat aaggaagtaa
    13201 ccttcaatgt acattttgat aatgtcatct cgcaaggaga taaatttaac tttgaagcga
    13261 cttatttccg taatgatgtg aaggatttga ttaatcttca agtattcaaa gcaaatccta
    13321 caagcccaat ggaatttatt cccactcgtt cccaatatca aaatattgcg aatgcacgtt
    13381 tgagtggtat tgaattacaa actcgttatc aaactgaacg tttggcagtt tttgctaact
    13441 acggtagtac aaaaggtaaa gataaagaca gcggggaagc cttgtcgaac attgctgcaa
    13501 gcaaaatcgg cttcggggtc aattatgccg tggtgcaaga caaattcacg gtgggggcaa
    13561 acgtaacccg ttatcaagca caacatcgtg tgccgaaaaa ccacggcgtg acttaccaag
    13621 gctatacgct gaccgatcta cacgccactt acgccccatt aaaaggcgaa tggaaaaacc
    13681 tgcgtttaga cgtggcggtt gaaaacctat tcgataaaaa ataccaaccg gcattcagct
    13741 taatggaagg cagcggtcgt aatgtgaaac tcagtgcggc ttacagcttc taatgtcttt
    13801 aacggaagac ggcacaagcg gtcgttttcc ggttattttt tgcaatatta aaagggagtt
    13861 actatgaaat tttatccgtc gctgatcgca agtgcggtca gttttgccgt tgttttgagt
    13921 ggacaagcgg cagtgaatgt gccggatgcc ggctcgttac agcgtgaatt agaccaacgt
    13981 caagctcaac aaaaagtcaa accgagtggc gaatggttta atcaagcggc aaaagcacct
    14041 tataccgcaa cggacggtca agaactgaca tttccattaa ctcaggtaca agtttttgat
    14101 cgaaccaacc aagaaatctc taccccggaa ttagccccga ttttggcaaa ctatgtgggt
    14161 aaagcggttt cgctgaccga tttaagcaac ttggcaaatg agatcaccga gttttatcgt
    14221 agccacaatt atctggtggc aaaagccatt ttaccgccac aggaaattga acaaggtaag
    14281 gtgaaaatcc tgttgtttaa aggcaatgtc ggtgaagtgc ggttacaaaa tcagagtgct
    14341 ttaagcgata aatttgttgc acgccttgcc aacaccacag tgaatggttc ggaatttatc
    14401 ctaaaagacg aattggaaaa atttgccctc acgatgaatg atgttcccgg ggtgaatacc
    14461 ggcttggagc tttctgccgg taagcaagca ggcgaggcga atttgctgat taagctccaa
    14521 aatgccgagc gtttctcagg ctatgtatcg gcagataacc aaggcaataa aaataccgga
    14581 cgttaccgtt tagccacagg gataaaagcc aataatctga taggttgggg cgatgagttg
    14641 aaagtggatt tgatgagttc caacaacgct aatttaaaaa atgcgcgttt ggattattcg
    14701 agcttgattg acggctacgc tacccgtttg ggcttaacgg cgaattatct cgactacgaa
    14761 ttaggcggta actttaaagc cctgcaatcc caagggcata ctcacaatct tggggcttat
    14821 gtgttgcacc cgacaatccg cttgccggat tttcggttaa acaccaaagt cagctttaat
    14881 catcaacgtt taaccgacaa acaacaagcg gtcaatgtgg cacaaaaacg ccaagtaaac
    14941 agcttaacgg tgggcattaa cgggtcgtgg aattcgctta aagacggcac aagctatttc
    15001 tctctgtctg ccttgttcgg caatttagct aaccacacca acgagcaagc gcattatgtg
    15061 gcaacagatt ttcagcccaa atcccgtttt acggtctatc aatacagcct gtctcacgaa
    15121 caagcgctgc caaaatcctt tgccttcaac cttggcgtga acgggcagtt tgcggataaa
    15181 accctcgaca gctcacaaaa aatgttactg ggcggtttat acggcgtgcg tggtcatcaa
    15241 gccggtgtcg cttcggtgga tgaggggcat ttagtgcaaa ccgaactcaa gcattattta
    15301 ccgctctttt ccaaaagcct gctgaccagc tcggtcttct atgattatgg ttggggaaaa
    15361 tactataaac acagcggatt tttggcgcgt ggtgtaaaca atagcgtgaa attacagagt
    15421 atcggagcag ggctttcgct ctctgaagca ggcagttatg ccattaacgc cagtgttgcc
    15481 aaaccgctgg gtaaaaaaat cgagaatgca gataaacacc aattctggtt ctccgccatc
    15541 aaaaccttct aaggagacaa actatgttta aacgtaatgc aatttctctc tgcattttga
    15601 ccgcttgcag cggtttagcc tatgccaata cagcagattt gccgcaaggt gaaagggtgc
    15661 gtgtcgggac ggcaacgatt gagcgcacaa ccgataaaat gaccgtgaat caatccagca
    15721 ataaagtaca aattgattgg aacagctttg atattggtaa gaataaagaa gtggaattca
    15781 aacagccgac agagatggcg gtggcatata accgtgttac cggcggaaac gccagtcaaa
    15841 ttcaaggcaa gctgaccgca aacggcaaag tgtatttagc caacccgaac ggtgtactca
    15901 tcaccaaaga tgcggaagtg aatgtgggcg gtttgttagt gaccacaaaa gatttagaaa
    15961 aaatcagcga aaacggcaca aaagataaat tcagtcgcaa attagcgaaa gaaggcaaaa
    16021 ttcttaacca aggtaaaatt acggccaaag gcgagcgggc ttttgtggta ttggtgggcg
    16081 acgatgtggc taatgaaggg gaaattaacg ccaaaaatta ttaccacaaa gaaacgaaaa
    16141 aagtcaccga atgttatgac gattcttgga gcttggtaaa acaatgctac gattttgata
    16201 aagaaatcgt gaaaagtacc agtggagaag tgcatttatc ctccggagaa aatgtcacct
    16261 ttactttaag cgaccgctat attgatgtgg cgttagacga taatacggtc aatagcatta
    16321 tcaaaaatga cggggcaatc atcgccaatg gtgacattac cctcactgcc aaagggcgaa
    16381 atcaagcctt agacagctta attatcaata acggcgtatt gcaagccaat aaggtgcaaa
    16441 ataaaaacgg tacgatcatt ttatctgccg gtgaaaccca attacacgaa aaaagccaaa
    16501 ttaaaggcga gaaagtgagc tttgccgaag cttcttatta cggtccgaca gaagacatta
    16561 aagtggtttc caaaaccggc tcaaaagtga ccgcacctgt gatcgatttc aaaggtaaaa
    16621 ccgtgaatat tcaaggggaa tttgggcgtg aagacagcac cgatctctat aacgatgaac
    16681 tacaaatcct caaaaccacg gtgaatattg aagtcccgaa tacggaagat attcgcattg
    16741 cagataccga caacggaggt agcggttcct ttatacaagc gggtgcttta gcctcattac
    16801 ttgcaaataa cggacgggtt aatgtacagg gcaaaggttt tgatgtctca ggcaagttga
    16861 atgtgaatgc ctttaaacaa acggattccg tgctgaaatt tatcaatcag gcgggcatca
    16921 atatccacaa tgccgatatt cacgcaaacg ggcgtttatt ctttgtgaca aacttgccga
    16981 atgacaccga tttccaatcg aatatccgca ttaccgacag caaaatcaac ttaggcaacg
    17041 gctcaatggg ctttggtcgc agtagcaaac gttgggaaat gcacgatgtg gttcgacgtg
    17101 ccgatacgga actgcgtaaa aaattcaatc tggatatgaa aaacgtggaa ttaaaccaag
    17161 tggatgattt tgtggtagcg ggcggtttcc aacaagttaa tttggataac gtgaaagccc
    17221 gtggcaaaac caacttctat ctggattccg gcaactcccg catgtttgtc ggtgagcaga
    17281 tttatgaata tggcgtaacc gatattgaaa aacgcaccca attggcgaat ttagaccagc
    17341 gtagaaaacg ttggaattcg gataactatg atgagaccga tctcaactgg gaatacaacc
    17401 aacgctttga cggctttgca gcaaaacaca atcaccgcgc gccgattgcc gatacggaaa
    17461 tcaatattgc caatagtgat atcagcttag ataacggttt tgtgcattta atggcagaaa
    17521 aaatcaatct ggacgacagc aaaatcaata tcaccttcaa ccaagacaac agcttggatg
    17581 aaagtaccca aatcaaccgc ttaggactaa acggcaaagt gtcgatgaaa aacagccata
    17641 ttaacgtagt gggcgatgaa aaagacggta tctcaccggc tcgccattat gccacgatgt
    17701 tcttagtggg ggagctgctt ggtgaaaaga gttctatttt cctcaaatcc caccaaggtg
    17761 cagtattgag aaccgacagc aatgttacaa ttgccggtaa aaacagcaaa gacgacctca
    17821 aaattaccgc cattaccacc ggtaaaaaaa tgggcaatga aatcatcgga ccggacggct
    17881 tgccaacctc ggaagataac gatgccaacg ccagcaacac cgcctttgcc atcggctatg
    17941 aacctaacgc tacggctatc gtcgaaaatg caagcattac cgcattagca ccaaacggcg
    18001 gcttggcata caccggcacg tctaaaaccc aaattgacgc gaaggataat gctaccttta
    18061 ccttctttga aaaacctcga gccggctatg acaaattgct tggcgacatc aaaggtaacc
    18121 ccgataaatt aaccccacgc gatttcgccc gtttatacga caacattaaa ggcatcaaag
    18181 ccagcagcct atccgaacaa cagcttggcc tagcagacac cgcgaagaaa accagcgaac
    18241 acaccttagc aaacagccta gacgtagaaa atttggtttc agtgacagtg tgtgatgagc
    18301 agaataagtg tgaggagcgt atgttaggta acaaaaatac caatgctaaa gttattgtcg
    18361 gagatatcaa atttgagtag cgttgaagaa agtggtagaa gctcagactt gatctgataa
    18421 agcactataa aaagtgagag tttcccgttt agaatatgag tgtcaaaatt caatctaaac
    18481 aaaaaggaaa ctctcatgtt ttattactta caatcccctc attaaacaca agaccggttt
    18541 attaaattta gcagaagaac cgggcaatat ctctcaagcc tgcaatgtgg tgggtatgag
    18601 cctagataca ttctattgct atcaacaagc ggttattttt ggcaactaat ttgcaaaaaa
    18661 acaataaaat ccgaccgctt gtagagggtt aatccgccct tagtgaaatt tcaccgatgc
    18721 cgaaatagcg gaggttgtcg ccctgtttta gaatgagttc gccctgctcg ttaatgcctt
    18781 gcgaaatgcc gtggatttct tcggcttcgg taatgagctt aaccgcttta tggcggaaaa
    18841 ggtcgaaact ttgccagcgt tcggcataat gagcgaagcc gacaagcgga taaattttga
    18901 gatttttttg caattcatag gctaaacggc aaaccaattc gttgcggttg aaatgatatt
    18961 gcgataaatc tgcccacgct tgcgtcacaa tattttcatc cacttttgcc attcctaggt
    19021 tcagcccaat gccgataacc acatctaaac cattgcgatt ggcttgggtt tccaacaaaa
    19081 tgccccccat ttttttgcct tggtaataaa tgtcattcgg ccatttaatt tgaatatctt
    19141 ttacattttg aacagtaagg ctttccgcaa tgatcaaggc taccactaaa cttaagggcg
    19201 gtaaatctgc cgcctgctcc atcgggtaat gccataaaat cgagaaatag agattttcac
    19261 tctcgggcga ataccaagtt cgacctcgtc tgccacgtcc ggcagtttgt ttttcagcga
    19321 ggcaaaccgt gccgttttcc aaacgttggt gatgagtgag caaatattca ttggttgaat
    19381 caatttcatc gaacacaacg gcttgcccgc aaattaaagc attttggatt tgagcttggt
    19441 taagtttcat tatttcccca cttagcgagt gattttttcg ctatcgacct caccgttttt
    19501 accgataaaa cgcacttcag gctgaatttc taccccaaat ttttctttca ctctctggcg
    19561 aacggttttg gctagagcca agacatcttg ccctgttgca ttttctttat taatcagcac
    19621 taaggcttgc tgggtatgta ccgccgctcc gccaatttgt aagtctttca gcccggtttg
    19681 gtcaattaac caacctgcgg ctaattttac cgttccatca gcttgagggt agtgaggaat
    19741 ggctgggaat ttggcttgta ttggtgcaaa ttgttcgttt gaaatcaccg gatttttaaa
    19801 aaagctgccg gcattgccaa attcgtcagg gtttggcaat ttggaggagc gaaccgcaca
    19861 gacttcatca aaaatctgta ttggcgtaac ggtttccgga ttgagttggg ctaatgatcc
    19921 gtaacttagc accggtttcc acgctttggc taactttaag cctaccgaga taatcgcaaa
    19981 ttcatcacgg tattggtgtt taaacacact ttcacgatag ccaaattcgc actcggattt
    20041 ggatagctta aagagttctc cggaacgtaa atttaacact tccacgaaat cacatacctg
    20101 ttcaaattca accccataag ctcctatatt ttgaatggga gcagagctgg cgacacccgg
    20161 aattaacgcc agattttcaa tgccggcaat attgtgtgcc aacgtccatt taaccaattc
    20221 gtgccagttt tccccacctt gaacgtgcaa atagtggaaa tgttcgtctt cgtggtgcgt
    20281 aatccctttg agtttattta ctaacaccac accgtcaaaa tcctctaaaa acaaaacgtt
    20341 agagccttgc ccgagaatca agattggcag ttgagcgtta aaggcttttt gccattcgct
    20401 caatagctgt tcgactgtgg taaattcaat aatttgggtc gcttttgcag gcaaatggaa
    20461 agtgtgaaaa ggggttaagc tatgtttcat catcaaatta gttagttaag aagtggaaat
    20521 aacaagcggt gatattttta caaaattttg caattaagat tttgggcagg cacaggatct
    20581 gcccctacat tcagaattac cttgccccat ataccacaat ggttttgccg tgagcagaaa
    20641 ttaagccttc gtcttccaac atttttataa tgcgtccaac ggtttcacgg gaacaaccga
    20701 ccatttgccc gatttcttgg cgggtaattt tgatctgcat accttccggg tgagtcattg
    20761 catccggcat tttagctaag ttgagcaagg tttgagcaat gcgaccggca acgtctaaaa
    20821 aggcaagatt accgacttgg cgtgaagttt gacgtaaacg gcgagccatt tgtgccgata
    20881 aatacattaa aatatcgggg tttaaatgga ctagttgttt gaatttttta taggaaattt
    20941 ccgcaatttc acaaggacct ttagtgcgga cgtaagcggt acgttgttgg actttttctt
    21001 caaataaact taattcaccg acaaactcac ctgtgcctaa gttagttaag agcatctctt
    21061 tggtttcatc atctttgatg taaaccgaca ctgagccatt cacgatgtag aaaagtgatt
    21121 ctgcatcttc accggcgtga atgagtgtat atttcgccgg ataacgatgg atatgacaat
    21181 gggttaaaaa ccactccacc gcagggtcgt gaatagaggg cggaggagtt acattttcca
    21241 gaggagctgt tgaaagtgtc atatcttgca tagtatttcc tataactctt atactaggtt
    21301 aaatttttag aattttaaca cgaaattaaa ggttagccta aaaaagattt tttgtcttta
    21361 atatcaaggc tttcgtgtaa ttccgaccaa acaatcacca ctttatctgc cttaagttgt
    21421 gtgagtaatc gttctctttt ttctgccaga gaaagttccc tttccccgta gtctgtgcct
    21481 tctcgtaaaa tgaaggaatc taaaatatta tgtaaggttg attcttcgag ttcttgccaa
    21541 ggtataatca taattaatca aataaaggct taataaatgc ccactgtttt tcaaaatgtt
    21601 ggtgttggtt atagctgaaa ttagaacgaa ccaagcgtaa aaattgccct tcgcagaaat
    21661 tcactaaata accggctaag gctctttcgt cttcaaagct cttgcgttca cgcagtttac
    21721 taagttgcaa aatattggca aattgtaact ccaagttatc aaagaatttt gccactcgag
    21781 ctttgagcaa ctcctcttca aacatcaagg cgtgtccggt caggatgcgg gtaacgcccg
    21841 ggtttttgcg agcaaattct aaaatcacat ataaaattgc tcgcaccgaa ttggcactgc
    21901 tgtcttggcg tttattggcg tgaatatagc tggtgagggt ctgctcgatt ttctcgatta
    21961 acgcttcaaa catcttggtt ttacttggga aatagcgata caacgccccc tccgacaccc
    22021 ccaccgcagc ggctaaacgc tcggtagtga tacgctgcat tccctcttca gaatttaaca
    22081 agctgattaa cacttccaac acttgttggc ggcgttccac cactgatttt ttcggcattt
    22141 taattttagg ttctgtcatt gccaatccta ttattgctta cctgaatgcc caaaaccgcc
    22201 ttcgccacgg tcggtctgct caaactcttg cacaatgtta aaacttgcct gaaccaccgg
    22261 cacaaagact aactgagcaa tacggtcgcc cacgttcacg gtaaaatcag cttggctacg
    22321 gttccaaagc gacactttca gctcgccttg gtaatcgcta tcgatcaagc cgactaagtt
    22381 gcctagcacg atcccgtttt tatgccctaa acctgatctt ggtaagatca ccgctgccaa
    22441 attcggatcg gcgatataaa ttgaaatccc cgttgggatc aacaccgttt cacccgcttt
    22501 taccgtcagc ggctcgttga gcatcgcccg tagatccaag cctgccgagc cttcggtcgc
    22561 atacgcaggt aatggaaatt cattgccgat acggctatct aaaattttta aatcaatttg
    22621 tttcattctt tttccttttt gtaaattttt aaaac
//
LOCUS       DANLXK010000026        22385 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.026, whole genome shotgun sequence.
ACCESSION   DANLXK010000026 DANLXK010000000
VERSION     DANLXK010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22385
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            40..717
                     /locus_tag="PXD88_000847"
     CDS             40..717
                     /locus_tag="PXD88_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6280441.1"
                     /translation="MNSIIRKEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEG
                     KRGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGF
                     GAFNSEVYAPDDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVV
                     YIGHEMI"
     gene            765..3617
                     /locus_tag="PXD88_000848"
     CDS             765..3617
                     /locus_tag="PXD88_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6280442.1"
                     /translation="MVQAVSFSHFFAIHYFYFFLHKTKGQCTAKPLFSILLFHLFPKN
                     SAKFLLFFYFLVLMVLYSNEVANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYD
                     KVANKEVLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQ
                     GTSQACIRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTG
                     SITAQESTKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVAN
                     GSQIHLNTPTATKQNTLTANTLTGNGIFKFVADLTKTASDIVTIKDTASGQFSIEIST
                     NGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKIT
                     QKGPSETADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNG
                     NAHLIASELTAQTNAVLGVTTVLDHVIHSEGTQKQNTLTANTLTGNGIFKFVADLTKT
                     ASDIVTIKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYH
                     LLKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTG
                     DIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAV
                     LGVTTALDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQV
                     TLGMILSQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQ
                     ANTVKLDRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDL
                     LALQAGLSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAG
                     ISANYRNINAGIQAGFLTGNTLNKQRYISFKVTYEW"
     gene            complement(3692..4528)
                     /locus_tag="PXD88_000849"
     CDS             complement(3692..4528)
                     /locus_tag="PXD88_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL6280443.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            4636..5511
                     /locus_tag="PXD88_000850"
     CDS             4636..5511
                     /locus_tag="PXD88_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6280444.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            5647..6087
                     /gene="nudB"
                     /locus_tag="PXD88_000851"
     CDS             5647..6087
                     /gene="nudB"
                     /locus_tag="PXD88_000851"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL6280445.1"
                     /translation="MNYKNPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGE
                     TPLEAAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLL
                     PLDSEQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            6100..6840
                     /locus_tag="PXD88_000852"
     CDS             6100..6840
                     /locus_tag="PXD88_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6280446.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            6970..7497
                     /locus_tag="PXD88_000853"
     CDS             6970..7497
                     /locus_tag="PXD88_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280447.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            7564..8142
                     /gene="ruvC"
                     /locus_tag="PXD88_000854"
     CDS             7564..8142
                     /gene="ruvC"
                     /locus_tag="PXD88_000854"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL6280448.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(8208..9488)
                     /gene="murA"
                     /locus_tag="PXD88_000855"
     CDS             complement(8208..9488)
                     /gene="murA"
                     /locus_tag="PXD88_000855"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL6280449.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(9598..9858)
                     /locus_tag="PXD88_000856"
     CDS             complement(9598..9858)
                     /locus_tag="PXD88_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL6280450.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(9891..10214)
                     /locus_tag="PXD88_000857"
     CDS             complement(9891..10214)
                     /locus_tag="PXD88_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL6280451.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(10226..10861)
                     /gene="mlaC"
                     /locus_tag="PXD88_000858"
     CDS             complement(10226..10861)
                     /gene="mlaC"
                     /locus_tag="PXD88_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL6280452.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(10907..11431)
                     /gene="mlaD"
                     /locus_tag="PXD88_000859"
     CDS             complement(10907..11431)
                     /gene="mlaD"
                     /locus_tag="PXD88_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL6280453.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(11452..12228)
                     /gene="mlaE"
                     /locus_tag="PXD88_000860"
     CDS             complement(11452..12228)
                     /gene="mlaE"
                     /locus_tag="PXD88_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL6280454.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(12221..13024)
                     /gene="mlaF"
                     /locus_tag="PXD88_000861"
     CDS             complement(12221..13024)
                     /gene="mlaF"
                     /locus_tag="PXD88_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL6280455.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            13249..14643
                     /locus_tag="PXD88_000862"
     CDS             13249..14643
                     /locus_tag="PXD88_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL6280456.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(14695..15456)
                     /locus_tag="PXD88_000863"
     CDS             complement(14695..15456)
                     /locus_tag="PXD88_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL6280457.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(15443..15895)
                     /gene="nrfF"
                     /locus_tag="PXD88_000864"
     CDS             complement(15443..15895)
                     /gene="nrfF"
                     /locus_tag="PXD88_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL6280458.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(15885..16418)
                     /locus_tag="PXD88_000865"
     CDS             complement(15885..16418)
                     /locus_tag="PXD88_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL6280459.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(16415..18319)
                     /gene="nrfE"
                     /locus_tag="PXD88_000866"
     CDS             complement(16415..18319)
                     /gene="nrfE"
                     /locus_tag="PXD88_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL6280460.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(18589..19536)
                     /gene="nrfD"
                     /locus_tag="PXD88_000867"
     CDS             complement(18589..19536)
                     /gene="nrfD"
                     /locus_tag="PXD88_000867"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL6280461.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(19536..20213)
                     /gene="nrfC"
                     /locus_tag="PXD88_000868"
     CDS             complement(19536..20213)
                     /gene="nrfC"
                     /locus_tag="PXD88_000868"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL6280462.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(20213..20869)
                     /gene="nrfB"
                     /locus_tag="PXD88_000869"
     CDS             complement(20213..20869)
                     /gene="nrfB"
                     /locus_tag="PXD88_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL6280463.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(20888..22363)
                     /gene="nrfA"
                     /locus_tag="PXD88_000870"
     CDS             complement(20888..22363)
                     /gene="nrfA"
                     /locus_tag="PXD88_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL6280464.1"
                     /translation="MATISILGCLQTALAEEAKTESLTDKAVKHEKLGVKIESANHLF
                     AEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGHFYAVTDVRD
                     ILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGAEIVNSIGCA
                     DCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCANCHVEYYFK
                     NKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEVWSQGTHGKN
                     GVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEKRVKEYKHEV
                     KEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSAAGHGNHFHA
                     PDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLAIGLDIPKEQ
                     AAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         6730 a         4841 c         4525 g         6289 t
ORIGIN      
        1 aaattttttt gaattccact tgaattcaaa aggggtttta tgaattctat aattagaaag
       61 gaatggttta cggcatctga agtagctgga atgggaaatt tacctgaaca accatcaaat
      121 gtaacaagaa gagctaccaa aaataattgg ctcaaaagac aaatagaggg aaaaaggggg
      181 gttgcttttg aataccacta cagctctctc ccaataagcg tgcagcaaga gttaggcttt
      241 gctcaaacgg cagtaaaaga agagcctaga acattagtgg cagcccaaac tgcagatgaa
      301 atggaacgtg tgccgtttta taatgtacag gcttcagcag gctttggtgc tttcaatagc
      361 gaggtgtatg cccctgatga ctatattggg ctaagtaaac gatggctaga tgtgcgtggc
      421 ttctatttga gctatcttgc atttattacc gcttcaggtg attcaatgta cccaaccatc
      481 agtgatggcg atatgctatt ggtaaaccga gccaccaccc agcctaaaga cggtaaaatt
      541 tatgtgttcc gccaaggcga gcagctttgg gttaaacgtg tgcaaggcat tatgggcggt
      601 attcgcttaa tcagcgataa taaagagcta tacagcccta ttgatgtgat ttttgatgaa
      661 acgttagatt ttgaggttat cgggcaggtt gtgtacattg gacacgagat gatttaaacg
      721 ccatttaaag ctacttaaat catttttact ttttcgttgt tttaatggta caagcggtta
      781 gttttagcca ttttttcgca attcattatt tttacttttt tctacataaa acaaaggggc
      841 aatgcaccgc aaagcccctg ttttcaatac ttctgtttca cttattcccg aaaaattccg
      901 ccaaattcct attattcttt tatttcttag ttttaatggt tctatacagt aatgaagtag
      961 caaacggcaa attgcttatc actgggggaa cgaacctcaa cggtacgctt tctgcagaag
     1021 gtacaagcga aatcatttta tcgggccgtc caacacctca tgcctatgat aaagtagcga
     1081 ataaagaagt cctgattgaa ggcgactgga tcaaccgatc gttcaacgca acaatctttg
     1141 cagctaaaga caatggcaag cttgaaatca gccgtaatgt tgccaatatt aacggtaatt
     1201 ttaatttaac agataatgct accgctcaaa ttggttttac ccaaggtacc tcacaagcat
     1261 gtattcgctc tgaccgcaca ggcgtagcaa cctgtaatat taacgctact ttatcagaga
     1321 ctgatttaaa cagctgggag agaaccaaag tggctggcaa tgtctcttta gctgacaatt
     1381 caacattttc gttaggcagt aaagcagact taactggctc aattacagct caggagtcca
     1441 ctaaggttca acttaatgat ggaagtattg ctaatttaac cggcttgagt acaacaggaa
     1501 tatttaatgg cgccaatggt tcaaccgtta atctttctgg ggtatggaca accttaacca
     1561 acactgttgt agatgtcttg aatgtcgcaa atggtagcca aatccattta aacactccaa
     1621 ctgcaacaaa acagaatacg cttaccgcta ataccctcac agggaacggc atctttaaat
     1681 ttgtcgctga tctgacgaaa acagcgagcg atatagtcac aattaaagac accgcaagcg
     1741 gtcaattttc gatagaaatt agcacaaatg gtagcgccca ttcagcccaa aagattaaat
     1801 tatttgaaac aacaaatgaa gaagactttt ctcttaattt agcaaatgaa gtgcgctcag
     1861 gcgaatatcg ctaccattta ctcaaagaag ggaatgtgta ttacctcaat ccagagaaag
     1921 aggaagaacc taaaattact caaaaagggc caagtgaaac cgctgaccca ttacctgaat
     1981 acaccgggga tattgagcat tctgaaaaag ggccgggtga aactgctgat ccgttacctg
     2041 aatacacagg cgacattgag cattcagaaa aaggatcggg tgaaaccgct gagccattac
     2101 ctaaatacaa tggaaatgca catttgatcg catccgagtt aactgcgcaa actaatgctg
     2161 tattaggtgt aactacagta ttagatcatg taattcattc ggaagggacc caaaaacaga
     2221 atacgcttac cgctaatacc ctcacaggga acggcatatt taaatttgtc gctgatctga
     2281 cgaaaacagc gagcgatata gtcacaatta aagacaccgc aagcggtcaa ttttcgatag
     2341 aaattagcac aaatggtagc gcccattcag cccaaaagat taaattattt gaaacaacaa
     2401 atgaagaaga cttttctctt aatttagcaa atgaagtgca ctcaggcgaa tatcgctacc
     2461 atttactcaa agaagggaat gtgtattacc tcaatccaga gaaagaggaa gaacctaaaa
     2521 ttactcaaaa agggccaagt gaaaccgctg acccattacc tgaatacacc ggggatattg
     2581 agtattctga aaaagggccg ggtgaaactg ctgatccgtt acctgaatac acaggagaca
     2641 ttgagcattc ggaaaaaggg ccgggtgaaa ctgctgatcc gttacctgaa tacacaggag
     2701 acattgagca ttcagaaaaa ggatcgggtg aaaccgctga gccattacct aaatacaatg
     2761 gaaatgcaca tttgatcgca tccgagttaa ctgcgcaaac taatgctgta ttaggtgtaa
     2821 ctacagcatt agatcatgta attcattcgg aagggaccca aaattggaaa gtatggtcta
     2881 aaacagatta tcaaacgaca gagcatcgct ctgccggata tggatttaac caagatgcga
     2941 acgttatcca tctaggatta gagaaagcct tagataatca ggtcacactt ggtatgatat
     3001 tatctcaatc aaaagcgaga aataattttg accattatta tagcggtaaa ggtcgcttaa
     3061 caatgctatc aatgtatgcg aagaaaacat ggcaaaatgg tgtttttgtt gcgatagata
     3121 ccggttttgg gaaagcaagc aatcgcttaa cttatcaagc aaatacagta aaattagatc
     3181 gttcagtatt tgtaacaggg cttagtatcg gtaaagcatg ggaatctgca aacgtgaata
     3241 taatcccatc atttagcgcc cgttatcatc atttatcttc agcaggtaat caacttgtag
     3301 atgcaaaaat cgaaacaaac gctgttgatc ttctcgctct tcaagctggt ctgtcaatta
     3361 ataaaacgct tgaactaaat ggcctgcaaa taaaaccgga aataggtagc tattttgttg
     3421 atgcaagcca tgggaaatta agaacacgtt tcaataattt acaaatagag cagcaaatgg
     3481 ggcgttattt taaacaagaa gcaggtatat ccgctaatta tcgcaatata aacgcaggaa
     3541 ttcaggcagg tttcttaacg gggaatacgc taaataaaca gcgttatatc tcgttcaaag
     3601 ttacatatga atggtaaata ttgagattaa gggctatcca ttactaaatg gcatggccct
     3661 ttatttactc ctcaacaatg taaattaccc atcaaaacaa actctgctgc ccaagcaaat
     3721 tctccggcac aggtttgatt tgaaatcctt tttccgccaa aaagcctttt agggtttgaa
     3781 tattataaaa ggcgtggctt ttagtggtgt tttcaaagta gagatagagc ctgtcaaatt
     3841 ccgttctgcg gctaaaaagc aattctgcca agccttttaa ttcctcgtct gaatagcggt
     3901 aatcgtggcg ttctgccgca ctctgccctt tccaccaatt cgggttacga ccatgtaagc
     3961 gtaaataagc agtacgttgg ttggcaaaaa agtgaaatgc cggtaagccg atattttgtg
     4021 ggtaatccac attacaccaa atcagattag agcttttcgc aaaggtatca aacaccgccg
     4081 gaatatgcca gcttgggtgg cgaaattcaa tcgctaacgg ataatccgca aaccattggc
     4141 acaactcggc aaggtaacgg cggttaagtg gcatacgttc aaattgagtt gggaactgaa
     4201 caaataaatt tgccaataac ccttcagcgg tgaacggagc taacgcatta agaaataatt
     4261 gtgcttgatc taaagtcgcc gtgcgttgat ggctgaaatc ttgatgcagt ttcaccgaaa
     4321 aattcagccg accttccgct ttctgcacca ttccttcaaa ggctttctgc ccgatggggg
     4381 cgtggaatgt gctgttaatt tccagcgtgt cgtaatgttg gctatagaca aagagaaaat
     4441 cctcttttgc agtgccgaat gggtaaagcg tgccgattaa atctgtgtcg gcatagccgc
     4501 cggtgccaat ataaatatga gggagcattg tgtttattct ttcaattttt tgcaaatttt
     4561 aatggttttt taaccgcttg caaactgaga ataaaagagt aagatttggc tatcttttct
     4621 tatttcatca tcattatgtg gatttggttt actctgctgg cagccgtggc tcaagccggt
     4681 cgcaatgcct ttcaaaagca attaagcgtc aatgtgcctg tattgggggt aacgctcgcc
     4741 cgctttttct atgctgtgcc gttggcaagc ggttatctct attttttata ccaatatgac
     4801 gataacctca acattcccca ttttccaccg ctgttttttg tatatgctat cggggctggg
     4861 ttggctcaaa ttctggcaac ttcgctaatg gtgcaacttt ttcacttaaa aaattatgca
     4921 ataggtgtcg ggctggcgaa aagcgaggca gtatgggcgg ctttactggg cgtgttattt
     4981 tttggtgtaa ccatcagtgg cattggctgg cttggcgtgg tactaggtgg agtggcgatt
     5041 ttcttaatga ccggcagcgg taatctacgc caactttcgt ggaaaacact ctttctcggc
     5101 atagccagcg gtttatgttt cgccctcaca tcactttggg tgcgagaggc aagcctgcaa
     5161 ctcaacagcc actatttgct ttcagcggcg tgggtacttt ttagcgtgat tagctttgag
     5221 gcagtgatat tggttatata cctagctctt ctccaaaaag agacactgat taaattcttt
     5281 cgttttccaa aattaggtat gttgaccagc ctgttttcat ttctcggctc attcggttgg
     5341 ttcaatgcaa tgagcctgaa ccacgttgcc tttgtaaaaa cgcttggaca agtggaaatt
     5401 ttctttattc tcggtatttc ctattttgtg tttaaagaac ggcttaaaat tcaagatttt
     5461 atagggctga ttttagtagt gattgccgca atcttggtgg tgctgggcta gatcggattt
     5521 ttacgttttt tatctagctt tgtagggtgg gcgtaagccc acgcaaaacc aataaatcat
     5581 ttatccgtgg gcttacgccc accctacgat acctaaaaaa attaaatttc acatcttagt
     5641 aataaaatga actataaaaa tcctcatagt atccttgtgg tgatttatgc taaaaatacc
     5701 caacgagtat tgatgctaca acgcaaggac gatcctgatt tttggcaatc ggtgaccggt
     5761 tcgatcaata ttggagaaac accgctggaa gcagcagaac gggaagtgag cgaagaaacc
     5821 ggtttgcaaa cttttgagca aaaacaaccg cttgttgatt gccaaaagca gatagaattt
     5881 gaaattttcc cgcattttcg gtataaatac gcacctaata tcacacattg tgtcgaacat
     5941 tggtttttgc tgccacttga tagtgagcaa gagcctattt taaccgaaca tttggcatat
     6001 cgttgggttt cagtggaaga tgcggttcga ctgactaaat ctcccaacaa tgcccaagca
     6061 atacaagaat atttaacatc aaaataagga aacaacagaa tggcaggcca tagtaagtgg
     6121 gcaaatatta aacaccgtaa agcggcacaa gatgcacaac gcggtaaaat ttttactaaa
     6181 ttaattcgtg aattggtgac tgccgccaaa ctcggcggtg gtgatacctc ttccaaccct
     6241 cgtttgcgtg cggcggtgga taaagcgtta tccagcaata tgacccgtga taccatcaac
     6301 cgtgcaatcg agcgtggtgt aggcggtggc gatgatacca atatggaaac caaaatctac
     6361 gaaggttacg gcccgggtgg tacagcagtg atggtggaat gtttaagtga taacgctaac
     6421 cgtacgattt cccaagttcg tccaagtttc acaaaatgtg gcggtaacct aggtactgag
     6481 ggttcggtag gttatttatt tagcaaaaaa ggcttaattt tagtggcaaa tgccgatgaa
     6541 gatgccttaa ctgaagctgc tattgaggcc ggtgcggacg atattcaacc acaagaagat
     6601 ggtagctttg aaatttatac cgcttgggaa gatttaggct cagtgaaaga cggcattgag
     6661 gctgcaggct ttaaaattga gaatgcagaa gtaacaatga ttccatcaac taccgttgaa
     6721 cttgacgcag aaactgcacc aaaacttctt gatttaatca accgccttga agattgtgat
     6781 gatgtacaaa acgtttatca caatggtgaa atcagtgacg aagtcgctgc attactgtaa
     6841 taaaaaaatc acgcaaaata agcataattt aggttatgct tattttttat gaactttttt
     6901 cctatattac tgactaacct aatgtagttt atatgctact actttactat aacattttaa
     6961 ggagagtcta tgaaattagt gaaatttgtc cctgccctag cagcaacttt agtattagcc
     7021 gcttgctcta atgcaaacac acaatctgct cctcagcaag ctcaggacgc tgtgactaaa
     7081 gtggctgaac aagcaacaca gcaagtgaat gaaattgcag gtaatgcacc tcgtgcaagt
     7141 ggtgcagtaa aagtagaaaa agcaactgat ggtgcaaaat caattgtata tcgttgccaa
     7201 agtggtaaac gtgtaactgc gaattatgtc ttccaaggag aagaggcaaa agcagtaaat
     7261 ctattagtcc aaagcggcgg taaaacacaa aagatcccaa cattaactcg tgatgcctca
     7321 aaccaagatt ctacttcatt caaaacggat aaatattctt gggatttaga cacaggcttt
     7381 accttatcat ctaatggcca gtcaggtatg ctaaccaagt atggtgctaa aacagatacc
     7441 atcgttgcta aattatgtga tgtagataaa gcattaacct caaaattaaa taaataatct
     7501 ttcttgattt tactactcat aagcgagaag ataatatctt ctcgcttatt ttattgcaca
     7561 aagatggcta ttattttagg aattgacccc ggctcaaggg taacaggtta cggtgtgatt
     7621 cgccaaaacg ggcgacagct ggaatattta ggaagtgggg ctattcgaac cacggctgaa
     7681 gatctgccta cccgcttaaa acggatttat gcaggcgtga gtgaaatcat cactcaattt
     7741 caaccaaata tgttcgccat agagcaggta tttatggcaa aaaaccctga ttctgcctta
     7801 aagctcgggc aggctcgagg aacagcgatt gtagcagcgg ttaatcacga tttacctgtg
     7861 tttgaatatg ccgcccgatt agtcaaacaa accgttacgg gaattggttc tgctgataaa
     7921 gtacaagtgc aagatatggt aacccgtatg cttaaactct ccgccaaacc acaagccgat
     7981 gcggctgatg cattagccat tgcgattacc cacgctcatt caatccaaca ttcactgatt
     8041 gttgctaagc aaagccagca gaatgtgagt agtgagaaag agcaaatttt agcactaatg
     8101 aaaacccgtt atagccgggg aaggtttagg ttaaaaggct aactcaatat aaaatgaccg
     8161 cttggaacta atgtttcaag cggtcatttt ttgagaaaat tttacaatta ctcgccttca
     8221 aaaggagctg agaaacgttc aattctcgcc ccaatctgac gtaatttttc ttcgatgtgt
     8281 tcatagccac ggtctatgtg gtaaattcta tccacaatcg tttcacccgt tgcaatacag
     8341 cctgccaaca ctaagctgat ggaagcacgc aagtcagttg ccattacttc tgctgatttt
     8401 aactgctcta caccatagca aattgcaata ttaccttcaa tttccgcttt ggcacccata
     8461 cgaatcagct caggaatatg cataaaacgg ttttcaaaaa tcgtttctgt aatacggctt
     8521 gtgccttctg caactgtatt taataaggta aattgagctt gcatatcagt tgggaaacct
     8581 gggtgtggca tagtgcgaat gttcactgct ttcgggcgac gacctagaga atcaagcgtg
     8641 atagtatttt ccgtcacatc aacctgcatt ccagcttcac gtaatttttc gatcactgca
     8701 tcaagagtgt ctgctttggt gttacggcaa gtaattcgac caccggaaat agccgctgcc
     8761 actaaaaatg taccggtttc aatacgatcc ggcactacgc tgtgttcgca accgcctaaa
     8821 tgctcaaccc cttcaatggt aatcatatcg gtacctgcac cagaaatttt agctcccatc
     8881 gcatttaaga aatcggcagt atctacaatt tcaggctcac gagcagcatt ttcaataaca
     8941 gtagtacctt ttgctagagt acctgccatc atcaccgata aagttgctcc tacgctcact
     9001 ttatccatat agattcttgc accgtttaaa cgaccgtttg aagttgcttt gacatagcct
     9061 tcatcaagct cgattttcgc ccccattttt tcaagaccgg aaatgtgcat atctaccggt
     9121 cttgccccga tagtacaacc gcccggtaaa gaaacttgcc caagttggaa ccgggcaact
     9181 aatggagcta acgcccaaat tgaagcacgc attgttttca ctaattcgta aggtgcaacg
     9241 taattattga tcttactcgc atcaatatgt accacgcctt tatcgctacc tttttcaacc
     9301 gttaccccta attggcgtaa gattttaaaa gtggtgtcca catcttttaa atcaggcaca
     9361 ttttttaacg taactgtttt ttcagccaaa atagcggcaa ataaaatagg gagtgcggca
     9421 tttttcgcac ctgaaatatc gacagtacca tttaaagaaa atggaccata cacacgaaat
     9481 ttttccattt gggagatcct aaaaaataat aatttgtagg ggcgaaaaat ttttcgccca
     9541 attttccaac gtttacaaaa gagtttgggc gaatagtgat tcgcccctac atttcatcta
     9601 tccaaccata tttagcaaac gctcagtttt ccatttttcc acgctgaata ctttaatggt
     9661 taaagcgtga atcgcattag tagtgaaata ctcagctaaa ggggcataaa cagcttgctg
     9721 ttgttttact tttgaaagag aagcaatgct gtcacttact acaataacgc caaagtgggc
     9781 attctcgcct tgagcgtgga cttctgttgc atcagataat gcttgtttta aaatttcttc
     9841 aatttgtgat ggattcattc tgacttccta aaatatgatt ggtaactcac tcaaataata
     9901 aattgctcaa accaaccgtc taaatcgtat aatgcagcca aagttctgac agaatctggc
     9961 gtattaatca aactgtttgg tatgatttta tggtaatgat tcagtaattc agcaagtaag
    10021 gtaaaaccgg cagaatcaat ccgagtgatt tcttttaaat cccaatatag gctttgtttc
    10081 cctgttggag ataaaaaaga agcacgttgc ttccataaag ggagcaacgt gttacgagtt
    10141 aattcgcctg atagtttcac aaaaagactt tcgttatttt gctgaatgtc ccattgtaat
    10201 gttttttgag gcataactaa actacttatt ttaaagtgat aggctgtttt gcagattgtg
    10261 ccacttgtgc aattaaggca tcaatccctt tttgacgaat cacacccgcc cattcgtttt
    10321 gcttggttgc aaccatactt actccttcag cggccatatc gtatgcttgc cattcacctg
    10381 ttttgctgtt tttacgccat ttaaaatcta atttgatcgg ctgtgcagca cctttacctg
    10441 acacgtttac acgaatgctt acgatagatt taccatccac cgatttcggg ctttcaattt
    10501 gcacactttg atcttgatac tgggttaaca cctgagcata agactgctca acaaattgac
    10561 caaaagcatt aaagaatgcc tctttttgtg catcagtcgc agccgataag tttttcccta
    10621 acactaattg gcctgcatat ttcacgtgaa cgtgtggcat taaatcgtta cgcacaatgg
    10681 tacgcaaata ttcagggttt gatttaattt tcgcttgatt tgctttaata tcgccaaata
    10741 atttatctgc ggtttgttgc attaatacat aagggctagt ttcagcaaat gcggtggttg
    10801 aaaataatgc agaaactgcc actaagcctg ttacgataat ttttttaatg ttttttaaca
    10861 ttattgatgc tctccaaaac tctaaattag aggttgttgt acttaattac tctgcttttg
    10921 gttcagcaga atcacttgct ttttcatctt cagttttatc tgacttttta tcaccatata
    10981 agaactgacc gattaaatct tctaacacca ttgcagaatt ggtatctaca aaagtatcac
    11041 cttctttcat cattgcagtt tcaccttcga ttacgaagcc aacatttaac gcaacgtatt
    11101 gctcgcctaa taagcctgag gttttaattg agagcgagct ggtatcggga atttgattaa
    11161 aactttcatt taccgctaat gccactttcg gggtgtaggt tttgttatca agtgaaatat
    11221 cagccactcg gccaactacc acaccgccaa ctttaatagg cgcacgaacc tttagtccac
    11281 caatattatc aaaagttgca tacagggtgt aagttttctc atttgagaag ccctgcacat
    11341 ttgctactct taagcctaaa aagacaagag ctgcaagccc aagtagtaca aataagccta
    11401 cccaaaattc atatttaatt gattgacgca ttgtctgttc ctttcaaaaa atcaaccgcc
    11461 gaacattatc gcagttaaaa taaaatccaa tcctaaaatc accagtgaag catttaccac
    11521 cgttcttgtg gtcgcttggc tgattccttc tgaagtcggt acgcaatcgt agccgttaaa
    11581 taaggcaatc cagaccaccg caaaggcaaa aatcacactt ttaataaagc cgttaattaa
    11641 atcgctggta tttaccgagt tttgcattac cgaccaaaaa ctgccaccat caacgccttt
    11701 ccaatctacc ccgactaatg agccgcccca aattccgata gcggtaaaaa tagcagctaa
    11761 caccggcatt gaaatcacgc ctgcccaaaa gcgaggagcg atgatacgtc taagcggatc
    11821 aaccgccatc atttcaagac tggaaagttg ctctgtggct ttcatcagcc cgatttctgc
    11881 ggtcaatgcc gaaccggctc gccctgcaaa taataatgca gtaactacag gaccaagttc
    11941 tcgtaaaagc gagagtgaaa ccaaagttcc caagctactt tcggcggcaa aatcgaccaa
    12001 taccacatag ccttgtaagc ctaacaccat tccgataaat aagcccgaca gcataataat
    12061 taagagcgat tgcactccta acacataaag ctgtttaatc agtaacgggg tatgttttct
    12121 aaattcaggt ttaccgatta atgctcccca taacataaaa gcggaacgcc ctaatgtacg
    12181 gataaaatta atcaccaccg ccccgataga gctaataaaa ttaaccatta aatagctcct
    12241 ccgtataatc ttttgctgga taatggaacc gcaccggacc atcagcttta ccggctaaga
    12301 attgtaccac ttgcggatct tcgcttgcct gtaaaatttc cggtgtacct tcagcaatca
    12361 ctcgtttatc tgccacaata taagcataat cggcaatact taatacttct ttcacatcgt
    12421 gagacaccac aatggaggtc aaattcaatg cctgatttaa ctctttaatc agctcgacaa
    12481 tcacacccat actaatcgga tcttgcccgg taaacggctc atcatacata atcagatccg
    12541 gatctaacgc aatcgctcga gcaagggcgg cacgtcttgc cataccgccg gaaagttcgg
    12601 acggcattaa atttgccgca cctcgcaacc caaccgcctc gagcttcaat aacaccaatt
    12661 tgcgaattag ctcttcgggt aaacgggtat gctcccgaat cgggaaagcc acattatcga
    12721 aggtagaaat atcggtaaat aacgcccccg attgaaacaa catccccatt cgttggcgaa
    12781 tttcatacaa ctctttgtta ttggctttgc aaatatctct gccatcaaat aaaatttcgc
    12841 ccgattcagg taaaatctgc ccaccgatta gcctcaacag ggtggtttta ccaatcccag
    12901 aaggccccat aatggcagtc actttacctt tctgcacttg cagattcagg ttatcgtaaa
    12961 tcactcgctc ccctcgcttg aaggtcaagt tttttacttc aaccaaattt tccgtttttg
    13021 tcatcaaata ggactcaaat taataaaagt gatatttatg gtctatcaaa tttgccagaa
    13081 tgtcaaaaaa cttttaataa tctgacaaaa atctgccttt acaagcggtc agatttgcta
    13141 aattttttgc aaaccggctg aactgaaaaa gaaaggtctt gtcttagcca atacgagcgt
    13201 tttcactcgt agattataaa aacataggat atgaggaaca ttcacaatat gaacaaaaca
    13261 atgaaaaaat catttttaac tgcattcatt ttaggctcaa ccattgccgc aatgccggcg
    13321 tatgcagaag caacattacc cacagccgta aatgggcaag ctgtgccaag ccttgcacca
    13381 atgctggaaa aagttcgccc ggcggtggtg agtattgcag tagaaggtaa aaccaaaggc
    13441 gatagccgcc gcagtcgtga aattccggaa gaatttgaat ttttcttcgg tcctcacgcc
    13501 gatttattcg gcaaccgctc atcagctcca cgcaatttcc gtggcgttgg atcaggtgca
    13561 gtcatcaatg ccgaaaaagg ttatgtgatt accaataacc acgtgatcga caatgccgat
    13621 aaaattaccg taaaacttga agacggacgt gaatttaaag ctaaattagt tggtgctgat
    13681 cccctttcag atgtggcgtt aattcaagtt gaagatccaa aaaacttaac tgaaattaaa
    13741 ttcgccgatt ccgataaatt acaagtgggc gattttacag ttgcaatcgg taacccgttt
    13801 ggcttaggac aaactgttac ttcaggcatc atctcggcac ttggtcgttc aaccggtcaa
    13861 tccgatgaag gctatgaaaa ctatattcaa accgatgcgg cagttaacca aggtaactct
    13921 ggcggcccgt taattaactt aaacggcgaa ttaatcggaa ttaacaccgc tattatttct
    13981 ccaagtggtg gcaatgccgg tatcgccttt gcgattccaa gtaatatggc aaacagcttg
    14041 gtgactcaaa ttattgagtt tggtgaagta aaacgtggaa tgttaggcat taaaggcggt
    14101 gaattgaatg ctgaccttgc taaagagttc aatatttcca cccaacaagg ggcatttgta
    14161 agcgaagtct taccggattc tgctgctgct aaagccggct ttaaagcagg tgatgtgatt
    14221 actgaaatca acggtcaaaa aatccgtagt ttcagcgaat tacgagcaaa agtagctact
    14281 tcaggtgtag gtaaagagat tgaacttact tacctgcgtg acggcaaaga agccaaagca
    14341 aaagtgacct tacaatcgga ttctgaagcc aaagttactg cttcaaacct cattccggca
    14401 ttaaaagggg cagattttaa caactacaat gccaaaggca ttaaaggggt tgaaatttct
    14461 aacgtagaaa aaggctcgat tgctgaaatg cgaagcctca aaaaaggcga tattatcatc
    14521 ggcgtgaacc gccactcggt agaaaacatt gccgatttac gcaaaatatt agaaaccaag
    14581 ccatctgtgg ttgcactcaa tattgtgcgt gacggtgcaa atttctatgt gattttgcaa
    14641 taaacctttt gatccactca aacaaaagcc gatgacaaaa atcatcggct tttgttattg
    14701 ctgggaattt aacatctgtc gtgccatttc catactttgg ataatcgctc tgcggttgat
    14761 agaatcatta ttgctatcta acactttacg ccaattatcg agagcttgtt gaaaattgtt
    14821 atttaaaaag ctgtcggagg ctagcaggag taaactggca ttttcatttt tatccaactg
    14881 tagggcttgc tcgataatgg cttgaatttc aacggtcatt ttctgcccgt tatcgtaata
    14941 acgagcggtg gcaatcgccc ccaaaatagc cgctcgtttt ccgagtagct tctcggcatt
    15001 atcgtagcaa accagtgccg aatcaaaatc attgcttaac gcataagcct gccctagttc
    15061 gtaccataaa tcaccgttat tcgggttttc tcgaagctgg ttttgcagac tcaaaatata
    15121 gcgttcattt ttcgatgtgc cgtgtgcatc gctcatctgt tgttgaaaat cttgatgttg
    15181 ttgcaaacct gattgcacca cttgataacg tccggaaagc ccatagtaag tcattgctaa
    15241 caacaaaatc gccacgcaac tcaggcttgc gattttagca agcggtcgat tttgagcatt
    15301 attttgcaaa acgctctgtt caaattgcgt tcgttcaaat tggtaacgtt gctctgcctc
    15361 acgctcaaac tcttgtctga cgtcatctgc aaaatgttgg gcaaatttaa ccgcttgttg
    15421 gtagttttct tggcttaatt gctcacgcgt tttcattttt gttgccttta tttttgcgag
    15481 ttcgccacaa aatagctaga aataacaggc taaacaagcc aaccggcaag ccccataata
    15541 cccatgtctg tggcgtgaat ggtggatcgt aattcacaaa actgccgaaa cgctcggtca
    15601 taatgcggat aatttcctca ttacttttcc cttgattcac catttcatac acttcaattc
    15661 gcatattgta agccgccgtc gcattggatt cgaccaaatt ttggttctga cattgcaaac
    15721 atcgcaacga acgagccagt gaaatcgccc gtacccgatc cgcctcattt tgaaattgaa
    15781 aggtgtccac catttcagct tgaaccgtgc cgacaaatag caacaagcca aatacaagcg
    15841 gtaatatttt gcggattttt tgcaaaaagc cgatggaaat tatgctattt ctcatttctg
    15901 agagcctcta atttgggtag gaaatcctgt gcaaaatcag ggttgtaacc cttttgttgg
    15961 taacgcacta caccgtgttt atcaatcaaa taactggaag gtgcagaaga gactttcagg
    16021 gtttggatca aaaagccttt ttcgtaatca tcaataatta aactaaacgg atttccccag
    16081 tttttcaatg cgttgagggc atcatttggg cggtcgctat aagttaagcc gacaatcggc
    16141 acgccttttt gttttagttc caacaaaatc gggaactctt taatgcacca agtacaccag
    16201 ctcacccaca cattgagaat ataaggctct ttcggcaagc tgttgttatt taaatgcgcg
    16261 ttactatcaa gtaagttctt gcctacaaac tctggaaacg gcttgccctg ccaatcttca
    16321 gtgggagcaa gggcatcttt attcattaac ggcacagtca aaaagccaac aataactaca
    16381 agtaacagga gcggaataag taacaggatt tttttcattt tttgttttct ctacgataac
    16441 cgaataatgc caacagggcg gccattacca tcatcatacc acctaaccat aaggcttgca
    16501 cataaggctt atagtgcaaa cggaaggcat attctaaatt gccgaactta tcccccatca
    16561 caatataaat atcgtctaaa ttgtggtgga aaagccctac ttctgccatt gtcatcgttc
    16621 ttacatcata atagcgtctt tccggtgtga cggttgccag caactgttca tctcggctga
    16681 tagaaaaaac ggcttgctcg gcggtgtagt tcggaccgat gagatcgtga taatcttcat
    16741 atttaaaggt ataaccggca agttccgctg cttgattcgg ctttaaccgc acgccgattt
    16801 catcgccgta ataactgttc atcattgccc caatcacgca aaccgcaaag ccgatatggg
    16861 ctaaccgcat cgcaagcggt cgaatttgcc acattttttg cgaatagggc aaatgagtga
    16921 gaataatcca gatcgcaagg ctgataaata tggtgggtaa cggctgcaaa gcaaaatgct
    16981 ctctttgcga gatggaggca taaatcaacc ctaacgctaa accgactgca atcggcagca
    17041 accaaagttt taccaatatc tgcttatttg aaatctgttt ccagcccagc accaccgcaa
    17101 agcccattac tatcattaac agtaacgcta gtggcgtgaa tacgctattg aaataggggg
    17161 cccccactga aatcgatccc caattcatca ctgtgaagat catcgggtag aaagtcccca
    17221 gcaataccac agaagcagcc acactaaata agccgttaat caataaaaat gccgtttctt
    17281 tagaaagtaa gttgaaacgc actttgcctt gccagagatt cgctcggaat gcaaacagag
    17341 caagggcaat gaaacttaag ccgaagaata agatcagcag tgccattcct ctgtcgggat
    17401 cgaccgcaaa ggcatgaacc gaggtcagta cacccgaacg aacaataaac gtgcctaata
    17461 ggcttaaagc aaaggcgaaa atggcaagta gaatcgtcca ataatagaaa atgccacgct
    17521 gttggctcac aattaaacta tgcaccaatg cggtgccaag tagccaaggc attagggagg
    17581 cattttccac cggatcccaa aaccaccagc caccccagcc gagttcgtaa tatgcccacc
    17641 acgcccctaa aataatgccg gcggtgagaa atccccacga aatcatcgtc cacggacgaa
    17701 gccaacgcat aatcgcagcg tccattccgc ctgaaacgag ggcggcgaca atcattgcaa
    17761 agctcaccgc aaagccgaca tagcccaagt agagcaaagg cgggtgaaag atgagcccaa
    17821 tatcttgcaa cattgggttg agatctcgcc cttcaggtgg tggtggaaag ccacgttcaa
    17881 atgggctgga aaccaataga atgaaaagta gaaaacctag tgcaattagc cctaacatcg
    17941 ctaaggttcg gttggcaaac aagcggtcaa ttttttgcga aaatttgcaa aataccgcag
    18001 accaaatcac aagagcggtg agccaaaaca gcattgagcc ttcgtgtccg ccccaagtgg
    18061 cggcaaattt aaaaaaatcg gggagctggc tgttggaatg agcggcaacg tagataaccg
    18121 aaaaatcatc ggttagaaaa gcataagcta aggtagaaaa ggaaaatgtg gtaaaagcag
    18181 cttgcaaata agtgaaaagc ggagccaatg ccagccaatg atattgcttg cgaacttcgc
    18241 ctagaagtgc aaaaccaact tgaaaaatgg cactaattgc agccaataaa agtgaaaaat
    18301 agccgagttc cggtagcata aaaaatccaa aaaatgaccg cttgtgaatg taaaaaaagc
    18361 cctctccact tgtgggagag ggacagattt ttcttcgttc agaagaaaaa tcagggagag
    18421 gggaattaaa taattttgct aaaaataaca atactccctc tctctgaaaa atatttctga
    18481 acgaaatatt tttcggtctc aatactcgct acgctcgctc cttcggagcc gttggcaaag
    18541 ccaacgttca aatgtaaaca tttgtcccac aaggggagag agtatatcct aacttgcaac
    18601 cgttagttgc cctgcataaa ggataaagta acgcaagcag agtacaccga ttaagtcgaa
    18661 aacggaaatt aagataataa atttcacgtt atgtttcaag cggtggctac caaaaatatt
    18721 ggcaacaagc ggaatcgcaa taccgattaa cattacgcct atccagaaca cattccccca
    18781 gaagccgtta agtgcatggg ttaaagcgag cgatttatct gctccaccga agtgtaagcc
    18841 cacaaagaac gctacaatta agcctaattc ggttaccata atcggcactt caaatttgtg
    18901 cataaagtgg acttcgtggc tttcaccgga taacttgcct gcgagtaaaa tcactaggaa
    18961 agttgctgca atacctgacg atgcccctga tgccaagaac aatgccggta acacagggtt
    19021 attcagcatt ggataactca ctaacgccga gagtaagaaa ccggtgtaag caccaagtac
    19081 agcagccaat acgaataaga taaattcaat tggttttaac agcttcgctt cggcaaaatc
    19141 gatcaaacca gagaccacag gtagataccg aacaatccaa tctttaaaca ttatggcgat
    19201 ccaaaccacc aatactgcca tataaagttg gaataacatt acccccatcg acattactga
    19261 ggtaaagtta tagttgaaca ttaatttcca gaatgtccaa ggtttggtta agtggaaaat
    19321 cagtaacagt aagccgataa tggttggtaa tgtgccaaga atagccgcac tacgaataat
    19381 ccagttttgg cttggttttt ccattttgac accgctatta cggtaagcaa tcgctaactg
    19441 aaccgcacct gatgaaatac caagtaggaa taagtaaata gcgatagtgc catcccaaac
    19501 aaggtttggg gtttggaaag gtacatattc attcattatc tatgttctcc tttaccaaat
    19561 ggaatgtgat ataaattcgg ctccgtgcct aatgccgttt tggtgcgata aaccggatta
    19621 tttttcactt tatggaaaat atcgctactt ggatcattca tatcaccaaa ggttaaagct
    19681 ttagtcggac aagcctctac acaagcaggc tgtttgcctt ctgcaagatt ggtatctcgg
    19741 caaaagttac atttatccgc cgattttttc tcagggtgaa taaaacgtac acgatacggg
    19801 caaaccgcaa tacagtattg gcaaccgaca cacaaatctg agtgtacatc aataatcccg
    19861 gtttcaggat cgataaatga agcaccggtc gggcaaacac tcacacaagg tgcattggta
    19921 cagtgttggc aagattggcg gaaaaactca tattgtacgt tcggaaactc accgaaaggc
    19981 tcactacgga taatttctaa acgagaaacc ccttccggca ctttgttggt ggtgcgacaa
    20041 gcgtccatac aagccgtaca gccgatacag gcagtttcat catgaaccat cgcatagcgg
    20101 attttctttt gttctttctc agtagcaaga gttatggagg tggcaagccc tgtacttgcc
    20161 acaactgcga tagcacctgc ccctgagacg aaatctctac gggtgcaagt cattattttg
    20221 ttccttttgc ttctgtggct ttcatttcag gatttttaaa ttcgcctgaa tgaattttgg
    20281 tatgacaatc cgtacaaagt ttaatgcgat ctttttcagg aatgtctttc atcggatctt
    20341 tttccgggtg aatttcatga cagttggtac aagcaatttt agttgcgtgc gtgtcgtgag
    20401 cccagaattt ttcacgcaat ttctctgccg tatggcaagc aaaacagact tgattttgct
    20461 catttaccga acgttcaagt gatgggttac ttgctttacc gtgtgggtta aaacgcatta
    20521 cgtcttttgc ccctttgcgg tggctttcag aaatattacc gtggcaactt atacaagtga
    20581 gtggctctcc attattcggg cttttcacat ctttttggaa atgtttgcct gcgtgatgga
    20641 aaggcttacc tgttgcgttt gccgattcgt gacattgagt acaatattta tttggatcac
    20701 ggcgtgcatc ttgagctact tttgcatcat cagccgtttc tgattgccaa agaggttttg
    20761 gctgctcagg cattaacgca ttcgcactgg aaattgcaaa aaaacctgca aatacgaccg
    20821 cttgtatgag ggcgactgct cgtcctgctt ttgagattaa ttttttcata gttcacctca
    20881 agctacatta ttttgcttct gcttttggtg ctgctaccgg tttgtctgct tcttctgcgg
    20941 gtaataaacc tttagcacga gcttcttttt cccattgagg aaccacagtt tttaagaact
    21001 catcttttgc tgcttgctct ttaggaatat ctaaaccaat agcaagttgt gctttctctt
    21061 tagttgagat gtccggaatc gccactggcg ttgttacacc gtgtttcgct aacactacac
    21121 ctaatttagc acgggcatct gctgcacggt cgatacctgt tgcgatggta cgtaacatta
    21181 catcaggtgc gtggaagtgg ttaccgtgac ctgccgcaga gtaatcccaa cgccattgag
    21241 cgtgacgaat tgccattaag atctctttca tctcttcttg agttgctcca gcttcccaag
    21301 cagctttcgc ttcaaagtga gctttcacta attgatcttc taagcgaatc attgcctctt
    21361 ttacttcgtg tttatactct tttacacgtt tttccaatgt ttctttgctt tgttcatgac
    21421 aagttttaca agtcgcttca aattggtcaa acggattacc gattttgtgg tcagtataaa
    21481 ctttgccgtc tttgtctttc acttttggca tatggcaatc aatacaggtt acaccatttt
    21541 tcccatgtgt accttgtgac caaacttcaa aatctgggtg ctgcgttttt agcatcggag
    21601 ctttcgataa agcatgagtc cagtctgtaa aattgatttc atcgtagtat ttttcaatgc
    21661 tatctacatc tacaccttta tcccaaggga aagttacatc tgttttattt ttgaaatagt
    21721 actccacatg gcagttagcg cacacagcag ggcgtttacc atgtttatct aaatcctcaa
    21781 acttccaacc aaccgtattc aatgcacgta atacgtgagg acgtgcaaca cgtagtgcag
    21841 gtttaccttg tttaaactct tctgatgtcg tgtcatggca gtctgcacaa cctattgagt
    21901 ttacaatttc agcaccatat ttcgcccatt taggatcaaa atatcctcgc tcacctttct
    21961 cctcaattaa gcgtggaaca tcagggcctt tacatgtcca acaagccata ggttgtggac
    22021 catcattttc atctttaggc gcgccggtgc gcaaaatatc acgcacatcg gtaactgcat
    22081 aaaagtgacc tcgtggttta ttataatctt tcgcaaaagc atagcctgcc cacaaaataa
    22141 cataacgagg gtcagcctct aacgcacttc ctcgatctgt ggattttgca gttgacttcc
    22201 aagaatcgta ttgtagcgga tatttttctg caaataggtg gtttgcagac tcaattttca
    22261 cgcctaattt ttcatgctta actgctttat ctgttaatga ttcagttttc gcctcttcag
    22321 ctaaagcagt ttgtaaacac cccaatattg aaattgttgc cacagctagg ctttttatta
    22381 aaaat
//
LOCUS       DANLXK010000027        22372 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.027, whole genome shotgun sequence.
ACCESSION   DANLXK010000027 DANLXK010000000
VERSION     DANLXK010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22372
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(103..1002)
                     /gene="cdd"
                     /locus_tag="PXD88_000871"
     CDS             complement(103..1002)
                     /gene="cdd"
                     /locus_tag="PXD88_000871"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL6280465.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(1016..1918)
                     /locus_tag="PXD88_000872"
     CDS             complement(1016..1918)
                     /locus_tag="PXD88_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6280466.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(1915..2271)
                     /gene="folB"
                     /locus_tag="PXD88_000873"
     CDS             complement(1915..2271)
                     /gene="folB"
                     /locus_tag="PXD88_000873"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL6280467.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            2341..2946
                     /gene="plsY"
                     /locus_tag="PXD88_000874"
     CDS             2341..2946
                     /gene="plsY"
                     /locus_tag="PXD88_000874"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL6280468.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(3020..4927)
                     /gene="parE"
                     /locus_tag="PXD88_000875"
     CDS             complement(3020..4927)
                     /gene="parE"
                     /locus_tag="PXD88_000875"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL6280469.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
     gene            5135..5359
                     /locus_tag="PXD88_000876"
     CDS             5135..5359
                     /locus_tag="PXD88_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL6280470.1"
                     /translation="MVVKILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEE
                     REGSRIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            5402..5731
                     /locus_tag="PXD88_000877"
     CDS             5402..5731
                     /locus_tag="PXD88_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL6280471.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(5770..6156)
                     /gene="cueR"
                     /locus_tag="PXD88_000878"
     CDS             complement(5770..6156)
                     /gene="cueR"
                     /locus_tag="PXD88_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL6280472.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            6245..6445
                     /locus_tag="PXD88_000879"
     CDS             6245..6445
                     /locus_tag="PXD88_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL6280473.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            6498..8690
                     /locus_tag="PXD88_000880"
     CDS             6498..8690
                     /locus_tag="PXD88_000880"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL6280474.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(8743..9528)
                     /gene="truA"
                     /locus_tag="PXD88_000881"
     CDS             complement(8743..9528)
                     /gene="truA"
                     /locus_tag="PXD88_000881"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL6280475.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(9593..10282)
                     /gene="folE"
                     /locus_tag="PXD88_000882"
     CDS             complement(9593..10282)
                     /gene="folE"
                     /locus_tag="PXD88_000882"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL6280476.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            10383..11090
                     /locus_tag="PXD88_000883"
     CDS             10383..11090
                     /locus_tag="PXD88_000883"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL6280477.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(11145..12242)
                     /gene="apbC"
                     /locus_tag="PXD88_000884"
     CDS             complement(11145..12242)
                     /gene="apbC"
                     /locus_tag="PXD88_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL6280478.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(12239..13786)
                     /locus_tag="PXD88_000885"
     CDS             complement(12239..13786)
                     /locus_tag="PXD88_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6280479.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(13812..14462)
                     /locus_tag="PXD88_000886"
     CDS             complement(13812..14462)
                     /locus_tag="PXD88_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL6280480.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(14584..16455)
                     /locus_tag="PXD88_000887"
     CDS             complement(14584..16455)
                     /locus_tag="PXD88_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL6280481.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            16637..16906
                     /gene="rpsO"
                     /locus_tag="PXD88_000888"
     CDS             16637..16906
                     /gene="rpsO"
                     /locus_tag="PXD88_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL6280482.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            16978..17847
                     /locus_tag="PXD88_000889"
     CDS             16978..17847
                     /locus_tag="PXD88_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL6280483.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(17937..19202)
                     /locus_tag="PXD88_000890"
     CDS             complement(17937..19202)
                     /locus_tag="PXD88_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL6280484.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(19221..20531)
                     /locus_tag="PXD88_000891"
     CDS             complement(19221..20531)
                     /locus_tag="PXD88_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL6280485.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(20543..21307)
                     /locus_tag="PXD88_000892"
     CDS             complement(20543..21307)
                     /locus_tag="PXD88_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL6280486.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(21307..22242)
                     /gene="hemC"
                     /locus_tag="PXD88_000893"
     CDS             complement(21307..22242)
                     /gene="hemC"
                     /locus_tag="PXD88_000893"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL6280487.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         6406 a         4935 c         4188 g         6843 t
ORIGIN      
        1 aggcaaatat aattgttgca aaagtgtgaa gctcatcaaa aaatttaaca ctaaaaaata
       61 aattgcttaa agatacagca cctttgcaaa aataaatcaa aattacaccg cttgtagcga
      121 aaggtattca atctctaacc caaatagtga ttttgccaat gcttgagtca ttgcataact
      181 actgagagag cctttcgcct cagccagcac aactcgagta acgggaatat cggcaagccc
      241 taaaaataat cgatagttca acgcgctttg caacggtaaa aaagtaggat taaaagctgc
      301 attctcagta tatttaccac aaacaatacg ctcacctact tgcagtgcaa ccccactaaa
      361 tgcgttgctg taaggggcat aagcattatt ggcagcaaaa attgccgctt gttgtaaatg
      421 atcgccctta acctcaaatt gttgcggttg ttcatcaaat aagactttct caatccctaa
      481 atctttcggt ccaaaactat ccggcaaata gctatggagc aaattatttt ggctatgcgg
      541 taaatgtact tttaagcttg ccgcactgtt taattcattc ataaattggc ggcaatgccc
      601 acaaggggta tagttcacaa ccacatctgt tatcaaagtt tcccctgcta aaaatgcgtg
      661 cgagattgca ctttgctctg cgtgaacgga ttgttgcata cattccccgg aaaactcttg
      721 gtttgcccca aaatagaaat ctccgttttt gccaatcgca accgccccta cattaaaatc
      781 ggaaactggt gtaaccgcat aacaggcagc aatggcaatg caatataaag ccaactcaac
      841 acgagagcgt ttaaattttt cacagagttc atcaaccact tcgtaagaga gctgcccgtg
      901 aaaatcttgc ttgataagtt gctcaataat agcttgtgta acttcacagt ttttcgctgc
      961 ttttaattgt tcaaaacgct ctgtaatgtc tgttcgaaac atactgtacc tccgtttaat
     1021 gttttttata gctgcaaatc agtatccctg ccgtaatcag tatggcacta ataatatggt
     1081 aagtatgaac tgattcattt aataaaataa tactgaacat tgctgcaaag agcggcgtaa
     1141 aattagtcat taccgctcct ttagcagaac cgactattgc aatgccgaaa ttccaaaacg
     1201 cataagagag aatagaaggg ccgataacca aatagcctat cccactccat tgtaaagcgg
     1261 tcaaatttgc taaatttttt gcagattctg ctacatattc atagataaaa aatggcgtta
     1321 acgttagaac tgccagcccc actaatacgg tcaaaaacac cgtattgctt ataccttgtg
     1381 gacgtagccg aatcacacaa caataaaccg cccagcttat agtagaagca atcgcccata
     1441 aatcaccttg attaattgcc aagctgaata agcgagttag cttcccttgc atcaatagcc
     1501 acagcactcc cagcaaactg attattgccc cacttagaat aatcgggctg attttctcct
     1561 taaaaacgag ccgatttaaa aatagcacca atacaggcga aatagctaaa tagagactcg
     1621 cattcaatgc tgttgtcgtt tttaaacctt catataaggt agccgggaat aaaattaccc
     1681 caagcagacc taatacccac atcacaccta aacgaggttt taataagtgc attacccgcc
     1741 aagttgggcg aaaaaagagc aaaactaaaa ttaaaaaagc cggcaaccaa cgcaaatagg
     1801 ttaaggtaat aggctgaact gccccactta acactttgcc taatacaaaa ttcccacccc
     1861 aaaaaagagt agcaacgatt aaactgaaat accccaattt cagtgatgat gagatcattg
     1921 atgacctcgt tctacaatca cacctacact gcttgcttgg gcaaccgctt tcggcttatg
     1981 cagttcaatc cgaatccaag aaagttgata ctctttttgt aatagttccg ccagttgata
     2041 ggcaacagtt tcaactaatt tgaaaggttg agattcaaca aaatccagca ctttttgcga
     2101 tacttccgca taattcaagc aatattgtac atcatcggtt tctgccgctt tggaaaaatc
     2161 ccacgccata tcaatgttaa aaaccaagcg ttgcttaatc gtatgctccc aattgtaagc
     2221 cccaatggaa gcaaaagcgg ttagttctcg aataaaaacc ttatcactca tttttcgtcc
     2281 tgttttattt tctgaatttc tgtaaaatat agcacaagat aaatttaatc aggaaaattt
     2341 atgaatttaa ttccctattt attgatctta accgcctatt tgctcggctc gatttccagt
     2401 gcggtcattt tttgtaagct ggcaggcttg cctgacccaa gagaagtcgg ctcacacaat
     2461 gccggtgcaa cgaacgtact acgaattggc ggtaaaagtg ccgcattagg tgtgctttta
     2521 ttcgatattt taaaaggcac attaccggtg gcgatgggga tttattttga actctctccc
     2581 tcacaactcg gtttcatcgc cttagcggtt tgtcttgggc atattttccc gattttcttc
     2641 caattccgtg gcggaaaagg cgttgccacc gcatttggtg caatctccgc attaagcttt
     2701 attgttgcag gcggtgctat cggcacttgg ctactggtgt ttttaatctc cggctattct
     2761 tctttaagtg ccgtcttcac tgccttggtc gtaccgtttt acatttggtg gttcgagcca
     2821 caatttactt tccccgtcgc cttagtttgt tgcctattgg tttaccgcca tcacgataat
     2881 attcaacgct tatggcgtgg gcaggaagac aaactgtggg ataaattcaa gaaaaataga
     2941 gcataaaaat aggcatagtg aaccgttcgc tatgcctatt tgcaaattat tgcggaaaaa
     3001 tcaccgcttg tcttctcgac taaaccgcta aatctgcttc atctcctcga ttttgtagcc
     3061 attgtttacg atcttccgct cgttttttac ccaatagcat atccataatt tcaaaggtat
     3121 tcaattcgcc ctcttctacc gtgtcatcaa aggttaattg tactaagcgg cgagtgcttg
     3181 gctccatcgt agtttcacgc aactggctcg ggttcatttc gcctaagcct ttaaagcgtt
     3241 gcacatttgg ctttcctttt ttcttggcaa ggcgagctaa aatcgcctct ttttccgcct
     3301 catctaaggc ataatgcacc tcatctttgc cgatatcaat gcgataaagt ggtggcattg
     3361 ccacataaac gtgtccgttt tgcaccaatt tcgggaaatg acgaaggaat aacgcacaca
     3421 gcaaggtggc aatatgcaaa ccgtctgaat ccgcatcggc aagaatacaa actttgccat
     3481 aacgcaactc ttctaaatta tcgctatcag ggtcaattcc caaggctacc gcaatatcgt
     3541 gtacttcttg tgaagccaat acttggtctg atgaaacctc ccaagtgttt aaaatcttac
     3601 cacgcagtgg caaaatggct tgatactctt tatctcgagc ttgttttgcc gaaccgccgg
     3661 cagaatcacc ttctaccaag aaaagttcgg tacggctgag atcttgagct gtacaatccg
     3721 ccagtttgcc cggtaaagcc ggaccactca ccaatttctt acgcaccact tttttcgccg
     3781 cacgcatacg gctctgggcg gaactaattg ccatttcagc aattaattta cctgtctgca
     3841 cattttggtt aagccataaa ctaaaggcat ctttcaaggt gctatccaca tagcttgagg
     3901 cttgacggga agacaaacgc tctttggtct gccctgcaaa ttgtggctct tgaattttca
     3961 gagaaagcac ataagcacaa cggttccaca catcatcagc ggttaatttt acccctttcg
     4021 gcaataaatt atggatttcg caaaactcca ccatcgcctt taataaaccg ttacgcaagc
     4081 cattaacgtg cgtgccgcct tgtgcggtcg gaatcaggtt cacatagctt tccgctacta
     4141 actcgccccc ttccggcaac caagttaatg cccagcttac cgcctctgtt tcagcagtaa
     4201 catcaccaat aaacggtgga ttcggcacgg tttcataacc gtttaatgcc tcgctcaaat
     4261 aatcagataa gccgtcttcg taataccaac tttcttcggt attgttgatt ttatcaataa
     4321 aattgatggt gagtttcggg caaagcaccg ctttggctcg taacaaatgg cgtaaacgac
     4381 tcaccgaaaa acgagggcta tcaaaatatt ttgggttcgg gtaaaaacgc actgtcgtgc
     4441 cggtctgttt tttcgggcaa gtaccaatta ccgtcagatc ttccactttt accccgttgg
     4501 caaaggcaat cgaatagact tctccgccac gtttaatctg aatttcaacc cgttcggaca
     4561 gggcatttac caccgaaatc cccaccccgt gcaaaccacc ggaaaacgta tagtttttat
     4621 tggaaaattt accgccggcg tgcaatttcg ttaagataag ctccacccct gaaattttct
     4681 cggtggaatg aatatcgacc ggcattcccc gcccgttatc caccacttcc aacgaattat
     4741 cagcatgaag aatcacatca attttatctg caaagccgga caacgcctca tcgacactat
     4801 tatcaatcac ctcctgcccc aaatggtttg gacgtgtggt atccgtgtac attcccgggc
     4861 gaagctgcac cggctcgagg tctttcagaa cggtaatttc atccgcccca tagcgttttt
     4921 cagacattat gctttctctt aggcttaaaa taaaataagg ctgaatttta aggaatattc
     4981 agctattttg caaaattttg gtgaaaaatg acctgttgtt atgcaataaa aactattttt
     5041 gcgatctaca tcgaaaaaat gagttttaat ttccctattt gcttattcat tcagtatctt
     5101 aatctcactt tttattttaa aatggtacta tattatggta gtaaaaatcc taaagcggaa
     5161 atctcaaaag acactacaac aaatctacac ccagcctatt tctgccaata ttaaatggac
     5221 aaatatagaa gctctttttc tagagttagg agcagaaata gaagaacgag aagggagcag
     5281 aattgcagtt gttttatttc aacaggtcag agtatttcat cgcccacacc cgaatcctga
     5341 tacagataag gggcggtagc gagtattaaa aaatggttat ctgaaaacgg agtcattcct
     5401 tatgcgtaat attatggata ttaatggtta taaagctgtc attgcttacg atcccgaaac
     5461 agaattattt cgaggtgaat ttatcggatt aaatggtgga gccgattttt atgccgataa
     5521 tgtcattcaa ttaaaaaaag aaggtgaact aagtttgaat atctttttag aactttgtag
     5581 agaaaaaggt attgagccgt tcaaacaata ttccggaaag tttaatgttc gcctttcgcc
     5641 tgaattacat aaagctgcgg taattgcagc aactgctgaa aatttaagct taaatgaatg
     5701 gattaaccaa acgttagaaa agagcgtgta gcctaattgc aaaacaatca cctattttga
     5761 ccgcttgtat tacccgttta acccattcaa tatcgaacac tccgaattgg cgttgccaca
     5821 gcaagagcta ctccagcttt tgagcaaagt cagcatttgg tttaaatcgg caattttttg
     5881 ttcaagctca ccgatatgct gttcggttaa ttgttttaca tctcggcttg agcggtttgg
     5941 gttgtcgttt aatttaagta gttcgctgat ttgagccagc gaaaagccca cttttcgggc
     6001 attgctgata aaatgtaatc ggctcaaatc agtagcattg tagaatcgat accccgcttc
     6061 ggtgcgactt gtcggcggca gaagtcctgc tttttcataa tctcggattt gtttggcgga
     6121 aagcccggtt ttttctgcgg cttggctaat attcattata atcctctcac tttaatcgct
     6181 tgaccttaac ctaaggttaa gctttattat acgcctgaat aatcactcaa aacaggagaa
     6241 aatgatgaca attaccctac aacttgatgg cttacattgt ggcaactgtg tgaaaagtgt
     6301 cgaaaaagcg ttaaatggcg tggctggggt gaaccaagtt agcgtaacgt tagaaccgca
     6361 aattgctgtg gtggaaggct cagcagaagc acaagcctta attgaagcgg ttgaagacat
     6421 tggctttgac gcaaaattag cctaattaat aaggggcaga aattttgccc taatctgccc
     6481 aatatttcgg aggataaatg acaagcacag ctcactattc gccagaacaa caacttttga
     6541 ttgatggaat gcactgtgcc gcctgtgttc ggcgagtgga aaaagcctta cttaaagtgg
     6601 aaaaggtgga atttgcctca gtcaatcttg ccgatcaaac cgcttttgtg caaggcaacg
     6661 ccaaccctga agccttggta gcagcggtag ttaaaatcgg ttttggggca gaagtgctgg
     6721 aaagcgagga agaacgccga attaaacaac aagcccaaac gcaacgagtg ttagggcata
     6781 aacgcactca atttatgctt gcccttgtag ttggttttgc cttagttgct tttgggttct
     6841 acaaaggaat gacggtaaac gaaaccaatc gttcgctttg gctcagctgg gcaggtatta
     6901 gccttgcgac aatgtatttt tcaggtaaag atttctttct tggggcattt tcagcactga
     6961 aaaaccgctc agccaatatg gacatgttag tagcaatcag caccggcacg gcttggctct
     7021 attcttgttg gctcacgctt ttcccacaac cgaatgctca cgtttatttt gaagccagcg
     7081 tgatgattct cggctttatc aatctaggaa aatacttaga actgaaagcc aaacagcgtt
     7141 cctcgctagc attggaaaaa ttgctggatc tcgccccaaa acaagcggtc atttttgaag
     7201 aaaatattgc aaaaaccatt ccggctaaag caattaagcc acaaatgcgg gtgcaagcct
     7261 taaccggtga ccgcttggcg gttgatggta ttttagacag tggctctatt tgggttgatg
     7321 aatcaatgct caccggtgaa gccctacctg tagagaaaaa aatcggtgat aaagtgcgag
     7381 ccggcactct ggtgcaagac ggttcaggca cttacattgc cgaacaggtc ggctcacaaa
     7441 ccgctttggc tcgtgtaatc aatgccgttc gccacgccca aagcagcaaa ccgccattgg
     7501 cacagtttgt agataaaatc gccgctgttt ttgtgccggt ggtggtttca atcgcattac
     7561 tttctgcgtt aatttggctg gcagttgggc aggattttgc ctttgcactc tcgattttta
     7621 ctaccgtgtt gatcatcgct tgcccttgtg cattggggct ggcaattccg ctttctacca
     7681 ttgccggcgt ggcacgttct gccgaatttg gcgtgctggt gcgaaatatt gaggcactac
     7741 aagcaagcag tgaaatcgac accctagtgt tcgataaaac cggcacactc accactggca
     7801 gaatggaagt gtcggatgtt ctcaccttta acggatttga gcaaaagcgc ttgctacaac
     7861 ttgctaaaag tgtagagcaa cacgcctcac acccgattgc gaaagcgatt gcaaaatttg
     7921 ccgaaaatca gaccgcttgt ggtgtaaccg atgtgcaagt gttgaaaggg ttaggcattt
     7981 cagcaaaata tgaaggcagt acaatcagaa tgggaaattg gcaatttgta ggcgaaacca
     8041 ttcaagcaaa tcttgcctcc ctattgcccg ctaaagaggg ggatttttcc tcaaaaattt
     8101 ttgtttcggt ggataatcaa ctcgccggtg tattgtcggt ttcagaccaa cttcgccctg
     8161 aagcgaaagc aaccattcat caattccaag cggaaggcta tcaatgcgtg atgctgaccg
     8221 gtgatcgcca acaaactgcc gactatttcg ccaacgcatt ggggttagac ggcgtgattg
     8281 cggaggtatt accggagcaa aaagcggaaa aaattcgagc cttgcaagca gagggtaaaa
     8341 aagtagcaat gattggcgac ggcataaacg atgctccagc tctggctcaa gccaatgtgg
     8401 gcattgcgat gcacaatggt tcagatattg cagtggaaac cgccgatctt tcgctgatgc
     8461 gagaagggct agcaccactg atgcaaattc taccgttctc taaaaaagtg ctgaaaaata
     8521 tgaagcaaag tttgctcggg gcttttatct ataatgttat tgcgattcct attgctgccg
     8581 gcgtgcttta ccctttcacc ggctggctac tcaacccaat gattgccgcc attgcgatga
     8641 cattgtcgtc aattaccgtg gtgttaaata gtcaaaggtt gttgaaataa tttaagcggt
     8701 caaatttgca tatttttttg caaatttgac cgcttgtaat cactaatccg ccaaaaacag
     8761 cggcccaaga ggtgttttcg gaatgccaaa atgctcaggg taatgcacct cgaccaaata
     8821 tagcccctcg gctttcgctg taggggcagc tttttcccgg tcacgttgct ccaacaccca
     8881 ttttgcccat tccacaggct gtctgccttg cccgatttcg agcaatgttc ccacaatatt
     8941 gcgaaccata tgatgtacaa aggcgttggc ttgaatatca acaatcacat aattgccttg
     9001 ccgagacaca tttaaatgat gaatattccg ccacggcgta ttagattggc atttggcggc
     9061 acggaaagag gaaaagtcat tctcgcccag caaatactgc cctgcttggt gcattttgcg
     9121 ttcatcaagg ggaaagtgaa agtgggtaac acctttaggt aaaattgccg accgcagttt
     9181 ttggttaaaa ataatatagc ggtaacggcg ggcggtggca ctaaaacggg cgtgaaaatc
     9241 ctcattcacc gctaccgccc atttcaccgc aatatcatcg ggtaaatgag cgttagtgcc
     9301 gaaacaccag ctttgtagcg ggcggtttgc ttgcgtttca aaatgcacga cctgccctgt
     9361 gccgtgcaca ccggcatcgg ttctgccggc acaaaacact tctacgggcg aattggcaac
     9421 aaccgacaac gcctgctcta gctgttgttg tacactctct accgcttctt gtcgttgcca
     9481 gccaaaataa cggctgccgt catattcaat acctaatgcg attttcattt taataccttg
     9541 ataaaaagag gggcgaaaaa tttttcgccc ccacagtaat tgatatttgc aattatttat
     9601 tcaataagcc taaaaattct ttgcgggttt ctcggtcttc taagaaaaca ccgccaaagg
     9661 cagaagtaac tgtatagcta ttggtgtctt ttatgccacg gcatttcacg caaaaatggg
     9721 tggctttcac atacaccgca acatcgtctg tttctaaaat agtttgaaag gcagttaaaa
     9781 tctgttcggt aaaacgctct tgcacctgcg gacgttgggc aaaaaactgc acgacacggt
     9841 tgattttcga gagtccaatc acccattttt tcgggtaata ggctaccgct actttgccgt
     9901 caatagtaac aaaatgatgc tcacaggtag aagttaaagt aatatcgtcc accagcacca
     9961 tttcactgac tttcattcgg ttttcaatat tggtaatttt cgggaaggta gcataatcaa
    10021 gcccgctgaa aatttcatca acatacattt tcgccaaacg atgaggcgtt tcttctaagc
    10081 tgtcatcact taaatctaaa ccgagcaatt ctaaaactgc ctgcatatgc tgctggattt
    10141 ctgctcggcg actggcttta tctttggtat gagtaacagt cggagtttca atgccttttg
    10201 ccaacaaggc ttggcgaact ttttgagcct ccggcgaaag cgtgttttct gtgatagtta
    10261 attcgggcga gatcgttgtc attggttttc ctctcaaatg taagctgaag attctaacaa
    10321 attgacatca aaaaaaatag ctctaaaatg agctatttca gccataaaca ccctctttat
    10381 ttatgcaaaa tatacagtat ctctttaatg ccgacctgat tcccgaacat caagctgaat
    10441 ttgtgcagtc tctcttaact tgcaaaaatt ttgacaattc cgaccgcttg ctaggcttct
    10501 caaaagggcg aggtacgact tggtttttag atacctctgc tgaactaggt atcaatgtgg
    10561 tgcttcgcca ttattatcgt ggcggcttgt tcggtaaaat catcaaagat agttactttt
    10621 ttactcgctt tgaggccacc cgagcgtata aagaattttt cttactgcaa caaatgttag
    10681 cttggggttt acctgtgcct cgccctgtgg cgattaaaat agaaagacat ttttgttgct
    10741 atcgtgccga cattatgctc gaaaagctag aaaacacaca agatttaagc aaaatcttgc
    10801 aatcccattc tttatcgaac gaacaatatg agcagatagg gaaactgatt cgcagtctgc
    10861 ataaccatca aattcaccat tccgacttaa atatccataa tattttgctt ggtaatgatg
    10921 gcaaattttg tctgattgat tttgataaat gcggcattga gccgggcgaa aattggaagc
    10981 aaaataacct agaccgcctg ttacgctcgt ttaagaaaga acaagggcga ttaaatattt
    11041 tcttcagcga agaaaattgg caggctgttt tgagaggata tactctctaa gaaacaataa
    11101 tggcacaagc ttagaaactt gtgccatcaa atcatcaata ttaactactt cacttcacga
    11161 atcataattt cagacggaat cacactgcct tgccagtaaa gttcagaagc tactttttcc
    11221 gctaatgcga ggtaggcttg gctgatttcg tgttccggag ctgccaccac cgttggcaca
    11281 ccgctatcta aatcttcacg cagacgaata tgtagtggta attgtgctaa cactttagtg
    11341 ccatattttt gggcgatttt ttccgctccg ccggtgccga aaattgcctc atggtgtccg
    11401 cagtttgagc agatatgcat tgacatattt tcaatcaccc caagcactgg tactgagact
    11461 ttctcaaaca ttgagatccc tttaatcgca tctaataagg caatatcttg tggggttgtt
    11521 actaccaccg caccggtcac cggaatttgc tgtgaaagcg taagctgaat atcacccgta
    11581 cccggtggca tatcaatgac caagtaatcc aattcattcc accaagtttc atttaaaagc
    11641 tgacttaacg cactgcttgc catcgggcca cgccaaatgg tggcgttatc ttcttccatt
    11701 aaatagccga tagaattaga ttgcaagccg tgagcggtaa tcggcgtgat gtgcttgtta
    11761 tcaggagaag ttggacgttg gtcttttgct cccaacatat gcggaataga tgggccgtaa
    11821 atatccgcat ctaaaatccc cactcttgtc ccttgtgctc gtaaggctaa agcaagatta
    11881 actgaggtcg ttgatttccc taccccacct tttcctgaag tgaccgcaat gatatttttt
    11941 accccattga ctgccgggtg tttattcgcc cgttttaagg tcgcaatttg gtaatttaat
    12001 acccatttta caccgcttga acctgttact tgctttaatt tagcctctgt ttcggctttt
    12061 aaggtttcaa aaccactgtt ccacgcaaat ggcatcgtga tttcaattct aagaatatcg
    12121 ccccctaatt ctgctttttt aaacgcatta agggcaatta aatctttctg taaagtcggg
    12181 tgggaaaatt gttgcaagat tgctttaatt tcaacaagtt gctgttcatt taattggttc
    12241 attggttatc cttgtttgct aaattgcgtt ttaaatcttt gctataaatt acttcgctat
    12301 cgttattcaa atcaataccc aaaagggagg aaacaatccc aacccgatga tggtattgaa
    12361 ataatggcaa tacggcaaca tcgctataaa gctgctcgct aatttcttga ataagtgact
    12421 ctctcgcttc tgcactaagc gtttctgttt gtaaacgatt taatttttga tcgactatct
    12481 cacttttata gccggaatga ttatccgggc tcattgaatg aaacttctgc aaaaatacaa
    12541 tcggatcagg ataatctgca caccagcctg ctcgtgctat ctggtaatct ttttgttccc
    12601 ttactttatt taaagtctgc caatcaacca ttttaggtgt aatattaaat aattctgatt
    12661 gagaaagggc tcgagtaact tggttagcaa tattaatgct attctcatca tataacaaag
    12721 tcagctttaa aggattataa gggctaattc ctgcttttgt taatagctgc tcaaccacaa
    12781 caggattcca acgcttttct ctatctttta ctaagctatg tggaattaca gactgactcg
    12841 gaaccccata ttcttgccca ctatttgctg aagccaccat tgtccttatt gcttcacgaa
    12901 tctctcgttt agctaataat ggatcatcaa aattgaactc atagtaataa gagcacaaac
    12961 gcggaaattt cacgatattc gtttttttat ttaataaagg attctcgaca atatcaaaag
    13021 cagagcagtt ttggatagtt gtaattaaat catactctat agtttgaaag ggaatttctt
    13081 gggttcgagc ctttaacacc attttttgag catctagttt ctcgagacgg taagacgcat
    13141 tgctcacgaa gttatctatg gttggagcaa tcccttgata agtaggtaat aatgcggaat
    13201 gtgccagcat ttcaggcaat tggtgatttg ggtgatttag ccgaattctc aatgtatgcg
    13261 catttaatgc ctctacaccg agttcttcaa ctgactttat ttgctcttca atcgcttttg
    13321 cattttctat acccatatag atgagatatt tagacaatac agaatgattt tgaggatcta
    13381 ttaaacgtcg ccagcttgct acaaaatctt gtgcagtcac aggttggcca ttagaccaca
    13441 cagctttctc atctaaaata aacaaccact ctttttcatc ttcagtaaac caattctgag
    13501 caatggccgg aacgacatca ccttttctgt tgtaggccgt taaaccgact aatagatctc
    13561 ttaaaggagc agcatctgca gaagctttaa ttttatgtgg gtcgagttga aatacagcag
    13621 aataaattgc acgtttgagt aaagtatcac tctgccggtt ttctacccag acagattgaa
    13681 tggattgagg gcaaattaat tgatcacaag atgtaataag cagaatgcaa gcggtaactt
    13741 ttgcaatttt ttttacaaat gtaaccgctt gtaaggattt caacataaac tccccaaagg
    13801 ttaattaaga tttattttac aagaagcaca ggaaataaag ttgtaattcc tgccacaata
    13861 atttcaattc ccagcgccat taaaatcagc cccatgatac gagtaacgac attagatcct
    13921 gttttgccta attttttcac caaaggggct gaatagcgga ataaaatata acaaattaat
    13981 gcaaatacaa taatcgcaat gctaaagcca acatagtctt cccaagtatg gtagcgggtt
    14041 ccccacacaa tggttgagcc aattgcccct ggtcctgcca taatcggcat tgctaatggc
    14101 acgacaccga tattttcgta ttcagtaata tcttcatttt tctcttcttt attttgtttg
    14161 tgttcaccta atttaccgct aatcatcgtc atcgcaatgc ttacaatcaa aatgccacca
    14221 gctactctaa aagagctaag tgaaatgcta aacgcattga gaatcagatt accaaaatag
    14281 aggctgacta ataaaattac tccaatagaa acagcggtga ttaagctggt gcgatttctt
    14341 tccccctcat attggtgagc ggtcatactg aaaaaaatag gcaaggaacc aaaaggattg
    14401 actatagcaa atagaccaat gaagaattgg aggtagatgg caaaattaat aatgatatcc
    14461 acaaaaactt tctcaaacaa cagtgtttcg ggcgctatta tatcggttaa tcaaggtaga
    14521 tacaaaccaa aagcacccag cctaaaggac ggttgggtgc tttttgataa aatgaaaggc
    14581 ttgttagtgt gacgaacgtt gctgcataaa atcttcattt acctcaattg aagcttttgc
    14641 acgtagcgat tgtaagaatt cattacgtaa aattaaacga ttagcttgtt caaattgtgg
    14701 cgccaatgtc ttaaactgtt cagcattccc ttccgtaatg ttatctaagg caacaataac
    14761 tacatcgccc ttttgattac gtgccatttg ataagtcgtt ttatcttgcg cctttttcat
    14821 tgcgaaaatc gttccagcca ataccgggtt ttctacttct gcttgcatat aaactaaagt
    14881 ttgtggcgca ttaaatttca cgtccactga tttcccttca ttcaaggctt ttacattttc
    14941 ttctactttc gccagcaacg ctttttccgc tttttctgcc ttcacaaaat tttcaactgc
    15001 tgcttttgct tcatcaaaag tttgtggacg ttctgcatca taatcactca ctctcacaaa
    15061 caatgtctgt ggatttgcat cattcccaac atctaaagca tcagaatttt gtttattttg
    15121 gcgtagctct ccttcaaaca aaacttttaa tactttctca ttttgtaaag cagtaggtac
    15181 gttttcacgg gtaaacagat ccgttttttg cagttccaca ttaccggctt tcgcaacttc
    15241 ttcaagtgaa gaattattct caaaggcttt atttgccatt tcgcgcgcaa ctgtaaaata
    15301 ctcagttaac actaattctt ggcgaatagt ttgggcaatt ttatctttca cttgtgctaa
    15361 ctcaatcact tgctcaggtt tacgctccaa tactttgatg atatggtaag cattatccac
    15421 tttcaccgct gcactcatct ggccggcagt taaatttgct acagcatctt caaaagcttt
    15481 cgggaaagtg ccagcttttg cccaacctag atcaccacca ttatttgctg ataaagtatc
    15541 gctagatttg ttttttgcca aagtagcaaa atcttcccca tttttgagcg cttgctcaat
    15601 agcctgtgct tccgcttcac tagcgacttg aatatgagct aaatgggctt cacctttagt
    15661 tacataatcg gctttattgc gatcatagta agtttgaatt tgctcattgg taatctcaac
    15721 tttgctttcc acatcttttg gagaaagagt aacgtactca accgctaatt tttcaggtgc
    15781 taataattta gttttatttg cttcgtaata ggctcgcaat tcttgctcgg aagcggtctg
    15841 attttccatt tcttttgcaa ctgaaaattc ggctaaacgc acttcacgtt gttgcaacag
    15901 taattttgct aacaatgcct gctgtgccgg tacattaaaa tcactattga taatcccctc
    15961 ttgtagctgg gattgcaaca taccttcctg cacaatcgct gcatagccat cggcacttaa
    16021 attattgtgg cgtaatgttt gttggtataa ctcgttactg aatttaccat cttgttgaaa
    16081 catctggctg tttacaattt cagatttgat ttgatcagca ctaataccta gttttaactc
    16141 ttttgcatac tggcgcagaa gctcttcatc aattaatcca tttaataccg attgattaaa
    16201 ttgagcagca tactccgggc tatccattaa atcccaaaag cgactcccca gttcagcatt
    16261 taatctattt tgctcacgat taagcgtgtt attaaataat tgctgactaa tttcttcccc
    16321 atttactttc gctacagaat tatcttgtga aatcaatcct gtcccaattc caccgattac
    16381 aaatgaaata gagactaatg caaaaataat tttaaagacc ggcccatttg tccgctcgtg
    16441 cattttttca atcatttaaa aattcctaaa ttactcaaaa attgtcgctg attatactct
    16501 ttctcaaatg agaaataaac ttgcaaattt ttattgaaat ttaaccgctt tctctttaaa
    16561 attcacagtc cctgtcgtag ctgagttaga gatcggctat tgatgtatta tcaaccctta
    16621 acaaaaggaa attaaaatgt ctctaagcgt agaagcaaaa gcaaaaatcg ttgctgaatt
    16681 tggtcgtgat gcaaaagaca ctggttcttc tgaagttcaa attgcattat taactgcaca
    16741 aatcaaccac ttacaagcac actttgctga gcataaaaaa gatcaccacg gtcgtcgtgg
    16801 tttattacgt atggtttcac gccgtcgtaa attattagac tacttaaaac gtactgatct
    16861 tgctaaatat tcggaaacta tcgcacgttt aggtttacgt cgctaatttc aaatattaga
    16921 tatgagagcc gagctgaaaa gttcggcttt tttataaatt ttattcgagg aaaaaatatg
    16981 gcttttgcgt cattatttac attattagac gatattgctg ccgtgcttga tgatgtatcg
    17041 atcatgacta aagtggctgc taagaaaaca gcaggcgtaa tcggtgatga tcttgcctta
    17101 aatgctaatc aagtcagtgg aaagaatgtg gtgccagaac gagaactacc gattgtttgg
    17161 gctgtagcga aaggctcatt aatcaataaa gtgatcttga ttccactagc gttgctgcta
    17221 tcggtctttt taccgcaggc tattatcccg ctattaatga taggcggtgc atatttatgt
    17281 tttgaaggcg tagagaaatt actccatcgt ctattacata aaaacaatca agctcattct
    17341 gatgaaaccg aaaccctttc tgaaaaagat aaaattaaag gtgcaattcg caccgatttt
    17401 attctatcag cagagattat cattattgcg ttaggtgttt tgcaagactc ttcaacccta
    17461 acccaaattt tatctctctc cgctatcggg gtcggaatta ccctgtttgt ttatggctta
    17521 gttggattaa ttgtaaaact agatgatatc ggtttatggt taatgcagaa aaaaagcaca
    17581 ttctcacaag cggttggaaa aggcttatta tttgcaatgc cgtggtttat gaaaggactt
    17641 tctgtgattg gtactattgc gatgttctta gtcggtggtg gtatttttac ccataattta
    17701 ccaatgattc atcacttcgt agaacaattc ggtatctctc cccatttttc tactctggtt
    17761 gattttgcag tgggtattgt ggttggtatt attgcatgct taattatttt acctttgatg
    17821 aaattatttt ctaaaaaggc gcactaatcc ccaaaagcgt agctttggtt aaagctagct
    17881 ttttatctct tgctataaaa aaatagcagg tttcaagcct gctatttttt taattattat
    17941 aatgagttag actcagtggc tgtttgcggt aaggctaatg gctcattaac tttagactga
    18001 gtagccatat tcacctgttt gagattttcc tcacgaatac ggtttgccat taatgtatcc
    18061 cccatctgct ctgccacgtg cagtgccata atacgatcat cagcaacaca ttcatcatga
    18121 gccaataaca attcaaactg agacttcgct ttttggtatt gcccatctcg tgtataaata
    18181 tagccaagcg ctctagcata atcatcggta tatttaacat tcgctttatc tgcccgtttt
    18241 gctaatactt ttagtagctt actgtcagaa tcaatttgta aacgggttaa ttgcacaaat
    18301 aaaccttgta attgctcatc ttcaaatttc ttcaacgttt ctaaagcaat ttcttgtgca
    18361 gattgatgat cgtcactatc aattaaacgc ttgatgacac cgacacgact atacaccgat
    18421 ttacgacgac gatttggttg gttttcccac caagaaagca agccttcctg cccttcttcc
    18481 tgtaaacgct catcttgtaa accatcatca acgaaatact ctaactcagc atactcttct
    18541 gcagttaaga aattacgttg gccgatttca actaataatc tatctaacgc aacataagct
    18601 ctggattctt tataaatttg aatcgctaag cgtaatacct catcgctatg aggtgcaagc
    18661 tctagtaggc tatcaatcgc agttcgggca gccggtaatt ttccttgttg taataaaatt
    18721 cgggttcgta ccaactccac tgcaacatta ttcggtccag ctatttcagt tgccttaatt
    18781 aaatatttat ttgcagctaa atcatcacca ttttgctgag cagcttccgc cgctttaatt
    18841 aaattcagta caggctcatc tgcatgtttt gcatttttac taaagagttt ttccgctttt
    18901 gagtaattcc cttcactcat acgcattaaa ccttccagtg tttcttgctg agctttttta
    18961 tgcttacgag ttgagaacca gttataagct ccattactca tacggcatat tttagtgaca
    19021 atccattcaa gtaaataaac taccgccatt gccaacacaa aaaaaaccac aagcattaca
    19081 atgctcattt caatcacggt agttgctgtt tcaattctga cataaccttg atttccggct
    19141 aaataaggcc cagagattag tccaactaat aataaaagca tcaaaaagag cgttctaaac
    19201 ataatctatt ctccttttta ttattgtgct gaaagaggca tcgcatcttg ctctgctttt
    19261 acaggctctg cttgctctaa ttctttttca gcttttattt cgactttctc tattttttca
    19321 ggggttttat taagttgctg agcaatcacc tttaagcttt gtaatgaagt tggagcatcc
    19381 acataaatag tttgttctgc caactcatct agctctttca agaaatgttg cacattttca
    19441 tttgaagttt caaaataact tcttacccaa gagcctaccg tttgtaacga ttttttataa
    19501 agttcgcttt gctggcgagg aacagctaaa atcgcaattt gtaaacgcaa gcgaatgttt
    19561 tcacgcaaat aaatttcttg attcggtgca acaaaggctt tctcatctgc tgcattacgt
    19621 ttcgatacac gaataaaatg atctaaaaat gaagcagcac ttttttctaa atttttctcc
    19681 caatccgcaa gagaatcact tacttgccca tcttgtttgc tatttgaagc ttgttcactt
    19741 tccaaaatcg gcaaatcatc taatttattc gctaaatttg cgacacgctg cattaaggca
    19801 ttttgatcga tctgatgcaa tgcggttaat gtatttaaat cagttttgat tgcctcacga
    19861 atgtgaatcg tattcggtgc ttttgataaa acttgatctg cctctaacaa taaatttttc
    19921 gctgtttcaa tgtcattatc taacaccact ttacgagccg cattattcaa taggaaatct
    19981 gcctcagata atagccagaa tgtgttatcc gaaccagagg tattatttag cttttgcagt
    20041 tgaagctgca aactactaat ttgctgggta taaccatttt gggctgtttc taaagcttta
    20101 atccgttcta aagctttttg atattccgtg accaattcgg caatttgtgc tttttcattt
    20161 tcgaaatttg gcatctcaac catagtttga gtagtaggct gatttgcttt agcagatact
    20221 gcctgaattt gagattcaac ctctgcaaac tttttatttg ccatataatg accagctccg
    20281 ccaaccgcta aagccactaa tagtgcaact aatgccaagc cctttccgcc cgatttttga
    20341 acaaccactt gttcttttgg cgctttttgc atttctgttt gaatatcttt ctctatagct
    20401 tcgttcacta catcttcctc aatctctttt tttgcaaaag atcccgctga atcgaccgct
    20461 tgttgtgcct cttctaccac cttttcagct gaatgctcta aatgttcagt tactttttta
    20521 gatcttgaca tactcgccac ctctagttag atttgcccac tttaaataat aatgtattca
    20581 tcaaagttac attatcggct ttatccgata ccctaatctt atcttcttgc cagcccattt
    20641 gtttagctat ctttgcaatc cgccggctca ctacaaccag atcacattca aataaccatg
    20701 ctctacaatc tgctttcgct tgttcataaa gtgatcttaa aatttcacta ctggtgatca
    20761 caatagtatc tactcccaag cgtttacata agctgatttt ttcgggaata tcatcggtaa
    20821 ccggctctct acgataacac tccaaatatt gaatagttgc cccacgcaag actgcagttt
    20881 cagcaagtag ctcacgccca gaatcggctc ttagaattaa aatagtttta tcagttagat
    20941 tctgcatttc aggtaatgcc aaaaccccct cgctattttc aaattctatc ggataaatga
    21001 ccgcttgttc agctttttct gttaaatatt tcgcagtccg ttgccctacc gcaaaatatt
    21061 tcaaatctga acgaaaatgg aacccggtat ctactaatgt ttttgcagca tagtccactg
    21121 cattcggcga aacaacaaat acataatcgt ctgattttag ccgagaaata gccgaaggaa
    21181 gcaaaggtaa ttctttaccg gcttcaatcg taaatagcgg ttgatgaata gcaaaaattt
    21241 gctgttcatt caacatatct accaattctt gcccccgact atccaggcgt gtgaccaaca
    21301 cattcattat tgtacgtttt cgttataaac cgcagctaaa attttatctg caccttgagc
    21361 aagcaactgt tccgccacca aaatgcctaa ttgctccgcc tcttgcttat gtccttttgc
    21421 cgaagcccga ataatttgtg agccatctaa cgatccaact aacgcattaa gcgttaattc
    21481 atcgccctct aatgtagcat aaccaccaat cggcacttgg caaccgcctt gcaaacgggt
    21541 attcattgca cgttctgcca tcacgcaaca agcggtcgaa ctatggttta attttgcaat
    21601 gtagttcaaa atccgttcat cattggctcg agtctcaatc cctactgctc cttgaccagc
    21661 tgcgggtaat gattgttcca cagaaatata gctacggatt cgctcttgca agcctaaacg
    21721 aattaagccg gcagaggcta aaataatcgc atcatactcg ccattatcta atttgcttaa
    21781 gcgagtgccg acattgcctc gcaatgattt aacctctaaa tgcggatatt tcgccattaa
    21841 ttggcactga cggcgtaagc tcgatgtacc gaccacagca cctttcggca aatcttctaa
    21901 cgaatggtag ttgttcgaca caaacgcatc acggggatct tcacgttcac aaatcaccgc
    21961 aagccccaag ccttcgggaa agctcatcgg cacatctttc attgaatgca ccgcaatatc
    22021 agctcgattt tctaaaaggg ctaattctaa ctctttcaca aacaagcctt ttccgccaat
    22081 tttggctaat ggggtgtcta aaataatatc gcctttcgtt accatcgtaa ccagttcgac
    22141 agataattgc ggaaaatgtt tttctaattc gctttttaca aaatttgcct gccataaggc
    22201 taacgggctt tgacgggttg caatgcgtaa aatatctttc ataaattcta aaattaaaac
    22261 attgagttaa tgaattatcc taccactttt tagctgaact gccaaaaata atcgtggatt
    22321 tcgctttgca tttaatcaaa aatccgactt tttctcaaaa tgtatcaatg tc
//
LOCUS       DANLXK010000028        21953 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.028, whole genome shotgun sequence.
ACCESSION   DANLXK010000028 DANLXK010000000
VERSION     DANLXK010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21953
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(3..275)
                     /locus_tag="PXD88_000894"
     CDS             complement(3..275)
                     /locus_tag="PXD88_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL6280488.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK"
     gene            complement(411..1001)
                     /locus_tag="PXD88_000895"
     CDS             complement(411..1001)
                     /locus_tag="PXD88_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL6280489.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            complement(1148..2212)
                     /gene="hemE"
                     /locus_tag="PXD88_000896"
     CDS             complement(1148..2212)
                     /gene="hemE"
                     /locus_tag="PXD88_000896"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL6280490.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            complement(2310..2867)
                     /locus_tag="PXD88_000897"
     CDS             complement(2310..2867)
                     /locus_tag="PXD88_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL6280491.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            2946..3236
                     /locus_tag="PXD88_000898"
     CDS             2946..3236
                     /locus_tag="PXD88_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL6280492.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            3341..3532
                     /gene="ssrS"
                     /locus_tag="PXD88_000899"
     ncRNA           3341..3532
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXD88_000899"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            3534..4112
                     /locus_tag="PXD88_000900"
     CDS             3534..4112
                     /locus_tag="PXD88_000900"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL6280493.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQVSHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            4109..4897
                     /locus_tag="PXD88_000901"
     CDS             4109..4897
                     /locus_tag="PXD88_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL6280494.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            4991..6505
                     /gene="putP"
                     /locus_tag="PXD88_000902"
     CDS             4991..6505
                     /gene="putP"
                     /locus_tag="PXD88_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL6280495.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            6657..7823
                     /locus_tag="PXD88_000903"
     CDS             6657..7823
                     /locus_tag="PXD88_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280496.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(8068..8940)
                     /gene="rsmI"
                     /locus_tag="PXD88_000904"
     CDS             complement(8068..8940)
                     /gene="rsmI"
                     /locus_tag="PXD88_000904"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL6280497.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            9014..10735
                     /locus_tag="PXD88_000905"
     CDS             9014..10735
                     /locus_tag="PXD88_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL6280498.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            10710..11081
                     /locus_tag="PXD88_000906"
     CDS             10710..11081
                     /locus_tag="PXD88_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL6280499.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            11087..11671
                     /locus_tag="PXD88_000907"
     CDS             11087..11671
                     /locus_tag="PXD88_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL6280500.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            11681..12271
                     /gene="yraP"
                     /locus_tag="PXD88_000908"
     CDS             11681..12271
                     /gene="yraP"
                     /locus_tag="PXD88_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL6280501.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            12561..12752
                     /locus_tag="PXD88_000909"
     CDS             12561..12752
                     /locus_tag="PXD88_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280502.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            12745..13032
                     /locus_tag="PXD88_000910"
     CDS             12745..13032
                     /locus_tag="PXD88_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6280503.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(13179..14321)
                     /gene="argE"
                     /locus_tag="PXD88_000911"
     CDS             complement(13179..14321)
                     /gene="argE"
                     /locus_tag="PXD88_000911"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL6280504.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(14325..15116)
                     /locus_tag="PXD88_000912"
     CDS             complement(14325..15116)
                     /locus_tag="PXD88_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL6280505.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            complement(15132..15737)
                     /locus_tag="PXD88_000913"
     CDS             complement(15132..15737)
                     /locus_tag="PXD88_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL6280506.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            complement(15758..16666)
                     /gene="rdgC"
                     /locus_tag="PXD88_000914"
     CDS             complement(15758..16666)
                     /gene="rdgC"
                     /locus_tag="PXD88_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL6280507.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            16743..17561
                     /locus_tag="PXD88_000915"
     CDS             16743..17561
                     /locus_tag="PXD88_000915"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL6280508.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            17558..18712
                     /locus_tag="PXD88_000916"
     CDS             17558..18712
                     /locus_tag="PXD88_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL6280509.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(18772..18984)
                     /locus_tag="PXD88_000917"
     CDS             complement(18772..18984)
                     /locus_tag="PXD88_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL6280510.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            19312..19848
                     /gene="proQ"
                     /locus_tag="PXD88_000918"
     CDS             19312..19848
                     /gene="proQ"
                     /locus_tag="PXD88_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL6280511.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNL
                     PKASEEKLAALADKFGRK"
     gene            19934..21946
                     /gene="prc"
                     /locus_tag="PXD88_000919"
     CDS             19934..21946
                     /gene="prc"
                     /locus_tag="PXD88_000919"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL6280512.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
BASE COUNT         6279 a         4365 c         4849 g         6460 t
ORIGIN      
        1 aattatttta ctaaatcttt taatgcttta cctgaaacga atgcaggtac tttagctgct
       61 gcaattttga tctcttcacc agtttttggg ttacgaccag tacgtgcttt acgctcattt
      121 actttaaaag taccgaagcc gattaattga acagcgtcgc ctgcttttaa gcttgcagag
      181 attgcatcaa gagttgcttc taatgctgct ttagcatctt tcttggttaa gtttgcacca
      241 gcggcgatag catcgattaa ctcagttttg ttcatagttt tatcctctaa gatatgtgtt
      301 tttaataaat gacgtaaaac gtctgagaag ttattgaaac cttgcgatag cttaattcaa
      361 agttaagatt tctcaaagta ttattaagca agattttgca aatatcaatg ctattggtta
      421 atatttaacc cgatattact aatcccgctg cttctgattt catctttaag ttcaaaaatg
      481 agatcaagat cacgtttttc acattcgttt agcaagcggt atatttgcca ctgtacgtcc
      541 agttcttctt gaatttcttc agaattcttt agctcttgct cgttcagttc tttatcttgt
      601 tgcatttcca aatagctggc aactgtgcct aatgaaattt ggctgatgcg gattgcttgt
      661 tcaagggttg aaccagcgat aatactgtga agaagttcag aaagggcttc gcaagcttcc
      721 tgtgcaggta agacaccaaa aaacgcatat tcgttcacat caggaatgat ttcttctaat
      781 ttttccagtt ggttatcgaa attaattttt gcccctttta tggttaaata ttcccagact
      841 aaatttaaaa tattttggaa taccttagct ttttcaggct gttcggttac ttcacaaaaa
      901 agctgatagt tggggtacat tctttcgcat aggcacgcca taaatgtggt gttttgccaa
      961 ggctcgaaac gttccatgcg tttatgaatc gggtttctca ttgtatttcc ttctttattt
     1021 ttcagagaga agggaacgat tttgcaaaat tctgtataaa aatgaccgct tgcccctctc
     1081 cctgattttt cttctgaaca aagaaaaatc tgtccctctc ccacaaggag agagggcatt
     1141 ttatccatta tttatgatac tgcttcgagt agttgtgaat cgcatcaaca aacactttcg
     1201 ggctttccac cggcacatct aaatgaatgc cgtgtccaag attaaagacg tgtccgctgc
     1261 cgttgccgaa gccggcaaga atgtttttta cttcttgttc gattcgttca gggcttgcat
     1321 acagcacgct tggatccata ttgccttgca acgcaacttt gtcgccaata cggcggcgag
     1381 catcggcaat atcgactgtc caatctagcc caacggcatc gcagcccgtt tctgcaatcg
     1441 cttctaacca taagcctccg cctttggtga atagggtaac aggcacttta cgtccttcat
     1501 tttctcgaat taagccgtcc acaattttgt gcatatagtg taatgagaag gctttgtaat
     1561 cctcgtgagc caatacaccg ccccaagtgt cgaataccat caccgcttga gcaccggctt
     1621 tgatttgggc atttaagtat aagatgacac tgtcagctaa cttgtccagc aatttgtgta
     1681 gaatgtgagg ctcagcgtaa agcatttttt tgattttggt aaatgctttg cttgaaccac
     1741 cttccaccat ataggtggcg agtgtccaag ggctgccaga aaaaccaatt agtggcactt
     1801 cgcctttcaa ttctcggcga atggtacgca ccgcattcat tacatattgc aactcgtctt
     1861 ccggatcagg aatcggtagc tgattgacat cattgaggct tgccaccggg cgggcaaatt
     1921 tagggccttc acctgcacca aaacttaaac ctaatcccat tgcatcaggc acagttaaaa
     1981 tatcggaaaa taggatagct gcatcgagtt cataacggcg tagcggttgt aaggtgactt
     2041 cacacgctaa atcagcgtta cggcagagtg acataaaatc gccggcttct gctcgggtgg
     2101 ctttatattc cggcaaataa cgcccggctt gacgcatcat ccagaccggg gtcatatcca
     2161 caggttcacg caataacgct tttaaatagc gatcgttttt taattctgac attggttttt
     2221 cctttgattt tggtaggggc gaaatatttt tcgccccgca taatatattt gcaaaataga
     2281 gatgaaattg aaccgcttgt atttattcat tagtgtaatg gtggcttttc ttcggttttc
     2341 ggcacgccta aagcaaaatg gctgtgcaag aataaggcta aaactcgcag atattccaac
     2401 acttcttcgc cagcctccag tagttcctcg ttattatcat cgtcactgta gcctagtttg
     2461 gcgatttcat ctaaatcatc gattgcctcg ccaacctcat cggtttcttg ttgtaattta
     2521 ggttgagcaa cgccaagtcc aagtaagaaa ctgtttgtcc attcggagat accatcagct
     2581 aaggcaaaac catcttcttc gttttgtggc aaccaaaggc taaacagcgt gttggcttct
     2641 gaaaagcttt cacttaattg ctgataaaaa tcggttaaag tgtttaacgg ctcgatggaa
     2701 aatgcgtgtc cgtcattggt aaattggtag gtgagggttt tccaagactc atcttgaata
     2761 ccgccggcaa ttaaaccgca taaaaaaccg tgaaactctg ccggtgtatc atcaatttgt
     2821 aattgtgata ccagttgttt aaattgttgg gaatctgtga tagccataat gggattattt
     2881 gtgattttgc taaagaatgg cataatatag caaaaatttt gcgattaagt gaggatttcg
     2941 tatttatgtc ggcaaataat atcgaactac agatttttgg gcaggtttta cgcttgcaat
     3001 gccctgttga acagcaagag catttactgg cttcagcaca gcgtttggaa gagcgtgtgg
     3061 tggtattgaa agagcagtcc ggcattattc agcttgaaaa agtgttagcg attgtggcac
     3121 tgaatttaaa ttatgaactg gagcaagccc aacgccaaaa tgcagaaaat aaaaatgtgt
     3181 tggtggcttg tattgagcag ttagataatt cgcttggcaa atttcaatcc aattaggtaa
     3241 tttttaatcg aattgattag gaatagagcc aaaaagattg agaatttgca ttttgtggga
     3301 ttaaatacta ggaaaaatca tcaaattccg ttactataag tcttgcctgg ggtgtgcgtt
     3361 acgagttacg tccctgagcc gataatttga aactttgagt tggacatcta acgctggtga
     3421 gcaagcttac cctaatttaa ttaggagtaa gaagcctaaa agcagttaag tttgactccc
     3481 ttgaaccgac tggttcaagg accattactg gtagcggcat ctcgggtctt tatatgaatc
     3541 aatcatcttt aaccgatctt cgtagccaat tacggcaatc aatgcggctt aaacggcaaa
     3601 gtttaactgc cggtcagcaa actcaagcag ccgaatccat tattcctcaa gctctttcat
     3661 tgattgaatc ttaccaagtc tcacatattg ccttttattt gccttttaac ggtgaaattt
     3721 ctcctattcc tttaatggaa caattacttc aacagggcaa aaagctgtat ctgccgctgt
     3781 tgcacccttt tacaagcggt caattattgt ttgtaaatta caattgcaaa actattctaa
     3841 aatttaaccg cttggggatt caagagccga tattagatgt tagaaatatc cttccgttgc
     3901 aagaattaga gatgattttt accccacttg ttgcttgtga taaagccgga aatcggctgg
     3961 gaatgggagg tggcttttat gatagaaccc ttgctcaagc acctcatctg attagtgtcg
     4021 gtttggcaca cgaatgtcag caagtcgaac aattaccgat tgagagttgg gatatgccgt
     4081 tagatcatat tattttggga gcagccaaat gaatgcaaag aaagaaaagg aatcgagtgg
     4141 aaatcaaagt ttaattcgtg gcttaacact attggaattg ttagcgaaat tcccaaacgg
     4201 ctgtccgctt gcccatttag ccgagctttc ggggctgaac aaaagcacgg ttcaccgtct
     4261 gctacaaggc ttacaacaag agggctacgt ccgccctgca ccgactgcgg gcagttatcg
     4321 tttaaccacc aaatgtttgg caatcgggca gcgagcctta agttcgatta acattttgca
     4381 tattgccgcc ccacatttag aagccctaaa tttaacctta ggcgagacgg taaattttgc
     4441 gatgcgggaa aacgatcacg ctattttaat caataaatta gaagctacca ccggaatgat
     4501 gcgtacccga gcctatatcg ggcaacaaat gcaactctat tgctcgggaa tgggaaaact
     4561 gtttcttgct tatggttcgg cagattacat tccacaatat tggcagacta aatcggacat
     4621 cattcaaaaa ctgacggtca ataccatcac cacgattgac ggaatgcaaa ccgagctgga
     4681 aaccattcgc cgtcaaggtt ttgcaatgga taacgaagaa aatgaattag gggtttcttg
     4741 tattgcttgc ccgatttttg atcaccaaca aaaagtccat tatgcgattt ctgtttcgct
     4801 ttcaactgct cgtttaaatc agctggggcg ggaaaatcta ctaccggcta ttcaagaaac
     4861 agcagaaaaa atttcagctg agctgggcgg acggtaattt tgtgttgcca ttttgattat
     4921 ttcaggtaat cttttaccct ttactcactt taatctttat acaataagaa atcttgagga
     4981 ttcattaata atgtttggtc ttgatccaac aacaattatg tttgttgtct atattctagg
     5041 aatgattgcc atcggcttta ttgcctatcg tgttaccaat aacctttcag actatatttt
     5101 aggcggtcgc cgtttaggta gctttgtgac cgcactttct gccggtgcat cagatatgtc
     5161 cggctggttg ctgatgggat tacccggagc cgtttatgca ggcggtttga tcgaaggctg
     5221 gatcgcaatc ggtttaacta tcggtgctta tctaaactgg aaattagtcg caggcagatt
     5281 acgctcgcat acagaacaca gtggcgatgc cttaacctta cccgaatatt ttcataaccg
     5341 ttttggcgat aaaacccgtt taattaagat tttatcagcg gtcatttttt tactcttttt
     5401 tgcaatttac tgtgcatcag gcgttgtggc cggtgcgagg gtatttgaaa acttatttgg
     5461 cttaccttac caccaagcaa tttggtatgg ggctgttgct accattcttt acacctttat
     5521 tggtggtttc ttagcagtaa gttggacgga tactattcaa gcttcattaa tggtttttgc
     5581 cctgattctc accccgtttt ttgtgatgta taacttaggt ggttttgatg aaatgcaagc
     5641 cttaatcgac cgtgcaggcg agatggcaca aaaagactac aacgacattt tcaccggcac
     5701 cagcgtatta ggcattatca gcttaatggc gtgggggctg ggttatttcg gacaaccgca
     5761 tattgtggtg cgttttatgg cggcagaaag tgtgaagtct cttgaaaatg cacgccgtat
     5821 cagtatgact tggatgatta tctgcttact gggggcaata ggcattggtt attttggtat
     5881 ggcatatttc tttggcaacc cggagcaagt cggcaatatc agcaaaaatc cggaacaaat
     5941 tttcattgaa ttagctaaat tgttatttaa cccttgggta gccggcattt tattatctgc
     6001 cattcttgct gcggtaatga gtaccctttc cgctcaatta ctgatttgtt caagtgcgat
     6061 taccgaagat ttatacaaag gcattttacg ccctcaagcc tccgataaag aactggtttg
     6121 gttaagccgc ttgatggtgc ttgcggtggc agcattagct atttatattg cccaagaccc
     6181 ggacagcaaa gtatttggct tagtgcgtaa tgcgtgggca ggtttcggct cggcatttgg
     6241 gcctgtggta ttgctttcac tattctggaa acgtatgaac ggttttgggg cgattgccgg
     6301 aatgctgacc ggtgcgttaa tcgtgcattt ttggggcgat attacactta agctcgcctt
     6361 accggaaatt tactcgatga tcccgggctt tattgctgct accctaatga tcattgtggt
     6421 atcacttatc acgccaatgc caagcaaagc cgtattagac acctttgacc gtgctaataa
     6481 ggcctatttg gcagaagtga aataataaaa tttggcttaa ggtctcctta agccattttt
     6541 ttacaaaaaa tttatcaaaa attattcaca atccttgtaa ggattgttca cagcttcgct
     6601 cccgttggca gagccaacgt tcaaaaagcg atgctttttg tgaccgattg taagctatga
     6661 ctaacctcct actcgctatt atttatctct cttttatcag ccttgggttg cctgatgcaa
     6721 ttttaggctc ggcgtggccg tcaatgcacc aacagcttgc tgttccgctt tcctatgccg
     6781 gtgtggtctc gatgattatg tcgattggca ctattacctc tagcttaatg tcggacaaac
     6841 tgacctacca tctcggcaca ggcaaagtaa tggtcatcag cgttgcctta acggctttag
     6901 cattgtgggg cttttcaatc agtgatgctt tctggatctt atgtttatgg gcaattcctt
     6961 acggcttagg ggctggagcg gttgatgcgg cgttgaataa ctatgtagca gttcactacg
     7021 caagccgcca tatgagctgg ctgcattgta tgtggggcgt tggagcttct atcgggccgc
     7081 acattttagg ctacgcctta ttgcaagggc gaggctggga ggcaggctat ttcaccattt
     7141 caatgttaca aatcgggcta acgctaatgc tgttttgctc actgcctttt tggaaattac
     7201 gcaagcagat taccgctgaa atcaaccatt cggcaaaacc gatgagctta aaagaaacgc
     7261 taaaaattcc gggcgtgaaa tatggcattt tagctttttt tggctattgt ggcgtagaac
     7321 aaaccgccgg actgtgggcg agtagctatt ttgtaatggt taaagatgtc ggcttagaac
     7381 aagcggctgc gttcggcagt attttcttta tcggcattac cgttggcaga ggcgtaagtg
     7441 gcttcttgac gcttaaattt agcaacagac aaatgattaa acttggttca gccttgatct
     7501 tagtcggcat tgcgatactg tgcttgccgt taggcaaata tgttacgctg gcaagtttaa
     7561 ttattatcgg gctaggttgt gccccgattt tcccgtgctt aattcattcg acccctgcgt
     7621 ttttcggcga ggacaagtct caatcggtga tcggcgtgca aatggcaagt gcctatatcg
     7681 gcgtcctgtt attgccaccg attttcggct ttattgctaa tgctatcagc attcaattat
     7741 taccgcttta cttgctgttg atgtttgcga ttatggcata tgcttatcgg aatttagtgc
     7801 gagaaacttc cccctctccc tgatttttct tctgaacgaa gaagaatctg tccctctccc
     7861 acgagtggag aggggtcgac aagcgaataa tttagctctc tccccttatg ggacaaatgt
     7921 ttacatttga acgttggctt tgccaacggc tccgaaggag cgagcgtagc gagtattgag
     7981 accgggaaat gtttcgttca gaaacatttt tcagagagag gggagtgcca atctgcaaaa
     8041 aactcacaaa atctgaccgc ttgtctgtta ctcaaaatgc tccaatccat attgatacag
     8101 ggcatttttc ttatagccga aggtttctgc cacaatggca gcggcttttt taagcggaag
     8161 ttcttggcag agtaatgtca gtaatttgat cgcttggctg gaaaaggctt cctcactact
     8221 ttgcggttta ccttcaacca ccagaacaat ttcgccttta attcggttgc tatcctcatt
     8281 tagccattca attaagttac ccagttgatc tccataaatg gtttcccacg ttttcgtgat
     8341 ttcacgcgcc attaccacat agcgatcttc gccaaaaaca gtctgcatat cggcaagagt
     8401 gtctaaaata cggtgggtgg attcataaaa aatcagtgtg cgaggctcgt tttcaagctc
     8461 ggtaagttta tcgcaacggg attttgtttt tgccggtaag aacccttcaa aacaaaaacg
     8521 gtctgaagct atgcctgaag cacataaggc agtaacagcg gcacaagccc cggggatcgg
     8581 cacaactttt accccggctt ggcggcaatg acggacaaga tgaaagcccg ggtcgctaat
     8641 cagtggcgtt ccggcatcgg aaattaacgc aatgttttcc ccttttgcta atttttcgac
     8701 taaaacgacc gctttctgct gttcattatg gtcgtgcaag gcgaaaaacg gttttttaat
     8761 gccgtagtgg ctcagcaata aaccgctgtg gcgagtgtct tcggcggcga ctaaatcgac
     8821 agatgaaagg gtgtctaacg cccgttgggt aatatcgcct aaattgccga taggcgtggc
     8881 aacaatatat aaaattccgt aatttgggtt gattccagat gaattttgtc tgtttttcat
     8941 ttgcttttag ctcgtttgat aagtaagatt tcacattaaa tttagcacat tatattctat
     9001 tgaggatctg acaatggcaa ctattttaaa ccatacaatg aaaaaggcat tggtgccaac
     9061 ggcgattgca ttattcattt ctgcctgtac atcggtaaat cctgtcaccg aatccattaa
     9121 aaatgaagcc tattcaagct cggaattcta tattaataaa gcagatcaaa ccaaagaagc
     9181 ggaagataaa atttcgtatc aacttttagc tgtacgcaaa ttaattgatg aaaataagga
     9241 atatgaggct caaaatacct ttagtgaaat tctgaccgca gagatgaacg aggtgcaaaa
     9301 gttagagtat gccttggttt ccgcccagct tgccgcctta caagggaaaa acgagcaagc
     9361 aacaagccaa ttaaaagcca ttcaagatcc gctattaagt tcggcacagc gtttgcgtta
     9421 tattcaaacc caagcccgta ttgctgccaa tcagaaagat gtgattggca ttgtgcgtgc
     9481 aagatcgcaa cttaacaatt tctataaaat gaaccgtgaa cgccaagaaa ataacgatat
     9541 tatttggcaa accttgcgtg atgcaaatcg aggaatgctg gaaaaaactg tgcctgaagc
     9601 gggtgagatg gagcttgctg gttggttggc attaattaat atctataatc aaaatgtgac
     9661 gacaccggca caaatgccac aagcaattaa taattggaaa gcccaatacc cgagccatag
     9721 tgcggttgcc gtaatgccaa cggaattaca aggggtgagt aatttccaac aaacccagtt
     9781 aaacagtgtc gcattgctat tgcctctaag tggtgatgca aaaattttgg gtgatattat
     9841 caagcgtggt tttaatgatg ctaaggctga tgactcaacc gcagtgcaaa cttttgatac
     9901 cgattcatct gatgttaatt ccttaatttc acaggcaaaa cagcaagggg caaatgtgat
     9961 tgtcgggcca ttgctcaaat ctcgtgttga tgaaatgcta cttagcccag aaatccaaaa
    10021 cgtgaatatt ttggcactga atgccactga aaatgtgcgt aatattgctc aggtgtgtta
    10081 ctacggttta tctcctgaat ctgaggcaca atcaggggcg gaaaaaattt atcaagacgg
    10141 taatagtgtc gctatcgttg cggcccctca agatgactac ggcaaccgct cggcagaagc
    10201 ctttgccaaa cgctggcgtc agcttaccaa tagcgatgct gatgtgcgtt actacaacca
    10261 accgcttgat gccgttgccg ctattcaaaa tgcaggtgtg agcaaagcag ctttatatat
    10321 tttggggaat gccgagcaag tattagaaat taaacaaggt attgatagct caaccttaaa
    10381 agatcgttta gcgatctata cctcatctcg cagtaattcg ccaaataacg gcattgattt
    10441 ttacacttca atggaagggg taaaatttag tgaagtgcca ctgttagctg atcaaagttc
    10501 tagtgaatat aaaaaagccg agaatttagc caatagcgat ttctcaatga tgcgtttata
    10561 cgcaatgggg gctgatgcgt ggtcattggc aaccaaattc aatgaattcc gccatattcc
    10621 gggctacaaa atttcaggtt taaccggtga gttaaaagcc ggacaacatt gtaatattga
    10681 acgtagttta tcttggatgc aatatcgcaa tggagctatt caacaagctt attaataaac
    10741 gggaacaagg ctcgttttat gaacaaaaag cccgagtgtt tttagaacag caagggcttc
    10801 gttttgttgc cgctaaccaa gcatttaaag gtggcgaact ggatccgatt atgcaagacg
    10861 gacaaaccgt tgtgtttgta gaagttcgcc agcgtaaaag caaccgcttc ggttcagccg
    10921 ttgagagtat tgattaccgc aagcaacaaa aatggcaaaa tgccgctaat atgtggttgc
    10981 ttaaacaaaa ccaaagttta gaaactgcaa attgccgttt tgatgtggtt gcttttgaag
    11041 gaaaccaaac gcctgtgtgg attcccaact ttttaggtta gaaagaatgt taaataaaat
    11101 ccaagataga tttaccgaaa gtattcaaac ccaaatttcc gcctctgagc tattgccggc
    11161 taaattaagt gaagcggcaa accgcattgt tgcctgtttg ttgcgtggcg ataaagttat
    11221 cgtctgcgga cacggtcgct cttacggtaa tgccgaatta ttggtcagcc acttacttca
    11281 ccgttatgaa ctggcaagac cgagttttgc tgccgtacaa ctgcaattaa gcggtgtatt
    11341 ggcaggagtt gtggcacaag ataacgagtt agaggctgtt tataaaaaac agttgcaggc
    11401 ggttgcaaaa gagggtgatc tcttcattgt tttttcgcct gtgggtaatg aagaatgtat
    11461 attgcaagct attcatacgg cgaaaaatca acatttagat ttagatatta ttgctttaac
    11521 aggcagtaat aacgaccaca cactcggctt attagatgaa agtgatattg aaatttcagc
    11581 cccttcaacc aatcaactga gggtgattga aagccatcat ttttatgtga atttattatg
    11641 tgaacttatc gaccatttac tattttcgta aggagagatt atgaacaaat tagcaaataa
    11701 actattaaag ggcagcctat tagtattagg ttttatctct ttacaaggtt gtatcaccac
    11761 ggcggtggtg acttctgcgg cggttgcaac taaagtggcg acagacccac gcaccaccgg
    11821 cacgcaagtt gatgatgaaa ttttagaaga aaaagtcgct tacaacatta ataaagacga
    11881 gcaaatcaaa caagaagccc gcattaacgt ggtggcttac aacggcaaag tgttattaat
    11941 cgggcaagca ccaagtatgg acgtagtgga aaatgcgaaa aacctcgctg ctggggcgga
    12001 gggcgtgacg gaaatttaca acgaaatccg ccaaggcgaa aaaatcggct ttggacagat
    12061 tacacaagac agctggatta ccacccaagt gaaatccaaa ctgttagtaa atagcgaggt
    12121 aaaagccacc gaagtgaaag tcgtcaccga aaacggcgaa gtgtttttaa tgggcaaagt
    12181 cagccaaaac caagctgatg ccgccgccga agccgctcgc aatgtaggtg gagtaaccaa
    12241 agtggtgaaa gtatttagtt atgcgcagta attgataagc tcaattagtt tatatttttg
    12301 taactcacaa gcggtctaaa tttgtcattt ttttgcaaat ttagaccgct tgtttgatat
    12361 aagaagatga ccttagatag gaagataaaa tctatgagtg ggtgatcgta atgatgattt
    12421 ttaattcatt tgactcgaaa aatatgcaca ccctatcaac ataaggattc ccttgactct
    12481 tcattgcttt gagcgtagat ttaaacttaa actatgtctt gaacatagtg gaatcaagac
    12541 acaaatcaaa ggagcagaat atgctattca aagaacaagg atatgatgag tttcttgcag
    12601 agcaaattaa agctggtcaa gaagcaatag ctcgaggaga aacctttacc aaagaacaaa
    12661 tcaataacga attaaatcat ttatttgcgg atatgcagaa acgtcagcaa ttacgagaaa
    12721 atgaaaattt gtttgaggtt aattatgcct aaatcttggg agctgtcact taccgcaagg
    12781 tctaatgtca ttgagatttt acagtcggta gaagattata cagggcattg gttgagcgca
    12841 gtttcacttt gggaacaatt acaaaataaa ctcgatctca ttgcatttat gcctacaata
    12901 gggcgacgta gagaagatgg cacattagaa acattctgcc gcaattatcg tattgtctat
    12961 gagatacacc tagaaaaagt atatattatt actataattc attctcgccg tttgtatcca
    13021 agacctagct agagattaat acctatctaa cagaatctcc ttaaatcaat gatgaagtat
    13081 ggaagtttat aggtcactca atactaaata tcaagcggtc atttttgccg attcttttgc
    13141 aaaaagtatg gcgaaaatga gcgcttgttt ctgttgattt atccacaaaa atgataaatc
    13201 aatttagtca ataactcttt tgtcggttcg atatatttca tttccaaaaa ctcatcgggc
    13261 tggtgggctt gttcaatgga gccggggcct agtaccagcg ttgggcagag ttgttgaatg
    13321 aatggggctt cggtgcagta attgacggca tcgcattttt cgcccagtag cttttcaacc
    13381 acttgcacga tttgtgccga gtgttcgcat tcgtagcccg gaattccatc gtgtaaatgg
    13441 cggatttcaa ttaaatcgcc atattgttcc agcatcggtt ttaaatgctc gtttaccatt
    13501 gcatacaaat cttgcaccgc catattcggt agtggtcgca tatcaaattg caattcgcaa
    13561 caggcacaaa tgcggttaat ggcatcgccg ccgtgaatat tgccgaagtt cattgtcggg
    13621 tgggtgactt ggaacagcgg attgtggtat ttctctcgca gttcatcacg cattttcatt
    13681 aaataaccga tagattggtg cattaattca atcgcattaa tgcctttggc ggggtcgctg
    13741 gagtgtccgc ttctgccggt aatgcgaacc gattcgccaa tatgcccttt gtgggctcga
    13801 atcggtttga gcgaggtcgg ctcgccaata atcgcacaat cggggcgaat gtggctgtgc
    13861 tgagcaaagg ttcttgcccc cagcattgtg gtttcttcat cagcggtggc aagaatgcga
    13921 atcggctttt tgatttgggt taggtcgagt tggctcacaa cctccaccac aaaggcgaaa
    13981 aagcctttca tatctgccgt gcctaagccg tagagtttgc ctgctttttc ggttaattgg
    14041 aatggattga agcgccattt tccttcatca aacggcacgg tgtcggtatg ccctgccaat
    14101 aataagccgc cctcaccctc gccataggtc gcaagtaaat tgtatttatt acggctgcct
    14161 tctaccgcta aaatctcggt tttaaagccg aaatctgcca gccaagtggc gagcaattca
    14221 atcaaacggc ggttcgataa atcttcttcg gcaacaaggc tggaaatggt cggtagctca
    14281 atcagttgag catagcgttg aataaaggga atctgtttca ttggttatcc ttgttgtctg
    14341 aatgagggca atttcaacag gcgtttaatg atggcaaaac cggctaaaat ttcccacagc
    14401 ataatggtat aaatacctgc tcgttcaatt aacgggctaa acagggttgg taggaaaatc
    14461 gtgattaaaa tacagattgc cccgataacg cccgcaccaa tgctaaagcg tttaaaaaat
    14521 tgcattgaag ggtggtagag atcgaagcct gcgatgatca gcgttaaatt gccgattaaa
    14581 aacgtaatgc ttgcccctaa attgtaaatg ccgaattcgc cacgactgct tggctgaata
    14641 ccggcaacta gtgagcagcc aatcgcaaag catagcgaaa gcaataagcc gatgacccgc
    14701 aatttgttgt gagcaatgtg ggtgatgccg attgcataaa taaagaaaaa aacgactgct
    14761 tgtagcacaa acattgaacg cattaccacc gaaagtggtg ataattcgct gattttttca
    14821 tctatcattg tgccgactgg aatcatcaat tcaagggtgc tatggtggaa gtaagtggtg
    14881 agcgatcttt cgctaaataa aatcgtgatg tgttccgcca ccaaataaaa tagcccgcta
    14941 aaacttgaaa ccatagcaat aataaaaatc aaaaaggcac agcttttacg aaaacaaggg
    15001 tgcattagaa aagggtagaa tttcacccca aatgaaccgc tggtaaagta gttttcgatg
    15061 gctttggaaa gcgtggttaa ttgttgaatt aaatgtttaa tccattctgt tttcatataa
    15121 acctatcatt tttaacgggt tgagtgagtt atcgtattcg tacgtacatc aaacacgttc
    15181 atattgccgt tgagggcggc ttgcacgcct aaatcggcat cttcaaacac caaacagcgg
    15241 tgtggggcaa tgccaagttt ttccgcacat tttaaaaagg tttcaggggc tggcttatgg
    15301 ttgcttacat catcagaatc tacaataacc gaaacatatt gacgtaagtt aaatttttgg
    15361 tctaataatt ccaccattgc acggtgtgag cctgtgccga ttgccattgg ttttttgcca
    15421 acgttagctt taataatctc aaaggcaggc aacagagtgg cattggctaa caccatttca
    15481 atcccaaatt cccgttttag ttgtaccact tgctcaaaat aatgctcggg gatattggag
    15541 cgttgcatta tttctcgggc aatcacaaaa gtggttgagc cactcagttc gtacattggc
    15601 tttggattga ttgggtagcc taacacttcg cccacctttt cccacgcctt ggcgtggctt
    15661 ggcatcgtgt caattaatgt gccgtccata tcaaaaatca aggcgtcata ttggtcgata
    15721 atggtttgat ctaacattgc tttccttaaa tttttttcta aattctggat ttaattccgc
    15781 caaattcggc aatcattttt tcggtgaaaa gtttcagctc ttcggtcatt aataagaaat
    15841 cggcatcaaa gcgttgagcc acatcttctt tgagaatatc gtcatttttc tctcgcactt
    15901 catcggcaaa cttcaggcgt gaaagcgtgg cgtcttcatt taacacgcaa ttgaaatgcc
    15961 cttcccattc aatcgcaagt tttgtgataa atttgcccgc ttgcaagtgc cgggcgattt
    16021 cttccgtctc taaatcttgg cgtttacagc gaataatgct gtcggtatcg aaagatttca
    16081 gttctgcctc ttccaacaaa ttcaaccaac ttggcgtatg ccctttggcg atccaattcg
    16141 tcattacctc tgccggcggt agggtaaagg aaatcggcac aaccggcaac gagccaagtg
    16201 tttttcgcag taacgccagc gtatcttccg cccgtttgct cgaggctgca tccacataaa
    16261 ccaactgatt atctaaatcc aaccaaagag cggtgaattg atgtttgctg aatgctcgag
    16321 gcaataacgc agaaacgacc tgatctttca cggcttgttt ttcggttttt ttcagcttac
    16381 gagcctcttt ttcttccagt tctgcaatgc gttgctcggt ttcggctttc accacattgg
    16441 caggtaataa tttatcttct ttgtgtgaaa tcagcaaaaa ttggttcgct tgtgagaaat
    16501 gcagtaaatc cgagccggta agtggcgtag cccagccgaa tttgctcata tcgtgctggc
    16561 tgcaaggggt aaagcgggtt tcttgctgta actcgttaag gctattgctt tccaacgcca
    16621 gctcgccggt taatttatag atcatcacat ttttgaacca aaccattttt gcatatcctt
    16681 tatcgggtgt agaatagtgt tattttaaca gacctcaacc caacacagta gagaatttgc
    16741 gaatgaacga gaaaaaactt gcctttatcg gcaccggaaa tatggcgtat gcgattattc
    16801 aaggcttatt aaaaagcggt tattctgccg aacaaatcat tgcgtgcaat aaaagtaatt
    16861 tggctcgccg agaggagtta caagcggtcg gaattgcgac aaattttgca aatcgtgagg
    16921 cggtagagca ggctgacgtg atcgtgctgg cggtaaaacc acagatgatg gcacaagtgt
    16981 gtgccgagtt tgccgatgtt gatttttcca acaaatgggt gatttcagta gcagcaggta
    17041 tttctgtgca acgcttggaa acgctgttgc cgagtgcgaa aaatatcatt cgcacgatgc
    17101 caaacacccc gtctttaatc agcgaaggaa tgaccggatt atttgcaaaa aaatcggtaa
    17161 atccgaccgc ttgccaattt gccgaacagt tgatgtcagc cgttggtaaa tgttactggg
    17221 tggaaaccga ggagcaaatc aaccacatta ttgcgataac cggctcaagc ccggcgtatt
    17281 tcttccgttt tatggaggca atgcagcaaa gtgcggtgca aatgggcttt tccgagcagg
    17341 acgcaagaac gcttgtacaa tctgtcgcat tgggggcggc gaaattggtg gaagcgaacc
    17401 cgactacgcc actttcgacc ttgcgggaaa atgtgacctc aaagggaggc acaacggcga
    17461 aagcccttga ggtgtttgag cagcacgatc ttgctaaaac cgttgatgat gcaatgtggg
    17521 cggcaattca tcgagccaga gaaatggagc aatcgttatg atgaaagttt ccccgttcca
    17581 atgggcggca tttaattact ttggcttttt ttgtgcctat ggcgtgttgt tgccgttttt
    17641 gccagtgtgg cttaaacatc acggctattc gactgaaatg atcggcttat ttgccgccgt
    17701 tggctatttg ttccgctttg ccggcagtat gcttgcctca caacgggtaa aaaccgtgag
    17761 ccaactcatt cccaccgccc gcagtttaac ttggctgaat attgcggctg cggcggcgtt
    17821 gctgttttca ggggatttca tttggctact ttttccggtg ttaatgttgt ttcaaatgtt
    17881 caattcgggg gcaatgccga tagccgatag cattgcctca atttggcaac atcagatcgg
    17941 gctggattac ggcagagcaa ggttattcgg ctcaatggcg tttgtggtag gctcactttc
    18001 tgccggctat cttatcggct tgcttggtga aaattcggtg gtgtggatta tcatcggttt
    18061 cttggttttt ttaggaatag ggcagcttgc tacgcccaaa gtcgggtttg aagaacaagg
    18121 taataaagcc aatacttcaa gcgtaactta tcgccaatta ttgaaagagc cggaaacctt
    18181 aaaaatgttg atcgcggtgt cgttaatttc agcctcgcac gccgcttatt acacttacag
    18241 caccattcat tggtcaaatg ccagtatttc aaccgcaatg actagcctgt tttggggctt
    18301 ggcggtggtg gcggaaattt tgttcttttt ggtctctaaa cgcttgttta aatcgtggaa
    18361 aatcagccat ttaatgattt tagctgccgt ttttgcagtg attcgttggg caataatggg
    18421 tagtactaca gagatcgtgc tgattattgt aatgcaaatg ctacattcta ttaccttcgg
    18481 ggcggctcat attgcgatga ttcgctatat ttcgatgcaa tcggcagagc gtgtgacgaa
    18541 attacaaggt ctctattttg gcttggcaag ctgtgctttt atggcagtat ttacctttat
    18601 tgccggaatg gtctatcaac attccccaag cctgacattt tggttgatgg caatttttac
    18661 cctacctgcc atttttattg tgccgaaaag gtttgaagta cagattaatt gatagcaaaa
    18721 atgccgacaa gttgtcggca tttttatcga aattcattga atttgctgaa attagattgt
    18781 tttcacgttt acggctgaag ctccacgctc tgaatcttgg atttcaaatt gtactttagc
    18841 accgtcttct aatgtgcggt agccgccgtt tgcttcgata gcagagaagt gtacgaatac
    18901 atctttgcca ccttgatcag gggtgataaa accaaaacct ttggtggcgt tgaaccattt
    18961 tactgtgccg gtaattgctg acataaaatt ttccttatat aaatacaaaa agtgataaaa
    19021 gatagctaaa cgggatatta cagacgtatc tatcaatcac ttgccttgag gaaaataact
    19081 aacaagattc aactttaatt aacgcacgaa cagcttgagc cattacacca cttattcatt
    19141 ttttaagcaa atcattttta tacttttatg aacattcaaa tgaaaaaaga gtctatctct
    19201 tttgtaaacg taatgtggaa tttatatgga cgaagcctta taaatcaaat atagtatcca
    19261 gttagatttt cacttatcta attattagat ttttattaaa taggacttat tatgtcagag
    19321 caaattgagc aaaaagtaga acaaactcag aataaaacca atccaagtac caaggaagtg
    19381 attgcttatt tagcggagaa atttccgctt tgtttcacgc ttgaaggtga agtaaaacca
    19441 ttgaaagttg ggttgtttca ggaattagct gaagcattaa aagatgatga gaaaatcagt
    19501 aaaacgttat tgcgccaagt attgcggaat tacactaatt cttggcgtta cttggctgcc
    19561 agccaagcta atgttgctcg tgtcggctta cagggtgaag aagttggcgt ggtaacagaa
    19621 gacgaagcta ctcacgccgc agaagctttg gctgctgcga aagcggtggt tgcagaacgt
    19681 aaagcacaag agcgtaaagc acaacgtaaa gagtacttca aacagaaagc acgtgaagaa
    19741 aatgcgaaaa agcgtgcaga atttaaggcg aaaaaagcaa tagataattt acctaaagct
    19801 tcagaagaaa aattagctgc attagcagat aaattcggtc gtaaatagtt ttcaagtcgc
    19861 tttgtgctta caagcggtcg gattttagta aaattttgca aaaaaatgac cgcttgatta
    19921 tttggaaaag aagatgaaat taacaagatt aaataaaatt tttgccctag ccctaggttt
    19981 aatgatagga aacgcttttg ccgttcagcc ggacattaaa gaaagtgcga ttgtgatgcc
    20041 aaaacctaat gagcagcata gcttatcaac caagcgtgta acagcccgat taactcaatc
    20101 gcattatcat aaatttcaac tgaatgatga gtttgcaggg aagattttta accgctatgt
    20161 cgattggctt gatccttctc ataatacttt tcttcaagcc gatattgatg aaatgcgtag
    20221 taaatatgct acaacattag atgatgattt atatgctggt aaattagatg cagcatttgc
    20281 aatgtatgag ttaatgtcta aacgtcgtta tgagcgttat agctatgcct tatctttact
    20341 agataaagag cctgacttaa aagggaatga tgaaattgag attgaccgtg agaaggccgc
    20401 atttccaaaa agtgtagaag aggcaaatac actttgggag cagcgagtta aaaacgatat
    20461 tatcaattta tatcttaaag ataaaaaatg gcctgaaatt aagaaaacac tcactaaacg
    20521 ttataacttt gcgattaagc gtttaactca agttaaggct gatgatattt tacaaactta
    20581 cttaaattca ttctctcgtg agatcgatcc ccacactagc tatttgtctc ctcgtgcggc
    20641 aaaagcgttc caagagagca tgaatctgtc gctagaagga attggtgcaa cgctaaccca
    20701 agaagatgat gtaaccagca ttagagcatt agtgccagga gcccctgccg ctaaaagtaa
    20761 gaagctggta gtcggcgata aaattgtcgg tgtaggtcaa ggtgagagag gtgagattga
    20821 agatgttatc ggttggcgtt tggataatgt agtcgataaa atcaaaggta aaaaaggcac
    20881 taaagttcgt ttagaaattg agcctgaaaa aggtggaaaa actaaaatta ttacccttgt
    20941 gcgtgataaa gttcgtattg aggatagtgc tgctaaatta acggtagaaa aagtagatgg
    21001 aaaaaatgta ggggtaatta agatccctac tttttatatc ggtttgactt cagatgtacg
    21061 taaattactt actcaaatag agaaaaaaaa tgttgaagga ttgatcattg atttacgtga
    21121 aaacggtggt ggttcgttaa ctgaagtgat tgaattaact ggtttattta ttaaagatgg
    21181 gcctgtagtg caagtacaag acgcattcaa tcgtatcaaa gtacacgaag atccagaatc
    21241 aaaatcagtt tatgatggaa aagtgatggt gatgattaat cgccatagtg cttcagcctc
    21301 tgaaatcttc gctgcggcaa tgcaagatta caaccgtgca attattgtag ggcaacaaac
    21361 ctttggtaag ggaactgttc aacagagccg ttcattgaat tttgtatatg atttggatca
    21421 agagcctctt ggttttatcc aatatacgat tcaaaaattc taccgtatca atggtggaag
    21481 tacccagcta aaaggggttg aggcggatat taaattcccg gaaatcatta atgctgcaaa
    21541 aacaggtgaa agttttgaag ataatgcgct tccttgggat aaaattccag cagctaatta
    21601 taaagaggct gggaatgctc gtaacgcggt tgctgcatta acagcgaaac atcaagagcg
    21661 tattgctaaa aacccagagt ttatagtatt aaacgagaat attgcgattc gaaaagaacg
    21721 tgatgagcgt aagtttttat cgttaaattt agaagaacgc ctgaaagaaa ataaagcaga
    21781 tgaaagcaag cgcttaaaag atattaatgc tcgttttgcc cgtgaaggca aaaaagcatt
    21841 aaaagatatt gatgatttac caaaagacta tgaagcaccg gactttttct taaaagaagc
    21901 tgaacagatg atgcttgatt ggtcagaatt tgataaaaaa tcataaatgt gtt
//
LOCUS       DANLXK010000029        21827 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.029, whole genome shotgun sequence.
ACCESSION   DANLXK010000029 DANLXK010000000
VERSION     DANLXK010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21827
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..167)
                     /locus_tag="PXD88_000920"
     CDS             complement(<1..167)
                     /locus_tag="PXD88_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6280513.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTA"
     gene            complement(191..343)
                     /locus_tag="PXD88_000921"
     CDS             complement(191..343)
                     /locus_tag="PXD88_000921"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280514.1"
                     /translation="MKSKEIMKKLRLKDDKHFRMQYLKPALTLGVIEMQFPENPKHRN
                     QRYFKK"
     gene            complement(373..2034)
                     /locus_tag="PXD88_000922"
     CDS             complement(373..2034)
                     /locus_tag="PXD88_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL6280515.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            complement(2047..3516)
                     /locus_tag="PXD88_000923"
     CDS             complement(2047..3516)
                     /locus_tag="PXD88_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL6280516.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            complement(3564..5915)
                     /locus_tag="PXD88_000924"
     CDS             complement(3564..5915)
                     /locus_tag="PXD88_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6280517.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXD88_000925"
     CDS             complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXD88_000925"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL6280518.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            complement(7045..7383)
                     /locus_tag="PXD88_000926"
     CDS             complement(7045..7383)
                     /locus_tag="PXD88_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL6280519.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            7676..8995
                     /locus_tag="PXD88_000927"
     CDS             7676..8995
                     /locus_tag="PXD88_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL6280520.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            9113..9475
                     /locus_tag="PXD88_000928"
     CDS             9113..9475
                     /locus_tag="PXD88_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL6280521.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            9586..10623
                     /gene="waaF"
                     /locus_tag="PXD88_000929"
     CDS             9586..10623
                     /gene="waaF"
                     /locus_tag="PXD88_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL6280522.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            10690..11649
                     /gene="rfaC"
                     /locus_tag="PXD88_000930"
     CDS             10690..11649
                     /gene="rfaC"
                     /locus_tag="PXD88_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL6280523.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVECQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            11770..12144
                     /gene="rpsL"
                     /locus_tag="PXD88_000931"
     CDS             11770..12144
                     /gene="rpsL"
                     /locus_tag="PXD88_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL6280524.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            12275..12745
                     /gene="rpsG"
                     /locus_tag="PXD88_000932"
     CDS             12275..12745
                     /gene="rpsG"
                     /locus_tag="PXD88_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL6280525.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            12847..14949
                     /gene="fusA"
                     /locus_tag="PXD88_000933"
     CDS             12847..14949
                     /gene="fusA"
                     /locus_tag="PXD88_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL6280526.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            15009..16193
                     /gene="tuf"
                     /locus_tag="PXD88_000934"
     CDS             15009..16193
                     /gene="tuf"
                     /locus_tag="PXD88_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL6280527.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHFGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IK"
     gene            16490..17788
                     /gene="tig"
                     /locus_tag="PXD88_000935"
     CDS             16490..17788
                     /gene="tig"
                     /locus_tag="PXD88_000935"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL6280528.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            17904..18356
                     /locus_tag="PXD88_000936"
     CDS             17904..18356
                     /locus_tag="PXD88_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL6280529.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            18377..18877
                     /gene="secB"
                     /locus_tag="PXD88_000937"
     CDS             18377..18877
                     /gene="secB"
                     /locus_tag="PXD88_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL6280530.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            18984..19994
                     /gene="gpsA"
                     /locus_tag="PXD88_000938"
     CDS             18984..19994
                     /gene="gpsA"
                     /locus_tag="PXD88_000938"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL6280531.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            20010..20825
                     /gene="cysE"
                     /locus_tag="PXD88_000939"
     CDS             20010..20825
                     /gene="cysE"
                     /locus_tag="PXD88_000939"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL6280532.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            20874..21485
                     /locus_tag="PXD88_000940"
     CDS             20874..21485
                     /locus_tag="PXD88_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6280533.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQAGLALNKTFIFNELKVKPELGSYFVDASHGTLKTKLNEFSLNQNIGR
                     YFKQEVGITLHYKGVSSSVHAGFTKGNTLQEQKFISLKVGYEW"
BASE COUNT         6614 a         4155 c         4673 g         6385 t
ORIGIN      
        1 gcagtttttt tgtttttttt gatctttcct tctgcaatca agcggtcttt ttctgcttgg
       61 attttgcaaa ggagttcgct tgccggttca tcatttggat cttgtggaac gagcttgcct
      121 tggattgcta gttgtaggat tgcgtttttt agctgttggg ctttcatttt ttattctcaa
      181 taatcggttg ttatttctta aagtatcttt gattacggtg ttttgggttt tctgggaatt
      241 gcatttcgat cacaccaagc gttagtgcag gttttaaata ctgcatacgg aaatgcttat
      301 catcttttaa cctgagtttt ttcataattt ctttgctctt catcggctca agcaacactg
      361 aaagtaagcg atttacttcg ggggtaattt gtttgctttg ttctggggta attgtttgac
      421 ttgcttcact ttgcttttct tcgggggggc gcccttactc tcactagctt tatcaagttg
      481 gtcgaaaggt ggattaaaat aatcatcttg tgatttctct gtgattatcc attctaaatt
      541 cactagggta tagagttgtt ttctcggact ccccgaactg gttagtaagc ctttttcttt
      601 cagtcgtgct agtgccaaag taatatttct gcgtggatat tggggcagtt tttgtgctaa
      661 ttctgcaaac attgctttac cttgattgaa ggcgataaag agtaagcaat ctttttgaat
      721 aggctgtaac tcagagaaat tttcgccaaa gcaagcggta aatttttcct caaaatctgc
      781 aatcatacct gattgaaaag ttaaggtgag tttagtgtaa tcaatttcac tttctaaaag
      841 cggtgaattg aaatttcggc tttgccaata tgaataaata tcccgaacgc cttgtccttg
      901 tcgctcacat agccctaaac ggtggaataa gttatgaata atagaattac ggcattccga
      961 tctttgccct gcaatagccg tgggaatatc aaccaacatt actcctgcat tttcaaaaat
     1021 cagtttgtta tctttggttt taatgacttt tagatggcga acattgttaa agtaatctgc
     1081 gtgagtaatt gcattgatta gagcttcccg tagcccgtca gtaatttcat tttcctcagt
     1141 acgggttaaa ttatctaatt tgaaatgttt atctttacca agctcttgaa taagtggcac
     1201 aattttcaag taaaattcaa agagattgcc ttcttcaaga tcaaaatcgg taatccgtaa
     1261 tgtatagcgt tttacatcac cagcttcttc gtaatattca aaaaagaagt ggggaaatat
     1321 gcttgtaatg gcatagtgct taccaaacat caataagcct gcattggtaa tgccctcgct
     1381 attctgtgct aaatcttttt tataagcccc aatttcttgc agcaatttct catcggataa
     1441 cgtaagtaat tttgatgtgc tgttatgggc tttcagcaga tttctgtatt tatccaatgt
     1501 gcttaaactg atatcatcaa tagaagcata aggcacaatt ctcccatcag catctttttg
     1561 gctatagctt gaaatgaaag aacgcagttc agaggaggtg agtttatgat cgcctgaatt
     1621 taaacgaaca taagaaagtc gataatcacc atttaaatgg ataggacggt ctaaaatatc
     1681 agctgctttc acataaattg caatcacgct tttattttca acttgaaaga ttttcacatc
     1741 attatccttt aataaggatt tactgacttt ttcactacga gattgggaaa ataattcatc
     1801 aatgacttta tcaggatcat taacaccaga aattagcagt tcaggaaaat gtccttgttc
     1861 attttccttt attcctaata aaataaagcc accattgctg tttgcaaaag ccgaataagt
     1921 atgccaaaga tcttttggca cactattttt tgcctcttta tattcaattt ctgccttttc
     1981 tcggataaat tgctgatgtg caatcatttt ttcgatatgt tcccaagtca gcattttatg
     2041 ctcctattac agtttaatgc ctaaaatatc ggtaatttct gctagaatct tatcaatatc
     2101 agcattgtaa gcggtgcgtt ttcgctgata atctgcaatt agttcatcag gcggaaggat
     2161 ttcctcttct tcgtgaggaa agccacataa atcgaggttg tattgacggt cggacatttc
     2221 ctttaatgta aaacttttcg ctttgtcaaa cccttcgact tcaatcactt ggcgatttcc
     2281 ccaccattca acaacttcgt tgaaatgttc caatttcatc ggtttagttt tggagaaatt
     2341 tttataaccc tgtggcatat caaggcgata aacccaagtt tcacgggttg gctcggtttt
     2401 atcaaaaaac agaatattag tcgtaatcga ggtataaggg gcaaagacac tatgcggtaa
     2461 gcggataatc gtatgcagat taaactcttc taatagcttt ttcttaatcg caactttggc
     2521 attatctgtg ccgaacaaaa atccgtcagg cagcaccacc gcagcccgtc cattctgttt
     2581 taggcggtac ataattaccg acataaacag atcagcggtt tcactgctct gtaaagccgt
     2641 agggaaattc tttttaattt gctcaatttc tgaacctccg taaggtggat tcatcaaaat
     2701 cacatcaaat ttatcatttt cggtgtaatc tttgaccgat ttttctagag cattatcgtg
     2761 atgtacattc ggattatcaa tatcgtgcaa caataaattg gtaatacaaa gcaggtgagg
     2821 aagggctttt ttctcaatgc catacacaga attattgaat aaagtgcggt cagaaagggt
     2881 ttgaatttga ctttccaata cctttaacgc cgaagttaaa aaaccacccg tcccacaggc
     2941 aaaatcggca atgcgttcgc caagtttcgg tttgattgct tgtaccataa aatcggttac
     3001 agcgcgaggg gtataaaatt cccctgcatt acctgcactt tgtaaacttt tgaggatatt
     3061 ttcataaata tcgccaaagg cgtgtcgttc ttggtaatgg gcaaaatcaa tttcatcaat
     3121 gatattgata acctgacgta ataacacccc atttttcata tagttgttat tatcttcaaa
     3181 agcagcacgg ataatccgtt ggttcatcgg cgtatcggct gaaataggca gattttttaa
     3241 agtcgggaaa agttcgttat tgacgaaaga gagtaattca tcaccagtca tcgctttgcc
     3301 gtctttttta tcttccgccc aattttgcca gcgtaaaaaa ttcggcaaaa ttgagtgata
     3361 ttcatcgttt tccagttccc actcttgttc tttagcatcg taaattttca agaataagat
     3421 ccagacgatc tgttcaatgc gttgggcatc accgttaatc cctgcatcgt tacgcattac
     3481 atcttgcagg cgttttacta tgttgttgag gctcattgtg atccttgttt atctgtaaaa
     3541 ttttgttgta aaataaccgc ttgttattcc gaataaatca tcttttctaa gccttttacc
     3601 gctttctggt agagttcttt accgccgaaa tttttaataa tagacactag acctccaaaa
     3661 cggctgaatt gcggtgtctt taaaatttcg gttttagtca gatcttgatt gccggatttg
     3721 acatattcat taagcagcaa ccctaaaact tgctggtttt cgggcgaata ctgctccaca
     3781 tagccacttt gtttcacttt ttctgctcgt tcggttttag tcagtggttt tttgccaaag
     3841 gagatgtggc ttaatacatc aaagtcttca acatcgtggc tgaattggcg tgtttggcga
     3901 agggctgcca gccattttgg atcggtgtaa aatttcgaga aaatttcacc gcttgttgtc
     3961 cattgctgtt ggaactgttc gtaactgccg aactcttttt gcatttcccg ttttgagaac
     4021 agatcaatat cttcagaaac cagctcgccc tgctcattca gatattggac tttctcgtct
     4081 aaaatgcgta atttgagtgt gccgaaatcg acaactaccg ggattttata tggctttagc
     4141 tcggggtctt taatgatgtc cttatcactg ggtttaggaa gcggttgttc gacaagtggc
     4201 ttattttccg gtacatctaa aatcaccacc ggctcaccat caaatgccgg atcagcaaac
     4261 aggcgagtaa cgcctcgaaa atctaaaatg gtgaaaaatt ctttgccgaa atcagggcga
     4321 agacgagtgc ctcgtccgat aatttgttta aattccgtca ttgattgaat gtttgcatca
     4381 agtacaacca gcttacaggt tttgctatct acacctgttg tcatcaattt agaggttacg
     4441 gcaatcacag ggtaatcttt cccttcattt gctacatcac aaaattcttc taaatcaacg
     4501 cctttgcctg attggtcgcc tgtaatttgg cagacatatt tggaattgtg tttcaacata
     4561 tcggcattga ggcgtgaaag ctctgccacc attcgctctg catggttgat gttggcacag
     4621 aagactattg ttttctgcaa gcggtcggtt ttgcgtaaaa attcgcaaat tctctccgca
     4681 accaagcggg tgcgatcatt tagcacaatg ttgtaatcga aatctttgac tgtatagagg
     4741 cgatcttcaa tctcattacc ttgatgatct tttaaacctt tggttggtcg ccagcctttt
     4801 aaatcacagt ccagatcaac acgaatcact cgataagggg caagaaagcc gtcttcaata
     4861 ccttgtttga ggctataggt ataaatcggc tcgccaaaat aggtaatgtt gctggcatca
     4921 tcggtttctt tgggggttgc agtcataccg atatgggtgg cgtccttgaa atacttcaaa
     4981 atagcacgcc agtcagaatc ttcttttgct gaaccacgat gacattcatc gatcacaata
     5041 agatcaaaga aagagggttg gaactgctta aacagttcgt tatcggtttc accgtcaagc
     5101 tgttgataaa gtgcaagata gacttcataa gcactgtcga gctttttatt gctgactttc
     5161 accattttgt ctttaaacgg tttgaagtct tgcatcattg gctgatcgac tagtacattg
     5221 cgatcggcaa gaaataaaat tttctttttc gcaccactgg tttttaaacg atggataatt
     5281 tggaaagccg tataggtttt acccgtgcct gttgccatta ccaataaaat cctctgctga
     5341 ccttttgcta cagcttcaac agtacggtta atcgcaattt cttggtagta acgaggctct
     5401 ttaaaggtgt cagtgctact ggtgtaataa ggctgttgaa taattttcag ctcttcggtg
     5461 gtatattgtt tcgcccaacg ttggtggagt tcgtcgggag taggaaatgc tgacatcgga
     5521 agggttcgtt gtacgccagt gataaaatcg tgttccacaa actcatcacc atttgagcta
     5581 tatgcaaaag ggacatcaag caatcgagcg tatgtcattg cttgctgtaa gccgtgtcgg
     5641 gaagagtgat ggttatcttt ggcctcgacc acggcaattt tttgatttgc ggaagtatag
     5701 agcagataat caacccgttt tgcttcgatg cgtttagttt gcgtcgtttt tggatcaaca
     5761 actacttgcc catctgtaaa tcgtttattg gttttaaatg tgtactcttc gccaatttgt
     5821 ctatccgacc atcctgcatt tctaattgca ggagagatta atcgagagcg aatttcttgc
     5881 tcgttcatct gctttaattc ttgaagtgtg tacatatttt tccttccgat aagagtttct
     5941 tatcggaaga ttatagcaaa cagtttaggt aaaattaact caggatttaa ttgataattc
     6001 tacccaactc ttcccccatt cgggtttgca ttcctgcaat aagtgcaggg ttgagatgta
     6061 ctttaccttt cgggaagagg ttaattacgg ttgagcctaa acggaaagct cccatttctt
     6121 cgcctttttg gagtttgatg gctttttcgc cttcggtttc gtaattccaa actaccactt
     6181 catcagcgcg aggcggatta attacgccag cccaaaccgt actcatactt gcggtaaccg
     6241 ttgcaccgac caaaatctgt agcattggtc cgaatgcggt gtcaaattca caaatcacac
     6301 gctcattgcg agcgaataag tttggaacgt gttcggctaa aaacggattg acggagaaca
     6361 attcgcccgg cacataaatc attttacgca atgttccatc gcacggcata tgtacacgat
     6421 ggtaatcagt tggcgataag taggtggtaa taaatgtgcc gtctttaaat tttgccgcca
     6481 tttcttcatc atttgccaat aaggtttcta gcgtaaaatg atgccctttt gcttgtaata
     6541 aacggttatc cgaaatttcg cctgattcgc tgactttacc ttctgccggt aagcaaagtg
     6601 tatttggatc ttgattaatc gggcgtgcgt tttcttttaa ttcacggata aaaaattcat
     6661 taaaagtagc ataatctgac ggctcggttt ttttagcttc agataaattg actttatact
     6721 gttttgcaaa cagtttgatg ataaggtgag taactacgcc ccatttttgc tctgctaacc
     6781 aacctgccgc acgggtaatt gccagttgtg gcagtaaata gtgcagagcg attttcacac
     6841 gttggaaata ggttggaact ggatattttt ttaattgcat tgcgttttcc ttttatttaa
     6901 aaacgagaat ttgcgtttaa ttgggggcga agtatagcaa atacaatgca aaatagataa
     6961 aaaatcttta aggtgttgaa gtggctacaa agaaaaaaac agataggggc tttgtaggaa
     7021 ttccacttca acaatttggt tgtcttattc taaaataata ttggctcgat ttttttctac
     7081 cgttgcttgc ccaattccgg agacttcagc aagttgctca atgtttttaa aattgccgtt
     7141 tttagtacgg taatcgacaa tcgcttgagc ttttttctgc ccaattccca ctagcttgtc
     7201 ttgcaattca gcagcactag cagtattgat atttaccgca ttagcgttgg tgatttgtgt
     7261 ttgctgtacg ggttgagtga ctgcattttg ttcaacaggc attgtagttg gcggtgtttg
     7321 ggcaaaagcc attgcattta agccaaacaa gaatgttaga ccaagttgtt tgattttctt
     7381 cataggattt ccttattagt tgttgaaagg tcgaaaggaa gattaagagg gaataaaata
     7441 gaactcaacc ggcaaaaata aatttttcga cacagatcga aaaaatagaa aatggctaaa
     7501 cttctagacg tgcatttggt ctgaaattca atgaaagtaa atagatttgc aaaaaattag
     7561 gcaaaaatga ccgctagttg cgtaaattta gttaaataaa ttcaaatagc ggctgaattg
     7621 ctttagaata tcgccatttt tatactcatt aacaacgcta ttatttggaa ttaatatgac
     7681 acaaaataat tttcgcaaag aaccggtttt tggtgaatct tcggttacct ctcaagacgc
     7741 tgaagcaacc aaaacagata cagctcaagc cccttatgtt tcgttgcgtt caaccaaagc
     7801 accggggcat acgtttaccc caattatgaa aagacctgat gctaaagtag aagatcatac
     7861 ggctgatgtc ttttcggcta agcaggcaaa agaattccaa tttactccaa gttcagaagc
     7921 tacagaagca gtagagccgg ataataccat tcattcggtt gaagaaagtg tatcaaccgc
     7981 atcttttaac gcggttgaag cacaagaaaa tgtggaaaaa gaagtggtta aacctgcacc
     8041 cgagagtttc actactgagc gtattattcc aaatgcggca acagctgccg cagcagccac
     8101 tgcggcagct gcagccacta aaaccaaaga gattaaagct aaaatgccac ctaaaacccg
     8161 ccgtttatta ttagtggcat tgttggcgtt agcattattg gtactgtttt tcttgttaaa
     8221 accaagtacg ccggaaactg tcgaagagct acaatctcag caaggtggta gcttgccgat
     8281 tgaattccga ccggttgatg aagctgaagc gaaacgtgcg gaagaacaag ctcgtgcaga
     8341 acaagaagcc gctgaagctg caaaagctca agaacaagct caagccgctc aacaagagtc
     8401 tgtaacagtt gctccagccc aaaccgagca aacaatggct aaaccgtcac aagatagcca
     8461 gtcgcaaaca caatcacaag cagtagttga gcaacctgtt gcggtgaaac cggtggaaaa
     8521 taaaccggtt gttgcacaac cggcgattaa gcctaaaacg gaaaatagcg tggtgttcca
     8581 acctgaaaca acggtaaaac aacagcctaa agcccctgct aaaactgaag tgaaaaccga
     8641 acgtgctaca ctggcagcaa aagaaacggc aaaaacagca gctaaaccag ttgagaaagc
     8701 tccgacaaaa actgaagcgg taaaagcagc accggctgcc gagtcggcaa atgcggtagc
     8761 aaccaaaaca atgactgtgc caaaaggtgt atcactaatg caagtgttcc gtgataacaa
     8821 tttaaatatc tcagacgtta atgcgatgag caaagtcaat aacgtggtga gtaatttaaa
     8881 agtaggcgag cgagtaaccg ttcgtttaga taaaaataac cgtgtggttg aaatgagcat
     8941 tggctcaggc ggcaaattta cccgtcaagc aaacggtagc tatactttta aataaataaa
     9001 atgaagaaaa agagcaacgc tacaaacgtt gctcttttat ttaaaaagga gataaaggat
     9061 gaatttattt tgcccctctt acaaacttat ctacttaacg ctaagctcag cgatgttagt
     9121 tgcttgtagt acagtggtta cccctgttga gcaaattcat caagtacaaa aggaaaaaga
     9181 gtcagtaaag aaagtgacta aactgatagc acaagcacct aaagtgagtt tatatcgttg
     9241 tgagaatgat aagaaggttg aagttgaacg ccagggacga acaaaaaaag cgttaaaaaa
     9301 ggaaatagtc acagtgagtt atcaagggac aacgcatcag ctttcacctt ctgtaacgag
     9361 agatggtaaa aaatacacta atatccgttg gacttggcat gaaacccgta gtggtaaagc
     9421 atttttgtat aacaacacta aaaaaacgtt agcggcaaat tgcataaagc agtaacaagc
     9481 ggacacaaaa agtatcgctt tttgaacgtt ggctttgcca acggcagcga agctgtgaac
     9541 aatccttaca aggattgtga ataaattttt aagagaattt tgcaaatgaa tattttagtt
     9601 ataggaccgt cttgggtggg tgatatgatg atgtcgcacg cactttatca acagcttaaa
     9661 atacagtatc cgaattgcca aattgatgta atggcacccg attggtgttg tccgctttta
     9721 gcccgtatgc ctgaggtgcg taatgcgatt tcaatgccga ttggacacgg ttcatttcgt
     9781 ttgtgtgaac gctaccgact cggaaaatcc ctgagaaatc aatatgatat ggcgattgta
     9841 ttgcctaatt cattaaagtc tgcctttatt ccactgtttg cgaaaattgc gagacgtcgt
     9901 ggttggaaag gggaaagtag atattttttc ttaaatgatc ttcgcagtaa taaaaacgac
     9961 tacccaatga tggtgcaacg ctatgtagcc ttggcgtttg aaaaggctac tgttccaacc
    10021 gcacaacagt tgccgattgc ttatccatac ctcacaactg atagcgaaca aattgagcag
    10081 accaaagcga aatttgaaaa acagttggct tatgcggaaa accgtcctgc catcggcttt
    10141 tgtccagggg ctgaatttgg accggcaaaa cgttggccgc attatcatta tgcaatattg
    10201 gcaaaaatgt tgattgagca aggctattcg gtacggttat ttggctcgaa aaaagatgaa
    10261 gccgccggtg agcaaattcg cttggcatta cctgaaaatt tacaacgcta ttgcctgaat
    10321 ttagccgggc aaaccgattt aaaccaagcg gtagatttga ttgcagattg taatgcagtc
    10381 gtgagcaatg actccggctt aatgcacatt gccgcagcac taaataaacc gctggtcgcc
    10441 ttatatggac cgaccagccc acaatatacg ccgccgttat cccaaaatgc cgagatcatg
    10501 cgcttaattg aaggcggttt gattaaaatc cgcaaaggcg aaggggcaga gggctatcac
    10561 caaagtttaa ttgatattca gcctgaaatg gtgatggaca aattagctga actgttagtt
    10621 taaatggata acaagcggtt gaatttgcca attttttgca aaaaaagacc gcttgtttgt
    10681 ttataaaaga tgaaaatttt aatcgttaaa acctcatcaa tgggagatgt attacatacg
    10741 cttccagcca taaccgatat gcaaaatgct attcccgatt taaaagtaga ttgggtggtg
    10801 gaggagaatt ttaccgaaat tcctgcgtgg cattcagcgg taaataaagt aattccggtg
    10861 gctattcgcc gctggcggaa aaacctttgc caaagacaga cttgggtaga atgccagcag
    10921 tttttaaaac agctaaaaag tgagcagtat gatgcggtaa ttgatgctca agggctgatt
    10981 aaaagtgcgg tgttagtaac tcgccaagcc aaaggcaaaa aatttggcta tgataaaaac
    11041 tctgcccgag aagggttaag tagtctgttt tacgatgaaa cgtttaatat cccctaccaa
    11101 caacacgctg tagaacgcat cagaaaatta tgtgcaaaat cattaggtta tgctttgcca
    11161 accgaacggg gcgattattg cattgcacaa cattttgcaa aaaatcctca aaaaacgacc
    11221 gcttacatta tgctgattca cgccactacc cgagcggata aacattggca agaagcctat
    11281 tgggcggagt tgattcaagc gttggataag cacaatctgg cagtcagatt gccttgggga
    11341 aaccaagccg aaaaagaacg ggcggagcgt ttagcgagtg tggcgaataa tgctaaggta
    11401 ttgccaaaaa tgagcttaac cgatattgct actcaacttg cgggagcagc ggcagtggtg
    11461 tcggtggata ccggcttgag ccatttggcg gctgcgttag ataagccaaa tgtgatttta
    11521 tatggggcaa ccgatccaaa acttatcggg gcttacgggc aaaatcagtt ttatctaaaa
    11581 gcagataaaa tggaaaatat tacctcttca caagtgctag aaaaattact tccattgatt
    11641 aacaaatgat cattgttgtt ctcttactgt gcttgacttt tatccacgtt caatttagaa
    11701 ttcaccgtcc tttcgtgtga aaggatgttt ttaattttat ttttaataat tttaactgga
    11761 gcttttttaa tggcaactat caaccagcta gtacgcaaac cgcgtgtgaa aaaggttgta
    11821 aaaagtaacg ttcctgcatt agaggcttgc ccgcagaaac gtggcgtgtg tactcgtgta
    11881 tacactacta cacctaaaaa accgaactca gcattacgta aagtatgtcg tattcgttta
    11941 acaaatggct ttgaagtaac ttcatacatc ggtggtgaag gtcacaacct tcaagaacac
    12001 agtgttgtat taatccgtgg tggtcgtgtt aaagacttac cgggtgttcg ttaccatact
    12061 gtacgtggtg cacttgactg tgcaggcgtt aaagatcgta aacaaggtcg ttctaaatac
    12121 ggcgttaaac gtcctaaagc ttaatggttc tccgttgagt aaggccaaac gtctaaattt
    12181 taatatttaa accataaact ccagtcaaga tgccttaagg cagattagat gagttttgga
    12241 tatcctgaag atttaatata cggagaaatt tccaatgcca cgtcgtcgta gtattgaacc
    12301 acgcaaaatt cttccagatc cgaagttcgg ttcagaatta cttgcaaaat ttattaacgt
    12361 gttaatggta gatggtaaaa aatctactgc agaaaaaatc gtttacggtg cattagaaac
    12421 tttaacacaa cgttctggta aagaagcgtt agaagctttc gaaatcgcat tagaaaacgt
    12481 acgtccaact gttgaggtta aatctcgccg tgtgggtggt tctacttacc aagttcctgt
    12541 agaagttcgc ccaacccgtc gtaatgcttt agcaatgcgt tggatcgtag aagccgctcg
    12601 taaacgtggt gacaaatcaa tggcattacg tttagctaac gaattatcag atgcagcaga
    12661 caacaaaggt tcagcagtga agaaacgtga agacgttcac cgtatggctg aagctaacaa
    12721 agcgtttgct cacttccgtt ggtaatcgtt taagcaaact tatcaaaggc ttcatctcag
    12781 tttgcggtga agccttaccc ttattaagaa ttttaattta aaccccaaac aaggtaataa
    12841 ataaaaatgg ctcgtacaac ccctatttca ctttaccgta acatcggtat cagtgcgcac
    12901 atcgatgcgg gtaaaacaac tactacagag cgtatcttgt tctatacagg tgtaagtcac
    12961 aaaatcggtg aagttcacga tggtgctgca acaatggact ggatggaaca agaacaagag
    13021 cgtggtatca cgatcacatc tgctgcaaca acagcattct ggtctggtat gtcacaacaa
    13081 tatccacaac accgtatcaa cgttattgat actccgggac acgttgactt tactatcgaa
    13141 gtagaacgtt caatgcgtgt acttgatggt gcggtgatgg tttattgtgc agttggtggt
    13201 gttcaaccac aatctgaaac tgtatggcgt caagctaaca aatataaagt gccacgtatc
    13261 gcgttcgtaa acaaaatgga ccgtacaggt gcaaacttct tacgtgttgt tgagcaaatc
    13321 aaaacgcgtt taggtggtaa ctcagttgca ttacaacttc caatcggtgc agaagacagc
    13381 ttcaaaggtg ttgttgattt aatcaaaatg aaagcaatca actggaacga agctgatcaa
    13441 ggtatgacct tcacttatga agatattccg gcagatatgc ttgaagcttg tgaagaacac
    13501 cgtgcaatgc ttgttgaagc agcagctgaa gcttctgaag aattaatgga aaaattcttc
    13561 tctggtgaag aattaactga agatgaaatc aaagcagcat tacgtcaacg tgtattagca
    13621 ggtgaagtaa tccctgtttg ctgtggttct gcatttaaaa acaaaggtgt acaagcaatg
    13681 cttgatgcgg taatcgatta cttaccggca ccaactgata ttcctgcaat taaaggtatc
    13741 aatgaagatg aaactgaagg tgagcgtcac gcaagcgacg atgagccatt tgcttcatta
    13801 gcattcaaaa ttgcaacaga cccattcgta ggtaacttaa ccttcttccg tgtttactct
    13861 ggtgtaatta actctggtga tacagtttac aactcagtaa aacaaaaacg tgaacgtttt
    13921 ggtcgtatcg tacagatgca cgcaaacaaa cgtgaagaga tcaaagaagt tcgtgcgggc
    13981 gatatcgctg cagcaatcgg tttaaaagat gttggtacag gtgacacatt atgtgcaatc
    14041 gatgcaccaa tcattcttga gcgtatggaa ttccctgagc cggtaatctc tgttgcggtt
    14101 gaaccaaaaa ccaaagctga ccaagagaaa atgggcttag ctttaggtcg tttagcacaa
    14161 gaagaccctt cattccgtgt tcacacagat gaagaatctg gtgaaacgat catttcaggt
    14221 atgggtgagt tacacttaga catcatcgtt gaccgtatga aacgtgagtt taaagtggaa
    14281 gcaaatatcg gtaaaccaca agtatcttac cgtgaaacta tccgtactcg tgttaatgat
    14341 gttgaaggta aacacgcaaa acaatctggt ggtcgtggtc aatatggtca cgttgtgatc
    14401 gacttatacc cattagatgc tgaaggtccg ggttatgagt ttgtaaacga gatcaaaggt
    14461 ggtgtaatcc ctggtgaata cattcctgcg gttgataaag gtatccaaga acagcttaaa
    14521 tctggtccgt tagcaggtta cccggtagta gatttaggtg tgcgtttaca cttcggttca
    14581 taccacgatg ttgactcatc tgaacttgcg tttaaacttg ctgcatcatt agcatttaaa
    14641 gcggcgttcg caaaagcaag cccggtatta cttgagccaa tcatgaaagt ggaagttgaa
    14701 actccaccgg attacgtggg tgatgtaatc ggtgacttaa gccgtcgtcg tgcaatggtt
    14761 aacggtcaag aagcgaacga gttcgttgtt aagatcaatg ctgaagttcc actttcagaa
    14821 atgtttggtt atgcaacaga cttacgttca caaactcaag gtcgtgcatc atactctatg
    14881 gaacctttaa aatatgctga agcaccgaaa aacgttgctg atgcaattat tgaagctcgt
    14941 agaaaataat ttgtttaacc tgagccatag caatagggct atggctcatt ttttaggaag
    15001 atattaaagt gtctaaagaa aaatttgaac gtacaaaacc gcacgttaat gtgggtacaa
    15061 tcggccacgt tgaccatggt aaaacaactt taacagcagc aatcactacc gtattagcaa
    15121 aacacttcgg tggtgcagct cgtgcatttg accaaatcga taacgcgcca gaagaaaaag
    15181 cgcgtggtat caccatcaac acttcacacg ttgagtacga tacagcaact cgtcactacg
    15241 cacacgttga ctgcccggga cacgcggact atgttaaaaa catgattacc ggtgcggcac
    15301 aaatggacgg cgctatctta gtagtagcag caactgacgg tccaatgcca caaactcgtg
    15361 agcacatctt attaggtcgc caagtaggtg taccatacat catcgtattc ttaaacaaat
    15421 gcgacatggt agatgacgaa gagttattag aattagttga gatggaagtg cgtgaacttc
    15481 tttcacaata cgacttccca ggtgatgaca ctccaatcgt acgtggttca gcgttacaag
    15541 cgttaaacgg cgtagcagag tgggaagaga aaatccttga attagcaaac cacttagaca
    15601 catacattcc agagcctgag cgtgcgattg ataaaccatt cttattacca atcgaagacg
    15661 tattctcaat ttcaggtcgt ggtacagtag taacaggtcg tgttgagcgt ggtatcatcc
    15721 gcactggtga tgaagttgaa atcgtaggta tcaaagatac agcgaaaaca accgtaacag
    15781 gtgttgagat gttccgtaaa ttattagacg aaggtcgtgc gggtgagaac gtaggtgcat
    15841 tattacgtgg tactaaacgt gaagaaatcg aacgtggtca agtattagcg aaaccgggtt
    15901 caatcactcc acacacagac ttcgaatcag aagtttacgt attatcaaaa gaagaaggtg
    15961 gtcgtcacac tccattcttc aaaggttacc gtccacagtt ctacttccgt acaacggacg
    16021 taacaggtac aatcgaatta ccggaaggtg tagagatggt aatgccgggc gacaacatca
    16081 aaatgactgt tagcctaatt cacccaatcg cgatggacga aggtttacgt tttgcgattc
    16141 gtgaaggtgg tcgtacagta ggtgcgggcg ttgtagctaa aatcatcaaa taattaagat
    16201 tgtttgataa attgaaaagc taaataaaaa ctagaaagag gcatatcgaa aggtatgcct
    16261 cttttgcttt tatgccgatt aagctagcca tatcatatca tttcatttgc aaaaatcggt
    16321 gaaaaaagac cgcttgtagg caagcccatt gacaagcagt cagattttag ggatttttta
    16381 caaaactgtt tatttgcgaa tgagtttctt ctcgacagtt tcttgataga acgctacaat
    16441 aaccgtctat ttgtatatct tttttatatc cctaaaccga ggtttaagaa tgtcattttc
    16501 aattgaaaca ttagaaggct taaaacgccg tgttactatt aacgtaccag ctgataaaat
    16561 cgaagcagca tacaaagaac aattaaaagg ctatgcgaaa aatgctcgtg tagatggctt
    16621 ccgtaaaggt aaagtgccac actcaattat cgaacaacgt tttggtattg cagcccgtca
    16681 agatgtgtta tctgatgaaa tgcaacgtgc attctttgaa gccgtcattg ctgaaaaaat
    16741 caacttggca ggtcgcccta ctttcacgcc aaacaactac caaccaggtc aagacttcag
    16801 ctttactgcg gaatttgaag tattcccaga agtggaatta aaaggtttag agaatatcga
    16861 agtagaaaaa ccggttgttg aaatcgcaga cgctgattta gacaaaatgg tagatgtatt
    16921 acgcaaacaa caagcgactt ggtcagaaag ccaagaggct gcaaaagccg aatctcgtgt
    16981 aactattgat ttcgttggtt cagtagatgg tgaagaattc gaaggcggta aagcatcaga
    17041 cttcgtgtta tttatggggc aaggtcgtat gatcccgggg tttgaagacg gaatcgtagg
    17101 tcgtaaagcg ggtgagcaat tcgacattga tgtgactttc ccagaagaat accacgctga
    17161 aaacttaaaa ggcaaagcag cgaaatttgc aattaccttg aaaaaagtag aagagatggt
    17221 attaccggaa ttaaccgaag agtttgtgaa aaaattcggt aatgcaaaat cagtggaaga
    17281 attacgcgca gaaattaaga aaaatatgca acgtgaactt aaaaatgcag tcacttcacg
    17341 tgtgaaaact caagtaatca acggcttaat tgctcaaaat gatgttgaag tgccggctgc
    17401 tgcggttgaa gaagaaatca acgtattacg ccaacaagcg gtgcaacgtt ttggtggtaa
    17461 gcctgaaatg gcagctcaat taccggctga attatttgaa gcagaagcta aacgccgtgt
    17521 tcaagtgggc ttattattat cttcaatcat cggttctaac gaattaaaag tagatgaaaa
    17581 acgtgttgaa gagatgatcg cagatatcgc ttcagcttac gaacaaccgg ctgaagtggt
    17641 tgctcactat gcgaaaaacc gtcaattaac tgaaaatatc cgcaatgtgg tattagaaga
    17701 gcaagcggtt gatgcagtgc tagcgaaagc gaaagtgact gaaaaaacaa tgtcatttga
    17761 cgaagtaatg tcacaacaag ctcaataatt tccttataag gtgggctttt gctcaccttt
    17821 tattactttt acaagcggtt aaatttagtg ataaatttgc atcaaaacga ccgcttattt
    17881 tttgatgtta aggaaattga attatggaac aactaacttt tgctcaacaa ttagagcaat
    17941 tttttgccaa tcataccttg atggtgtttg cttgggttgc attattgatt gcggtaattt
    18001 ttagctttta taaaagtgca acgcaaaaat ataaaattgt cgataacgca caggctacac
    18061 agctgattaa taaagaagag gcagtagtgg ttgatttacg ttctgatgaa gagttccgtg
    18121 ccggtcatat tattgatagc attcacgtgt taccgtcaga cattaaagca gctaaaatca
    18181 atcagattga taaatacaaa gctcgcccgg taattgtagt agacactaat gacttcactt
    18241 caggtggtgt tgcggcagat cttgctaaac aaggctttag cagagtttat gtattaaaag
    18301 aagggattgg cggctggcgt gcagcaagcc taccaactat taaaaaacat aaataatcta
    18361 ttattaagga aattttatgt cagaagaaaa tcaagttgca tcaacagaag aagctacaca
    18421 aacccctttt gagcttcaaa ttcaacgcat ttatgtaaaa gatgtttcat ttgaagcacc
    18481 aaatttaccg actattttcc aacaagagtg gaaaccacaa ttaggctttg agttagatac
    18541 tgaaaccaaa gaaattggtg aagatttata cgaagttacc ttacacatta cggtgcaaac
    18601 tacgttagaa gacagcaatg atgtcgcttt catttgtgaa gtaaaacaag caggtgtgtt
    18661 tactattaaa ggtttagaag gcattcaact tgctcactgc ttagcttcac aatgtccgaa
    18721 tgtgctttat ccttatgctc gtgagctaat ctcaagcctt gtgaatcgtg gtacattccc
    18781 ggcattaaat ctctcaccgg taaactttga tgcgttattt atggattatc tccaacgcca
    18841 agaagaaagt gcagaagagc cggctttagc gaactaagca ttttagatag aaaataggta
    18901 tgcaaggcat acctattttt ttacaagcgg ttattttttc tactattttt tgcaattttc
    18961 taaataagcc gaacagagga aatatgagtg aaatctattc tgccccaatc acggtattag
    19021 gtgcaggttc ttatggaaca gctttagcca ttgccctttc tcgaaatggt cacaaaacct
    19081 atttatgggg gcataatccc gacaaaatgg ccgttttggc atcagagcga atgaaccaag
    19141 attttctgcc tgatattgta ttcccggaag ccttagaaat tgtcgcagat cttgctacag
    19201 cggtacaaaa atcgaaagat ctgctgattg tggtgccaag tcatgtattc tctgaagtat
    19261 tggctcaaat caagcctttt ttgtcccaag atcaccgtat aatgtgggca accaaagggc
    19321 tggagcgaga taccgggcgt ttgttgcaaa cggtagctaa ggaaattttg ggggaaattt
    19381 acccgcttgc ggtgctttcc ggtccgactt ttgccaaaga actggcggca ggcttgccaa
    19441 cagcgatttc gcttgcctca actgatcctg tttttgccga tcaaatgcaa aaacggagtc
    19501 actgttccaa agcgttccga gtttacctca acaatgatat tatcggtgtg caactcggtg
    19561 gggctattaa aaatgtgatt gcaattggtg ccggtatttc agacggaatg ggattcgggg
    19621 cgaatgctcg taccgccttg attactcgag ggctggcgga gattagccgt ttgggtgttt
    19681 cgctcggggc tgatccgaaa acctttaccg gaatggcggg gcttggagat ttagtgctga
    19741 cgtgtaccga taaccaatcc cgaaaccgcc gatttggttt ggcgttaggg caaggaaaat
    19801 cggcagaagt cgcgatagcg gaaatcggtc aagtggtaga aggattttat aataccaaag
    19861 aagcctattt gctcgctcaa acacagggcg ttgaaatgcc gattgtagaa caaatttacc
    19921 aaatgttatt ttgtggcaaa caggcttcgg atgtggtgaa aaccttgttg gggcgtgaac
    19981 gaaaaggcga ataaagaaag gagaataaaa tgcagcagag tgaaattaat cagatttggc
    20041 aagcaattcg agatgaagcc aaagagctgg cgaattgtga acctatgtta gcaagttttt
    20101 tccacgctac cattttaaaa caccataatc taggcgatgc gttaagttat attttggcga
    20161 ataagttaga aaacccgatt atgccggcaa tcgccttaaa agaaattatt gaggaagctt
    20221 atcgagcaga gccacaaatt attgctagtg cagcttgtga tattaatgcg gtcagaacta
    20281 gagatcctgc ggtggacaaa tggagtacac ctctgctgta cttaaaaggc ttccacgctt
    20341 tacaaagcta tcgggtgacg cattatcttt ggaatcaagg caggaaagca ttagcggttt
    20401 atttacaaaa tgaaatttct gttgcctttg atgtggatat tcatcctgcg gcaaaggtcg
    20461 gttgcggaat tatgtttgac cacgccaccg gtattgtggt gggtgaaacc tctgtgatcg
    20521 aaaatgatgt ctcgatttta caaggtgtaa cactaggcgg tacagggaaa gaaaatggcg
    20581 accgccaccc gaaaatccgt gaaggcgtga tgattggagc cggtgcaaaa attctcggta
    20641 atattgaaat cggacgctat tctaaaatcg gggcaaattc agtggtgcta caacctgtgc
    20701 ctgatcacgc cacagcagca ggtgtaccgg ctcgcattat cggcaaatcc tctgaacaaa
    20761 aaccggcttt tgatatgaat caatactttg aagatgagca aggtttgttt ggtgatggga
    20821 tttaggtaag agttattcct ttaatttatg atttagacat tgctaagtac aagttgcaat
    20881 taacctttaa tgattttcag aactactata atggtaaagg ggatttaact atgttttctt
    20941 tttatggtaa gaaaacatgg gaaaatggca tttatgtagg gattgatggt agcattgggc
    21001 gtgcgaataa caaattaagc catcaaagcc agacgataaa actagccaga aatgtatatt
    21061 ctttaggatt aacggtaggt aaaacgttgg aagttgcaag ttttaaccta caaccgtcat
    21121 ttggtatgcg ctatcatcat ttaacatctg caaatgccca attagagaac acaaaatttg
    21181 agactgatag ggtagatctt ttggccattc aagctggttt agcattaaat aaaactttta
    21241 tatttaatga attaaaggta aaacctgaat taggaagcta ttttgttgat gcaagccacg
    21301 gaacacttaa aactaagtta aatgaatttt ccttaaatca aaatataggc cgttatttta
    21361 agcaagaagt agggattaca ctccactata aaggggtatc aagttcggta catgctggct
    21421 ttacaaaagg aaatacatta caagaacaaa aattcatttc actcaaagtt ggatatgagt
    21481 ggtaagcttt atgtaacctg aagctacact tgaatcggtt caaacataat gttactaaaa
    21541 aagccttgaa acattgattt tcaaggcttt ttaggtatcg gttgaaccgt ataggattat
    21601 aatttggtgc tggggtcatc tgaattgtat cacttcaagc attgataaat aagggttttg
    21661 gttaattcaa attttatttg tactcctaaa tatactccta aaattcaaag tgccttattg
    21721 cttaggctat tttgtgtaca attattcgga tcgtgtatag ggaaatttag ttcgtagttt
    21781 tctatagtag tttaagttta taaagaaaaa atttaaaact ttttgaa
//
LOCUS       DANLXK010000030        21557 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.030, whole genome shotgun sequence.
ACCESSION   DANLXK010000030 DANLXK010000000
VERSION     DANLXK010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21557
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(47..122)
                     /locus_tag="PXD88_000941"
     tRNA            complement(47..122)
                     /locus_tag="PXD88_000941"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(87..89),aa:Asn,seq:gtt)
     gene            complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXD88_000942"
     CDS             complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXD88_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL6280534.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXD88_000943"
     CDS             complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXD88_000943"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL6280535.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2337..2954)
                     /locus_tag="PXD88_000944"
     CDS             complement(2337..2954)
                     /locus_tag="PXD88_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL6280536.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3022..4233)
                     /locus_tag="PXD88_000945"
     CDS             complement(3022..4233)
                     /locus_tag="PXD88_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL6280537.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
     gene            4430..6361
                     /locus_tag="PXD88_000946"
     CDS             4430..6361
                     /locus_tag="PXD88_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280538.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDESTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
     gene            6640..6897
                     /locus_tag="PXD88_000947"
     CDS             6640..6897
                     /locus_tag="PXD88_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6280539.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(6944..7564)
                     /locus_tag="PXD88_000948"
     CDS             complement(6944..7564)
                     /locus_tag="PXD88_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL6280540.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(7566..8219)
                     /locus_tag="PXD88_000949"
     CDS             complement(7566..8219)
                     /locus_tag="PXD88_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL6280541.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            8268..8927
                     /locus_tag="PXD88_000950"
     CDS             8268..8927
                     /locus_tag="PXD88_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL6280542.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(8964..10010)
                     /locus_tag="PXD88_000951"
     CDS             complement(8964..10010)
                     /locus_tag="PXD88_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL6280543.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(10010..10963)
                     /gene="dusC"
                     /locus_tag="PXD88_000952"
     CDS             complement(10010..10963)
                     /gene="dusC"
                     /locus_tag="PXD88_000952"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL6280544.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(11041..11667)
                     /locus_tag="PXD88_000953"
     CDS             complement(11041..11667)
                     /locus_tag="PXD88_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL6280545.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(11667..12524)
                     /gene="djlA"
                     /locus_tag="PXD88_000954"
     CDS             complement(11667..12524)
                     /gene="djlA"
                     /locus_tag="PXD88_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL6280546.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(12572..13282)
                     /locus_tag="PXD88_000955"
     CDS             complement(12572..13282)
                     /locus_tag="PXD88_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6280547.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(13297..13449)
                     /locus_tag="PXD88_000956"
     CDS             complement(13297..13449)
                     /locus_tag="PXD88_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280548.1"
                     /translation="MNFWNSLSPLFKAIFCVLLSALSFAIMAAFLRLSGDVPIAQKAI
                     FRNAQH"
     gene            complement(13518..14003)
                     /locus_tag="PXD88_000957"
     CDS             complement(13518..14003)
                     /locus_tag="PXD88_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL6280549.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAA
                     GEFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADER
                     GTPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLE
                     Y"
     gene            complement(14030..15316)
                     /gene="tolB"
                     /locus_tag="PXD88_000958"
     CDS             complement(14030..15316)
                     /gene="tolB"
                     /locus_tag="PXD88_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL6280550.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(15332..16555)
                     /gene="tolA"
                     /locus_tag="PXD88_000959"
     CDS             complement(15332..16555)
                     /gene="tolA"
                     /locus_tag="PXD88_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL6280551.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(16569..17006)
                     /gene="tolR"
                     /locus_tag="PXD88_000960"
     CDS             complement(16569..17006)
                     /gene="tolR"
                     /locus_tag="PXD88_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL6280552.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(17148..17828)
                     /gene="tolQ"
                     /locus_tag="PXD88_000961"
     CDS             complement(17148..17828)
                     /gene="tolQ"
                     /locus_tag="PXD88_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL6280553.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(17850..18251)
                     /gene="ybgC"
                     /locus_tag="PXD88_000962"
     CDS             complement(17850..18251)
                     /gene="ybgC"
                     /locus_tag="PXD88_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL6280554.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
     gene            complement(18414..18701)
                     /gene="ybgE"
                     /locus_tag="PXD88_000963"
     CDS             complement(18414..18701)
                     /gene="ybgE"
                     /locus_tag="PXD88_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL6280555.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLVK"
     gene            complement(18701..18799)
                     /locus_tag="PXD88_000964"
     CDS             complement(18701..18799)
                     /locus_tag="PXD88_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL6280556.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(18814..19947)
                     /gene="cydB"
                     /locus_tag="PXD88_000965"
     CDS             complement(18814..19947)
                     /gene="cydB"
                     /locus_tag="PXD88_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL6280557.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(19960..21510)
                     /locus_tag="PXD88_000966"
     CDS             complement(19960..21510)
                     /locus_tag="PXD88_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL6280558.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         6597 a         4771 c         3933 g         6256 t
ORIGIN      
        1 tataaaagga gacaaataaa acaagaacaa aagaaaaata aaatcttggc tcctcctgcg
       61 ggactcgaac ctgcgacata tggattaaca gtccaccgtt ctaccgactg aactaaggag
      121 gaattaacgg tgtaaataat aggctaaaac gttttagccg tcaaataaaa aaaataaact
      181 gtcgttcatt ttttacattt cttgacattt tttcgccaat aagtatgaga aaaatactta
      241 ataagaggta caaaccggac agttattttg cttaggtaat gccatttctc tgacagaaaa
      301 atgcaagccg tcaatcatta acaattttcc ggaaagagtt ctgccgatat taagtagcac
      361 tttaattgct tccaacgctt gaatactgcc tatgatgcca acaatcggag caatgacccc
      421 cgcttcaaca caacttaaag tcgcatcacc aaacaacctg cttaaacatt catagcacgg
      481 ttcttgttct tgataacaaa atacactcac ctgcccttca aatcgaattg ccgaaccgga
      541 aacaagcggt cgtttttgct taaaacattg caaatttaac tgattacgca cagtaacgtt
      601 atcggtacaa tccagcacta aatctacatt tgcaatcagc ttggctaact gctcatcgga
      661 acatcgctga ttgatagttt caatctgaat gttcggatta atcgccgcta atcgagcttt
      721 ggcagattcc acctttggct gcccgatagt cgcatcggta tgtaaaattt ggcgttgcag
      781 attagaaagt gagaccagat caaaatccac caaagtcaaa tgcccaacgc cggcagaagc
      841 taagtattgc gatgccgcac agcccaaacc acctaaaccg acaatcaaca ctcggctggc
      901 ttttaacttt tcctgcccgt caaaatccac gctttttagg ataatctggc gattataacg
      961 tagcatttcg tgatcggtaa gttccatttt tacacctaaa gagtaaacga tggcgcaagc
     1021 gtccacgctt gtgcctatat ttttattgct agcacaagcg tggacgcttg cgctatctta
     1081 attcattaat acatcagcga attaaacggc tgaatagtga ctttttcccc agcatcaaca
     1141 ttgcctcgtt ctgcttctag cacaataaaa cagttacttt cattaaaagc gctgaaaata
     1201 tgtgagcctt gcgtgccaac tgcacgaact tctaactcac ctttttcatt ggcatagtaa
     1261 tagccccgtt ggaaatcttg gcgaccgacc gcttttttca attttccggc actgcaagcg
     1321 gttagatttt gggttaattt tgcaatttta tctgtcgata aacccgaaag tttggctaac
     1381 gccggttgcg ctaattggta gaaagtcact aatgcagaga cagggttgcc cggcagccca
     1441 aaaaaccaag cctgttctaa tttaccgaat gcaaaaggct tgcccggctt catcgcaatt
     1501 ttccagaaac cgatttcgcc taatttttcc agtacatctt tggtaaaatc tgcctctccc
     1561 acagatacgc cgccactggt aatcaacaca tcggcttgct gttgggcttg cctgaaagtt
     1621 tgctcaaaca gaattgggtc atcaggcaaa atcccaaaat ctaaaatctc gcagttgagt
     1681 ttttccagca ttaaacgcac cgcaaaacgg ttggtgtcgt aaatttttcc ctcactcaaa
     1741 ggctcgccaa ctgaggttaa ttcatcgccg gttgaaagaa ttgccacttt taattttaca
     1801 aaaacaggca cagaagcaat accgagtgaa gctagcaacg gtaaactggc tacattcaat
     1861 aatgagcctt ttttcaagac caatgccccc tgtttaacat cttccccaat gcggcgaatg
     1921 ttactgccta attttggaat atggttaaag gttacagagc catcggaatt taacgtagtt
     1981 tcctcttgca ttacaacggc atcaacgccc tttggcacta atgctcccgt cataatccgc
     2041 acgcattcgc ctgcctttat ttcgccgtta aacgggttac cggcaaaggc tttaccagcc
     2101 acattcaagg ttaaattttg tgctaaatct gaaatacgaa ccgcgtagcc gtccatcgcc
     2161 gaattatcaa aattcggtac attaatcggg gaaaaaatat cctctgccaa cactcggtta
     2221 gcacactcat ttaacggaag ttgttccacc aatttaggtg tcgataaacg agcaagcata
     2281 ttatctaacg catcactcaa agccaaaagt gccataattt cctacctatt caacgtttag
     2341 ctaatttgta caaagaaatc ccgtacgcca atcaacagat tattcaccgc aatcgcagcc
     2401 agaattaacc ccatcactcg gctgataatc gcagcccctg cattaccaat aaggtgctga
     2461 atacggtttg ccgctaatag caacaaatag gtaataaaga gtaccaaaag cataatgccg
     2521 gcggtgataa tttgatcgcc gatatgaaaa cggtgattgt cggttaataa tacgattgcc
     2581 atcatcgccc cgggagaagc aatcgacggt acagctagcg gataaaccgc caattcattc
     2641 agattactgc tgatccgcat ttcttgctcg ggcttgcttt cgccaaaaat catcgttaaa
     2701 gcaaataaca acagcactaa gccgcctgcc gcttggaatg caggtaacgg aatctgcatt
     2761 gattctaaca gcacttgccc accgataagg aagaaaatca aaataccggc ggcaatcaag
     2821 accgcattta gtgcaatttt acgccgtgct tcaatcggca aaccaatggt ttttgccaaa
     2881 taaacaggaa cagaaccaat cgggtcgatc accgcccata aaaccacaaa ttgtaccgct
     2941 aatgaatcaa acatattctc tcctgttatc ttgataattt gcaaaatttt agcataaaac
     3001 aaccgcttgc acggcttttt cttacagata gctcaccggt aacgctacca aattttcact
     3061 taaataaagt ttggtcggat attggttaat aatcgctccc tgccctaatt tccattcact
     3121 agaaactgag tttagcaagt caaaactttt tgccattttt ttggttgggc ttgccgtgac
     3181 cttaatttct atcggataaa gcgtgcgatc atattcaata attaagtcga tctctttctg
     3241 gttagtatca cggtaaaaat aaatcggcgg ctcaattcct tgattatgaa aggattttat
     3301 aatttggctt accacaaagg tttcaaagaa ctgccagctt tttgcccctt gagcaatagt
     3361 ttcgggggta agccatttgg ttaaatacgc cattaacccg gtgtctagaa aatacacttt
     3421 tggggtctta attgcccgtt tcaaatgatt gttgtggtat ggctggagca aatagataat
     3481 gccggaagtc tgcaaaatgg cgacccaacg tttaatcgtt tcattcgata ctccaacttc
     3541 ttgagcaata ttactgtaat tgagtagctc accactacga gaggcaatag agaccataaa
     3601 acgggtaaaa tccgttgtgc tggcaatatt ggttaattgg cgaacatctc gctcaatgta
     3661 ggtcgctaca taagagcgat aataaatctc ccaatccacc tcttgtgcat ataaacgagg
     3721 catatcgcct ttatggataa gctgccagat gttctccggt gattttaatt cttgctcccg
     3781 agctaacaaa tagtcggttg tcggtaaaaa aggttgatcg aacttcaccc ctaaaatttc
     3841 acgcaacgaa agcccttgta attttaaaat agcaatacga ccggcaagtg tttcactcac
     3901 attctgcatt aattcaaagg cttgcgaccc cgaaagtaaa aacaaaccgt tttgctgttt
     3961 tttatcaatt tctaacttta ataacgcaaa aatttcaggc acatactgta cttcgtctaa
     4021 aataagcttg ccttgatggt ttaaaaaaaa caggcgagat tcttgtttag ccagctccag
     4081 caacattggg tcatcaaaag taatatattg atagccctca ccaatatgtt gtaacaatgt
     4141 cgatttacca acctgtcttg cccctgtcac taaaacggca ggaaattgcg ccacgagtcg
     4201 ttttaacagc gattgcattt gccgagaaat catttttcct ccaaaatagc ctaaatcaag
     4261 tttaacctca tatataatgt tgaattaaac ttaatttaaa ttatttttta agtttaattc
     4321 aacacagaat attgaattaa actgaatttc ttattttagt tcacaaagca atggctttgc
     4381 ttttttatgc taaaatacgc aaaattttta acaaaataga ccgcttgcaa tgatcttttt
     4441 tacagactta attttaaaac gagggcattc cgttctcatt gataacagct ccgttaccat
     4501 tcacaccggg cagaaagtcg gtttggtggg aaaaaacggc tgtggcaaat cctctctttt
     4561 tgccttactg aaaaatgaat tacaacctga aggtggcgat gtatcgttgc cgaaaaactg
     4621 ggcgatctcg tgggtaaatc aagaaacgcc tgcgttagct atttcagcgt tagactatgt
     4681 gattcaagga gatcgggaat atacccatct tatggctgag ctagatatcg caaatgaaaa
     4741 gaatgacggc aaccgcattg cgattatcca tactcaactt gataccattg atgcttggac
     4801 aattcaatcc cgtgccgcta ccctgcttaa cggcttgggg tttagcaccg aacaactgca
     4861 actgccggtg aaatccttct ccggtggctg gcgtatgcgg ttaaatttgg cacaagctct
     4921 gatttgtcgt tccgatctgt tattgcttga cgagccaacc aaccacttag acttagatgc
     4981 ggttatttgg ttggagcgtt ggctgagtaa ctatcgtggc actttattgt taatttcgca
     5041 cgaccgtgat tttctcgatc cgattatcga tcgggtgatt catattgaac atcaaaagct
     5101 caatgaatac accggcaatt acacctcgtt tgagattcaa cgtgcgacca aaatcgccca
     5161 gcagaatgcc gcttatcagc aacagcaacg taaagttgct catttgcaga gttttatcga
     5221 tcgctttaaa gccaaagcga ctaaagcgaa acaggcacaa agccgaatta aagcgttgga
     5281 aaaaatggag cttattgccc cagcctatgc tgattcgccg tttgaatttg aatttcgccc
     5341 accgcttgca ctgcctagcc cgttattaat gatggaaaaa gtcagtgccg gctatgcgga
     5401 aaaaacggtg ttggaatcgg tcaaactgaa tttggttccc ggctctcgta ttggtttact
     5461 cgggagaaac ggtgcaggga aatccacgct gattaaatta ttggcgggcg aacttccgcc
     5521 ccaaaacggc tcaattcaac tggcaaaagg cgtgcaactc ggctatttcg cccaacatca
     5581 ggtggataca ctacgttttg atgaaagccc actttggcat ttacaaaaac tcgcaccgga
     5641 aaaaaccgag caggaattac gcaattattt aggcggtttc gattttaaag gcgataaagt
     5701 ggtacaagct gtgaaatcat tctccggcgg agaaaaggcc cgtttagtgc ttgccttaat
     5761 tgtatggcaa cgcccgaatt tactgctatt agatgagtca accaaccatt tagatttaga
     5821 aatgcgacaa gccctggttg atgcactgac ctattacgaa ggctcgctag tggtggtttc
     5881 gcacgaccgc catttattgc gtagcaccgt gaatgaattt tatttagtgc acgaccgcaa
     5941 agtggaaaaa tttaaaggtg atttagacga ttaccaaaaa tggctcaatg agcaaaacgc
     6001 cttagccaac gagccgaaat ccgtacttgc aaaagattcg gcaaattcga ccgcttgctc
     6061 tagcaccaat gaaaatagtg cagctcaacg caaagagcaa aaacgcttag aggcagagcg
     6121 ccgccaacaa accgccccat tgcggaaaaa aattactcaa ctggaaaaag agttagaaaa
     6181 agcaaccgaa aaattaaata aactcgaagc aatgcttacc gaaagcgaca tttatgaagc
     6241 cgaaaataaa gcaaaactaa ctgaaacact tgcgaaacag ttagaggcaa aaaggctggt
     6301 tgaagaaatt gaaatgcaat ggttggaggc tcaggaggag tttgagacca tgttacgcta
     6361 gggttctaca agatagcgca agcgtccacg cttgtgccat ttaagggaac tatacacctc
     6421 aaaaaaacaa tgatcattaa gctagctttt ttataaattt aaaaacctat agattaaata
     6481 aataatgata ttaatagtaa aatcacgagt gcaactacac tgacgataat aaaatcaggc
     6541 atacttattc tccctataaa atgtggtaat gtaactacaa attaattata taatgaacct
     6601 aaaaaaggtt caacattatt tgtacctaat ataggtgcaa tgaaaaatct tagattatca
     6661 atacattcca gcgagcatat ttggttaaga gaactattct taaaacgccg tttggaacta
     6721 gggctaacac aacgcacatt aggagaaaaa atgggcgttc tttactcatt tatcggaaaa
     6781 gtagaaacag gagatcgcag attagatatt tttgaattta tcgcttattg caaagggtta
     6841 gatttagatc ctttatctgt attgcaagaa attgaacaac aatttcctca taaataaagg
     6901 cattgagtta taactcaatg cctttatttt ctatgtcaaa tctctacatg ctcggcttag
     6961 tctctgccag aatggcgtat ttattattca tttcctctgc ccaagcggtt aaatttgggt
     7021 aattttttgc aagatcgtag cctatcttat ctaagcggaa tgcccaccag tcaattaatg
     7081 ctactgcggt taatgtgcct aaattcagct ctgtgccaaa ctcttgcaat gcctcttcta
     7141 attgtctgaa cgaacggata ttgcgttcca ttaattgctc gtggcggctg acccaccatt
     7201 cattctcggg gcgagccata cgttcttgta ataaagttgg catcgtattt tccataatgc
     7261 cgtccgccaa attatgtaat gccaacactg cccagcgagg tttaccctct ttaggtaaca
     7321 gtggagtgtt attgcctttt tggtcaagat attcgctaat taacaaacta ccgaaaagcc
     7381 aacgtccgca gttgcgttgt agggcaggaa tacgtcctaa cgggttatct tgattatgtg
     7441 gcgaatttgg atccattgct tttgtcaccc gcaacatttc gactttatcg tctaattggt
     7501 ggtgtttaat caccgcaagg gctttgcggg cgaaagggct ggtggttgag taccaaagtt
     7561 tcatactatt ctccgtgttt gatgtgattg gatttgcaaa ttttttgcca aaaatgaccg
     7621 cttgtcggca aggcttgcac tgagattttc tcattttcgt attcaaaatc aagctgataa
     7681 gcgtgcaaat aaacacggtc ggcttggcta cctgaataga gtttatcacc taaaatcggg
     7741 ctgcccaaac ttttcattgc cactcttaat tggtgagttt tgcctgtttt gggttgcaaa
     7801 ataaaatgcc tgagcgagtc ttcaacagaa tgagaaataa attgcgttac tgccgggttt
     7861 tccttactgt ggcataattt ccacgctcca tttctgcttt tttgcatatc gccaacaatt
     7921 ctaccctgct ttttcttcgg ctttttatcg cttaatgccc aataggtttt gtagatttta
     7981 tgctgttcaa ataaatggta aaaccttgct gccgcctctt tattcaacgc taaaatcagt
     8041 aaacctgagg tgattttatc cagacggtga accagccaaa cctgctttac attcagttgg
     8101 cgagccacta attccgttaa gccgatttca gcctcatctt tatgcacact caagccttcc
     8161 ggcttattga taataataaa atcacgatgt tgataacaaa taggcaatgt tggggtcatt
     8221 ttgctataat ccttccaatt tttgactatt ttagcaagga aattacaatg gctgttacca
     8281 tttatttagt acgacacggc agaaccgtgt ggaatttgga aggcagatta caaggctcgg
     8341 gcgattccgc tttagtagaa gaagggatta tcggagcgaa gaaaaccggc attgcgttaa
     8401 aacatattcc gtttaccgcc gcctattcca gtatgcagaa acgggctcaa gataccgcaa
     8461 actacatttt agcagaaaat gaacgcagta atattccgca ttttcatcat aaaggcttga
     8521 atgaatttga ttttggcagc tgggaaggaa tgaaatctgt cgatttgcaa gaaaatgatg
     8581 aatattgggt gatgaaacgt acaccggcag aatatctggc aaaagcaaac ggtggcgagc
     8641 gatttgagca actttatcaa cgggtgactc aggcgttcaa tcaaatcgcc gagctacacc
     8701 aaaatgacgg caaagtgctg attgtttcac atggtatgac cttaacctta ctcacggctg
     8761 tgttaaaagg cattgcgtgg caagatttcc gcaatgaaga aaaacatagc tttgtgttca
     8821 atactgccat tacgaaagta gaagtagaga atggcaaagt aacggtgctg gaatttaata
     8881 ataccgacca tttggataat gtgccaacaa gccaatacaa acgataatat taagggcgga
     8941 acattgtccg cccatagcat tttctaatca gagaacactt tttctttcgt ttctgtttta
     9001 gcaaataccg tatttttgac cgaagtaagc aactcctgac gaatagctga aattcttggc
     9061 ttctcattcg cttgaaaagc aacaggacga caaaattcca ttgctttaat gccaaggcga
     9121 gcagtgagta aacccacacc aataccttgt gcggcacgga gcgataattt cgccgtaagg
     9181 ttttgcgaga agaaatccat tccaacatca gtagcgattt cggttgcacc ggcgaacacc
     9241 atatttttca gcaccatttt gaacagtttt aagcggctga tataacccaa ttccattcca
     9301 taggctttgg taattttatt cactaaagcg atatttcttg ccgccattaa caacacatca
     9361 actattgcca gcgggctaac cgccacaatc accgcatttt ctgccgcatt gcgggaaatc
     9421 atctgcttaa cctgtttatc tatcggcttt agcacatttt cgctaaacag atatagtacc
     9481 tctttggcat tataagcctc gttcagttcg cttttccaaa gttgctcggc ttgagcaatg
     9541 ctcggcaagt gattaagctg atttgcaata ttttcgcaaa atttgaccgc ttgttcgcca
     9601 tcattggaag gcagctgttc cagcaataat tggttactca tttgttgatt tttctgatga
     9661 tttcgcaaat acaccaactt tcgccattcg gaaataatcg ccccaacgcc caacaagctg
     9721 acaataaaaa agactatcga gaacgcaaaa tagatccact ctctttgctg gaacgtatca
     9781 atcaaccact gaatactttg agcaattacc gccacgccaa acaaggcaag tgtggcaagt
     9841 agtactcgaa tccaaaagcg ggaaggctta aggctttctt caataatcag ctccgcctca
     9901 actgcttttt cctcttcttc aataatcgca ttttcgagat caaactcttg tttaggttca
     9961 aaatgctcgg ttgtttttag ctcttcttca ttaaaaattt gcttactcat tattcctcca
    10021 ctgccttttc aatatgtgct tttagaccat catagccgtg ttcggttttc aagatatcaa
    10081 ataattctac cgcttgagga tattctttat ccaaataacg tagccattgt ttgatgcgag
    10141 caacgtggta aaaaccggta tcaaactgat tttccatctg aacgtactta aacaatagct
    10201 gtagcacttc attccacgcc attttcggaa cattatattt caccactttg cttaaattcg
    10261 gtgtgtttaa cgccccacgc cccatcatta atgccttgca agcggttatt ttttggcaat
    10321 ttttcgccga ttcaaaatcc caaatttcgc cgttggcgat aacaggaata gacagccgtt
    10381 gttgaatttc gccaatcgcc tgccaattaa ttctttctgc tcgataacca tcaactttgg
    10441 ttcgcccgtg aacggtaatt tcattcgctc cgccctgttc taccgcatcg gcaatttcaa
    10501 aacattggct aacggaatcc caacctaatc gcacttttac ggaaacgatt ttatcgcttg
    10561 gcacagcttc acgcatcgct ttggttgcac gataaatcag ttccggatct tttaataacg
    10621 aagccccacc attgctgcca tttaccgttt tagaggggca gccacagttg agatctaccc
    10681 cgtgtgaacc aagctcaatg gcaagagctg cattttctgc cagccactgt gggtgttgcc
    10741 ctaaaagctg tacccgcact ggtgtgccgg aatcggttaa tccgccttga tatagctcag
    10801 gggctaggcg ataaaaggtt ttcttcggta aacgttgatc gaccactcgc acaaattcgg
    10861 aaatacagag atcgtagtca ttcactgaag ttaaaaggtt gcggacaaaa gggtctaaaa
    10921 ccccttgcat cggggcaaga ataacgttag gaattggatt cattggtaaa ataaaaaata
    10981 caagcggtta ttttttctca acattttgca aaaaattggc aagaaacaac cgcttgaagg
    11041 ttaaaaatgt ctatcgtgaa tgcgcaaatc ggggcgagcg atcaggtaaa tcatcagtgc
    11101 ggttaatgcc ccaagagtat ccgcaagcat atctttttga gcgtcccaaa tatccccttg
    11161 cgagcctaga aattccacgc cggcattgcc accttcaatc acggcatatt gccattcaat
    11221 aatttcgtaa gctgccgcca ccgacataat gaaaaacagc gagaagaaaa atgctacgcc
    11281 cattccgcac ttgcgtttac gcagtaacca ttctgccatc gggaagctgt aaaaaccgat
    11341 aatgtaatgt gctactcgat caaaatggtt acgatcttca cctaaaatcg gggttagaaa
    11401 ttgatttgcc cactcaaacg gcacattggc aaaggtatat tttgccccga tcaagtgcat
    11461 aatcagccaa agcgacatca aaaaataagc taacccacta aactgaaatt tagggtaagt
    11521 gataattaaa agggcaaaaa cgataaaaat cggtatcact tccgcatacc aaactgcgcg
    11581 gtctgtcgga tttaaccctg accaaaccgc aatcacggta ataacaatcg ctaaaaatag
    11641 agggatgata tgcgagcgtg aatccattat ttccactctt tcactttaca aattaaatcg
    11701 tacgccgctt gaatttgttg agctttctct tttgccaact ccatcatctc atcaggcaaa
    11761 cctttagcgg ctaatttatc cgggtgatgt tcgttcatta acttacgata agcccgtttc
    11821 actgtatttt gatcgtcttg tgcggttacg cctaatacgg tataggctgc ctcaatgctt
    11881 ggttgtgcag gctgctgata actgccctga tagccacctt gagattgctg atgataactc
    11941 ccattttgct gataatagcc accattgcgg aattgttgag ctgccataat cattgcgatc
    12001 atctgctcaa attggaagcg agacattccc attgtttcgg caatcgtaaa cagaatttgt
    12061 tgctcgttca catcaagttg cccatcttgc aaggctgcct gcatttgcac ttcgacaaag
    12121 aaacgtaata agtcagttct tgccccacag gcttctctga actcttgaat gacttggcgt
    12181 aacgggaagt caggctcttt acctaaggta aaggcatttt gcgctaattg ctgggctgca
    12241 ctatctaatt ttaagcgagc cattaacgct cgggctaatt caatatccgc ttcagtaaca
    12301 cgcccttttg ctttcgcaat atgccccaac accgcaaaag tggtttgggt gaaaagcgat
    12361 tggcgagtta aatttttacc gaaaagactt gaacgaactg aacctaattc atagagtttt
    12421 ttatcggcta aatgcccgat aaaagcgcca agtatcccac caaataaacc gtgaaaaagc
    12481 tgatagccca agaaaaaacc gactattttt ccgataaatt gcattttttt atccttttat
    12541 agaaatgaat aaacgttatt ctaacaaaat tttactttga ttgcttttta gttaatacaa
    12601 acataagcca gcttgagaca aaaataattg cataacctag ccaactcaac atatccgggt
    12661 attgttcaaa gaacaacaac cctaaaattg cactaaatag cacagaggca taactataaa
    12721 ttgagatgtc tttcgccgcc gcatatttat aggcggtagt tacacaaaac tgcccgaccg
    12781 ctgaagttac ccctgctaac actaagtaga ttgtctgtaa attggttagc actacataat
    12841 caatggcgac aaaaggcaat aatatcaagg tcgaaaaggc agaaaaaaag aaaacaatgg
    12901 tattaggtga ttctactttt ttggtttttg ccaataacct taagcataaa taggcaatgg
    12961 ctgcaaacac agagccaatc acgccaacca gataaggcat aaagcgaata tcaactgccg
    13021 gtttgataat aaaaagtgcc ccgataaagg caataaggca taaaatccat tgcaggagag
    13081 atgctctctc ttttaaaaaa atcgcagaaa gaataattaa aatgaacgac gtgagtttgc
    13141 caatcatatc gacatcactt agcacaaggt gatcgatgat atatacacca cataaaatcc
    13201 ccaataaccc ggtgatggaa cggcttaata ataacaaacg attttctgca taaccaaaga
    13261 ataattggcg atttttccac acaatataac cgcttatcaa tgctgtgcgt tgcgaaaaat
    13321 cgctttttgt gcaatcggta catcccccga aagacgaaga aaagcagcca taatcgcaaa
    13381 gcttagtgcc gacaaaagca cacaaaaaat ggctttaaat aacggcgaga gcgaattcca
    13441 aaaattcata gcataaaggc ttttaataaa aataaagccc tgattattca gggcttcaat
    13501 ttagaatcaa ctaagaatta gtattctaat actgcacgac ggtttttcgc gtagtcagct
    13561 tctgagtgac ctaatactgc tggtttctct tcaccgtaag aaacagttga agtgttgtta
    13621 gcacctttag ctgctaagta acctttaact gcatctgcgc gacgttgacc taatgcgatg
    13681 ttgtactctg gagtaccacg ctcatcagcg tgaccagcaa tagttacgtt accttgagtt
    13741 tttgctaata attgagcgtg agcgtctaat aattgacggt attcaccttc aactgcatag
    13801 ctgtcaaaac cgaagtatac agtgttgtat tgtgctttta attgttcagc tgttaaacca
    13861 ccgaattcgc ctgctgcatt tgctgctgca tttgctgctg cgtttgctgc tgcgtttgct
    13921 gctgcatcat ctgatgagct gctacatgct gctaatgcga aagctggtac tgctaccatt
    13981 aatactttag caaatttttt catttgttgc tcctaataga gaaatattat tatttagtta
    14041 agtatggtga ccatgcaggg aatttataat gtccacctgc gccaggcaaa ttagctttaa
    14101 aacgcccatc tgcagacacc aattgtagca ctttactcgt acctttggta gagctataaa
    14161 taaccataat gccattcggt gaaatacttg gactttcgtc taagaaagtt gaactcagta
    14221 cttctgtgcc acctgaagcg agatcgcgtt tcacaactct atcaccggca atcatgatta
    14281 aattcttacc atcagatgat actttcgcat tatagctacc gctaccgccc attgggctag
    14341 caccaccacc tgatgaactc attctataaa cttgaggaga acctgcacgg tcagacgtaa
    14401 agtagattgt gctaccatct ggagaccagc ttggttcagt attatttcca gcattagcgg
    14461 tcaatttact tggtgtacca ccgccactac ctacaacata aatatttaac tcaccatctt
    14521 gatttgaggc aaacgcaatg cgagaaccgt ctggagagaa tgatggcgca ccattatgtc
    14581 ctttcaatgc tgccactaca cggcgagcac ctgaacgaat atcgtgaaca acaacctgcg
    14641 cttttttatt ttcaaatgtc acataagcta atctgctacc atctggtgac cactctggcg
    14701 acattaaagg ctctttactg gttgtaatag taaaggcatt aaaaccatca taatcagata
    14761 ctcgtaattc atacgatgat acgccacgtt gaaccacata cgcaatttta gttctaaatg
    14821 caccgcgaat ttgggttaat ttttcaaata cctcatcact tactgtatgc gcaccttgac
    14881 gaatttgggc tgccggaaca ataaatgaac cttgggcaat gacaccaccc gctgtacccg
    14941 atgtaccaag agtatcaatt aattgataag cgacattata accgccacct gtgctactca
    15001 cttggccaac tacaatatta tcaataccga tagcactcca ttgatctgcc accacttccg
    15061 ctgctgatcc cggttgagca ggcatttgag agcgttcaag cggtgtaaat ttaccactat
    15121 ttcgcaaatc atcagaaata atttgtgcaa catctgccgg cacaccgctg gctttaaatg
    15181 gcacaaccgc aatcggctga gccatactta caccttcatc aatagaaatt cgcacatcag
    15241 aatcagcaac cacctgagtt gtcaataatg ctgaaaagat gcctattaca cccgatatac
    15301 gagagaataa tttcatttgt agtcctctaa attatttaac ttttaaacta aaatcaagtg
    15361 ttggtgattt aaacatatta tataccgcat ctgatggtgc aggtggtact tttctagttg
    15421 ccactattgc acttaccgct gcatcacata ctgctttatc gccactgata acttgatagt
    15481 tagtaattgt gccatctcga cttaagaata tcttaacatc acattgtttt ccggcaaaac
    15541 ttggatcaac ccgatatcga gattgaatta atttcttaat tcgttgacca tatgcattac
    15601 catctacatt agtaccttgc cctaagccac ttgtaccacc agaaccttgt gatcctgctg
    15661 agtttttgtt accaccttta cttgaaccac caccgatgtc tccactattg aggaaatcat
    15721 caagtgcttt attgtttttc gcttgggcgg cttttgcctc agcagctgcc ttcgctttag
    15781 cttctttctc ggctttctct ttggcttctt tttctgcttt tgctttggct tctttctcag
    15841 ccttttcttt tgcttctttt tctgccttgg ctttagcttc tttttctgct ttttccttcg
    15901 cttctttagc ttcttttgcc tgctgttcct tcagttcttt ttgctctttt aactttttct
    15961 cagcttccgc tttcttctgc tgttcaagct tcttttcaag tgcttcttta gcttttttct
    16021 cttcttcagc ttgtttagca gcagcctcta aacgcttagc ttctgcatct gctttcagtt
    16081 ttgctgcttc agctgctttt ttacgagttg cttcttctgc ttgctgcttt ttaagctctt
    16141 cttgcttagc ttgttcttgc ttttgctgtt cttgtagttt ttgctgacgc tcaatttctt
    16201 gctgacgctg tttctcttga atcgccgcta actcagcttg tttctgtttt tggatctctt
    16261 ccggagtcgg tttatcttcc acatcttctt caacagcttc ctctttaggc tctacctttg
    16321 gcttcgatgc ttttgagcct tttttctctg ccaataactg cccatattca gcagccactt
    16381 gcccagtatc taccatcaca gcttcaaagc tatcgctatc gccaccactg ccaccagccg
    16441 cagcgagttc cgtcttagtg aaaagagacc cgagcaataa caacccgatt aacaatatat
    16501 gcaataagat cgaaacaata accgctagct ctagtctatc ttgttgagat ttcacacgtt
    16561 atccttggct atttaccttc tgtcattaaa cctaccgatt tcactccggc gtctttaagt
    16621 agtgtaatac ctttcataat ttcttcataa ggtactactt tatcaccggc aactaaaaat
    16681 aaggtattgt tatctttttg aaattgttcc cctgcatagg caacaacttc tgattcatta
    16741 atattctctt gcccattact ttgcacatag ttaccgtcaa ttttcaattt atattcacca
    16801 acacctgcca cctccaaaat cactggagtt ttatcttcat tagaaactga ttggctatgc
    16861 gtatcttccg gtaaattaac ttctacactt tgactgataa ttggggccgt tgccataaaa
    16921 atcagcaata ataccaacaa tacatcaaga aatggaacaa tgttgatttc tgatttaatg
    16981 tcattacgtt ttaaacgacg agacatatat tcctctttac aggtgcttag caccttaatt
    17041 gatctgaaat aaccggcaca gtgtcccggt ctcgaataat gcggttacaa gcggtctttt
    17101 ttacgaaaaa ctttacaaat tttcattaaa aatcaaccgc ttgtagatta tctttttgaa
    17161 aaagcctgac ggtgtaataa ggtcgtgaac tcatcaatga aattcacata cccttgctca
    17221 actttaccta aacgtaaatt caaacggtta tatgccatta ctgcaggaat cgccgcaaat
    17281 aaaccgatag ccgttgcaat taatgcttct gcaatacccg gtgcgactga ttgtaaagtt
    17341 gcttgcttaa ctgcacttaa tcccataaag gagtgcataa ttccccaaac cgttccgaat
    17401 aaaccaatat atgggctgat tgaacccact gtgcctaaaa acggaatgta gttttctaaa
    17461 ctttccattt cacggtttaa tgctaagttc atcgcacggg tagaaccttg aataatcgat
    17521 tctggcgcat ctgggttcgc ttgttgtaaa cgggtaaatt ctttaaaccc aacataaaag
    17581 atttgctctg aaccatttaa tgcatcacga cgattctcta aaccttggtg taaacggttt
    17641 agatcttccc ctgaccagaa tcgatcttca aaagcaaggg aatctttttt ggctttagtt
    17701 aaaattttgc tgcgctgaat aatcaccgcc caagacaaaa ttgagaatac aataaggatc
    17761 agcatcacga tctttaccac aatacttgct tctaaaaata acgaaagaag actaaattca
    17821 gtttgcatta ataaaactcc gaatagtttt taaatagaaa aataactttt ttgtaatgct
    17881 tgacgaatat catcaggaat tgcaaccggc ttcattttga ttaaatcaac acaagcgacc
    17941 gtaacatttg cctcactcag acaatcgcca tctttccaca atcgttgttt aaagataagg
    18001 gttgctttct tcaattctga gagtgttgtt tccacattta ataaatcatc taaacgagca
    18061 gggagcttat aatctatttc aatcctctta acaacaaaag caagggattg gctaaaaagt
    18121 tcctgctgtg agaaatgctg ctgtctcaaa aattccgttc ttgcccgctc aaaaaaattc
    18181 agatagttgg aatgataaac tactccgccg gcatcagtat cttcataata aacacgaatc
    18241 gggaaatcca taagcattat ttctctcatt caaaatgaaa aaacgcccaa aatttaggcg
    18301 caaattgtga gatattttag gatcagaaat attgttatgc aagtatattt tttggtaaat
    18361 tgcaaaaata ttttttatct atcaaaaata aaaatagaga cataaaaatg cctctattta
    18421 acaagtaaaa tccataatgc cggaataaca ataaggtaac ctagaagtgg taaaaaaatc
    18481 actttccaaa tagcagctcg gatttcaaat ccaattccat gtacccataa aatagccata
    18541 ccataaaata ccaacattgc taaatacggc gtttttccac caaaagaaag agcgaaagcg
    18601 gtcgaattta cccaaatagt tgcaaataat acagccgcta aaataaaaga aagggctttt
    18661 aacaagccct ttgctgttaa gttatagagt ttatgaatca ttactcgtca aacttacctg
    18721 ttttttcaat gctgatcgtg atgactgttg caaagaagat tgcaagcaat acacctaaga
    18781 cccaagttac ataaaacata ttgtgtctcc ttattagtaa gctgctttat tttcttctaa
    18841 ataactagca tctaaacgac catacatttt gatatatgac caaatagtat atgctaatac
    18901 taacggtaca aagataccag caacaaataa cattacagtt aatgttgtgt ggctagcagt
    18961 agcgtcccaa accgttaagc tcatttctgg atgagtaatt gacggcataa tgaatgggaa
    19021 cattgatact gcagcagtta aaatcacccc aacaatcatc aatgatgatg agaagaatgc
    19081 taaacctgaa cgatttgctt ttgaggcaat aatagtcagt aatgcaccta ctacaactaa
    19141 tgcaggaaca acccataata caggcatttc agcataattt ctaaaccatg caccagcttg
    19201 aaccgctaca gttttattcg tcaatagaga ttgtgcatta tgatctaact cgcttgtgat
    19261 cacaaaacca tctttaaaat ataaccatac acctgcaaga ataaatgcca ctaatacaat
    19321 agaagctgtc acttgtgcca cttttcttga gttgttatgt agctcatcag tagttttcat
    19381 ttgtaaccaa gttgcaccct gtgtggttaa catcattaag ctgataatac cgcacactaa
    19441 tgcaaatgga tttaataaac caaagaatga acccgtatat tgtgattggt taatattatt
    19501 aaattcaaat ggtacacctt gtaataagtt accgaatgca acaccgaata ctaatgatgg
    19561 aacgaaacca ccaataaata atccccaatc ccaagcacta cgccatttcg gattatcaat
    19621 ttttgcacga tactcaaaac ctacagggcg gaaaaataat gctgcaagca caagcaccat
    19681 tgcaatatag aaacccgaga acgaagttgc atagactgtt ggccatgcag cgaagatcgc
    19741 accaccagcg gtcaataacc atacttggtt accatcccag tgaggggcaa ttgtgttgat
    19801 cataatacga cgttcaacat tacttttacc aatgataggt aaaaggttta atacgcccat
    19861 atcaaaacca tcagtaattg caaagccaat taacaatacc gcaattaaga tccaccaaat
    19921 aaagcggaga atttcataat cgatcatttc taactcctat tatttagttg attgttcaaa
    19981 ataataacgg cctgttttta atgcactagg gccaagacga ccatatttga acattaaata
    20041 catttctaca actaagaata gtgtatataa accacacaat aagccgattg taaaccataa
    20101 atcacctgtt gttaatgcag agtttgacac accgacaggt aacatttcat agatagccca
    20161 aggctgacgg ccatattcgg caaggaacca accagattca atcgcaatcc aaggtaacgg
    20221 aagaccgaat aacaagcctc ttaataagaa acggctactt tctactttac cacgcatatt
    20281 ttgaataaat gctgtcgtaa tcaagataag catcaagaag ccagataaca tcattacacg
    20341 gaatgcccag aatgtagggc ctacatttgg aattgtatta tctgctgctt tttgaatttg
    20401 ttcttcagtc gcatcaacca cattaggtgt atattgtttt aacaataacc caaagcctaa
    20461 atctttttgt acagctttaa atgcttcttt atccgcctct gtataattgc cagaacgtaa
    20521 tttttctaat agtccgtagg ctaccatacc ggtacgaaca cgttgttcat taattacacg
    20581 aatatctttt aggcctttaa tttctttatc taaagaacgg gttgcaataa taccagctgc
    20641 ataaggaata tgaattgaga attcattttt catttccgca gtatttggaa tcacaaaagc
    20701 attccaagca gctggagcag gctgagtttc gaattcacct tccattgcag ctaatttagt
    20761 cggctgagct ttaccgattt cataaccaga ttcatcaccc ataatcagta cagagatgat
    20821 cgcaattaaa ccaaaacttg cacctactga gaatgaacgt tttgcaaagc ctaagtcacg
    20881 accttttaag atatagtatg aactaatacc taatacaaaa atagcaccac aaacatagcc
    20941 tgcggttaca gtatgtaaga atttagattg tgtaactggg tttaatacaa gttcagagaa
    21001 acttgaaagc tccattcgca tggtttcaaa gttgaattca gaagcaatcg ggttttgcat
    21061 ccaaccatta gcaactaaaa tccatagtgc agagaagtta gaaccaaacg caacacagta
    21121 agttgctaat aaatgtttcg ctttcgataa acgttcccag ccaaagaaga acaagcccac
    21181 aaaggtagat tctaagaaga acgccattaa accttcaatc gctaatggag cgccaaaaat
    21241 atcacctaca taatgagaat aatatgacca gttcatacca aactggaatt ccattgtaat
    21301 accagttgtt acccctaggg caaagttaat accaaataat ttaccccaga atttagtcat
    21361 atctttatat acttctttac ccgtagttac atacagggtt tccatcacca caaggacgaa
    21421 agaaagacct aatgtaagcg gtacgaataa gaagtgatag agtgcagtta gagcaaactg
    21481 caaacgtgag agttcaacta catctaacat ctcaaacctc ttatattaat atactaattt
    21541 gacaattaga ttactgt
//
LOCUS       DANLXK010000031        21031 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.031, whole genome shotgun sequence.
ACCESSION   DANLXK010000031 DANLXK010000000
VERSION     DANLXK010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21031
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..276)
                     /locus_tag="PXD88_000967"
     CDS             complement(<1..276)
                     /locus_tag="PXD88_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL6280559.1"
                     /translation="MNELYEKYKDEPSMLVAIADGEGNIGVLEDIFLYKKQLAFSYVT
                     PLERWNWLHQCNLNSYAPAPLSVIEFYIQNGVEINAQDCYGMTPLHYA"
     gene            complement(278..9922)
                     /locus_tag="PXD88_000968"
     CDS             complement(278..9922)
                     /locus_tag="PXD88_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL6280560.1"
                     /translation="MNKHCFRTIFSKTLQRIVVVSELAKLAGKSESESMTSGAILQKI
                     CKIRPLAFSLFCALGFVTLSDNAMAETLIIQADSTAPKNQQPIILQTANGLPQINIQT
                     PNDKGLSHNKYSQFDVAEKGAILNNSRTNTATQQAGMVQGNPYLARGEAKVILNEVNS
                     SKPSVMKGYVEVAGKKAEVIIANPSGLHCDGCGIINADRATLTTGKPQINQGNLEGFV
                     VEKGKVTVAGKGLDNSRVDYTDILAREAKINAGVWSKKETKVITGKNTVKRSNSDNNL
                     QIIHTNQPLAGEEKPTVAIDVGELGGMYAGKIHLIGTEQGVGVRNAGHIGASADTLTI
                     DSQGRIVNSGTFNAQRQVQLNAQHGIDNQGKIENKQGNIQLNSKADIQNSGSIVARGG
                     NIQKKAETKIQQSGETVAKGNITYTARQIHADKNSLIAAGVDVTDTAQGEVRKLEAQS
                     VAGKTIQLTAPEKTTVQGKNIASGKINVAAAEIDANQSQNNAHTVEYSAKSGDIQANS
                     AQFSANQIKLTTPKWLSTEGSQLTAEVIEAQQANLNARGSVWKQTGEQDFRLKAESIH
                     TDSARFSVGGHFEIDGNRLTNNQGLLSSGKRLGLNLNDAVDSVDGKLVAKGELSIRAP
                     LLNNQQGLILSGEKQAITVNTLKNQSGVITSQTEQTLDITSELQNQGGRISASGVAIN
                     AQSLDNREQGEISSVKELALTVSQQVDNRHGVIQSVGNLTLNSTLLDNQGGVLKSATD
                     ITLNVPTVLNNRISENGSLIEAGGSLTMNSFEVENQGTLARQPQPIQGIIASQFVLNS
                     TKQLNNEKGGIYIGSSARFTLSDSLNNRNGEILSWGDLAIFGGKSLTMTNTEGKVSAN
                     NGLEITAKALSGDGDVQAGDIRLNLQENFDITKDINANRSMIIQTEGDILNRKKLAAN
                     DRLQLTANQITNAQNARISSADTRLTATSTVYNEGLINSRSDNDNAQTVIKAQEIHNI
                     GTGNIYGDKVALGAERILNQDKDGTSATIAARQSLGLAAKVIENNTLVYEANKKSGSL
                     IYSGGEIAIGRQLNEQDTVIGNAGQLHNRSSIIEAEGRIQLNADKVANVNSHYRSELE
                     TTDRQTVNEHFILPRDKHNRGGSDVYDNGHLPTINVNQLRKGYYRKTWSYWQKYDEAN
                     LPVITDISQLNATTVLAKPYAQSCANDESVDCTLLPAGNYKKDNPVWTWFNLTPPAED
                     APEMTPEIIQAMNEEDLANQHLSEAEQEKLQKEQGQGIAPVVPARPIEPVRGSTETEA
                     QYQKRLQTYQAELKAYEAAEAAYQRYVLLKPLIDWEAKYGANIQALDEAIAKHNKANL
                     SQEYPHFWNLWIKERMVKENITKASLPAQILAGGDLTYQSDEFINDKSWVIAGKALNP
                     IGRSRIANLDDADAVRQDWELGRRQFSFTEYHGGTRRRHSRYDENDGPLARLKEVHKD
                     MNIFVELENTSPTAYTDYVDAKAANAVKPEGNQVERGNLPDAPNPPTMAIERIPSPNA
                     AAFEVRSMTVDTRLPNQGLYRINPQADSHVLIETDPDFTDKKRWLSSDYMFNALRHDH
                     NNVHKRLGDGFYEQRLIREQINRLTGRQFLGDYTDFDSQYKALMDAGITFAQKFNLRL
                     GITLSPEQVASLTSDIVWFETQTVRLPSGETVSVLVPKVYVLARKGDIDGKGSLISAD
                     ALTINSKEIVNQGTIAGRRLAQFNAERLENSGTLSGGVLAAKVSGDLENIGGKIEADK
                     AILLDIAGNFNHTSTTRTTQIDLDGFKRAETNLDRKALLHVKDENGLLQVQAGNITSA
                     GADIINDGQGQTYLSAKNQLNLTALQVGFDEKMGGGNHYRNEALNDVVISRVQGKGDV
                     VVSGKNLYSEGADLDAKARLALLAENDMVLGSATRSRDYEEYHKTKSGGALAKKTKTT
                     YDNISETEHKGTELTGEDILVKAGHDIQGESLLAVSRSGDIDIIGGNNVTLSSATNQL
                     SEQHIRETKRSGFLNGGEIGFTIGSQKTRQENSLEGAIQSTARNTLGSEGGNIRIQAG
                     NKASVSNVDVLISNEKTAVISGKNGVRVESGKDVINSTDNYEFSQSGLSIALSTPVTD
                     AVQSARQSVQKAKATQNEKLKGVYAVKAAEDAVIAAQNAQKVAETLGNLGNALTENHA
                     AAENPAVKISVSLGTQKQQRESRSQSVTHSKSTLNGGNIALISGAGKVALEGVDTRVK
                     DTLLLDGKLGIESKGVADTYQNNTKNKNHSASVGVFIGLDRDSFGIGFEAGVSGGKGK
                     ENIETETWQNNQLQAGKIVTNSANGKLMLDATNVKANHWEGEVQDFEARSRQDISKYK
                     SEYTEGSVHGTLAVGTTGVNGHVAYNGAKLNTAQVENQTAIDIGKSGMDVKVKKNAHF
                     EGAVMTSQAEKENNRFQAGTLTTGDIENHSELKTRSVAISGGTSGVNPMSALSLLGNK
                     NESERSTTKAAIGENIAITLTEDLNAETTLNHLNRDTQNANQKVTKYDISEVKETQEL
                     VKGIGEIAEKAYQIYTHSEREKVTEAKLELGKAQAQKASKEEIGKLEANLDRLQKEFD
                     KNYGTGSKTKRAVEAVTAALQGLAAKDVGQAAVGLASPYLNAEIKKYTEGDTQANLIA
                     HALLGAVEAAATGNNVLAGAAAGAGSEAAADFIVKTLYKGKSTQDLTEAEKQNVALLS
                     QLASGLASGLIGDSTQSAAVGADIGKRAVENNYLSNWQEQKRSQELKSCHGDARCENQ
                     VRLYWGLVDIGQDVSFVSGAVAGVPENLAESVEGLISMFSSPIETIVAMKELIAREDT
                     LSYIANMTKQEYLAKLDKMQVYYEQAGAVGSFNAGKEFGNMMTDVVTALTGAGALVKT
                     GVGTTAKIVTKSGKELAIPKTRSSASLGTCSFHGDMEVKTDKGYRQISSIKVGDKVLA
                     KNERTGITTYQKVQAHYSNPYDYTVYVEVADSKGKYHTIVSNKIHPFFTQVLSGRVPI
                     SSEGHSYNGEIAKAQWVDAQHLQKGYRLLAESGEWQTVTKVKIKQERLKAYNMTVEKD
                     HTYFIRGTNADNEGVWVHNDCWHALPNDAKQVKNIDGYKAYQFTDPKDGKVVTVVQKD
                     LNRFETPNHQAGVDPHFNRLSQQIDAETGRYLSTDNPVDGLYNRAYLRSETLQKIYAN
                     YEKLPNGNYRNKLTRQEIEQPIDIGHMYGWEHRRLSLAAKELNWSQKQFNDYVNARPE
                     NFRLENMSENRSHKNEMPGKHDIQRIKSDMEKFLKEGK"
     gene            complement(9974..11749)
                     /locus_tag="PXD88_000969"
     CDS             complement(9974..11749)
                     /locus_tag="PXD88_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL6280561.1"
                     /translation="MKTPQNLILSTVLLSASFVAEANSSSLVQQARIDATQQQIDAAQ
                     QHRQQQYQQNQAEKFQPKADVRLETQINDTLTLSNHELPCYPIHQITLIDYSPDNSLT
                     TSQFQWAFEKAVKSFHLTLPHCFGGEGLAVLMKQIQNEIIGKGYVTTRVVTAEQDLRG
                     GKLVLTVIPGKIRNTLVVDSGKVPRFTKLHALTGFTFAEGDILNVRDIEQSLENLKRV
                     PTAEANIEILPSSSEKAEVGDSDLKISYSQAFPFRLNLGLDDAGSKSTGKLQTSATLS
                     IDNIFSANDLFYTSFTHSMKQKGDDNGRRASKNLTLYYSVPFGYWQLAFSHTHHRYHQ
                     EVFGAFDKSYLYAGESDTDKLTFSYLLYRDAKRKTSLSGSLWPRQSQNYIDGSEIEVQ
                     KRRMAGWEAGFSHKEYFPTATLELSANFKRGTAARGALSAPEEDYGEGTSRPKIITAS
                     ASLTKPFFWGKQPWQWQSSLNAQWNKTPLVPQDRFSIGGRYTIRGFDGELTLSGERGW
                     NWRNELSWQFNPNHAFYWAVDGGRVSGWATENQLGHHLMGTAIGFRGGVKGFSYDVFA
                     GRPMRKPEGFKTSDTVAGFNIGYNF"
     gene            11904..12989
                     /gene="queA"
                     /locus_tag="PXD88_000970"
     CDS             11904..12989
                     /gene="queA"
                     /locus_tag="PXD88_000970"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL6280562.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(13016..13554)
                     /locus_tag="PXD88_000971"
                     /pseudo
     CDS             complement(13016..13554)
                     /locus_tag="PXD88_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13567..15849)
                     /locus_tag="PXD88_000972"
     CDS             complement(13567..15849)
                     /locus_tag="PXD88_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL6280563.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(15991..17205)
                     /gene="sstT"
                     /locus_tag="PXD88_000973"
     CDS             complement(15991..17205)
                     /gene="sstT"
                     /locus_tag="PXD88_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL6280564.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
     gene            17460..17822
                     /locus_tag="PXD88_000974"
     CDS             17460..17822
                     /locus_tag="PXD88_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL6280565.1"
                     /translation="MKPTNKADFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILF
                     PLGLILGETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAA
                     VFMAMVLLAITWILILFC"
     gene            17859..19502
                     /locus_tag="PXD88_000975"
     CDS             17859..19502
                     /locus_tag="PXD88_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL6280566.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFSFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(19709..20578)
                     /locus_tag="PXD88_000976"
     CDS             complement(19709..20578)
                     /locus_tag="PXD88_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL6280567.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESDTSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(20588..>21031)
                     /locus_tag="PXD88_000977"
     CDS             complement(20588..>21031)
                     /locus_tag="PXD88_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL6280568.1"
                     /translation="RDDYLKSLPPVFARLCKKLKSLDLVNLELGWQELENGIRMNVMS
                     FETTPAEGKKAELHRKFIDIQLLIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAEID
                     DKNNLILKPNMFAIFLPYEPHKPGNSVNGNKTLKKLVVKVPVELI"
BASE COUNT         5663 a         4762 c         4104 g         6502 t
ORIGIN      
        1 tgcataatgt aaaggggtca ttccgtagca atcttgggca tttatttcca ctccattttg
       61 tatataaaat tcaatcacag aaagtggtgc tggtgcataa gaattaagat tacattgatg
      121 taaccaattc catctttcta atggtgtaac ataagagaat gctaattgct ttttatataa
      181 aaaaatatct tctaatactc caatgttacc ttcgccatct gcaatggcaa ctagcattga
      241 gggttcatct ttatattttt catataattc attcatatta tttaccttct tttaagaatt
      301 tttccatatc ggatttgatt cgttgaatat catgttttcc tggcatctca ttcttatggc
      361 tacgattttc agacatattt tctaatctga aattctccgg tctcgcatta acataatcat
      421 taaattgttt ttgactccaa tttaattctt ttgccgctaa tgataatcgg cgatgttccc
      481 agccatacat atgacctata tcaataggct gttcaatttc ttgacgggtt aatttattgc
      541 gataattacc atttggcaat ttttcataat tagcataaat tttctgtaac gtttccgagc
      601 gtaaataagc tcggttatat agcccatcta ccggattatc tgtcgataaa tagcgtcccg
      661 tttcggcatc aatttgctga gacaaacggt taaaatgtgg atctaccccg gcttgatggt
      721 ttggcgtttc aaaacgattg agatcttttt gaactactgt caccactttc ccgtctttcg
      781 ggtctgtgaa ctgataagct ttatagccat caatattttt tacctgtttg gcatcattcg
      841 gtaaagcgtg ccaacaatca ttatgcaccc ataccccttc attatcggca tttgtacctc
      901 taataaagta agtatgatct ttctctaccg tcatattgta ggcttttaat ctttcctgtt
      961 tgatttttac cttagtgaca gtctgccact caccactttc agcaagtaag cgatagcctt
     1021 tttgcaaatg ttgagcatca acccactgag cttttgctat ctctccgttg taagaatgcc
     1081 cctccgaaga aatcggcact ctgcccgata atacttgcgt aaagaacggg tggattttgt
     1141 ttgacacaat ggtgtggtat tttcctttgc tgtctgcgac ttctacatac accgtataat
     1201 cgtatggatt actgtaatga gcttggactt tctgataggt ggttataccg gtgcgttcat
     1261 ttttcgccag caccttatcg cccactttaa tgctggaaat ctgtcgataa cctttatcag
     1321 ttttgacttc catatcaccg tggaatgagc aagtgcctaa actagcgctc gatctggtct
     1381 taggaatcgc aagttcttta cctgatttgg tgactatttt cgccgttgtc cctacacctg
     1441 ttttaacaag agcaccagca ccggttaatg ctgtcaccac atcagtcatc atattgccaa
     1501 actcttttcc ggcattaaaa gaacctacag cccctgcctg ttcatagtaa acctgcattt
     1561 tatcgagttt agctaaatac tcctgtttag tcatattagc aatataggag agcgtatctt
     1621 ctcttgcgat caattctttc atcgccacaa tagtttctat tgggcttgag aacatggaga
     1681 tcaatccttc aacgctctca gcgagattct caggaacacc agcaacggcg cctgatacaa
     1741 aactaacatc ttgcccaata tcaactaatc cccaatataa tcgaacttgg ttttcacagc
     1801 gggcatcacc atggcaggat tttaattctt gtgagcgttt ctgctcctgc cagttcgaga
     1861 ggtagttatt ctccactgcc cttttcccaa tatccgcccc aaccgctgcc gattgtgtac
     1921 tatcccctat caaacctgaa gccagtccgc ttgcaagctg gcttagcaac gccacattct
     1981 gtttctcggc ttcggttaag tcttgcgtgg atttgccctt gtagagggtt ttaactataa
     2041 agtccgctgc cgcttcgctc cctgcgcctg cagcagcccc tgccagtaca ttgttccctg
     2101 tcgcagccgc ttccaccgca cccagtaagg cgtgggcaat caggttggct tgggtatccc
     2161 cttcggtgta ctttttgatt tctgcattta agtatggtga ggctaaaccc actgccgctt
     2221 gtcccacgtc tttcgccgct aaaccttgca aggctgccgt caccgcttcc accgctcgtt
     2281 tggttttact gcccgtgccg tagtttttat caaactcttt ttgcaagcgg tctaaattgg
     2341 cttctaattt accaatctct tccttgctcg ctttttgagc ttgtgctttg cccaattcca
     2401 gcttcgcttc cgtcactttt tcacgctcac tatgcgtgta aatctgataa gccttttctg
     2461 caatctcgcc tatgcctttc accagctctt gtgtttcttt cacctcactg atatcgtatt
     2521 tcgtcacttt ttgattggcg ttttgcgtat ctcggttgag atgattaagc gtagtttccg
     2581 catttaggtc ttcggtgagg gtgatagcga tattttctcc aatcgctgcc tttgttgtgc
     2641 ttcgctcgct ttcgttttta ttgcccagta agctcagtgc cgacatcggg ttcaccccac
     2701 ttgtccctcc gctaatcgcg acacttcggg ttttcaattc actgtggttt tcaatatcgc
     2761 cggtggtcag cgtgccggct tggaagcggt tgttttcttt ctccgcttgg ctagtcatta
     2821 ccgctccctc aaaatgggcg ttctttttca ctttaacgtc cattccactc ttgcctatgt
     2881 cgattgcagt ttggttttcc acctgagcag tgttcaactt cgctccatta tatgccacat
     2941 gaccatttac tcctgttgtc cctaccgcca atgtgccatg tacgctgcct tctgtgtatt
     3001 cgcttttata tttgcttata tcttgtcgac ttcttgcctc aaaatcttgt acctcacctt
     3061 cccaatgatt tgctttgaca ttggttgcat ccagcatgag tttaccattt gcagaatttg
     3121 taacaatttt acccgcttgc agttggttgt tctgccacgt ttcagtttcg atattctcct
     3181 tgcctttacc tccactcact cctgcctcaa aaccaatacc aaaactatct ctatctaaac
     3241 cgataaatac gcccacactc gcactgtgat tcttattctt agtgttgttt tgataagtat
     3301 ccgcaacacc tttggattca atacccagct taccgtcaag cagcagggtg tctttcactc
     3361 gggtatccac cccttccagc gcaactttgc ccgctcccga aatcaaggca atattgccgc
     3421 cgttcagggt gcttttgctg tgggtcacgc tttgactacg gctttctctt tgctgttttt
     3481 gcgtgccgag actgactgaa atcttcaccg ccggattttc tgccgcagca tggttttctg
     3541 tgagtgcatt gccaagattg cccagcgttt ctgccacttt ctgagcattt tgtgctgcaa
     3601 tcacggcatc ctccgccgct tttaccgcat ataccccttt gagtttctcg ttttgtgttg
     3661 ccttcgcttt ttgcaccgat tgccgtgccg attgcaccgc atccgttacc ggtgtactca
     3721 acgcaatgct taagcccgac tggctaaatt cataattatc ggtgctgtta ataacatctt
     3781 tccctgattc aacccgtacc ccgtttttgc ctgaaatcac ggcggttttt tcgttggaaa
     3841 tcagcacatc gacattgctc acgctcgctt tattgccggc ttgaatccga atattgcccc
     3901 cttcactgcc caatgtattg cgtgccgtgc tttggattgc cccctctaag ctgttctctt
     3961 ggcgtgtttt ttggctaccg atagtaaagc cgatttcacc accgttcaag aaaccgctgc
     4021 gttttgtctc acgaatatgc tgttctgaaa gttggtttgt tgccgaactg agcgttacat
     4081 tattaccgcc gataatatca atatcgccac tgcgtgagac ggcaagaaga ctttcacctt
     4141 gaatatcgtg accggctttc actaaaatgt cttcaccggt tagttcagtg cctttgtgtt
     4201 cggtttcaga aatattgtca taagtcgttt ttgttttctt cgctagcgca ccaccacttt
     4261 ttgttttgtg atactcttca taatcgcgag aacgtgttgc gctacccaac accatatcat
     4321 tttcagccag taacgctaaa cgcgctttgg catccaaatc cgctccttca ctgtaaaggt
     4381 ttttccctga aaccaccaca tcgcctttgc cttgcacccg tgaaatgacc acatcattca
     4441 aggcttcatt acgatagtga ttgccaccgc ccattttttc atcaaaacca acctgtaaag
     4501 cggtcaaatt caactgattt tttgcagata agtaggtctg cccctgtccg tcattgatga
     4561 tgtctgcgcc tgctgaggtg atgttgcctg cctgtacttg cagcagtcca ttttcatctt
     4621 taacgtgcag tagggctttg cggtcaaggt tggtttcagc gcgtttgaaa ccgtctaggt
     4681 caatctgtgt ggttcgagtg gtggaggtat ggttaaaatt gcccgcaata tccagcaaaa
     4741 tcgctttatc cgcttcaatc ttgccgccga tattctctag atcaccgctc actttggcag
     4801 caagcacgcc accactgagt gtgccactat tctctaaccg ttcggcatta aactgtgcta
     4861 aacggcggcc tgctatcgtg ccttggttta caatctcttt actgttgatg gtaagcgcat
     4921 cggctgaaat caggctgcct ttgccgtcaa tatcaccttt gcgtgcaagg acatacactt
     4981 tcggcactaa taccgatacc gtttcaccgc ttggcaagcg aaccgtttgg gtttcaaacc
     5041 aaacaatatc gctggtcaag cttgccactt gctccggcga taaggtaatg cctaaccgaa
     5101 gattgaattt ctgcgcaaag gtgatgccgg catccatcag ggctttatat tggctatcaa
     5161 aatccgtata gtcgcccaaa aattgtctgc cggttaagcg gttgatttgc tctcgaatta
     5221 agcgctgttc ataaaaacca tcgcccaaac gtttatgcac attgttatgg tcgtggcgta
     5281 gggcattgaa catataatca ctgcttaacc agcgtttttt atcggtgaaa tccggatcgg
     5341 tttcgatcag aacatggcta tccgcttgag ggttaatgcg ataaagccct tggtttggca
     5401 aacgggtatc gaccgtcatt gagcgaacct caaatgcggc tgcattcggg cttggtatgc
     5461 gttcaatcgc cattgttggc ggattagggg catcgggtag attaccccgt tcaacctgat
     5521 tgccttccgg cttcacggca tttgctgctt tagcgtccac ataatctgta taagcggtcg
     5581 gtgaagtatt ttccagctcg acaaaaatat tcatatcctt atggacttct tttaaacgag
     5641 cgagaggacc atcattttca tcgtagcggg agtggcgacg tcttgtgcct ccgtggtact
     5701 cagtaaaaga gaattggcgc cttcccagtt cccaatcttg gcgaacagca tctgcatcat
     5761 caaggttggc aattctactg cgaccaatcg ggtttaacgc tttgcctgca ataacccaac
     5821 ttttatcgtt gataaattca tcgctttgat aagtgagatc gccacctgcc aagatctgtg
     5881 ccggtaagct ggctttggtg atattctctt ttaccatacg ctctttaatc cacaaattcc
     5941 agaaatgcgg gtattcttgg cttaaattcg ctttattgtg ctttgcaatc gcttcatcta
     6001 atgcttgaat attggcacca tattttgctt cccaatcaat taacggtttt aatagcacat
     6061 aacgctgata agccgcttct gccgcttcat aggctttcag ttccgcttga tatgtttgta
     6121 gtcgtttttg gtattgggct tccgtttccg tagagcctct aacaggttca atcggtcttg
     6181 ccggaaccac cggtgcaatg ccttgccctt gttccttctg taatttttcc tgctctgcct
     6241 cacttaaatg ctgattcgct aaatcttctt cattcattgc ttgaataatt tcaggcgtca
     6301 tttccggtgc atcttcagct ggtggtgtta aattaaacca cgtccatact gggttatctt
     6361 ttttataatt acctgcaggt aatagagtac aatctacact ttcatcattc gcacagcttt
     6421 gagcataggg ttttgccaat acggtcgtgg cattcagctg gctaatatcg gtaattaccg
     6481 gcaagtttgc ttcatcatac ttttgccaat agctccacgt tttgcgatag tagcctttgc
     6541 ggagttgatt cacattaatt gtcggcaaat gcccgttatc atatacatca cttccacctc
     6601 gattatgctt atctcttggc aaaataaaat gttcgttcac agtttggcga tcagtggtct
     6661 ccaattccga acgataatga ctatttacat tcgctacctt atccgcattc aactgaatac
     6721 gcccttcagc ttcaataata ctgctgcggt tatgtagctg ccctgcgttg ccaataacgg
     6781 tatcttgctc atttaattga cgtccaatcg ctatctctcc tccgctatat attaatgaac
     6841 cgcttttctt attcgcttca taaactaggg tattattttc aattacttta gccgctaaac
     6901 cgagagattg acgagcagca atagtggcag aggtcccgtc tttatcttga tttagtatcc
     6961 tctccgcacc taacgccacc ttatcgccat aaatattccc tgtgccgata ttgtggattt
     7021 cttgagcttt aatcacagtt tgagcgttat cgttgtccga gcggctattg attaagcctt
     7081 cgttatagac ggttgaagtt gcagtcaaac gggtatctgc cgagcttatt cgggcatttt
     7141 gtgcattggt tatttggttt gccgtgagct gcaagcggtc atttgcggct aattttttgc
     7201 gattgagaat atcgccctca gtctgaataa tcatcgacct attcgcattg atatctttgg
     7261 taatatcaaa gttctcttgc aaattcaggc gaatatcgcc tgcttgtaca tcaccatcac
     7321 cggataacgc tttggcagtg atctccaaac cattatttgc agaaactttt ccctcggtat
     7381 tcgtcattgt gagtgatttt ccgccgaaaa tagccagatc gccccaactt aaaatttccc
     7441 cattacggtt atttaagctg tcgctgaggg taaatcgtgc tgatgagccg atataaatac
     7501 cgcctttttc attattgagc tgttttgtgc tgttcagtac aaactgcgat gcaataatcc
     7561 cctgtattgg ctgaggttgg cgtgccaagg taccttgatt ttccacctcg aaactgttca
     7621 tcgtaagtga gccacctgct tcaataagtg agccattttc cgagatccga ttatttaaga
     7681 cagtcggtac attgagcgtg atatctgtgg ccgatttcag taccccacct tggttatcca
     7741 aaagcgtgct atttagggtg agatttccca cactttgaat aacaccgtgc cgattatcta
     7801 cttgttggga aaccgtgagc gctaactctt ttactgaact aatttctccc tgctcacggt
     7861 tatctaagga ttgagcgtta atcgcaacac cgctggcgga aattcgcccg ccttgatttt
     7921 gcagttcgct agttatatca agggtttgct ccgtttgaga ggtgatcacc cccgattgat
     7981 tttttaacgt attgaccgta atcgcctgtt tttcgccact caaaatcaga ccttgctgat
     8041 tattcagcaa tggagcacga atagataact cgccttttgc aaccaatttg ccatcgactg
     8101 aatccacagc atcatttaaa tttagcccta aacgcttgcc actacttaat agcccttggt
     8161 tatttgttaa acgattaccg tcaatctcaa aatgtccacc cactgaaaag cgagccgagt
     8221 cagtatggat actctctgct tttaggcgaa aatcctgctc accagtctgc ttccaaaccg
     8281 agccacgagc atttaaattc gcttgttggg cctcaatcac ctctgcggtt agctggcttc
     8341 cttcagtgga aagccatttt ggggtggtga gcttgatctg atttgcacta aactgcgcac
     8401 tattcgcctg aatatcgccc gattttgcac tgtattcaac ggtatgggca ttattttggc
     8461 tctgattggc atcaatctca gctgccgcca cgttaatttt ccccgaagcg atattttttc
     8521 cctgcacagt ggttttttct ggggcagtga gttgaatagt tttccctgcc acagattgag
     8581 cttccagctt ccgtacttca ccttgtgcag tgtcggttac gtccacccca gcggcaatca
     8641 gtgagttttt gtcggcgtga atttggcggg cggtgtaggt gatattgcct tttgcgaccg
     8701 tttcgccact ttgctggatt ttagtttcgg cttttttctg aatattgcca cccctcgcca
     8761 cgatggaacc gctattttga atatcggctt tcgagttaag ctgaatattg ccctgtttat
     8821 tttcaatttt gccttggttg tcaatcccgt gttgggcatt gagttgcact tgtctttgag
     8881 cgttgaacgt gccgctgttt acaatccgcc cttgactgtc aatggtgagc gtatcggcac
     8941 ttgcaccgat atgcccagcg ttacgcacgc ccacgccctg ttccgtacca atcaggtgga
     9001 ttttgccggc atacattccg cccagctcac ccacatcaat cgcaactgtg ggcttttctt
     9061 cccctgcaag cggttgattt gtatgaataa tttgcaaatt gttgtccgaa tttgaccgct
     9121 tgacggtgtt tttgccggta atgactttag tctctttttt cgaccagaca ccggcgttga
     9181 ttttcgcttc tcgggcgagg atatcggtgt aatccactcg gctgttgtcc agccctttgc
     9241 cagcaaccgt taccttgcct ttttccacta caaaaccttc taaattgcct tgatttatct
     9301 gtggttttcc ggtggtcagc gtggctcggt cggcgttgat aataccgcag ccgtcacagt
     9361 gcaagccgct cgggttggcg ataatcactt ccgctttttt gccagccact tccacataac
     9421 ctttcattac cgaaggctta ctggaattga cttcatttaa aatcaccttc gcttcgccac
     9481 gggcaagata cgggttgcct tgcaccatac cggcttgttg ggtggcggtg ttggtgcggc
     9541 tgttgttgag aattgccccc ttctccgcta cgtcaaattg gctgtattta ttgtgggaaa
     9601 gccctttatc gttcggggtt tgaatattga tttgtggcag cccgttggcg gtttgcaaaa
     9661 taatcggttg ctgatttttc ggggcagtgc tatcggcttg aataatcaaa gtttccgcca
     9721 tagcgttgtc tgataaggta acgaatccca acgcacagaa caagctgaac gcaagcggtc
     9781 gaattttgca aattttttgt aaaattgcac cgcttgtcat actttcactt tctgatttac
     9841 ctgctaattt tgctaattca gataccacca caatacgttg taaggtcttg ctgaaaatag
     9901 tgcgaaaaca atgcttattc ataataattc cttaatagca caatatactt aatacaatat
     9961 gcccaatcat tcattaaaaa ttgtaaccaa tattaaaacc ggcaacggtg tctgaggttt
    10021 taaacccttc cggttttcgc atcggtctac cggcaaacac gtcataacta aatcctttaa
    10081 ctccaccccg aaacccaatg gctgttccca ttaaatgatg tccgagctga ttttccgttg
    10141 cccaaccgga cactcgacca ccatctaccg cccaataaaa agcgtggttc ggattaaatt
    10201 gccagctcaa ctcattacgc cagttccagc cccgctcacc ggaaagagtc agttcaccgt
    10261 caaatccacg tatggtgtaa cgcccgccaa tcgaaaaacg gtcttgcgga accagagggg
    10321 ttttattcca ttgggcattt aggctacttt gccactgcca tggctgcttg ccccaaaaaa
    10381 acggtttcgt caggcttgca cttgccgtga tgattttagg gcgagaagtc ccttcgccat
    10441 aatcttcctc gggagcagat aatgcccctc gtgctgccgt acctcgtttg aaattagccg
    10501 aaagctcaag cgtagcggtc gggaaatatt ctttatgcga aaaacccgct tcccaacctg
    10561 ccattcggcg tttttgtact tcaatttctg agccgtcaat atagttttgc gactggcgtg
    10621 gccaaagtga accggacaag ctcgttttac gtttggcatc acgataaagc aaataagaaa
    10681 aggttaattt atcggtatca ctttcaccgg cgtagagata gctcttgtca aaggcaccaa
    10741 atacttcttg atgataacga tgatgagtgt gtgaaaatgc taactgccaa tagccaaacg
    10801 gcacggaata gtaaagcgtg agatttttac tggcacgtct gccgttatca tcaccttttt
    10861 gtttcatcga atgggtaaaa gaggtataga acaggtcatt tgccgaaaaa atattatcta
    10921 tagacagagt ggcggaggtt tgtaatttgc ctgtggattt cgagccggca tcgtccagcc
    10981 caagatttaa gcgaaatgga aacgcttgcg aatagctgat ttttaaatca ctgtctccca
    11041 cctccgcttt ttcgcttgag ctgggtaaaa tctcaatatt tgcctccgcc gtcggcaccc
    11101 gttttagatt ttccagagac tgctcaatat ctcgcacatt cagaatatcg ccttcggcaa
    11161 aagtaaaacc ggttaaggcg tgcagcttgg taaaacgcgg tactttgccg ctatctacca
    11221 ctaaagtatt gcgtattttg cccggaatca cggttaaaac taattttccg ccacgtaaat
    11281 cttgctccgc agtaaccact cgtgtagtga cataaccttt gccaataatt tcattttgga
    11341 tttgcttcat caacacagct aacccttcac caccaaagca gtgaggtaat gtcaaatgaa
    11401 atgattttac tgctttttca aacgcccatt ggaattggct ggtagtcaga gaattgtcag
    11461 gagaatagtc aatgagagtg atttgatgaa tggggtaaca aggcaattcg tgattggaaa
    11521 gagtaagtgt atcattgatt tgtgtctcga gccgtacatc agctttcggc tggaattttt
    11581 ctgcttgatt ttgttggtat tgctgttggc gatgttgctg ggcagcatca atttgttgtt
    11641 gagttgcatc aatgcgtgct tgttgtacaa ggcttgaaga atttgcttca gcaacaaaag
    11701 aagcacttaa caataccgtg cttaaaatca gattttgtgg ggttttcata agatcaaata
    11761 agtaagacat tcaacgtttt tagtctataa aaatttatgt tgttttgcaa actccgtttt
    11821 atggagcttt atacatatct gacgactttg gttttttatg ctattatctc cgccattttt
    11881 atactataga gaatagaata accgtgttag tttcagattt tcatttcaac ttacccgatg
    11941 agctgattgc tcgctacccg actgccgaac gctctgccag ccgtttatta cacttaaatg
    12001 gcgaaacagg cgaatttgcc gatcaacaat ttgtggattt atacgatcat atcaacgaag
    12061 gcgatctatt gatcttcaat aacactcgag tgatcccggc tcgcctttac ggtcgaaaac
    12121 ctagtggcgg caaagtagag gcattagtgg aacgggtgct agatgaacac cgctgcttgg
    12181 ctcacgttaa agcctcaaaa gcaccgaaag aaggggctga attgatcttt ggggaagata
    12241 agctaggtga aggcaaaggc tttacggcga caatggtagc tcgccacgat actctgtttg
    12301 aattggtgtt taacgaagag caaccgttat tcgaattgct acagcaagct ggtcatatgc
    12361 ctcttccacc ttatatcgac cgccccgatg aagatgctga ccaagagcgt tatcaaaccg
    12421 tttatagcaa agtgttaggt gcagttgccg cccctaccgc cggtttgcat tttgacaatg
    12481 caatgcttga aaaactaaaa gcaaaagggg tggatactgc cttcgtaaca ttgcacgttg
    12541 gtgccggcac tttccagccg gtacgggtag aaaccattga agatcataaa atgcacgccg
    12601 aatatgccga agtgagccaa gaagtagtcg ataaaattct cgcaacgaaa gccaaaggaa
    12661 aaagagtgat tgcaattggt acgacatcag tacgttcggt tgaaagtgcc gcccaagcgg
    12721 ctgaaaaaga tgggaaattg attgctccgt tcttttctga caccgctatt ttcctttacc
    12781 cgggaaaaac ctttaaagtc attgatgcgt tagtcaccaa tttccattta ccggaatcca
    12841 cgctaattat gttagtctca gcatttgccg gctatagaaa tacgatgaat gcctacgccc
    12901 acgcagtaga aactaaatac cgttttttca gctatggcga tgcgatgttt atcaataaaa
    12961 acccaaatgc gttgagtgat gttccttaat ttatgagggt tataagggaa taacattatg
    13021 aacaaaaaca atcttccaac cattttaagg gattgttttc aatatattca ataatttgga
    13081 agtacgatgt ttcattacga ataatgtgtt cataataatt cctttgccaa atttcagaaa
    13141 tatcggtatt ttgacgaacc catttagtta cgccaatttt aaaaccacgc acaatagagc
    13201 cgattgttcg tgatgttccc cgtaagggcg aaacattttt cgcccttata catggggcaa
    13261 atgatgattt gcccctacag tttcgacgat ttcaataatg ccatgtaaat gattaggcat
    13321 aatcacaaag ctatgcaagc ttacatttgg aaaatgatcg ggtatatctt cccaacattg
    13381 acgtacaata ttccctatct tattaagcct catttcatca tcaacaatct caccgagaaa
    13441 atggtgttta tttttacaac aaatagtaat gaaatagaat ccttgtgatc ggtaatcata
    13501 atgctttaga cgaattgaac gcctcctatg aatctccggc tgatatttct gcatttttct
    13561 tattccttaa taaaactgct tataccaagg ggaaaatgcc ccccttgcct gctcaatttc
    13621 aatagaactt gggtaaaatt ttactcttat cattcccgtt tctacggtat ttaatacatt
    13681 aatatgtctt ctgtttaatc tctcaataat ctgtttattc ggtaatttcc atgggttcca
    13741 tcttccagca gaaatcactg caaatgctgg ctgggtaatc gataataaag tttcgccagt
    13801 gctgcttttg ctaccgtgat gtccaacctg tagaaaatca attttgccga gctgatgggc
    13861 aaattggcgt tcttgttcca cgccagaatc ccctgtcagt aatatcttca agcggtcgtt
    13921 tttggctaaa ataacgcaag agtcttggtt tttagctcgt tctgcaatgt gtgacgggta
    13981 aattgccaat aattgccatt cgccaaattg ccacgatgtt ccggcaatac aaggctcggg
    14041 atttatattg tgatacgtca ccttgcttga actaattaac cttgcttttg ggtatgcttg
    14101 caataactcc actaccccac ctgaatgatc attatcatcg tgacttagaa aaatcgcctc
    14161 tacctcaatg ccatttcgct ttaaatacgg caagatttcc atttttgcca ttgaattgcg
    14221 actaccatca tttgcttgcc aactggagcc ggtatcgtaa attaccgctt tattttgttg
    14281 ataaatgaac gccattgcca gcccttgccc aacatcaaac ataatccatt ctgtttgggt
    14341 ttgattaaag agcttaggga gataaaaact cagattgaac aatagggata ccgctactgc
    14401 acttaaccac tttttataag atagccgata taatttgcaa tacagcaata ctaaaaccaa
    14461 taaattcagt gaaagtaact gccactgttg ccaatggctt aatgcaaacc acgcattaga
    14521 aaatggatct aacagccata ggctaaattg agcaagatag tccgccaaca gccacgttga
    14581 aaacagattg tcggtcaaga gcgtaaataa aataagcggt acaagcaaaa agctatacaa
    14641 cggcacaata atcaggttgg caagcagtgc aaaagcagag atgccctcaa aaaagtagag
    14701 ttgaaccggt gagaaaatca gccaaatgcc gatttgtaag tgcaaaagcg ataaccacaa
    14761 gcggttaaat tttgtgattt ttttacgata ttcatcgttt aaaaatcggc taagaggaaa
    14821 atattgatac cataaaatta aacttgctac cgctaaaatt gagagccaaa aactatcaga
    14881 aagcaggctc aatgggtcaa ttaaaatcag taacgccact attctccccc aatattgcca
    14941 aggggtatag tgtcgccgca gaacttggca aagcaagaca aacgcaatcg ccagcaacgc
    15001 tctggcggtc ggcacggcaa aaccggctaa atagctgtaa ccaaatgcgg tgatgaagct
    15061 aactattctt gcaaaataaa gtgaaaatcc gaccgcttgt aatgcggtaa gctcgctttt
    15121 caagcaaagc cattgcacgc ctttggcaaa gtaaacacca aacaacattg ccagcccgat
    15181 atgcaagcct gaaatggcaa ttagatgggc agtagcggtt tgttggaatt gcccccagtg
    15241 ttctgttttc agccacgccc tttcaccaaa agccagagcc aataaaaagc cttgcgtagg
    15301 caaagcgtcc gtttcagctt tcactttatt cagccaattt gttcgcaagc tataatcagt
    15361 tttggctaat gtttccacct tgcgaaccgt tgctgtcata ttgatatgat tggcaaaata
    15421 ccaacgctgt cggtcaaaat taccgatatt gctacgagct gaaataggac gaagagccag
    15481 ttcggcttga tagaattgat taagtaacaa cggctgtttc gattgccagt tcaagtagat
    15541 cttctcgcct gtatttagtg tcgcaatcgc tgtttgataa tcggtttgtt ttaagatttt
    15601 actgatttca aattgaacag gcgttttact agcagtcgtt ttttccgcat tttttgcaac
    15661 ttgaatgatc tgaatatagc caatacaaac caataagccg agtacagccg ttaattttga
    15721 gcgtagataa acactcaata tcagcactaa ggttcctatt actataccca caaatagaaa
    15781 cgctttaggc aaccataaaa taggcagatg aaatagaatc agggcaatac aaaaacggtc
    15841 taaagtcata attcggctta ctttttaaag ctgagtatgc cgtttgtgct taatattttc
    15901 agaataaatt ttcagatttt cgacacagtt cgcaaaaata cttgaaaaaa taaaggcaga
    15961 ctttttagcc tgccttataa agaagagata ttatgctgat ttttgatctt cagcgtaact
    16021 tactgctgca gtgaataata cgtctgttga tgaatttaat gcggtttcaa ccgagtcttg
    16081 aatcacacca atcacaaaac ccaccccaat tacttgagca gcaatatcgt ttggaatatt
    16141 aaataaacta caggctaatg gaatcaataa taatgaaccg cctgccacac ctgatgcgcc
    16201 acaagcacag attgatgcaa ctacgcttaa tagtagtgct gttgcgaaat caggttgaat
    16261 accttgtgta taagctgccg ctagggttaa tacggttaca gtaatcgctg cacctgccat
    16321 attaatactt gcacctaatg gaatagctac agaagcgatc tcatcacgaa cgcccaaacg
    16381 cttggctaaa ttcatattca ccggaatgtt ggctgctgaa ctgcgggtaa agaatgccgt
    16441 tacaccactc tctcgtaaac aggtaaatgt aagtgggtat gggttgcggc gaattttcca
    16501 atacactaat aatggattta gtactaatgc cacaaataac attgcgccaa ctaagactac
    16561 taataaacgt gcgtaatctt caaacgcatc aataccattg atggcaacag tttcagctac
    16621 taaaccaaat accccaatag gcgcaaatgc aatcacaact ttcacaacaa acgaaactgc
    16681 gttagctaaa tcatttaaga atgcttttga acttgccgaa ccatggcgga atgcaatccc
    16741 taaaccgata gaccacgcaa gaataccgat aaagtttgca ttacttaatg cgactaatgg
    16801 attatcaact aagttaaaaa taacggtttt tagaatttca ccaatgcctt gtggcggggt
    16861 taaaccgtct gggcttgcag taagctctaa tgtagttggg aacataaagc ttaaaacaac
    16921 agccgttaat gccgcaaaaa atgtacctaa tacataaagc accagaatcg gctttaattt
    16981 gctatctgaa ccaacttctt tatttgcaat cgcagccaaa actaatacaa atactaaaat
    17041 aggcgcaatg gcacgtagtg atttcacaaa aaattgacct aatacaccaa cgctggtagc
    17101 ccattcttta ttaataaatg ccagcaatac ccctagcact aaaccaatgg cgatacgtaa
    17161 tactaaatta ccgccaagaa tttttgatga taatgattga ctcataaccc ttcacttctg
    17221 taagacaaca aaaaataagg ataaataaaa tttatccgcc tgaaaaaata ggtttataag
    17281 attagcggaa aataaacaaa tatggaataa acaagcggtt tatttttcag atttttttac
    17341 aaaaaagtga agttttttac attccatggc tatcatatta ttttttcctt aggttctttg
    17401 aacatcacca ttctttcagt acaatagttc tctaaactct tttatttatt ttatttacta
    17461 tgaaaccaac caataaagca gattttcaac gtgtgatcaa tgcagctggc tactctatga
    17521 aggggttaaa agccgcttat attaatgaag ccgcctttcg ccaagaaatt tggtgcgcta
    17581 ctattttatt ccctctaggg cttattctag gcgaaaccaa tattgaaaaa gcattattag
    17641 taggcacagt tttacttgtt ttagttacag aactactcaa tagtgcggtt gaatctgttg
    17701 ttgaccgcat tggggctgat ttccacgagc tttctggtag agctaaagat attggctctg
    17761 cagctgtatt tatggcgatg gttttactcg ctataacttg gatattaatt ttgttttgtt
    17821 aactctattt ttcaaccaac actcttactg aggtatttat gcgcttaaaa aaaacattac
    17881 tttcggtagc actacttagt gcaacatcag caatggccta cgagacaggt aaaacatatc
    17941 gttttacggt tttacatact aacgatatac acggtcactt ttggcaaagt gataaaggcg
    18001 aatacggtct cgctgctcaa aaaacattgg ttgataatat tcgcaaagag gtcgcagaaa
    18061 aaggtggttc ggtattaatg ctgaatgcag gtgatgcgaa tacaggcgtg ccggagtcag
    18121 atatgcaaaa tgcacgtcct gatattgaag gaatgaatgc gattggttac gatgcaatgg
    18181 ttctaggtaa tcacgaattt gattacccac tgcaaattct ctctatgcaa gaaaaatggg
    18241 ctaaattctc ctttatttcg gccaatgtca ttaataaaaa aacggataaa cccattgtaa
    18301 aaccttacgt gatgttagaa cgaggcggac taaaaattgc tgttatcgga ttaacaaccg
    18361 aagataccgc aaaattaggt aatccagatg taacggaaaa tgcctttttc aaaaacccta
    18421 ttgaaacagc aaaaaacaca ttagctgaaa ttaatcaaaa agaaaaaccc gacgtacgta
    18481 tcgctttaac ccatatgggt tactattttg acggtaaaca tggtactaat gcaccaggtg
    18541 atgtaacaat ggcccgtacc ttagaaaaag gagcgttcga tttaatcatt ggcggtcata
    18601 cccacgatac tgtttgtatt gatgaaaaag gtcaattcaa agccaaatat acgccgggtg
    18661 aggaatgtaa accagacttc caaaacggta cttggattgt gcaagccggc gaatggggca
    18721 aatttgttgg acgggctgat tttgagttta aagatggaaa agctaccttg gtaaaatatg
    18781 aattaattcc ggtcaactta aaaaaaacca ttaaaaaaga agacggtact aaagaatacc
    18841 gactttacca gcctgaaatc aaagccgatg aagcaaccta taccttattg aaaaaatatc
    18901 aagatgaggg cgataaaaag cttaatattg aagttggtcg tgtgaaaggg ttattagacg
    18961 gcaaacgtga gcatattcgc ttccaacaaa ccaatctcgg tcgtttaatt gcacaatcgc
    19021 aaatggaaag ggtaaaagcc gatatcggga ttatgaactc cggcggtatt cgtacctccc
    19081 ttgaagaagg tgtaataact tataaacata ttctgactgt tcaacctttc ggtaatatga
    19141 ttgcaacggt ggatttaaaa ggacaagaat tgttagatac cctcaccact attgctctga
    19201 aagaagttga tactggcgct tatcctcaat ttgccggcat ttcaatggta gtcgaccgta
    19261 cagcaaaaac tatttctgat gttaaaatcg gtggcaaacc ttttgataaa gagaaaactt
    19321 ataaagtttc tctgcctgac tatgttgcgg ctggtggcga tggctaccca ttactgaaaa
    19381 aacaccctag ctatgtcaat acaggcttta ttgatgccga aatgctgaaa aaattcttcg
    19441 aagaaaataa aattattgag gcagataaat acgatccaaa aaaccagatc attttcaaat
    19501 agagctatag aaaatgaaac tcactctggc agtctctgct caaaagagct gtggctgcct
    19561 gtagattgtt ttcttacttt caagtgttat aggaaatcga taaaaaatcc ctaccaaatt
    19621 aattcatcac catatgatga aaattaaaaa acctctggca atactttgcc aaaagtcttt
    19681 gacttttata gggtaatatc actgcttatt agcctttaac acgttgttcc aaaatcacat
    19741 tcagtgtttt ttgtttctgt ttcaacgcat tttcgggttc ggctttaact agtaaggtat
    19801 aaattaaatc aagaacgaaa agttgtgaca ttttagtacc gatagaatct ccttgcatat
    19861 gcccctgtcg attaccatta attaacacat aattagcctc ttccgtgacg ggggaacgta
    19921 aattgtgtgt aatcgcaacc gttgtcgctt tatttgcacg agaaaaacgt agtgatttca
    19981 caatttcttc agaatagcct gaatgactaa tccctataac taaatccccc tctttcacca
    20041 atgccgcctg catatacata aaatgattat ttgtgactgc atcggtttgt agcccaatac
    20101 gcattaattt atgttttgca tcttctgcgg ttaacccaga agaacccact ccaaataaaa
    20161 agatccgttt tgccttacgt aattcttcaa caactttttc caacacgtta aagtcaagca
    20221 aattaatagt ctcttcaata acgttatcta aactcacttt gagcttctca gcaatatctt
    20281 tcgatgtatc cgattctgaa acatccgtat caagcaatac tctattatct tgattttgcg
    20341 tagccaactc tattgcaagc tctaatttaa agtcggtata acctttaaaa cctaatgtac
    20401 gacaaaaacg aataaaagtt gcttcaccaa catctaattg tttggccact tcagataatg
    20461 aacattggct aagtaattcc ggctgagata aaatagcagc agctattttc ttctctgttt
    20521 tggttaaact attttgtagc gagctaattg tattaagaat ttttccccga ctagacatag
    20581 tagcctccta aatcaattca acaggtactt tcaccaccag ttttttcaat gttttgttgc
    20641 cattcaccga atttccaggc ttatgtggtt cataagggag gaaaatagcg aacatatttg
    20701 gcttgaggat caagttattt ttatcatcaa tctcagctgt taattggtag tcatcttcat
    20761 ctcgatattc atcatactta gataaatctg gctggcttaa cccgtattca atcatttctt
    20821 cgccgtctat caataattga atatcgataa attttcggtg taactctgct tttttcccct
    20881 cagctggcgt agtttcaaat gacattacat tcatgcgaat accattttct aattcttgcc
    20941 agcctaattc caaattaact aaatctaaac tttttaattt tttacaaagg cgagcgaata
    21001 ctggtggaag agattttaaa taatcatctc t
//
LOCUS       DANLXK010000032        20931 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.032, whole genome shotgun sequence.
ACCESSION   DANLXK010000032 DANLXK010000000
VERSION     DANLXK010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20931
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..463)
                     /locus_tag="PXD88_000978"
     CDS             complement(<1..463)
                     /locus_tag="PXD88_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280569.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKL
                     GSKELRKVLEWINENNLCIHFALYDWVYFYDVDIIDSALIESDVCSVWKYLS"
     gene            complement(490..1164)
                     /gene="cas4"
                     /locus_tag="PXD88_000979"
     CDS             complement(490..1164)
                     /gene="cas4"
                     /locus_tag="PXD88_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL6280570.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(1164..2027)
                     /gene="cas7c"
                     /locus_tag="PXD88_000980"
     CDS             complement(1164..2027)
                     /gene="cas7c"
                     /locus_tag="PXD88_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL6280571.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(2037..3818)
                     /gene="cas8c"
                     /locus_tag="PXD88_000981"
     CDS             complement(2037..3818)
                     /gene="cas8c"
                     /locus_tag="PXD88_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL6280572.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3840..4517)
                     /gene="cas5c"
                     /locus_tag="PXD88_000982"
     CDS             complement(3840..4517)
                     /gene="cas5c"
                     /locus_tag="PXD88_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL6280573.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4759..6510)
                     /locus_tag="PXD88_000983"
                     /pseudo
     CDS             complement(4759..6510)
                     /locus_tag="PXD88_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6500..6961)
                     /locus_tag="PXD88_000984"
     CDS             complement(6500..6961)
                     /locus_tag="PXD88_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280574.1"
                     /translation="MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQ
                     PFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARN
                     VVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
     gene            complement(7120..8256)
                     /locus_tag="PXD88_000985"
     CDS             complement(7120..8256)
                     /locus_tag="PXD88_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6280575.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA"
     gene            8303..8719
                     /gene="tnpA"
                     /locus_tag="PXD88_000986"
     CDS             8303..8719
                     /gene="tnpA"
                     /locus_tag="PXD88_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL6280576.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
     gene            complement(8781..9374)
                     /locus_tag="PXD88_000987"
     CDS             complement(8781..9374)
                     /locus_tag="PXD88_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280577.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKLVYLIVP"
     gene            complement(9505..11793)
                     /locus_tag="PXD88_000988"
     CDS             complement(9505..11793)
                     /locus_tag="PXD88_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL6280578.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
     gene            12057..13820
                     /locus_tag="PXD88_000989"
     CDS             12057..13820
                     /locus_tag="PXD88_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL6280579.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
     gene            13917..14879
                     /gene="cmoB"
                     /locus_tag="PXD88_000990"
     CDS             13917..14879
                     /gene="cmoB"
                     /locus_tag="PXD88_000990"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL6280580.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(14932..17364)
                     /gene="gyrB"
                     /locus_tag="PXD88_000991"
     CDS             complement(14932..17364)
                     /gene="gyrB"
                     /locus_tag="PXD88_000991"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL6280581.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(17496..20132)
                     /locus_tag="PXD88_000992"
     CDS             complement(17496..20132)
                     /locus_tag="PXD88_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL6280582.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            complement(20142..>20931)
                     /locus_tag="PXD88_000993"
     CDS             complement(20142..>20931)
                     /locus_tag="PXD88_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6280583.1"
                     /translation="TLDVKTTSAGTLLKELFETKLPVFSAPKNPNFLRHLITLFEDKN
                     FISLDFFAGSSSFPHAILESNRIDKGNRKFIAVQYPEEIDIKSKNGKVAKQFCQRKNL
                     PLYITEISKERIRRAGKQILQNNPENRPLDVGFKVFKLTESHFKQWQSPTSENLADQL
                     EMFIDPVSEKADTQAVLYELLLRLGLKLTAKVRLENKVFWVEENGLIFALLLNAADEE
                     IIQTVIAQQPKKVIALDRLFNGNDARKKNTELQMQDAGITFFVI"
BASE COUNT         5815 a         4570 c         3970 g         6576 t
ORIGIN      
        1 ctgaaagata tttccaaaca ctacatacat cactttctat taaagcacta tctataatat
       61 ctacatcgta gaaatacacc caatcataca aagcaaaatg tatacatagg ttattttcat
      121 taatccattc caagactttt cttaattctt ttgaaccaag tttattaaaa aaattctttc
      181 ctattttact aaactttaat tccttattct gcaaatgaag gagttttctc caatcaggag
      241 caattaaatt agcattacta atttgagcaa tccctcctaa tacaaataca ggaggaaccc
      301 caatgtggga agaaatggtt ctattaaaat tactaccttt tttatcatta ggcgtatgtt
      361 ttaacttccc aatatttcca ccactctcat caagaaatat tttgtagtta tgctgtgcta
      421 tatttaatcc gtgaaatgat ctttctaagt ttgaagttat cacaacaagt ccctccccaa
      481 agtaggtaat tataataaag atccaaacac tcccaccaca taccccttcg atctatccct
      541 ttccaacaac tttggttggc agaggtcgat aagcgagcag gctttgcagc gtttgctgta
      601 ttctggagga ggtgtggttc cgctatctaa gagcgaccgc acttcggcaa tggtggcgag
      661 ggttttggtg cgtagttcgg tggaaaaaat gatcggcaaa cggtggcgag tttgcatata
      721 ccacaacgcc ccttcgttaa tcgtctgctc tgtcatttct tccaaacata aggcttgggc
      781 acagagttgg atttcatcaa tcggatcaag tttgggcttg ccacgtttgt attccactgg
      841 ttttagctcg cctgttttta ggtctcgctc aaccaaatcc aaaatgccgc ttatgcctaa
      901 tttttcggct gcaacgtgaa ccgttcgctc aaagcgaatc cctttgcgaa cttctggctc
      961 accactatct acccgctcgt gcaacgcttg accttgtgcg gtgagatagt tttctgccca
     1021 cacctgttcg ttgtggatca gcgcacattg acgtgggcag aaggcatagt gttgcaaagc
     1081 ggaaagcgaa attgaccgct tgtcatcgcc aaattttggc tgaacaagcg gtaaaatttc
     1141 cgcagaattt tgcaaatcgc ccattacagt aattcttcaa cggttacacc cgttaagcct
     1201 tcggtttgta cgctgataca gtaatcgtca tagtctttcg ctggcgtgtc tttttcaccg
     1261 ttgattcgct caacttttac cgagtcaaac agtttgtgtg caggttggtt gcctaattcg
     1321 ctgtcgtgtt taaatacgat cagtttacga gctgccattt cgcctcgtgc ggcagaacgg
     1381 tcgtgttcaa acataagttg caaggcttgc caaagttttt gtacatcttc atcagaaaag
     1441 cccgtttttt cagcgagttt agctgaaata aagccgtgaa cacgataaag tgcgtaaggc
     1501 acgatatatt tacgccccat agtccgttct ttttcaagat ctttttcgtt ggtcactgcc
     1561 attcgtgtga tcgatacttc tagcggaata atcggatcga tagattgagc gaacgccaat
     1621 tgcactgggc ctcgcacctg tccgctgttt acttcggtag tcattaccgc cccaaaggtg
     1681 cgaatatcga aaaagttttt gcacatccaa gcggtaattt ctcgggcttt agcttcctct
     1741 tttggtagtt ttttcgcttc cgattcaatc cctaatgctt cataagcacg tttgttttgt
     1801 aaattcagaa cacttttttc tttaacataa atttcgtaac ccgcctcgtt ttcatagctc
     1861 atttcaataa aattgcggat tttgcgtttt aggcaaacat cggtgactaa acctttactg
     1921 gtttcaggat caaggcgtgg catatttcct gcatctggat caccatttgg gttaccgttg
     1981 gttacatcaa agaaaaaaac aaattcatag cggttttgaa tagacatagt gtttccttag
     2041 ttttcaatag actcagtggt ttctttttta gcgaaatagc tttgtttttg gtggtaataa
     2101 ccaatcgcaa aacgcccttg ttcatcgata cttaaatggc gagggaaatt ttccggcaag
     2161 ctggcaataa tctcacctaa atccttatcc agattaaccg ccattccgcc cttatctttt
     2221 ctcaagcgag ataaatggtg ttttgcaccg cttaataagc gagggaatac cgaaaacggc
     2281 acggcagaag ccgaaccata atagcggtcg gcaatgccgg catttaattc gcctaatgct
     2341 tggctttgga ttctttctaa tactgcaaat aacctgccga gcaagtaagc ttggttatcg
     2401 ctttctttat ttaagctcat aggaactcct tctttaataa aaccttttct aaattttcgt
     2461 tgtaagactg ctttcatcaa cgctactcgc aaaccgttaa tatcgccgtc tgctcggatt
     2521 cgagtcacta actgtgaaag taaactcatc ggatataaat gaccgctaat aactgcgcga
     2581 gccatttcac ccgccaagac tggagaaata ttctcacttt tacctaatga agcggtttgt
     2641 aataatagtc gccaaatgga aggtggtgtt ttccatgggc aaggctcaag agcgagatct
     2701 tgccaatgct cgctgaggtt ttttgccagt tgcccaaagg tggtatccag ccaaaaacgt
     2761 accgaaatgc gagctgcatt tggagcaagc cccaacacat aaaaacgggt gttttcagat
     2821 aattctgggg aaatttctgc aagcggtcgt cctttgctga ttttttgcaa ttcttcaaag
     2881 attttttggt tttcttgctc atcatctgga ggcgtcatta aagcagcaaa aaagccttca
     2941 gcagcttcag cttgggtggt attgtctgct tctgcccaaa agacagtgct ggcatcacca
     3001 atagttaaac gatgtttctc ggtgcgtaac aaataattta aagcagtagt gtaggcaaag
     3061 gcggcttgtt cagaaacagg ggcattacta ccttgttcct tgccaaatga agtgaaggat
     3121 tctttattga aagagatgat tgaaccaccg gaactttgcc caccaaatac ccctttaata
     3181 ggaggatgag ttcgttgaat tggcgataat ttgcctgaaa ttaagcataa acctttttca
     3241 gcattatcac tttgatttat caacaaactt gtccaaaggg tttgtgcagc ttctcgctga
     3301 tgaatataac cgcttgtgcc gactaattta aacacgacat tcgcatcaag aatttctctt
     3361 gggcagattg attcggcaaa atgtgtgggt tgccattgtt gcaggaaatt tcttatcgcc
     3421 attaaacctt catcattgga atctgcaagc aaatccaaat ggtactgttt aaatgcctca
     3481 aaggttttct cggcgaaatt gatgggttga tctttggcgg tggctttatc aggattactt
     3541 tcaatgccta gcacataagc ggttttatcc cacagaaaat tgggcttaat gccagacgtg
     3601 cgtttttcag ggcgaggtac gctcatcaat ttcggttttg gtttcttatc ttctgttaaa
     3661 tttgagatca cattgaccaa atttcccttt gaatctaatt ctagtaccca accgattttt
     3721 tcttcactga aaccataaga aggcacttta gcttcgcctg ttaagcgatc ttcttgtgct
     3781 gcaaggcggt aataatagcg agttaaggcg gtaataatag cgagttaagg cggagagaat
     3841 catgatttga cctcctctgc ataaaatggt ggcacatcaa tcacgccatt tttcatttcc
     3901 gcacggaaga aacgaggttg attaccgtgc tcaaaatcaa tgtcgtgcaa catccagcct
     3961 aaatcccgat ctcgctcatt ttctgccaaa aaacactcag gtaacggttc atcgtcatca
     4021 atcaaggcaa aatttgcggc aaattcacgc acgcccatac aaggctgctg gaaacattgc
     4081 ccctttttcg cacggcgttt aaacatttca atatgcttgg tgacggtttc cgcctcgcct
     4141 gccattttgg tcagcactgc gtgagcttcg atcacataac cgacattttt cagcacagta
     4201 gcagcacgtt gttggcggtc gtcttcaatc acagtatata aatccgccac tgttttacgc
     4261 ttcattgcac cactgatttt actggcagaa attttactgc ctaactcatt acggcgaaca
     4321 gactcaaatt gaatcggttg taatacataa attttatcaa tcacccagcg aattgccggc
     4381 ttccaatgca ccgcagccaa aatcccccgt gccgcagacg gcgtaatcac atcataagac
     4441 acccgttcta ccttcatttc aggacgggta aaacaagcat aatcacccca aatatggagc
     4501 ctgattttgt ttggcataat agaatgctcc ttttaattat gtaacacaca cctccccgaa
     4561 gggaggtgaa atttctttag cttatattat aactgctttg gtttcaaccc acgcactcag
     4621 taaaatgcga aaaattttat ggcttattat attaagcggt cggatttact tagaaagttg
     4681 caaagttatt tgagtattta accgcttgta tttcaaaaat agtcagaaaa ataacagcat
     4741 tctaggtaca atatttttct aagaacgaac ttgtctccgc aatgcctcta ctgcgtttga
     4801 cacagcattt ggtttgggct cctggtttgc ccaatcagac cagaattggc gtgtagcact
     4861 ttctggggct atatgcggtt tagcaagttt gattcgtgta ggtaatagaa tcgaatcgcc
     4921 tagcaataac gcttcgccta aatcaagtaa cggcaatata tcagtaattc caaccataga
     4981 ttccggcaat aaacgcttta caacactttg atcttgacca tttgttaatc gtaaaaccaa
     5041 gaaattatta cattgactca aaattgttcg gcttacatct gaaggacgtt ggctaacgac
     5101 caacaaagac acgccatatt ttctaccttc tttcgcaatc cgctcaaagg cttccaatgc
     5161 gcgtttttcc gctgcttccg ctgaatctcg aacagggaga tataaatgtg cttcatcgca
     5221 aataatcgtt agtggatggc gggaatcttt atccatccaa aattgaatgt tgtataaaag
     5281 gcgggcaaga actcccgtaa caatcggtaa aacatccgac gggacttccg aaaaatcaat
     5341 aatttttatc cctttttcgc tctcagaagc agaaaacagt tttgacaaca tattttccag
     5401 ccacccatag ctgttgcact ctactggcgg ttggaacata aaaccgcaac gtctgtcatc
     5461 tattttggct ttcatccttc ccataaacct agacaactta ctataccaag gaccttgctt
     5521 tgttcctgaa cctccctctt taggtaccat ctcagaatta tctttatcta aacgagctaa
     5581 caataattca atagaatacg gaattggcga atcaacagta aacgtttcca aaacatcatt
     5641 tctttcttcc ttattcaatg tttgctcttt taatgcgcga acatgctcag taaaacgcgc
     5701 cgcctgattc ggagcattat catcactgcg atctaaaatt aaagccagca tttattcccg
     5761 attgagcagc caatagggaa taaataaact gcgttcatct gaaccatcca aatctcccgg
     5821 tccagcaata cggtattgct gagcgatagc gtttttacct tcgcatagag tgctatattc
     5881 accgtgcata tcgaatacaa taagattagc agcttttaaa gctgctgcac gttccaatat
     5941 taatgcaact gaccagcttt taccggaacc agtactaccc aaaatagcag cgtgccgttg
     6001 aaagaattta tctccgtttg ctatagctac agccgtttca tcagccataa aatgacctaa
     6061 agtcagccgt tcattttctt ttacgttagc ggacaaaaga ttcataaata attgcagatt
     6121 gctgccacta atatgaaagc aatctctatc aatttgcgga aaacaatccg ctccccgctt
     6181 aaaagtgttg ctcaaactac catcaacagc tttataagta ccgattaata ctgccttgat
     6241 aaagtcatcc tgactttcac ccagaggaat ttcaccctca ttagatattt cttctagcag
     6301 caatttttca ctgatagaac gcgttacccg ttcgataatg ccgataaggt actcactagc
     6361 cgttctgcct tgaatcgcaa tcagattacc cacagcaata ctagtcattt gttgatgctc
     6421 ttcaacagaa atcaatacac ggctggtatc tactgttaca accctgccca aacgggcatt
     6481 gtctttaaaa ttcaatgttt catttgccat tctctaaaat ctcttttaca aaaaactcaa
     6541 cgtcccacca atgaacatta ggaataaaag tttcttcttg cttgctaacc acccttgttc
     6601 cagccttatc tccatcaaaa atcagagcct tacaattcgg agcttccttc accacgtttc
     6661 tggcattttc tgaaagtcct cttgtcagaa gtagtgtttt cacaccactt ttaattttgc
     6721 ctgtcaaatg tgtttgaagg tggtcatcat taaaaccata gccgatacat aaaattgaag
     6781 aagcagaatc aatagcttca tttgcttttt ctcgatgagc atcaaatggt tgtccatagc
     6841 cttttttata cttcccaaca ccaggcgtaa taattaaagg ctcttccact ttacctatac
     6901 aacttgtcat tggaacgtct ccagccataa accaatctaa actaccatgc ggtttaaaga
     6961 ttttgatatg atctcgttga catcctcccc tgcctaaagg caggggattc ctactagctc
     7021 ccacagcaag ctgtgggcta ctctcggtgg gtttctactg ctgatctcta ttgagattca
     7081 cttcatagac gcttcgggta tgtcctaccc tgatatttat tatgcttgga ctattgcttg
     7141 cccacgtgta agaacattca ttgctcccac tacatcggca ttttccgtat agccacattc
     7201 tacgcattca aaattttcct gtgtttggcg attttctttt gctgtatagt tgcaacaagg
     7261 gcaagtacga ctggtatttt gtggaggaac tgctagcaaa aatccgccta accattgcgt
     7321 tttgtagtcc agttgtcgtc taaattcaaa ccaagactgg tctaatatca ctcggtttaa
     7381 gcctgatttc tgtttcacat ttttgccgtg tacttccgct gtgcctttgg ctgatttgga
     7441 catattcgcc acttgcaaat cttcaacata gatcatcgcg tggtttttgc tgatttgcgt
     7501 tgagatttta tgcaggaaat cttttcggca gttggcgatt ttgtgatgta acttgccgat
     7561 tttatctttc agtttttgcc agtttttact gaacttcact ttatttttta gctgtttttg
     7621 cagttttgcc aattttcctt tgtgggtttt aaacgcattt aacggctcaa aaaattctcc
     7681 attggaaagg gttgcaaaac gagcaatgcc catatcaatg ccgatttctc cgcctttatg
     7741 cgtgggaatt tcctgtttaa attccgtttg aatgctcaca aaaaagcgtc cgcatttcat
     7801 tgaaacggtg acatttttta cttccccaac aatttcacga ctgttgcgat aacgcaccca
     7861 accgattttc ggcagataca agcggtcgtt tttctgctcg attttgcaac cttgcggaaa
     7921 acggaaactc tcttttacgc cttttttctt gaatttgggc aaatccgcac gcttttgaaa
     7981 gaagttttta aacgcacttt caaggtcttt taacgactgt tgaagcactt gtgaatggca
     8041 atctttaagc cataccaatt cttttttcca ttgcggaagc aagttggcga gcttggtata
     8101 actgaatttg tgatggttat cttgttcgta ctgctcattt tgccacgcca atgccttgtt
     8161 aaacacaaag cgagaacagc cgcaaaactg cttcattttg cgaacttgtt ccccatttgg
     8221 tctgatttca aatttaaagg ctttacgtag taacattgca cgaattagaa tacaaaaatt
     8281 gtgcttattc tacacttggc ctatgaaaaa agaaacagag attagacgtg gtcgccacgt
     8341 tgtttttaac ttacacgttc atttagtttt cgtgactaaa tatcgcaggg aagtttttac
     8401 tcaagcaatt ttgaacgact tacactcaat ttttgcaacg atttgtgctg attttgaagc
     8461 cacattagtg gaatttgatg gtgaagatga tcacgttcat ctacttgtgg aatatccgcc
     8521 taaagtcgct atttctcatc ttgtaaacag tttaaaaggc gtttcgagcc gaatgattag
     8581 aaagaaaaac tatccgagca ttcgcaaaaa attatgggga aatcaacttt ggtcaccgtc
     8641 ttactttgct ggtagttgtg gtggtgcacc aatatcgatt attcgccaat atatcgagca
     8701 acaacaaaca cctgattagt tagaaatttg aaacggcttt gccgtttata ccttatatcc
     8761 acgccctaaa ggacgtggtt ttacggcacg attagataaa ccaattttgg acatttacct
     8821 tttactctaa tgtctcttat ctgcaatttc ctactcaaat caggattatg ttttccccaa
     8881 taacgaccga ccatcattga atctattccc caattttcat actctgccgc aaactcaatc
     8941 aatctatcat aattagtagt aattacacgg gcaattttag gatttgaagc tgaaatatgg
     9001 ggaagcaaat aagaaaattt gagcttctga ttctcagcaa tacatttgtt tatcgctttt
     9061 tgctcttcgg agagtacata ctcggctgtt attttaataa tagcggcttc tatcgtctca
     9121 tttgcttgat gcttcaacaa tgcaccttcc aagccttcag aatccagaca atcagaaatg
     9181 gtattccatg ttaccttatc tatatcatca agacattcag gcattcgttc ttttaatcta
     9241 tcagctaatg ctcccattcc cggcaaacct tcggcacagg acaaacccga accgacaata
     9301 atgaccaaat tgtcagtaaa aatagtttgc aaccattttt ttaattcatc ttcatctaat
     9361 aatggttctc tcattttacg tttcccttcc aaatatctat tcttacaaac tagctgttta
     9421 ctacgagacg tcataggcta tttggtatat taaagtatat ctatgcaaaa ttaaacttat
     9481 aaagaagtta aaataaacat tcatctataa aaccaatttc tccgactcaa gaaaatccac
     9541 attctcccaa ctcaaccccg ccacttcatc atacaaatcc attccaatta agcagtaaaa
     9601 ctgtttgccg aagttggttt cattaatggt ttcaactctg ccagcgttat agagttcggc
     9661 taatgctttt tccggtactt gcacagtgta aggctggagt tttcttaaaa taccgcctac
     9721 ttgatccgca tagcgtaaac ggtcaataag gttttcggct tcttggtcga aagggataat
     9781 caccggaatt aaatggcttg tgatcattcg gaaatcttca gctatttttt ggaatgggaa
     9841 attaaggctt tgcccagcgt cgtgacacgc ctttaaaata tttggcttat ccagctcttt
     9901 tcctttagcc tcataaaccg cttggaaata atgattgatt gctttcggat taagtagatc
     9961 atctgcgtga acctgaaccg ttgaacgcat acagccagaa agtaagccta gctctggtgg
    10021 tgctttccac tgttcttcag gttggaaaac ccaaacattg ctttctacag ataaacgttt
    10081 cccctctcgg ttgcaacgcc ctgctgcttg agccactgaa tctagtcctg cttcagctcg
    10141 cataaccagt gggaaatcga catcaacacc ggcttcaatt aaagaagtgg caatcactcg
    10201 gcaaggtagg ttttgtttta ggcgaagacg aatttcagtc agcgtttgtg agcggtgttt
    10261 agcacacatt agcgtggtga ggtgataagc tccctctaac tgtttcgctg aatcatataa
    10321 cgctcgggcg tgacggcggt tattcacgat tatcagcatt tgtgggttat ctgcgagttt
    10381 gctttgcaac tccacatctg tttgaatacc gatatgcttt accgtagtac gtttcaattt
    10441 ttcaaaaagt gcggttggat taggggcaat ttctcgcaca ttttcaaatc ctttataaaa
    10501 accgttcgct tgatgaatag cgggttgtgt cgctgtgcaa agcactaccg aacattgata
    10561 attgcgagct aattcatcaa tcgcagccat aattgggcgt aataaattca acggtagcat
    10621 ttgggcttcg tccaaaataa tcacgctacc gacgatatta tgcaatttgc gacagcgtga
    10681 agaacggtcg gcaaacaaac tttcaaagaa ttgcactgca gttgtaacca caacaggagt
    10741 atcccaattt tctgatgcca atttcagctt atctcggctt gatttatcag gtaggctatc
    10801 gtgatcaaaa gtgctgtgat gttccaatac cgcctctgtt cctaattcgc caaaagcttt
    10861 acgaaattcc gcagcatttt gttcaataat gctggtaaac ggaataacat aaataatgcg
    10921 gcataaacca tactgtttag catgctcaag ggcaaacgcc attgaagtaa aggttttacc
    10981 accgcccgtt ggcacagtca gagaaaacag acctgtttcc tgttttgctt gagatacggc
    11041 ataatccaaa atttcactcc gcaagcggtt tacttccgct ttacgttgtg cttcctgcgt
    11101 attaggcgtt tgagtggcaa ttcgctccct aaactgtgca ataaattgat taaattgctg
    11161 atggagtgcg gttaaattgg ggtaatttcc tcgttcaagc ggtctttttt cgagattggc
    11221 ataaaaagct tctgtatcaa gaaagtcggc atcgacaagg caagaataga gcattcggat
    11281 aaaaaaggcg taagaaaaga aaggttcgtt tttagaaggc tttaacggcg gtaagggcaa
    11341 tttttcaggc aaattaagtt cttgctgcca aatagcgtca agtaccggta gatctttatg
    11401 accatagcca aattgctctt gcaaacgttg tgtaagtgta gaacgatttt tcccttctcc
    11461 agaaccattt gctaacccag cgtggtggcc tgcgatacaa aacgccatca ttttgcccaa
    11521 aggcccccaa cgttccactg caatttttgc accagcagta gagtgattta cccgttctcc
    11581 gccatgtaaa cgcttttggt aacgttcact atatttgcct aaatcgtgca atagccccgt
    11641 gcagcgagca atttcttgtg aagcaaacgg cgcagcaaat tcggcggcaa gcaagccaac
    11701 attattggcg tggctgagta aagtttgcca atctgaatga tctgaaagct tccccgaatg
    11761 ggcataaaaa gactgaatag tatgttcttc catttttata ccttcaatat ttccttccta
    11821 acacaagcaa tactacctct aaccttttat tctgtatata tcctagataa tattttctta
    11881 atctaaatca aacacaaatt tcacttgcaa aattcaagta aaatttgacc gcttgtaatc
    11941 attttttcta agttttgaaa tctgttcttt cagcagaaat ttcacaaaaa atttacttat
    12001 ctatggggat ttttgctaga atgttgccat ttttacgaca agttaaaggt attatcatgt
    12061 cagaacaaac ttttattacc ggtaaagatg ctgcacttga agacagcatt gcgacctttc
    12121 agcataaatt aaaaacctta ggttttaata ttgaagaagc ctcttggtta aatcctgttc
    12181 cgaatgtgtg gtcggtgcat attcgtgatg cagactgtcc gcaatgtttt tctaacggta
    12241 agggagcaag caaaaaagcc gctcttgcct ctgcattagg tgagtatttt gagcgtttat
    12301 ctaccaacta tttctgggcg gatttttatt taggtcaaga gattgctaat agtgaatttg
    12361 tgcattatcc aaccgaaaaa tggtttccga ttgatgatga agccattcca ccaatggaga
    12421 tgatggacga gtttttatgg gaatattttg atccgaatgg tgaaatcacg ccggaattat
    12481 tggttgattt acaatcagga aattatgatc gtggaattgt taccctacct tacgttcgcc
    12541 aatctgacaa tgaaacggtt tacattccgc aaagcattat cggcaacctg tttgtttcaa
    12601 acggtatgtc ggcaggcaac acaaaaaatg aagctcgagt gcagggctta tccgaagtgt
    12661 tcgagcgttt tgtcaaaaac cgtattatta ctgaggcaat cagcttgccg gaaattccgc
    12721 aaagtgtgat tgacggttat ccgacaatca aagcctctat cgagaaacta gagcaagaag
    12781 acttcccgat tttatgctat gacgcttcat taggcggaga atttccagtt atttgtgtga
    12841 tcttgttaaa cccaaataac ggtacttgtt ttgcctcttt tggtgcacac ccgaatttcc
    12901 aagtggcgtt tgaacgtacc gtaaccgagt tattacaagg ccgtagctta aaggatttag
    12961 atgtgtttgc cccaccttca tttaataatg aagatgtagc agatcatgcg aaccttgaga
    13021 cacactttat tgattcaagc ggtctaattt cgtgggatct tttcaaacgt gatgcggatt
    13081 atccgttcgt gcattgggac ttctccggca caacggagca agaatttaat aatatgatgg
    13141 cgattttcaa caagcataat cagcctgtgt atattatgga ttatgagcat ttaggtgtgt
    13201 acgcttgccg tattcttgca ccgggtatgt cgaatatcta tccaagcgat gatttggtct
    13261 atgccaataa caatatgggt atggattggc gtgaaatctt gttagatttg ccacatttcc
    13321 atcacgatgc tgaaacttac caagaactgc ttgatgaatt agatgagcaa agcattgatg
    13381 atttaacccg tgtgcgtgaa tttattggcg tggtggcaga gaaaggctct gcaatgcaaa
    13441 cattgcgtat cggtgagctt aaatcgatgc tgcatttagc tttaggtaac ttagagcaag
    13501 cctcagactg ggcaaactgg acagcgaata tgaatgcaag cgtattctca gcagaacgta
    13561 acaattatta ccgctgctta atccaatcga ttgagttgtt cttagatgaa gagcgtgatt
    13621 cggaacaata tcgtatggtg tttgagaaaa tgtacggtaa acaagcggtt gaagctgctt
    13681 ggggtgcaat ccaaggcggt aacccgttcc acggtttaac tgcatcggac gaatcgcttg
    13741 aaaatatgac tgcacatcag aaattactga acgcttatcg caaagtgcaa aaagcgaaag
    13801 taaatccgat tgcgagataa ttttatattt ttcgtagggg taggttctgt gcctgtcctt
    13861 tctatttact acctttcggg agggcatagg tctctcccct agacataaat ttcaaaatga
    13921 ttgactttcg tcctttttat caacaaattg ccacaaccga cctttctgct tggttagaaa
    13981 ccttaccctt acaactcaaa caatgggaaa agaccaccca cgctgactat gccaagtggg
    14041 caaaagttgc agatttttta ccaaattcga ccgcttgtat caatctaaaa gacaaggttg
    14101 agtctatttc aagcaagcct ttatctgagg gggaagtcaa gcaaattacc caccatttaa
    14161 agcaactaat gccgtggcgt aaaggccctt atcatctaca cgggattcat attgataccg
    14221 aatggcgttc cgattttaaa tgggatcgtg tgcttccgca tcttgcaccg ttaaaagacc
    14281 gcaccatttt agatgtcggc tgcggtagcg gttatcatat gtggcgaatg gtaggcgaag
    14341 gggcaaaaat ggtagttggt attgacccga ccgagctgtt cctgtgccaa tttgaggcag
    14401 tgcggaaact cttagggaat gatagacggg ctaatctgat tccacttggt attgagcaaa
    14461 tgcaaccgct tgctgctttt gataccgtgt tttcaatggg ggtgctttat catcgcaaat
    14521 caccgcttga tcatctttct caactcaaag cccaattagt cagaggcggt gaattggtgt
    14581 tagaaacgct ggtgattgat ggcgatatta atgatgtttt agtgccggct gatcgctatg
    14641 cgaaaatgaa aaatatctat tttattcctt ctgttgctgc actcattaat tggctggaaa
    14701 aagtcggctt taaaaatgtg cgttgtgttg atgaggcaat cactacacta gaagagcagc
    14761 gaaaaaccga ttggttggaa aatgaaagtt tagtggattt tttagatcca aacgatcata
    14821 gcaaaaccat tgaaggctac cctgctccga agcgggcggt gattttagcg aatgcttaaa
    14881 atgctagttt aagagaataa aaaatccgca tgtcaaatgc ggatttttta actaaatatc
    14941 taactgagca tacaaagcgt tagtttcaat gaaatctcgg cgtggttcaa cttcatcgcc
    15001 catcagcgta ctgaagagtt tatctgccgc aatcgcatcg gtaatattga cctgtagcat
    15061 tttacgagcc accggatcca tcgtggtttc ccataattgt tccggattca tctcacctaa
    15121 ccctttataa cgttgaatag ttaagccttt acgagattct ttcaccaacc aatctaaggc
    15181 ttcagcaaaa ctgctgattt cttggcgacg ttcaccacgc accacatagg ctgaatcaga
    15241 tagtaaatcg ttcagctcgt tgcctaatgc cacaatgcga gcgtattcat taccgttgat
    15301 aaagttgtaa tctaaacgat aggtactgtc cataccgtgt gtagtcacaa taatttccgg
    15361 ctcataaatt tggcgttctt cattgaacaa ggtattaata cggtagaaac tgccgcccac
    15421 ctcttttgcc atcaatgtag cgacaaattg ctcgctccaa gcggtcatat ttgcttgatt
    15481 ttttgcaaat tccaccgaaa gcggttttga ataaattaat tcgttaagta ataatgttgg
    15541 gtaacgacgg cttaaacgtt caattaattt ttgtacgccg ttatattggg caattaagtt
    15601 ctctaacgct acgccactta acgctggagc atcttcactc acatataagc ctgcaccttc
    15661 taatgcaata tcaatttcat attgcgacat ttcatcgtta tcttgaatat aacgctcttg
    15721 cttgcctttt ttcactttat aaagcggtgg ctgtgcaata taaatatagc cgttttcaat
    15781 cagctccggc atttgacggt agaagaaagt taataaaagc gtacgaatat gtgcaccatc
    15841 cacgtccgca tcggtcataa taatgatttt gtggtaacgt aatttttcca aattataatc
    15901 atcacgcccg atgcctgtgc ctaaagcggt aatcaaggtt gctacttctt gtgaagaaag
    15961 cattttatca aagcgggctt tttccacgtt cagaattttc ccttttaacg gcaaaatcgc
    16021 ttggttttta cggtcacgcc cttgttttgc cgagccaccg gcagagtcac cctccaccaa
    16081 gtaaagctcc gataacgccg gatctttttc ctgacaatca gctaatttac ccggtaagcc
    16141 gcctaaatct aacgcccctt tacggcgggt catttcacgg gctttacgag ctgcttctct
    16201 tgcacgggct gcatcaataa ttttggtaac gatatttttt gcatcgtccg gattttcggc
    16261 taaatagtcg gataaagcct cattcattga gctttccact gctccacgca cttctgacga
    16321 caccaattta tctttggttt gtgaggagaa tttcggatcc ggcactttca ccgaaatcac
    16381 cgctactaaa ccttcacggg catcatcacc tgaggcatca atgttcgcat cggctttttt
    16441 caataccccg ctgttatcca tatagttttt caacgcacga gttaatgccc cacggaaacc
    16501 ggctaagtgc gtaccgccat cacgctgtgg aatattattg gtaaagcagt acacattttc
    16561 gttgtaactg tcattccact gtagggaaat ttccacgcca atgccgtctt tctcagtggt
    16621 caaatagaat ggcgtattgt gaatatgagt tttgccttcg tttaaatact caacataggc
    16681 tttaataccg ccctcatatt taaaatgctc ttctttgccg tctcgttcat caattaattt
    16741 aatcgaaacg cctgaattca aaaatgatag ttcacgcaag cgtttagaca gaattttata
    16801 ttcaaattcg gttttatttt tgaaaatatc caaacttggc cagaaacgaa ccgacgtccc
    16861 cgttttttcg gtattgccga taatcgctaa aggtgcatca ggctcaccta agctatagaa
    16921 ttgctcgtga acgtgtcctt cacggcgaat agtgagttgt aatttagagg aaagtgcatt
    16981 caccaccgat acgcccacac cgtgcaaacc gccggaaacc ttataggagt tatcgtcaaa
    17041 tttaccgcct gcgtgaagaa cagtcataat gacttctgct gccgaaacgc cttcttccgg
    17101 gtgaatcccc accggaattc cacgaccgtc atcttgcaca gaaaccgaat tatcggaatg
    17161 aattgtgaca ataatgtctt tacaatgccc ggctaatgct tcgtcaatcg cattatcaac
    17221 cacctcaaac accatatggt gtaagcccgt accgtcatcg gtatcgccga tatacattcc
    17281 cgggcgttta cgcaccgcat ctaagccgcg taacacctta atactggaag aatcataact
    17341 tgttgcttga gtttgttcag acattcttat tcctactaat ttgaaatcga aaaaattgtg
    17401 ccgattatag cagaaaaatg cgtaaaagta tcgcaaaaca agcggttaaa ttttagttga
    17461 aattgcagtc tatctcaatt ctacaagacc acagattaaa ttttacaata ctccgcagac
    17521 agctcctcca ctttctgtac aaccctataa tccaaatcct tataatctct ctgtaagcct
    17581 ttgaaatgct tacgggcata gtcgattttc attcgttcac tttcatctaa tttttcttca
    17641 tctactcctg cttgaatacc tttgcctgta tttttcgttt cggcaaccaa gtaaatttta
    17701 ttttctccct taaacacaac tgcccaatcg ggattatagc tgcctaatgg cgttggaatt
    17761 ttaaaacgtt tgggtaattt aaaataaaac tccacttgct cactagattc acaatgtcgg
    17821 gcgaagatat tttctgtttg ggaatccagt gcaatatagt cttcataaat cgtttttgtt
    17881 ttatcttgaa cttcaaaagt atattgattg aggtaaaaat caaaatcgcc gaataacgtc
    17941 atttcatagg tttttccggc aattttgtga tattccaccc cgtctgtcat aatttgttgt
    18001 aaagcaaggt tgattttctc tgcaattaaa tcaataaagc gttgaggatt gcggaagact
    18061 tcttgcaagc ggtcggattt ttgtaaaatt ttgcaaaggg tcgcacgcgt cagcccggtt
    18121 ttcttttgaa tctcactcaa taaatcaggt atcgcccatt gtgtatttac cgctgtttca
    18181 ttagatgagc gataattagt tgaaatccct gtttcattca tttccaattt cactttggaa
    18241 tgcttaattt ttgtcgcctc gatatcgggc attttgcgga ttttttccac cgcactttca
    18301 atcaattccg cattactgaa atctacccga taagtggttt ggtgtttaat ccgttcccaa
    18361 attgccgcaa attccggatg taagctgaaa tctttacggt agcgaacggc ttttttatct
    18421 tcccgttttt taacattgct tttggcaaac tgtacaccac aatcttcctc aatttcacgc
    18481 tgtaatgtgg cggcaaattg ttcgtaactt tcatttgcga taattgtcag cgtatttaga
    18541 tgacgatcat aaatccgcaa tccttgttga ttcacaggca aacgcaagcc ccgcccaatc
    18601 tcttggcgtt ttttcatttc gcttgcagta tcgtttaaag tacaaatttg aaacacattc
    18661 ggattatccc atccttcttt taaggcagaa tgcgagaaaa taaaccgtaa cggattctcc
    18721 agcgaaagca atttttcttt atcccgcata atcagttgat aagtctcgtt atccgcttgc
    18781 gttgtgccat tagtatcttt tgctacgcct tttttatcct gtgagaaata accgttatgc
    18841 acgccttgag gctcttcttt ggctagctcc aaataaattt cctcaaacca ttttgcaaat
    18901 tttccccccg tagggctttg tgcagaaggg cgataattat ccactttatc gataaagaac
    18961 aaagacaaca ccttgatccc aagcggtcgt aatttctttt ctttttgcaa atgctcgcca
    19021 atagtgcggc gaatctgcat tttttgcaca tcttctttaa gttgggaatg ttccgcccct
    19081 tgaaaaattt gtgtgccgtt ggagaagcta accatttggc tatcggtatc cattccgctt
    19141 aatataaacc ctgaacgata catttcattt tggttggaaa gctcatacaa atcctgattc
    19201 ggtttcacgc taatcacttt ctttttcatc gcttttttat cgttaaataa aatttcgatt
    19261 tttgccgacc agctttttgc ccctgtttta atctctttga gggaaagata agctccattt
    19321 acctcatttt ccgccaatac gctatctacc tcaatttgtt taactaatcc catttcatag
    19381 gcttgcaccg gattgaggct aaaaatcggg ttatacgcat ttttatgggt ggcagaataa
    19441 cgcaaagtga aaagcggact taaactctca atcgcattac ggcgaatctc cgtttccata
    19501 ttttgcggtt catcaataat cacaatcgga ttcgcctgtt gaatatagaa aatcggagca
    19561 tcaccgcttt cattcacggt attaatcacg ttactttctt tggtgaaagc atcaatattc
    19621 atcactaaaa tttcaatatg attagcacta gcaaaggatt ttaagcgtga agtttggtta
    19681 cttttatatt caaatttttg attgacgctc gggttatcaa ataccgtatt aaaatggctt
    19741 tttgtagttt ccaacgtatg caacactccc tcacgaattg ccacactcgg cacgacaatc
    19801 acaaattttt gccagccgta ttgacggttt aattcaaaaa tcgtgcgtaa atagacatag
    19861 gttttccctg taccagtttc catttccacg gtaaaatttt ttccctgttc gacaagcaaa
    19921 gtgcggtcga ttttttgcct gttttgcaga ttagccaaat tctgttgtaa ctgctcatca
    19981 ctaatctgca agcctaaatt cggcacaaac cgcatatcat tttgggcttt gagtgaaaat
    20041 tcagttgcgg cattcggctg tccgacaaac aaatttactg tggcattaac ggcttgtaat
    20101 tgatactcta aggtttcaaa ttggagttcc attttttctc cttaaatcac aaaaaacgta
    20161 atgccggcat cttgcatttg caattcggtg tttttcttcc gggcatcatt gccgttgaat
    20221 aaacggtcta aagcgatgac ttttttcggt tgttgagcga taacagtttg aataatttct
    20281 tcgtcggctg catttaacag caaggcgaaa atcagcccgt tttcttccac ccaaaacacc
    20341 ttattttcca accgcacttt tgccgtgagt tttaacccta aacgcaataa aagctcatat
    20401 aaaacggctt gcgtatccgc tttttcacta acaggatcaa taaacatttc aagttgatcg
    20461 gctaaatttt cagatgtggg cgattgccat tgtttaaaat ggctttctgt cagtttgaag
    20521 actttaaaac ctacatcaag cggtcggttt tcggggttat tttgcaaaat ctgctttccg
    20581 gcacggcgaa tacgttcttt tgaaatttca gttatatata gtggtaaatt ttttctttgg
    20641 caaaattgct ttgctacttt tccattctta ctcttgatat caatttcttc aggatattga
    20701 accgcaataa attttctatt acccttatca attctattac tttccaatat tgcgtgtgga
    20761 aatgatgaac tgccagcaaa gaaatctaaa gaaataaaat ttttatcttc aaatagagtt
    20821 attaaatgtc ttaaaaaatt aggattttta ggtgcagaga aaacagggag ttttgtttcg
    20881 aataattctt ttagcagtgt tcctgccgaa gttgtcttaa catctagggt g
//
LOCUS       DANLXK010000033        20866 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.033, whole genome shotgun sequence.
ACCESSION   DANLXK010000033 DANLXK010000000
VERSION     DANLXK010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20866
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            529..813
                     /locus_tag="PXD88_000994"
     CDS             529..813
                     /locus_tag="PXD88_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005672808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1364 domain-containing protein"
                     /protein_id="HDL6280584.1"
                     /translation="MANLRKEAKGRECQVRLPGICNHNPETVVLAHYRMAGLNGVGMK
                     PDDIFGAWACSSCHDECDRRTRKLEADYVRQAHAEGVFRTQAILRREGKL"
     gene            810..1178
                     /locus_tag="PXD88_000995"
     CDS             810..1178
                     /locus_tag="PXD88_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL6280585.1"
                     /translation="MSDWLEIALPYPPSVNHYWKHTRNGRHYISDKGKAFRAEVVKIC
                     KMFDPFKGAVQTVLQIYYPDKRKRDPDNLEKALWDALKIGGLIEEDDNQILVDKRTIT
                     AGFKKGGMVVLKIKAVGNAN"
     gene            1168..1533
                     /locus_tag="PXD88_000996"
     CDS             1168..1533
                     /locus_tag="PXD88_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280586.1"
                     /translation="MQIDVKGVLNLWGGYVRFTDCKGYPTMQAFMRESPQERTKQRYL
                     ARLDDDTLEKVDRQMRKLQANDKRQFDVLFYKYAVGLENKQVWQKLSLSKTSYHTELL
                     LAERFMEGALAGSEIRLLL"
     gene            complement(1501..1695)
                     /locus_tag="PXD88_000997"
     CDS             complement(1501..1695)
                     /locus_tag="PXD88_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280587.1"
                     /translation="MALSRTEIVNRSNAKRGIKLKAFKLHESTIAQIEQLAQQLNIPQ
                     NQLIKLAVEKLQEQTNFTTG"
     gene            2122..2197
                     /locus_tag="PXD88_000998"
     tRNA            2122..2197
                     /locus_tag="PXD88_000998"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2155..2157,aa:Trp,seq:cca)
     gene            complement(2212..2790)
                     /locus_tag="PXD88_000999"
     CDS             complement(2212..2790)
                     /locus_tag="PXD88_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280588.1"
                     /translation="MIEFDQIDDSFYHFPFRPRPGDTSSDTATPCIGGVDLVSNPEKV
                     ELIPEAAHSPMLKKLLTDLNTPNSKLLTLGCAYWAHKDNRDTSYAYLEFSFREHSVAT
                     NLEFIRSIDEQFEQFLQENKKQLSIEFSVPEQAFDIVSQALFWSIRPFSYFGSEERIL
                     IYFQAGSPRHQDLEIFLDLLHRFLTEYLVVPA"
     gene            2909..3253
                     /locus_tag="PXD88_001000"
     CDS             2909..3253
                     /locus_tag="PXD88_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL6280589.1"
                     /translation="MPEKNPDIYTQAWNYLVMFLSNHNGWICGVIIAFFTSITKSFLY
                     GKTDTPKRVLAEAILCSVIAGSMRPILIYLNADVSLITPIGAGIGLLGTSAIRQMILK
                     FLNKKAGGENVD"
     gene            3243..3836
                     /locus_tag="PXD88_001001"
     CDS             3243..3836
                     /locus_tag="PXD88_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL6280590.1"
                     /translation="MWISESKFKQVFPNAVSGIYSIIDKHIEKAGCKTKEQQAMFLAQ
                     CGVECAGYSVFEENLNYSATALLRTFPKYFSQHNVVLYARDKRAIANRVYANRMGNGN
                     EQSGDGWKYRGRGLIQITGKANYIEFAKWEGLPSLVTDPDQITKNLALTVQVAVWYWV
                     SRKLSEFSDILTVTKKINGGTHGLTQRTAYYKKLMAD"
     gene            3837..4166
                     /locus_tag="PXD88_001002"
     CDS             3837..4166
                     /locus_tag="PXD88_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL6280591.1"
                     /translation="MIKYIYLAATVMILGLCGWIWHQSKQIDGLRAENQTQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLH"
     gene            4132..4365
                     /locus_tag="PXD88_001003"
     CDS             4132..4365
                     /locus_tag="PXD88_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280592.1"
                     /translation="MVLLIALSGCTSKTIVSTEYLYPPAAYLVPCERTAFSGKTYGDT
                     VDYLIKVMGERDLCASQIDRIREWQAQTKQGFK"
     gene            4632..5108
                     /locus_tag="PXD88_001004"
     CDS             4632..5108
                     /locus_tag="PXD88_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HDL6280593.1"
                     /translation="MDNLFDLKLNINQIAELTGLHRQTVSQRVAGLNPALGSNSKLKL
                     YALRDLILTGLAEKMSADVDSLSPADRRAWFQSENERLKFEKEIGELIPASEVALEMS
                     ALAKTVVQALETLPDILERDCGLQPKDLIRVQQVTDDVRDQMALHIQEVTTDTENE"
     gene            5108..7219
                     /locus_tag="PXD88_001005"
     CDS             5108..7219
                     /locus_tag="PXD88_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL6280594.1"
                     /translation="MFASAKEIRRDIANAIKAPRRMRVSEAVAEYMRVPLGGGNSVKW
                     DKHTAAYMLEPMDCLNSREYDAVIFVGPARTGKTIGLIDGWITYSIICDPSDFLLVQL
                     TQEKASEHSRKRLDRTFRCSPEIAKRLSPRKNDNNVHDKYFRAGNLLKIGWPSINVLS
                     SSDYKYVALTDYDRWPEDVDGEGDGFSLASKRTTTFMSAGMTLVESSPGKDIVDLKHI
                     PKSTHEAPPTTGILSLYNRGDRRRFYWQCPDCSEYFEPSMANMVGYREDSDFVKASEN
                     ARLQCPHCQTLIAPELKRELNIKGVWLKEGQKIDASGQISGESRKSRIASFWLEGPAA
                     AYQTWAQLTYKLLNAEHEYEMTGSEETLKAVTNTDWGLPYLPRSALEQRRSDELMERR
                     EEVEEKTVPAQCRFIVAAVDVQGGKNRRFVVQMVGYGENGERWLIDRYNISHTLPDSD
                     GVIEKIDPRIPDDWYILISDVLEKRYPLAHNPNHFMPILAMAVDSGGEDGVTDNAYQF
                     WRKCRRDGYAKRVYLVKGDSTKRQKLITKTYPDNTARSDRHSSARGDVPLYLLQTDYL
                     KDRINNALFRDTVGANYIHFPDWLGEWFFNELTYEERGADGKWRKPGKGNNEAFDLFC
                     YAHAIAILRGYERIKWGDENDVPSWAKLPDINPNIIRETPRTAEQAVEIEEKSEKPQP
                     KPTKAKSSWLSGGGRKTGGWL"
     gene            7216..7440
                     /locus_tag="PXD88_001006"
     CDS             7216..7440
                     /locus_tag="PXD88_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280595.1"
                     /translation="MSLYTIDELKQKIRTLDEKIETAQSQVSFNGRSVSYQVAELTKQ
                     RDRYQTMLDEQLAQSGQRTKQHRIKYARFI"
     gene            7440..8939
                     /locus_tag="PXD88_001007"
     CDS             7440..8939
                     /locus_tag="PXD88_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL6280596.1"
                     /translation="MNFLEKTIATLSPKWAANRSRNRYVLNAYEAAQPSRTHKASRES
                     KGANSTVRQSAVSLREQARALDQNHDIVIGILDKMEERVIGSKGIHIEPQPLTLAGEV
                     HEELAGQIRKLWAEWSVKPDVTGLYTRPLLERMLLRTWLRDGEVFVQLVKGKVAGLEH
                     GSQVAFSLEALEPDFVPMQSDEAKNGLVQGVFLNAWRKPTAYQVYLDNPQESNGMYGK
                     VKTVPADNMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAARIAAAMTMYI
                     KKGDAALYDDDSNSDGERLFDIAPGAVIDDLKPGEDIGLINSNRPNVNLETFRNGQLR
                     ATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRPIYREWLKMA
                     IASQAIKLPPDIDQNSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLATEGQAIRASG
                     NNPAEVKRQRIVEIKENQAEGLKFDTDLTNYGGQDKSFSNQKDEINEDE"
     gene            8951..10912
                     /locus_tag="PXD88_001008"
     CDS             8951..10912
                     /locus_tag="PXD88_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HDL6280597.1"
                     /translation="MKTWFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGNNL
                     KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEIIMPEN
                     AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWL
                     TGKECVEQGFADKLAEPLVAMACIQSKKLEDYTKMPDKIKNMLFAPQGNAGANPKHEQ
                     PQTPPQAGENPQNVAKPDAMVALAQRNATIKATFAAFGTQFDGLLAECLADVSMTAEQ
                     AKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAGQDTDKTNARDNAYNA
                     MTLRELARASLVDRGVGIAGYTPMQMVGLAFTHSSSDFGQILIDVAHKSLLKGWETAT
                     ENYEQFTTRGTLTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTIGDEGASVALATYGQL
                     FSITRQAIINDDMHLLTKIPEKMGAAAKATITKLVFALITGNATAQDGKKLFDATHKN
                     SLTGAALNVENIDKAIQLMNGFVNSRGEPLSIEPEFMLLPTSLHTKAKQILGSSSVEG
                     ADINSGIINPIRDIVSPIKSPRLQIADPKSWYLLNKEAIEVSYLDGVDSPYIEQQHGF
                     TVDGVSTKVRIDAGVNVIDYRGVVKVTNA"
     gene            10986..11309
                     /locus_tag="PXD88_001009"
     CDS             10986..11309
                     /locus_tag="PXD88_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HDL6280598.1"
                     /translation="MAKNYIQDGNTVRLTATKAITSGDVIVAEDLIAIAVSDAAKNDA
                     VVGLTTGVFSVKAKQADDIKQGAVLYWSETEGATLTAGSNKRLGIAWKDSGTSSNQVD
                     VKINV"
     gene            11302..11604
                     /locus_tag="PXD88_001010"
     CDS             11302..11604
                     /locus_tag="PXD88_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280599.1"
                     /translation="MSSPFEQAIAAADQTIQQTMMSEWLIGGKPYPATFDEAPAIFNG
                     LHSTDDRAIHGTERTLTLFRASGYKPRLDDRVSGNGKKYLVKSYHFVDQLIVLQLE"
     gene            11608..12132
                     /locus_tag="PXD88_001011"
     CDS             11608..12132
                     /locus_tag="PXD88_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280600.1"
                     /translation="MGSQVTGLKELQASLKKIARQTVPKAAAQAIRTVGRQAMNKAVK
                     SVAAEIGVNQKTIKGRAKMTAKPTPSRLQATIKVNRSHMPMIRVLERKSNRLSPTKGS
                     IRVGKHTVQRGFRQRLANGRTHIMYRQGRKRYGIDVAKVPLSQPLTQAFDRELKNYPE
                     QVQAELAKQIAGKL"
     gene            12129..12524
                     /locus_tag="PXD88_001012"
     CDS             12129..12524
                     /locus_tag="PXD88_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280601.1"
                     /translation="MKIHTKIRKEVLELLQTKLPEIDNFYNGLPTFIDIEEEQLAVSV
                     YLDDISLQEITVCNNQWDAKLNITIHLKSTESAEDELDEWAEKIREIIDDYPEFEHLE
                     SVALSQYQYEQDQNQRTWHMATLIFDVEY"
     gene            12552..13193
                     /locus_tag="PXD88_001013"
     CDS             12552..13193
                     /locus_tag="PXD88_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280602.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIELTGCGQLDGIYPVLSVTTDQVKLCEEVNWTGKDLPANYTKAKAALVQYSEQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            13277..13678
                     /locus_tag="PXD88_001014"
     CDS             13277..13678
                     /locus_tag="PXD88_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280603.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGVLLFNPLDINDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            13723..13953
                     /locus_tag="PXD88_001015"
     CDS             13723..13953
                     /locus_tag="PXD88_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL6280604.1"
                     /translation="MPERHFAEYRLFYQEQPFGLWRDDYRTAQLAHLTAMFNRDPKGK
                     APKLAEFMPFFNRTDEVEEIEDDGVADYLAKR"
     gene            14016..14243
                     /locus_tag="PXD88_001016"
     CDS             14016..14243
                     /locus_tag="PXD88_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280605.1"
                     /translation="MFEALDRFMINTIKIAIIVFLVACIFISMPNWWIASILVLFPTA
                     YLLDKYWWRNTEMYRRKMDKLVEEMKNNRQI"
     gene            14297..17848
                     /locus_tag="PXD88_001017"
     CDS             14297..17848
                     /locus_tag="PXD88_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6280606.1"
                     /translation="MSSSNRLTITLDVENSKLLAGFAQSDTVANKFARSFIVNMDQAQ
                     QKARQFADRSTKYLKNIEQAANNLNSSVSKERFWQIANRLQFPTSKVISYANSYTELG
                     NKLKLVTESESQHARAMAAVYDISLKTAQSTQATSSVYQTFAQNAKQLGISQNDVAKL
                     TETVAKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPSVIQAIAKGLG
                     ITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQNLSTAAEKWVG
                     EMDSTVGASQKAVAVLNALNAHFDTFAKTALVAGGAFVLFKGYMSVRPFIEARAAIYE
                     NRKAIIAENQARQQTIATRQQELVVLSQQTALKLEQTLQTYNQNKAELEAIAVKQQKI
                     TKEREEIAVAIQAAATRTERLALSAELQALDQKEIALGQQKIAVERQQIATKQALKVA
                     YAENAVAQSAMNAGMVTATTTTRAMNGVLAAARAELNLLKAAALSNPLMTLAMVATTA
                     GTALWGFFESQKAAREEALRYADSLDSVRANIEKMTKAQTDAEMVKLSRSIKEQETAL
                     ASLKQRQAELTREIEQGATVLDDAFGAGVRFEKSAKELAKAQEELKLVTADVEKAQNT
                     LNASLEAQEALQAHVPIANLREEFVKLYPHIDESQIKVDGLNIAIGNFTVKSPEMVIA
                     ANNIANALGGVAGEAMRAAILVANLSSMKLDANGAAIIDPKHLEKIEQIERNNAIASA
                     KGKDKIALQVKDALIKSGMKEGDAGYERLKAAYEQQFTLQNAPKRGGKPKKTKAERSA
                     ESYQNQVAEMTNRLSGLKIDKEDLVKYGGISQYQEVRKLTEDIALNAEKYKNYGTEGV
                     AKLKELAAKIDSEQQLLDIEQFQVDHDKKLEAMQFELDLLGKTRTEKELLQFNNQLDL
                     EAERLKINMTKENIALLDQKIAKIKEEYELHQKKQEETRASVMMGIKEGWNNIETDVS
                     NVAANVANITQNTFDGMADSLTNFVMTGKADFRSFANSILSDLSKMIIKMMLFNAIKQ
                     GATMLFGYQGPTTTVNGNAVYGLGTWATGGYTGNGGKYTPAGIVHKGEYVITKEATSR
                     LGLDYLNYLNYGRRGFASGGGVAVPRVPSSSYQPKSAQSSISVQVINNGEPVDAKVSQ
                     KQQGEQTQITVELMRKIARQEANGMIQNNFRAGGVFA"
     gene            17848..18177
                     /locus_tag="PXD88_001018"
     CDS             17848..18177
                     /locus_tag="PXD88_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280607.1"
                     /translation="METLQWCVRTDLAVENTPEIMEVKFGDGYTQRSPKGLNNLLRAY
                     TGTIKVKKGEHLAVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMVGLNHWEFS
                     VTFKEVP"
     gene            18177..18893
                     /locus_tag="PXD88_001019"
     CDS             18177..18893
                     /locus_tag="PXD88_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6280608.1"
                     /translation="MPVSISNQMKLDLAKLEQNAMLDLYEVDLRTLKDKSGNAGSVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLVTGIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKATSDPKADKCSHCLNG
                     CELRGNQRNFGGFVSVNKLG"
     gene            18897..19628
                     /locus_tag="PXD88_001020"
     CDS             18897..19628
                     /locus_tag="PXD88_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6280609.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFDRQDDWWHTGQNLYLDNIQG
                     QGFERVGTPQIGDVILMQVGADVPNHAAIYIGEQMVIHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLADKLDFDGILNDIAVNN"
     gene            19897..20487
                     /locus_tag="PXD88_001021"
     CDS             19897..20487
                     /locus_tag="PXD88_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6280610.1"
                     /translation="MITVKFYGHLRKFGTDFKLEVKDTAEAIRALCTQIRGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFQAVLGVALIGAA
                     FFLGPVGWGVLGASSAMMMGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETMTVEV"
     gene            20490..>20866
                     /locus_tag="PXD88_001022"
     CDS             20490..>20866
                     /locus_tag="PXD88_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280611.1"
                     /translation="MGLFSRKRKNHTPKEAPETGRSKQIVNIVELLCEGEIEGLVDGF
                     KSIYLDGTKIQNDDDSYNFNNVSGQLNVGTQDQEVLEGYDSSQNEVSVGVEVKKKNGA
                     IVRTVTDERISRLRLTLGVRSLF"
BASE COUNT         6458 a         4236 c         4883 g         5289 t
ORIGIN      
        1 tttctttgtc aattcttact cttagatata tcgggtactt attgatttat ccattagcat
       61 tttttgtggc agtcggtagt tttattgtta tcggtcaatg gaaatatcaa gaatgccttg
      121 atgactttaa gagcgatttt aatccgattt agtgtgtgtt tattaattcc ctcgaattcg
      181 ggggtaggag aaatcaaaat gacaaaaatt ctttgaaact atcgcactcg tgatgttatt
      241 tggcattatt ccaagctgtt tattggcgat taatactact ttaatgaata ttaaaaacgc
      301 accgtggttt atggtgatta ttcagttagg gttttggatt ttaatatcgt ttgttatcgg
      361 ttgcggatta ttccttttat gtggaatgtt atttaattta aggagattaa taagtgagcc
      421 agtgcaatga actgactgta attttaatca ctatcgctat tcttagtgta tgtgccggtt
      481 cactcttttt tattgagtgg tttgataaaa gagaccaagg aggttggaat ggctaatcta
      541 cgcaaagagg caaaaggcag agagtgccaa gtccgtttac cgggtatctg taatcataat
      601 ccggaaacgg tggtattggc tcactatcga atggcaggat taaacggtgt gggaatgaaa
      661 cccgatgata ttttcggggc gtgggcttgc agtagctgcc acgatgagtg cgaccgtaga
      721 actcgcaaat tagaagcgga ttatgtgaga caggctcatg cagagggcgt atttagaacg
      781 caggctattt tacggagaga agggaaatta tgagtgattg gcttgaaatt gcgttgcctt
      841 atccgccgag tgtgaaccat tactggaagc atacccgaaa cggtaggcat tatatttcag
      901 ataaggggaa agcctttagg gcggaagtgg tgaaaatctg caaaatgttt gatccgttta
      961 aaggagcggt acaaacggta ttgcagattt actatcctga taaacgcaag cgtgatccag
     1021 ataatttaga aaaagccttg tgggacgcat taaaaatcgg tggcttaatt gaagaagacg
     1081 ataatcaaat tttagtcgat aagcgaacca ttacggcagg ttttaagaaa gggggaatgg
     1141 tggtgttaaa gattaaggcg gtgggtaatg caaattgatg taaagggtgt attaaattta
     1201 tggggtggat atgtgcgttt taccgactgc aagggctatc cgacaatgca ggcatttatg
     1261 cgtgagtctc cacaagagag aacaaaacag cgttatttag cccgcttaga tgatgatacg
     1321 cttgagaaag tcgatcggca aatgcggaag ctacaagcga acgacaagcg acaattcgat
     1381 gtactatttt ataaatatgc agtagggtta gagaataagc aggtttggca gaagttatcg
     1441 ctcagcaaga cttcatatca tacagaatta cttcttgctg aacgatttat ggagggggca
     1501 ttagccggta gtgaaattcg tttgctcttg tagcttctca acggctaatt taattagttg
     1561 attttgggga atatttaact gttgggcaag ttgctcgatt tgtgcgattg tgctttcgtg
     1621 cagtttaaag gctttaagtt taattccccg ttttgcgttg ctacggttta caatttcggt
     1681 tcttgacagt gccatcataa atccttaata taggttttga agagtaggga gatttctccc
     1741 cctacttagt ttcattcaat tagtatgctg gcaggctaat cactaagaga atgataacta
     1801 ggataatgcg gtaaagcatt tgttatccct ccaaaagtcg gtgggattaa aggtcgccac
     1861 cggctcgttt ccagcactat tactgaaaac aagtttatta tatgttggat aaccaatata
     1921 ttcaagcaaa atatcgttaa aaagcccatg gttttgtaaa ttatgggctt ttttgcattt
     1981 aaatgattaa aaagtgttgc aaagttcgga cttaatctat attatttatg gtaagttgcg
     2041 gttcattgca taggtggtga acttaaaaga attttacagc cctgagcaga aatgcttggg
     2101 gcttttttgt ttacggattt taagggtgta gctcaatagg tagagcaacg gtctccaaaa
     2161 tcgttggttg ttggtttgag tccaaccacc ctttccaaat gcgagtaaat gttatgctgg
     2221 aacaactaaa tactcagtca aaaagcggtg tagtaaatcc aaaaagattt ctaaatcctg
     2281 atgtcgagga ctaccagcct gaaagtatat caagatgcgc tcttcgcttc cgaagtaaga
     2341 aaatggacga atactccaga aaagagcttg tgaaactata tcaaatgctt gctcaggcac
     2401 ggaaaattca atagataact gctttttatt ttcttgcaag aattgctcga actgttcatc
     2461 aatacttctg ataaattcta ggttagttgc aactgaatgt tcccggaatg aaaactctaa
     2521 gtaagcgtat gatgtatctc tattgtcttt atgagcccaa taagcacagc ctagtgttag
     2581 aagtttgctg tttggagtgt tcaagtctgt gagtaacttt tttaacattg gggagtgtgc
     2641 ggcttctggt attagttcta ccttttcagg attggaaaca agatctactc caccaataca
     2701 aggtgtggca gtgtcgcttg aagtgtcgcc cggacgtggt ctaaatggga agtgatagaa
     2761 actatcgtca atttgatcaa attcaatcat ttttaacctc tgctagttta tttgttgggg
     2821 aacagtattc tagcagaatt tttaaccaag gctcagtttt acgactgggc ttttttattg
     2881 cctcgaaacg gggtggagta tgaatacaat gcctgaaaag aaccctgata tatatacgca
     2941 ggcttggaat tatcttgtaa tgtttttaag caatcataat ggctggattt gtggcgttat
     3001 cattgctttt tttacatcta ttaccaagtc atttctgtat ggtaaaacag atacacctaa
     3061 acgagtgctg gcagaggcta tcttgtgtag cgttattgct ggctcaatgc gtcctatttt
     3121 aatttatctc aatgctgatg tatcactgat tacccctatt ggtgcgggaa ttggattatt
     3181 gggtacaagt gcaattcgcc agatgatttt aaaattcttg aacaaaaaag caggtggtga
     3241 aaatgtggat tagtgaaagt aagtttaaac aagtattccc taatgcagtt agtggtattt
     3301 actcaattat tgacaaacac attgaaaaag caggctgcaa aacaaaagag caacaagcga
     3361 tgttcttggc tcagtgtggt gtagaatgtg ccggatatag tgtatttgaa gaaaacctta
     3421 actattctgc aactgctcta ttgcgaacat tcccgaaata ctttagccaa cacaatgtcg
     3481 tactttatgc tcgagataag cgtgctattg ctaatcgggt gtatgcaaat cgaatgggta
     3541 acggcaatga acaaagtggc gatggttgga aatatcgtgg gcgtggctta attcaaatta
     3601 ccggtaaggc aaattatatc gagtttgcta aatgggaagg cttaccaagt ctagtgactg
     3661 accccgacca aatcactaaa aatctagcat tgacagtaca ggtggctgtt tggtactggg
     3721 taagtcgcaa gttatccgaa tttagcgaca ttcttactgt tactaaaaag attaatggcg
     3781 gaacgcacgg tctaactcag cgtacagctt attataaaaa gctaatggcg gactaaatga
     3841 ttaaatacat ttatctagct gccacagtaa tgattttggg tttgtgtggc tggatttggc
     3901 accagtccaa gcagattgat ggcttaagag ccgaaaacca aacacaagcc caaaccattg
     3961 agcagcagca aaaagccaat caacggctaa ccgatagctt agagcaagag cgacaagcgg
     4021 tcgaaaaaat ccaaaaaatt gcaaatgagc tgcggaataa agtggagatg gccaagaatg
     4081 aaattacatc aatactggca caagacagtt gtgctaaggc tgatttgcct aatggtgttg
     4141 ctgatagcat taagcggttg cactagcaaa acaatcgtca gcactgagta tttatatccg
     4201 cctgcggctt accttgtgcc gtgcgagcgg acagcattta gcggtaaaac ctacggcgat
     4261 acggtggatt atctcattaa agtaatggga gagcgtgatt tgtgtgcgag tcaaattgac
     4321 cgtattagag agtggcaagc acagactaag caagggttta aataacttgg cggattaaac
     4381 cgctaatgag agtgggagct taattgctcc cttttcattt gcgttacatt acttagttat
     4441 gcttttgatt gtatcaagat cataactaag caatgtgttg catagtttgt aaaaggtact
     4501 cccgagggga tacccctttc cacggggttg cggcagcgtg gttttcggca attttttgag
     4561 tttctaggca tcatcatctt cctatgatgt tgctgttttt taggcggttt tgatttttag
     4621 gatttgagca aatggacaac ttatttgatc taaaacttaa catcaatcag atcgccgaac
     4681 tcacaggatt gcaccgccag acggtatctc agcgagtcgc tgggttaaat ccagcactcg
     4741 gtagtaatag caaattaaaa ctctatgctc tgcgtgattt aatcctcacc gggttggcgg
     4801 aaaagatgtc ggcagatgtc gatagcctat cacctgctga tcgtcgtgcg tggttccagt
     4861 cggaaaacga aagactaaaa tttgaaaaag aaattggcga gcttatccca gcaagcgaag
     4921 tggctcttga aatgtcagct ttagcaaaaa cggtagtaca agccttagaa accttgcctg
     4981 atattttaga gcgagactgc ggattgcagc ctaaagattt gatacgagtg cagcaagtaa
     5041 ctgacgatgt acgagaccaa atggcattac atatccaaga agttaccact gacacggaga
     5101 atgaataatg tttgctagtg ctaaagaaat tcgacgtgat atagcaaatg ccataaaagc
     5161 acctcggcga atgagagtgt cagaagcagt agcggaatat atgcgtgtac cacttggcgg
     5221 aggcaactcg gtcaaatggg ataagcacac cgccgcctat atgttagaac cgatggactg
     5281 cctcaatagc cgagaatacg atgcggtgat ttttgtcggc ccggcacgaa cgggtaaaac
     5341 catcggcttg attgacggct ggataaccta ctcaattatc tgcgatccgt ctgatttcct
     5401 gttggtgcaa cttacccaag agaaagctag cgaacatagc cgaaaacggc ttgaccgcac
     5461 attccgctgt tcgcccgaaa ttgccaagcg gctaagccca cgcaaaaacg ataacaatgt
     5521 ccacgacaag tatttcagag cgggcaactt gctcaaaatc ggctggccgt ctatcaatgt
     5581 gctttcttca tcggactaca aatatgttgc tctgactgac tacgaccgct ggccggaaga
     5641 tgtggacgga gagggcgacg gtttctcgct tgcctcaaag cggacgacca cctttatgtc
     5701 agcaggaatg actttggtgg agagttcgcc cggtaaagat attgttgatc tcaaacatat
     5761 cccgaaaagc acccacgagg ctccaccgac taccggtatt ttaagcctct ataatcgagg
     5821 tgatcgccgt cggttttact ggcaatgccc cgactgctcc gaatacttcg agccgtcaat
     5881 ggcaaatatg gtcggctacc gtgaagacag tgattttgtc aaagccagcg aaaacgcacg
     5941 gttacaatgc cctcactgcc aaaccctgat tgcccccgaa ctcaaacgag agctaaatat
     6001 caagggcgta tggctcaaag aggggcaaaa aattgatgca agcggtcaaa ttagtggcga
     6061 aagtcgcaaa tcccgtattg cctccttttg gcttgaaggg ccagcggcag cctaccaaac
     6121 gtgggcgcag ctcacctaca aactgctcaa tgccgaacac gaatatgaaa tgactggcag
     6181 tgaggaaacc ctcaaagcgg taacaaatac cgactggggg ttaccttact taccacgatc
     6241 tgcattagaa caacgccgtt ctgatgagtt gatggaacgc cgagaagaag tagaagagaa
     6301 aactgtacca gctcaatgtc gctttattgt ggcggcggtg gacgtacagg gcggtaaaaa
     6361 ccgccgattt gtggtgcaaa tggtcggtta cggtgaaaat ggcgaacgct ggttgattga
     6421 ccgctataac atctcacata ctttgcccga cagtgatggc gtgattgaaa aaattgaccc
     6481 tcgtattccc gatgattggt acatactgat ttcggacgta ctagaaaaac gctacccact
     6541 tgcccacaat ccaaaccact ttatgccgat tttggcgatg gcggtggaca gtggcggtga
     6601 agatggggta accgataacg cctaccaatt ttggcgcaaa tgccgccgag atggctatgc
     6661 gaaacgagtc tatttagtca aaggcgacag caccaaacgg caaaagctga ttaccaaaac
     6721 ttaccccgac aataccgcac gaagtgaccg ccactcctcc gcacggggcg atgtgccgtt
     6781 gtacttgctc caaaccgact acctcaaaga tcggattaac aacgccctgt tccgtgatac
     6841 ggtgggggcg aactacatcc acttccccga ctggctaggt gaatggtttt ttaacgaatt
     6901 gacctacgaa gaacgaggag cggacggcaa atggcggaaa ccgggcaaag gcaataacga
     6961 agccttcgac ctgttctgct atgcccacgc cattgcaatt ttacgaggct acgaacgaat
     7021 caaatggggc gatgaaaacg atgtgccaag ctgggcaaaa ctgcccgaca tcaaccctaa
     7081 tatcattcgg gaaacgccaa gaacggctga acaagcggtc gaaattgaag aaaaatccga
     7141 aaaaccacaa cctaaaccca ccaaagcaaa aagcagttgg ttaagtggtg gcggtagaaa
     7201 aacaggaggc tggctatgag cctttacacc atagacgagc ttaaacaaaa aatccgcacg
     7261 cttgatgaaa aaatcgaaac cgcccaaagc caagtgagct ttaatggtcg gtcggtttca
     7321 tatcaagtgg cggaactaac caaacagcgt gatcgctatc aaacaatgct ggatgaacaa
     7381 cttgcccaaa gcgggcaacg caccaaacag catcgaatta aatatgcgag gtttatttga
     7441 tgaacttcct cgaaaaaacc attgccaccc tttccccgaa atgggcggca aatcgctctc
     7501 gaaatcgcta tgtgctaaat gcctatgagg cggcacagcc tagccgaacc cataaggcaa
     7561 gccgagagag caaaggggca aactctactg ttcgccaaag tgcggtcagc ctacgggaac
     7621 aagcccgagc cttagaccaa aatcacgata ttgtgatcgg cattctcgac aaaatggaag
     7681 agcgggtgat tggctcaaaa ggcattcata ttgaaccgca gccgctgacg ttggcaggtg
     7741 aagtccacga agaattagct gggcaaatcc gaaagctgtg ggcggaatgg tcggtgaaac
     7801 ctgatgtgac gggattatac actcgcccat tgctagaacg aatgctactt cggacttggc
     7861 tacgagacgg cgaagtcttt gttcagttgg tgaaaggcaa ggtggcaggg ttagaacacg
     7921 gctcacaggt tgctttttcc cttgaagcct tagagccgga ttttgtgcca atgcaatccg
     7981 atgaggcaaa aaacggcttg gtgcaaggcg tgtttctcaa tgcgtggcgg aagccgactg
     8041 cttaccaagt ctatttagac aatccgcaag aaagcaacgg aatgtacggc aaagtgaaaa
     8101 ccgtgccggc agacaatatg ttgcacctcg cctttcgcaa gcggttacat caaattcgtg
     8161 gtgtaagtat gttgcacggt gtgattgtgc gattggcgga tctgaaagaa tacgaagaga
     8221 gcgaacgagt tgccgctcgc attgccgccg caatgacgat gtacattaaa aaaggcgatg
     8281 cggcactgta tgatgacgac agtaacagcg atggcgaacg cctgtttgat attgcccccg
     8341 gtgcggtgat tgatgattta aaaccgggtg aagacatcgg cttaatcaat tccaaccgcc
     8401 cgaatgtgaa tttggaaact ttccgcaatg gacaactgcg agccactgcc gccggtactc
     8461 gttcgagcta ttccagcatc gcccgagact acaacggcac ttactctgca cagcgacaag
     8521 agctggttga aagttttgaa ggttatgcgg tgctacaaga tgcgtttgtg gcggcaatca
     8581 gccgcccgat ttatcgggaa tggctcaaaa tggcaatcgc ctcacaagcg atcaaactgc
     8641 cgcctgatat tgaccaaaac tctctcttta atgcggttta ttcaggtcct gtaatgccgt
     8701 ggattgaccc aatcaaagag gcgaatgcgt ggaaagaacg aattaaaggc ggtttagcca
     8761 ccgaagggca agcaatccga gccagtggca ataacccagc cgaagtcaaa cggcaacgaa
     8821 ttgtcgagat caaagaaaat caagccgaag ggctaaaatt tgataccgat ctcaccaatt
     8881 acggtgggca ggataaatct ttctccaatc aaaaagatga aattaacgaa gatgaataac
     8941 aggagggtgc gtgaaaacgt ggttcaacat tcaagccaaa gcgaatgaca ccgccgaaat
     9001 ctcaattttt gacgaaatcg gcttttgggg tgtcaccgcc caacaatttg ctaaagactt
     9061 aaaagccctt ggcaacaatt taaaacaaat caatctgcat atccactcgc ccggtggtga
     9121 tgtgtttgac ggcattgcca tttacaacct gctaaaaaat caccctgcta acaagaccgt
     9181 ctatattgac ggtcttgccg catcaatggc tagcgtaatt gcaatggcag gtgatgaaat
     9241 cattatgcct gaaaacgcta tgatgatgat ccacaaaccg tggggcattc aaggcggtga
     9301 tgcggatgat atgcgtaaat atgcggattt actggataag gttgaaagta cactgattat
     9361 ggcgtatgtc gccaaaacag gtaaatacga aaccgatttg gcagaaatgc tgaaagaaga
     9421 aacttggctc acaggcaaag agtgcgtgga gcaaggtttc gccgataagt tagccgaacc
     9481 ccttgtggcg atggcttgta tccaatccaa aaaattagag gactacacaa aaatgcctga
     9541 caaaatcaaa aatatgctat tcgcaccaca aggcaacgca ggtgcaaatc caaaacatga
     9601 acaacctcaa acaccaccac aagcgggtga aaatccgcaa aatgtggcaa aacctgatgc
     9661 aatggtggca ttagcccaac gcaatgcaac gattaaagcg acctttgccg ctttcggcac
     9721 acaatttgac ggcttgctgg cagaatgttt agctgatgtg tcaatgaccg ctgagcaagc
     9781 caaagacaag ctccttgcca aactgggcga aaacaccacc ccaagcgtac cgcaaaacca
     9841 cattcacgca ggtaacggta acatcgttgg cgacagcgtg aagcagtcgt taatggctcg
     9901 tgctggtcaa gataccgaca aaaccaacgc aagagataat gcctacaatg caatgacctt
     9961 gcgtgagttg gctcgtgcct cattggttga tcgtggcgtg ggtattgcgg gctacacccc
    10021 aatgcagatg gtcggtcttg cctttactca ttcgagctcc gacttcggtc aaatcttgat
    10081 tgatgtggct cataaatccc tactcaaagg ctgggaaacc gctaccgaaa actacgagca
    10141 gtttaccacc cgtggcactc ttactgactt ccgaccggca aaacgagtcg gtttaggtga
    10201 gtttggctac ctgccggaag tgggcgaagg tgaagaatac acctacggca caatcggtga
    10261 tgaaggtgca tctgttgcat tggcgactta cggacaactg tttagcatta cccgtcaggc
    10321 gattatcaat gacgatatgc atcttttaac taaaatccct gagaaaatgg gtgcagcagc
    10381 caaagcgact attaccaaac tggtgtttgc cttgattacc ggcaatgcga cagcccaaga
    10441 cggtaaaaag ctgtttgatg ctacacataa aaacagctta acgggtgcgg cattgaatgt
    10501 ggaaaacatt gacaaggcaa tccagttaat gaatggcttt gtaaacagcc gtggtgaacc
    10561 gctctctatt gagccagaat ttatgctgtt accaacctca ttgcatacca aagcaaaaca
    10621 gattcttggt tcgtcaagcg tggaaggtgc agacatcaac agcggtatca ttaacccgat
    10681 ccgtgatatt gtcagcccga ttaaatcgcc tcgcttacaa attgcagatc cgaaatcatg
    10741 gtacttgctc aataaagagg cgattgaagt ctcttatctg gacggggtgg atagccctta
    10801 catcgagcaa cagcacggct ttacggtgga cggtgtttcg accaaagtcc gtatcgatgc
    10861 tggtgtgaat gtgattgact accgtggtgt ggtgaaagtg accaacgctt aatttaaaca
    10921 atttaaaacc tgaccgcact tttaacagtg cggtttttta ttatccgaaa aaaggaaaaa
    10981 gagatatggc taaaaactat attcaagacg gcaataccgt gcgtttaact gcaaccaaag
    11041 cgattacttc cggcgatgtc attgtggcgg aggatttaat tgcgattgcg gtttctgatg
    11101 cggcaaaaaa tgatgcagta gttggcttaa ctaccggtgt ttttagcgta aaagctaaac
    11161 aagcagatga catcaaacaa ggtgcagtgt tgtactggtc tgaaacagag ggcgcaactc
    11221 tcaccgcagg ctcaaataaa cgacttggca ttgcgtggaa agactctggc acatcatcta
    11281 atcaagttga tgtgaaaatc aatgtctagc ccgtttgagc aggcaatagc tgccgccgat
    11341 caaactattc agcaaactat gatgagtgag tggttgattg gcggcaagcc ttaccctgca
    11401 acttttgatg aagcccccgc tatttttaac ggtttacact caaccgatga cagagctatt
    11461 cacggcacgg aacgcacact gaccctattt cgggcgagtg gctacaaacc gagattggac
    11521 gaccgagtga gcggaaatgg caagaaatac cttgttaaat cctatcactt tgtcgatcag
    11581 ttaatcgtat tgcaattgga gtaaacaatg ggttctcaag tgaccggttt aaaagaactg
    11641 caagcctccc tgaaaaaaat agctaggcaa accgtaccta aagcagccgc tcaagcaatc
    11701 cgtactgttg ggcggcaagc aatgaataag gcggttaaat cggtggcggc agagattggc
    11761 gtaaatcaaa agacaatcaa aggtagagca aaaatgacgg caaagcccac gccgtcaaga
    11821 ttgcaagcca cgattaaggt taatcgatca catatgccga tgattcgggt actagagcgc
    11881 aagtccaacc gcctgtcacc caccaaaggc agtattagag ttgggaaaca cactgtacaa
    11941 cgtggttttc gccaacgact cgccaatggg cgaacgcaca ttatgtaccg gcaaggtcgt
    12001 aagcgttacg gcattgatgt agcaaaagtg ccgttatccc aaccacttac acaagcattt
    12061 gatcgagaat tgaaaaacta tcccgaacaa gtgcaagcgg aattagctaa acaaattgcg
    12121 gggaaattat gaaaatccac acaaaaatcc gaaaagaagt ccttgaatta ttacagacta
    12181 aattgccgga aattgataat ttttataacg ggctgccaac ttttattgat attgaggagg
    12241 aacaacttgc agtatcggtt tatctcgatg atatcagtct gcaagaaata actgtttgta
    12301 ataatcaatg ggacgccaag ctcaatatta caatccatct gaaatctacc gagagtgcag
    12361 aagatgaatt agacgaatgg gcggaaaaaa ttcgtgaaat tatcgatgat tatcccgaat
    12421 ttgagcattt agagtcagtc gcgctctctc agtatcaata tgagcaagac cagaatcagc
    12481 gtacgtggca catggcgaca ttaatctttg atgttgagta ttaaacaaat aatctctata
    12541 ggagacttaa aatggcaaaa acaacaaaag tccaaggcac gaaatttaga attagcgttg
    12601 gacgtgaggc tcaaaaagca attaccgcaa ttaacttaaa tactgctact ctaacgattg
    12661 catcctcagg ctataaaaaa ggtgatgcaa tcgagcttac aggttgtggt caattagatg
    12721 gtatctaccc ggtgttatca gtaactaccg atcaggtaaa attatgcgaa gaagtgaact
    12781 ggacaggtaa agatttacca gctaattaca ccaaagccaa ggcggcacta gtgcaatact
    12841 cggagcaatt ctgcgcggta aaaaacattg aaaaatctga tgatactttg agtaccgaag
    12901 atgtaacaac ggtttgttca gagggcacag aaaccgagcc gggtgaaatt gaatttggtt
    12961 cgatcaaact cagtttcttc cacaagccta ctaccgaaat gcaaacccga ttgcgcaaac
    13021 tcttttacga caaatccacc tttgcctaca aactggaact accggataac catggcacga
    13081 cctatggcga aggctttatt gaggccggca acggtttctc gggcgaagtt aagggtaagt
    13141 atgaaggctc tgtatctatt aagccaagca aacgcgacta cttattagtt taattgcaaa
    13201 aaaaccataa aattcgaccg tttgtagaaa taacaagcgg tctttttata tcagaatttt
    13261 acaaaaggaa cgaacaatga cactgcgtga gaaactcctt gctaataaac caaaattgca
    13321 acctatcgaa atcaacggcg agacctacta cctgcgtgaa gctactgttg gtgatatgaa
    13381 caagcagatt tttgaaaccc gaagctggct cattcaacaa gctgaacaag aaaatgttga
    13441 attaccggca gaagatgatg aaacctttga tgaggctctc aaccgttttg gcgaaaaata
    13501 ccgccttgct caatcggttg cctaccgctt atgtgatgaa aacggtgtat tactgtttaa
    13561 tcctctcgac attaacgatc tgaatgccat tgccgaatta gacagtaaag tgattatcga
    13621 ctttaaccaa gccgtgtccg ccccaaaaga ctcagcgagc gaagaaagtt ccaaataacc
    13681 ctttcgctcg cactgggtaa aacacttgaa gaaatcgaac aaatgcccga acgccacttt
    13741 gccgaatatc ggcttttcta ccaagaacag cctttcggct tatggcgaga cgattaccgc
    13801 accgcccaac ttgcccactt aaccgcaatg ttcaaccgtg atccgaaagg caaagctcca
    13861 aaattagcgg agtttatgcc gttttttaat cggacagatg aggtggagga aatagaagat
    13921 gatggtgtgg cagattattt ggcgaaaagg taaagaaaac agcttgaaat tccttgctct
    13981 tggatatata tttcctcaaa gagaaggagg gaagtatgtt tgaagcacta gaccgtttta
    14041 tgattaatac gattaaaatt gcaattattg tatttttggt cgcttgcatc tttattagta
    14101 tgccgaactg gtggatagct tctatcttag tacttttccc gactgcctat ttgcttgata
    14161 aatactggtg gcgaaatacc gaaatgtatc gccgcaaaat ggataaatta gttgaagaga
    14221 tgaaaaataa tcgtcaaatc taaattaaca tcaattctag cccgctttat gcgggctttt
    14281 tatttggggt gaaaaagtga gtagctcaaa cagattaact attaccttag atgtagaaaa
    14341 ttctaagtta ctagctggat tcgcacaatc tgatacagta gcaaataagt ttgctcgcag
    14401 cttcattgtg aatatggatc aggctcagca aaaagcacgt caatttgctg atagatcgac
    14461 aaaatatcta aaaaatattg aacaagcagc aaataatctt aatagctctg tatcaaaaga
    14521 acgtttttgg caaattgcaa atcggttgca attcccgaca agtaaagtga ttagttatgc
    14581 caatagctac accgaactcg gtaataaact caaattagtc accgaaagtg aatcccaaca
    14641 cgcccgagca atggcggcgg tgtatgatat ttcgctcaaa accgcccaat ctacacaggc
    14701 aacctcttcg gtttatcaga cctttgctca aaatgcaaaa cagctcggta tttctcaaaa
    14761 cgatgtggca aaactaacgg aaacggtagc caaatcggtt gctatttccg gtgcaagttc
    14821 ggcaaccgct tcaaacgccc tagtgcaatt cagccaatcg ttgttaatgg gtaagctcaa
    14881 agcccaagaa tttaactcat tgatgaccca aacaccgtct gttattcagg cgattgccaa
    14941 agggttaggc attaccactg ccgaacttaa agcaatggtg gataacggtg agatgtctgc
    15001 tgaaaaaatg attgaggggc taaaaaaagc agagagttat gtaaacggac agtacgccaa
    15061 aacaaccact acaattagtg gagcaatgca aaatctttca actgcggctg aaaagtgggt
    15121 tggcgaaatg gatagtaccg ttggtgcgtc acagaaagcc gttgccgttc tgaatgcgtt
    15181 aaatgctcat tttgatacgt tcgctaaaac agcacttgtc gcaggtggtg catttgtgct
    15241 tttcaaaggc tatatgagtg tacgcccatt tatcgaggct agagcggcga tttatgagaa
    15301 tcgaaaagca attattgcgg aaaatcaggc tcgccaacaa acgatagcta ctcgtcagca
    15361 ggaattggtt gtactctctc aacaaaccgc cttaaaactg gaacaaacat tacaaaccta
    15421 caatcaaaat aaagccgaat tagaggcgat tgcggttaaa cagcagaaaa tcacaaaaga
    15481 acgagaagaa attgctgttg ctattcaagc ggcggcaact cgtacggaaa gattagcgtt
    15541 atctgctgaa ctgcaagcgc tagatcagaa agaaatcgct ctcgggcaac agaaaatagc
    15601 ggttgaacgc cagcaaattg caacaaaaca ggctctcaaa gtggcgtatg ctgaaaatgc
    15661 agttgctcaa agtgcaatga atgcaggtat ggtcactgca accacaacaa ccagagcgat
    15721 gaatggggtt ttagcggctg caagagctga attgaactta ctgaaagcag ctgcactgtc
    15781 taacccatta atgactcttg caatggtggc aacgactgcc ggtactgccc tttggggatt
    15841 ttttgaaagt caaaaagcag ctcgtgaaga agccctccgc tacgcggaca gcttagactc
    15901 cgttcgagcc aatatcgaaa aaatgactaa ggctcaaact gatgcagaaa tggttaaatt
    15961 gtctcgttct atcaaagaac aggaaacagc attagctagt ctgaaacaac gccaagctga
    16021 acttacacga gaaatcgagc aaggagctac ggttttagat gatgcctttg gtgccggtgt
    16081 ccgtttcgaa aaaagtgcga aagagttagc gaaagcacaa gaagagttaa agttagttac
    16141 tgctgatgtt gaaaaagcac aaaatacatt aaatgccagt ttagaagctc aagaagcctt
    16201 acaagctcac gttccaatcg ctaacctacg agaggaattt gtcaaattat atcctcacat
    16261 tgacgaaagc caaatcaaag ttgatggctt aaatattgct atcggtaatt ttaccgtcaa
    16321 atcaccggag atggttattg ccgctaataa cattgctaat gctcttggtg gcgttgccgg
    16381 agaggctatg agagcggcta ttctagtcgc taatctgtca agtatgaagc tggatgctaa
    16441 cggtgctgca attatcgatc ctaaacatct tgaaaaaatc gagcaaattg aacgtaacaa
    16501 tgcgattgct tcggctaaag gcaaagataa aatcgcattg caagtaaaag acgctctgat
    16561 taaatcaggt atgaaagagg gcgatgccgg atacgagcga ctaaaagcag catatgagca
    16621 acaatttacg ttgcaaaatg cccctaagcg cggcggaaaa ccgaagaaaa ccaaagccga
    16681 acgctctgcc gaaagttacc aaaaccaagt agcggagatg accaatcgtt tatccggctt
    16741 aaagatagat aaagaagatc tcgtaaaata tggtggcatt tctcaatatc aggaagtgcg
    16801 taaacttact gaagatattg ctctgaatgc tgaaaaatat aaaaactacg gcactgaagg
    16861 cgtggctaaa ctcaaagagc tggctgctaa aattgattct gaacaacagc ttttagacat
    16921 tgagcaattc caagtcgatc acgataaaaa gctagaggca atgcaattcg agctggattt
    16981 actgggaaaa actcgtactg aaaaagaatt gttacaattt aacaatcaat tagatttaga
    17041 ggccgagcgg ctgaaaatta atatgacgaa agagaatatt gctcttttag atcagaaaat
    17101 tgccaaaatt aaggaagaat acgagctaca tcagaaaaag caggaagaaa ctcgtgcttc
    17161 tgtaatgatg ggaataaaag aaggctggaa caatattgaa accgatgtca gcaatgtggc
    17221 ggcaaatgtt gccaatatta ctcaaaatac ctttgacggt atggcggata gcttgactaa
    17281 ttttgtgatg acgggtaaag cggattttcg tagttttgct aattccatat tatctgatct
    17341 tagcaaaatg attatcaaaa tgatgttatt taatgctatc aaacaaggtg caactatgtt
    17401 gtttggctac caaggaccga ctacaacggt aaatggtaat gctgtttatg gattaggtac
    17461 ttgggcaaca ggtggctaca caggcaatgg cggcaaatac accccagcgg gtatcgtcca
    17521 caaaggggaa tacgtcatca ccaaagaggc aacctctcgt cttggtttgg attatttgaa
    17581 ttatcttaac tatggcagac gtggttttgc ctctggcggt ggtgtcgctg taccaagagt
    17641 accgtcatca tcttatcagc cgaaatcggc tcaaagtagt atcagcgtac aggtcatcaa
    17701 taatggtgag ccggtagatg ccaaagtcag ccaaaaacag caaggcgagc aaacgcaaat
    17761 tactgttgag ttaatgcgta aaattgcccg tcaggaagcg aacggaatga ttcagaacaa
    17821 ctttagagcc ggaggagtat ttgcctaatg gaaacattac aatggtgtgt tcgcaccgat
    17881 ttagcggttg aaaatacccc tgaaataatg gaagtcaaat tcggcgatgg ttatacccaa
    17941 cgctcgccca aaggcttaaa caatttatta cgagcctata caggcacaat caaagtgaaa
    18001 aagggggaac atttagcggt ggaggcattt tttgccaaac atcgtggtgt ttcccctttt
    18061 tactttaaag atccgtacac acaacaaaac aaaaaggtag tgtgtagcag ttggcccgca
    18121 aaaatggttg gcttaaacca ttgggaattt agtgtaacct ttaaggaagt accctaatgc
    18181 ctgttagcat atccaatcaa atgaaactcg accttgccaa acttgagcaa aatgcaatgc
    18241 ttgatttgta cgaggtagat ttacgcacat taaaggataa aagcggtaat gctggctcag
    18301 tttaccgctt ttattcgggg ttaaatgaac tcaaaacaag tattgtctgg caagggcgga
    18361 cttacgatcc gtacccgatt gaggcaagtg gatttgaacg aaacagtagc ggcccaagca
    18421 atcgccctac tcttacgcta tcaaatctgt ttggcttagt tacgggtatt gctaatcagt
    18481 ttgatgagtg tatcggggcg attgttcgcc gtcatcaggt ttacgcccaa tatttagatg
    18541 ccgtgaattt tgccgggggt aatgcgaaag ctgatccaaa tcaggaaata atcagtcatt
    18601 ttgtgattga gcagcttacc agcctcaccc gagaaacggc gacctttacg ctggcattac
    18661 cgattgaaac tgataatgcc aaaatcccca gcagaattat tatggcggac acctgcactt
    18721 ggatttaccg ctcggcggaa tgtggttata ccggtaagca atattttgat gaaaaagaca
    18781 aggcaacatc agacccaaaa gccgataaat gcagccattg cctgaacggt tgtgaattgc
    18841 gaggcaatca gcgtaatttt ggtggatttg tatcggtgaa taaattgggg taatgaatgg
    18901 aattggaaca acaaataatc gactacgccc tccaacacga accgcacgaa atgtgcggct
    18961 ttgttgtttt tgacggcaat aaaaatcgat ttatcccttg cgaaaaccaa gcggaagaca
    19021 aagccaatta ctttgaaata tccgatcttg attacatcaa agcagaagaa aaaggcgaac
    19081 tggtagcggt ggtacattca catcccgagc caaacggcaa gcctatatta tctgtgcttg
    19141 atcgcaaaat gcaggtacag accggtttag attggtggct agtgcataat cggcaaatcc
    19201 ataaattccg caatgtacca catttaatcg ggcgtgagtt taaacacggc acaatggatt
    19261 gttacacgct ctaccgtgat gcctatatgc ttgccggtta cgagatggac gaattcgatc
    19321 gacaagatga ctggtggcat accgggcaaa atctttattt ggataatatc caagggcaag
    19381 gttttgagcg agtgggaacc ccacaaatcg gcgatgtgat tttaatgcaa gtaggtgctg
    19441 atgtgccgaa ccacgctgcc atttacattg gcgaacagat ggtaatccat catagcccga
    19501 accgattatc taagcgtgat ttatacgacg gctattggtt acgtcatacc cacagcattt
    19561 ggcggcataa actggcggat aagttagatt ttgacggcat attgaatgat attgctgtaa
    19621 ataactaaca aaaaatgacc gcttgtaaca aaaacaaacc ccgaagcgtt tgcagcactt
    19681 cggggttttt catatccact tacctaacta agaggacata aattaaatga atgataaacg
    19741 atttacattc aaatttctag gagttcttat ggaagcaatt aatattaccc caaaagaaat
    19801 cagaaaaaca atgtggacag ccgcaataat tctctttttg tttgcgttca tctggaaagc
    19861 ccctgaattt atcactgcta ttcgttggtg gtaactatga ttacagttaa attttacgga
    19921 cacttaagaa aatttggtac agactttaag cttgaggtaa aagacaccgc tgaggcaatt
    19981 cgtgccttat gtacacagat tagaggattg cgtgaggcat tgcgagacgg tgtttataaa
    20041 gtccgtatcg gtaagcaata tttagaccca tcagcccttg aaaaagggct tttttattgc
    20101 ttgaagaaag ggcaaaccat tcattttacc cctgttatca aaggggcgaa aagcgggggt
    20161 gttttccaag ctgtgttagg tgtagcctta attggagccg cattttttct cgggccggtc
    20221 ggttggggag ttctaggggc ttcttccgca atgatgatgg gagcaatggg ggcatcaatg
    20281 ttactaggag gagtttccca aatgctcacc aaaatgccaa aagcccccac aatgggtaat
    20341 gaaacagaaa aagaaagctc aacggctttt tcaaatttaa ataacttggt ggctcaaggc
    20401 aaacctgtgc cgttggctta tggcttaatt cggaccggct cgcttgtgat ttcacaggga
    20461 gttgagacga tgactgtaga ggtataatta tgggattatt tagtcgtaag agaaaaaatc
    20521 atactcctaa agaagcaccg gaaactggtc gctctaaaca gattgtgaat atcgtggagt
    20581 tactctgcga gggtgaaatt gaaggcttgg tagatggctt taaatcgatt tatcttgacg
    20641 gcacgaaaat ccaaaacgat gacgacagct ataattttaa taatgtgagc ggtcagttaa
    20701 atgtcggtac gcaagatcaa gaggtattag aaggttacga cagctcacaa aatgaagtga
    20761 gtgtgggtgt agaagtcaag aaaaaaaacg gtgcaatcgt ccgcaccgtt actgatgaac
    20821 gcatcagccg tttgcgttta acgttgggcg tgcggtcact attcca
//
LOCUS       DANLXK010000034        20130 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.034, whole genome shotgun sequence.
ACCESSION   DANLXK010000034 DANLXK010000000
VERSION     DANLXK010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20130
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            30..503
                     /gene="nrdG"
                     /locus_tag="PXD88_001023"
     CDS             30..503
                     /gene="nrdG"
                     /locus_tag="PXD88_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL6280612.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKKQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            500..2281
                     /gene="nrdD"
                     /locus_tag="PXD88_001024"
     CDS             500..2281
                     /gene="nrdD"
                     /locus_tag="PXD88_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL6280613.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2338..2434
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2491..3309
                     /gene="thiM"
                     /locus_tag="PXD88_001025"
     CDS             2491..3309
                     /gene="thiM"
                     /locus_tag="PXD88_001025"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL6280614.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3302..4615
                     /locus_tag="PXD88_001026"
     CDS             3302..4615
                     /locus_tag="PXD88_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280615.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4751..4847
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4915..6444
                     /gene="thiE"
                     /locus_tag="PXD88_001027"
     CDS             4915..6444
                     /gene="thiE"
                     /locus_tag="PXD88_001027"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL6280616.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6437..7609
                     /gene="cytX"
                     /locus_tag="PXD88_001028"
     CDS             6437..7609
                     /gene="cytX"
                     /locus_tag="PXD88_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL6280617.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7648..7857
                     /locus_tag="PXD88_001029"
     CDS             7648..7857
                     /locus_tag="PXD88_001029"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6280618.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7865..8041
                     /locus_tag="PXD88_001030"
     CDS             7865..8041
                     /locus_tag="PXD88_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6280619.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8082..9938)
                     /gene="sppA"
                     /locus_tag="PXD88_001031"
     CDS             complement(8082..9938)
                     /gene="sppA"
                     /locus_tag="PXD88_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL6280620.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10041..10604
                     /locus_tag="PXD88_001032"
     CDS             10041..10604
                     /locus_tag="PXD88_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL6280621.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10675..12999)
                     /locus_tag="PXD88_001033"
     CDS             complement(10675..12999)
                     /locus_tag="PXD88_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL6280622.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(12999..13553)
                     /gene="pilW"
                     /locus_tag="PXD88_001034"
     CDS             complement(12999..13553)
                     /gene="pilW"
                     /locus_tag="PXD88_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL6280623.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
     gene            13773..14024
                     /locus_tag="PXD88_001035"
     CDS             13773..14024
                     /locus_tag="PXD88_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6280624.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            14008..14355
                     /locus_tag="PXD88_001036"
     CDS             14008..14355
                     /locus_tag="PXD88_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6280625.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(14396..15556)
                     /gene="trmG/rlmN"
                     /locus_tag="PXD88_001037"
     CDS             complement(14396..15556)
                     /gene="trmG/rlmN"
                     /locus_tag="PXD88_001037"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL6280626.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            15816..16712
                     /locus_tag="PXD88_001038"
     CDS             15816..16712
                     /locus_tag="PXD88_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL6280627.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            16725..17468
                     /locus_tag="PXD88_001039"
     CDS             16725..17468
                     /locus_tag="PXD88_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL6280628.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(17525..18334)
                     /locus_tag="PXD88_001040"
     CDS             complement(17525..18334)
                     /locus_tag="PXD88_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL6280629.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(18327..19187)
                     /locus_tag="PXD88_001041"
     CDS             complement(18327..19187)
                     /locus_tag="PXD88_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL6280630.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
     gene            complement(19261..20046)
                     /locus_tag="PXD88_001042"
     CDS             complement(19261..20046)
                     /locus_tag="PXD88_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL6280631.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDPYQFKVDI"
BASE COUNT         5777 a         4505 c         4231 g         5617 t
ORIGIN      
        1 acacaatata ttgtgttaat gaattagtaa tggaaaatct cagattcagc tcggaacaaa
       61 ttgtttggca agaagtgccg aatgagacct cacttgcttt tctgattaca ggctgcccgc
      121 ttggctgtaa aggttgccat agtgcggata gctggaaagc ctgtcttggg aaagagctta
      181 gcagtgaata tctctctgaa cgcctaaaac gctaccaagg cttaattagc tgcgtattgt
      241 ttatgggcgg agaatgggaa gcagaaaaat tactgccgct gttgcaactg gcaaaaaaac
      301 aggggctaaa cacctgtctt tatagtggtt tggagcagca cgaaatcgcc gagactttat
      361 tacacgagct aacctactta aaaaccgggc gttggattgc cgaacgagga ggattggaaa
      421 gtttaaccac caaccaacgc tttactgatt tacgcaataa ccaaaatctt aaccatcttt
      481 ttattcgagg agcttcaata tgattcgctt acaaccgaca caattagacg gaaaactaca
      541 tttcattaac caatatattc aagccaaaaa tgccgcagac ggttcaaaaa tggacgccaa
      601 cgctaacgtc acgcaaaaaa acatagcgac aatggaacag gagctaatga aagatttttt
      661 tgtgcaaatc aaccgagcaa aagtgagtga aaaaattgca aaaatttttg gaaaagaaac
      721 cgcttgtgaa tatttacgtc aaatcgaagc acacgaaatt tacgtacacg atgaaaccag
      781 cctaaaaccc tactgcgttt cagtcactat gtaccctttc ttgcgtgatg gtttgactaa
      841 actcggcggc gaatccaaag ccccgaaaca tttagcctca ttctgcggtt cttttatcaa
      901 ttttgtcttt gcagtcagtt ctcagtttgc cggtgcagtc gccacggttg aatttctgac
      961 ctattttgac tattttgccc gcaaagatta cggcgataat tacttacaga ctcatcgttc
     1021 agatattgaa aaccacctgc agcaggttgt gtatagcatc aaccaaccgg cagccgctcg
     1081 tggttatcaa agcgtctttt ggaatatttc agtgtatgac aaattctatt ttgaagcgat
     1141 gtttagccgt tttgtttttc ctgattttga gaaaccaaat tgggaaacca cttcaaaatt
     1201 acaacttttc tttatgcaat ggttcaataa agagcgaagc aaagcgattc tcactttccc
     1261 tgttgtgacc gcagcaatgc ttaccgaaaa gggcaaatgt aaagatgacg agtttgccaa
     1321 tcaaatggca aaagagctat ctcaaggcaa ttcattcttt atttatcaat cagataatcc
     1381 ggattccctt gcttcttgct gccgcttgag aaatgaaatc agcgatcata gcttctccta
     1441 ttcattaggg gctggaggtg ttgcgacagg ttcaatcaat gtaattacta ttaatatgaa
     1501 ccgtttggtg caagataacc gtgatttaag cgaagaagtc agcaagatcc ataaatatca
     1561 atacgcttac cgcaaactga tggaagagta tttagctgcc ggtatgttgc cggtttacga
     1621 tgccggtttt atttcactgc ataaacaatt cctgactatt ggcattaacg gaatggcaga
     1681 agctgctgaa tcacaaggtt taaccgtagg ttacaatcca gactatattg attttgtgca
     1741 atctcggtta aaaattattt tccaagctaa ccaagcagcc ggtgaaaagt atggggtaaa
     1801 atttaatacc gaatttgtgc ctgctgaaaa tttaggggtc aaaaacgcca aatgggacaa
     1861 agaggacggc tatttcgtac cacgagattg ctacaattcc tatttctatg tggtagaaga
     1921 tgaagaaatt aatgctttgg ataaattctt actgcacggc agagagctga ttgaatggct
     1981 ggacggaggc tccgctctac acttgaattt agacgaagcc ttaacccaaa ccggatatcg
     2041 ctccttgctg gataccgccg ctaaaaccgg ctgcaattat ttttgtatta acgttaaaat
     2101 cacgatttgc aacgaatgta gccacatcga caaacgcacg ttgcacagtt gtagcaaatg
     2161 tggctccgat aatattgatt acggcactcg ggtaatcggc tatttaaaac gagtctccgc
     2221 ctttagttcc gcccgccaaa aagagcacag cttgcgtttc tatcaccgag aagcagctta
     2281 attgaaaact gcagttgtag ccctttacaa ccgctttttt agtgattata ttaaagcctc
     2341 atttagtcgg ggtgcttgcc taagggcaag ctgagaaata cccgttgaac ctgatgcagt
     2401 tagcactgac gtaggaaact aaaggcgtaa acccatctat tccccgttgg tgttggtgcg
     2461 ttgtttttca atcatattaa ggaataaacg atgaccacat cactccccta tcactcgcat
     2521 tatttgcaaa aaattcgaca aaatcgaccg cttgttcaca acattaccaa cattgttgcc
     2581 gctaattttt ctgccaacgg cttattggct cttggtgctt ctcccattat ggcagctgct
     2641 attgaggaga tggaatccgt gccggcactc agtaacgccg tggtgattaa tatcggcacg
     2701 cttatcggca aagaagtaga agcaatggag cttgctggca aaaccgccaa ccgtttaggt
     2761 attccgctca ttcttgaccc tgtcggcgtt ggagcaacac ctttccgccg tcaaacagtt
     2821 gaaaccttag tcgaccaaat tcacttcacc gccattcgtg gaaatgcggg ggaactagct
     2881 accctcgccg gtgtagaatg gcaagccaaa ggcgttgatg ccggcgaagg ctcgcataat
     2941 gtggttgaaa tcgcccaaca gattgccaaa cgttaccaaa ccttagtcgc aatcagtggt
     3001 gaaaccgatg tggtaagctc tggctcacac acagctttat tgcacaacgg cagcccgatg
     3061 ttccccaaaa ttaccgcttc aggctgttta ttaagtgcgg tatgcggggc attcttagcc
     3121 gttgccgaca aagagcacta tttcaacgca cttattgagg cttgcgccgc ttatgccgtt
     3181 gcaggcgaag tggctgctca agcactcaaa ccaactcaat acgggcaatt tgccgtcaat
     3241 ctgctggata cccttggggc attaacgcct gaaaccgttg agcaatatgt gagggttgaa
     3301 tatgtctaaa actcactcaa acccaactaa agtggcggtt gcctcaatgg tcggcacggc
     3361 gattgaatat tttgataact acatctacac gatggcagca gtgctggtgt ttaatgtgca
     3421 gttttttaat agcgatgatc cggtttccaa ccaattaatg tcgctttccg tactagctct
     3481 tgcctttttc acccgcccga tggggtcgat tttattcggg catttcggcg ataaatacgg
     3541 acgcaaacaa actctgattg cctcgctctt attaatgggc ttatctaccg tagcaatcgg
     3601 gcttttgcct aattatgccg ccattggcat ttgggcaacc gtgttactct gcctctgtag
     3661 aatcggacaa ggtttaggct taggcggcga atggggcgga gctgctctcg ttgccactga
     3721 acacgccccg aaacacaagc gggcattttt tggtattttt ccgcaaatgg gcgccccaat
     3781 cggcttgctg ttggcaaacg gagcgttcta cttggtgaat ttaatttacg gtgaacaaac
     3841 cttcttggat tgggcgtggc gaattccgtt tgtcgcttct attgtgatga tcgccattgg
     3901 gctttatatc cgaattaaga tcagcgaaag cccgattttc cttaaagcgg aacaacaagg
     3961 taaaaaccgc cataccccgc ttaaaacttt gtttagccaa cacctcaagc cttttatgat
     4021 cggcgtgctg attgccaccg ccggctatgt gttgttctac attttagttg ctttcacccc
     4081 gattttcgtc aaaagcccgg tggcagtttc tcaagcagga cacgctacag gcttaggttt
     4141 accggtaaat ctctacaccc aatatttgct gattacctcc gtgattttcg gcattgcgat
     4201 tttcttctcc ggcatttatt cagacaaaat cggacgccgt ttactgctgt tacttgccac
     4261 aggagcaacc gtagtttacg gcttaacaat gccgtttttc ctcgaaaacg gcacaccgac
     4321 ttcgatcttt attttcctca ccattggaat gatcttaatc ggcttaagct tcggcccgat
     4381 ggcagtaatt ctacccgaac tcttcccaac agaagtacgt tacacagggg cttcgcttgc
     4441 ctacaccgct gccggtattt taggagctag cgtgttcact attattgcgg tcaaaatcaa
     4501 tgaaaatttc ggcttattcg gtgtaggcgg ctatttatcg gttgcctcat tactgagctt
     4561 ctgggcattg tggcaagtcc acgaaaccaa agatttggaa ttagaggaga tataaaaaac
     4621 cactcactta acgacggggc aagttaccac cttgccccaa gatgagggaa tgcaaatttc
     4681 cctctaatag acttcacaac ggatattttg cattttttta taaaaaataa ccgcttgtaa
     4741 gctatactaa aaacgcttgt cggagtgccg taaggctgag atcgcaacag cgagatccgt
     4801 ggaacctgta ggttagtacc tgcgtaggga acaagtttta cccaaattca gattttggga
     4861 tcattaccac atctctggca agcaaaaccc taagcatatt atgaggattt tgcgatgtct
     4921 aattattcaa actctccata ccaacctaac gtcatttgga cggttgccgg ctcagattcc
     4981 tgtgccggtg ccggtctgca aaccgattta catacctttc acgattttaa cctagtgggt
     5041 tgttcagtag ttacttctgt aacggctcaa catccgcacg gtgtgctgtg tgtaacgcct
     5101 gttgatgatc acaccttccg ccaacagttt gaagccttgc tggttcaagg ctacccgaac
     5161 gcaatcaaaa tcggcttact ctgctcgcaa gcacaagtag agatcttgtg tgaatatatc
     5221 caaaaaatcc gtgcagaaag ctcgcattat tgttatgtgg tttacgaccc tgtggcagtg
     5281 gcaagcagtg ggcaggcgtt atccgacagt attttattgc agatagtgca acaaaaattg
     5341 tatccgctgg tggatttaat cactccaaac ggcactgaac tcgctttatt aagcgacaca
     5401 gaaatccaga cctttggtga tgtgaaaacc gctagccaca aactgtttgc acagggaatc
     5461 aaagccgtgt tagccaaagg tggacatttt gaatggctgg gggaaacggt aagagattat
     5521 ctgctgactg caaatgaaat ttatgccttt agtcacgccc gacagcaaag tgtgaatacc
     5581 catggcacag gttgcaccta tgcttcagcg gttggagcga tgttggcaac cggctttgat
     5641 ttagctgatg ccgtcactgt tgccaccgct tatttgcaaa aaggcttatc ggaaaaacaa
     5701 ggcagagggc aaactgcttt aagttcactt tgccacaccg gctaccctga tgatatcgct
     5761 ttcttcccac aaaccgagct gatttctgcc cctcttaaat tgccgaaaga gccttttgct
     5821 ccaacggaat atcaacttgg gctttaccct gttgtagata gcgttaaatg gcttgaacgc
     5881 ttaattcttg taggggtaaa aaccttgcaa attagaatca aaaatcgacc gcttgcagag
     5941 attgagcaag aaattgccca ttcggtcgca ctggcgaaac agcacaatgt gcgtttgttt
     6001 gtaaatgatt actggcagtt agccatgaag tatcaggctt acggcgtgca tttagggcag
     6061 gaggatttag ccaccgccga tttaaatgca attcagcaat ctgggttacg gcttggtgtt
     6121 tcaacccact gctactttga aataatgcgg gcattggcgg tgaaaccgtc ttatatcgct
     6181 tttggccacg ttttccctac tcaaaccaaa gtaatgccgt ctcaaccaca aggcttaaca
     6241 aatttagcca aatatgttgc tctcgttgca ccgcttaaca ttccaactgt ggcgattggt
     6301 ggaattaatg agcaaagcat tgaaaatgta atgcataccg gtgtcggcag tgccgcggtg
     6361 gtaagtgccg ttacccaagc aaaagattgg caacaagcgg tcaaaaactt agcaaaattt
     6421 gcaaatggag gccgtaatga atagaactct tagtacgcta aacagtggtt tgatttgggc
     6481 gggagcgggc attagtgcca gtgcaatcgt ggttggcact tggattgccc cacttggctg
     6541 gcaacaaggc ttgctggcga tagtgctagg gcatttatta ggcggcattt tgttttttgc
     6601 tgccggctta attggggcga aaaccggcaa aaatgcgatg caaacggtgc aaatttcctt
     6661 tggcagaggc tcggtgtttt tctcccttgc caatgtgcta cagcttgttg gttggacagc
     6721 cattatgatc tatacagggg cagagatcag taatgccctt agccttgcct tatgggaata
     6781 ttcggctttc tcgctttggg caatcgtgct tgggttgctg attgtgctat ggttatttac
     6841 cggctctaat caggtcggaa aattcaagtt agtgacattg atagcgatgt ttttgctcac
     6901 cttatggcta agcattaagg tattgaatgg gcaggaaaat tttcctgttt cgggtgaaat
     6961 gccgtttagc accgcagtgg aattagcaac tattatgcct ctttcgtggc tacctttggt
     7021 atcagactat accgctaaag cgaaaaagcc ttttgccgcg accctttcgg cgaccatagg
     7081 ctatttgatc accagtgcgt ggatgtatgc gttaggtctg ggtatggtgc tatttaccgg
     7141 gcaaaccgaa attgccccta tgttactaat gacaggaatg agccttatcg gcattatggt
     7201 gatgattctt tcgactgtga ctaccacgtt tcttgatgcc tattccgccg gtgtcagtgc
     7261 cggcaatatc acggcaaaat tcaaagaaac cccaaccgcc attctagtca caatcatcgg
     7321 cacgctactg gcaatcagtt taccggttac ccaatatgaa aatttcctgc tgctgatagg
     7381 ctcggtattc gccccgatga ttgccgtgca aattgcggat ttctttgtgt taaaacgcca
     7441 ccaagcacag cctaatgttg attgggttgc tgccggatta tggcttgtcg gcttcgtgct
     7501 ataccacctt ctctcttacc accaagtgca tttactactc ggcttaacca ttccagtgat
     7561 gttagtgatt tttctcagca ccatttttgt gaggaggttc acaaaataga aagataagcg
     7621 gttcaattgg agtgaaaatt tgctaaaatt gagtcgcttg ttttaaacaa tgactgggta
     7681 gtaacaccac aagctcaact tgcctaccac accattaacg gtaaagccga tgaggaacgg
     7741 ttaaatcttt tagttgcccg tgccggcgta agagtagcaa aaggctttgc cttgaataat
     7801 ggttggaatc tgcaacctta tgcggaagta aacggcattg ctgaaaaagg ccaatagtac
     7861 gaaagtgcaa gtaaaccaat atcagtttgg agttgccgaa aacaagggca gagtgcaagg
     7921 ttcacttggc ttgagtgcag gaaacggtaa tcaccgttta ggtttagagg catcagttgc
     7981 ttcaggtaag aaactgaaac aaccatttaa tgtattagta aattatcgtt atcaatggta
     8041 atttaagagg gcaggtgaaa acctgccctt aaattcaata attaatctat cttcccacaa
     8101 tttaaacagt aaagatacat ctgtttcgga tcgttaaaac gtgaaagagt ctctagctgt
     8161 tgttgcggtt gcttcaacag cggtaaatca agccaatttg ccacgctaaa ttgtaattga
     8221 gctttgaaat cacgggcaag cgtgccaaat aagctgtcat cttgctccgc aaaccattgt
     8281 aagccgaact gttcgacttt aggttggttt tccgcttcac gtttttggtt gatcaattca
     8341 gataacgcat tatatgccac attaaaattg cccaactcat caaccaatcc gtgttttaac
     8401 gcatcagttc ccagccacac ttgcccttga gccactttat ctaccacctc ttttggcatt
     8461 ttcctgccac gagaaaccag ctctaaaaaa cggtcgtagc cgttttcaat cccaatttgc
     8521 agcacttctg cctgctcttg cggtaggctt tttaaaccgg cttgttgtgc tagggcagaa
     8581 gtcgctatgc cgtcttcgct cacaccgaga tttttagcgg ttttttcaaa agttactgct
     8641 aaaccgaaaa taccgataga gccggtaagc gtattcgggc tagcaataat tttatcgctg
     8701 gtagccgcaa tccaataacc gcccgatgct gccattccgc ccattgaagc aaccaccggt
     8761 ttgccggctt gttgaaaggc ttccacttct tggcgaatca gttcagacgc cacagcactg
     8821 ccgccggggc tgttaatgcg tagaattaag ccttccacat ttttgtcatc tcgagcttgt
     8881 tgcagtaatt ttaccagcgt ctcgctgccc acattcattt cgtcactttc accgccagca
     8941 atcgcccctt ccacattcac taccgcaatt ttcggagcat tcacttctgc aaagcggtcg
     9001 tttagttcag tcatataatc taaaaattca atctggttat aactgccttc gctgtttttg
     9061 ccaaactgtg caatcagttt atcccgactt tcttggctgg acactaactg actaacccat
     9121 ttttgattta atgccagttg agcatcatct cctttagctt gtttatattt ttcaatgtaa
     9181 ttggcaggcg ataaatccag tgcttgcggt tcaatgttgc ggttttgagc tagtgttgcc
     9241 acagtttgtt gccaagtgcc gtttaaccag cctcgggcat tttgtttcgc ctcctcagac
     9301 atatcatcac gcataaacgg ctcaaccgcc gatttataag taccgacacg gaaaatatgc
     9361 ggttcagcct caattttatc gagcaaggtt ttgaaataag tgttggaata atttaagcct
     9421 tttaaatcca ccgcaccgac tttattgaga taaatttcat cagcaaagga agcaagataa
     9481 tattgttttt gcgagtagtc ttcgcccact gcaatcaccg gcttgcccga ttgtttgaag
     9541 ttgttgattt cattgccgat aaaatccaat gagctgaaat cagcactttg tagcttttgc
     9601 agatctaaca ccaagccggt aattttcggg tcatttttag cgtggctaat cgcttgcacc
     9661 acatcaaaag tcgagatttt aaacggctcg gaactaccta attccgattg caccaagcgg
     9721 tagaaatcag tgaattcttc ccgattatct gctaaataac catctaaatt taaacgtaac
     9781 gccccttgat tgaacaccgg cttttgcgtg ctgccagaag agctgataaa tgcgaccacc
     9841 ggcactaata gcaaaataaa cagaataaaa aagagattaa tgacacactc tctaatacaa
     9901 cggaagattc ggtaaaatgc ttttaaaatc gttaacatcg gaaattccta aaaataaact
     9961 cagtcggcac agtataaagc aatcgctaaa tgaagaaaat atgctattct tgaacgcaaa
    10021 aaattaacaa aggaacgctt atgcaaatct tggatttatt acaccatcgc cgttcaaata
    10081 aaaaatttgg cgataaagcc ccgaatgcag aacaactgga acaaattcta aaagccggct
    10141 tgcgagtgcc ggatcacggg cggttaaagc cttatcgctt tgtggtgatt gaaaaaagcg
    10201 gtatgccaca gtttggtgaa tgcttaaagt ctgcggtagc agaatttgat atgggcgagg
    10261 aacgcttaaa aaaagcggaa aaattagcta atcaagctcc aatgattatc ggcgtggtag
    10321 caacattaga cgacagcatc gccaaagtgc caagttggga acaaatgatt accgcaggct
    10381 gtgcaactta tgcgattcag ttagcggcaa atgcacaggg ctttgatacg gtttggatca
    10441 ccaataaatg gattaacggc tctgctcttc gctccgcttt tggttgccaa gaatctgata
    10501 aaatcattgc cttaattatg cttggctcac cggcagaggg cgagcaaatt gcattagccc
    10561 ctgaaagtga aagtttagag gggtttgtac gttatcttaa gtaagcaggt taacagataa
    10621 aagttagtaa taagggcgaa aaatatttcg cccttgcttt tatctgtttt cgccttactt
    10681 cttccagcct tttaacgcat cggcaaaggc attgttacca aaagcgttgc gattgttgct
    10741 ttgcaagcgg tcatttttct gcgtattttt gcaaatttct gctgaatttc gaccgcttgt
    10801 tggctctttt ttatcggttg gtttgtcgtc taaacgcatc gtaagggcaa tacgtttgcg
    10861 ggcagcgtcc acctcaagca ctttgacttt caccacatca ccagctttca ctaccgtgtg
    10921 cggatcttca acaaaagagt ttgagagcat tgaaatatgc accaagccat cttggtgtac
    10981 gccaatatcg acaaaagccc caaagtttgc cacattggtc actgtgccct ccaaaatcat
    11041 accggctttg aggtcggtaa tttcttccac gccgtccata aacacggcgg ttttaaactc
    11101 tccacgaggg tcacgccccg gtttttctaa ctctttgaaa atatcgttca ccgttggtaa
    11161 accaaactgc tcatccacaa aatctttggc gttgagcgag tgaattttgc tgttgttacc
    11221 cattaattct gcaagtgttg aggtagttgc ctgtaagatt ttttctacca ccgggtaagc
    11281 ttccgggtga acgcttgagg catcaagggc atttttccca ccgataattc gcataaaacc
    11341 ggcacactgt tcaaaggctt tcggccctaa acgaggcact tttttcagct ctgagcggct
    11401 ggtaaaacgg ccgttttcgt cacggaatgc cacgatattt tgtgccaatg ttttggtcat
    11461 tcccgccacc cgagccagca acggagcgga ggctgtattc agatccacgc ccactgcgtt
    11521 tacacaatct tctactaccg catcgagttt acgggcaagt tgggattggt ttacatcgtg
    11581 ttgatactgc ccaacaccaa tcgcttttgg ttcgattttc accaactcgg caagtggatc
    11641 ttgcaaacgg cgggcaatcg aaaccgctcc ccgtaatgaa acgtctaaat ttggaaactc
    11701 gttagccgca aattcagagg cagaatagac cgatgcccca gcctcactca ccaccaccgt
    11761 ttgcggttta ttctctttga tttctttaat caccgctttg gcaaaacgtt cggtttcacg
    11821 agaggccgta ccgttaccaa tcgcaatcag ttccacattg tgttgtttga ttaagctgaa
    11881 aatcgcaagc tgtgcctccg cctctcgccc agtgtgaggg taaattgtgg cggtatccag
    11941 caatttaccg gtgttatcca ccaccgccac tttcacgccg gtacgcaagc ccgggtctag
    12001 ccccattgta tttctcgcac cggcaggggc tgccattaat aatgccgaga gattgcgggc
    12061 aaacacatca atcgcctctt cttcagcttt ttcacacagg gttgccatta attcggtttc
    12121 taaatgcaga gctgctttga ttttccacgt ccaagcaatc acttgctcac gccatttatc
    12181 tgctggttga ttattaaaaa tcacgcccaa atgctcacga ataatttctt cacaatggct
    12241 ggattttgtg ccttcttctg cagtcggatc ggcatttaat gaaagtgata acaccccttc
    12301 atttcgccca cggaacatcg ccaaagcacg gtgggaaggc acgctgttaa acggctcgct
    12361 atgagcaaaa taatcacgga atttctcgcc ctcttcctct ttgccgtcaa tcactttcga
    12421 ttccaacgtg gcgtaagcgg tcaaatattg gcgaagtttt gcaagtagct cagcatcttc
    12481 gctaaaacgc tccattaaaa tatatcttgc cccgtctaat gcggccttgg tatccgcaac
    12541 gcctttttcc gcatcaacaa agtttgccgc taaggtttca ggatcttgtt tcggatcatt
    12601 ccataaactg tccgccaatg gctctaaccc tgcttcaatc gcaatttgcc ctctggtgcg
    12661 acgttttggt ttatacggca aatagagatc ttccagctcg gtcttgcttt cactgcttag
    12721 aattttggct tttaattcat cggttaattt gccttgttct tcaatcgact tcaaaatggt
    12781 ttggcggcgt tcgtccattt cacgcaaata aattaagcgg gtttcaaaat ggcgaagttg
    12841 ggtgtcgtct agcccgccgg tcacttcttt acggtaacga gcaataaatg gaatggtatt
    12901 gccctcacct aatagcgtga tggctgcaag aatttggtgt gagccaacgt tgagttcgcc
    12961 ggcaataatt tggctgattt ttagatttaa gtcagtcatt agttttcctt caataaattt
    13021 gctcgaggtt tatccaattt ctcaagctcg gtcaatgttt cggcaatttt ttgcagattc
    13081 ggctcttttt tcgcacataa caccatattt tctaagctat ccgcttggtg atagtagggt
    13141 gctttgcttt tgacagcctg ctcaaattgc tgataagcct gttgaaattg accctgttta
    13201 cataaaaaag tgccgtaatt attcagcaca tcagggcggt tttgactcaa tttcagtgcc
    13261 gtttggtagg ctttttcggc attttcagca tcacctgttt gttggtaata ataggcaagc
    13321 accgaataag ggaggtaatc tttttcatcg tgagccaagg ctttatcaat attctgctta
    13381 gcttttggga aatcattttg ctccagataa gctaaagcca aattaatacg ggcttttacc
    13441 gcttccgagc ggttaaattc gacttcagag gaagaagggg gaagagaaga acaagccgct
    13501 aataaaaaaa tcagaataca agcggtcatt tttggaaaaa attttgcaaa cataacgttc
    13561 tcctacaaca aagggcttaa ttttactgtt ccatcctcgc taagactagc gattttttgc
    13621 gaagaagaaa aatttttcgt tttcattttt cgacgcagat cgcaaaaata ataatggggt
    13681 gttgtgctag ggtaaatggt aggaatacac tctctattta atataagaat ttcattgaaa
    13741 aaacttataa aacttataaa atagaggcaa aaatgaaaat agtggtattc cagcgtaaag
    13801 ccttaaagca attacgaaaa atcccaactg gtgcagaaat tcgccgaaaa tgtgatgatt
    13861 tagcttactt tccctactgt gccaatatta aggcattaac aaatcatcaa tatgattatc
    13921 gctttcgggt cggaaattac cgtatttttt tcaatattga aggcgaaacg atgaatattg
    13981 tgtctatcga agaggttaaa aaacgagatg aaagaactta ctaatattca atatttaaat
    14041 aatgaagaag gaaaacctgc ctttgccgta cttccgatag caacacttga atggcttaag
    14101 cagaaagcaa atattaaaac cgcaatagag accggtattc catctgctgt tgctggaatt
    14161 gcattagata ataactactc agctctgcgt gcttggcggg aatatttagg tttaactcaa
    14221 gaagaggtgg cacaacgctt ggggatttcg caatcagctt atagccaaca cgaaaatgca
    14281 aaaaatctac gaaaaacgac ccgcataaaa attgcctatg cgttgggttt aaatgaagag
    14341 caattagatt tctaataaca aaaaggcagg aacctctgcc ttttcactat tcagattaat
    14401 gggttttaac cgcaatacct tgcccgaatt tacgtttttc aagggtgcgt ttggtgcggt
    14461 caatcacatc gccagcaagc tgtccgcaag cggcatcaat atcatcacct cgtgttttac
    14521 gcactgttac cgtgaaaccg tactccatca aggttttttg gaaacgatct acccgagagt
    14581 tagagctttt accataagga gcttctggga acgggttcca cggaatcaag ttaattttac
    14641 acggcgtgtt ttttaatact tcagcaagtt ggtgggcgtg gtttgtgctg tcattgacat
    14701 gatctaacat cacatattca atcgtgacct tgccgtggtt ggcgttagaa acttcacggt
    14761 atttattcac cgaatccatc aacattttga tgttgtactt tttattaatc ggcactaatt
    14821 catcacgcag ttcatcgttc ggagcgtgaa gtgaaattgc caacgccaca tcaatttgct
    14881 cacgcatttt gtctaatgcc ggcaccacac ccgaagtgga aagcgtgaca cgacgtttag
    14941 ataagccgta agcaaaatca tctaacatga tttccattgc cggaatcacg ttattcatat
    15001 tcagcaatgg ttcacccatt cccatcatga ccacattggt aatcgggcga acaccggtca
    15061 cgccaaaatt gccgataatt ttagaagcac gccacacttg cccgataatt tccgccacgc
    15121 ttaagttacg gttaaagcct tgttgagcgg ttgagcagaa ggtacaagcc aaggcacagc
    15181 ctacttgtga agaaacacac agggttgcac ggtcatcttc aggaatatat accgtctcga
    15241 tttgctgatc gcccacttgc attgcccatt taatcgtacc gtctgcagaa cgttgttcta
    15301 ccgccacttc aggggcttta atttcggcaa tacgctttaa tttttcacgc aatactttat
    15361 tgatattgct catattatcg aaattttctt cgccaaaatg gtagatccat ttcattagct
    15421 ggtcggcacg gaaaggtttt tcccccattt ctgcaaacag ttctcgcatt tcttgacgat
    15481 taagatttaa taaattgatt ttttcttttg gttgttcagc agacccacag cctgcattgg
    15541 taatcagttc tgacataaag ttgaaagcct cgttattaca cggattacgg caaaaggtta
    15601 gggcaaatgc ccttattttg cgattggatt ttaaagcgtg caattttact ggctcttgag
    15661 ggattaggct agtaattttt aatcaaaaga gttgaattgc ctgagtaaac ttatcaagaa
    15721 taaccttata aaaacaagac tatttacatc attcccaatg ttctatagaa tagctttcga
    15781 taattctcat tctcaataac aaaaggaggc taaaaatgaa actatcaaca attaaaaaag
    15841 cattggtatt aacctttggt ttaagtgcag cgatggcaat ggcagagccg tttaaagtag
    15901 ttaccacttt taccgtgatt caagatattg cacaaaatgt cgccggcgat aaagccactg
    15961 tggaatccat tactaaaccg ggtgctgaaa ttcacgatta tcaaccaaca ccaaaagaca
    16021 ttgtaaaagc tcaaaaggca gacttagtgt tatggaacgg tatgaacctt gagcgttggt
    16081 ttgaacgttt ctttgaaaat gtaaaaggta aaccggcggt tgtcgtcacc gaaggcatca
    16141 ccccaatgcc gattaccgaa ggtgaatata aaaatctacc aaatccgcac gcttggatgt
    16201 ccaccgataa cgcattaatt tacattgaaa atattcgtgc ggctttagta aaatatgacc
    16261 cacaaaacgc agacacctat aatgccaatg caaaagccta tgctgaaaaa gtaaaaggta
    16321 ttgctgagcc actccgccaa cgtttagctt ttattcctga gcagcaacgt tggttagtaa
    16381 ccagtgaagg ggcatttagc tatttagcga aagactacaa cttaaaagaa ctttatttat
    16441 gggcaatcaa tgcggaagag caaggttcgc caaaacaagt gaaaaaagtg attgatggtg
    16501 taaaagccaa caaaatccct gttgtgttta gcgaaagtac cgtttccgac aaaccggcaa
    16561 aacaagtggc gaaagaaacc ggtgcattat acggtggcgt aatttatgtg gattcacttt
    16621 cagagaaaga tggtccggtt ccaacctatt tagatttgct taaagtgact atcggcacca
    16681 ttgtcgaagg gttcgaacga agcaaaaaat aataagattt agcaatgaca actgtttcag
    16741 cctccatttc cgtcgaaaat ttatcggtcc gttataataa cggacatatc gctttgcaag
    16801 atgtctcgtt tcatctggaa aacggcacaa tttgtgcatt aatcggcgtg aatggaggtg
    16861 gaaaatccac tctgtttaaa agtttaatgg ggctggttaa gccattaacc ggctctgtta
    16921 agctgagtca gctcccgatt gctaaagccc tcaaacaaaa tttggtttcc tatgtgccac
    16981 aaagtgaaga agtggactgg caatttccag tttcggttta cgatgtggta atgatggggc
    17041 gatacggcta tatgaatttt ctacgccgcc caagccaaac cgataagctc aaagtagagc
    17101 aagcaatgca acgccttgat gttttacatc tcaaagacag gcaaatcggc gaactttccg
    17161 gcgggcaaaa aaaacgggta tttttagccc gtgccttagc tcaagaaagt aaaatcatct
    17221 tacttgatga gcctttcacc ggtgtggatg ttaaaaccga aaatgcgatt gttgagctac
    17281 ttaaacagct taaaaatgag gggcatttga ttttagtttc cacccacaac cttgccagcg
    17341 taccaagctt ttgcgatcag gttttgatgg tcaatcgcac gctactggca aaaggtaaaa
    17401 cggaagaaat ctttaataat caaaatttag aacgggtgtt cggcggttta ttgcattatc
    17461 aaaagtagtg tttcagcaac aaatcacaaa caaataggga ggcaaatgcc tccctatttt
    17521 tgtatcaatg aatcttagaa tatgcaaaac tgaggaaaaa aatggccgct tgcacgagaa
    17581 taatcgtcgg ccctgttgcg gcatcaatat ggtagctaag caacgtgccg aataccgatg
    17641 aaaatatcgc aacgcctaag gcaatcagta acatactatc aaaccgctta gtcagcaggt
    17701 aagcagtgat ccccggggta atcaacattg ccaccactaa aatcacgccc accacttgca
    17761 ttgcactgat aatagttaaa gcaagcaagg aaagtaaacc ataatgcaat aatctaaccg
    17821 gtaagcctgc tactttggct tgattaacat caaagcaata gagcaagaag tctttgcgtt
    17881 tcgccaccat caccacaaag gtaaagaggc ttatgagtaa agtctgaagc aaatcgcttt
    17941 tggttacgcc taatagatta ccaaataaaa tatgggttaa atgctcaccg gtattaaagg
    18001 cggtaaacag caagatccca aaggcaaaca tacctgaaaa cacaatcccc attaccgtgt
    18061 cttctttcaa gcgactattt tcttttaaat agcccaccga taaggcacag cctaatcctg
    18121 aaaaaaacgc ccctattgag agtggtaacc cggcaagtga ggaaatcacc acaccgggca
    18181 gaacagcgtg cgaaattgca tcgcccatta aagaccagcc tttcagcacc agatagcaag
    18241 ataaaaccgc actcacgcca gcaactaaaa ttgcggtaat taacgcaatt tgcataaatt
    18301 caaattgcaa cggctctaaa atccaattaa gcattttgaa cctccacacg gtgcaatttc
    18361 cgcttttgag taatcaagcc atatttagga gcaaagcaga atgcgaataa gaaaattaag
    18421 gtttgtaagc acacaattac cgcaccggtt gcaccgtcta aaaagtagct taaatatgcc
    18481 ccaatccctg atgtcagcgt gccgataagc attgcgatca gcactaatct agggaaacgg
    18541 tcggtaagta aataagcagt tgctcccggc gtgacgacca tcgcaataac caaaattgcc
    18601 ccaaccgttt gcagagccac tactacacag gcacttaata aggtaaagaa aatcacttta
    18661 tagcgtaatg gcgaaagccc gactgacaat gcgtggtgtt cgtcaaaaaa gacgagtagc
    18721 aaatccttcc aaaataggat taaacccagt aacgaaatcg caataatcag taccacctgc
    18781 cacaagtcat catcagcaat gcctaaaata tttcccatta caatcgaatt aacatcaacc
    18841 gatgttggat tgagggaaac aataaacata ccaagcgcaa aaaaagtcgt gaaaataaag
    18901 ccgataaccg catcttcttt aattttcgtc aggcttttta cccaaagaat cgataatgcc
    18961 gccaaaatcc cggaaaaaaa cgcaccaaag gcgtagggca attttagtgc ataagcgatg
    19021 gcaacacctg gcactacagc gtgtgataag gcatcaccaa tcaaagacca gccttttaac
    19081 atcaaaaagg cggaaagaaa agcacaaact aaccccacgc ccatactgac aaaaatcgct
    19141 ttttgcatat agttgtaggt aaaaggctct aataaaagat caagcataaa atcctaacaa
    19201 gttgttgata atagttcgca tatactatca tataaactcc ttttcttgta tggattaaac
    19261 ttaaatatct actttaaatt gataaggatc aggatagtaa taacgaaaac caagctcttg
    19321 gcaaattttg tctgctttta tcagccttac aagcggttga ttttcttcag aaaaatgcaa
    19381 atccgctaac ccaaaacgtt ttgccatttc actataataa tctttacggc ttgggtgctg
    19441 ttcggcacat aaatgaaaaa tacgctgccc gttcggctgc tccaacagca atgaaatggc
    19501 tgcaatacag tcctctaaat gcactaaatt gaccggctgc cctgctccac tcaagttctg
    19561 ttttcccgcc aaataaaaaa ccgggtgccg ttttttgccc accaagccag ctaaacgcaa
    19621 aatatcacaa tgaattggct ggctcagcaa ccaattttcc atttttacta ataggttagc
    19681 agaatcaacc actgcatttt catcaaaaac gcccgatttc attggcaaaa ccgaagtcga
    19741 gctggtgaaa accagatgtt tcaagccctt ttctattgca agcgaaacta atgtttgaat
    19801 accgcaaccg taattttcag ggcgaatttg gctaaggggc aaggcaatca ctaacgcatc
    19861 agcagcaagt aattgctcga tttcgcttgt cactgctaac gcatttaaat ctagaggata
    19921 acattctatc gctaattctc cgaccgttcg cttagtacct gcaacacgcc agcccttatt
    19981 ttgtaatgct tcagctaaag gtagtccgag ccagccaagc cctaaaatgg taattttttt
    20041 catcatttac gtttctcaag attaaaattg gaatgagggg aaattcaggt acaaaaaaag
    20101 cacctcgtgg tgctatctat tttatttcta
//
LOCUS       DANLXK010000035        20085 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.035, whole genome shotgun sequence.
ACCESSION   DANLXK010000035 DANLXK010000000
VERSION     DANLXK010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20085
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            180..428
                     /gene="rpsP"
                     /locus_tag="PXD88_001043"
     CDS             180..428
                     /gene="rpsP"
                     /locus_tag="PXD88_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL6280632.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            461..988
                     /gene="rimM"
                     /locus_tag="PXD88_001044"
     CDS             461..988
                     /gene="rimM"
                     /locus_tag="PXD88_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL6280633.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            1033..1788
                     /gene="trmD"
                     /locus_tag="PXD88_001045"
     CDS             1033..1788
                     /gene="trmD"
                     /locus_tag="PXD88_001045"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL6280634.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            1815..2165
                     /gene="rplS"
                     /locus_tag="PXD88_001046"
     CDS             1815..2165
                     /gene="rplS"
                     /locus_tag="PXD88_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL6280635.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            2321..2677
                     /locus_tag="PXD88_001047"
     CDS             2321..2677
                     /locus_tag="PXD88_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280636.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            2679..3002
                     /locus_tag="PXD88_001048"
     CDS             2679..3002
                     /locus_tag="PXD88_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280637.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(3012..3344)
                     /locus_tag="PXD88_001049"
     CDS             complement(3012..3344)
                     /locus_tag="PXD88_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6280638.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(3437..4633)
                     /locus_tag="PXD88_001050"
     CDS             complement(3437..4633)
                     /locus_tag="PXD88_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL6280639.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(4782..6125)
                     /gene="accC"
                     /locus_tag="PXD88_001051"
     CDS             complement(4782..6125)
                     /gene="accC"
                     /locus_tag="PXD88_001051"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL6280640.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(6197..6664)
                     /locus_tag="PXD88_001052"
     CDS             complement(6197..6664)
                     /locus_tag="PXD88_001052"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL6280641.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRIESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(6917..7699)
                     /locus_tag="PXD88_001053"
     CDS             complement(6917..7699)
                     /locus_tag="PXD88_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL6280642.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(7709..8146)
                     /gene="aroQ"
                     /locus_tag="PXD88_001054"
     CDS             complement(7709..8146)
                     /gene="aroQ"
                     /locus_tag="PXD88_001054"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL6280643.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(8232..8600)
                     /locus_tag="PXD88_001055"
     CDS             complement(8232..8600)
                     /locus_tag="PXD88_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6280644.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(8660..9484)
                     /gene="dapD"
                     /locus_tag="PXD88_001056"
     CDS             complement(8660..9484)
                     /gene="dapD"
                     /locus_tag="PXD88_001056"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL6280645.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            9632..10294
                     /locus_tag="PXD88_001057"
     CDS             9632..10294
                     /locus_tag="PXD88_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL6280646.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            10291..11043
                     /locus_tag="PXD88_001058"
     CDS             10291..11043
                     /locus_tag="PXD88_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6280647.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            11134..11970
                     /gene="ftsN"
                     /locus_tag="PXD88_001059"
     CDS             11134..11970
                     /gene="ftsN"
                     /locus_tag="PXD88_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL6280648.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(12012..13193)
                     /locus_tag="PXD88_001060"
     CDS             complement(12012..13193)
                     /locus_tag="PXD88_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL6280649.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            13300..13638
                     /locus_tag="PXD88_001061"
     CDS             13300..13638
                     /locus_tag="PXD88_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280650.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            13770..14639
                     /locus_tag="PXD88_001062"
     CDS             13770..14639
                     /locus_tag="PXD88_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL6280651.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            14731..16542
                     /locus_tag="PXD88_001063"
     CDS             14731..16542
                     /locus_tag="PXD88_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280652.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
     gene            16551..19331
                     /locus_tag="PXD88_001064"
     CDS             16551..19331
                     /locus_tag="PXD88_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL6280653.1"
                     /translation="MNAEQRVIVTPTFWGKFFGKIKSVELQQNKVIVTDKKNNITEHD
                     LGKTFDFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVVASNIKVKVK
                     EGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESLVKKIQYISS
                     LFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAG
                     TGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREANLDLENSPS
                     ISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDNLAKFIQLAY
                     QPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVEYEYEPRYVS
                     KRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRKRELHAEHNT
                     TLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFKENKNRYLKC
                     LQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANEIDFDDMILL
                     ATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVGDDWQSIYRF
                     SGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKV
                     ADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSV
                     IKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLPMLDSFPHSE
                     ERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQERYRTIFKCNE
                     CSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQFWGCSGYGIK
                     GDQCTNTRKYFM"
     gene            19353..>20085
                     /locus_tag="PXD88_001065"
     CDS             19353..>20085
                     /locus_tag="PXD88_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6280654.1"
                     /translation="MDLFESKKQLIELIKKYDSDKEIYSSSSYNESQLRTDFLDPFFG
                     LLGWDITNSKNKLTSEREVIVEEPLKEKVSENVKKPDYTFRFNSQRKFFVEAKKPSVK
                     IKTDPLPAHQVRRYGFTAKLSISVLSNFEYLAIYDCSEIVDVQQDALYARVRLYHYTE
                     YVKFFDEIMNLLGRESVYSGHFDNEWREISQKIENSKQTVDELFFEQINKWRHVLGSE
                     LLKINPCISNNELNDAVQDYINSIIF"
BASE COUNT         6090 a         4017 c         4244 g         5734 t
ORIGIN      
        1 tttgtataaa aaaacgctaa atgtatcttt ctttaaaaga gtcatatcaa tgaatctccc
       61 ttgtctttcc gcaaaaaatc tgtataattt gaccgcttgt tttctctttt gaaacaagtt
      121 cgttaccctc acctcgaacg agggtttatt ttttactatc aacatttaga ggaaaggtta
      181 tggtaaccat tcgtttaact cgtggcggag ctaaaaaacg cccattttac caaatcgtgg
      241 tagtggacag ccgttcacct cgtgatggtc gctttatcga gcgtatcggt ttcttcaacc
      301 cattagcagc aggtcaagct gagcgtttac gcttagatgt ggctaaagta gatgcttggg
      361 ttgctaaagg tgctgattta tcagaccgtg ttgcttcttt agtaaaagaa gctcgcaaag
      421 cagcttaatt tttaagccaa aattaaataa gtaggtgagt atgagcgaac aaaagatcga
      481 agttgtcgga aaattaggtt caacctatgg tatccgtggt tggttgcgtc tctattcatc
      541 gacagaacaa actgagagca ttttcgacta ccagccgtgg tttttaaaaa ttaaaggtca
      601 gtggcagcag gtcgaattag aaagctggcg ttatcatagc aatgatttga ttgttaaatt
      661 gaaaggcact gaagaccgtg aagccgcaca gttattaacc aacgctgaaa ttggcgtgga
      721 tttgtctgtg tttcctgaat tggaagaggg agattactat tggcacgatt tgatcggctg
      781 ttcggtagta aacttagagg gctacacaat gggaacagtt gccgaaatga tggaaacagg
      841 ttcaaatgat gtgcttgtgg tgcgtaataa cggcaaagat gctttcggta aacaagaacg
      901 attaattccg tttttgtatg aacaagtagt taaaagagta gatctcgcca ccaaaaccat
      961 tacggtggag tgggacgctg gtttctaacc tcaggtatgc ggtgagcttt ggaaaacatt
     1021 taaggcgtta aaatgtggat tggtattatt tcactgtttc ctgaaatgtt taaagcaatt
     1081 accgatttcg gggtgacagg acgtgcagtt aaacaaaatc tactgcaagt tgaatgttgg
     1141 aatcctcgtg attttacatt cgataaacat aaaactgtag atgatcgccc ttatggcggt
     1201 ggtccgggaa tgttgatgat ggtgcaacct ttgcgtgatg cgattcacgc agcgaaaaag
     1261 gcggcattag cagtagaagg cggtgaagct aaagtgattt atctttcgcc gcaaggacgt
     1321 aaactcgatc aaaacggtgt gcaaacactg gcttcaaatc agaaactgat tttaatttgt
     1381 ggacgatatg aaggcgtgga cgagcgattg attcaaacag aagttgatga agaatggtca
     1441 atcggtgatt acgttctcac agggggggaa ttacctgcaa tgacattaat tgatgcagtt
     1501 gcaaggtttg ttcccggggt attaggcaaa caggcttccg cgttagagga ttctttcgca
     1561 gagggattat tagattgccc acattatacc cgccctgaag tattagacgg tatgcctgtt
     1621 ccggaagtgc tgatgtctgg acaccatgaa caaattcgta aatggcggtt ggaacaatcg
     1681 ctggaacgaa cgtggttaag acgccctgag ctattggata gcctagctct gactgacgaa
     1741 cagcgtgtgt tgttagctaa aattaaaaaa cagcacaaaa tcagttaatt ctaggattat
     1801 agaaggtttt taaaatgagt aacatcatca aacaacttga acaagaacag ttaaaacaag
     1861 acttacctag cttccgtccg ggtgacacat tagaagttaa ggtatgggta gtagaaggta
     1921 gtaaaaaacg tttgcaagcg ttcgaaggcg tggttattgc aattcgtaac cgtggcttgc
     1981 actctgcatt cactctacgt aaagtttcaa atggcgtagg cgttgagcgt gtattccaaa
     2041 ctcactcacc tgtaattgac agcatttctg ttaaacgtaa aggtgcggta cgtaaagcta
     2101 aactttacta cttacgtgag cgttctggta aatctgcacg tatcaaagag cgtcttggcg
     2161 actaattgct acaaaacagt gaaatgcaca aaagccttga ggaaactcaa ggcttttgct
     2221 ttttgtactt acaagcagtt atttttcctc aatgatttac aaatcttgct ttcttttttg
     2281 ttataatgtt aacaagataa cattaatgat aggtgtcgat atgaaacaat taagtattag
     2341 attgccagac gatgaattta cttttattaa aacatttgct tctgctcata aactgacttt
     2401 acaaaatttt gtgatgtccg caatccaagc taaagttgca gaaatgtctg ctaaaaataa
     2461 aatatctgaa gaaagtaaca ttcatcaacc tctttctaaa gatgaaaaaa taatgctaaa
     2521 tgaggcaaaa gtattttatt ctgctcgttc gcatttaaag gcagaaaatg tgattcttcc
     2581 gagtgatttt atggagcaaa ttaaatcagg ctgtggagca gaaaaaatgg cagaaatgat
     2641 gggatatacc aaagaagatt gggagtcaat gaagtaatat ggggcagatt acatttagta
     2701 atattttcac aaaagtgatt tttgagaatg tgctttctgc ttcaactaaa gagaaaataa
     2761 aacaaatgct ttttcagtct gtggttgcat tacctcctct ccattcagaa agaaaaatga
     2821 ttttacagtt gaaaaagcaa aaaattacca ttttttatca agttattgag gaacaatctg
     2881 tgcaaatcct cgcttatcaa tttggtggaa ctgataaatt gacaggtgtg tctaaagctc
     2941 actttaaaac actagatgcc atttttcaaa tgacggatga agagaaagaa ggaaaattct
     3001 aatgtaagcg gttatttttc catatttttt tgcaaataac gtttctcaaa ttttgcttga
     3061 tggcgttcaa gcacttccgt catcgaaatg ccatatttat cggctaatac aaaaagatta
     3121 tccatcacat cgcctaactc ttcgattaag ttatctcgtt tttgctgttg tgaagcttcg
     3181 gtttcgtccg gtcgttcacg cccgatttca atcgctctta ctgcacaagc cacttcgccg
     3241 atttcttctg ctagataagt cacccgcata aaagggcttc gttcatacca accttgttgt
     3301 tggtaaaact ggcgaaccca ttgttgatat tgttcaattt gcattttatt tctgattcaa
     3361 aaagtaggga cgaaaaattt ttcgcccttt tataagaaaa tgtatcaggg caaatgatga
     3421 tttgccccta ggagtgttac tctgcctcag agagaataat ccagccacta tccagccagt
     3481 cgcaaatggt gtctagcatt agctccagct ccgcttggtc ttgcactttg gaggcaagtt
     3541 tgttccacga aatcgaatct ccattggcga tacgaatcag taatgccatt tctgcttcgt
     3601 ttaactcatc aatccactcg ccatttacat aaacccgttg agggttctcg gtgtagagga
     3661 tttttacatt tgcatcttgc tgtaaccagc cgccggcttc gagaatttct tgcacttcgt
     3721 cagggtaata ttcattgtca gtttgcaata attcataacg gcgggagctt gccgcagtgg
     3781 caacactgtg agtgagtaac tcatcgaact gttcggaatt ttggagcaag tcgattaact
     3841 gatgtttaaa cattttcacc attttcggat caagcaacgc attcggctgt tcattcggcg
     3901 ttaagcggaa cggaagatga aattccgatg aattaatgtt gtcggcttgt tgttcgatgg
     3961 ttttgcagag attttccagt aaatcggtcg catttggata acgtaaacca aaagagaaag
     4021 ttaaaccttg ctcgctttcg gaaacaccat agtgagccat tcgagacggc acataaagca
     4081 catcacccgg gttcattacc tcgtccatta ccagttcgcc catatcatca aaaatgcgga
     4141 tcggttggtt tggtttgaat tcggtgcttg gatcgcacca tttgcctaat tgccaacgac
     4201 gttgcccata gccttgcacc aagaacacat cgtactcatc ataatgtttg ccgacagtgc
     4261 cgttgagcgg tgagcaagaa accataatgt catcacgttg ccattgcggg ataaaaccaa
     4321 aagcctgcca aagctcgcct agctcaggag accattgctc gaggttttgc accattacag
     4381 accattgtac aggtaactct tccaaatctt cctcaacaag cgggctggat ttaacagacc
     4441 atttctcgtt ttcgcattga atcaggcgtg cagtgacttc ttcctctaat gccagttcta
     4501 aaatatcttc cggctcaaac aatccgacaa tttggggtaa gccgttacga attaatagcg
     4561 gtcgtttttg ccaatattct cgcaaaaagg tttcagggct gatattttca ggtaagcaga
     4621 atggaatgtt cataatggct ccttgctacg tgcttctttg agattactga tattctaccc
     4681 gagaaatcag gaaaaacggg aaatttttta tgatttagcg acatcattca cattttgaag
     4741 aggaaataat gaaaaaggcg aacattgttc gcctttgaaa tttattttaa accgagtttt
     4801 ttctcgagat agtggatatt ggtgccacct ttgcggaatt ctttatccgc aagaatttga
     4861 gtatgtaaag gaatattggt tttaatgcct tccacaatgg tttcggaaag ggcattttcc
     4921 atccggcgaa tcgcaatatc acgattttca gcaaaggtaa tcaatttacc aatcattgaa
     4981 tcgtaatgtg gcggcacgct atagcctgag taaatatgtg aatcccaacg cacacctaaa
     5041 ccacccggaa cgtgtaaacg ggtaatttta cccggcgatg gcaagaaggt gtttggatct
     5101 tctgcgttga tacggcactc aatggcgtga cctttcactt taatatcatc ttgtgtgatc
     5161 gaaagtggta agccggctgc cacacgcagt tgctctttta ccaagtccac accggtaatc
     5221 atttcggtta cagggtgttc tacctgtaag cgggtgttca tttcaatgaa gtaaaactcg
     5281 ccgttttcat ataagaactc aaaagtacct gcaccacggt agccaatttc acggcaggca
     5341 ttggcacaac gctccccaat aaattgacgc aattcaggtg taataccctg agcaggtgct
     5401 tcttccacca ctttttggtg gcgacgttgc attgaacagt cacgctctgc taaataaacc
     5461 gcattaccgt gagtatcggc aagtacttgg atttcaatat ggcgtggatt ttctaaatat
     5521 ttctccatat acaccatatc gttattaaat gccgctttcg cttcggcttt cgtcattgcg
     5581 atagattctt ccaaatcttt ctcgtgatga accacacgca taccacgacc gccaccacca
     5641 cctgatgctt tgatgatcac cgggtagccg atacgtttag cgatttcttt atttttcttc
     5701 ggatcgttac caaccggacc gtcagaaccc ggtacgcaag gcacgccggc ttttttcatt
     5761 gcattgatag cagagacttt atcgcccatt aagcgaatca catcagccgt tggaccaata
     5821 aagataaagc ctgatttctc aacttgttcg gcaaagtttg cgttttcaga taagaaaccg
     5881 tagcccggat gaatagcatc ggcattcgtt acttcggcag cggcaataat catcgggata
     5941 tttaaatagc tttttaccga tggagcagga ccgatacaaa tggtttcatc ggctaattta
     6001 acgtgtttta attcacggtc ggcagttgaa tgcactgcaa ccgttttaat gcccaattct
     6061 ttacaagcac gcaaaatacg cagggcaatt tcaccacggt ttgcgataac aactttttct
     6121 aacataggga aattccttgt gttctagaaa atgtagggcg tgttgcacac gcccgttgga
     6181 taatttaagg aagagcttat tcaatgatga ataatttttg gtcgaattct accggttcgc
     6241 catcattaac taagatttct tttaccacac cggctttgtc tgactcgata cggttcatca
     6301 ttttcattgc ttctacaata cataacgtat caccgatttt cacggtttga cccacttcaa
     6361 cgaacggttt tgcatctggg cttgggctac ggtagaaagt ccccaccatt ggtgaaagca
     6421 ctgcgtggcc actcgtttct gcggcttttg gtgcttcagc cggagctgca acaggtactg
     6481 tcgaagctac ttgaggtgcc gctggtgcaa caacaggagc tgctgcatat tgaactgcag
     6541 ctggtgcaac agctggagca gcacggctaa tacgcaccgt accttcttct tcagacactt
     6601 ctaactcggt aatgccagat tcttcaacta attcaataag ttttttgatt ttgcgaatat
     6661 ccataataag attccgtatg tgattaaata aaataaaaaa gagaactcca catttggggt
     6721 ataaattcaa atgtagagtt aaaaaatgct gggcgtagaa tacctgaatt tcgctaattt
     6781 tgcgaataaa atctgataat tttggcgaaa atggacgatt ttagcattca tcgtaccagt
     6841 taggattttt ggaaaatggt gactcacaag cgattgaaaa ttgccaattt tttgtaaaaa
     6901 acaaccgctt gtcagattat ttcaataaat cttcattttt cttgtaattc cacttgctac
     6961 cgggcttgtc gatatactga aaatattcgt tggtaaaagt accttgagca caagttactt
     7021 tgtctcggcg gaaatttact tctttatcac caatggcatt atttagggtg tcaggaccgg
     7081 tcataacaaa cacgccacct tcaatccgac gattctcaat attgctgata atcagctcaa
     7141 gggtgtcttt tagaatccaa tttccagctt ccgaagccaa gaaaaagttg gtgtatttat
     7201 cacggcgttt aattaacact tcgctatcat tttcgccaat aattttagag agtgggtaaa
     7261 ccaaatgccc gtcaatatca atataaatgc caccttctcg gagcaaagta aaaattcgcc
     7321 aaaaatcagc ttgtgccgca ccatcggtta atttgctata ggcgttaaag gtgcgttcat
     7381 cggcgttggc cttgatgtat gcctctcgtt cttctgtgct aacgtagcga taatcgtagc
     7441 tcaatgacat taggcggtta aacagataat tcgcatacat tggcaaggtg actttgttag
     7501 aataattcgt ttgccaaatg gttttggtaa ttttgctcgg aatgcttgat tggatttttg
     7561 ccgggctata ttccggaatg gtgaaacgtt ttttcggaaa aagtgcatgg aacggataac
     7621 tcaatatttt gacgatatta ccgaataaac ggaagactcc gttacagatc acaataaatt
     7681 gttcattttt aacagccatt ttattacctt atgcttttaa gtgtgaaatt gcaaaatcca
     7741 acgcatattc atagcctttt gcccctaaac cgcaaataac gccttttgca atatcactta
     7801 gataggagtg atggcgaaaa ggttcacggc tatgaacgtt agacaaatgc acctcaacaa
     7861 acggaatcga cacactcaat aacgcatcac gaattgccac gctggtgtga gtaaatgccc
     7921 cggggttaat aataataaaa tcggtatgct gaaaggcttg gtgaatacgg ttgataatcg
     7981 gctcttcacc gttggcttga aagctctcca gctcaacatc ttgggccgca gccaattttt
     8041 ttaagtggtt ttcaatatcc gccaaagttt gcgaaccgta aatttgtggc tcacgtttgc
     8101 ccaacatatt taaattcggg ccgttaagga gaaggatttt tttcatattt acttattcaa
     8161 cttgtaattc ataattaagc cattcacggt tttctttcgc ccccaagcgt tgataaaaac
     8221 gaataccacc gtcattccaa ggattttatt gtcttacaat gatgtgcctt cgcctcattt
     8281 ttcaaggctt gcattaacgc ctctcccact ttctgattcc gagcagtttc atcaacataa
     8341 agctctttca tataaatagc ggggcggttt tgggcagtgt aaggaagaaa ataataaacc
     8401 aatatgccga taatgttaga cgcattttca gccactaaac agtaaaaatc gggtgggctt
     8461 ttgcgaaagc cggattccat tacaacttca ggagtaatcg caaaagaatc gatatagtgc
     8521 tcaaacacag ccagtttttg catcagaggg aacacttggt gggtatcttg ttcgaccatt
     8581 ttgcggattg taaatgccat aaaattcctt acaagcggta aaaaaatccc tcacttttgc
     8641 aaagcgaggg aggttttaat tattcgtcaa tagaacgtaa taagtcgttt aagcccactt
     8701 tgcttaaggt tttctcatcc acttttttca caatcaccgc acagtagagg ttgtgtgaac
     8761 catcttttga tggaagcgag cctgaaacca caacagagcc tgccggcaca cggccgtaat
     8821 gtacttcgcc ggtttcacgg tcgtaaattt tggtagattg accgataaac acgcccattg
     8881 agatcacgca gttatcttcg acaatcacgc cttctacgat ttcagaacgt gcaccgataa
     8941 agcagttgtc gccgatgatg gttgggttcg cttgtaatgg ctctaacaca ccaccgatgc
     9001 ccacgccacc agaaaggtga acatttttac cgatttgcgc acaagaaccc actgttaccc
     9061 aagtgtccac cattgtgcct tcgccaacgt atgcaccgat gttcacgaaa gatggcatta
     9121 acaccacgtt tttctcgata tgtgaacctt tacgcaccac cgcacccggc acggcacgaa
     9181 tgccatctgc tttgaattgc tcttcggtgt agttgccgta tttggttggc actttgtcgt
     9241 agaatttggt ttctgcaccg tcgatgattt cattgtcggc aatacggaat gaaagtaata
     9301 ccgctttttt cacccattgg tttactaccc actcgccatc ttttttctcg gcaacacgca
     9361 gtgaaccgtt gtctaatcct gcgatcacct cttctactgc tgctttggtt tcagcatcaa
     9421 cggttttcgg agtaatttcc gcacggcgtt caaatgccgc ttcaataata gcttgtaaag
     9481 acattgttgt gttccttcaa tatataaatt aaaacagaaa attcggctca ctttttaaca
     9541 tagaaaggcg tttatttcca caagaaaaaa catatcgcag aaatttagtt tataattcca
     9601 agccacttat ttgatacaag cggtgatttt tgtggaaaat tttgcaaatc tgcttaccgg
     9661 taaaacgcgt gagcatttag tgccgttgcc gaacgctctt tcggataaac attaccttca
     9721 gcctcaggtg gttgaggctt ttttgacgtt gcagcatgct gcaaaacaag ccggctttaa
     9781 tttacagcct gccagtactt ttcgtgattt tgaacgccaa aaagggattt ggaatgcgaa
     9841 gtttaggggt gagcgtaagg ttcacgatga taacggggtt gcgattgata tggcggcgtt
     9901 atcggatctt gaaaagtgca aagcaatgtt gagatggtct gcggtgccgg gggcaagtcg
     9961 gcatcattgg ggaacggaaa ttgatatttt tgaccctgat ttattgccgg aaaatacgcc
    10021 tttattgctt gagccgtggg aatatttgga aggtggctat tttgccgatt taaccaagtg
    10081 gttacacgtt aatgcggaaa catttggctt ttatttcccg tttgacggta aacattctcg
    10141 agtgggcttt gagccgtggc acattagcta tcgcccgatt tcaaatgaat atgagcaacg
    10201 ctttaacgat gaaatcttaa aagctgcgtg gcaagatgaa gaagtggcgg gtaaggaatg
    10261 cttacttgaa cattttgaag aattactaaa atgatccaat taattaacga aacccaacaa
    10321 cacgacaaat tccgccaaat ttgcgacaaa tggcagctgg ttgaagataa atccagcccg
    10381 ttagccttag tgctaacgga ggaacgattg gaactacgca aattagacga acccaagctc
    10441 ggggcgattg cagtgaattt tgtggacggt acgatggcac atcggcgtaa attcggtggt
    10501 gggcgaggtg aagccgttgc gaaagcggtc ggcattaaag gggattattt gccaactgtg
    10561 attgatgcga cagccggttt agggcgagat gcttttgtat tagcagcggt tggttgtaaa
    10621 gtgctgttag tggaacgcaa tccaattgtc gctgccttgt tggaagatgg tttaaaccga
    10681 gcttatcaag atgtggaaat cggcagtttt atgcaagaaa gaatgatctt agccgatgtt
    10741 cgagacattt ctcagctaga tccacaatcc caaatggctg aggtagtgta tttagatccg
    10801 atgtatccgc acaaacaaaa aagtgcgttg gtgaaaaaag aaatgcgggt gtttcaacat
    10861 ttagttgggg cagatttaga ttcggacagc tttttcttac cggcaaaagg attggcaaaa
    10921 aaacgtgtgg tagtgaagcg tccggactat gccccgtttt tagcggagca aaagcctgat
    10981 ttttcacaca ccaccaaaaa tcaccgtttt gatgtttatc tttctcacct gaaaaatgat
    11041 taaaggtggg tcatgcgata ggcaagcggt tatttttaca gtaaaattta caaattatgt
    11101 tatcgtttat ttatatttaa aaaggcggtt atcgtgccac aacgtgatta tgtcgctcgt
    11161 tccaacgaga aaaaaagtaa aaaaaatcaa aaagaaagta atgttaaaaa gattttaatg
    11221 cggattatcg gggtaatttt attcttcggt attggtttat ggtttttgaa atccagtgca
    11281 cctgtaccaa cagttccgtc agcaccgcag cctgctaatt cacagactaa aagcgaatta
    11341 ccaagtcgac cggaagagac gtggagctat attcgtgatt tagaaacccg tacggtaatt
    11401 accgataata gccaaacttc acaagaacgt ttggcacaat taacggcgga acaaaagcag
    11461 caaattgaag aaagacgcaa acaagaagaa gcacgcttag ccgctgagca agctcaacaa
    11521 aagcctgcga ccgatgtatc tgctacagaa ttggctccga aaacagagga agttaagtcg
    11581 ttaacggaag aagaattagc agcaaaaaaa gcacaggagc aagctttagc acaaaagcaa
    11641 gcggaagaga aacgcagaca agcagagctt aaaaaacagc aggaagcgaa aaaagagcag
    11701 ccggctaaaa ttgtagcaag tgctgcaaca ctggcagata aagctgcaaa tcaggcgggt
    11761 aaatttgggt tacagtgcgg tgcatttaaa aataaagccc aagccgaaaa tatgcaagca
    11821 agattggcaa tggcaggttt taacgcccgt atcgcaagca gtgccgattg gaaccgtgtt
    11881 tttgtcggcc cgataggtga cagagcggca acttccagag ctcaatccaa tgcacgcagt
    11941 gtagcggaat gtgtgattgt ggcgatgtaa aattgattga aatattgaag agagctatag
    12001 gctctctttt tttatatccc aatcgcatat ttcaaggctt gctttttgat gggtgacact
    12061 ttatcagcca atactaaacc gacattgcgg gcaattttga gcggtaataa atcggtctta
    12121 aacgctttat aaaacacgtc catgcctgtt tgcatcagta aattatccgg tttacgtttt
    12181 tgctcatagc gttgaagcac ctgctcactt gcaaaatttt tgcctttttt gaccgcttgt
    12241 tcgatcacct caagcaaggt tttaacatct ttaaagccta aatttacacc ttgtccggca
    12301 agcggattaa tggtgtgagc cgcatcgccg actaatacca ccccgttttg cacatagtgc
    12361 tgagcgtgct ggcgggttag cgggaaagcc cctgaagcct gcacctgaat gttgcctaat
    12421 tctgcgttga gccggcttgg gaaatgttgc tcaatcgcaa ctcccagctt ttctgctgga
    12481 agcattttca gttcggcaat tttttgtggt gaatcgtacc aaacaacgca gccgtgattg
    12541 ccggaaagcg gtaaaaaggc tcgagggccg gttggataga attgttgcca agtgccgctt
    12601 ggagcaggtt tttcggtggt aacggtggcg agtaaacagt gttggcgata ttgccaagcg
    12661 gttaaaccaa tgcccgccca ttggcgaacc tgtgaatttg caccgtctgc ggcaatcagc
    12721 agtggggcag caaaggtgtt gccatcaacc gtcacttccc aatactcgcc cgctttattt
    12781 gcaaaaattt gctcaaatcc gaccgcttgt aggcagtttg gatattgctt taattgctcc
    12841 cataacgcaa tttgaataac gttgttttcg accatatcgc cgagcttttc caaacccaaa
    12901 tcagctgccg aaaaaagagt gttgaatcca tcaatttccc aggtttcgag ctgggtataa
    12961 ggggtgcttc tcattgcaac aatttgctcc cacacgccca atttttctaa cagttgaatc
    13021 gagcccatac taatggcgga aattcgcaaa tcgtagtctg aatcaggatt aaaggtcggc
    13081 agagggtttt tctccaacaa ggctaaacgc agcccctgtt ttgctaagcc tagagctgtt
    13141 gctgccccaa tcataccgcc accgattaca atcatatcta attcagtttt cattttttct
    13201 tcctttttag ttaggcaaaa tactgctaaa acgccttgaa ttgtagtgca tttcagatta
    13261 ggatcaaacc gatttatcta tttatctaag gagcgtttta tgtcttgcaa aactcatgca
    13321 aaccacgagc acgaacacgg cgaaggctgt ggtcatactg ctattaaaca taacgaccat
    13381 atcgactatt tacacgatgg gcatttacac cacaacaaac acggcgatca ctatgacgaa
    13441 cacgttttag aagtgaatga aaccaacccg gcagactgta atgccgccca ttgctgcggc
    13501 gaccacgttc atggtgaggt ttgcggacac gaagctgtgc cgcacggcga tcatatcgac
    13561 tacatcgtga atgggcgttt gcaccaccaa cacggcgacc actgcgatga ccacgggccg
    13621 gttgaaattg tgaaataaga tttttgatgg gaggttttag cctcccatta ttatttttgc
    13681 gatctcgctc gaaaaattga acattcctgc tacccctctt ccgattttcc ttttatgctc
    13741 tcggtattga tttctaatac cgaaatgtga tgaccttagc gattgtttac agccgagcct
    13801 ccattggcgt tgaagccccg ttggtgacga ttgaagtgca tattagcaac ggacaaccaa
    13861 aattaaccat tgtcggcttg cccgaagcca cagtgaaaga ggctggtgat cgtgtgcgga
    13921 gtgcgttgct gaacgctaat tttatctatc cgccacaacg gatcacgatt aatcttgctc
    13981 cggcagattt acccaaagaa ggcggacgtt ttgacttgcc gattgcgatt ggcattctgg
    14041 cagcctcagg gcaaattgat tctgatttat taacgcagtt cgagtttttg ggcgagttgg
    14101 cactgacagg gcatttgcga ggagtgcacg gcacgattcc ggcagtgatt tctgccgata
    14161 aagccaaacg gcagatgatc ttagccaagc aaaatgcgaa tgaggcatcg cttgtttcca
    14221 atgccaccac ctactttgcc ggctcgttgt tggaggtggt aaatatgctc aacaaacggg
    14281 ataaactgcc gatttgtcag cacatttcgc aacattctgc cgaaattcga ccgcttgtca
    14341 gccgagatct tactgatatt atcgggcaac aacacgccaa gcgagcctta atgattgccg
    14401 ctgccgggca acataatttg ctgtttctcg gaccaccggg aacgggtaaa acaatgttgg
    14461 caagccggct ggcggattta ctgccggaaa tgaccgatga ggaggcgatt gaaaccgcct
    14521 cggtgaccag ccttgtgcaa aatgagctga attttcagaa ctggaaacaa cgcccgtttc
    14581 gttcgcccca tcacagtgca tcaatggtgg cattagtggg aggtggctgt gaaaactaga
    14641 aataaatgtc aaaaacaaga aataaatgtc acaaatcttt ctctaatttc gctataattc
    14701 gatcatcaaa actttaaggg gaaatccgtt atgttctacc tcaataacga caatttcaaa
    14761 cgagaacctt atcgtggata ttgtccgagt caccttgaaa agctttttac taaaccacac
    14821 cttgatatta gaggtaacgg ttattattac cctgacaatg aatatgttgt agcttggtat
    14881 gaatcggact tcattttcaa atcaagaaaa gctcaagcac atgcaaaagt aaagcttgtt
    14941 aatttaactt gccccaaata cactggcaaa aacagtgctg aatatttaag cgttttgtat
    15001 atctccgttc cccttaatta tctacattat ttcactatcg gcagtatctg gaaaggcggt
    15061 gtcgccaaag agcagtttgc tctcgaagaa ttttacatta cggttgaagc tgaaaatcaa
    15121 gatggtaaac gagaaaacct ctcaatcgtt tcattcggtg agagtgagga aaacggttta
    15181 gagaaaccat ttgattacac aatctacact atccccacag aatatcacaa ctacggtgat
    15241 gacctaaacc gactactttc catctcttac caaaatcaaa aattcattat ccatccgcta
    15301 catattttta tgatgcacta cgggtactct acggacatca agcgtatctt ggcaacatac
    15361 ccacttgacg aggtaagaga acgcctattt atagataagg tcgttgagaa ttttgatgta
    15421 gagcgttatg tcgttttacc gaaatacttt gtaaaaaaag atgcgatttt cctctatcac
    15481 ttcaaatatg acgaagagac tacgggaaca agggtaaaaa agcttgtaag ccagtttagg
    15541 ttaaatattc acaatcaaac acatccaata gaaatagatt tttggcacac gcaaaaggtt
    15601 gaattgaaaa tccgtggtgt tcgacttgga aatgctgtgt tatgcgcaga aattatcggt
    15661 cttaatcagc ccgaaggcga agatattacg ctagtgctat ctcaatcgaa aagagaaaaa
    15721 tcgggtaata aaaccgagga acaaaataac gaggtaaata acgttcctat taccagagtt
    15781 tatacacgag aacctgaatt ggatgagtta ccactcaccg ataactcccc agataatcga
    15841 acagtcgaat acaacaagcg acaatttgaa ctcttgggcc gtcaacgcca aatcagagcg
    15901 ctcaagaaag cacgcgaaga gagtaatcag aaaatgaaag ccttgactcc agatgagata
    15961 gactcactgg gtgtaggtga atcagatggc cgaaacggta aggttggact cgctttctgt
    16021 ttccttgatg atacacctgt tggcaaaagc tccaaactat acaaattatg gcagcacgcg
    16081 aaggctgttg cggaatggaa tcacggtgag gcgcactggt acacgcctaa tctcggtttt
    16141 agaaatgacg atgaactcct tcccgtttcc ttagaaacca acaaatgttt cgactaccct
    16201 gaaatcgcga taattatccg cctccaaata tacggagaaa catttttcct gattgatttc
    16261 tcaatgaagc aaagagatat aagcattcgt ggcttagggt ataaacccga tccaaacgaa
    16321 gattttctct atgaaagtga tatgagcaaa agcgaattat ccgaattatt gtccgcagtt
    16381 catcatcatg aacatctgcc aaaagagtac atagagaaaa agaacaaaga aaaaaccaaa
    16441 ctcactacat ttaaccatag cgaagccgaa agtagtaact gggcttataa cgcggtgcaa
    16501 aaattaactt caagggcaat tactaagccg acatattttt aattattttt atgaatgcag
    16561 aacaacgtgt aattgttact ccgacatttt ggggtaaatt ttttggaaaa attaaaagtg
    16621 ttgaacttca acaaaacaaa gttatcgtaa ctgacaaaaa gaataatata actgaacatg
    16681 atttaggaaa aacttttgac tttccagcta tccagaagtc tttctttggt actaaattat
    16741 tttttaaaga cgatagcaca gaagttgttt tatcaaaact tgcgaaaaaa caaactgata
    16801 gtctattact tgaaatcgaa aaagtagttg catctaatat taaagtgaaa gtaaaagagg
    16861 gttttcaaca ctttgcaaat ttagccgaaa atcaatatct cagagattcc gacattccta
    16921 cattaaatga tcgtgtaaga ttgtcagtgc tttcctatgg ggataacaaa gaacattttc
    16981 aaaaatactt tgatgaaagt ttggttaaga aaattcaata tatctcttca ctttttcctg
    17041 taaatgccat aaatgctcaa acaattcgaa gagaatacga gcaacatgtt ttaaatcatc
    17101 gcaagcattt ctttgatgtc attgaatcta atccgcttac tgagcaacaa agattgtcag
    17161 tcattcggaa caacgacatc aatatggttc ttgctgccgc ggggacagga aaaacgtctg
    17221 taatggtcgc aaaagcattg gacttaattg attctggtgc ttgtaaaagc gaagatattt
    17281 tgattcttgc atacaaccgc gatgcagcaa ccgaactatc cgaacgctta caagaacgtg
    17341 cacgagaagc caatttagat ctggaaaata gccctagcat ctcgactttc catgcgcttg
    17401 gccgaagaat tattaaagaa tgtggaaaat cagtccactt gtcaaaattt gccgaagatc
    17461 cgatgaaatt agatagatgg ttcaacaaat ggctagagga ctacatcaaa gaagatcctg
    17521 ataatcttgc aaaattcatt caacttgcat accaacctat cgatccattc caattcaaaa
    17581 cgaaagacga atacgataga tatgtaaatg acaatgacta tcgaacctta caaggcgaac
    17641 gcgttcgtgg ttatcaagag ttattgatcg cgaactggct ttttagccac agcgtagaat
    17701 atgagtatga accaaggtat gtatcaaaac gccgtatcga gattggtttt gactacaaac
    17761 ccgatttctc tttgggtgat ggtgtttacc ttgaacattt cggcattgac cgacaaggta
    17821 gaactcgcgc agatattaac gcgcaggaat ataatgccaa tatccaaaga aaacgtgagt
    17881 tacacgccga acataataca acattactgg agacatacca ctacaactgg gtggaaaata
    17941 cgttatataa acgactagag caattgatga atgaacagtt cattcctctg aagccaaaat
    18001 cacaacaaga gattttagat gcactcaatg aatcaggaat cttcaaagaa aacaaaaatc
    18061 gctatttgaa gtgccttcaa gctattcgta cagagcgatt agactatcaa caaatcttaa
    18121 aacgtctaac cgatgcgaaa attgtctatg ctaaagaata tgcgacattg ctcatgcgta
    18181 ttcatgatgc ctacgttaaa gaactacgta gcgcaaatga aatcgacttt gacgatatga
    18241 ttttgttggc tactcaactg gtgaaaacag gtgagtttaa acctaaatgg aaacatattt
    18301 tagtcgatga atttcaagat atttctatgg ctcgattgga gttattgaaa gaaatttata
    18361 ctaaagggcc tcgaccgatt tggactgttg ttggagatga ctggcaatca atctatcgtt
    18421 tctctggcgg taaactagaa gttactacgc gatttaatga tatggtcggc tcacacacgc
    18481 taagtaaact agaaaaaacc taccgctata acaatagtat tgctgacaca gcaggtcaat
    18541 tcattatgca aaatcctgag cagtatcaga aaaatgttgt aacgcataca aaggtcgctg
    18601 attcttgtgt tcatttgtat gactctcatg tcgtaaagga tgaaaaatca gaagccaata
    18661 tcagtttaaa agcctcagca atattaaaac tgatacgtca aaaagcacct gaagccactg
    18721 tcgcaatttt ggctagatac cgttaccttt tagaagatgc aaaaagtgta atcaaagata
    18781 agaatgttaa attttggacg ttccacggct caaaagggtt ggaagcagat tactgcattt
    18841 tacttggttt cttccaagga aaagtcggat ttcccaacca aaataaagaa gaagccgttg
    18901 tagaagcatt gcttcctatg ctagacagtt ttccacactc agaagaacgt aggttatttt
    18961 atgtggcatt aacgcgtgcg aaaaaagaaa gttatttgat cgcagatgcg aacgcgccat
    19021 cagaatttat caatgaatta ttatcaccga aatacaagat agatattgtg tcaaaacgat
    19081 tccaagaacg ttatcggaca atctttaaat gtaatgaatg tagcactggc tatttcgtga
    19141 tgaaacaagg taaatttggt cagttctatt cttgtacatc aggggaagta tgccgctctt
    19201 cgccacggat ttgtgaaaaa tgtggccgtc ctatgaagct gcgagaaggt aaatttggtc
    19261 agttttgggg atgctcagga tatggaatca aaggcgatca atgtacgaat actcgtaagt
    19321 attttatgta atatattatt ttggaggatt ttgtggattt atttgaatca aaaaaacaat
    19381 taatagagtt aattaaaaag tacgatagtg ataaagaaat ttattcttca tcctcataca
    19441 atgagtctca gttaagaact gactttttag accctttctt tggtttactt ggatgggata
    19501 taactaactc aaagaataaa ctcacatctg aaagagaagt gattgttgaa gaaccactaa
    19561 aagaaaaagt ttcagaaaat gtaaaaaaac cagattatac atttagattc aattctcaaa
    19621 gaaagttttt tgttgaagct aaaaagccaa gtgtcaaaat caagactgac cctttacctg
    19681 ctcatcaggt aagacgatat ggcttcacag caaaattaag tatttctgtt ttatctaatt
    19741 ttgaatatct tgctatatat gattgttcag aaatagttga tgtacaacaa gatgctctat
    19801 acgcaagggt acgattatat cactatacag aatatgtgaa attttttgat gaaattatga
    19861 atctcttagg tagagaaagt gtttattcag gtcattttga taatgaatgg cgtgaaatct
    19921 ctcaaaaaat agaaaactct aagcaaacag tggatgaact attttttgaa caaattaata
    19981 agtggcggca tgttctgggt agtgaattac ttaaaattaa cccttgtatt tcaaacaatg
    20041 aattaaatga tgcagttcaa gactatatta atagcataat ctttt
//
LOCUS       DANLXK010000036        19732 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.036, whole genome shotgun sequence.
ACCESSION   DANLXK010000036 DANLXK010000000
VERSION     DANLXK010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19732
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            41..421
                     /locus_tag="PXD88_001066"
     CDS             41..421
                     /locus_tag="PXD88_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280655.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
     gene            complement(474..1991)
                     /locus_tag="PXD88_001067"
     CDS             complement(474..1991)
                     /locus_tag="PXD88_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL6280656.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFVLPLIFVLIS
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRVPTAPEDSGYNQMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQ
                     VRFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILL
                     TNSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADV
                     KQNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRL
                     TSSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTF
                     VSFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFL
                     VLPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
     gene            complement(2002..2319)
                     /locus_tag="PXD88_001068"
     CDS             complement(2002..2319)
                     /locus_tag="PXD88_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6280657.1"
                     /translation="MKSDTTKPKMTRVITVLKITLMIIGIILLLLVVGWLAMTYFPST
                     NFQAWFYETRYAWLGWRFVLYVAIWLLMVQLNRKGQMPLKARLMILSVIPIIEGLNLL
                     YLL"
     gene            complement(2309..2737)
                     /locus_tag="PXD88_001069"
     CDS             complement(2309..2737)
                     /locus_tag="PXD88_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280658.1"
                     /translation="MNKQHYRLFNAGPQKSSLGVVSPAVETQLLGFCEQIRQLIGVGK
                     QITLFPHRVVQNHWAIELSGEQGSVHLLLNVTGRSLLPTSNNSEWSARLIIEIADHVD
                     AYWFSAFLTQYLGLKSNLLPLSTSIADNSVYNEVIDNNEV"
     gene            complement(2737..5574)
                     /locus_tag="PXD88_001070"
     CDS             complement(2737..5574)
                     /locus_tag="PXD88_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL6280659.1"
                     /translation="MSFLSEVFSSFKPTKAGVISSEPNENTGESDIIQNKMSEVNNEV
                     QQLKRSGKLTQSQHHRRLYSQEPSFIDHLPWGEYLNEHGVILLDDARSVGAVFDIKPI
                     GTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIEQLRNYISP
                     IAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKSN
                     DSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLSN
                     NDCYHLFGKQTSNDGLPELAFNDFSEDLFYSQPKNEGNYWYFDDQPHEVVVVNNLRKQ
                     PEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFE
                     SKYLKEDCQTVQSYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVK
                     ENAEIAPLNSYLRWLPMNFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGIT
                     YFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVE
                     AGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDN
                     DDTDDEGDMQRDLLAEMELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSE
                     GRQTLTEDIKNALEALSHDEHTREERRTRLAEMAESLEMFCTGVNGQFFNREGAIWPE
                     ADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITAN
                     PLLAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEI
                     NRFRKLSEAQKTMLLSAKKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKA
                     ERKQLMMQHGYTELDAALEVAARIDKARGIH"
     gene            complement(5577..5975)
                     /locus_tag="PXD88_001071"
     CDS             complement(5577..5975)
                     /locus_tag="PXD88_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL6280660.1"
                     /translation="MKHLFCIMISALLITGCTTSTEELLPTNGSTMRDIWDKGASNND
                     LHLYRSQQGRTLDPVDYIPNSEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            complement(5988..7442)
                     /locus_tag="PXD88_001072"
     CDS             complement(5988..7442)
                     /locus_tag="PXD88_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL6280661.1"
                     /translation="MKANKALFVILGIVFILVGGIVYALFGRSESVPQPTQQEILDIS
                     IKDLTPEQVRTMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     NDAVNNETRKLQEQIADLKMQLFDMATLVNNKPTTQESTPQVEAQPNTVPNKGFGTAG
                     DKLPIGGATMSNVDTSGMYWVEPSDQISLDASGKPVSGNTVATKFGFPKDFNGGQSAG
                     NNEKKGLPFFPETDTVTSSQGTAGNARGKNQMTSVYTIPSNSTFLDSVAMTGLIGRIP
                     IDNRVSDAYPFKVLIGRENLIANGIELPDVDGAIVSGTATGDWTLSCVRGSVKSMTFV
                     FNDGRIVSTSNKGNGEEIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGSSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVSIHIEKEIEIDYNAQGRKVKYGSKSTNSQLD"
     gene            complement(7454..8338)
                     /locus_tag="PXD88_001073"
     CDS             complement(7454..8338)
                     /locus_tag="PXD88_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL6280662.1"
                     /translation="MKRLPILLVSLLIGFSGSSLADVLMKWERKPLPVALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVTTGEIFLFDLTAA
                     SKVANPEEAIRVVFDGTVEKQSFSSNRDDESSDLPIANSRPQLPVPAALTRYAAQSLY
                     APLRTVEPLDGVRRVAHRLPKKITKLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNT
                     QITLDPRELQGQFYAATFQHNWLGGYGENEDTTTLYLVTEGYANNALIPETRPVKLVS
                     KKVKRTTKVETKPAQSAK"
     gene            complement(8338..8982)
                     /locus_tag="PXD88_001074"
     CDS             complement(8338..8982)
                     /locus_tag="PXD88_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL6280663.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITTLKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTIFSEDSWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDVDSAQNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            complement(8986..9351)
                     /locus_tag="PXD88_001075"
     CDS             complement(8986..9351)
                     /locus_tag="PXD88_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL6280664.1"
                     /translation="MSEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGIVAAVKRGKPEAYLNRLVEKKMDDLFN
                     GHKFIKREGFWSIRRYRRK"
     gene            complement(9374..9763)
                     /locus_tag="PXD88_001076"
     CDS             complement(9374..9763)
                     /locus_tag="PXD88_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL6280665.1"
                     /translation="MNRIKSLTKHLHSRYLAVMLFFWGSLQNAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEIIWIVLKGLVTLGAVILAAVAILTVVKALIGIYNEATSENGKKGWG
                     HFILALIIGFIVIFFCLWLVKLAVGLF"
     gene            complement(9778..10011)
                     /locus_tag="PXD88_001077"
     CDS             complement(9778..10011)
                     /locus_tag="PXD88_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL6280666.1"
                     /translation="MSYSPANAFSVASGIDPFRLKIMIAIIFLSLLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLACVTYFFIY"
     gene            complement(10011..10337)
                     /locus_tag="PXD88_001078"
     CDS             complement(10011..10337)
                     /locus_tag="PXD88_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL6280667.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPALASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHSDIETVKKGIQQYINPSRALPRDPNVLRTLSDDY
                     SKLRGQ"
     gene            10524..10907
                     /locus_tag="PXD88_001079"
     CDS             10524..10907
                     /locus_tag="PXD88_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280668.1"
                     /translation="MRYQMRYLALFLVVFPYVAHSLPSAQKVGNICHAENAQYNYGGL
                     WELSLRGKLICNYWQFLGDDERKKIELQLDEYGEFPIWNTSEQISEQIIEDDEYPQYW
                     EVEDWEDSDWDTESENEDTEATTEE"
     gene            complement(10939..11634)
                     /locus_tag="PXD88_001080"
     CDS             complement(10939..11634)
                     /locus_tag="PXD88_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL6280669.1"
                     /translation="MSEETKARRKSGLINLIFGKINMSLAAIAVSLIFSIILEWIGIA
                     FWWPQEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATSIIENVYNWLFVYTGVKE
                     WLTSPGNGSMEQWVHHYGRAYIESVIYVVITFIIRLIIIVFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVLYLSIPFSIHPNIILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(11631..11984)
                     /locus_tag="PXD88_001081"
     CDS             complement(11631..11984)
                     /locus_tag="PXD88_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6280670.1"
                     /translation="MSSAKMREEKRTNLLDLPNKYRNFNGEFSASCGLDNAEELLIHS
                     QSYFIEWFEQGYSFHQFAEKFADQGLSLWSADEVSMRHSDKSKDIFAFYLAFDNNPSG
                     YILVQCQLDREDSLQ"
     gene            complement(11977..14178)
                     /gene="traD"
                     /locus_tag="PXD88_001082"
     CDS             complement(11977..14178)
                     /gene="traD"
                     /locus_tag="PXD88_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL6280671.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAAVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHRNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTHLTSKDSRWNLVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTADERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNDGLPGAFKEKSKPVKINLHCD
                     EFNELMGDEFIPLINKGGGAGIQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALMDGSKLWKIRMPLPAVDKDDMMHQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYKTQIDHQVDNFGIDEPYDIDEEENDE"
     gene            complement(14178..14684)
                     /locus_tag="PXD88_001083"
     CDS             complement(14178..14684)
                     /locus_tag="PXD88_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6280672.1"
                     /translation="MQNKVKVLLFSLYVSHFSWADLTVIADFGGESAVRFYESLQPEH
                     DENAPNYPNSISASVSEADILPIVSHKLSPGTIKEKPFDLTGMQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVQTLSELNQLRDIVPELRILPTPGDDLAERIGIAHYPVL
                     ITESGVSQ"
     gene            complement(14687..15457)
                     /locus_tag="PXD88_001084"
     CDS             complement(14687..15457)
                     /locus_tag="PXD88_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL6280673.1"
                     /translation="MDITRVLVIVAVFLSNISISQAKPFNGFGSEIDSYIRMAAQRYQ
                     VSEAMLRGFVKMEDGWYGNISPTGATGVGQFTMGTWNWLSETERGKQLGMKLITAKNR
                     GSYADPRRDKYTNTLATALLARWHIEQFQLRNIPITDENLYMAHNIGLDGLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMTVSKQGHIHTGVAAFVY
                     PTSQMGKSVKWVEPDNKMIWVEPKNAMVWVEPQNTLQR"
     gene            complement(15436..16209)
                     /locus_tag="PXD88_001085"
     CDS             complement(15436..16209)
                     /locus_tag="PXD88_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL6280674.1"
                     /translation="MREISMKFNLCRKAIPLAVLPLLLSFALPTLAQNMQTETVSSSQ
                     STLQKQSQHQQSQLSDSLKQAKEWGLTVEEWSRYTELMKGERGMWSPNLDPLTALGIE
                     ARTAEEREKYARMLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSVGR
                     VVYFTRFDNCDSCKSDLGKILSYANNQTPLDIYIVGQNISDNDIRKWAADNNIDPIKV
                     SKRLITLNHDKGYWLRYSLGKMPAAYQIKQDGEWTSLVY"
     gene            complement(16209..16838)
                     /locus_tag="PXD88_001086"
     CDS             complement(16209..16838)
                     /locus_tag="PXD88_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280675.1"
                     /translation="MKTKISLMTVFMLGLSGCVHQQDTAQNSDEITPMPDSLLTPQMQ
                     QLPPQDRIVSKDIYQEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVSNPKN
                     RFTANVQQGLRSTLTNTGLDLCYPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDISRTICFKARESSFQNPHKPAVAVTTTTIKTEVIEE"
     gene            complement(16997..17257)
                     /locus_tag="PXD88_001087"
     CDS             complement(16997..17257)
                     /locus_tag="PXD88_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280676.1"
                     /translation="MTFELGRVCTTRAVAECFNQNALVELLNRYCYGDWGNLCEEDKL
                     ANQEAMKYGGRIVARYDVDDESLYIITEADRSCTTILFSYEY"
     gene            complement(17370..17732)
                     /locus_tag="PXD88_001088"
     CDS             complement(17370..17732)
                     /locus_tag="PXD88_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280677.1"
                     /translation="MEDSFFDFDDISCYLGQWEAILEEYSDIVSIEDFWLVAKEFETV
                     PHFGNLYQELVISRLIQRFCTELDIEQDSDLVEFDYYINAIDTHFYINRQRICDIDDW
                     NEMLDKIRKEMTPAKLAA"
     gene            complement(17812..18219)
                     /locus_tag="PXD88_001089"
     CDS             complement(17812..18219)
                     /locus_tag="PXD88_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL6280678.1"
                     /translation="MNRQGIYINGKQVFDSKGKEINSVQIINSTVQTVVGINKGYISM
                     AAGNNVLIVDGQTIALEPSPTINIEVFGNVTNLNAGSENVRVTGDAKSVSTVSGDVTV
                     DGNVTSNVKTVSADIHCKSILGKINTVSGDIYR"
     gene            complement(18245..18925)
                     /locus_tag="PXD88_001090"
     CDS             complement(18245..18925)
                     /locus_tag="PXD88_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280679.1"
                     /translation="MNSLQQFVKTLSPTVLNGRHFDGIVGDVVFVQNGYGKWLDQGFT
                     IIGFDKSIEEKDWIYLDWDCYWFGKNPAQVIPEKSWAQRSWLARAYSISLERFNSLGL
                     EREYNIVSDWDNPIYGTDIQLIEHSKEFFRWTEADDRGIFLVHNEMAFHFFKKEIKAS
                     SEPEYYQPIETFWKDATVVLNIEDLDMLERVGLEQTNTPALAKLTTFVQAARNEISNG
                     NIVFYRAF"
     gene            complement(19031..19462)
                     /locus_tag="PXD88_001091"
     CDS             complement(19031..19462)
                     /locus_tag="PXD88_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL6280680.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEHKKGNPFYACRVAAL
                     VGESDSPEYRYFDMNVVGKETETLIKKCQKAVSEEKKVLVSFVMADLWFDTFTYSSDS
                     KYHKKGDTGVSLKGRLIRIKMIKIDGEIVYQEKPKADEQSE"
BASE COUNT         5864 a         4133 c         3740 g         5995 t
ORIGIN      
        1 gtcgccaaaa acaataacct tttatcttag gaaagatact atgaaattta tcgatttcgg
       61 aaagcagctc gctaagccgg ttaaatttat caaacaacgt accgcatttt taccaaaacc
      121 gctacaacaa gctgtcgttt ttgcggtgat ttttgcagga cttcccttgt ttttagttgg
      181 attcacggtt ctgcgaattc tcaatggaac accagtagaa gatatttcaa caaatgacgt
      241 agcatataat ccaaaccacg tcgaaaacac ggttaatgaa attgaagatg atagtgagga
      301 tagtaagccg gaagatttat gggatgtaat tgctgatcaa gacgaaaatc agcttgatgg
      361 atatcgtgat ggatattttg gatatggact ctatcagggt ggctattttg taaaaagatg
      421 agaaaatatg attagaaatt aataaggtag agattaacct ctaccttatt gttttatttg
      481 ttaaaccctg cagatatttc cttaccgcct ttcttaacta aattaccacc ttgagagcct
      541 gcggatttac tatctaatga atcagtagta aaaccggcag ctatatctcc tatttttact
      601 ccagcccacg acatactgcc tagccaaatc gccggtaaaa ccaagaacat cgaacccatc
      661 acaaaattga cgataaaatc atcttgcgta ttttcaagga aatacggatt tattcgacta
      721 tgtgcactgg aatcatatag agcggatagt agccaagaat ctaaccatct tgctaattcc
      781 caccagaatg tcagtgatac caaagcaaaa ctcacaaaag ttaatgtaac taatgttttg
      841 agagaataac cactcatcac aataaccagc ggagtaatga tgatcacagc catcaacata
      901 aaagcatgta ccatcggcag tgcttgtcgc attgcatcga atgctggaaa ggctgcaaag
      961 ctggcagcta agcttcccac tgaagatgtt aatcgagtcg ttgcatttgc aaatgtagga
     1021 tctaaattcc ccccataccc gggataaact ttccctctcg aaatatccat attctctgct
     1081 cgtaatacag tacggagtat ggattcatcc gcattttctt tgctgctaaa aaaatcaatc
     1141 acttttgcag agaagttctg tttgacatca gctaataaac gatcttttaa accagtattc
     1201 gccgtatccc accactctgc acaatttgga aaaccacctt ccccattatt cggcaatcca
     1261 ttatcccggg aagcattgta gggaaataga ctatgaggtt gttgagctcg ataacgggga
     1321 taaagctcac tgtttgtcaa aagaatacga ccacctaacc agctggtttc acgcacctgt
     1381 gccggagtca atgagagctg actgctttga attttctgac gtgcaggtac ataacattgt
     1441 tgtacaaata agcgaacctc agtcaataat gcaggattat tgattttttc atgttggacc
     1501 tcaaagcgaa cttgacgtaa atccggttta cacggaattg aagctgttaa tgcgtgtgta
     1561 actcctttgt tgatttgatg gaataatccc caccaaagcg gtactctcgc ttgctggttg
     1621 cccaattcag agttcatttg attataacca ctatcctctg gtgcagttgg aacacgataa
     1681 ccacaggctt tagaacgttc tacattcaac tcaatattat tcaggttgat cggtatcatt
     1741 ggagctaaga ccaatacaac gacaaacatc gccgggtaaa atttgaggct gagccaagta
     1801 ataagtaaat cccctttatt accttcgtcc tcaccttgtt ttttgacttc catccacgta
     1861 ctgattaaga caaaaatgag aggcagaaca aacaaccctg tttgaaccaa tacagcgaaa
     1921 atattgttgt tgatgatcca agccagtaag gtaagaaagt attctaagta actatctacg
     1981 gtaaaggtca tctcatcctc cttaaagtag atacagtaaa ttaagtccct caataattgg
     2041 gatgacagat aaaatcatta acctggcttt taatggcatt tgcccttttc gattaagttg
     2101 taccatcaat agccaaatag ctacatataa aacaaatcgc catcccaacc aggcatagcg
     2161 ggtttcatag aaccacgctt gaaaatttgt ggaaggaaaa taggtcattg ccaaccagcc
     2221 aacaacgagt agtaataaaa taataccgat gatcatcaag gttattttta atacagtaat
     2281 aacccttgtc attttaggct ttgttgtatc agacttcatt attatctatt acctcgttat
     2341 acacagagtt atccgcaatt gatgtggata agggtaaaag attacttttc aaaccgagat
     2401 actgagtaag gaatgccgaa aaccaataag catccacatg atcagctatt tcaataatta
     2461 aacgagctga ccattcactg ttattggaag ttggtagcaa agaacgcccc gtcacattaa
     2521 gtaataagtg aacagaaccc tgctcaccag aaagttcgat agcccagtga ttttgcacga
     2581 cacgatgagg gaataaggta atctgtttcc caacgccgat gagttggcga atttgttcac
     2641 aaaatccaag caattgagtt tctaccgctg gagatacaac tcctaatgag gatttttgtg
     2701 ggcctgcatt aaataaacgg taatgttgtt tattcattag tgtattcctc ttgctttatc
     2761 aatccgagct gcaacctcta aagctgcatc gagttcggta tagccgtgct gcatcatcag
     2821 ttgcttacgt tctgcttttt catgtttttc agtcattcct aaagctaaaa ataagctagg
     2881 cggtacaact cggaatagag cttccatatt cgttgctaat accacgccct cggtatattt
     2941 acgatctgat tttttggcag ataacaacat cgttttctgg gcctctgaca gtttccggaa
     3001 acgattgatt tcatcaattt cactggcaga cacattcaac aattcccacc attcgaccat
     3061 tgagagtaat ttcgccgctt cattcgggaa gtcatccata ttttgagtag caagccatag
     3121 ccaaatccct agtttacgcc acatttttga gcctttaact aggaatttag ctaataatgg
     3181 gttggccgtg ataatgtgtg attcatctgt tacattcaga atcatccgat cactgtgttg
     3241 gtatttttca ccaagactgt tgatatggtt aatgagtgaa atataggaaa tggccaactc
     3301 tgcttcatag ccttcccggg caaacatagc taaatcaact aaggttagat cagcctccgg
     3361 ccaaattgcc ccctctcgat taaaaaattg cccatttaca ccggtacaaa acatttctaa
     3421 tgattctgcc atttctgcta aacgggtacg ccgttcttca cgagtatgct catcatgact
     3481 taatgcttcc aaagcatttt taatatcttc agtcagcgtt tgtctgcctt cagatttggt
     3541 ttggcgagct gcatttaaaa tggcacgacg aatagcagca cgatcagcac ggctcatttt
     3601 ttcatcttct ttcttttcac ctccggtgat catcaaacgt gccgtcagct ccatttcggc
     3661 caataaatct cgttgcatat caccttcatc atcagtgtca tcgttatcct caatgtcttc
     3721 cggcacatct tccgggttta attccatatc caatagacga tgtgcttctg aaaagagtgg
     3781 taagacaatg ccgctgtttg gagctaacgt aatgcgattt acagtcagtc cgaaacgttc
     3841 tgcatagtcc gctaataaac caaatgaatt tcctgcctca acaacaaaag tccgtgggcg
     3901 ataaacggcc atagcctgac ataattgccc acataacgta gctgattttc ccgaaccggt
     3961 tggacctaat aatagcttgt gagcattttt ggttctgtct ttacggttaa atgggtcgaa
     4021 attaaatggt gctcctcctc gattaaagta agtgatcccc ggattcccag tcccggtatc
     4081 tcggccaaag ataggtaata agtttgccaa atgttgtaca aaatagtact tcgtgtagta
     4141 atgtgatttg gcatccatct gcggattaaa attcattggt agccaacgca aatagctgtt
     4201 aagtggggca atttctgcat tttccttcac gggttctagg ttgttactga gcagaatcgt
     4261 tctcaactgg cgagaacggg tacgtagctc cttttcatcc ttacctcgaa cgtaaaatgc
     4321 aatagctgct tgatagagtt tatgcccctc tttaagataa gactgtacag tttgacagtc
     4381 ttcttttagg tatttcgact caaaattttc acctaccgct cgactactaa ttttttctaa
     4441 atgtgcctcc aacttatcct gtggatggat gacgatggta attgccataa tggttgattc
     4501 cggcaacaag tcaaataatg cattgatatt acgcccacga gtaatctcgc cagtcatcaa
     4561 ccccacttcc ggttgtttcc tcaaattatt gactacaaca acttcgtgcg gttggtcatc
     4621 aaaataccaa tagttgcctt catttttcgg ttgagaataa aataaatctt cactgaaatc
     4681 gttaaacgct aattctggaa gcccgtcatt tgaggtttgt ttgccaaaaa gatggtaaca
     4741 atcattgttg cttaatccct caaaattaat agatggatta ggattaaacc aacgcaataa
     4801 ccattggcga atttgttcac catctagccg ctgtaactgt aatccagccg ttgttagagc
     4861 cccattgatt cgggaacaag cattattaag ctgctcaata ataagatttt cattggaatc
     4921 attggactta tctacatatc gataaatcac cattttggta ctccgaatac gtccagacca
     4981 agctgtattt gtcactctgt catcaataaa aagcccttct ggtttaccaa tatccttgaa
     5041 atgcttggct tgtactcgta accattcttc gctaaatgca ctattttggg caataggcga
     5101 gatataattc cgtagctgtt caatataagg ctgtaaatca tcgctatctt ggcaataaaa
     5161 ttgcacgacg taaggattta tatccagctc atcaaagcta tcttgtaagg catctttgac
     5221 aagattacgt atccgactta aaaattcaat actacggcca gcagtaccaa tcggcttaat
     5281 atcaaatact gccccaacac tacgggcatc atcaaggagt atcacaccgt gctcattcaa
     5341 atattctccc caaggtagat gatcgataaa ggagggctct tgtgagtata accgacggtg
     5401 atgctgtgac tgggtgagtt ttccactgcg ttttaattgt tgaacctcgt tatttacctc
     5461 actcatttta ttttgaatga tgtcagactc accggtattt tcatttggtt cacttgatat
     5521 aacccctgct ttagtcggtt tgaaagagga aaatacctca cttaaaaaag acatgattaa
     5581 agccctcttg ttctatcacc cggctgagca tattgaactc gtccatagaa aggtagtact
     5641 gtagaatatc ctggaatact gagaggctct ccggaacgag tttgatgtgg gtacacatac
     5701 ataatcagat ccggattagg taaacgaggg aacaagttat taatttcatt ttctgccgta
     5761 cgggtatagg ctcgttgctc actattagga atataatcga cagggtcaag tgttcgccct
     5821 tgttgtgaac ggtataagtg tagatcgtta ttactcgctc ctttatccca aatatcccgc
     5881 atcgtactgc cgttagtagg taataattct tctgttgatg ttgtgcaacc tgttatcaat
     5941 aaggcactta tcattatgca aaataaatgt ttcatcgttt gttccttcta atccagttgt
     6001 gaattcgttg attttgagcc atatttcact ttacgacctt gggcgttgta atcgatttca
     6061 atctctttct cgatatgaat agagacacga tgacccggtg gcacatatac agcatcaaag
     6121 ttttcagcaa aacgttttct aaaccagtca gcagattctt ttaagccgcc tccgatagct
     6181 tgtcctaaga tgaacttacc ctgatcgccg gtaacagctc caacaacact acttccatca
     6241 acaacagtgg ttgtttgtga ctgtgagaat ccttgggcag cagcacttgc agcagccaaa
     6301 aagaaattcg ttcccaaata ttctggggca ttggttttcc gctctcctgg aacacaaggg
     6361 atacccgaac tatctgataa ccagccaatc tcttcgccat tccctttatt agaggtactc
     6421 acaatacgtc catcattgaa cacaaaagtc atacttttta cactgcctct aacacaggat
     6481 agtgtccagt cgccagtagc agtacctgat acaattgctc cgtctacatc aggtaattca
     6541 ataccattag caatgagatt ttctcgacca ataagtactt tgaacggata agcatccgat
     6601 actcgattat caatcgggat acgtccgatg agtcccgtca ttgcaactga atcaaggaat
     6661 gttgaattac ttggtatggt atatactgat gtcatctggt ttttaccacg tgcgtttcca
     6721 gccgttcctt gtgagcttgt cacagtatct gtttccggga aaaacggcag acctttcttt
     6781 tcgttatttc ctgcagattg tcctccatta aaatctttcg gaaagccaaa tttagttgct
     6841 actgtattgc ctgacacagg ttttccactt gcatccaaac taatctgatc gcttggttct
     6901 acccaataca ttccactggt atccacgttg gacatagttg caccaccgat aggtaattta
     6961 tctcctgctg ttccaaatcc tttattcggt accgtattag gctgagcctc tacctgaggg
     7021 gtagactctt gtgttgttgg tttgttatta acgagagtcg ccatatcaaa taattgcatt
     7081 ttcaaatctg caatctgctc ttgcagtttt cgggtttcat tatttaccgc atcattgata
     7141 cgaccattca ctaaatcttc tttctgtttg agttggcgat tttcatcaat taactcatcc
     7201 atacgacgct cattggattt aacggttgtc acaagggtac gcagcgtatc aatcggcgta
     7261 tcaccttgaa tacccattgt tctgacttgt tcaggtgtta aatctttaat ggaaatatct
     7321 aaaatttcct gttgtgtcgg ttgtggaact gactcactac gtccaaataa ggcatagaca
     7381 attccaccga ctaagataaa tacaatgccc agtatgacaa ataaggcttt attcgctttc
     7441 attgcctttc ctcctacttc gccgattgag ccggtttagt ttcaactttt gttgttcttt
     7501 tcactttttt actgactagt ttgactggac gggtttccgg aattaatgcg ttattagcat
     7561 agccttcggt cactaaatac agggttgtgg tatcttcatt ttctccgtac cccccaagcc
     7621 aattatgctg gaaagtcgct gcataaaatt gtccttgaag ctctcgaggg tcaagcgtaa
     7681 tttgagtgtt acccttattt tgcaaacgaa tagcggtaac tacatattcg tctaactgcc
     7741 agctaattaa aggtgttgct tctattgaat aagccggtag cagcttggta atttttttag
     7801 gtagacgatg tgccacacga cgcacaccat ctaaaggttc aactgtacgt agtggagcat
     7861 aaagtgattg tgctgcataa cgggtcaatg cggcaggtac tggaagctga ggacggctat
     7921 tcgcaatagg cagatcagag ctttcatcat ctctattgct tgaaaaagat tgtttttcta
     7981 ccgtaccgtc aaaaaccact cgaattgcct cttcaggatt agcgactttc gaagctgctg
     8041 ttaaatcaaa tagaaaaatt tcaccggttg taacatcacg gaattctatg cgagtggagg
     8101 gaaatgtttc taatgctttt aaatagacgg ctccaccggt agattgaatt cgtagcttac
     8161 cgtccagttc tgccggataa ccaaccttga catttttatc gacaaaaata attcgttctt
     8221 tttccacttg taacgcaaca ggaagtggtt ttctttccca tttcatcaat acatcagcca
     8281 agctactccc agagaagcct ataagcaaag agacgagcaa aattggtaga cgtttcatta
     8341 ttttttctcc tctgtttttg gctcaacacc ttctaagagt tttggaatgg agtgatagca
     8401 attaaaccct aatccccaag ggttttgagc agaatcgaca tccattctca caatactgat
     8461 aggaaaacga atataaactc gttttaccgg ctgtccttgg aaatgttcat ccacacttaa
     8521 atcaagattg acagcccaac tatcttcact gaatatggta actttatctt cactatatcc
     8581 tctaccggta atttcataca ccatacgggt tcggctgcgt agttcattgt tacgcagacg
     8641 atctttataa tcttgtcgta aaaatgcttc acagtgtggt gttaaaaatg gtttgagggt
     8701 ggtgatattt ttctcataat cctcttcgcc atttgtcatc caccgattca tttgctggaa
     8761 aatttgatag gagaatgcat aaattgttgg tttaggaatt tcccaccaag ctcgttggct
     8821 cccagcacgc agatctggtg ggttgtatat cgtaaggcga cttgggaaag tatagattac
     8881 gcctgccagt accaaaataa taatgaaaaa caggaaggca aaaattcgag tcgttttgat
     8941 atgtttatct ttttcgtgta attggctttt taactggctc atttgttatt tccttctata
     9001 tcggcgaata gaccaaaacc cttctcgttt tataaactta tgaccgttaa agaggtcatc
     9061 cattttcttt tcaactaatc tatttaaata agcctctggt tttcctcgtt taaccgcagc
     9121 gacaatacct tttccgatta agacagttgc gatgcagagc aacattgcca ttgccggaat
     9181 aagaagccaa aaatcagtta atatccacaa gaagagacca acaatcagac ctaacataaa
     9241 tcctaatccg gcagatatgc cgaactcact aactgtcatc ccaccgtaaa cggtagcttc
     9301 acgattaagg cgggtgggaa gaaaaggaat ggttgtatct tgttctgaca tattggtctc
     9361 ctagacattt taattagaag agtccgactg caagtttgac taaccacaag cagaagaaaa
     9421 tcacaataaa gccgataatt aaggcgagaa taaagtgtcc ccaacctttt ttaccatttt
     9481 cagatgtagc ttcgttatag atgccaatca atgctttaac aactgtcaaa atggctacgg
     9541 ctgctaaaat aacagctccg agagtgacaa gacctttcag aacaatccaa ataatttcca
     9601 ttggatcttt ggtattacta tccacgcctg gaatttggaa gtctgggatt ttggaagcat
     9661 caggaccggc tgcaaatgca ttttggaggg aaccccagaa gaagagcatt acagccaaat
     9721 aacgactatg cagatgtttc gtaagagatt taatgcggtt cataatagac ctcgaatcta
     9781 atagataaag aaataagtaa cacaagctaa cagtgccact cctttgagaa ataaaactaa
     9841 aagtgaaaaa ggacttttat ctctaaatga aaatccctta taaccactat tcaatgccca
     9901 agcgacggct aagagcagta atgaaagaaa aataatggcg atcatgattt tcaatctaaa
     9961 agggtcgata ccgctggcaa cagaaaacgc attcgcaggg gagtaagaca tcactgcccc
    10021 cgtaatttgc tataatcatc acttaatgta cgtagtacat tcggatcacg aggtaatgct
    10081 cggcttggat tgatatattg ttgaattcct tttttgacgg tttcaatatc actgtgaata
    10141 gcagaatagt taaagtattc tcgtgtttta ggcgaggctt tagctacttt ttctgctcgt
    10201 tgaagtgata attttgccgc ttccagttgc ttaattgcct gggctaattg ctcttgttct
    10261 gttgaagcaa gtgctggcaa gcaagataag gtaacaagga caacaatacc tttccttaaa
    10321 gatgttgaaa tagacatagt gcacctctat ttttagtttt acttcaggtt aagagtgcca
    10381 aaagcgatcc taaaatttaa tggaaaactc tgttaccgtt cagaagagaa attgcacaaa
    10441 atagtaaatg gtgagaaaga tattattcta tgtttaagct agtcaattaa gtagtatcaa
    10501 caccgaaatc ttcacgcttt acgatgagat accagatgag atatctagca ctgttccttg
    10561 tagttttccc atatgttgcc cattctcttc cttcagcaca gaaagtgggg aatatttgcc
    10621 atgcagaaaa tgctcaatat aattacggag gtctttggga attaagttta agaggaaagt
    10681 taatctgtaa ttattggcaa tttctaggcg atgatgagcg aaaaaagata gagttacaat
    10741 tggatgagta cggggaattt cctatttgga atacctctga acaaatttct gaacaaatca
    10801 ttgaagatga tgaatatcca caatattggg aagtcgaaga ctgggaggat tctgattggg
    10861 atactgagtc agaaaatgaa gatacagagg caacaacaga agaataagcc cccgcatatt
    10921 gctaagggct tatgaaattt acaagaattt cttgaaactc gccgcagtta tacagatgga
    10981 taaaccaaac aaacaggctg ctgggactaa aatgatgttc ggatgaattg aaaacgggat
    11041 agataaataa agcacccaag ctgtgaccat cattggcata atataacgtc tagcgtgatg
    11101 gtataggtag gctgattccc gcccggcacc aaattttcgt atatctcgta atgacagtcc
    11161 ttcggttaaa ccggaaagtg cagtcaataa aaagagtggg ctggtaaaaa caataataat
    11221 gaggcgaata ataaaggtga tcaccacata aataacagat tcaatatagg ctctgccgta
    11281 gtgatgtacc cactgttcca tactaccatt acccggtgaa gttaaccact ccttaacacc
    11341 cgtataaacg aataaccagt tatacacgtt ttcaataatt gatgttgcaa aagcagtaga
    11401 agacttggca aacaggcttt gagaaaagtc atccgatagc cattgcatct cattgagcat
    11461 catcgtttgg ctatgcaaat gcccttcttg cggccaccag aaagcaatgc ctatccactc
    11521 taaaataatg ctgaatatga gagatactgc aattgcagca agcgacatat ttatttttcc
    11581 aaaaatcagg ttgattaaac ctgattttcg gcgagcttta gtttcttcac tcattgcaaa
    11641 ctatcctctc tatcgagctg gcactggaca aggatatagc cggaaggatt attatcaaaa
    11701 gcaagataaa aagcgaaaat atctttggat ttatccgagt gacgcataga tacttcatcg
    11761 gcagaccata acgaaagccc ttgatctgcg aatttttcgg caaactgatg gaaggaataa
    11821 ccttgttcaa accattcaat aaaataggat tgactatgaa tcaggagttc ttctgcatta
    11881 tctaagccac aggaagctga aaactcccca ttaaaattac ggtatttatt tggtaaatct
    11941 aatagattgg ttcttttttc ctctctcatt ttggcactac tcatcatttt cctcttcatc
    12001 aatatcgtaa ggttcatcta tgccgaaatt atctacttga tggtctatct gtgttttata
    12061 ttgaggctcc gacatcgctt caaatgcttc tgcaatgtct cgggacggcg tatattctgt
    12121 aaatgccggt tgccaccaat tttcaacaac gtgatagttt ttacgcatat aatctgtcag
    12181 ctctcgtaaa gattgatgca tcatatcatc tttatcgaca gcaggtaacg gcattcgaat
    12241 tttccataat ttactaccgt ccattaaagc gaatgcttgt ccttttggta aattggtaat
    12301 gttggccgga accaacatag gaacggtact ttcgctgata cgctgtccgg tattggagct
    12361 aaacgcctta tcatcgtcag gattactgga gtcagttgta ctggacgtga ccgtgctacg
    12421 tttaatcgtc acttcgtgta actgttttgt gagtaattct gccgtagccg gttcttttac
    12481 cctcagcata tagagtgtat tgaagttacc taaggtttgt cccgctttcg gtttactgcc
    12541 gatacgagct tcaatgtcgg agagtgtttg tgtataagca gttacttgta ttccagcacc
    12601 accgcctttg ttgatgagag ggataaattc atcacccatc aattcattaa attcatcaca
    12661 atgaagatta attttcactg gtttggattt ttctttgaat gctcccggta atccgtcatt
    12721 tgtcccaaat ttatataaat gacctgccat tgagactaag tcagcaaaca tactgtttcc
    12781 tacagcggcc gcaactgtcg catcagagag agcatctaaa ccaatataaa cgattcctcg
    12841 tttacgaata atggattccc agtcaaaaat cggacgttca tccaaaatat cagcataatc
    12901 cggggataac agctcagaaa ttttccctgt cgttaatttt tccaataacg gcaacaatga
    12961 ggcaacaatt ttatcgaaat aggtacggtc atagcgtaca gcactggcaa gtccttgtag
    13021 aattgggtca aagactgcac tttcagcaat gtacttgttg atcacaaaaa tcagcggacg
    13081 gtctttcatt ccgaaaggaa gtgctttttc atccagtcca gcggcgatgg ttgctaaatt
    13141 ttcccaaatt tttggatcgg ttttacgaat gaatttttcc gcataatcaa ggaataatga
    13201 atcaatattt tgtacaaact gggaaatttg aacatagttt gggcgatttc ccaattcaac
    13261 taatgcacgt gcgacgatat tgacaaatcg ccaagcgaac tctttaaatg ccgccgagtt
    13321 acccgctcca cttagctgtc ctgaaatacg cccagcgact tccgaaatac gattaaagcg
    13381 tcctactggg ttataacggg cagaaatttc gggataacct agatggaaaa cataaaactc
    13441 atcttctcgc cccgctcgtt ttgcctccgc atacattcgt ttgagcatat cggcatcgcc
    13501 tttcggatca aagaagacta ccacttcacg ctcatcagca gttttacctc ggtggatatc
    13561 ctgggtaaca aagacctcag ctaaacgagt tttaccgaca cgtgttgtac cgaatactac
    13621 cgtatgccca acccgagagc taacggattg aacgacatca acctcatccg gctcaattcc
    13681 atggatagca ggaataccct caacaggtgg cagaggtcta accagattcc accggctatc
    13741 ctttgaggta agatgtgtta gccaattttc gtgtcgtttt tcatactcac gagccatttt
    13801 aaatagctta gaaggctcca gatattttga accgttatcc gaaaaacaat cgtgtaaccg
    13861 ttgagtgtga ataggtttcc attcaaatcc cttaccgaca aacagatact tattactgac
    13921 cggaatttgc ttgcttgtca ttgaataatt aggcaaacgt ttcaggttgc gatggtaacg
    13981 cacaatttgc caaccttgtt ttgcccgata aaagctcaat gctccaaaac cagctgcaat
    14041 actgtaaccg atacttggat ggagtgccaa agaccaagga gctgcagcac tgacaaaggc
    14101 acaagaagcg tgaaccgctg ccggaaaaaa ttcaacagga ggtcgtaacc acgcctctaa
    14161 ggtatgttta gcagacatta ttgtgaaact ccgctttcag tgattaagac agggtaatgt
    14221 gcaataccaa ttcgctctgc aaggtcatct ccgggagttg gtaatattct cagttccggt
    14281 acaatgtctc gtaattgatt aagttcggag agtgtttgta cattcactac aagccctgtt
    14341 gcattcaacg tgatcaactt ctctcgattt tgttgtaacc actgagctga ggtattatct
    14401 gctccaatta agaaaatggc ttgcattccg gttaaatcaa atggtttttc tttaatagtc
    14461 ccgggagata gtttatggga aacaatgggt aaaatatcag cctcactcac tgaggctgaa
    14521 atggaattcg gatagtttgg tgcattttca tcgtgttccg gttgcaaaga ttcataaaaa
    14581 cgtaccgcac tttcaccacc gaaatcagca atcacggtta aatcagccca agagaaatgg
    14641 gacacatata aactaaacaa taatactttt accttgtttt gcatttttac ctctgaagag
    14701 tattttgggg ttctacccaa accattgcat ttttaggttc aacccaaatc attttattat
    14761 ccggctcaac ccatttgacc gattttccca tttggcttgt gggataaacg aaagctgcaa
    14821 ctccggtatg aatatgccct tgcttggaga cagtcataaa attggcttct tgcttatgtg
    14881 ctaaaaaacg tcctttttgg taattgagaa agtctcttac cgtcatccaa cttttcattc
    14941 cattacgacg catatttaaa atgtcttctt tagtagcttt ccccatcatt gctcgatgca
    15001 gcccatctaa gccgatatta tgagccatat ataaattctc atcagtaata gggatattac
    15061 ggagttgaaa ttgctcaata tgccaacgtg ccaataatgc cgttgctaag gtattcgtat
    15121 atttatctcg acggggatcg gcgtaagaac cccgattttt ggctgtaatc aacttcatac
    15181 caagttgctt tcccctctct gtttcagata gccagttcca ggttcccata gtaaactgcc
    15241 caacaccggt tgctcctgtt ggtgaaatgt tgccatacca gccatcttcc attttgacaa
    15301 aacctcgtag cattgcttca ctcacctgat aacgttgagc agccatacga atatagctgt
    15361 caatttcaga accaaatcca ttgaagggct ttgcctgaga aatgctaatg ttggaaagaa
    15421 agactgcaac aatgactaat acacgagtga tgtccattca ccatcctgtt tgatttggta
    15481 agcagcgggc atttttccta acgaatatct cagccaatag cctttatcgt ggttaagggt
    15541 aatcaatctt ttactgactt ttattgggtc aatattattg tcggcagccc atttacgaat
    15601 atcattatcg gagatgtttt gcccaacaat ataaatatcg agaggtgttt gattatttgc
    15661 gtaagagagg attttcccaa gatcactttt acaagaatcg cagttatcaa aacgggtaaa
    15721 ataaaccaca cgacctaccg attgagaaat atgtggttca acctcaaaag gtagctcatt
    15781 cggataaagt ttctcaaact cctgacgata aactttgtca aaatcaagtt cttttgacac
    15841 tcgttcataa tattttttcg ccaacatacg agcatatttt tccctttcct cagcagttcg
    15901 tgcttcgata cctaaagcag ttaacggatc tagatttggc gaccacatac ctcgctcacc
    15961 tttcattaat tcggtataac gactccattc ttcaacggtc aatccccatt ctttagcctg
    16021 ttttaggcta tcacttaatt gtgattgttg atgttggctt tgtttctgca aagtcgattg
    16081 tgagctactt acggtctctg tttgcatatt ttgagccaga gtaggtaatg caaaggacaa
    16141 taaaagaggt agtactgcca acggtatagc tttacggcat aaattaaact tcattgatat
    16201 ttccctcatt attcctcaat gacctcggtt ttaattgttg tcgttgtaac ggcaacagca
    16261 ggtttatgag ggttttggaa tgaactttcc cgagctttaa agcaaatcgt acgggatata
    16321 tcattaagag ttagttcata agcgggacct gcaatcattt gtagagcttc atataatttc
    16381 atcggaccga attggtaatg aacttttgga agaggtcggg taaaaagtgt ttgaaccgca
    16441 ttaccttgtt ctccgatagg tggataacac aaatctaaac ccgtattagt taatgtagaa
    16501 cgcaaacctt gctggacatt cgcagtaaaa cgatttttag gattggagac tttgactgat
    16561 acgacttgtt caagcagata tttttgacct tcctccggag caatactgat taaggtgtag
    16621 cgtccgtcac gtaccacttc ggtattcgag gtagtctgtt cttggtaaat atctttggac
    16681 acgatacggt cttgtggagg taattgttgc atttgaggtg ttagcaatga atcaggcata
    16741 ggtgtgattt catcactatt ttgagctgta tcctgttgat gaacacaacc acttaagcca
    16801 agcataaaaa cagtcattaa ggatattttt gttttcattt aatctctcca agtatgaaag
    16861 gaatctagac caactatggc gaagtcattg ctgattttga atgatttatt ctgttgttga
    16921 ttgagagaat aaaaaaacgc catcattaga cggcgtttga aaacacaata atgtgctgtg
    16981 ttaatcggat ttctccttag tattcataag aaaataagat tgttgtacag ctacgatcag
    17041 cttctgtgat gatataaaga ctttcatcat ctacatcgta gcgagctaca attctccctc
    17101 cgtatttcat tgcttcctga ttcgctaatt tatcttcctc acacaaattg ccccaatcac
    17161 cataacagta acgattaagc aattcaacca aggcattttg attgaaacat tcagcaacag
    17221 cacgagttgt acatactcga ccaagttcaa acgtcataca tttctcctaa ataaaatacg
    17281 gggaaatgtc acccattagg ggagtatttc cccaagtggg tggactaaga ctgcggcaag
    17341 agtcgttttt agtaaaaatt tgcaaaaaat taggcagcta atttagccgg cgtcatttct
    17401 ttacgaatct tgtctaacat ttcattccaa tcatctatat cacagattct ttggcgatta
    17461 atgtaaaaat gcgtgtctat tgcattgata tagtagtcaa attcaactaa atctgaatct
    17521 tgctcaatat ctaattcagt acagaatcgt tgaattaagc gagagatgac aagctcctga
    17581 tacagattac cgaaatgtgg tacagtttca aattctttgg caacaagcca aaagtcttca
    17641 atactgacaa tatcgctata ttcttctaag atggcttccc attgtcctaa atagcaagag
    17701 atatcatcaa agtcaaaaaa ggaatcttcc attatgtttc tccaagtttt aaataaaaag
    17761 tggggaaaca tacctaccga gaatgtttcc cgatagggtg tatagtcaat attagcgata
    17821 aatatcaccg ctcactgtgt taattttacc taaaatagat ttacaatgaa tgtcagcact
    17881 cacagttttc acattcgagg ttacattacc atccactgtg acatcaccac tgacagttga
    17941 aacagatttg gcatcgcctg ttacacgaac attttctgaa cctgcattga ggttggttac
    18001 attgccaaat acttcaatgt tgatagtcgg agagggttct aatgcaattg tttgtccatc
    18061 aacaattaat acattattgc cggcagccat tgagatataa cctttattta tcccaacaac
    18121 tgtttgcact gtactattaa tgatttgaac gctgttgatc tctttgcctt tagagtcaaa
    18181 gacttgttta ccgttgatat aaataccttg tcgattcata taataatcct ctttgtatta
    18241 gatgttaaaa tgctcgatag aatacgatat taccattgga aatttcgttg cgagcagcct
    18301 gtacaaacgt agttaatttt gctaaagcag gtgtattagt ttgctctaat cctactcgct
    18361 ctaacatatc tagatcttct atgttcaata ccaccgtagc atctttccag aatgtctcaa
    18421 taggttgata gtattccggt tccgatgagg ctttaatttc ttttttgaag aaatgaaaag
    18481 ccatctcgtt gtgaactaag aaaatccctc tatcatcggc ttcagtccaa cggaaaaact
    18541 ccttggaatg ttcaattaac tgaatatctg taccataaat ggggttatcc caatcagaca
    18601 caatgttata ttcacgctct aagcctaacg aattaaaacg ttcaagagag attgaatacg
    18661 ctctagcaag ccaagaacgt tgagcccaag atttttcagg gattacctgt gccggatttt
    18721 ttccgaacca atagcaatcc caatctaggt aaatccaatc cttttcctct atgcttttgt
    18781 caaaaccaat aatagtaaag ccttgatcaa gccatttacc atagccgttc tgaacaaaga
    18841 caacatcgcc aacaatacca tcaaaatggc gaccattaag gactgttggt gataatgttt
    18901 tgacaaattg ttgaagtgag ttcatcgtgt ttctcctaaa attgtaaaat aaaggaaaac
    18961 acaccgcagg gagtgtttcc ctacgggaca taaagtaaag cccaacataa attgtcgggc
    19021 ttgggtaaaa ttactcagat tgctcatctg cttttggttt ttcttgatag acgatttccc
    19081 catcaatttt aatcattttg atgcggatta agcgaccttt aagagacact ccagtatcgc
    19141 cttttttgtg atatttactg tcacttgaat aagtgaaagt atcgaaccac aaatcagcca
    19201 ttacaaatga tacaagcact tttttctctt cagagaccgc tttttggcat tttttgatga
    19261 gtgtttcggt ttctttaccg actacattca tatcaaaata tctgtactct ggtgagtcag
    19321 attcgccaac aagagctgca acacgacaag cataaaaagg atttcctttt ttatgctcta
    19381 ctaaacgaat atcgtttaaa tagccaatgc cggtagtatg tagattgaag taattttttt
    19441 gagtagaagt ttgagttgtc atagtttgtt tctccaaatg taaaaaagcg gagaaacatc
    19501 cttacccaac acgggaaaaa tgttccccgc aaggtggaag taaaatggaa tctcaatgaa
    19561 tattcactga aatgataggg attgagttgg cattcctgca aatttacaga gttccctttc
    19621 agaatgctgg gagacatttt ggcaataact caactacctc taaggatagc cgtcgcttct
    19681 caggagttat gcgacttatt aagtgctgtt atatacagcg tcttaaattg ag
//
LOCUS       DANLXK010000037        19704 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.037, whole genome shotgun sequence.
ACCESSION   DANLXK010000037 DANLXK010000000
VERSION     DANLXK010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19704
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..1081)
                     /locus_tag="PXD88_001092"
     CDS             complement(<1..1081)
                     /locus_tag="PXD88_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6280681.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQL"
     gene            complement(1146..1577)
                     /locus_tag="PXD88_001093"
     CDS             complement(1146..1577)
                     /locus_tag="PXD88_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280682.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1581..3683)
                     /locus_tag="PXD88_001094"
     CDS             complement(1581..3683)
                     /locus_tag="PXD88_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6280683.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
     gene            complement(3710..3988)
                     /locus_tag="PXD88_001095"
     CDS             complement(3710..3988)
                     /locus_tag="PXD88_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDL6280684.1"
                     /translation="MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFP
                     HSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH"
     gene            4957..5388
                     /locus_tag="PXD88_001096"
     CDS             4957..5388
                     /locus_tag="PXD88_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL6280685.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            5406..6398
                     /locus_tag="PXD88_001097"
     CDS             5406..6398
                     /locus_tag="PXD88_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280686.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            6395..7384
                     /gene="oppF"
                     /locus_tag="PXD88_001098"
     CDS             6395..7384
                     /gene="oppF"
                     /locus_tag="PXD88_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL6280687.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(7488..8246)
                     /locus_tag="PXD88_001099"
                     /pseudo
     CDS             complement(7488..8246)
                     /locus_tag="PXD88_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(8376..9017)
                     /gene="bioD"
                     /locus_tag="PXD88_001100"
     CDS             complement(8376..9017)
                     /gene="bioD"
                     /locus_tag="PXD88_001100"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL6280688.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(9035..9790)
                     /gene="bioC"
                     /locus_tag="PXD88_001101"
     CDS             complement(9035..9790)
                     /gene="bioC"
                     /locus_tag="PXD88_001101"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL6280689.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(9794..10441)
                     /locus_tag="PXD88_001102"
     CDS             complement(9794..10441)
                     /locus_tag="PXD88_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL6280690.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(10438..11601)
                     /gene="bioF"
                     /locus_tag="PXD88_001103"
     CDS             complement(10438..11601)
                     /gene="bioF"
                     /locus_tag="PXD88_001103"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL6280691.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(11598..12899)
                     /locus_tag="PXD88_001104"
     CDS             complement(11598..12899)
                     /locus_tag="PXD88_001104"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL6280692.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
     gene            13041..13928
                     /gene="psd"
                     /locus_tag="PXD88_001105"
     CDS             13041..13928
                     /gene="psd"
                     /locus_tag="PXD88_001105"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755522.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL6280693.1"
                     /translation="MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAV
                     THFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADG
                     RISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
                     CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITA
                     SMSTVWAGVINPPRPEKITTWAYEGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLA
                     SHLQVDSPVRMGEILAHQK"
     gene            13953..14507
                     /locus_tag="PXD88_001106"
     CDS             13953..14507
                     /locus_tag="PXD88_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6280694.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(14567..14890)
                     /locus_tag="PXD88_001107"
     CDS             complement(14567..14890)
                     /locus_tag="PXD88_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280695.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(14914..16017)
                     /gene="proB"
                     /locus_tag="PXD88_001108"
     CDS             complement(14914..16017)
                     /gene="proB"
                     /locus_tag="PXD88_001108"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL6280696.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            16183..17171
                     /locus_tag="PXD88_001109"
                     /pseudo
     CDS             16183..17171
                     /locus_tag="PXD88_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            17246..17893
                     /locus_tag="PXD88_001110"
     CDS             17246..17893
                     /locus_tag="PXD88_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL6280697.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            17917..18324
                     /locus_tag="PXD88_001111"
     CDS             17917..18324
                     /locus_tag="PXD88_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL6280698.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            18422..18772
                     /locus_tag="PXD88_001112"
     CDS             18422..18772
                     /locus_tag="PXD88_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280699.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
     gene            18863..19225
                     /locus_tag="PXD88_001113"
     CDS             18863..19225
                     /locus_tag="PXD88_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280700.1"
                     /translation="MIDTFFDLDDTSCYLGNWEDILKEYDDCLSVEDFWHSAKEFDTV
                     PHFGNLYQERVILKLIARFCIELNIEQDSGLVEFDYYINAIDTHFYINSQRICDIDDW
                     NEMLDKIREEMTPAKLVA"
     gene            19338..19598
                     /locus_tag="PXD88_001114"
     CDS             19338..19598
                     /locus_tag="PXD88_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280701.1"
                     /translation="MTFELGRVCATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKK
                     ANVKAIERGGRILARYDVEDETLYVITEADRSYTTILFPYEY"
BASE COUNT         5657 a         4166 c         3987 g         5894 t
ORIGIN      
        1 tcagttgtat aattcgttct gctaatgatt gaaattcttg gtcaaaattt tctttacttt
       61 catccattgt attcaaagca tgtccaaatt gacctgagtt tttaatttgc tcttttgtta
      121 aggaaaatac gggaactcgt agctcttggc taatagcaat caacgaatta aagtcggcta
      181 tgtgagccaa atcaaatggc tctaagtcag aattcgttga tttaagagca gcataaatag
      241 ctgtatcatc aatagcacaa tcaatagttt ttaataccgg cacaaaattc gtaatgactt
      301 catttctaat tcgctcaatc catttttcaa atgatttggc cggttgccct tttcttggtc
      361 gataacgttg ctgaatagta cctaaaaatt gtggcttatt tttaattgca taagatgatt
      421 ggttaaaacc attaagttct ttaaatgctt ttaactcatt atgccatttg cgaatatttt
      481 tagcgagcga accaactgct tgccagcaga aaaaatcagg tgatgtaggt acaataaagt
      541 aatcactaga cattaggata acttcattta atccacccac atttggacta agatcataga
      601 gtatgtaatc aatattgttt tgttcagcta ctttcttaat taaagtcgga agattgccgg
      661 gtatatttct tgttgctgga acaccggcag caatttttaa tgatacacta atttgcgaat
      721 caagctcgga aacattaagg tgaccaggta acaagaacag atttggattc agggtttgag
      781 tgatttggcc aacatttcca ctaaggtagt tatcagggct ttgtccgttt atcagtgctt
      841 caacaatacc ttccatagtc aaatgatgtc tattattgta aaaaagcgct aaatcactat
      901 cttctttgca ttgatcgtag ccaagtacca gaccggttag gttacattgt gaatccaaat
      961 cgactaacaa tacttgatag ccttgatttg ctaaactcca accaacatta aatgcagttg
     1021 tagttttagc aatacctcct ttatgattaa aaatactgat agacttactc ataataccca
     1081 taattctatg aaataattaa cccaccgaac tcatttgaga atggtgggtt aatgctttgc
     1141 tttagctagg ctgcaaatcc agattttctc atcagtttgc gatcaaagtt gtggcgaata
     1201 ggcttatcgg aacgacattc aaatgatgta atatcatttc ctgttttaat atcctgaatc
     1261 tgaacacttg cttcaaaagg tgatttaggg tctgcttcta tatgacctac aatataagat
     1321 tttcctgcat ttcttaattc gagcgagatt gttgtgaatt gtgaaccacc tgcaatctcc
     1381 gatgccggat ttttgagagc ttcttttaca ggatttttga atgtggtatt accgtgagag
     1441 tacacatagt ttcccccctc tttggtaact tttaacgttt ggttatctgt agttgtgcaa
     1501 gaatacacta cattgttatt tgcaaaagca ttcattgaga aaaatgctga taaagctaca
     1561 attgccattt ttttcatagg ttagtttcct tttggtgcgt tgataatgta atcggcttcc
     1621 tggttacgtc ttcgagcatt aacaccatta ttatgccctt gtaaatttcg gattgagtta
     1681 gctaaagccg tcatatcacc tgattgtgcg gagacggcag ccgctttttg aacactttct
     1741 agtttagata atgacccata gttgtatgat accgacgtta atgctgcttg tgcttgagga
     1801 gtcaatttag cccaaacgtc ggcaccaaca ttaccccttg caacattcat aaattgaggc
     1861 attcttcgtg ctaaatcacg ttcagcatct tcccggctta cataagtgcc tttttgaacc
     1921 cgatgaacca taccatctgc agtagtatag gtgtcagagc catatccggc acggttagca
     1981 tttacatccc atttcccgtg gcttaaatat ccttcaaact gtttgataag agccgttgct
     2041 tgttcattcg cattgccgtt catttgggca atttgggtat agctccctac attcacgtta
     2101 ctgacaatgt ttgttgggga ggctttatat gctccataaa aatcactcat gcctgagccg
     2161 tctgatttgg ggatagcaat atatctatcg ccaacggcat tttgtgcaga attagcaatg
     2221 ccactggtgt tgagattatt tgctccggct tgattgctta aattggcaaa gcgacggttt
     2281 ccatcaccca tcgcattatc atcaatagca agagcttgtt cgttcatctg ttgagtaatt
     2341 gcagctaatg ctgtattacc gttgattgaa cgttgcagtt ccatttcgag tttaacttgc
     2401 tcaatttctc tgtcaagtaa tttgaggttt ctttctgctt cttctactaa ggaagatttt
     2461 ataacatttg gctcacgcat accggctaac attgctcggc gaatcagtag caatttttcc
     2521 atttctttag aaatagctaa ttcttgcgat aaccttgcac ccagcaaggc tgcatccggc
     2581 gaagcagcaa tggcttctaa tacgcctttt gttacactga ccgttgatgt actcagtgaa
     2641 ttgagttgtt ccggcgttaa actatctaag tgattcagtg ccgcttctag ctttgtggct
     2701 ttttcaatag ttgtttgttc aataaaatgg gcgattcctt tcccggcttt agctccactt
     2761 gaactttgtt cacaagtttc acaggcatca aggaatgttt caccaatcac ttcacttgca
     2821 taggcagcag cctcgcttgg atttttccat tccgtacaaa gcataccatc acagcttgca
     2881 ataggtatat ctcctttttc taatggtcct cgtcctaaag cgaggttata tccggctcca
     2941 acaatgtcag caacgatagc cattggtttt tgatttttac caccacgttg ttcgccacct
     3001 acccaaggga tgcctttttc agcatctttt ttatccattt tcttcttggc tgccattgca
     3061 tcaggctctg tttcagcaat ttcagcggct cggtgtaatc cggccatctt tgctaattta
     3121 ctgtccattg ctaaatcagc aagttggtta gacatggctt cgcaactggt tttgaagttg
     3181 ttgaagtcaa gttttccttg atatagacca ttagaaagaa tgtcatacag ttgaggattt
     3241 gctcgttgga taatcatcgc cgggaggctg gcaactgcac cggttgctga ctcaataata
     3301 ttgccataaa gatctttaaa accttcagta ataccattaa gctggttttt aatggaaagt
     3361 ttaatatcaa agttgccaca agttaaattc gatttccagc caatgccaat cccatattga
     3421 tttggtctgc cacgggaagc tggtgcggaa atggcactac ctcctccaat ggagtagtgc
     3481 atataatcag aaaggacagg gtagtattcc gtgagagcgt tattaccaga aacgcctaga
     3541 ttaccagtcc tatagcctgt tgtattttca ataaaattac taatgctatt gccaacatta
     3601 acggtattac tatttgcgta tccgctcatg gttgtgagca ttatacaagc ggttagaaat
     3661 ttgagacttt ttgctttttt catttattta tcctaatagt gctgataatt taatgagtat
     3721 gtgtactttt ccagtccaca tgacctaaaa aaacttgccc ttgtttttta cagcaagaat
     3781 agggcctcca taatgcccag ctgtaattct cagtattgga gaaactatct gaatgggtag
     3841 cccaatcacc actgtgcgga aagactttag ggtaggattc ggaagtaaat accttaactg
     3901 ttacatctga gggtttatta gcaggactag cacttgccat agctgaaagc agtagtagtg
     3961 gtaaatagta aaatgtctta gcttgcataa atgctccaca aatagagtaa ttcacgttta
     4021 ccttaaaaga tgatttggtt agaagaaatc ggaaattgtt ttttggtttt ggagagtttt
     4081 tgttagtata taagttaatg taacaaggga gagtggatgt atgagcaata gaatacctaa
     4141 agcctgttat gcttacccaa aatcgccgaa caacccgttt aatagattgt cggttatcaa
     4201 tctataccag ccgaaatgtc tcccagcatt ctgaaaggga actctgtaaa attacaggaa
     4261 tgccacctaa acaataaatg gataatgcca gccactttat ccgttgtatt ttgtcacatg
     4321 cgtgattgca atgtcataat attacccgac ttggggatat tatgacattg caatcattgc
     4381 tcacttttct tagcctgagc ccacaggtga ataaagggtg ccgtttgtgt cctcgatgat
     4441 gccacagata tgccgattaa agaccacaag gtaatcgggt aaattacgaa cgaaaatatc
     4501 aacattgtca cgaaggtgct gctattttca atatagtaac ttatattggt ctaacttaaa
     4561 tttcatttat tcttcaaaag tacaacaccg ttggtaagtg atttatcaac ggtgttgtca
     4621 tttccaattc tctaaaatca aaattcaatt ctcaattaac tttatgattc aatatgacta
     4681 aattatcctc aatttaagac gctgtatata acagcactta ataagtcgca taactcctga
     4741 gaagcgacgg ctatccttag aggtagttga gttattgcca aaatgtctcc tagcattctg
     4801 aaagggaacg ccacttttgt gggaatgcca cctaaaccct ctaccatctc agtgaagcat
     4861 cattgagatt tcattttact tccacctcgc ggggaacatt tttcccgtgt tgggcaagga
     4921 tgtttctccg cttttttaca tttggagaaa caaactatga caactcaaac ttctactcaa
     4981 aaaaattact tcaaccttca tacaacaggc attggctatc taaacgatat tcgtttggta
     5041 gagcctaaaa aaggaaatcc tttttatgcc tgccgtatag cagctctggt tggcgaatct
     5101 gactctcctg agtacagata ttttgatatg aatgtagtcg gtaaagagac tgaaacactt
     5161 atcaaaagat gccaaaaagc agttagtgaa gagaaaaaag tgcttgtgtc atttgtaatg
     5221 gctgatttgt ggttcgatac atttacttac tcaacagata gtaaattcca caaaaaaggc
     5281 gataccggtg tatctgtaaa aggtcgctta atccgcatca aaatgattaa aattgatggg
     5341 gaaatagcct accaagaaaa gccaaaatca gatgagcaat ctgagtaatt ttacctaagc
     5401 ccgacatttt atgttgggct ttattactcg atgtacaaga tttgcgcgta acttttaaga
     5461 ccccagatgg cgatgttact gccgtcaatg atctgacttt ttctttaaat gccggtgaaa
     5521 ccctcggcat tgtcggcgaa tctggctcag gaaaatcgca aaccgctttt gctctaatgg
     5581 ggctattagc agataacggg cgaatttcag gatcagcaaa atttaatgga caagaaattc
     5641 tcaacttgcc tgaaacacaa cttaaccgct tgcgtgctga acaaattgcg atgatcttcc
     5701 aagatccaat gacctcgctg aacccttata tgaaaatcgg cgaacagcta atggaagtac
     5761 tgatgttgca taaaggcatg gatcataaaa ctgcgtttga agaatcggta cggatgttag
     5821 atgcggtgaa aatgccggag tcacgtaaac gtatgaatat gtatccgcat gaattttccg
     5881 gcggtatgcg tcagcgtgtg atgattgcga tggcattact ttgccgtccg aaactcctca
     5941 ttgcggatga acccacaact gcgctcgatg tgacggtgca agctcaaatc atgaccttat
     6001 taaacgaatt aaaaagcgag tttaataccg ccattatcat gattactcac gatctcggtg
     6061 tggtcgcagg aatttgcgat aatgtgttgg tgatgtatgt aggcagaacc atggaatacg
     6121 gcaccgctga gcaaattttc tataccccaa gccaccctta ttctatcggc ttaattggtg
     6181 cagtgcctcg cgttgacgga caggaagaag aactcattac tattccgggt aatccaccta
     6241 acttattacg cttaccgagt ggctgtcctt tccaaccacg ttgcgttcat gcaactaaac
     6301 agtgcctcaa agcaccggcg ttaaccttgt taaatgatca acgtttacgc gcttgttttg
     6361 tccctgccga gcaattaatc cgaggtaacg catcatgaac acagagaaaa aagtgatcct
     6421 agaagtgaag gatttaagcg ttcatttcaa catcaaagat acgaaatctt tattctttgc
     6481 taaacaccaa actttaaagg ccgtcaatca tgtctctttt cagttatacg aaggcgaaac
     6541 cttaggtgtg gtcggtgaat cgggctgtgg aaaatcaact ctcgcacgcg cgattattgg
     6601 cttagtggaa agctctggcg gtaatatttt atggctaggt aaggagttaa ctcaacaaag
     6661 tgcgaaagaa tggaaaacga tccgtagcga tattcaaatg attttccaag atcctttagc
     6721 ctccctgaat ccacggatga ccattggcag tatcattgcc gaaccattaa aaatttacca
     6781 accccattta accgcggaag aagtgaaaga aaaagtacgc gcgatgatga tgaaagtggg
     6841 cttattacct aacttaatca atcgctatcc acatgaattt tcgggtggac aatgtcagcg
     6901 tatcgggatt gcgcgcgcct tgattgtgga accaaaactc attatttgcg atgagccagt
     6961 gtccgcctta gatgtttcaa tccaagcaca agtagtgaat ttattgaaat ctttacaacg
     7021 cgaaatgggg ctatcattga ttttcattgc acacgacctt gctgtggtga aacacatttc
     7081 cgatcgtgtt ttggtcatgt atcttggtaa cgcggtggaa ttaggtgact atgaacaagt
     7141 ctatcacgat actaagcatc cttataccaa agctttgatg tctgcggtac cgattcctga
     7201 tccgcaatta gaacgcaata aacaaattca attgcttgaa ggcgatctcc cttccccgat
     7261 taatccgccg tcgggctgtg tgttccgcac ccgttgccca ctggcagatc aacactgtat
     7321 tgcagacaaa ccgctcctca aaggacgaga taatcacgtt gttgcttgtt ttaaagccga
     7381 gtaatacaca caaccgcaca aaaaagtgcg gttgtttttt tgcgaatatt cacagtcaga
     7441 ctttcgtgat actttcgctc tgagataagg attacgatac agagaagtta ttcaacaatc
     7501 acacgtgcat tgatcggttg cactggacga ttattgtgtc ctttcatcaa ggtcgcaaac
     7561 gcctcaactt gagattggct aatgttgtca tagtgtttta acactaacca atttacacct
     7621 tcagaacaag gtggtgtagt taatgacccg ctgaaacgat agtaatcgcg ttttttcgga
     7681 attaatgttg ctgggtcaaa agcggtacta agcgtatatt tctcccctgc tttttgcggg
     7741 aagttttgcc aaattggggc taaccattgg ttttcacttg ataatacata gagcacgcca
     7801 agcacagcaa gattcccttc attgtctgcg tgtacaaaat gtgcttccat cgggaaggat
     7861 ttacctcaaa ttaagttttc actcggcaca tggaaatgga attgtttaag ggtaaaagtc
     7921 tttccattaa gctgcatgcg attacttgcc tctttgaaat ccacttgaat agtatgccca
     7981 ttattgacaa tctccacatt ggaaggtcga taatccagct taatcggcgc taacttacca
     8041 tcaatcgtat gcttgatatc tattggtgtt tggtttttac cttcgccaca aatacggaat
     8101 ttgggtgaaa gttcagccca atgttctggc gattcgtgtc cggtgtatcc ccaatgcgtg
     8161 tgcgtttctt ctttcttaag ggggcttgta cacgctgtca atgctaatgc acctaacgta
     8221 agcacaaaaa ggtttgattt tttcatagcc tagctcctga ttaaaagaga tgaattgatg
     8281 agacaaccta aactcaatga tgccttaatc cgagacgctt tcatcttagg caaaacaaca
     8341 ctccatttca agtataactt gctcaagaat atatcttaga ccgaaatcaa atccattatt
     8401 tcaaataagg tattaggcga gtatttctct aaataacgac gtaaaaaatg ttgtgtttct
     8461 tggctaatga cttgatctgt ttccggatac aagttgtata tcacagcatg cacacttact
     8521 cttttggagt tgagtacttg taaactcaat aaggtatgat taatactacc tagcttgcca
     8581 gaggtaacta aaatcacggg gtattgatgc tgacaaagat aatcaagggt ggtttcttcc
     8641 tcattataag gtacacacaa gccgcccgcc ccttccaata atacataatc atatttttca
     8701 cacaaaagtg cggtgcaggt ttcaattttt ttacgttcga tcgtgcgcgg ttctaatttc
     8761 gcggctaaat gcggtgagca aggataatca aacacgtaag gacaagtgat accttgctta
     8821 tcttcttctg taagctcaat accttgtatt tttcggtgta tgagtaaatc ttcggcaatt
     8881 cctcggcagc ctgtttggat catcttttgc gtgatgacac ttgcgccttg ttgcatcagt
     8941 ttcttggcgt accaacctgt ggcgatggtt ttgccaatat cggtgtcgat gccagtgata
     9001 aaaaaaacct ttgccatact ttttccttct aagattaagt taaacgcgcc agcacataca
     9061 tcggcgtgta agtgagttct actttgtgtt gtgcgttacg gtaatgttgt tgatattgtt
     9121 ggcaaaaggc gtgcaattgc ccttttgtcc acctttgctg ctgtgtggca gtaacgcctg
     9181 tttgtttcaa atgttttaac accgctaagg gatcatcaaa gtgcaacaca atctcctcgt
     9241 gttcgagggc taaaatctca aattcaggca ctagccactt ttgccagtcc tcaagacgtg
     9301 gataagttaa ccccacaccg gtgaggtgtt tgatctgtgt taaattctcg ggcgtgaaag
     9361 tactgaataa caaaaatccg tgctttttta agcgcacttt acaacgcgca ataaaacccg
     9421 ctttatcttc aaaccattgc accacggaag cactggcaat caaatcatac tgctgcggaa
     9481 agggaagttg ttccgcatcg ccacaatgga agtgaaaagg ttggggcaac actgattgca
     9541 gatgctctcg catatcgcaa aggtcattca gctcccagtg ttcaacctgc aactgtgaca
     9601 ttaattgctt cgttaatcca ccagtaccac atccaatctc taatgcacgt tggaatgctt
     9661 gtctgtcgat atacgacaat aaactaagca aacgttggtg aatctgctgt tgtgctctcg
     9721 cttgctgatc atagttcgat acagcggcag aaaaacgctg tttaatgcgt cctttatcaa
     9781 tacgatccat gtgctacaac caacaagttt cccaatgggt gaagtgagga aacaacaaat
     9841 gctcccctgc gatttctgtt attgcacaac gatcctgcca ataagcccgc tgattttgtg
     9901 cagggaaaat tttatctttt gagccgacaa tcgccttgct ccacgagatt aaatctgtac
     9961 ggtgatcttg ttgtaaaaag gtataaagtg cggtcagttc agcatgaatt tcctgtaatg
    10021 tgggacgcat ggaatagtgc tgataatctc ttaacagcgt ttttgaacca caaatacgac
    10081 gttcaaattt agtccgatta tcttcattta aaccagataa cgtgccagca aaaatggctt
    10141 cgggaatacc atattggtca tcacaaggta agcccgtgcc attgatcgcc gtagcagata
    10201 gcagtggata accttgcatc acacgctccg ctacccacac gcccattgac catgccacca
    10261 cgcgaatatg ttgataagcg gaaaaatcaa catcgcaatg cagatctcga taatcatagc
    10321 aaaggcataa atcataattt tccggcagaa tcaggtgctc gaccacgctc ggcggtgtgc
    10381 cccaccctgc aaaatagacg atcagattgt cgccttgctg tgaaatatgt tgtgttttca
    10441 ttcagcaagc tcccgtaaac aagcaataaa ttgttccact tccgccactt gcatatctgc
    10501 agtcagtgaa aaacgaatac gagaggttcc ttttgggact gtcggcgggc gaatcggtaa
    10561 gcaataatag ccttgttgtt gcaaacgttg cgccgttctt actgtcagtt cgttatcgcc
    10621 caaaatataa ggtacgatac aactttcact tggcatcggg acttgaaaaa tgtcaacaat
    10681 cgcttggcgt aaatgttgac taagctgagc aagatgtgcg cgttcggctt gcaaatgtgg
    10741 taattgttga aagacaaaat gcgtccatgc cacattaaac ggcggaagtg ccgtggaaaa
    10801 aatcaatggg cgcattttat taaccaaata atctcggatc acttgatcgc aaatcacata
    10861 agcccccata gagcccaacg ccttgccaaa cgtaccgact aaaatatcaa tttggttgat
    10921 acagccttgt tgttctgcta accctagccc cttctccccc aatacgccta tcgcatgggc
    10981 ttcatctaca tataacatca cttgcggata gcgctgtttt aatgcgacca actgggtgag
    11041 gtctgcacag tcaccatcca tactaaacac ggattccgtg accacgataa tccgctcaaa
    11101 agtgcgatca tttttttgca aaatttgttc aaggtggacg taatcatgat gacgaaaacg
    11161 cacaaactca cattgtgcca agcgaatgcc atcaatcata ctggcatgta ccagtttatc
    11221 cgccacaatc agcgtttttt tgtccgctaa agcaggcaaa atcccaatat tagcatgata
    11281 accgctatta aatagcaagg cagtttctcg tccaaatgcc tgcgccatta agctttctag
    11341 ctcatcataa atcggaaaag agcctgttaa taaacgggag gaagaagaag tcaatgcagg
    11401 gagttgatct tggtattgcg tgaaaaatgc ctgacgcaag gcttcgttat tggctaaacc
    11461 taaataatca ttggaggaca tattcagcat cgtattgtcc tcacgttgaa taaaacgccc
    11521 tcggtgaatt agttggggca gttggcgaaa ttgattctgc gcctttaaat cagctaactg
    11581 ctgctgataa tacctgatca tagagattcc ttatgtgcat attcttcttg aagggtgcga
    11641 attgtgccat gaattaattg agacaattga tccgatgaga tgatatacgg tggcatcaaa
    11701 tacactaatt tgccaaatgg acgcacccaa acgccatttt gcacaaagcg tggtggtaaa
    11761 cttgccatat tgacaggcgc cttcatttca atcaccccaa tcgctccaag tactctcatt
    11821 tcagcgacac aatctaaggc ttccgcttgg cgcaattctt gacgtaattg ctgttcaatc
    11881 tgttgaatac gttgttgcca agggcttgcc aataacaatt tgatactttc tgctgctacc
    11941 gcacacgcca gtggatttgc cataaacgtc ggaccgtgca taaaacattt tgcctcgcca
    12001 gaacaaatca cgtctgctac cgcttggttg gtaatggtag cggatagagt taaatacccc
    12061 cccgttaaag ctttaccgat acacatcaca tccggcacga cattggcatg ttcacaagca
    12121 aataatttgc ctgtacgccc aaatcctgtg gcaatttcat caaaaatcag caaaatgccg
    12181 tacggttcgc ataaggcttt tgcttgcacc aaatactcag gggaataaaa atacatacca
    12241 cccgcccctt gcactaccgg ttctaaaatt aaacccgcaa tctcatcacc atgttgtgcc
    12301 aataaatcct gtaacggttg catcgcttcg ggttgccaag cttgcccaaa ttttaccggg
    12361 ggttgcggta aaaaatattg cacgggtagc cctttggcaa acaagctgtg catgccggtc
    12421 acgggatcac acacggacat cgcatgccaa gtatcaccat gatagcccga acgaatcgta
    12481 gcaaatttat agcgctgtgt ttcgccttta gcatgttgat attgcactgc cattttcatc
    12541 gccacttcca cggcgaccga accactatcg gcaaagaaaa ttttatccaa actttccggc
    12601 aagatgttga ccagttgctg cgccagttct accgctggtt ggtgcgttaa tccaccaaac
    12661 atcacatgac tcatttgact cagttgttgc gtggcagcgt ggtttaaacg ggggtgatta
    12721 tagccatgaa tcgctgacca ccacgatgac atgccatcaa tcaactgctg accgtttttt
    12781 aactggatat acacaccttc ggcacgttct actgcaaata agggaaaatc cgcatttaac
    12841 gccgcataag ggtgccaaat atgttgtcga tcacattcta aaagttgctg ctcattcatc
    12901 gtttcacctc ggttgtgaat cgccctttca actggcgtaa attcacgcaa atacttacat
    12961 aaacggaata acttgttata atcgccaagc atttggcttt tcaagcccat tattctaact
    13021 taaaaagatg atttattact atgaatatat tagaaaaaaa agcacaactg agttactggc
    13081 aacggattaa aattgccttt caatatgtga tgccacaact ttatttaaca cgtcttgcag
    13141 gctggtttgc aaaacagcaa tggggtgctg tcacacattt tgtgattaaa ttattcgcga
    13201 aaaaatacca tgtggatatg agtgaagctg caaaaccaaa tttcagcgac tatgcgagct
    13261 ttaatgaatt ttttatccgt ccattagcgg acaatgcccg tccaattaat caaaatccta
    13321 ccgcactttg tttaccggca gatggtcgta ttagtcagtt aggacacatt gagcaggatt
    13381 tattgctaca agccaaagga cattatttca gcttgaacga tttgttagct ggcgacgagg
    13441 cgctcgctca tcattttaaa gatggcgaat ttgccaccac ctacctctca ccacgcgatt
    13501 accaccgtgt gcatatgcct tgtgatgcca ccttatgcaa aatgatttat gtgccaggtg
    13561 acttattctc agtcaatcca tttttagccg aacacgtgcc aaacttattt gcacgtaatg
    13621 aacgcgtgat ctgcgtattc gataccgaat ttggtaaaat ggtccaaatt ttagtcggcg
    13681 caaccattac cgcgagtatg agcaccgtgt gggcaggtgt gatcaacccg cctcgtccag
    13741 aaaaaatcac cacctgggcc tatgaaggag aaagtgcggt caaattactg aaaggacaag
    13801 aaatgggagc ctttcaattg ggctcgacgg tgatcaattt atttgaaaaa gatcgtgtgc
    13861 aactggcatc tcatttacaa gtggatagcc cggtacgtat gggtgaaatt cttgcccacc
    13921 aaaaataatt tttaaccaca ataggaaaaa caatgagtca acaatttttc gaccaagtgt
    13981 cattagaaag ccaacttgaa gtgagcgccg aagccgtcgc gaaagggatc tttgatgtgt
    14041 taaatcaaaa tccaccagca cttgagttaa atgaagtgag tcatgcccta cagactttgc
    14101 aacaacaagc gaaattcaaa gaaattgaag ccgttggtgc acaattctta gctgaaaacg
    14161 cgcaaaaagc gggggtaaat actacggaat ctggtttaca gtatgaagtg ttagtggctg
    14221 gtgaagggca aattccggca cgcgaagaca aagtgcgtgt gcattacact gggacattaa
    14281 tcgacggtac cgtctttgac agctcagtaa aacgtggtca acctgcagaa ttcccagtaa
    14341 atggcgtgat cgctggttgg attgaagcct tgtccatgat gccagtgggt tcaaaatggc
    14401 gtttaaccat tcctcacaac ctcgcttatg gcgaacgtgg tgctggtgcc tccattccgc
    14461 cattcagtac cttagtgttt gaagtcgaat tattagccat tctttaaagc taaacgctag
    14521 acataaaaaa gtgcggtcat tttccgcact tttttatgtc tagcgtttat cgtttcaagc
    14581 cttgctgata gccgctgttc cacgaatggc ggaacttgtc cggcacagcc ttgcccgttt
    14641 gttcttcaca gtaagccgtt cgttgaatca acattttttg ttggtgttct cgaaatgatt
    14701 ttcccacacg atagccgtcc aaataccaat catcattatc ttgacatgcc atggtattaa
    14761 tccgttttgt attccccgtc actgcaaaag atttgcctgc ctcaatacgt tgcaccgcat
    14821 gttcagagta tgaagcacag ctcaccagcg aacctagtac actgaatatc aatactgctt
    14881 tccaattcat cttgttacct ttctttttct gatttataac acaatcatat cgtctcggtg
    14941 taccgcaacc gccccatatt cataaccgag aacctgttcg atatcttgcg aatgtttgcc
    15001 ttgaattaaa tggagcgcat cgctgttata acgtggcatc cctaaggcaa catccttgcc
    15061 ttgctgagta cgaattttta ccacttcacc gcgtgaaaag cgcccttcca cgtttacaat
    15121 cccagcaggc aataacgatt tatgttgtat taacatcgcg ttttccgccc ccgcatcaat
    15181 ggtaataata ccggctgacg gcgccgcata tagccattgt ttacgacttt ctaagcgatc
    15241 tgcttgcaca ctaaatttgg tgccaatggc ttgcccataa gctaagtcca caatcacatt
    15301 cgggcgatta cccggtgcaa taatggtttc aatgccggag cgggttgcca catccgcggc
    15361 actgattttg gtggacatgc cacctgtgcc taacgaggtg ccacttccgc ccgcaatcgc
    15421 gcgaatatga tcggtaattt tgtccacgtc ggcgatcaat ttggcgtctg gatgtttgcg
    15481 cggatcacga tcaaataaac cttgctgatc agtaagcaaa tacaactgtt ctgcttgcac
    15541 caaaattgcc actaacgcgg ataaattatc gttatcgcct actttaattt ctgacgtagc
    15601 gacagcgtca ttttcattaa tcactggaat aatctgattg tctaataagg cgcgcaaagt
    15661 atctctggca tttaaaaaac gttcacgatc ttcaatgtcg gcacgggtca ataaaatctg
    15721 cccaatatga atatcataaa tggcaaacaa tttttcccac gtttgaatga gctgactttg
    15781 tcctaccgca gccaataatt gtttcgaggc aatcgtcggt ggcaattgcg ggtgatttaa
    15841 ataatgacga cctgccgcaa tcgcccctga ggtaacaatc actaaacgaa agcccgcttg
    15901 atgaagctgt gcgagctgac gcacaatatc tatcatatga ggtaaattta acttcgccga
    15961 tccttgcgta agcgtactgg ttccaaattt tacaacgagt gttttgtcga ttttcatctt
    16021 ctctatcttc ttatttttgt cgcacaaaat tgaagctaac ttaccattaa tcatcagaaa
    16081 aatcatctcg tttacttgct attttctatg atttagcaca aattttttct cactaaaagg
    16141 catataataa agcttcttga tttttcagct aggaacccga ttatgacctc aacctcttca
    16201 caagaaacgg agcggcaacg agaaatcact cgcctttgtg ttcaagttgc ccaactctta
    16261 tacaacatgg tgcagaaagt gccatcgttg tgcaaatggc acatcgctta ggcttagccc
    16321 tcggtgtaga tagcgtagaa tgtgccctca cgccaaatgc cattattctt actacattag
    16381 cccaagacca ttgcatcacg acagtccgta aaaaccaaga caaaggaatt aatatgcaag
    16441 tggttaccga agtgcaacgt attgtgatta cagcagaacg taaaatctat gatatgcaac
    16501 aagtgcatgc caaactggct cgcattaaac cgcttaaata caatcgctat tttgtgatgt
    16561 tgatgattgg cgtatcctgt gccagttttg ctcatttatc tggtggggac gcactagttt
    16621 cattggttac atttctcgcc gcaacactcg ccatgtatgt tcgccaatca cttgccgcaa
    16681 gacactataa ccccttaatt gtatttgcgg tgaccgcctt tgtcgcctca ctaattgcgg
    16741 gtatcgcgtt gaaatataac atcggcaatc agccccaaat tgccttggca tccagcgtat
    16801 tattgctcgt tcccggcttt ccactgatta atgcactcgc cgatatttta aaagggcata
    16861 tcaatatggg gattgcccgt tgggcactcg cgacaatcct cacatttggg gcatgcttag
    16921 gcattgtatt tgcgctgagt ttattcttag aggaaatctg tatgctaaat aaattcattc
    16981 aagatgaatt tctacggcta gatcaacgtt atgcagcttg gtatcaaagt gaagaaacgg
    17041 atgaagttgc cagaatgggg attcaagaaa gtgagcggat tttgaaaatt ctgtatgcac
    17101 tgaaatataa cgaagaccct atgcaaaatg gtttaggcta tattgcattt atggcatcaa
    17161 aaggccaata atttacttat ctcaacaatt tacccaccgg ggaaactcct cgatggcgtt
    17221 tcccctactt tataggagaa acgctatgac tattaacact tatgcaaaat ttgcacctac
    17281 cgtttttgtt gcaaaatgct ctgaatcaca taccaaaggt gaaattatta cgctaaccag
    17341 caaatatggt aatgaaaccg aggttcaagt acataatctt gttaaacaag atggcgagca
    17401 ttatttttat tcatttactc gttgtgatgg gatggatagt cagtcatttg ctcaacaaaa
    17461 agcagaacgc tatcaaggct atgcagataa tgcagccaaa cgtagtcaag attgggtaaa
    17521 tgccgctaat gaggggtgtg attttttgag tttaggtgag ccaataaaaa ttggtcatca
    17581 cagcgaaaag agacaccgta accttattga acgtaatgct cgccgtatgg acaatgcggt
    17641 tgcagaaatg aacaaagctg caagttatga atctcgtatc gcatattggg aaaaaatggc
    17701 aggaaaaatt gacctgtcta tgccggaaag tctggaatac tttaagtttg aattggataa
    17761 agccaaaaca aagcacaaag aattgaagga caaccccgag aaacgagagc atggttattc
    17821 actgacttat gctaaaaaag cagttaatga acttgagaaa aaagtaaaat tagctgaatt
    17881 actttgggca taattattta caaaggagat gacgatatga atcgacaagg tatttatatt
    17941 aatggcaaac aggtgtttga ttcacaaggc gaagatattc aaagcattgg attttttggc
    18001 tgcaatattc aaacggtcgt aggcataaac aaaggaagta ttttagtctc gtccaatagt
    18061 aatcaattat tggtgaatgg acagtcgatt gaattaggtt ctgagccagt cctcaaaatt
    18121 gaggttttgg gcaatgtgca gaaactgagt gccggtgccg cagatgtctc tattacagga
    18181 gatgccggca gtgttgacac agttagcggt gatgtctcta ttaagggaaa tgttgcctct
    18241 tatgtgaaaa ccgtgagtgg tgatgttcgc tgtcgtgcta ttaccggttc ggtggaaacc
    18301 gtctccggtg atatttatcg ctgatattta ctcatcttat tatttaccac cctattggga
    18361 agcaattttc ccaaggtggg cagattgttt cccattttta ttttgaattt ggagaaacat
    18421 gatgaccact attaaccttt cacaacaaga acgtgagtta gttgaatttg tctggaataa
    18481 ccgtaataca ccttggtttt ttcactgtag tgtatcgaat gtgtcgagaa ataatacctc
    18541 tcggcaaatt gctgtatgtg tcattaagga taatcaattg attagccttg atgaattgat
    18601 agcaaaatta tgtggttata aactcagaca aaacggatta tacgttactg ttcataatat
    18661 ggatgctgtt tttgatacct tatatcgctt tatgtgcaag ctaaatgatg agatggaggc
    18721 aaatgaaaat gtttgccctt atttatcatt agctcactat gaagtgtttt gattggtatc
    18781 agaactatcc accctgtcgg gaaacaattt ttccgatagg gcagattgtt tcccactttt
    18841 attttgaatt tggagaaaca taatgataga cacctttttt gaccttgacg acacctcatg
    18901 ctatttaggt aactgggagg atatactgaa agaatatgat gattgtcttt cagttgaaga
    18961 tttttggcat tccgctaaag aatttgatac cgtacctcat tttggcaacc tataccagga
    19021 gcgtgtcatc cttaagttga ttgctcgatt ctgtattgag ctgaatattg agcaagattc
    19081 aggtttagtc gaatttgatt attatatcaa tgcaatagat acgcatttct atattaatag
    19141 ccaaagaatc tgtgatatag atgattggaa tgaaatgtta gataagattc gtgaagaaat
    19201 gacgccggct aaattagttg cctaattttt gcaaattttt actaaaaatg acgcttactg
    19261 tcgtcttaat tcacccactt ggggaaatat ctccccaatg ggatgacatt tcccctcttt
    19321 ctgtttagga gaaatgtatg acttttgagc ttggtagagt atgtgcaact cgtgcagttg
    19381 ctgaatgttt caatcaacat acattagttg atctacttca tcgctactgc agtggtgatt
    19441 ggggaaattt gtgtgataac gacaagaaag ccaatgtgaa agctattgaa cgcggaggac
    19501 gcattttagc tcgctatgat gtggaagatg aaacacttta tgtaatcaca gaggctgatc
    19561 gtagttacac tacaatttta tttccttatg aatattaatg gagcttccat ttatacccta
    19621 catttttatg ttatcaaacg ccgtcaaatg atggcgtttt tctattttat atctttcgat
    19681 tttatagttg tttcaatatg caat
//
LOCUS       DANLXK010000038        19696 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.038, whole genome shotgun sequence.
ACCESSION   DANLXK010000038 DANLXK010000000
VERSION     DANLXK010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19696
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            7..873
                     /gene="prmC"
                     /locus_tag="PXD88_001115"
     CDS             7..873
                     /gene="prmC"
                     /locus_tag="PXD88_001115"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL6280702.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            882..1748
                     /locus_tag="PXD88_001116"
     CDS             882..1748
                     /locus_tag="PXD88_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL6280703.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            1838..2692
                     /gene="kdsA"
                     /locus_tag="PXD88_001117"
     CDS             1838..2692
                     /gene="kdsA"
                     /locus_tag="PXD88_001117"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL6280704.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            2913..3860
                     /locus_tag="PXD88_001118"
     CDS             2913..3860
                     /locus_tag="PXD88_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL6280705.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            3958..5130
                     /locus_tag="PXD88_001119"
     CDS             3958..5130
                     /locus_tag="PXD88_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL6280706.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            5147..5830
                     /gene="lolD"
                     /locus_tag="PXD88_001120"
     CDS             5147..5830
                     /gene="lolD"
                     /locus_tag="PXD88_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL6280707.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            5827..7092
                     /gene="lolE"
                     /locus_tag="PXD88_001121"
     CDS             5827..7092
                     /gene="lolE"
                     /locus_tag="PXD88_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL6280708.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(7167..9098)
                     /gene="thrS"
                     /locus_tag="PXD88_001122"
     CDS             complement(7167..9098)
                     /gene="thrS"
                     /locus_tag="PXD88_001122"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL6280709.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(9265..10614)
                     /locus_tag="PXD88_001123"
     CDS             complement(9265..10614)
                     /locus_tag="PXD88_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280710.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLIISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(10889..11380)
                     /locus_tag="PXD88_001124"
     CDS             complement(10889..11380)
                     /locus_tag="PXD88_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL6280711.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            11461..12228
                     /locus_tag="PXD88_001125"
     CDS             11461..12228
                     /locus_tag="PXD88_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL6280712.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(12219..13013)
                     /locus_tag="PXD88_001126"
     CDS             complement(12219..13013)
                     /locus_tag="PXD88_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL6280713.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(13074..14660)
                     /locus_tag="PXD88_001127"
     CDS             complement(13074..14660)
                     /locus_tag="PXD88_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL6280714.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(14846..16699)
                     /gene="dxs"
                     /locus_tag="PXD88_001128"
     CDS             complement(14846..16699)
                     /gene="dxs"
                     /locus_tag="PXD88_001128"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL6280715.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(16744..17556)
                     /gene="suhB"
                     /locus_tag="PXD88_001129"
     CDS             complement(16744..17556)
                     /gene="suhB"
                     /locus_tag="PXD88_001129"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL6280716.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            17737..18771
                     /locus_tag="PXD88_001130"
     CDS             17737..18771
                     /locus_tag="PXD88_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL6280717.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            18781..19665
                     /locus_tag="PXD88_001131"
     CDS             18781..19665
                     /locus_tag="PXD88_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL6280718.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
BASE COUNT         5909 a         4026 c         4279 g         5482 t
ORIGIN      
        1 taaataatgg attaccgaga gtggctcact tttgctgagc aaaaattact tgaaaatagc
       61 ggggcagatc catacctaaa cgcaaaattt gatgcaaatt tgctattgca agcagtcaca
      121 aaacgttcaa aatcggccat ttttgctttt tcggaaaccc tactttctga aagcgagctt
      181 gcagaattag cggaaaaatt agctcggcgt gccaaaggtg aaccaatggc atatatttta
      241 ggctatcggg aattttggtc gttgccgtta aaggtttcac cggcaacgct gattcctcgc
      301 cctgatacgg aacgactggt tgagttggcg ttggaatatg ctaacaagcg gttaggaaat
      361 cagaaaatgt tgcaaattct ggatctcggt accggcacgg gggcgattgc gttggcactg
      421 gcgagtgaat taggcgagaa agcccaaatt atcggggtgg atttccaaaa tgaggcggtg
      481 caactggcag aagaaaatcg ccgaaactta ggcttaaatc aagttacatt tttacaaagc
      541 gattggttca gttcgcttgc aaatcaacaa tttgatttaa ttgtctcaaa tccgccttat
      601 attgatgaat cggacgaaaa tttgacggtg ggagacgtac gttttgaacc tttaaccgca
      661 ttagttgccg ataataaggg gttgagcgat ttgcaaaaaa tcatcgaaaa tgcaccgctt
      721 cacttaaaac cgcaaggggc gttaatgctg gaacacggct ggaaacaagg taacttggtt
      781 cgagatttat ttgatttaca cttgtgggaa caggtagaaa ctgctcaaga ttatgccggc
      841 aatgaccgag taaccaaagc gattttaaaa taaggcagaa aatggacgat attattgaag
      901 aattgttaaa agagttggaa gatccgaaag taaccatcag cgaaaccgag ctgaaaaagt
      961 ttctttatcg tgaaatttta cgattaacta cgctcattga taagaatgta agtgagcaac
     1021 aagtgtttgg tcagatgtct gcgttggtga aaaaagctcg ctataacgtg aatggcgaag
     1081 gcgatgaaga gagaattaac caattacttc atttagtcta tcgtgaatgg ggctttcatt
     1141 gctactatga agactatttc cacaccgaaa atttgttgct aaatcaagta attcgcaaac
     1201 ggcgtggaat gccggtttca cttggggcgg tggcgcttta tttatccgcc gtattggatt
     1261 tgccgcttta cccggttaat tttccgactc agcttgtgtt acgggctgaa atacaccagc
     1321 cgaacggggc aaccaaagtg cgttttatca acccgtggaa cggtgaattt ctcaccatcg
     1381 aaatgctgaa taaatggctg gaaggagaaa tgggctttgg cgtagaagtt acccctgatt
     1441 tgttaagacg agcagaacca caagagttgc tggaaagggt cgaaactgtg tttaaaatgg
     1501 cacttacccg tgaaggcaaa tatgaagaaa ccttacgctt gattgaatac cgcttggcat
     1561 ttagcccgga agatccgtac gaaatcagag accgaggaat ggtactggca agtatggatt
     1621 gctaccaagc agcattagaa gatattaatt atttcattga ccaatgccct gaagatcctt
     1681 ctgccgaaat tttaaaaatg gaagtgaaag gactgcaaca aaaaagccaa gaaagtgtgg
     1741 tgcattaagc tgagaagtag ccccaaaggg gctgagctat gattaaccta gtacggctct
     1801 gccgtgctag gcagaaaata agaaacaagg actccctatg acagataaaa ttgtaaaagt
     1861 tggcaatatt gaagtggcta atcacaaacc gtttacgctt tttggtggta tgaatgtgct
     1921 ggaaagccgt gatatggcac ttagagtatg tgagcaatat gttgaagtca cgcaaaaact
     1981 aaatgtgcct tatgtgttca aagcctcatt tgacaaagca aaccgttctt caatccactc
     2041 ttaccgtgga ccgggaatgg aagaaggctt aaagattttc caagaattaa aacaaacctt
     2101 tggcgtgaac atcattaccg atgttcacga aatttaccaa tgtaaacctg tggcagaagt
     2161 agttgatgtg attcaactac cagcattttt ggctcgccaa accgatttag tggaagcaat
     2221 ggctcgtacc ggtgcggtta ttaacgttaa aaagccgcaa tttttaagcc cgggtcaaat
     2281 ggggaatatc gtagaaaaga ttgctgaatg cggcaacgat caagtgattt tgtgcgaccg
     2341 tggcactaac tttggctacg ataatctagt tgtggatatg cttggtttcg gcattatgaa
     2401 aaaagtgtcg aaaggttgcc cggtgatttt tgatgtgact cactcattac aatgccgtga
     2461 tccattcggt gcggcttccg gtggtcgcag agatcaagta accgaactgg cacgctccgg
     2521 tatggcgatt ggtttagccg gcttgttctt agaagctcac ccggatccaa actcggcgaa
     2581 atgtgatggt ccatctgcat taccgctgtc aaaattagaa gcctttgttt cacagatgaa
     2641 agcgattgat gagttggtta agagctttga agaaattgat acttccaaat aaactttctc
     2701 cgcattaaat cctttcctac tttctttgct tcgccaaaga aagtaggcaa agaaaggcga
     2761 ccctacttcg ctacttttct tcgcttagtg tgaatgggct taacgaaaaa tttacattcg
     2821 cttcgctcag agtaaatttt cctacccatt aaaacacgct caggtagctc agaagggagt
     2881 tagaaaggta aaagacagaa taggagaaaa aaatgctaaa tattgttttt cttgaccgta
     2941 ccggtattcc tgccactcac gatattcctc gtccgaattt tccacatact tggacggaat
     3001 atgccaccac ctctgccgat caaacttttg agcgggtaaa agaagcggat attatcatta
     3061 ccagcaaagt gttactccag cgtgacttgc tggctaaatt accaaagctg aaattaattg
     3121 cgatcacagc aaccggcacg aacaatgtgg acttagcggc agcaaaagag ttagggattg
     3181 cagtgaaaaa tgtaaccggc tattccagcg ttaccgtgcc ggaacacgtc attggtatga
     3241 tttactccct gaaacatcgt ttagccgatt atcaccgtga tttaattacg tctgaccgct
     3301 gggcaacttg cggccaattt tgctatgtag attacccgat ccacgatgtg cgaggctcaa
     3361 ccttaggcat tttcggtaaa gggaacatcg gggctgaagt ggcacggctg gcacaagcgg
     3421 tcggaatgca ggttattttt gcagaacatc aaggcgcaac tgaaattcga gaaggctaca
     3481 ccgcctttga agaggtattc aaacaagcag atattatttc actacactgc cctttaaccg
     3541 agcagactca aaacctgatt aatgcagaaa ccttagcctt aatgaagccg accgcttata
     3601 ttatcaatac gggtcgaggc ccactgattg atgaacaggc attgcttgag gcattagagc
     3661 aaggcaagat tgccggcgct gcgttagatg ttttagtgaa agagccgcct gaaaaagaca
     3721 accctttaat gttagccgca aaacgtttac cgaatttact gattacccca cacgttgcgt
     3781 gggcaagcga ttctgcggtt acaacactag tgaataaagt gacacaaaat atggaagagt
     3841 ttgtagcaac gggtatgtag cttgaagtag gggctggtcc tgtgccagcc ctaatattaa
     3901 tagaatgaga gggcgggtat aaaacccgcc cctaccaata tcattttaga aaaacagatg
     3961 aatttaaccc ctttttttat tgcttttcgc tattttagat cgaaaagtgc tgaccgtttc
     4021 gggcggttag tcaccaatct tgccagcctt ggcattgtgc tgggcgtaat ggcattggtg
     4081 attgtgctgt cggttatgaa cggtttggaa aatatgcaga aaaccaatct gctatccacc
     4141 ttgccgcacg ctatcatcac ccctcaagag gggcattttg ccaaaggtga aaaactggct
     4201 ctacctgaat ttgccaagca aagtgtggtg attaaccgtg cgaatgtgat tatccaaagt
     4261 tcacaaggca ttaacgccgg tcagttaatc ggcgtggaaa atgccacaga cgatccgttg
     4321 ttagtggcgg aaaatatccc cgcattattg cctagcggtg aatttaaggt agtaattggc
     4381 tctcgtttag ccaataaatt gaacgttacg gtaggcgata agctccgctt aatgatcact
     4441 gaaaacagcc aatatacgcc acttgggcga gtgccggtac agcgtttgtt tgaaatttcg
     4501 ggcgtttatc aatctaatcg tgaagcgagc gaatttaccc tctttgctaa tttagctgat
     4561 gtcgggcgtt tgcttcgcat cagcgaagat caagtacaag gcgtgcgttt atatttgcaa
     4621 gatcctttcc aagttaccga acttagccaa tatttcgatg cagaacgcta ccaaatcagt
     4681 gattggcgtg agcaaaaagg cgaatttttc caagcggtga aaatggaaaa aaatatgatg
     4741 ggcttactca tcagcctgat tattgtggtt gcaatttcca acattgtgac ttcactcagt
     4801 ttgatggtgg tagacaaaca gggcgaaatt gcaattttac aaacccaagg cttaaccaaa
     4861 aaacaagtga tgcagatttt tgtgttccaa ggggcgattg tcggagtaat tggctcgatt
     4921 attggtggtt tgctcggcgt attgatcgcc tacaatttag atcagattat cctgctatta
     4981 aacccgagca tccatctgcc taccctaatt tcaggcacgc aaattgcggt cattgtaggg
     5041 gtgtcgatgt tgctttcact cctttgcacg ctttacccgg cataccgagc ctcaaaaatt
     5101 gagccggcac aggcattgag atatgaataa taagaacgga aataaaatga cagaattact
     5161 tcgctgtgaa catatcagca aattttacga tgagggcgaa cagaaagttc aggtgctaaa
     5221 agaggtgtca ttttcgatga acgaaggtga gctggtagcg attgtcggta gttcaggttc
     5281 cggcaaaagc accctattgc acacattagg cgggctagat cagccaagca ccggtgaagt
     5341 ctggattcga gggcaatctc tgcaacagct cagttcagac aaattagcgt tattgcgtaa
     5401 ccaaaactta ggctttgtgt accaatttca tcacttaatg gcagacttta ccgcccttga
     5461 aaatgtgatg atgccgatgc tgatcggcaa acagaacaaa actgaagctg ccaatcgtgc
     5521 cgagaaaatg ctacaagcgg tcggattagc tcatcgaatg acacatcgcc catcagcact
     5581 ttcaggcggc gaacgccaac gggtggcgat tgcccgagcg ttggttaata atccggctct
     5641 ggtacttgcc gatgaaccga ccggtaattt agaccaaaaa accactgaaa gcatttttga
     5701 gctgattcaa cagctcaacc aagagcagaa cattgcgttt ttattagtaa cgcatgattt
     5761 aaatctagcg aataaacttt cacgtagtct tgtaatgcga gatggcgtgt taagcgaggg
     5821 gagcttatga gtacgccgtt tttcattagc tggcgttacc aacggggcaa acagaaaaac
     5881 aaactggttt cactgattgc tctcttttcc aacatcggta ttgcccttgg ggttgcggta
     5941 ttaattatcg ggctaagtgc aatgaacggc tttgagcgag agctgaataa tcgtgtgctt
     6001 tcggttgtgc cacacgctga actggtttcg tttcaaggca atcagcctca accaattttt
     6061 gatagcaaaa aattagaggc attgataaaa aaatcgcaaa atgtgaccgc tagttcgcct
     6121 tttgtcagct ttaccgcctt aattgaaaat ggggctcagc ttaaaatcgc ccaggtgcga
     6181 ggggttgatc ctaaaaagca agatcaggcc agccaattaa gccaatttat tccacccgag
     6241 caatggcaag cgttcaatca gcaatttcaa gccgatgaag atggcttgat tttaggagcc
     6301 ggtattgcca aagcgttaga agttgaggca ggagacgaag ttacgctttt aattcctcag
     6361 ccaacagaag acggcaaatt agcccagccc ttgcgtttta acctaaacgt aaccggcatt
     6421 ttgcggctag atgggcagct ggatcacagt tatgccttaa ttccactgaa taaagctcaa
     6481 gagctgatgg aataccaagc gaatgaagtg tcagggcttg aaatcagcct tgccaatccg
     6541 tttgatgtac aacagcttga aatgccacaa cttaacggct atacccaacc gctttatttg
     6601 aatacgtgga ttgataaatt cggttatatg tataacgata ttcaactgat tcgcaccgtg
     6661 atgtacattg caatggttct cgtgattggc gttgcctgtt ttaatattat ttccaccttg
     6721 attatggcag tgaaagacaa acaaggcgat atcgcgattt tacggacact gggggcaaat
     6781 aacggtttta tccgccgcat tttcttatgg tatggcttaa tttcaggtat gaaaggggcg
     6841 ttattcgggc tgattttagg tgtaatttta tcgctaaatt taaccgctat tatcaaagcg
     6901 attgaagcat tctttgaggt gaaattgctt tcagacgggg tttattttgt tgatttctta
     6961 ccaagtgaat tacattggca agatgtcgtc tatgtattgg cagccacgat tatcctaagc
     7021 ctttttgcca gcttataccc tgccaaccga gccgctaaat tagaaccggc aaaagtgtta
     7081 agtgggcatt aatcattttc ctattctaat aaaaaagcag ctacccctcg attatgtcag
     7141 aaaggtagct gcttttattt atgttattac tcttcgccta ataatttcaa ctcacgagcc
     7201 ttaatttggt tttttagaat ttcaactaag tctgaaacga ggtaagtacc taagtctgca
     7261 cctttacggg tacgcacaga cactttacct tcggcgattt ctttatcacc gcaaaccaac
     7321 atataaggca cacggcgtaa ggtgtgctca cgcactttga agccgacttt ttcgttgcgt
     7381 aagtctgctt tcacacgaat gcctgcatca gaaagctgtt tcaccacttg ttgcacataa
     7441 tctgcttggc tgtcggtaat gttcattacc actgcttggg ttggggcaag ccaagttggg
     7501 aagaaaccgg catattcttc ggtgataatc ccgatgaaac gttcgatcga gcctaaaatc
     7561 gcacggtgaa tcattaccgg tgtgcggcga ccattatctt ctgctacata agaggctgct
     7621 aaacgacccg gtagagcgaa gtcaagttgc actgtgccac attgccattc acgtcctaag
     7681 caatcacgca atgcaaactc aattttcggc ccgtagaatg caccttcgcc ttcttgaatt
     7741 tcatattcaa gtccgttgtt gcgtaaggcg ttggctaagc ctttttctgc tctgtcccac
     7801 attgcatcat caccgatacg gttttccgga cgggttgaaa gttttactgc aatgttagta
     7861 aaaccgaagg tgctgtaaat gtcgtacacc attttgatac agctgattac ttctgactcg
     7921 atttgttctt cagtacagaa aatatgggca tcatcttggg taaaaccacg cacacgcatt
     7981 aagccgtgta atgaaccgga cggctcgtta cggtgacacg aaccaaattc cgccatacgg
     8041 atcggtaaat cacggtaaga tttcaagcct tgattaaaga tttgaacgtg acccgggcag
     8101 ttcatcggct taattgcata ttcacggttt tccgattggg tagtgaacat taaatctgcg
     8161 tagttttgcc agtgtccggt tttttcccaa agcacacgat ccatcataaa cggacctttt
     8221 acttcttggt aatcgtactc tttcaatttg gtacgcacaa aagtttcaag ttcacggaaa
     8281 atcgtccagc cgtcattgtg ccagaacacc atacccggtg cttcttcttg catatggtat
     8341 aaatctaacg ctttaccgat acggcggtgg tcacgttttg ccgcttcttc caaacgttgt
     8401 aaatattcgg ctaattgttt tttatcagcc caagctgtac cgtaaatacg ttgtagcatt
     8461 ttatttttgc tgtcgccacg ccagtaagca cccgctactt tttgtaattt gaagtggtgg
     8521 cagaaacgca tatttggtac gtgtggacca cggcacatat caatatattc ttcgtggtga
     8581 tataacgcag gcgttgccgt acgttcaata ttttcatcta aaatcgccat tttgtatggc
     8641 tcaccacgtt tctcaaaggt atctcgagct tcttgccagc ttaccgggcg ttttaccacg
     8701 tcatagttgg tttttgccag ctctaacata cgcttttcaa gagcgtctaa atcttcttga
     8761 gtcaaagagc ggtctaaatc gatatcgtag tagaaaccgt tttcgatagt cgggccgata
     8821 gccattttaa cgtctgggaa taattgcttg atggagtgac ctaacaagtg agcggttgag
     8881 tggcgaatga tctctaaacc atcttcgtct ttggcagtaa tgatttcaag tgtgctgtct
     8941 tggctgatga tatcagacgc atcacggcgt tcaccgttta cacgaccggc aatggtggct
     9001 ttcgctaaac ctgccccgat agattgggca acttccatta cagaaactgg gttgtcaaat
     9061 gaacgttgtg aaccgtccgg taaagtaata attggcataa taaatcctta cagtggtaat
     9121 ccatacgaga gattacttgt gttgtttgaa tgaaaaaacc gcctacaagc ggtctttttt
     9181 gattaaaatt ttgcaatttg cttattattt cccttacaag tggggaataa aagcactgaa
     9241 attctagcat aaaacaaaga aaaattaaac tttgctgttt tcagcggccc cttcatcaag
     9301 ctcaatattt tcattttctg tttgtggatc ttgttcaagt atttcaagct gagcctggta
     9361 ctcttgtacc gcttcttcat caaatggaat aagtgcgtcc tcaacaactt caatttcttc
     9421 aagtgggctt gcggttgcaa ttggggtagc atattgcatc tctgctcgtt ccgctttcgg
     9481 aattgatttg gtgcggaaag cacaaataaa taaactaagt gagaacagtc caaaaagtgc
     9541 ataaaagcca tattcagcgg aaaggctcat cgcaaaaccg ataagcggtg gagcaactaa
     9601 cgcccccaca ccatagcaaa acagtaaacc cctgcttact tcaaccgtgt tcatattatt
     9661 cggcaattca tcgttggcac gggcaatgct caaagcatat aagctaaaca gactacagcc
     9721 aaagaaaaag gcgataatat actgtcccca ggcggtcaaa ttttcttgga aaattgcaaa
     9781 taatccggca agtgcggtta aagtggcaat cactgaacaa gctaaaatgg cgttacgtct
     9841 gccaatacga ttcgataata tcgccatcgg catttggctg ataaaaccac cgatcatcga
     9901 gataatcaaa taaagcgaga tttcacttaa tgaaaagcta aacttcagca gaaagactga
     9961 cgccattgta aaaaagccgt ttaccaacat tccgctaata aagctggttg ctaaggctaa
    10021 cggtgaaatc gcaaatagtt taggaatact aatgcgctct cgagccggaa tatcaggctg
    10081 aaccatttta gttaaagcaa ttgggatcat cgacatcaca accaaaatgg tagataagat
    10141 aaaaatgttt cggctactaa gttctaaact taataaactt acgcctaaaa taaaggcgag
    10201 atagaagata atgttataag tggcaagcac tttgcctctg gtatcgacat tggttttttc
    10261 gcttaaccaa ctttcgacta aaagcagcaa gctataatga cagaatccca aaataattcg
    10321 taacacgccc cagatccaca aagtatcaat cataatatga ccgagagcgg cgatagcaaa
    10381 aacagcacag aaaacgctaa atgaacggat atgcccaaca cttgatacaa tgcggtgagc
    10441 aaaaatagtg cttaatgccg ccccaataaa gaaagcagcg ttaagtaaac cgatgatgat
    10501 gtccgttatc cccatttctg ccagtttgat ccctgctgaa tttagaaata aaccgtagcc
    10561 gaaaaacaga aaaaagatac ctgaataaag ggagtaaaat ttagtgctat tcatcaatgc
    10621 tccttcaaac attctgccag tattaaatca ttgtaccgat ttaatacctt ttaggcaaaa
    10681 aagttattat tagcgttgag aaaataactt ttggctattt tgattaaaaa atcaaatgaa
    10741 ggtgattttg aaatgtagta aaaaatagag caatcagaat tgaaaaaggg tttgccgtaa
    10801 caaagccttt agaaagatta gagtttcgag aagaatttgt agcttgggct aaccaaaaca
    10861 cttgctagga gtgctttaag cacaccacct aaaataaatg gatataagcc cgcttgtaat
    10921 actgtgcctt ctggtacaaa gaaagttgag ccaagccgaa agcaaaggtg atcacacttg
    10981 caattaaggc gacaaataaa cttttccaaa aagagtttaa tacgccttta tcgctataat
    11041 agcctaagaa ataggcggtt ggaatatagc ctaataagta tccgcctgtt ggaccaaaga
    11101 aatgatggaa acctgaagca ccgccggcaa agacaggtaa accaatcgcc ccttcaaaaa
    11161 gataaagtaa tactgcagca gttgcggctt tacgacccat tgcaaaacca accacagtta
    11221 aagcaagtgt ttgccctgta atgggtacag ggtacatcgg cacagaaatt tgtgcaaaaa
    11281 tagcaagcag tgttgctcca ataaaagttt tcaaccaaaa tgtagttata ctattggctt
    11341 ctagccaacg tttagtttga attaattgcg tagtgaacat aatcctctcc tttaatatgg
    11401 ttaaaatgtt ctcaaccgat tatataagaa gatgtctttt agggtaagag tgaatttaaa
    11461 atggtaaaac cagtttatat ttattgtgat gaaggtagca gtgaaattgg tgttcaatca
    11521 ctgttattgg cagtaaaaca gcatttacag cgtccggctt atctcatcaa tgccaaacaa
    11581 attattcaaa gcaagttttc cgatggctgt ttattaatca tgcccggtgg agccgattta
    11641 ccttactgca aaaaattaaa cggagaaggc aatcgtagaa tccgccaatt tattgaacaa
    11701 ggtggagctt atctcggtat ctgtgccgga gcttattatg gctgtgctga attgaatttt
    11761 gtagggcgtg actatagcgt aaatggtaat cgagaactag ctttatttaa tggcattgcg
    11821 ggcattgcga aaggcagtct gccgcagttt accaacgggc aactttacga taaaaacatt
    11881 ggtagcaaag cgatagttga agtaacactt gcagagggtg gaaaaatgcc gttttattat
    11941 cacggtggtt gctgttttga accaaattca acaacagtga tttacaaccc gttggcttat
    12001 tatcctgatg gctcagtagc aatgatagag ggagagctag ggcgaggtta ctatctgttg
    12061 tcgggtgtac attttgaatt acaagcggtc gtttattggc aaaaaattgt aaattgctgt
    12121 gaaaatcttg acataaaaac acaagaagaa gcaatttgct ctaattttaa tgtaaattat
    12181 ggctcgcaaa tttggcaaca tctaaagcaa cgactaaatc aagcgtaaaa aaataacctt
    12241 tcgctattct gccaaatggt ttctgcaatc agatttggtg attctgttct taattcacat
    12301 agactattga aagtcactaa aagccgttcc ggtcggttcg gctggccttg aaagccaaac
    12361 accggcatat cgggcgagtc ggtttccagt agtaaacttt caagaggtag tttgcggata
    12421 gcctcacggg ttttgttagc acgttcatag gtaatagttc cccccacacc aattttataa
    12481 ccgagatcga caaaacgttt tgcctgttca tagctgccgg caaagccgtg aaccacaccg
    12541 gttttggtta gttgggcttt tttgaggaac acaaaaagtt gatcgtggct tttacgtgaa
    12601 tgaagattaa cgggtaaatt aaattttttc gcaagggaaa gttgtgcctc taaaaattca
    12661 cattgctttt tccataattc aggggtagaa acttcactta ccgctttttc caaaccgatt
    12721 tcggcaatag cggtacactg tggatcttgt tggcttagca aattttccaa taagattaaa
    12781 tcttgttgtt ggtgctgttg aatatacagt ggatgcaacc ctaatccata caccaaattt
    12841 tccggttttt gtttggcaca agcggtcact tttgcaaaat tttttgcaaa tacggcaacg
    12901 ataagaatgc attcaacctg atgctgtttg gcattctcaa ccaattccgg aatgcttaaa
    12961 ttcaggcttt ctgcgagata gtcgaggtga gtatgagtgt caaaaaatcg cataataaaa
    13021 ccaataaaaa cggggactag attgtcccca tttttagcat tttacgcaag caattagttt
    13081 gttacataag catcttcatc acgagcctca gatggcttga ggaaagcaaa gaagcaaata
    13141 acacaaacta ccgtaatcgc aaaaccgata taaactgata attcataatc taaaccgaag
    13201 ccgattttgt tgttcgcaag gtaagttgca cacacggtag tgataaacca tgcaggaatc
    13261 gagcataccc agtggaattt tttatagcgg tataagtaac ctgcggcagt ccataacata
    13321 accattgcag tcatttggtt tgcccaagtg aagtaacgcc ataatacgct gaaatcaact
    13381 tttgagacaa tgaaaccaag tacgaataat ggtacggcaa tatacaaacg ttttactaag
    13441 gtacgttgtt ctaaaccaaa gatttccgct agttgtaaac gagcggctcg gaatgcagtg
    13501 tcacctgagg tgattggtaa tactacaacg cctaatacgg caaaaatacc accgataaac
    13561 cctaagaagt gtaacgagct gtcatatacc actttagacg gtgaaccggc agagatcgca
    13621 tcttgtaagg cttgtgggtt ttcatagaat gaaagaccta ctgcacacca tactaatgca
    13681 attacccctt cagtaatcat tgcaccgtag aaaataaaac gaccttcttt ctcattttgc
    13741 gcacagcgag ccattaatgg ggtttgggtt gcgtggaaac cggataatgc tccgcaagaa
    13801 atagttaaga atagtaatgg ccaaattgga acatcacctt tcacttggaa gttttgggtg
    13861 aatttttccc acgttaagcc ttgaccgtct gcattcactg tacggaagaa gtcgatagga
    13921 tcagtcgcac ttaagtgagc gctgactaga ccatatacca tacctacaga cataaagagt
    13981 aataatgctc cgaagaaagg ataaattcga ccgatgattt tatcaacagg tagtaatgta
    14041 gcaagaatat agtaagcaaa aatgattaac gtccacacag aaatcacggt tgctttatcc
    14101 ataccccaaa cggttacgcc acctgatgct acagattctt taattgcttc aacatcacct
    14161 aattccattg cactttgggt tgcacctgca atatccatgg tgatggtaga gagtaactga
    14221 gcagggcttg caacgaaaac tacgcctact aataaaagca agatgagcgc cattacgttg
    14281 atgaataact tgactggacg acccaagaat ttccctgcca gatttggcat cgttgcgcca
    14341 ccgttgcgga tacttaacat accacagaag tagtcgtgta ctgcaccggc aaaaatacaa
    14401 ccaatcacaa tccaaagcat tgcaactggt ccgtataagg caccaagtat tggtccaaaa
    14461 atagggccgg taccggcaat gtttaataat tgaatcagcc aaatcttggt tttagacatt
    14521 ggcatatagt caacaccgtc gttcattgca taagccggcg ttgctctttt cgggttaatc
    14581 acgaagattt tttcaatgat ttttccgtaa gtaaagtagc caagaacaag cacggctaca
    14641 cagaaaaaga accacaacat agtagaaatc ctataaattg agataaatga tcatttttag
    14701 cagaactgat aaaggcgtgc cattgtaagt gaggagtgag gataaagtaa aatgaattgt
    14761 tagatttgtg tgaataattt actgaaaatg tgaggttcat caaaaaatcc ctttgttctg
    14821 cgtcaatcaa agggactttt taaagttaaa tatcgaattt ttgaattttc gcttcaatgc
    14881 cttgggcatc taatccaaga tcggcataag cttcagcttg agtagattgg ggaacgaaaa
    14941 agtcaggaat accaagcatt acaagcggtt tgattttgcc gatattttgc aaatattcat
    15001 tcacaaaact acctgcgcca ccttgaatag cattttcttc aagcgtaact aacaactcgt
    15061 gtgaatccgc cactttttga agtaatgctt catctaatgg tttaatgaaa cgcatatcta
    15121 ccaacgtgta gttatgtttt tcagccacaa tctttgcttc atcaagcaaa gcaccaaaat
    15181 ttaaaatcgc aactttttta ccttcacgaa taatgtttcc tttacctact tcaagtcttt
    15241 gcattggctc aagttttacc cctttagcat tgcctcgagg gtaacgaata gcacttggcg
    15301 tattcatcgt gtaagcggta taaagcattt ttcgcatttc attttcatcg ctcggtgcca
    15361 taatggtcat attgggaata caacgcataa aacttaaatc aaatgcacct tggtgagttt
    15421 gcccgtcagc gccgacaatt ccggctcggt caatcgcaaa aatcaccggc aggttttgaa
    15481 tagcaacatc gtgaattaat tggtcataag ctcgctgcaa gaagctggaa taaattgcga
    15541 ctaccggttt gtaacctgcg attgctaagc ctgccccgaa agtcactgcg tgttgttcgg
    15601 caatcgccac atcaaaatat tgttcaggga aacgtttgga aaattctacc attcccgagc
    15661 cttcacgcat tgccggcgta atgccgataa ttttcggatc acgctctgcc atttcacata
    15721 gccaatcgcc aaaaatattg gaataagtag gtgctgcttt tgattttggt aactcggctg
    15781 cggtagggtc aaatttcgga acgccatggt agccaatcgg atcattttcc gcaggtgtgt
    15841 agcctttgcc ttttttcgtg cgaatatgca gaaattgagg gcctttcagc tcacgcatat
    15901 tgctcaaggt tttgactaac tcgtcaatat tatgtccatc aatcgggccg atataattaa
    15961 agcctaactc ttcaaacaaa gtgctttcag gggagaaaat cacccctttc atatgctctt
    16021 cgcttttttt cataaagttt ttgatggtag gcactttatc taaaattttc ttactgccgt
    16081 cacgcactga agtatagagc gaaccagaaa aaatgcgggc aaggtggttg tttaatgccc
    16141 cgacattttc agagattgac atttcattat catttaagat aaccaacata tcggtatgca
    16201 atgcacctgc gtggtttaat gcttcaaatg ccattccggc agtgattgca ccatcaccga
    16261 ttacacagac ggttttacgg ccggcatttt ctttttctgc tgccaccgca atgccaagtc
    16321 cggcactgat cgaagtagaa gaatgcccaa cgcttaacac atcgtaaggg ctttcttcac
    16381 gccaagggaa ggggtgaata ccatcttttt ggcggatagt gtgcatttga tctcggcgcc
    16441 cagtaaggat tttatgtggg taagcttgat gaccaacgtc ccaaattaat tggtcgaaag
    16501 gcgtttgata aacataatgc aaagctaccg taagctctac tacccctaag ccagaggcta
    16561 aatgtccgct agtttgactg actgattcca ataaataggc tcgcagttca tcaactacgg
    16621 tttgaagctg gtctttagaa agtaaacgta aatcttccgg tgagttgatt tcgcttaaca
    16681 gaggatactt cttttccata atgttttatt acccacaacc atcaaataat agatgatatt
    16741 aaattaagct ttgagttctt cggtcaaagt aggctgaatg ctatttaaaa tttctttaac
    16801 cacacggccg ttaccaacaa ccagattacc tgttttcaag taatctgttc cgccaacaaa
    16861 gttagtcaca attgcaccgg cttcacgggc aataagttca ccggcggcga aatcccacgg
    16921 ttttaagccg atttcaaaga aaccatcaac acgacccgct gcaacatagg caagatctaa
    16981 agcggcagaa ccggtacggc ggaaatcagc tactccgtta ttcattaagc cttcaagcat
    17041 atttaaatgt gcatcacgat gtctgatgac tttgaaagga aaaccggttg caattacagt
    17101 gccttttaaa tcacggcgtt ctgcatcaat gcgtaaacgg aactcgttta atttagcccc
    17161 ttcgccacgc accgcagtga aaagctcgtt acggatagga tcgtaaacta cccctactgt
    17221 tgtacgtccg ttttcacgca cggcaatcga cacagcaaaa tgaggtaagc gttttacgaa
    17281 attggttgta ccatctaatg gatcgatcac ccattgtaca ttttcattgc taccgtttaa
    17341 cacgccggac tcttcggtca cgatcgagtg ttcagggtaa gatttacgga tcacatcaat
    17401 aattgccgct tccgctgctt tatcgatttc agtcacataa tcattcgtat ttttttgtaa
    17461 aacttgtgta tcttgaggcg attgttcata gcctttggca ataatattgc ctgcttttcg
    17521 tgccgcacga atagcaatgt ttaacattgg gttcatattt ccaccagatt ttaaagaaca
    17581 taataaagca cgaattataa agaatgtagc gaaataaaga aacaacaagc ggtctaatct
    17641 gtgaaaaatt ttgcaaaaaa atggcttttt ctaaccgctt ggagtttgga ttcgttataa
    17701 tacctcccat tcaagccacc catttaggta ctaaaaatgc aatttaaaga aaataaccaa
    17761 cctcgtttta aacacagaga agaacgccgt tcagatgagt gttccccccg tttttcagat
    17821 aaaggcaaaa tgcgaggaaa tgaaggtaaa agtgacagac cgcataagct acattttaag
    17881 cgtgacgagg cttattcacg ctctgagcag atttatccag cagaaggcaa aaaagccagt
    17941 ggtgaaggta gtgtgcaaat ttgggtaaaa ggtgggaata gctcagttaa agagaaaaaa
    18001 aacggcccgc tttcaccgag agcgcctgag aaaattaaga aaaatcgctt ggaagagatg
    18061 aaagtctatg gcgaaaatgc ctgtatcagt ttgttccaac aacgtcctga atctattgta
    18121 cgtttatggg caacagtgga gggggcaaaa aaattaggcg atttaatgag ctatttggct
    18181 cagcacaaaa aagcctatca cgttattgac cgtgaagaga tggagcgagt caccggtact
    18241 gaacatcacg gcgatatgtg cttattggtg aaaaaaacgg cttcatttgt gctagagggc
    18301 tatttacaag tgccgaaaaa acaagattgc ttggtactgt tagatggtgt aaacaatgct
    18361 cagaatgtgg ggggaatcat cagaacgtgt gctttttatg gtgtgaaagg cattattact
    18421 gaaaatgtgg atagcttaaa ctccagtgct gcagctcgtg tcgcagaggg tggtttggaa
    18481 tttgtgcgag cgttagaaac taaaaacaag catattgctt tggtacaact ccgccaagcc
    18541 ggttatcaaa ttgtccacct cacacgccat aagcaagccc cttctttaac caaaattaag
    18601 ctggcggaaa aggtggtttt tgtattaagt gagattcctg caagtgatgt ggcttacgca
    18661 gaagacacaa caatacagct ttcctttaat aatccgttaa atagtggttt aaatgtggcg
    18721 gtaaacgcag gtattctact taatcaatgg tatcaaaccc acattcttta aggaattgaa
    18781 atgaatcagc aaaaaccgtt tgaagtgatt gcgattgttg gcacacctcg ccacgacagt
    18841 gcatttgaaa cacatcttgc cgtttataat tggttaaaag atcgtgatta tcaaatttta
    18901 gtggaaacag aggttgccac tcagttacag cttaaggaaa gctacagttt agatcagatt
    18961 gggcagcgcg cagagttggt gattgtgata ggtggcgatg gtaatatgct tggcatcgcc
    19021 cgagctttgg ctaaataccg agtgccactg ataggcatta accgtggcaa tctgggtttt
    19081 ttaaccgata tcgcacctca aacggctttt gaacagcttt atagttgctt agtcaaaaat
    19141 gagtatgtga ttgaagagcg attcctgtta gaggctttca ttgagcgcaa cggtaaaatt
    19201 attgccgcaa ataatgcctt gaatgaaatt gtggttcacc caacccaagt ggctcgaatt
    19261 attgaatttg aagtttatat tgacggaaaa ttcgcttttt cacaacgtgc agatggcttg
    19321 attgtggcaa cgcctacagg ctcaaccgcc tattcacttt ctgctggtgg cccgatttta
    19381 accccgaata tgaatgcaat ggcattagtg ccgatgcacc ctcacactct ttcttctcgt
    19441 cctttggtgg ttgatggcga tagtcaaatt tcgcttcgtt ttgccaaata taatacccct
    19501 gatttagaag tgatttgtga cgggcaggtg aatatgcact ttacgcctga agatagagtc
    19561 ttggtgcgta aaagcccgga taaattacag ctgctccatt taaaagatta tagctacttt
    19621 actgtattag gttctaaatt aggctgggca agtaagttgt tttaaacaca agcggtgttt
    19681 tttctgatta aatttg
//
LOCUS       DANLXK010000039        19364 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.039, whole genome shotgun sequence.
ACCESSION   DANLXK010000039 DANLXK010000000
VERSION     DANLXK010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19364
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(53..1093)
                     /locus_tag="PXD88_001132"
     CDS             complement(53..1093)
                     /locus_tag="PXD88_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6280719.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
     gene            complement(1182..1772)
                     /locus_tag="PXD88_001133"
     CDS             complement(1182..1772)
                     /locus_tag="PXD88_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL6280720.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            complement(1773..3146)
                     /gene="modF"
                     /locus_tag="PXD88_001134"
     CDS             complement(1773..3146)
                     /gene="modF"
                     /locus_tag="PXD88_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL6280721.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            complement(3264..4217)
                     /gene="fmt"
                     /locus_tag="PXD88_001135"
     CDS             complement(3264..4217)
                     /gene="fmt"
                     /locus_tag="PXD88_001135"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL6280722.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            4332..4943
                     /locus_tag="PXD88_001136"
     CDS             4332..4943
                     /locus_tag="PXD88_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL6280723.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            4947..6431
                     /locus_tag="PXD88_001137"
     CDS             4947..6431
                     /locus_tag="PXD88_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL6280724.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            6432..6959
                     /gene="hemG"
                     /locus_tag="PXD88_001138"
     CDS             6432..6959
                     /gene="hemG"
                     /locus_tag="PXD88_001138"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL6280725.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            7091..7486
                     /gene="mscL"
                     /locus_tag="PXD88_001139"
     CDS             7091..7486
                     /gene="mscL"
                     /locus_tag="PXD88_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL6280726.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(7599..7862)
                     /gene="rpsT"
                     /locus_tag="PXD88_001140"
     CDS             complement(7599..7862)
                     /gene="rpsT"
                     /locus_tag="PXD88_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL6280727.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
     gene            8126..9700
                     /gene="murJ"
                     /locus_tag="PXD88_001141"
     CDS             8126..9700
                     /gene="murJ"
                     /locus_tag="PXD88_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL6280728.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
     gene            9702..10169
                     /locus_tag="PXD88_001142"
     CDS             9702..10169
                     /locus_tag="PXD88_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL6280729.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(10234..12243)
                     /locus_tag="PXD88_001143"
     CDS             complement(10234..12243)
                     /locus_tag="PXD88_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL6280730.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            12435..12970
                     /locus_tag="PXD88_001144"
                     /pseudo
     CDS             12435..12970
                     /locus_tag="PXD88_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            12998..13609
                     /locus_tag="PXD88_001145"
     CDS             12998..13609
                     /locus_tag="PXD88_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6280731.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(13620..14510)
                     /gene="rarD"
                     /locus_tag="PXD88_001146"
     CDS             complement(13620..14510)
                     /gene="rarD"
                     /locus_tag="PXD88_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6280732.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(14592..15575)
                     /gene="epmA"
                     /locus_tag="PXD88_001147"
     CDS             complement(14592..15575)
                     /gene="epmA"
                     /locus_tag="PXD88_001147"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL6280733.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            15908..17710
                     /gene="frdA"
                     /locus_tag="PXD88_001148"
     CDS             15908..17710
                     /gene="frdA"
                     /locus_tag="PXD88_001148"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL6280734.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            17726..18457
                     /locus_tag="PXD88_001149"
     CDS             17726..18457
                     /locus_tag="PXD88_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL6280735.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            18467..18859
                     /gene="frdC"
                     /locus_tag="PXD88_001150"
     CDS             18467..18859
                     /gene="frdC"
                     /locus_tag="PXD88_001150"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL6280736.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            18873..19220
                     /gene="frdD"
                     /locus_tag="PXD88_001151"
     CDS             18873..19220
                     /gene="frdD"
                     /locus_tag="PXD88_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL6280737.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
BASE COUNT         5483 a         3810 c         4333 g         5738 t
ORIGIN      
        1 ctaagtttcc acgcttaata gttacatcgt ttaagttgag catagaaaat ccttatcgtt
       61 tcgccaatac aatccagaaa aagaactgca caccgactaa tgccgtaata ataccgaccg
      121 gaaataatgc gcccggcaca aggctttttg atagcacgga tgacatcgat aaaaatgccg
      181 cacccactaa cattgaaccg ggcaggaaaa agcgttggtc ttcgcctagc aacattcggg
      241 caatatgcgg ggcaactaag ccaataaagc cgataatgcc tacaaagcta atgcaggtgg
      301 ccgtcattac agacacaatc agcaatgttt tcattcgtaa ccaagttaag ttaatgccta
      361 agctcaatgc tcgagcttcg cccaaacgca aggcagttaa tttccacgca tctttgaata
      421 ataataaaat acagactgta gttacgccaa aggcaattga gatagtctgc caagtagctt
      481 tagttaaatt accgaatagc caaaacagaa tttgttggga tacctcaggt gcagaaataa
      541 attgcaccaa tgacagtaaa gactgaaata aaaacaataa ggcaattcct accagcacta
      601 atattgccga gctaaaacgt cctaaagagg aaaaggcaaa taaaatggcg gaagaaaata
      661 gtgtcatcac aaaagccccg acaggtacag aaatttcggt gggtaaacca aatccaccaa
      721 aggcaatcac aatcgaagca ccaaagccgg ctgcagctgc taaacccaat gtataagggc
      781 ttgccattgg attattaagc aaagtttgaa tttcagctcc gccaacacca agtgctgctc
      841 caaccaccaa tgccattatt gccattggta agcgtagctc atagacaatc actttggtgg
      901 tttcttcaat ttcgcctaat tggaataagg ctttccaaac ttcattaaac ggaagcaggg
      961 aagggcctgt cataatatcg aaaatgaggc tgagtaaaca aatgagtaag aaaaagagta
     1021 ataaaaaact gcgtttcttt tcaatagttc ggtgcttttt agctatttgt tggggagaga
     1081 gcgttgtttg cataaaaatg taatgtttga gaattattat cagacaggat aagagaaaag
     1141 atcgataaat tcaagaatat ccaagatacc gactaaagta ttcaactaag ttctcgagta
     1201 gccctgtctt ttacagtaaa aaactcctga atagcggctt cttctaaaag agtataattc
     1261 tgccaaattt cggttacagc atttcttaaa atctcacctt tcttaactct tgatgacatt
     1321 cccaagaata cctgttctaa gaaatctaaa tcggcataat gagttaatgc ttttcgtgac
     1381 tgtaaccagt taaacatcgg cacaaattgt tcaggaaaaa tcgtgcgttg ttgttcgatt
     1441 tgctgaaaga tctgtgcttg tacctcattt aaatctttag caaataaccg ttggaaatgt
     1501 ttagcgagaa aatggtcgat cataatatcc gacacaatgc ctttataacg cccgaatgtg
     1561 ccttggagta attgggttgt gaggctgtcc ggtcggtccg aaatcttatc aatcgagcgg
     1621 tgtaacacca caccgctttt taagttatcc gctaaattga gatgcggaat taaaccttta
     1681 tagaaatcac cggcaaagtt gccatatagg gtctgttgct tggtttgggt gtcaatttca
     1741 agtgaaatca gcgaatgggt aagaaaattc atttatgctc caagtgcagt ttggtgatac
     1801 tcaaacccaa actcgttggt ttcgcctttc ggtacaaact caaataaatg cgtaatgcaa
     1861 tttggagcat cgctgtcttg gtgcgaaaca aaaagtagtt gcgtttggct gttagtcact
     1921 aattgttcaa tgaactgttt gactaatttg cggttaatgc cgtctaaacc ttgtaacggt
     1981 tcgtctagaa tcagaattga tgggtgtttc accattgctc gggtaatcaa aagtaagcgt
     2041 tgttgccccc acgagagaga gcgaaacggc tttttggcaa cattgcttaa attgaggcgt
     2101 tccaaccatt ccattgcttt taattgcaag gcattcggca cttgttgata cacgccgatg
     2161 ctgtcaaaaa agccagaaag aatgacctcc attgcggagc aatttacccg ataatccata
     2221 tgcaactggc tgctgacata gccgatattt ttcttaatat cccaaatggt ttcgccactt
     2281 ccccgttgtt tgccaaatag tcggacttta ttggcataag attgtgggtg atcgccggtg
     2341 ataatcgaaa gcaaggtcga tttcccagct ccattcgggc ctttaatcca ccagtgttgt
     2401 ttaggctgaa ccgtccaact taggttatct aaaatcttct tctccccata ttgaatattc
     2461 acattttcca actcaaacgg attgatgttt tccggcaggc tgagtagcgg agctgcacta
     2521 tcaggcagtg gcacattgac attctcttct gcaaatttta gctgagaata gaccgcttgt
     2581 tgttcaattt ctgctcgctc tccttgcaga attaatgata aattatctaa taactcaata
     2641 tgattggcag catcaggaat atcgttaaaa cgatttacaa tcagcactaa cgccattttg
     2701 ctttgtagtt cggcaatcag ttgttgccaa tattgcaccg actgctgatc cagcccttca
     2761 aacggttcgt ctaaaatgaa taaatccggc tcgctcacta acatttggca aaatagcact
     2821 ttgcggcttt caccggtgga aaggtgcata aacgggcgtt caagcagatg ttgaatatgc
     2881 aatttgtggg catattcctc acataacgcc tcttttggac tgccatttaa aattacttgt
     2941 cgtgcggtta agccgaaatc atcgggcgag acactatcgt tgttccgatc tttgaaaatc
     3001 tgctccaaca ttttttgttg ttgctcgaaa gagaggagct gaatatgttg gaacgaatta
     3061 ccatagtcgc cggaatagag cgagatttta ccctgtaaag cgagtgaaaa agttgttttg
     3121 cctgaaccgt ttccgtctac gaccacctaa aagtcattgg gttggatctg taaggcgtca
     3181 atcgtgagtt tatgttgttt aaccagtgaa aatcgggcat tggttattgt aagtgaaggc
     3241 tgtgtttgca tatatttccc gttttaactt agttgtgtcc cgctgacgaa ccaatccgct
     3301 cgaccgttta agaaatcttg caccgacatt ggttttttac ccgccggttg aagttgggta
     3361 atattcagca cgccctgttg ggtggcaatt tgaatcccgg ttttatccac attaattacc
     3421 gtgccggctg ctttttcttg gtgaggtaac accgtggctt ggtgaatttt gatactttgc
     3481 tcaacgccat caacggttaa ggttaaaaaa ctaaacggcc aagggttaaa agctcggata
     3541 ttgcgttcca gttgaactgc tgggagttgc caatccaatt tagcttcttc tttggaaagt
     3601 ttctcggcgt aattggacag tgcttcatct tgtttttccg ctttgaatgt gtggttggct
     3661 aaaccgttta acacctcaag caatgccaga ggggcaagtt ctgccagttt ggcatacaag
     3721 gaggcggagg tttcattcgg ctcaatcggg gttgtgactt tatgtaacat atcaccggtg
     3781 tctaagccaa cgtccattag cataatggtt acgccggttt ctgtatcacc tgcccaaatc
     3841 gaacgctgaa tcggagctgc tccacgccag cgaggtagta gcgaaccgtg tacgtttagg
     3901 caaccatatt taggagcatt caatactgct tcaggtagaa ttaagccgta agctaccacc
     3961 accatcacat cggcatttag ggctttcagt tcagcttgag cctcttcctt acgcagggat
     4021 ttgggttggt aaacaggaat gttgtgagct tcggccagct gttttaccgg gctggcttgc
     4081 agttttttgc ctcgcccggc aggtttatcc ggctgagtat aaaccgcaat cacgttatgc
     4141 tcggaatcta ataaggcttg taaatgttga gcggcaaaat caggcgtgcc ggcaaaaata
     4201 atattgagtt ttgacatatt ttttattcgt tcaagttatc aatgaaagac ttattaaacc
     4261 attaaacagc acaaataaaa agtggcttga atatggtatc attgccacat tcaagataag
     4321 agaatcaaac aatggaattt tttatcccca aagcggatac aatttttgaa gaagagatta
     4381 aaaaaagccg atttatcacc taccttcgcc atactgaggg tatggagcag gccaaggcat
     4441 tttggcagga gctgaaaatt cagcatccgc acgcacgcca ttggtgttgg gcaacggtgg
     4501 caggcttgcc gaatgattcg caacaatacg gcttttcgga tgatggagaa ccgtctggta
     4561 cagcaggtaa gccaatgctc aattatttgc ttgggtcagg cttgggggaa attacagcgg
     4621 tggtggttcg ctactacggt ggtatccagc ttggcaccgg cggcttggtg aaagcctatg
     4681 gcaatggggt gcaacaggcg ttattgcagt tggagcggat tcgcaaagtt ttgcgaaaaa
     4741 actaccgctt gcaatgtgaa tatgagcagt ttaataccat ttctcatctc attagcgaga
     4801 aagatattgt gattgtcgag caacttttta gcgataaagt ggatttgttg ctggcattta
     4861 acccgagcga ggttgaggcc tttgcagatg aattaaccca acgcttttcg ggcaagctcg
     4921 cattaataaa agaagaaatc tagtctatgc aatttttttc cattattcgt attgttggca
     4981 ttttggtgat gtgtttttca ttcacaatgc ttgtgccggc aacggtcgcc ctaatttatg
     5041 gcgatggcgg tgggcgggcg tttttagaag ccttcgctct gaattttatg gtcggtacgc
     5101 tgctttggtg gctgtgccgt gacaacaaaa acgagctacg ttcccgtgag ggctttttga
     5161 ttgtagtact gttttgggtg gtgctgggtt tgctcggggc tgtgcctttt attattttgg
     5221 aaaaccccga tttaaacgtg gcggaatcca tttttgaatc cttttccggc ttaactacaa
     5281 cgggtgcaac cgtcatcacc ggcttagata gcttgcccaa agcgatttta ttctaccgcc
     5341 aatttttgca atggctaggg ggaatgggga tcattgtgtt agcggttgcg attattccgc
     5401 tgttaggcat tggtggaatg caactttatc gtgcggaaat gcccggaccg ctcaaagagc
     5461 agaaaatgcg acctcgcatt gcggaaacgg caaaagcgtt gtggctgatt tatctcagcc
     5521 tgacgattct gtgtgcggtc gcattttggc tcgccggaat gacggtgttt gatgccattt
     5581 cgcatagctt ttccacggtt tcgattggcg gattttctac ccacgatgcc agcatcggct
     5641 attttaataa tgcggcaatt agctatatta ccgtgttttt cctgctactt tctgcctgca
     5701 actttgcatt gcattttgcg gtgattgatc gcatacgaga tgcacaatca cgcaaaaaag
     5761 ggggtatttt aagccgcttg tattggggcg attacgagtt tcgttttttc ttgatggtgc
     5821 agttagggct tttcttggtt tgtaccttgg tgttagtggg ttacggttat ttcgataata
     5881 cctctgttac gattgagcaa gcgttgtttc aatcggtgtc catttccacc acggccggct
     5941 ttactaccaa tgattttagc caatggagtt cgtttttacc cacgctgttg gtgctgtctt
     6001 catttatcgg tggttgtgcc ggctcaaccg gtggcggctt gaaagtgatt cgggtgttgc
     6061 tgctttattt acaaagtaaa cgtgaaatcc accgctacat tcaccccaat gtgattcaac
     6121 cgattaaatt aggcaaccac gttttatcgg aacgggtggt tgatggtatt tgggcgtttt
     6181 tctcggcgta ctttttcgtg ttcgtgatct gctggcttgc taccatcgct tgtggaatgg
     6241 aaacctttga tgctctaaat gcggtaattg cctcactaaa taatctaggt cctgcattag
     6301 ggagcgtgag cagcaatttc acccaagtgc cggacagtgc caagttagtg ctgacttttg
     6361 caatggtatg cggacgtctg gaagtgttta ccttgctggt gattttaagc cctgtttttt
     6421 ggaaagatta aatgaaaacc ttaattctct attttacgac cgatggtcaa accaaaaaaa
     6481 ttgccgaacg attggcggac gtgattactc acgaagtcga gctgatttcg ctaaaagatc
     6541 aagcggtcga ttttgccgaa aaaattgcaa atgccgacca aattgtcatc ggtgcttcaa
     6601 ttcgctatgg gcattttaac ccgttggttt atcagtttgt ggaacagcat tatccggcat
     6661 taaacgccaa gaaaactgcc ttttacggtg tgaatttgac cgctcgcaaa gataatcgaa
     6721 acacgcctga aaccaatact tatgtgcgta aatttttagc taaagtgaaa tggaaaccaa
     6781 cccacattga ggtaattgct ggggcattac tttacctacg ctataagcca ttcgaccgat
     6841 tgatgattcg ctttattatg aaaattacca aaggcgaaac cgatacctcc aaagaatatg
     6901 agtacaccga ttggcagcag gtggagaatt ttggcaaatt attagccaat cagttataat
     6961 caaactgatc taaatcaaaa aaatgtaaat ttatttaaat gttgtagaaa ttttaaagat
     7021 tttgattata atcgccagcc cacgttcttg cgaagaccgt gtttaatcat tgaatgaaag
     7081 gaaagccccc ttgagtattt taaaagagtt ccgtgaattt gcggtaaaag gtaatgttgt
     7141 tgatatggct gtcggtgtga ttatcggcgg tgcattcggt aaaattgttt cttcattagt
     7201 tagcgatgtt gtaatgccac ctatcggttg gttaatcggt ggcgtggatt tcaaagattt
     7261 agccattgaa atcgccccgg caaaagaagg tgcggaagca gtgatgttaa aatacggtgc
     7321 atttatccaa aacgtatttg atttcttaat tatcgcactt gcggtattcg gtatggtgaa
     7381 agtgattaac tcactgaaaa aagctccagt tgtagaagaa gctcctgcag agccaacagc
     7441 ggaagagaaa ttattaactg aaatccgtga tttattgaaa aaataattaa ctgattttga
     7501 aacaagggct attttagaat atctagaata gccctttgtg ttatggttaa aaagaaaaaa
     7561 accaacataa agtcggtttt tttcatatct gttcgatatt acgctaattt tttgatttgc
     7621 gctgctaatt tagatttgtg gttagccgct ttgttagcgt ggattaagtt tttagatgcc
     7681 atacggtcta caactttttg catttcaacg aaagccgttt gagctgctgc tttatcgcct
     7741 gctgctactg ctgcatatac ttttttgatg aatgtacgca tcattgagcg ttggcttgcg
     7801 ttgtgttggc ggcgtttttc agattgaacc gcacgttttt ttgctgactt gatattagcc
     7861 aaggtcaaac tcctaaaata tctgtgtaaa aattagatat aaacaaaatc gttgtttata
     7921 ttgcctatcg atagttttta attcattttc aacgagacac gtgcttgaaa ataacaccgt
     7981 ttttctgata gaaaacgata gggcgagatt ttaacagttt ttttctgatt ttcctataac
     8041 aaactgctaa aattatgatc gatttttagg atcagactac aagcggtctg atttttcaat
     8101 aattttacta atattactct ttattatgag caaaaaactt ttaagatcag gaatgatcgt
     8161 aagctttatg accttaattt ctcgcatact cggtttgatt cgagacattg tggtggcaac
     8221 cattttaggc acaggcgtga gtgccgatat tttcctgttt gccaaccgta ttcccaattt
     8281 tcttcgccgt ttgtttgccg aaggggcatt ttctaaagcc tttgtgccgg tgttggcgga
     8341 atataatgcg gataacgatc caaacaaaac gagagaattt attgccaaag tatcgggtac
     8401 attaggaggt ttggtaactg ttgttaccct tgtggcaatg attgcctcgc ctgtggttgc
     8461 cgctcttttt ggtacaggtt ggtttttaga ttggctttac gacgggccaa atgccgaaaa
     8521 attcacccaa gcctcttttt tgctcaaaat cactttccct tatttgtggt ttattacctt
     8581 tgtggcgtta tccggtgcgg tgttaaatac catcggtaag tttggggtga tggcattttc
     8641 cccggtgttg ctgaatgtgg cgattatcgc ggtagcgtta tggggcagag attatttcga
     8701 ttccccggat attgccttag cgtggggggt atttttaggc ggcttattgc aatttttatt
     8761 ccaaattcca tttatgaaaa aagagggctt actggttaag ccaaaatggg cgtggaaaga
     8821 cgaaggtgtc actaaagtcc gtaaattaat gattccggct ttatttggcg tttccgttac
     8881 ccagctaaat ttactgctaa accaagtgat tgcctcgttt ttgattaccg gctcgattag
     8941 ttggatgtat tatgccgacc gcttaattga atttccgctc ggtttatttg gaattgcgat
     9001 ttccaccgtc gtgctgccaa gcctttcccg tattgcgaaa aacaaagaac tcactgaaat
     9061 ccaacgtgga gaacactttc aaaacacaat ggattggggg gtgagaatgg tgctgttgct
     9121 cggcattccg gcaatgatcg gtatggcagt gctggctcag ccgattatta tgacaatgtt
     9181 tatgcggggt aaatttggtt ttgaagatgt gctggcaacc tcttatccac tttgggtaat
     9241 gtgcttgggg ttaaacagct atatgttgat tagcgtgctg gcaaacggtt tttatgccaa
     9301 ccaaaacacc aaaacaccgg taaaagttgg gattattgcc gccttaagta atatttgctt
     9361 tggcttggcg tttgctccgt ttttgggata cattggttta gcgttagctt ctgcgtgttc
     9421 ggcattagtg aatgtgagct tgctgtatgt gaatctctca aaaaatggtt actataaagt
     9481 aagccataaa accgtgcttt ttgtgttgaa actattcatc gccgcttgtg taatgggggc
     9541 gttggttgcc tatttcacgc ctgagattga actttgggca ttaatgacaa tgtggcagaa
     9601 agtgtattgg ctgatttggc tgatgatctt agccggcggt agttattttg cctctatttt
     9661 ggtattaggc attcgtaaaa aagatttccg ctcggcataa aatgaaatca ttaaaactga
     9721 aaatcccgcc gccggcttgg ttcttgcttt gtgccgcttt aatgtggctg gtagctcaat
     9781 atgtgccggt gagcttgccg aattatcagc atacagccat attttttagc ggtttagctg
     9841 tggcgataat tggcggagcg gttgccgtct cggcactttg ggtcatacac caagcgaaaa
     9901 cgacatacag tccttttcga ccacaacata ccgctaaatt ggtcacttgg ggcatttacc
     9961 gcaaaagccg aaacccaatg tatctttcgt tactattagg tttgattgcg tgggcattat
    10021 ggttgggggc aatgttggcg tggctggttt taccgctgtt tgtatggttg ataacctatt
    10081 tccaaatcaa gccggaagag caaattttag cccaaaaatt cggcacacat tatgccaaat
    10141 attgcaacca agtaaggcgt tggctttaaa tgcaagcggt gagattttgt tggaaatttg
    10201 caaatttttc cgaaaatctc accgcttgtg gggttagtga ttgaaatcag ccgtcattaa
    10261 gtcgtgcgag ttgtccatcg ctaaattgat aaagcgttca tactgttgca gcacgtcggc
    10321 aatcaactct tctttggtca tatattgcac atcataacct ttccgcccgt ctaagaaata
    10381 agtaatcggc tcgtaaatgg tattttgctc aatgttcggt aggttgtcgt cacctaccac
    10441 caaatccgat aattcccgtg gcacactttc aatgccgtaa atgaaattgc gtaaattttc
    10501 tttcaccact tcaaactcta atttcgggtt ttgttcgttg gtgaaattca ttttagcgat
    10561 taagccatag ctttcaaatt cctcgataag ttctaaaaat gctggtctgg caactttaat
    10621 aaagaagtga cggacatctt gcttattgct tgggttgatg attttctcca agcgttgttt
    10681 ccaatcttta cccgcccaat gttggctacc ttgcgagaat tttttgttga agtattggtt
    10741 atctaccatt aatcctttcc ataagccgat acagagaatc agcataatga aggtaaatgg
    10801 taaggcgata atcagtgtca ttgtttgcag agaagccaag ccacccgaat agagtagtga
    10861 taacgctaag atggctaata atgctcccca aagcacgctt tgccatttcg gtgcattttc
    10921 ttcgccttgt gaagcaatgc tgttgagaac aaaaatcccc gagtcggcag aggtgataaa
    10981 gaaaatactg ataacaatga cggcaacgaa agaggcaata gagccaaacg gtaattgctc
    11041 aaaaaaggta aataacagtt gttcggtatt gccgctgact tcagctaaag caccggcagt
    11101 ttgttgatcg aaccaaatgg cagagctgcc gaagctggtc atccataaaa tgttaaacag
    11161 cgatggaaca aatagcaccc ctaaaataaa ttcacgaatg gttctgcctt tagagatctt
    11221 ggcaataaac aaaccaacaa atggcgccca agatgcccac catgcccaat aaaggaccgt
    11281 ccagccgctt agccagcctt gatgttccgg ttcataagcg aaggtacgga aactcatctc
    11341 aagcagcgag ctaaaataat agcctaaatt ttcggtgaag cttgagaaaa gtaatagagt
    11401 tgggccggtg attatcacaa aaataagtag caatccggct aatgtgagat tgatttcact
    11461 taagatttta acccctttgc ctacgcccga aacggcagat aacacggcaa gagccattgc
    11521 tactgttacg ataatcgcaa gaacagtaaa attgctctgt tcaattaaac ctagattgtt
    11581 aaagccagca ctgacctgca tcaccccaaa gccaagtgta gtcgttaaac cgaaaatcgt
    11641 gctacaaagg gcaataatat caattaaatg cccccagaag cctgaaatac gatgttttag
    11701 taagggataa aatccggaac gaatagtgag tgctaactta tatctgaagc caaaataagc
    11761 aagagctaag gcaatcacac cataaattgc ccaagcgtga ataccccaat gatagaacgt
    11821 tgtcatcatc gcttctttca tacgctccgg ctcagttaaa ttttgttgga cgggtttaag
    11881 gtaatgcaaa ataggttctg ctaccccaaa atacattaac ccgatcccca ttccggcggc
    11941 gaataacatc gcaatccaag agccaaaacc aaattcaggc tcatcggtat ctgcccctaa
    12001 tttaatatca cccaatcggc tgaaagagag aaaaattaga aacaggaaaa agatagagcc
    12061 tgcaaaaata tagaaccagc taaaatgttg gaagagacta tttttgatgg tatcaagtga
    12121 ggtttgtgct tgctgtggaa agatgataca gaaaacggca acaaagctga caaagagtaa
    12181 actcggtagg aaaatcggta ccctaaaggt acttcctgtg tttaattttt tgattaaatc
    12241 caatgctatt tcctctattt ttgaatggtt agaggcttga atatagcaaa aagatataaa
    12301 aataacaaat ttaagacgta ttggtaataa tattgcaacc taatgggttt ggtaaaaaaa
    12361 tcgggaaatt tgaccgcttg cacattcatt atttgcgagt agaatatttt tcatttataa
    12421 aaaacgaata aagaatgcac acacaacata acgctcaaaa aatggttttg cccattttac
    12481 tgctgatttc cctttctcat ttgttgaatg atttagttca agcagtaatg gtttcgatct
    12541 atccaatgct aaaagaaaat taccaactga gttttgctca aattggtatg atttcactca
    12601 tttatcaaat taccgcatct attattcagc cgggtattgg gctttatacc gatacccaaa
    12661 accgaattta ttgcccgtca gtatgctgat tacgcttctt tccgtgattt tacttgcctt
    12721 ttcgccgaat tttggcgtgt tactgatagc cgctgcgtta atggggatag gctctgccat
    12781 ttttcaccct gaagcctctc gggtggctcg aatggcatcg ggcggtaaat ttggtacagc
    12841 tcagtcgctt ttccaagtag gtggaaacag tggatcggcg ttaggtccgc tcttagttgc
    12901 attatttatt gtgccgttag ggcaaagtgc ggtgatttgg gttgttgcat ttgtattatt
    12961 ggcattatga tgggttttat ataaagtaag ccgttgggtg aaatatgaag ccaaaccgct
    13021 cattatttca ccaaaccata ttcaacaacg cttacacggt aaattattag ccagagcatt
    13081 attaattatc gctttattga tgttagcgaa atttatttat attgcgagcc tcagtaacta
    13141 tttcaccttt tatttaatgg aaaaattcca actcaatata gcaatggcac agctctctct
    13201 atttaccttt ttaggtgcag ttgctttagg cgcttttgtc ggcgggccga ttggcgataa
    13261 gattggacga aatgcggtga tttggttctc tttcttaggt atggcacctt ttgctttgtt
    13321 gttgcctcac gcagatctct tttggacgat tgtgtgtgcg atttttgccg gttttattat
    13381 gtcatcagcg ttctccgcta tggtggttta tgctcaagaa gccgtaccag gcagagtagg
    13441 gctgatttcc ggcacaatgt tcggtttaat gtttggtatt ggcggcttaa gtgccgccgt
    13501 attgggtttt tttgcggatg aatatggctt ggagagtatt tttaaagcct gtgcctattt
    13561 gccactactt ggttttgctg cattagggct accaaaacga aatatttaac gttttatttt
    13621 tagcgtttga caccagcttt tttcataccc aataagaaaa cccccacccc aatccaaacc
    13681 agaatgtagc ctacagcacg ttcggcggaa agtgtctcat taaaaatcag cacaccgcat
    13741 aaaaattgca gggtaggtga aatatattgc agcataccga gtagcgacat tgaaatgcgt
    13801 cttgcaccca ttgcaaacca tagcaatggt aaggtagtgg caatgccgga gcagagtagc
    13861 actgccattt gtaaaggatt gagttcactg aataccaaaa tgttttggtg gtaacaaaag
    13921 cagagatagg tgatggcaaa aggcgacatc agcaaagttt ctaacgccaa accagacaaa
    13981 ggttccattg gggcaagttt acgaatcagc ccgtaaatac agaaactggc ggctagaatc
    14041 aatgcgaccc acggaatttg tccggcagga atagcaagcc ataaaatgcc gctaattgca
    14101 aacagcagag ccaataattg ggctttattc agctgctctt ttagaataag cctaccgaca
    14161 aacacgttga aaatggggtt gataaaataa cctagactgg catctaaaat atgctcattg
    14221 acgattgccc ataagtaaac cagccagttc acgccaatca taaaagaaga aagcacgaac
    14281 agcccgagta cctttggctg tttaaaggca ttaataaccg ctcgcccttg ttggaaaatc
    14341 agcagcagaa acacagcaaa tagggcagac caaagcaccc gttgagccaa aatttgctcg
    14401 gcaggcattc ccgattggtt gatcggatac caataaatcg gaaaggttcc ccaagttaag
    14461 tagcacagta gggcatagtg ccaaccctgt aatttgcctg aaatattcat tttgctttcc
    14521 taaacgagtg tacaagcggt catatttgtc gatttttttg caaattgcaa atcacaaaac
    14581 ggcataaaaa attaggcttt ttcaatgccg aaagaaataa cctcttcaat tttttccgca
    14641 tccattgcca gcattaacag cctatcaacc ccaagggcga cacctgagca gtttggaaaa
    14701 cccgctttga gtgcggcaag aaaacgcaca tctagttgct gtggctccag ccccattttt
    14761 tcacgttgca gattatcttg ctcgaagcga tgaatttgct catcagcatc gtctaattcg
    14821 tggaagccgt tacagagttc caagcctttg tagtaaaact caaaacgttc ggcaacacgg
    14881 tgatcttccg agctaatttg agctaatgcc gcttgggtgg aagggaaatg ataaacggca
    14941 gttggtcttt cttgcccgat attggcttcg acaacctcgc tgaataaaaa ttgtaacaag
    15001 gtgtcacgct gttcatcatc atcacattgc aagccgtgtt ttcgggcttt ttccacaagt
    15061 tgtgctttgg tggcagaaag cggatctaat ccgacatagg tttggaacac aaattgatag
    15121 ctgaatgatt ctgccggttc gcagtccaaa atttgttgca gtaaatcatc cacttcattg
    15181 attaagcgat acatatcaaa atgcgggcga taccactcca gcatcgtaaa ttcagggttg
    15241 tgtcgcttac cggcttcctc gttgcgaaat actttacaca gttggaaaat cggtccactc
    15301 ccagcagcaa gtagtcgctt catatgatat tccgggctgg tcatcagatg gagtgttttc
    15361 gcctcagggg aaaaaggcga ttgaaactgc gtattgaaag tcgaaagatg aacgtctgtc
    15421 accgaaaatt cgcttaaaat cggggtttct acctctaaaa gccctcgatc ggtaaagaac
    15481 ttgcggattt ccgtaatgat ttttgaacgt tggatcaggt gaggaataga ggctgttggt
    15541 tgccaatcaa tattatcgag ttgtaaattg ttcataaaaa atgaccgctt gaaaatgtga
    15601 ggctatttta gcctaaaaaa gtgagttgcc ctagttaccg atcaagaaaa ataaagagag
    15661 ggttttaact tttttgcaac aaattaaatt ttctcatttt aaacattaga aattttcttt
    15721 ctatcactgt ccaattaaga gccattctca atacctttat gaagctttat tacctttttt
    15781 gaggtagatc acaaaattac attttttatg ttacaaattt gtaaaaatag gttatctcat
    15841 tgctcaaata gtggcacaat atgattactt tttaatgaat taagttattt aactttcgga
    15901 gtgcattatg caaagtgtta attttgatgt cgcgattata ggtgccggtg gtggtggctt
    15961 gcgtgctgct attgcggcgg ctgaagcaaa tccaaatcta aaaattgctt taatttcaaa
    16021 agtttaccca atgcgtagcc atacggttgc agcagaaggt ggttcagcgg cggtaattaa
    16081 agataccgac tctttcgaca atcactttaa tgataccgtc ggtggtggtg actggttatg
    16141 tgagcaagat attgtggagt attttgtaga gcattcgccg attgaaatga cacaattaga
    16201 acgctggggt tgcccttgga gtcgtcgtga agacggtgaa gtgaatgttc gccgttttgg
    16261 aggaatgaaa attgagcgta cttggtttgc ggcggataaa accggtttcc acattttgca
    16321 tactttgttc caaacttcga ttaaatatcc gaatattgtg cgttttgatg agcattttgt
    16381 gctggatatt ctcaccgaca acggcgaagc tcgtggttgt gtggcaatga atatgatgga
    16441 aggcacactt gttcaaatca atgcaaatgc agttgtgatt gcaaccggtg gcggctgccg
    16501 tacttatcgc tttaacacta acggcggtat tgtaaccggc gacggtttat caatggcgta
    16561 tcgtcacggt gtggctttgc gtgatatgga gttcgtacaa tatcacccaa caggtttgcc
    16621 aaataccggt attttgatga cagaaggttg tcgtggtgaa ggtggtattt tagttaataa
    16681 agatggctac cgttacctgc aagattatgg tttaggaccg gaaacaccta tcggcaaacc
    16741 ggaaaacaaa tatatggaat taggccctcg tgataaggtt tcacaagcat tctggcaaga
    16801 atggcgtaaa gggaacacct taaaaaccgc aaaaggcgtg gacgtagttc acttagattt
    16861 acgccattta ggtgaaaaat atttacttga gcgtttaccg tttatttgtg aattagcgaa
    16921 agcctatgaa ggggtcgatc cggctaaagc gccgattcct gttcgcccgg tggttcacta
    16981 cacgatgggt ggtattgaag tggatatgaa tgcggaaacc tcaattaaag gcttattcgc
    17041 agtaggtgaa tgtgcttcat caggcttgca cggtgcgaac cgtttgggtt ctaactcatt
    17101 agcagagctt gtggtgttcg gcaaagttgc cggtgaaaat gcggctcgcc gtgcgttaga
    17161 agtgactgct cgcaaccagc cacaaattga tgcacaagca aaagatgtgg tggctcgctt
    17221 gcacgcatta gcgaaccaag agggtaatga atcttggtcg gatatccgta accaaatggg
    17281 tgatgcgatg gaagaaggtt gtggtattta ccgtacccaa gaaagtatgg aagcgactgt
    17341 aaacaaaatc caagagctaa aagagcgtta taaaaacatc agcgtaaaag ataaatcaag
    17401 tgtgtttaac actgatttac tctacaaaat tgaattaggc ttcattttag atgtggctca
    17461 atccattgct tgctctgcgg tagagcgtaa agaatctcgt ggggctcacc aacgtttaga
    17521 ctatgttgag cgtgatgatg tgaactactt aaaacacaca caagcgtact acaatgcaga
    17581 gggtacaccg acgattaaat acagcgatgt gaaaatcact aaatcacaac cggctaaacg
    17641 tgtgtatggt gcagaggctg aagcccaaga aaaagtcaaa aaagcagcag aagctcaagc
    17701 acaacaatag agaaggagta gtaaaatggc aaatttagat aaaatgacca tcgaagtgct
    17761 acgctacaac cctgaatcag atagcgagcc acatttagac agatatgaag tgccgtatga
    17821 cagccaaact tcacttttag atgcattggg cttcattaaa gacgaattag aaccggaact
    17881 ttcttatcgc tggtcttgcc gtatggcgat ttgtggttct tgcggaatga tggtaaacgg
    17941 taagccgaag ttagcttgta aaacattcct gcgtgattac agcggtttta tgcgaattga
    18001 gccgctggcg aacttcccga ttgagcgtga cttagtagtg gatttaagcc actttattga
    18061 tagcatcgag gcaattaaac cttatattat tgataataaa gcaccggaag gacagcgtac
    18121 taaacaaacg ccggcacaat tagagaaata tcgtcaattc tcaatgtgta tcaactgcgg
    18181 tttatgttat gcggcttgcc cacaatttgg tttgaaccct gaatttatcg gacctgctgc
    18241 gattacattg gctcaccgct ataacttgga taaccgtgat aatggtcgtg aagagcgtat
    18301 gaagctactc agcagcaaaa acggtgtttg gagctgtact ttcgtgggtt actgctcgga
    18361 agtctgtccg aaacacgtcg gccctgcttc ggctgtaaac caaggtaaac ttgaaagtgc
    18421 gaaagattat gttatctcaa tgatcaaacc gagataggag gaagaaatgt cagcaacaaa
    18481 acgtagacct tatgtaaggg gaatgaaagc cagctggtgg aaaaaactcg acttctataa
    18541 aatgtatatg gtgcgtgaag ctacctgtct tccaactgtt tggttctgca ttgtattatt
    18601 ttatggagca gttgcgttaa gtaaaggaac atttactacc gattttgtgg atttcttaca
    18661 aaatccgtta gttgttatcc taaacataat ttcattggca gcaatgttat atcatgcggc
    18721 aacacttttt gtgatgacac ctgccgtcat gtccgtgatg gttaaaggta aacacttacc
    18781 agtctcggtt ggaagaaata ttctttgggc agcaacaggc gtaattagcg taattgcatt
    18841 aatcttggtt tatatttaag aaggggaaga aaatgagtct tgatcaaaac ccaaaacgtt
    18901 caaatgaacc gccggtatgg ttgcttttta gtgctggggg aatggtaagt gcattatttt
    18961 tccctgtggt aatctttatt atcggtttat tactgccatt cgggttagta tcaccagata
    19021 atatcatttc ctttgcccat acttggatcg gcaagctcgc tattatggta ttagcgattt
    19081 tccctatgtg ggcaggaatg caccgtatcc atcatggatt acacgacctg aaagttcaca
    19141 cgccagcagg taatgtgatt ttctacggat tgtctatctt atacacaatt ctagtaatca
    19201 tcgcagtcgt gcagatttaa atgagaaaga ccatcttgta taaagcagat ggtcttttca
    19261 tttttaatat gctaacaagc ggtcgaattt ataagaaaat ttgcaaatat tagaaatttt
    19321 gccgataaaa cgatcgtttt gtattaaata tctgcaaaaa agat
//
LOCUS       DANLXK010000040        19081 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.040, whole genome shotgun sequence.
ACCESSION   DANLXK010000040 DANLXK010000000
VERSION     DANLXK010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19081
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            16..966
                     /gene="tal"
                     /locus_tag="PXD88_001152"
     CDS             16..966
                     /gene="tal"
                     /locus_tag="PXD88_001152"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL6280738.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(1028..1301)
                     /locus_tag="PXD88_001153"
                     /pseudo
     CDS             complement(1028..1301)
                     /locus_tag="PXD88_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(1332..1796)
                     /locus_tag="PXD88_001154"
     CDS             complement(1332..1796)
                     /locus_tag="PXD88_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL6280739.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(1817..2416)
                     /locus_tag="PXD88_001155"
     CDS             complement(1817..2416)
                     /locus_tag="PXD88_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6280740.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            2450..4177
                     /gene="argS"
                     /locus_tag="PXD88_001156"
     CDS             2450..4177
                     /gene="argS"
                     /locus_tag="PXD88_001156"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL6280741.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            4367..5533
                     /gene="cgtA"
                     /locus_tag="PXD88_001157"
     CDS             4367..5533
                     /gene="cgtA"
                     /locus_tag="PXD88_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL6280742.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            5618..6235
                     /locus_tag="PXD88_001158"
     CDS             5618..6235
                     /locus_tag="PXD88_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL6280743.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(6282..8240)
                     /locus_tag="PXD88_001159"
     CDS             complement(6282..8240)
                     /locus_tag="PXD88_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL6280744.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(8237..8794)
                     /gene="ccmE"
                     /locus_tag="PXD88_001160"
     CDS             complement(8237..8794)
                     /gene="ccmE"
                     /locus_tag="PXD88_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL6280745.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(8980..9177)
                     /gene="ccmD"
                     /locus_tag="PXD88_001161"
     CDS             complement(8980..9177)
                     /gene="ccmD"
                     /locus_tag="PXD88_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL6280746.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(9192..9929)
                     /locus_tag="PXD88_001162"
     CDS             complement(9192..9929)
                     /locus_tag="PXD88_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL6280747.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(10129..10791)
                     /gene="ccmB"
                     /locus_tag="PXD88_001163"
     CDS             complement(10129..10791)
                     /gene="ccmB"
                     /locus_tag="PXD88_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL6280748.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(10788..11429)
                     /gene="ccmA"
                     /locus_tag="PXD88_001164"
     CDS             complement(10788..11429)
                     /gene="ccmA"
                     /locus_tag="PXD88_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL6280749.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(11573..12283)
                     /gene="hda"
                     /locus_tag="PXD88_001165"
     CDS             complement(11573..12283)
                     /gene="hda"
                     /locus_tag="PXD88_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL6280750.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            12553..14154
                     /locus_tag="PXD88_001166"
     CDS             12553..14154
                     /locus_tag="PXD88_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6280751.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            14426..15430
                     /locus_tag="PXD88_001167"
     CDS             14426..15430
                     /locus_tag="PXD88_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6280752.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            15532..16425
                     /locus_tag="PXD88_001168"
     CDS             15532..16425
                     /locus_tag="PXD88_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6280753.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            16436..17425
                     /gene="dppD"
                     /locus_tag="PXD88_001169"
     CDS             16436..17425
                     /gene="dppD"
                     /locus_tag="PXD88_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL6280754.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            17553..18542
                     /locus_tag="PXD88_001170"
     CDS             17553..18542
                     /locus_tag="PXD88_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280755.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
     gene            complement(18776..>19081)
                     /locus_tag="PXD88_001171"
     CDS             complement(18776..>19081)
                     /locus_tag="PXD88_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248476.1"
                     /note="Bacteria have multiple sigma factors which are
                     active under specific conditions; the sigma factor binds
                     with the catalytic core of RNA polymerase to produce the
                     holoenzyme and directs bacterial core RNA polymerase to
                     specific promoter elements to initiate transcription;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HDL6280756.1"
                     /translation="DDDEENHFFDNYGHWKEEYYPSSWQEEAVYSKEFWILFEVCLSN
                     LPAKQARVFMMREYLEATSDEICRVVNITSDNLYTLIYRARLQLQQCLSRKLTERNR"
BASE COUNT         5751 a         4191 c         3971 g         5168 t
ORIGIN      
        1 aaaaggaatc agactatgag ccaacttgac accttaagca aaatgaccgt tatcgttgct
       61 gacactggtg atattgaagc aatcaaactt tataagccaa aagatgcaac aacaaacccg
      121 tctttaattt taagtgcatc ggcattaccg caatatgctc cattaattga agaagcgatt
      181 aattacgcaa aagcacaaag tagcgataaa gatcaacagt tagttgatgc tgaagataaa
      241 ttagcggtaa atattggttt agaaatctta aaacttgtac ctggacgtat ttctacagaa
      301 gttgatgctc gtttttctta tgatactgaa aaaactatcg ctaaagcacg taaattaatt
      361 ggattatata acgatgcagg catcagtaat gatcgcattt taattaaaat tgcctctact
      421 tggcaaggta taaaggcagc agaacagtta gaaaaagaag gcattaactg taacttaacg
      481 ttattattct ctcaagctca agctcgtgcg tgtgcagaag caggggttta cttaatctct
      541 ccattcgttg gtcgtatttt agactggtac aaagctcacg aaggtaaaga atatgctcca
      601 gctgaagatc caggtgtaat ttcagtaacc aatatataca attactacaa acaacacggt
      661 tatgacacta ttgtaatggg tgcaagtttc cgtaatgtag gagagatcat tgagttagct
      721 ggttgcgacc gtttaaccat ctcaccaccg ttattaaaag agctacaaga gagcgatgaa
      781 aaattagttt gcaagctaga ttacaaaggt gaaatcaagc ctcgtccaga aaaaatgaca
      841 gaagcagaat tctactggga gcataaccaa gagccaatgg cagtagaaaa attagctgaa
      901 ggcattcgta aatttgcgat tgaccaagag aagttagaag caatgcttgc tgaaaaactt
      961 caatagacaa cgcataaaaa aaccggcatt aacgataatt aatgccggtt ttaatttcta
     1021 taaatgatta tttaaactca taacgtctaa tcgtttttag atcgctatct tcatttttaa
     1081 tttcatcggc aagatgaaca cgagcaccaa ccgctgcatg tgcatcatac tcacgagtta
     1141 gagtcacagt ttcaccatta tctcgttgaa ctgtaagttc aacaacatcg tttgatactg
     1201 ctttgctaga taaatgttgc attaccttta tcagaataaa catctgcagt acaagctgct
     1261 aacataagtg aagctaatac agctaaagaa agttttttca ttaataatat atcctctagg
     1321 aaaaactaaa attaaagcag agaaacattc aggtctgaat tagaccctac gattctcaca
     1381 cgtttgccag gcacaaaacc gtcttctttc ttttgaacga ccacgatttc tttaccatca
     1441 tctttgcgaa taaccatttc caatgaagaa acttgactcg ctttttgttc tacttgatta
     1501 ccaattaccg caccggcaac tgcccccact gcggttgcaa tcgcttgccc tgtaccaccg
     1561 ccaatcgcat taccggcaac gccacctaat acaccaccgc cgacagtacc gatcacacct
     1621 tcactgcgtg cttgaatttt cacatcacgc actgaaacaa tagtgccata agcgatagaa
     1681 cgagcttctt ttgcctgctc accggaataa acgcttccgc taaacacgtc tgtatttgca
     1741 cagccaacta aagcaaaact tgacattaat gcgacagcta aagctaattt tttcattttg
     1801 tttgttctcc gaaacgttaa ttttctgaca taattacact ttttatatca taagggtgga
     1861 gctttagaca ataaggatta caaaaagtta catttctcaa gctgatcgca atgcttggat
     1921 ttggcaatct ctccccttct acctgaggtt ggctgatttt taatttaatc tcagaattat
     1981 cagcaagtct aaagtgcgac aatgcccttg acacccattg ttccgaactt tcgttgtcta
     2041 acatcggaaa aaccagctca atatgttccc agccttcttc taaataaacc ttatttttcg
     2101 gaaaaggcaa ctcgacaatc tttacaaatt gtccgcaaaa ttcaaccgct tgtattaatg
     2161 caaacagccc tatcggtctg ccgtttacct cgctctcttt aagtaaggtt gccccatcaa
     2221 gcaaaaggat cttccactgt tctgcggttt cggtttggtt cattcttacc gcaagatgat
     2281 cgatttcata cgctgctaaa tcaatgccgg cgatttcagc aatttgtcgg attttctgtt
     2341 caaattgcga taaatcgcca aaacaagcgg tcattttctc gaaaaatttt gcattttctg
     2401 ctataatttt gtccattttt ttgtaaatag aatttaaata ggttaaacag tgaatattca
     2461 acaaatttta tcagataaaa ttaaacaggc aatggtagca agcggtgcag acagcaatgt
     2521 cgagccttta gtccgccaat cgggcaagcc ggaatttggc gattaccaag ccaatggtgc
     2581 gatgggtgca gcgaaaaaat tggggatgaa tccgcgtgaa tttgcccaaa aaatcttaga
     2641 gaatgccgat ttgaacggta ttgccgataa attagaaatt gccggtccgg gctttatcaa
     2701 cattttctta aacccagaat ggctggcgga gaacactaac agttcattgc aagcggtcaa
     2761 ttttggcata aaaactgcaa atccgcagac gattgtgatc gactactcct cgccaaacgt
     2821 agcaaaagaa atgcacgtcg ggcatttgcg ttccaccatt attggcgatg cggtagttcg
     2881 tacccttgcg tttttaggca ataatgtgat tcgtgccaac cacgttggcg actggggtac
     2941 tcaattcggt atgctgatcg cttaccttga aaaaatggaa aatgagcacg ccagcgaaat
     3001 ggagctaagc gatttagaag ccttctatcg tgcggcaaaa gagcattatg attcagacga
     3061 agcattcgcc gaaaaagccc gtaactatgt ggtgaaatta caaagcggcg ataaatattg
     3121 cttaacaatg tggaaaaaat tggtcgatat tacaatgcac cacaatcaag agaactacaa
     3181 tcgcttaaat gttacgctca ccgaaaaaga tgtaatgggc gaaagcctct acaatccaat
     3241 gttgcctgaa attgtggcgg atttaaaagc caaaggctta gcggtggaag atgacggtgc
     3301 tttagtggtt ttcctcgatg aatttaaaaa taaagatggc gacccaatgg gcgtaatcgt
     3361 gcagaaaaaa gatggcggtt tcttatatac cactaccgat attgcggcag caaaatatcg
     3421 ctacgagacc ttaaaagctg accgagcctt agtcttttct gacagccgcc aagctcaaca
     3481 tatgcaacag gcatggctca ttacccgcaa agcgggctat gtgccggaca gtttcagcct
     3541 tgaacacccg ttcttcggaa tgatgctagg caaagacggc aaaccgttca aaacccgtag
     3601 cggtggcaca gtcaaactca aagatttatt agatgaagcg gtagagcgtg ccgataaact
     3661 gattgccgaa cgttcaaccg agctaactgc ggaagaaaaa gccgccgtgg ttgaagcggt
     3721 tgcgattggt tcggtgaaat attctgactt atcgaaaaac cgcaccaccg attatgtgtt
     3781 cgattgggac aatatgctga cctttgaagg caataccgcc ccgtatatgc agtatgccta
     3841 cacccgcatt cgctccatct ttgcccgtgc gaacattgac gaaaatgcat tgagcggttc
     3901 aatccaactc aatgagccaa aagagcgtgc attagcagtg aaactattgc aatttgaaga
     3961 ggcattaaac ggcgtggcaa aagaaggtat gccacatatt ttatgccaat atttatacga
     4021 gcttgcaggt agtttctcca gtttctacga ggcttgcccg attctcaatg ccgaagaaac
     4081 aaccaaaaac agccgtttga aactcgctgc cttaacggcg aaaaccttga aacaagggtt
     4141 ggatttactc ggtattaaaa ctgtagagaa gatgtaatac aaactctctc cccttgtggg
     4201 agagagaccg cttatgagcg ttcagcgaaa taagcagaga gaggggacaa gcggtaattt
     4261 ttattaaaat ttttacacat tttcccctct ccctgatttt tcttctgaac gaagaaaaat
     4321 ctgtccctct cccacaaggg gagagggcat ataaaaggaa acaaatatga aatttattga
     4381 cgaagccctg attcgtgtag aagcaggcga tggcggtaat ggctgtgtga gcttccgccg
     4441 tgaaaaattt atcccgaaag gcggacctga cggtggtgat ggtggcgatg gtggtgatgt
     4501 gtatttaatt gccgatgaaa acctaaacac ccttatcgac taccgctttg aaaaacgtta
     4561 tgccgctggg cgtggcgaga atggtcgcag tgccggctgt accggacatc gtgggcaaga
     4621 tattacccta cgagtgccgg ttggaacccg tgcgattgat aacgacaccc aagaaattat
     4681 tggcgattta acccgccacg gaatgaaaat gctggtggca aaaggtggtt atcacggttt
     4741 aggtaatacc cgctttaaat cctcagtaaa ccgagctcca cgccaaaaaa ccaacggtac
     4801 gcctggcgaa aaacgtgatt tgaaattaga gctgttactg cttgccgatg tgggaatgct
     4861 tggcttacca aacgccggta aatccacctt tatccgcagt gtctctgctg ccaaaccaaa
     4921 agtggcggat tacccgttca cgacgctggt gccaagttta ggggtagccc gtgtgggggc
     4981 cgaccgcagt tttgtggttg ccgatattcc ggggttaatt gaaggtgcag cagatggtgc
     5041 agggctgggg attcgtttcc taaaacactt ggaacgttgc cgtattttga ttcacttagt
     5101 cgatattatg ccgattgatg aaagcgatcc ggctcataat atttcggtga ttgaatccga
     5161 gctttaccaa tacagcgaaa aactcgccga aaaaccgatc tggttggtgt ttaataaaat
     5221 tgacaccatc ggcgaagaag aagctgctga gcgagcaaaa gacattgccg agcaaatcgg
     5281 ctgggaaggc gattactact tgatttctgc cgctaccggt caaaacgtgc aagctctcac
     5341 tcgtgatatt atggacttta ttgaagccaa cccacgcgaa gtggaggaag aaaataaagc
     5401 acctgaagaa gtcaaattca aatgggaaga ctaccacaac gaagcaatgc aaaatgcggt
     5461 agaagaagat tgggacgacg attggagcga agaagatgac gaaggcatag agtttattta
     5521 cgaacgccat tagtgcaata atacaagcgg ttgtttttaa acggagattt gcaaatttcc
     5581 ggagaaaaac aaccgcttgt aggtttaagg agagtttatg cttagctcaa catcgtgcga
     5641 tttattcaat attccgttct tccaatttgc tcagatgaag aaatattgcc ctgaggagat
     5701 ccctcgaatt aaggcggaat ataaaactca atgggaaatt tggaaaaagc tacatcagga
     5761 agtttctcgt cagcttgggc agccgtttgc tccaccacat attgagaagt ggtgcaacgg
     5821 ttggcaagtt cgagcccatt tttttgccta ttacaagtat gaatttaatc gaaattctgc
     5881 ggctattctt tccgtgattt taaatcgtcg ccgtttgcaa gtgagccttg attggcattg
     5941 ttatcgagcc gatcgctcgc aaattaacgt gcatcaatac aatcaatggt gggaaaattt
     6001 agatcgggaa aagtttgctg attttgagat ttggcacgga agtgagagtg aatatgatga
     6061 ttttagaacc gttagtcaga tgtcagagca agcgttcacc ctaactaacg aggaagattt
     6121 ttggtgtatc ggcaaaaatg tggaaaagga cgatttggat aacattgatg tagtagaatt
     6181 tatctaccaa accattcggg cattattgcc actttatgag aaatgtcatc aataaacact
     6241 aaaaagagag gcgaacatca tttgttcgcc cctttcaaaa tttaagctat cacttctttt
     6301 ttattttcaa tgcgtaaacg gtagcgttta tccaacatac agagtaaacc accgagagcc
     6361 ataaacagcc cgccaatcca aatccagcga atgaacggtt tataatacaa acgcactgcc
     6421 caagagttat cttctaattt ttcgccaagt gcagcgtata aatctcgggt aaagccccag
     6481 tcaatcgccg cttcggtcat tcccattcgg ctcaccgtat agaaacgttt ttcagcatta
     6541 agtgtggctt catatttacc gtttcgagta atttcaagct cggcagtgcc gccttgatag
     6601 tttgccccat cggtgatttt aataccttta aattcaaatt ggtaatctaa aatctcagct
     6661 ttatcaccca cattcattct gacatctcgt tcaatgctga aattttggct aaatgcaatg
     6721 ccgaacactg tcatcgcaac ccctaagtga gccagcacca ttccccaatg tgaacgggac
     6781 agtttgaaaa tgccacttaa gaacgagtgg cgatgggttg cacgttggtg tagctcatac
     6841 aggctaagta acacaataaa gacagacatc atcgtgccta acaccacact cacggtaatg
     6901 gtgttacgga ataagtatgg caatccgaat ccaagcaatg ccattaaaat agttgcaata
     6961 attaccggtt tacgaatagc agaaacttgg tctctacgcc atttcactaa tggtccaatc
     7021 cctaatacaa atgagaaagg aaccattaaa attaagaaca tttggtcaaa aaatggtgcc
     7081 ccgattgaaa tcgtccctaa gccgatttgt ttgtgaatta atggcagtaa ggtccctaaa
     7141 aacaccaccg ataaaaatgc cattaataaa atattattaa tgagtagcat cgtttctctt
     7201 gaatagcgtt catagttatc taagctttta atttccgagc ctttgaatgc atacagcagt
     7261 aaagaaccac ctactactaa caccaagtaa gccaagatgt ataaaccacg agttggatct
     7321 gaagcaaagg cgtgaactga caccaaaatg cctgaacgca ctaagaaagt ccccactaaa
     7381 cagagcgaga aagcaagaat cgctaataag accgtccacg ctttaaatgt gcctcgtttt
     7441 tcagtcactg ctaatgaatg aatcagtgct gttcctgcga gccacggcat taatgaggca
     7501 ttctcgacag gatcccagaa ccaccagcca ccccaaccaa gttcgtagta tgcccaccaa
     7561 gaaccaagca cgataccgag cgttaaaaat acccacgctg ccattgtcca cggacgagac
     7621 catcttgccc acgcagtatc taaacgccct gtcatcagtg aggcaatcgc aaaagcaaag
     7681 gcaacggaga aacccacata gcccatataa agcaacggtg ggtggaagat caagcccaca
     7741 tcttgcagca ttgggtttaa ttctttgcca tcaatcggaa aatttgggaa agttctatca
     7801 aacgggttgg aggtaaaaat cacaaacatc aaaaagccga tgccaatgac ccccattagt
     7861 cctaacactc gagcaacggc atcttccggc attttacggg taaaggttgc taccccgaca
     7921 gaccaaagcg acaacaacca aacccaaagc aataatgagc cttcgtgagc gccccacacc
     7981 gcagataaac gatattgcaa cggtaaacgg ctattggagt tgttcaccac atattgcacg
     8041 gtaaaatcat tcaccgcaaa cagataaaac agcgaaccaa aagagacagt caatgccaaa
     8101 aacattgccc aagtcatcgg gcgggcaaga gcaattaagg tgctattttg cttttctgct
     8161 ccccaaagcg gtaaaactgc caacaagata gaaatcgcta gggctaatgc caacgtataa
     8221 ttgcctaatt ctgcaatcat ttgctttccc cttgcacatt gttggctttt tctgcttccg
     8281 cctcggcttt cattttgcgg tcggtttccg attcaccttt cagatcttgt tcagacacac
     8341 ctgatttttt atgctgttct tttaatttat cgcctaattc cggtggcata tagttttcat
     8401 cgtgttttgc cagaacttcc gtagctttta aacgggttgg ttcaatcaac acgccttgtg
     8461 ccacaatgcc ttgcccttca cggaataaat ccggcaaaat tccttcgtat tccacggtaa
     8521 tcgaaggccc gatatcattg agatcaaata ctacttttaa acttttatca tcacgcttta
     8581 ccgtatcttc cactaccatt ccgcccacac ggatacgctg accaacttca ggcttttgtt
     8641 tcggatcatc atttttaccg tttacaattt cagacggcgt gtaaaacaga tcgatatttt
     8701 ggcttaacgc ataaagtgtc aagcctgctg cgacagaaag cccaagtaat atcgaaacca
     8761 ccacttttaa tcttgatttg cgtcttggat tcatcgtaat cacccttcaa aataaatgca
     8821 aaattgcata aaaactcaaa aataaattag tgtaagaata gcaaaaaacc gcaaaacatt
     8881 cccgatattt caaggaagtt ttgcgatttc tcaaatcaaa tacctataaa gaagtatgag
     8941 gctatcgttg caaaaaataa agttatttcg accgcttgtt tattgtgatg tttgctttaa
     9001 tttttcttca cgcacaatct ctttttttgc ttgagccaaa atcgctttct gttcacggcg
     9061 actaagccaa atcagcccaa tcattgcaat gaaactgaca ccataagaga gccatacata
     9121 aaagccgtag ccacccattg caaaaaaatc gctgattgat tcaaattgaa atgtcattgt
     9181 tctctcctac tctaaactga ttttgccagt tgttttaccc aagggcgatt acgttcgtcc
     9241 tttaataagg caatgcgata acgccaaatg ctaaaccaag cggtaaaaat taagctaccg
     9301 aaaatcgcca atagcaacgg aattaacatt tccaccgcca tagacggttt atcgaattta
     9361 gtgatggtcg ccccttgatg caaggtgttc caccattcca ccgaaaagtg aataatcggc
     9421 aagttaatca cgccaacaac tgacagcaca gccgccgctt tggctccggt ttgtctgtct
     9481 tggaatgcgg aataaagagc catcacgccg atataaagga aaaataacac taaagcggag
     9541 gttaaacgag cgtcccacac ccaccaagtc ccccacattg gtttgcccca aattgcaccg
     9601 gttgcaagtg aaataaaagc gaatactaag ccgataggtg ccattgaaat catcgccaag
     9661 ttagcttggc gaatttgcca aaccaatgcc accaagcctg ccaccgccat tgagccatat
     9721 acgcccatcg accaaattgc tgccggcacg tgaataaaga taatgcgata gctatcgccc
     9781 tgttggtaat ctttcggggc aaaagccaag ccccaaacaa aagcagccgc taacataatc
     9841 aaacttagcc aacctaaaaa cggttggatt ttccctagca aatggtactg cgtttccgat
     9901 tttgcataag ggtgtagcca tttccacata tatttctcca aagtaaataa ttcccctcac
     9961 ccgtttacag gagagggacg atttgagctt cgttcagaag cgaaaatcag ggagagggga
    10021 aaaagttgca aattttcata ataattcgac cgcttcccct ctctctgaaa aacacctctg
    10081 aacgaggtgt ttttcggtct ctctccctca agagggagag aggaagtttt agttcaaact
    10141 aattcttaat gcaccggcaa tcgcaaacgg cgaaaaagtt aaagtaaccg ctaaaattgc
    10201 tccgataatc gccagttgtc cgctataacc catatttaag gtggcggctt ctaataccgc
    10261 agcggcaaaa atcagtaccg gtaagaataa cgggaggatt aataaactca gcaacgtacc
    10321 gcccttgcgt aagcccacag tgagtgccac gccaatcgct cctaagcagc ttaaaatcgg
    10381 ggtgccgagt aataatgtca gcactaacgc ccaccaaacg tgggtttcaa gtgaaagcaa
    10441 aatggcagca atcggtgaaa gtaaaatcaa cggtaagccg gtcagcagcc agtgagcaat
    10501 cactttcgct aacgcaacct gcggcaaggc aagcggcagt aacattaatt gctcgagcga
    10561 accgtctaaa taatcatcac ggaataaccg ctcaaaggaa agcaatgcag aaagcaaagc
    10621 agctacccac gcaatgccgc cggcaatttt gcctaataat tcggggttag gtcccattaa
    10681 aatcgggaat acggtaatca ccattaaaaa aaaccacaac ggatttaaaa tctccgaggg
    10741 tttacgaaag gcaatggtga gttcccgctg aataatagtc aataaaatca tactttaaat
    10801 tgatctaacg aaataatacg cactttgtcg ctttcagcag cctggtggct ggtaaaaatc
    10861 actaatctgc cttgctcgca atgctgttca atatgagcaa tcagatccgc cacacccttt
    10921 ttatcaatag cggtaaaggg ttcatctaaa atccaaagtt tggcgttagt gagccacaat
    10981 tttgccaacg ccacacggcg ttgctgaccg gctgacaaat gcgaacaagg caaatcttca
    11041 cgcccgatga gcgacacttt cgtcaatgcg tgccaaaggg catcatcatc ttgcggtaac
    11101 tgttggattt tctggtagaa acgcaaattt tcccacggtg ttaattccgg ttttaccccc
    11161 gaataatgcc ctaaataaaa tagttcagaa taatagtgat cacgctgttt ttgaattgca
    11221 atatcgttcc acagcacctc accttccgca ggtaaaaaaa gcccggctaa aatacgtaac
    11281 aggctggttt ttccaatgcc gttatgccct tcaatctgca cccattcacc actttgcacg
    11341 gtaaaactgc acccttcaaa caaacgggtt tcgccccgtt cgcaggcaat ctgattaagt
    11401 ttaagctgat attgggccgt ttggttcatt atttttcatc tggttgaaca ttttagccga
    11461 agtgtatcat aagcctttga tttaacgtag caaataaatt acttctttag aggtagcaag
    11521 cggtcaaatt ttcaaaaagt tttgcaaatt ttgataagaa tcaaaccgct tgttacagag
    11581 agaggatttc cttcacaaaa ggaatggtta atttacgctg ggcttggaga gacgctttat
    11641 ccaacttatc caatatttta gagagttgct ctaaatccgt tcccgctttt tttaacagaa
    11701 aatgagcgac ctcatcggac aattccaccc ctttttggtg agcatttaac tgtaaaattt
    11761 ggcatttttg ttcatcggtt aaatcgttta gctggtacac ttcgccccaa gttaagcggg
    11821 aacgtaaatc cggcaattgg atattgagtt ggtgtggtgg gcaatcggca ctgattaaca
    11881 gcaaggtttt ttgcccttcg ttaaacaagc cttgttgttc tcgaatttgg ttaaacaggt
    11941 taaaaatagc aagttcccat tcagcatctc ctgcaatcgc ttgaatatca tctaggcaaa
    12001 tcacattcag cagttcggca ttatctaaca ccaacggcga gaaataattg gctttagtga
    12061 gcggaatata actagaagtt tggttattta aaagaaagtg gttacttact gctttcaaca
    12121 aatgactttt accgcagctc ttaccgcccc aaatgtaaaa aaacggctgt tgaacatccg
    12181 taaaatttcg tttgagggat ccaagcaaca cttcgctgtt ttggctataa aaattgtcga
    12241 aagtgtcttc atcaatttga tgaatgggta gaggtaactg caaggctttc cttaaatctc
    12301 taagtttgat atttttctaa gaatagcgga aaagcagggg tttgagaagt aaaaatagtg
    12361 agaaaatatc cactcatttt tctaatgaag agatgacaag cggttgaatt tccacataat
    12421 tttgtcaatc tgaccgaaaa cccaccgttt tgtgttaaaa aaagattgca gttagctcaa
    12481 aaaattgtat attcaaagct ttctacttaa aaagtagagt aaaacaacta ttacaaacac
    12541 aacggagtga atatgaaaaa catgactaaa ttatcgctaa taacattagc gctagccgct
    12601 tcaagtagcg tctttgctgc accgaaaacc tttgtttact gcttagaggc ttcgccttca
    12661 gcattaagcc cagtgctatc aacagacggt gcaagctttg atgtgaacgc cctcccgatt
    12721 tataacaaat taaccgactt tgaagacggt acaactaatg ttattccctc tcttgccgaa
    12781 aaatgggaca tttcggaaga cggcaaaact tacaccttcc acctgcgtaa aggcgtaaaa
    12841 ttccacgaca ataaagaatt taaaccaagc cgtgagttaa atgcagacga tgtagtgttc
    12901 tccattaacc gtcagtttga tccaaaccat ccattccaca aagtttccgg cggtaactac
    12961 gaatacttta tcggtatgga tatgcaaaat attatcgata aagtggaaaa agtggacgat
    13021 cacaccgtta aaatcagctt aaaagtgcca aatgcgccgt tcttagctaa cttagcgatg
    13081 gatttcaacg ccgtttactc agcggaatat gcagagcaat ccttaaaggc cggcaagcct
    13141 gagcgtattg ataccaaccc aatcggcagc ggcccgttcc agtttgtgga ttaccaaaaa
    13201 gatgccaccg ttcgttacaa agcctttgaa aactactggc aaggcacagc gaaaattgac
    13261 cgcttagtgt ttgcaattac tccggatgca tcggtacgtt tagccaagtt acaaaaaggc
    13321 gagtgccacg caatgcctta ccctaacccg gctgatatcg aagatctgaa aaaagatcca
    13381 aatattgaat taatgagcca atctggaatg aatatcggct atttggcatt aaattcatcg
    13441 attaaaccat tagataacca aaaggtacgt caagcattaa atcacgctgt aaacaaacaa
    13501 gcgattgtag atgcggtata tcagggagcc ggtcaagtag cgaaaaaccc aattccacca
    13561 acaatgtgga gctataatga agcggttcaa gactatgact acaaccctga aaaagccaaa
    13621 gcattgttaa aagaagccgg ttttgaaaat ggttttgata ctgaactttg ggcaatgccg
    13681 gtatcacgtc catataaccc gaatgctcgc cgtatggctg aacttatcca agaagactgg
    13741 aaaaaagtgg gcgtgaatgc gaaaatcgtc agctatgaat ggggcgaata tctcaaacgc
    13801 ttacgccaag gtgaagcggc aacctcaatg attggctgga caggcgataa cggtgaccca
    13861 gataacttcc tcaacacctt attaagctgc tcagcggtgg aagccggttc aaactacgcc
    13921 aaattctgcc acaaaccgtt tgaagaagtc gtgcttggtg ctgcccaaga aagcgacaaa
    13981 gcaaaacgta ccgagcttta taaacaagct caagtgatct tcaaagagca agctccttgg
    14041 attacgattg ctcactccac cgtttacttc ccggtgcgta aagaagtaaa aggttatgtg
    14101 atgagtccgt tcagcttaca taacttctac aaagtagatt tagcggataa ataatccgcc
    14161 aacaagcggt agaatttgca gattttttta caaatttgac cgcttgtcct cccctctttg
    14221 aactacgagg ggcagggggg aaatttggca gaagcgattg ccgaagtgag aggattgtaa
    14281 aagaggaaat aaattttctg tcttattgat tattttcttc gttaattact actgtcaaat
    14341 ctcccctacc ccctctttgc taaagagggg aatcagatcg agagatcaga caactttgat
    14401 gaaaatccaa cctaagagat tttaaatgtt ttcatttatt ttaaaacgtg tgctaatggt
    14461 gatccctacc tttatagcga ttacgttaat tacttttgcc cttgtgcatt ttatccccgg
    14521 tgatccaatt gagatccgaa tgggggaacg tggattatcg cctgaggttc atcaacaaat
    14581 gatggaacaa ctcgggctga accgaccgtt gtttgaacaa tacatcagct acatcaaagg
    14641 tgtattgcac ggtgatcttg gtaactcatt tcgtaacaac gaaccggtgc tgaaggaatt
    14701 ttttacccta ttcccagcca cggttgagtt ggcatttttt gccctgctct ggtcgttgat
    14761 tttcggcatt attctcggtg tgattgctgc ggtgaaaaaa gaaagttgga tttcacacac
    14821 tgtaaccacg ctttcactga ccggctactc aatgccaatt ttctggtggg gcttgatttt
    14881 aattctttat ttctccaccc cgctcggctt accggcttca ggtcgtttac catctgaata
    14941 ctggattgaa gccgaaaccg gttttatgct gattgatact tggaattcgg acgaaccagg
    15001 ggcattttta gcggcaatta aatctctgat tttgccgtct atcgtactgg ggacaatccc
    15061 tcttgcagtt gtgacccgaa tgactcgctc ttcaatgttg gaagtgttgg gtgaagacta
    15121 tatccgcacc gccaaagcca aaggcttaaa cactacccga attgtgattg ttcacgcatt
    15181 aagaaatgcc ttgattccgg tggtaacggt cgttggctta attgtcgggc aactgctttc
    15241 aggagccgtt ttaacggaaa acatcttctc gtggccgggt atcggcaaat ggattattga
    15301 tgcaatcaac agccgtgatt accctgtact acaaggctca gtgctgatta ttgctactat
    15361 tattatttta gtgaacctta cggtagatct actctatggc attgtcaatc cgaggattcg
    15421 acatagttag aaaaattcct tcgatttttc ccctctttag caacgaggga gttacacaag
    15481 cggttcaaat tccgcaattt tttacaagat tatttttagt tggagttaat gatgtcagga
    15541 ataacggcgg taaatccacc cgcacccaaa acaccgttac aggagttttg gtactatttt
    15601 tgtcaaaatc ggggggcatt aataggactt acctttattg caatcgtctt tgttgcgtgc
    15661 gtattcgcac cttgggttgc cccttttgat ccaatcgaac aaaatcgcag tgcgttattg
    15721 ctccctcctg cttggcttga aggggggaat tccgctcatc tgctgggtac tgacgatatt
    15781 gggcgtgata ttctttcccg tattatttat ggttcaagat tgtccgtctt tatcggctta
    15841 gtcattgtgc tactttcttg cgtattcggc gtgattttag gtctacttgc tggctactat
    15901 ggtggcacac tcgacatcat cattatgcgt tttgttgata ttatgctggc gattccaagc
    15961 ctgcttttaa ctatcggcgt ggtcactatt ttaggccctt cattgataaa tgccgctatt
    16021 gcgattgcga ttgtctccat tccaagttat gttcgcttga cccgtgcttc tgtattaagc
    16081 gagaaaaacc gtgattatgt tactgcttct cgtgttgctg gtgcgagcgt gcttcgctta
    16141 atgtttgtgg tgattttacc taactgttta gctccgctta tcgttcagat gacgatgggg
    16201 atctcaaacg ctattttaga acttgccgcc ctcggcttct taggcattgg tgcacagccg
    16261 ccaacaccgg agcttggcac aatgcttgcc gaatctcgtg gctttatgca atcggcaaac
    16321 tggctggtga ccattccggg tctagcgatt ttatcgttag tattagcttt caacttaatg
    16381 ggtgacggct tgcgtgacgc cctcgatcca aaactgaaac aataggagat ctaaaatggc
    16441 attattaacg gttgatcaac tttccgtcca ttttggtgaa actaaaacac catttaaagc
    16501 ggtggatcgt atcagttacg aagtcaatga aggcgaagta ttaggcattg tgggcgaatc
    16561 cggttcagga aaatcggtaa gttctctcgc tattatgggc ttaatcgatt tccccggcag
    16621 ggttatggct gaaaaattgt attttaacgg caatgattta ttggcattaa aaccaaaaga
    16681 aaaacaacag attgtagggg ctgatgtctc aatgatcttc caagatgcaa tgaccagctt
    16741 aaatccgagc tatactgtgg gctatcagat tatggaagcc ctaaaagtgc atcaaggtgg
    16801 ctcaaaagcc agccgtcgtg agcgagcgat tgagttgctg acgatggtcg gtattcccga
    16861 tcctgaatcc cgtttagaag tttatccgca ccagctttcg ggtggtatga gccagagagt
    16921 gatgattgcg atggcgattg cctgtcgccc gaaattattg attgccgatg agccgactac
    16981 tgcgttagat gtgacgattc aagctcaaat cattgattta ttacttgaat tacaacgcaa
    17041 agaaaatatg gcgttgattt taatcacgca cgatttagcg ttagttgccg agtctgccca
    17101 tcgcattatc gtgatgtatg cagggcaagt cgtggaagag ggcaaagccg agcagatatt
    17161 caaagcacca ctgcaccctt acacccaagc attgctcaaa gccttaccgg aatttgccga
    17221 agggaaatcc cgcctgcaat cactaccggg cgtagtgccg ggcaaatatg accgcccaca
    17281 aggttgctta ctcaaccctc gctgcccgta tgcaaccgaa aaatgccgaa ccattgaacc
    17341 ggcaatgcag ataatcaacg gcagacaggt gaaatgccac acgccactga atgcacaggg
    17401 tgagccgata aggatagctg tataacgtca taaagagtag ggacgcaatg cttcgcgtcc
    17461 gttacaagcg gtgattttta accgattttt gcaaaataac gatagtggac gcaaagcatt
    17521 gcgtccctac attttccgag aaggaaaaca gaatgaaaga aaataattct ctcccaccat
    17581 tcctcaaagc agtggactta aaaaaatact acccagttaa aaagggaatg ttcgctaaac
    17641 cgaaaacggt aaaagcgctg gatggtgtct cttttaccct tgaacgtggc aaaacccttg
    17701 cgattgttgg cgaatccggc tgtggaaaat caactttggg gcgaatgctc actatgattg
    17761 aaagcccaac cgaaggtgaa ctgttctaca acgggcagaa tttcttagtc aatgacaaag
    17821 aaacggctca actacgccgt aaaaaaatcc aaattgtgtt tcagaacccg tatagctcgc
    17881 tcaatccacg caaaaaagta ggtagcattt tagaagaacc attattgatt aacaccaact
    17941 tatccgcaaa agaacgcaaa gaaaaagtgt tggaaatgat ggcgaaagtc ggcttaaaac
    18001 cggaatttta cgaccgttat ccgcatatgt tttcgggcgg acaacgccag cgaattgcga
    18061 ttgctcgggg cttaatgttg cagcctgata ttgtggttgc cgatgaaccc gtttccgcat
    18121 tagatgtttc ggttcgggcg caagtgttga atttgatgat ggatttgcaa gaagaaatgg
    18181 gcttgtctta cgttttcatc tcgcacgatt tatccgtagt ggaacatatt gccgatgaag
    18241 tgatggtgat gtatttaggg cgttgcgtag aacaagggga taccaaaact atcttcagca
    18301 atccacgtca cccttataca caagcgttac tctccgcaac ccctcgtttg aacccggagc
    18361 aacgccgtga gcggattaaa ctgactggcg aactaccaag cccgcttaat ccaccaaaag
    18421 gctgtgcctt taacgcccgt tgcagatttg caaccgatcg ttgctatgtg gagcgaccag
    18481 agctgaaaac ctatcaagac ggtactcgca ttgcttgttt tgtggtggag gaaaataatt
    18541 aggcaacgct cgctatttaa aaggttaaag tttttcaact ttaaccttta tttttcatac
    18601 ttaatactcc tcatcttttg tagcaaaatc tttcattaat ttgctgatat gctcacaatg
    18661 gtgtttaaat gacaatacgg gcaaataatc aaatgcgttt taacgccaat cttctctttt
    18721 aaagtgagtt ttcgttcctt tgagtcagaa attaaccttg ttacttgtcg gcaattcatc
    18781 tatttctctc cgttaatttc cttgaaagac attgttgtaa ctgcagcctt gctcgataga
    18841 ttaatgtata taaattatct gatgtaatat ttactactcg acaaatttca tctgaggttg
    18901 cctctaaata ttccctcatc ataaataccc tagcttgttt tgcaggtaaa ttgcttaagc
    18961 aaacttcaaa taatatccaa aattctttgg aataaacagc ttcttcctgc cagctagaag
    19021 gataatattc ttctttccaa tgcccataat tatcaaaaaa gtgattctct tcgtcatcat
    19081 c
//
LOCUS       DANLXK010000041        18211 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.041, whole genome shotgun sequence.
ACCESSION   DANLXK010000041 DANLXK010000000
VERSION     DANLXK010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18211
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(161..4147)
                     /gene="hrpA"
                     /locus_tag="PXD88_001172"
     CDS             complement(161..4147)
                     /gene="hrpA"
                     /locus_tag="PXD88_001172"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL6280757.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSTACGGGLGRGEIRSNDGTPPLPTSPRK
                     RGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEK
                     QQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFRNLCRKDYLNYNRVREWQ
                     DIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGLKDNEKMHYLGARNAHFF
                     IFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAVHLTKSSYSEPHWAK
                     SKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSREIFIRSALVEGECHNNYKFFKEN
                     HRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSSKHFDTWWKQASKKDPEL
                     LNFEKSFLINDNANLASELDFPNFWHQGDLKLKLSYQFEVGKDHDGVTVHIPLPLLNQ
                     VEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRAEPFKKPLLDNL
                     SHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQESENLDELKFALKDEVQ
                     NTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFETE
                     FEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCIACAV
                     DQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEKCLTLAYELNKRLKGKLD
                     FTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAIERRLDKLLVDSNTDRAK
                     MLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRI
                     LNVINEIK"
     gene            complement(4251..4703)
                     /locus_tag="PXD88_001173"
     CDS             complement(4251..4703)
                     /locus_tag="PXD88_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL6280758.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            complement(4766..5035)
                     /locus_tag="PXD88_001174"
     CDS             complement(4766..5035)
                     /locus_tag="PXD88_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280759.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            complement(5133..5729)
                     /gene="grpE"
                     /locus_tag="PXD88_001175"
     CDS             complement(5133..5729)
                     /gene="grpE"
                     /locus_tag="PXD88_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL6280760.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            5951..7045
                     /locus_tag="PXD88_001176"
     CDS             5951..7045
                     /locus_tag="PXD88_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL6280761.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            7181..8572
                     /locus_tag="PXD88_001177"
     CDS             7181..8572
                     /locus_tag="PXD88_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL6280762.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            8631..12155
                     /gene="recB"
                     /locus_tag="PXD88_001178"
     CDS             8631..12155
                     /gene="recB"
                     /locus_tag="PXD88_001178"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL6280763.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(12197..12679)
                     /gene="greB"
                     /locus_tag="PXD88_001179"
     CDS             complement(12197..12679)
                     /gene="greB"
                     /locus_tag="PXD88_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL6280764.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(12730..14010)
                     /gene="pepB"
                     /locus_tag="PXD88_001180"
     CDS             complement(12730..14010)
                     /gene="pepB"
                     /locus_tag="PXD88_001180"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL6280765.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            complement(14149..14970)
                     /locus_tag="PXD88_001181"
     CDS             complement(14149..14970)
                     /locus_tag="PXD88_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL6280766.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            15118..16061
                     /locus_tag="PXD88_001182"
                     /pseudo
     CDS             15118..16061
                     /locus_tag="PXD88_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            complement(16174..17337)
                     /locus_tag="PXD88_001183"
     CDS             complement(16174..17337)
                     /locus_tag="PXD88_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL6280767.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(17403..>18211)
                     /locus_tag="PXD88_001184"
     CDS             complement(17403..>18211)
                     /locus_tag="PXD88_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL6280768.1"
                     /translation="PFRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFATGR
                     NHPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDDQNV
                     CLNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEALVP
                     IEHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGDGMN
                     DVEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
BASE COUNT         4924 a         3804 c         3955 g         5528 t
ORIGIN      
        1 ttctgatata tttagttttc taatttttat cttgagattt ttttaatcaa aaaaatgtag
       61 caggtttgct tctgaagcga gaggaatagg tattcgagaa aacaagcggt cagagttgca
      121 aaatttttta cttatctgac cgcttgttgt atagggaata ttactttatt tcattgatca
      181 cattcaaaat ccgcttatcc gaaatcgggt attttgtgcc gagctgttga gcgaacagac
      241 tgacccgcag ttcttcgatc atatatcgaa tttccagtac ctcgtccggc accgctttgg
      301 attttggcag tttggcaagg agctgtttat atgcctcttg cactgcttcc acccgtagca
      361 ttttggctcg gtcggtgttg ctgtccacca acagtttatc caaacggcgt tcgatagcgg
      421 tcaaataacg gtataaatct gcaaggcggg cgtagccggt tttggtgaca aagtcggggt
      481 aaatcagccc ttcgatttgg gttttgatgt cgcttaacgc aaacgccatc gtaaaatcga
      541 gcttgccttt taaccgcttg tttagctcgt aggccagtgt gaggcacttt tcaacctgtt
      601 tggcaatttc tacggtttta tcgtttaaat ttgcccgcac aaattcgtgc agttgggtga
      661 atttttcctc cgtccagaca aacccgccga actcttctac cagctgatct accgcacagg
      721 caatgcagtc gtcaatcagc tccaatactt tgccgaacgg ggcaaaatat aagcccagct
      781 tggctttgtt cggcagtttt tcgtgtagat atttaatcgg cgatggcaca tttagcaaca
      841 gcagacggcg aagtcctgcc tgcattgcac gagcctgctc aaattccgtt tcaaacagtt
      901 tcacccccac agccgtttgt tcatcgacaa tcgcagggta ggctttcacg ctgaaatggg
      961 cttttttctg ctcatagaac tgtggcaatt cggcaaaatt ccaaatatgc acaccacttt
     1021 gctcaatgcc gtcatcggca atgttggaaa gggtgttctg cacctcatct ttcaaggcaa
     1081 atttcagctc atcaaggttt tcgctctctt gcagtttctt gcctttatca tcaatcacac
     1141 ggaaagtcat ccgcaaatgt ggcggcagtt ggcttaaatc ccactgttca ggctcgacca
     1201 atacacccgt cattcggcgt agttcgtggc ttagattgtc cagcaacggt tttttaaacg
     1261 gctcggctcg ccctaaaaag gcgtccgcat aattcggcgc cggcacaaaa tttcgccgta
     1321 gcgatttcgg taaagattta atcagcgaga cgatcagctc gtggcgtagc cccggaattt
     1381 gccaatcgaa accttcgggt tccacttggt taagcagcgg tagcggaata tgcaccgtca
     1441 cgccatcgtg atcttttccg acctcaaact gatagctcag tttgagtttt aaatcgcctt
     1501 gatgccagaa attcgggaaa tccagctcgc tggcaaggtt ggcgttgtcg ttgatcagga
     1561 acgatttttc aaagttcagc agttcaggat cttttttgct tgcctgtttc caccaagtat
     1621 caaaatgctt gctcgacaca acttcggtgc caatccgctg atcgtaaaac tcaaacagca
     1681 cctgctcgtc caccaaaata tcacggcggc gggatttgtg ttccaatgcc tcaacttcac
     1741 ggatcaagcg gtgattttct ttgaaaaatt tgtaattgtt gtgacattcg ccttccacca
     1801 acgccgagcg gataaaaatc tcacggctga cggttgggtc tatcgagcca taattcaccg
     1861 agcgttgtgc cacaatcgga atgccgtaga gcgacacttt ttccgatgcc attaccgctc
     1921 cttttgactt cgcccagtgt ggttcgctgt aactggattt agtgaggtgt actgccaacg
     1981 gttccaccca ttccggctca atgcgagcga ccattcgtcc ccaaagtttg gtagtttcca
     2041 ccagctctgc ggccattacc catttcggct gttttttgaa aagtgccgag ttcgggaaaa
     2101 tgaaaaagtg ggcatttctt gctcctaaat agtgcatttt ttcattatct ttcaagccga
     2161 tatgcgacaa caagccggcg agcagggcgg tgtgaatcgg ctgataactt gccggctcac
     2221 tgttaatttt taagcccatt tctctaactg caaggcggag ttggtggtag atatcctgcc
     2281 actcccgcac acggttgtag ttcaaataat ccttacggca gagattacgg aactggtttt
     2341 tcgacagttc tttttgttgg gcttggataa agtgccacaa attcacaaag gctaagaaat
     2401 cgctctcttt atcggcaaaa cggcggtgtt tatcgtctgc cgactgctgt ttttcctgcg
     2461 gacgctcacg agggtcttgg attgagagag ctgacacaat catcatcact tcgtgcaacg
     2521 aaccgttttt cgccgcctcg atcaccattc tgcctaagcg aggatcgact ggcagttggg
     2581 cgagttggcg accgattggg gttaatctaa acccatcccc ccgtttacgg ggggaggttg
     2641 ggaggggggg agtgccatca ttagaacgga tttcccccct ccctagccct cccccgcaag
     2701 cggtggaggg gattttttca tttggaataa tcgcctgtaa ttcttccaac aaccgaatcc
     2761 cgtcctgaat ttgtcggctg tcaggggcat caacaaacgg gaaattggca atatcactca
     2821 atccaagcga agtcatttgt aaaataaccg ctgcaaggtt agttcgtaga atttcaggat
     2881 cggtaaattg tggacggctg ttgaaatcct cttctgaata gaggcggata cagatccctt
     2941 ccgaggttcg cccacaacgc cctttccgct ggttggcgga ggcttgcgaa atcggctcaa
     3001 tcggcaagcg ttgcactttg gtgcggtagc tataacgaga aatacgagcc gtgccggtgt
     3061 cgatcacata tttaatattc ggaatagtga gggaggtttc tgccacgttg gtcgccagaa
     3121 taattcggtt tagcccaccg cttggctgga aaatccgttg ttgttcggca gccgataagc
     3181 gggcgtaaag gggtaaaatt tcgctatgtc gcagttcctg cttttgcaag gcttcggcag
     3241 tgtcacgaat ttcccgttca ccgttcataa aaatcagaat atcgccacgc ccttcggctt
     3301 gcagttcgtc caccgcattt agaatacctt gcagttgatc ttgatcttcc actatcgggc
     3361 gataacgcac ttccaccggg aatgtccgac cagagacttc aataatcggg gcgttgttga
     3421 aatgtttgga aaaacgttct acatcaatag ttgccgaggt gatgatcact ttcagatcgg
     3481 ggcgtttgtg cagaatttgt ttcagataac ccaaaataaa atcgttgttc agcgaacgct
     3541 cgtgagcttc gtcaataatc agcgtatcgt actgatttaa atagctgtcg tgctggattt
     3601 ccgccagcag aataccgtcc gtcattagct tgattaagct gttttcactg acttgatcgt
     3661 taaagcggac tttgtaaccg accgtctcgc ccagttccga tttcagctct tcggcaatgc
     3721 gagtcgccac cgaacgtgcg gcaattcggc ggggctgggt atgcccaatc aagcccttca
     3781 ccccacgccc gagttctaag cacattttcg gtaactgggt ggttttgccc gaaccggttt
     3841 cccctgcgat caccaccacc tgattttcgc taatcagttt taaaatttcc tcacggcgag
     3901 cggaaacagg cagatcaggg tagtcaattt tcaggttttg ggcgtgctga gttcgtgcga
     3961 aaaaacgtgc ctgacaagcg gtgagatctt gcgaaatttc tgccaaaact gaccgcttgt
     4021 gatcgatgtt tttaatattt tccgcccctt ttaagcgacc gagcaggcgg cggaaatcgg
     4081 cggtggtgat attttccagc ttcacaagcg gtggtttctt atgatttttt tgcaaaggtg
     4141 tttccattta atttctcttt tgcattaaga ccttgtgatt tattgtaggg tgggcgtaag
     4201 cccacgtaac agaataggga ttttatgcgt ggacttacgt ccaccctaca ttaggtttta
     4261 ccaacaatca gtgacaaaat ccctgccgca atcaacggcc cgaccggtac gccttttaag
     4321 aacgccacgc cgatcaccgt gccgattaaa agcccagtta ccaacaccgg ctggctgccc
     4381 attaaattca cgcccctgcc acctagccac gctaccagca cgccagcaat tattgagagt
     4441 gccattttcc agttcaatag ttgggcaagt tcgggaagcg taattcgccc tgaaaccaag
     4501 gggctaagta cgccgatggt taaaatgata atcccgattt ttaagccgta ttgatcgaca
     4561 aaggggataa atttagaaag taaggtttgt tgcataatca gcaatacggc ggctgaaata
     4621 gtaaccgcac tgttttggct gatcagccct aaaataatca gcaccacaag tagaagtgcc
     4681 actgcgttaa attgtaaagt cataggatta aaacgtaaaa acccttactt catagaagta
     4741 agggagtggt taattaaacg ttgagctagt taataaattt cattattgcc attaaaaagc
     4801 caagaattgt gatatttaag gtaattgctt taaatatcgt ggtattgatt tcatttttta
     4861 gcttttcaag ttcaagttgc aaatcagctt ttgttgctag tgggctttga ctttgctcta
     4921 aggcttcatc gagagcatta gcaaatgcct cagccatttc aggtgtttga ttggcttctt
     4981 gcaagcgttt tacaaaacgt aatttgtcaa atcgtaggct catagctgca tccatttcaa
     5041 ttatcctctt gtggttaagt tataaactaa tttagcataa tcacaagcag gaattttagg
     5101 agattttgtg atcttcgtcg aaaatcgaca atttagtttg ccaccatcac cattgccggg
     5161 cgaatcactc gtccgtgaag cgtgtagcct ttttgtagca ctgtgctgac atggttggct
     5221 tcaattcctt cggcaggttg cattgaaata gcttcgtgca attcagggtt aaatgcctcg
     5281 cctacttcgc caattgccac cacaccaaat ttagccagtg tattgatgaa ttctttatga
     5341 gtcatttcaa cgccgtcaac taacgcttga gtggtttcat cggtcacggc tttatcaagg
     5401 gcatctaatc cacgttcaag gttatcaacc actgttaaca attctttgga gaatttttct
     5461 aaagcgaatt tgtgagcttt ttcaacatct tgctctgcac ggcggcggat attttgaatt
     5521 tctgcttgag ccctaagctg aatatcttgc tcacgtttgt cggcttctgc aatataggct
     5581 tctaactcgg caattcgagc ttgagcgaga gctaacggtt cttcttgagg tgtattttgt
     5641 tcttccgctt gagtttcttc agttacaact tcaggttgaa tttcttcttg ttttacttct
     5701 tcttgtaagt gttcattttg agtggtcatt ttttatcctt taaaagacta atctggaaat
     5761 gtaaatcttc cttaatatag cgataaatta agggatttca agcatatctc tttctttttg
     5821 cgaaaataat tcacttttta atcagaaaag gcttgcaaaa tacggggggg ggcttaaaat
     5881 gccctagtct tttccgccct taggcaaggc tatatttttt aatcactttt ctttaacgga
     5941 gaaaacttaa atgaaaaaat tagcgggttt atttgcagca ggtttagcaa cagttgcatt
     6001 aacagcgtgt aatgaagaaa aagcggcaga gccaaaagca actgcggctg aagcaaaacc
     6061 tcaagcaaca aatcaaacag ttcaccttta tacttggact gaatatgtgc ctgaaggttt
     6121 gttagatgaa tttacgaaag aaaccggcat taaagttgaa gtttcaagtc ttgaatctaa
     6181 cgaaacaatg tacgctaaat taaaattaca aggcaaagat ggcggttatg atgtaattgc
     6241 tccatcaaac tactttgtat ctaaaatggc gaaagaagga atgttagcgg aattagatca
     6301 cgcacaactt ccggttatta aagaattaaa ccaagattgg ttaaataaac cttacgatca
     6361 aggaaacaaa tattcattac ctcaattatt aggtgcgccg ggtattgcat ttaatacggc
     6421 agattacaaa ggtgaaacat tcacttcttg gggtgatttg tggaaacctg aatttgcagg
     6481 taaagtacaa ttattagatg atgctcgtga agtattcaac attgcgttat taaaattagg
     6541 taaaaaccca aatacaacta atccggatga aatcaaagaa gcctttgaag agttgaaaaa
     6601 attacgtcca aatgtgcttt catttacctc tgataacccg gcaaactcat ttattgctgg
     6661 tgaggtttct gtaggtcagt tatggaacgg ttctgtacgt attgcgaaga aagaaaacgc
     6721 accggttgat atggtattcc cgaaagaagg tcctgtgctt tgggtcgata ctttagccat
     6781 tccggcaaat gcgaaaaaca aagaaaatgc acataaatta atcaactact tattaagtgc
     6841 aaaagtagct gaaaaattaa cgttagcgat tggttaccca acttcaaacg tagaagcatt
     6901 aaaagtatta ccgaaagaaa ttactgaaga tacagcaatt tacccatctg cagaggtttt
     6961 acaaaaatct caatggcaag atgatgttgg tgatgcaatt gagctttacg aaaaatacta
     7021 ccaagagtta aaagcagcaa aataatagct gattaattct gaagcctcta gggagcaatc
     7081 tttagaggct ttctcttttg agttgcaaaa aatttggcaa aaacgaccgc tttctaaggt
     7141 acaatcataa aaacatactt agattttgag agattaaacc atgaacttaa gatggcaaga
     7201 atatcctgaa aatgcccgca aattatttaa actatcccta cccattttta tttctcagct
     7261 ttcagcttcc ggaatggggc tggcggatat tgtaatggct ggcttggtga gtgatgatga
     7321 tgtctcggcg attgcggtaa gtaattcgat ttactttccg ctctttctgt ttgtgtcagg
     7381 gttgctgaat gcaattaccc caaccgtttc ttacttaaac ggctcgagca atcgccattt
     7441 aattgctaac caagtaaggc agggctattg gattgtgttt gcaatgtcta ttccattaat
     7501 ggcaattttc ctaaacagcc atctgatttt agacttaatg caaacaccgg ctgagttttc
     7561 aatcaaatcg caacaatatt tagcagtaat ggcagttggg cttattcctg ctttgctggc
     7621 ggtgagttta cgttgtatga acgatggatt atctaaccct aaacctgcga tgcggattac
     7681 ctttttcggt ttattgctga acattccgct aaactatatt ttcattttcg gcaaatttgg
     7741 cttgcctgaa atgggagcgg taggctgtgg tgtagcaacc gcaattgtga acttgattat
     7801 gttttttatg ttgttgcatt attgctacac caattctgcc caaaaagata ttcgtttgtt
     7861 tgagaaatgg attgatgctc caagcggtca aattttgcta aaactttgca aattagggct
     7921 gccgattgcc tttgcgattt ttaccgaagt gatgctgttt tcgacctcat cgctgtttct
     7981 gtcaccactt ggttcacagg tggtggctag ccaccaagct gcattgcaaa ccagctcgct
     8041 attttttatg attccgatgt cgtttggcat tgcaaccacc attatgatcg gacaaacact
     8101 tgggcagaaa aatgtggagg gggcgaaaat cttaagttac cacgcactga ttaccgcaac
     8161 cgctttagct attattgccg ccatcattat tattttgttg aaaaatttta tcccttttgc
     8221 gtttaccaac aacccgattt cgattgcgat taccgctcat ttattgattt ttgcggcggt
     8281 ttatcaaata ccggatgcca ttcaagcggt agcaaacggc attctgcgtg gttataaaca
     8341 tacccaaccg attttatacg ttactctgtt ttgttattgg ggggtgagta tgccgctggg
     8401 ctacattttg gcaagaaccg attggattgt acaaccaatg gctgctcaag gtttttggtt
     8461 agtcttttgt atcggcttaa gtttggctgg tggcttgtta ttatggcaaa tgcgaaaaat
     8521 acaagcggtg ccaaaagcac aattaattgc aaaattagaa cggattaaat aacagattct
     8581 ctgctatgga acatagcagt gctttttact tttagaagat aactttgctg atgaaaaacc
     8641 taaatcctat ccaactacct ttgaataaat ccgttttaat cgaagcgtcg gcaggtacag
     8701 ggaaaacctt taccattgcc aacctgtatt tgcgtttatt gctcggcatt ggttgcaacc
     8761 cgttaacggt ggaacaaatt ttggtggtga catttaccaa agcagcaacc gaagagttga
     8821 aaaaccgtat ccgtaaaaat attcagcaat gtgccgactt tttaaaagat caagctgatg
     8881 gtttggaagt ggaaagtaca aaatcctatc gaaacaacct tgattttttg gcacagattt
     8941 atccgctcat tccgaatatt cacgaagcat tgttacgttt aagtattgcc gaacgggaaa
     9001 ttgataccgc cagcgtgttt accattcacg gcttttgtca aaaaatgctg gttcagtttg
     9061 cgtttgagtc gggcgtgcgg tttgacttgg atttacagcc aaaccaaagt gatctactta
     9121 aaaaattaag tgaagaagtc tggcgagagc aattctatcc gcaagattta gccatcactt
     9181 atgcggttgc cgaacaactt ggtacgccgg aatatgccct caatgcggta aggcgttatt
     9241 tatctactga attacctgaa ccaaatgcct ctttaaatca agatattgcc gagcatttgg
     9301 ctcaatatca gcagtttatt aatgaggtga aatcctattg gaaaacgcat tcagatgaac
     9361 tggttgaaac tatccgccac gatttaaagc ataaaattac gctgcacgga ggttggtatc
     9421 gagcgaccac ttttgaagcc ggtgtggaag tgatgaacca gtgggctaat tcgcaacata
     9481 accatttccc ggcagggctt tatttattca ctacagagaa aattgcggct ggcacgaaaa
     9541 agagctgtga gccgatagat tcccctcatc ttgcaaaaaa tcaggctttt ttgaccgctt
     9601 acaaggaacg ttttgaaaac agcttgtcag caatgttgca gtatcaattt ttaattgctc
     9661 tcaaagcaaa attggcagag tacaaacaat cgcacccaca acgcagtttt gatgatttac
     9721 tcacaatgct aaaccaagcg ttgaaaaatc tacacacggg cgaagccttg tctcagaaaa
     9781 ttcgggcgat gtatcctttt gcgatgatcg atgagttcca agataccgat ttaacccaat
     9841 atgaaatttt cagccaaatt tttatggcag agaatgcaga gaacggcttt attatgattg
     9901 gcgacccgaa acagtcgatc tataaattcc gtggggcgga tattttcacg tatttgcgag
     9961 cagcaaagca ggctgatgaa caattcacat tgggcaaaaa ctggcgttcg ttgcctgaag
    10021 tggtgcaagc ggtcaataat ttgttttctt ttgcaaatga taactctccg tttctttatg
    10081 aggatattgg ctttcaccca gtggaggctg atagccaaaa aggtcagtta gttagtgagc
    10141 aagggcattt tgtaggctac atcacggaaa acagtaaatt agatgatttg gctgaaatgt
    10201 gtgcttatca aattcatcaa cagcttgagg cgatggctca aggcaaattc ggagttgaaa
    10261 aaaacggcga atttcaatcc tttgctgcaa aagatattgc gattttagtc cgaaaaggtt
    10321 cacaagctaa gcgaatcaaa aaggcgttgg caaaacgtaa tatcaaatcc gtctatttag
    10381 ctgaatcagc ttctgtattt ggttcggaaa ttgcaacaga attgtgttgg ttattgcaag
    10441 ccgcactgaa tccgtatcat tacaaggcat tattatcggc gttaggctca accttgtggg
    10501 gcttaacggc ggcagagatc caccgctata aggaaaatga gcaactttgg gatctgaaag
    10561 tcaatcagtt tgtggaatac agcaacattt ggaaagagca gggcgttctg ccgatgttgc
    10621 ataaaatcta cttggagcag ggcattatcg aacgtttgaa aggtttggaa aatgcggatc
    10681 gcttgattac ggatttattg catttaaccg aaattttgca ggaaacctcg caagcgttag
    10741 agtctgaagc tgaactgttg cggtggtatg aaaagcaagt taattcgccc gattttaatg
    10801 acgagcaaca acttcggttg gaaagtgaag aggagctaat caaaattgtg acgattcacg
    10861 gctcgaaagg cttgcaatat ccaattgttt ggttaccttt tgtttcacaa aaaagtgagg
    10921 gagacacgca gacagcatta agtttatatc gcaattctca aggtgcgctg gattggtgtt
    10981 taggctcaga agaggcaagt ttttcgctac agtatgaggc ttatgcggaa gatttacgtt
    11041 tgctgtatgt ggcattaacc cgcgcggaat ctcagcttaa cttagtgttg ccgaaagaga
    11101 tttccggctg gtctccactc cattacttgt tagcagacgg ggaaatacct acaggaaaag
    11161 tgcctgtttc agattatttt agccaaaaac ggattgctgc taatttggtt gaagtagccg
    11221 gggaattacc tttctcactg tgggaaggag aacaatcttc agacgattac caagcaaaaa
    11281 cctttagtgg caatatccgt gtggttggtc aaattaccag ctttacttca ctttatgccc
    11341 aacacgagcg ttttagtgaa gggaaatcag aaagggtaat ggatttagcc caagatcgag
    11401 atgtacatat agaaaccatt gaggcaggtt attcaagtga aactgccgct ttctcgccat
    11461 tccaattccc acacggtatt aaagtgggca cggtgttaca tcactttttt gagcattgcc
    11521 aatttaacga acaaattgat agagaggctg ttgctaaagt atgcgagcaa ttagggctaa
    11581 gcgaggaatg gattgaacca acagcattat ggtttgagcg tattctaact acccctttgg
    11641 cagaggcaaa tttctgctta aaagcgattg atgaaaccaa acgattaaac gagtggcaat
    11701 tctatttacg cttaaaaaat gataaagcct tacatcaatt aaatgcgtta ttaaagcaac
    11761 atagcccttt agcaaaaact ttacctgaat tgcaattacc gcaattagaa ggttttgtgc
    11821 gaggctttgt agattgtatc gtgcaagtgg aggagaaatt ctacttaatt gattacaaat
    11881 cgaatttctt aggctatctg ccacaaaatt atgcgaaaga acacattcaa cgggaaatgg
    11941 gcagacaacg ctatgatttg caatatctgc tttacactct cgccttacac cgttatctaa
    12001 ctgcccgttt aggtgaaaaa tacgattatg aacgagactt cggcggagtg gcttacttgt
    12061 tcttaagggc aatgaacggc gaaaatgata acggcgttta ttttgacaag ccgactaagc
    12121 agttgattga agaaatggat cggttgtttg ggtaaatatg tgtaggggcg aaaatttttc
    12181 gcccctttat gggtaattaa ctcgcttgct cataccaaat cttattgata taaagcaaca
    12241 ctttaccaag cggagtttct accctaattt catcatcaac ctgtttgccg attaaggctc
    12301 gggcgacagg ggagtcaatc gaaatccagt tttttgctgg gtcgaactca tcgcaaccaa
    12361 caatacggta ctgttttgcc tcgccctctt cattttctaa ttccacccaa gcgccgaaaa
    12421 agactttgcc ttcttgttta gggtgataat caacaatttg tagcacctct agccgcttag
    12481 ataaaaaacg cacacggcgg tcgatttctc tcaaacggcg tttgccgtaa atatattcgg
    12541 cattttcgct tcgatcaccc aatgcggcag catcagacac cgcttgagtc actttcgggc
    12601 gttcttcccg ccatagaaat tttaattcct gatctaaggc ttgccagcct gaacgggtaa
    12661 tgtaatttga tttagccata gttatttaat tgtttatgga gcaaatagtg atttgcccct
    12721 acgaagtttc tattttgaaa gcaataaatt cgctactgtt cttattccca gtccggttgc
    12781 tcctgccgcc cataaatcgc tcgccgtttt gcggaatgtg gcagaggcgt caatatgtag
    12841 ccagttttgc tggtagtttt ctacaaagta agataaaaat gcggtggcgg tacttgcccc
    12901 agcccccacc ggcacagagc cgatattggc gatgtctgca aaggaagaag caatttgccc
    12961 acggtgaaat tcttcaaacg gtaaacgcca gaacggttca ttttccgttt tggcagactt
    13021 aaatagtgct tcggttaggt tgtcgtccat tgaaagcacc gagtggtagt cattgccgac
    13081 tgcgactttt gctgctcctg tgagggttgc agcatcaata ataaattgtg gattttgctt
    13141 gcacgcatca attaaaccat cggcaagcac taaacgccct tcagcatcgg tgtttaaaac
    13201 ttcaacagtt acgccattgc ggtaagtgat aatatcgcct aatttgaacg cattgtggct
    13261 gaccatattt tccgcacagc agaggtagag tttcactcgt ttattcaagc ctcgagcaat
    13321 ggcaaaagca agtgagccgg ttaaaagtgc cgctccgccc atatcggttc gcattgtgct
    13381 catactatcg cttggtttta gactataacc gccggtgtca aaggtaatgc ctttgccgac
    13441 caagcaagcc agtacctgtg cgttttcatc gttggttggg ttgaagtcta atactaagaa
    13501 tgcaggcgga ttggcagagc cttttccaac tgtccaaatg ccgtgatagc cttgttcttg
    13561 taatgcttcg ccacgaatga tctggtaaga aaccgtattc ggttttgcca ttttttggat
    13621 aaactcgacc gcttgttcgg ctaatttttc aggggttaat ttatctgatg gcttattaat
    13681 taattcacgc acgaaagtgg cacattttac acggttatca aattcggctt gctgttcgtc
    13741 taagtctggg tattgtaccg agccttgatt ttttaccgaa tgaaatcctt gatgaaacgc
    13801 ccagcaggat tctaaatccc aactatcgcc ggtcagctcc acggttgaaa taccttgatt
    13861 tttaattttg cgggcggctt tttgaatagt ggctaaatcg ttgttcggat tatgtacggt
    13921 aaaccccgca tcatttgcgg aaagaatagc atttttaccc caaatttcag gggcgttttg
    13981 agtagaaagt gaaattttca ttgctgtcat tatcggtttc cttagaaaat ggattttgct
    14041 ttatcctaac aaacttttgc aaagttttat acaaaaatga ccgcttgcag agcatagcct
    14101 tgacaagcgg tcattgtttc gtgtttttac aacctgatta aggacggatt atttgccgtc
    14161 ccaagcttta attgcattgt ggcggatttt aacacggctt tcagcattgc ctttgtagta
    14221 atctttatct aaaccgcctt cccagtcgcc atagttcggg ttcggtaaca taatgaattt
    14281 tttaccgaat tgttggctgt tttcggctac gaatgcacgg cgttccgcgt ttgatttacg
    14341 gtaagtcgca tcgccgaaat cgtttaagtt gtcgccaata tagagcacga tttcatagcc
    14401 ttgtttttcg atttcttcaa agcgaggggt tttgttcgat ttgtcttttt tcaacaagag
    14461 tgtttgttcg ctcacaccac taaagcctaa tttgttcata tcatcaatag taccggcttt
    14521 ttcactgctg tctttacggt ttgaaacata gaacatagtt cctttgtggc tattaacgta
    14581 gttgttaaat tccactgcac cggcaatcgc tccggtttgg cgggcattta cccaacgagt
    14641 ccagctttca ccatcaaacg gcttgtggtt tttaacctgc cagccggcat aaaggctgtt
    14701 gtccaccata gtttcatcta aatctactac cacggctttt ttcttgcctt ttttcacttt
    14761 ggcttggtcg aatgccactt tcgctgcatt gaatgcttga tgggcaagag cttggtattc
    14821 gccggattgt tgcatccagt ttatccctaa tgtagcttgc tcttgcaaca ccatttgatg
    14881 atgctcatcg ctgtttttat gcgtgtgcga acaagcagtt aatacaaata aagctgtgag
    14941 gctcatagca gaaagtttga tgtttttcat acgtatatcc ttagttttat tgttgataaa
    15001 cagagcgatt atacctaaaa agagttgctt atggctaata gtttattgct cctattcact
    15061 tttaaagcaa actaaggtag cctagtaacc tttttataac aattacacag aggctatatg
    15121 caaacattat taaaatttac acaatttatc agcaaaacct tcgccatttg ggtggtgttt
    15181 tttgctttta tcgcagcaca atttccggaa acctttaagc aattcctgcc ttggattcct
    15241 tatctgttag ggattgtgat gttgggaatg gggttaacct taactttcaa agattttgcc
    15301 gaggtaacga aaaatccgaa atcagtgatt atcggcgtga tcgctcaatt cgtggtatgc
    15361 cgagtgtagc ttatggattg gcaaaagcat ttaacttacc cgcagattta gccattggtg
    15421 tgattttagt tggttgttgc ccgggcggta cttcttcaaa cgtgatgacc tatttggctc
    15481 gtggcaacac agcgttatcg gtagcttgta ccactatttc aactttactt gccccagtgc
    15541 tcacgccggc aattttctat ttatttgcca gccaatggtt agaaattaat gcaacggcaa
    15601 tgtttatttc ggtgttgcaa atggtgctat tgccaatttt tgtgggcgtg gtgattcgta
    15661 ctattttcaa acaaaaagta gagcaattta gccaaacaat gccattaatt tcagtgattg
    15721 caatcgtatt aattgtcacg gcggtggtgt cagttagccg agatcgtatt attgaatccg
    15781 gtttattaat ttttgcggta gtagcattac acaacggttt aggttattta atcggttatt
    15841 tggcgagccg tttattaaaa ttaccgattg cagacagcaa agcggtggcg attgaagtgg
    15901 ggatgcaaaa ctcaggattg ggggcagcac ttgccgcatt acactttaaa gccaacccta
    15961 tcattgcggt gccaagtgcg gtatttagct tctggcacaa tatttcaggc ccgattttgg
    16021 cgatgatttt cgctaaaatg aaaaacgata acgaaaaata aaattcgttt taatacagac
    16081 gttttaatgt tttaataaag aatagacaaa cggttaaatt tttctaattt tttgcaaaat
    16141 gttcagaaaa tttaaccgct tgttgtttag aatttagaac attcttggtc cacgtgcagt
    16201 gctgattttt tcatcatccg ctctttgggt aacaatcact tgatcaccct catttaagcc
    16261 tgctaatact tcggtatttt gcgtatccga aatgccaatt tggatttttc tttcaaccga
    16321 ctgctcattt tccagcacca acacataatt ctctttacca cgttttttga ttacgctggt
    16381 gggtacaact aaaacctgtt cccgtttatc aatagtaatt tgggcttgag tagtcattcc
    16441 gatgcgtaaa ctgttatcgg cattatcaac ggaaacatta gcgtagtaat aaaccgcttc
    16501 ggtattaccc gattgttcgg tgtagttatt atcggtcagc gtggtgagtg ccggatcaac
    16561 tgaatcaatg gtagcactat attctcgatt tggctcagca agggtggaaa acttaacttt
    16621 ttgcccgact ttaacctgtg caatatcgcc ctccgaaatt tcaagtttaa tcagcatctt
    16681 agataaatct gctacctgta caatagttgg cgaagtttga ttggaattga ccgtttgccc
    16741 gacagaaacc ggtacagaca caatcacgcc gtccattggc gagataattt gcgtataagt
    16801 taagttggtt ttagcatcgt ttaccgaaat ttcagccgat tttaattgtg ctttaatgtt
    16861 atccaccgtg gctttggctg aagctaaggt atttttagcc gtttcaagat cgtttaaaga
    16921 ggcactattt gcccgataga gtttatttaa gcggttgtag ttcgattgag ctacttcaag
    16981 tgcaacctgt gcagaggtga gctgtgcttt ataagaagaa agccgggctt gagcggtgct
    17041 taaggtgttg ctctggttgc tggaatcaat atctgcaatt aaatctcctt gcttcaccga
    17101 ttgcccgagc tcgacataga gtttttggat tttgcccgaa acttgagccc ccacttcggt
    17161 gcgtttattc gctcgaaccg aaccggttgc cagcacattt ttgttaattt ctgcccgtgt
    17221 gacagcttgg gtaatgtaat ggatttgcgg tttattggtt tgttgctgat aataaaaata
    17281 gccgcctatt ccgagagcgg caattagcac aagagtggct aatgttttac gtttcatact
    17341 gttccttgat gatatacaag cggtcaaatt tagacaaaaa tttgcaaaaa agttgctctc
    17401 aactaaacaa tgccaaatgt ggctcgaaga tagcttgcca ccgcttcatc tttgttaaag
    17461 ccaatcactt cattattcgg taatacggct tttaaacgtg gatcggcatt acccattaaa
    17521 caacctttgc cggctaaact tagcatttcc acatcattca taccgtcacc aaaagcgata
    17581 caatcggcta aggtgtagcc ccgtaatttg accaattcgg cgagagcatt ggctttacac
    17641 actccttttg ccatcacttc aaggcaaagt agggcagagt aggtcatttg cacacggtcg
    17701 ccataggtat cccgaatata atgttcaatc ggtactaaag cttcagcagt tttgccgata
    17761 aaaaacactt tctcggtatt tcgaccgtga tgatgagcaa aatttactac ttgatagcta
    17821 aatcctgaat cttgatggaa tttttttaac tctgcaatct ctttattgat aaaccattca
    17881 tcgccttgat agctgtttaa gcacacattt tggtcgtcaa attcaatgtt cattaattca
    17941 aaggcaagat cttccggtaa ataatggttg agaatttttt taccctctaa attgttggct
    18001 cttgccccgt ttgaagtgac taacattgca tttttaacgt ttactttccc aataatctga
    18061 gacacatctg gatgattgcg accggtggcg aaaaaaatat caacaccttt ttttgatagt
    18121 tgttctaatg tatcaatagt gaaatcacca attttatgat tggcatttaa tagtgtgcca
    18181 tcaagatcgg aaataattgc acgaaatggg a
//
LOCUS       DANLXK010000042        17988 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.042, whole genome shotgun sequence.
ACCESSION   DANLXK010000042 DANLXK010000000
VERSION     DANLXK010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17988
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            81..1172
                     /gene="ulaG"
                     /locus_tag="PXD88_001185"
     CDS             81..1172
                     /gene="ulaG"
                     /locus_tag="PXD88_001185"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL6280769.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1256..2002
                     /gene="ulaR"
                     /locus_tag="PXD88_001186"
     CDS             1256..2002
                     /gene="ulaR"
                     /locus_tag="PXD88_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL6280770.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2057..2917
                     /locus_tag="PXD88_001187"
     CDS             2057..2917
                     /locus_tag="PXD88_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL6280771.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2914..3633
                     /locus_tag="PXD88_001188"
     CDS             2914..3633
                     /locus_tag="PXD88_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL6280772.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3881..6331
                     /locus_tag="PXD88_001189"
     CDS             3881..6331
                     /locus_tag="PXD88_001189"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL6280773.1"
                     /translation="MKNRNYFVAIATILALSPEVNATELSDQLASRTRYYPSATDSYY
                     SYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTKVYTTHNGRT
                     TVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIVDNKPITDTQ
                     PNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWNDRSRGYNIDD
                     PNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTAPASATHGIE
                     VAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRGARIFNQSYG
                     IPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRGDLDPSLQAG
                     LPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVTAMGDYIFNL
                     GGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGAPGVDDVYGW
                     GLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKNGQGELILSG
                     ASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEGTVVNQGYST
                     IKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQKGLSMSAIT
                     SDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSALDNQIEGNN
                     GSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFENSETVNKDLS
                     NRLVMLGTLDNVGETAGV"
     gene            6341..7156
                     /locus_tag="PXD88_001190"
     CDS             6341..7156
                     /locus_tag="PXD88_001190"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL6280774.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALAEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
     gene            complement(7243..8103)
                     /gene="pdxY"
                     /locus_tag="PXD88_001191"
     CDS             complement(7243..8103)
                     /gene="pdxY"
                     /locus_tag="PXD88_001191"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL6280775.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            8222..8297
                     /locus_tag="PXD88_001192"
     tRNA            8222..8297
                     /locus_tag="PXD88_001192"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8255..8257,aa:Thr,seq:tgt)
     gene            complement(8392..9345)
                     /gene="accA"
                     /locus_tag="PXD88_001193"
     CDS             complement(8392..9345)
                     /gene="accA"
                     /locus_tag="PXD88_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL6280776.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(9399..10823)
                     /locus_tag="PXD88_001194"
     CDS             complement(9399..10823)
                     /locus_tag="PXD88_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL6280777.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(10825..11559)
                     /locus_tag="PXD88_001195"
     CDS             complement(10825..11559)
                     /locus_tag="PXD88_001195"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL6280778.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            11706..12203
                     /gene="tpx"
                     /locus_tag="PXD88_001196"
     CDS             11706..12203
                     /gene="tpx"
                     /locus_tag="PXD88_001196"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL6280779.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(12288..13913)
                     /gene="yidC"
                     /locus_tag="PXD88_001197"
     CDS             complement(12288..13913)
                     /gene="yidC"
                     /locus_tag="PXD88_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL6280780.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(14066..14491)
                     /locus_tag="PXD88_001198"
     CDS             complement(14066..14491)
                     /locus_tag="PXD88_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL6280781.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(14820..17912)
                     /locus_tag="PXD88_001199"
     CDS             complement(14820..17912)
                     /locus_tag="PXD88_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL6280782.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         5123 a         3638 c         3936 g         5291 t
ORIGIN      
        1 aagatgtaca aatttttgtg attgtttatg attggttttg attgcattgt tcttatttta
       61 gcgtaaatca ggagactatt atgagcaaaa ttcaagaaat cactcgtgaa agctggatcc
      121 tttcaacttt ccctgaatgg ggtacttggt tgaatgaaga aattgaagaa gaagttgtac
      181 cggaaggcaa ttttgcaatg tggtggctag gctgtgtcgg tgtgtggatt aaaaccccag
      241 ctggtgcgaa tatctgtatg gatttatggt gcggtcgtgg taaatccacc aagaaagtaa
      301 aagatatggt gcgtggtcat caaatggcaa atatggcagg ggtgcgtaag ctccagccta
      361 atttgcgggc tcaaccgatg gtgttagatc cgtttgcgat taacgaagtg gacttcattc
      421 tcgcttctca ctatcactca gaccatattg atgtaaacgt ggcagcggct atttgcaata
      481 acccgaaatt agaccacgtt aaatttgtcg gcccttggca ctgtgcagaa ttatggaaaa
      541 aatggggcgt gccggaagaa cgtattattg tggtaaaacc gggcgatgtc gtgaaattaa
      601 aagatgtaga aattcacgcc ctagattcat ttgaccgtac ctgtttagtg accttaccgg
      661 tagaaggtgc agaagaacgt ggcggagaac ttgcaggctt atgcccatca gatgaagaaa
      721 tgggacgcaa agcggtgaac tatgtgttca aaaccccggg cggtacgatt tatcacggtg
      781 cagattctca ctactcaatc caattcgcta aacacggtaa gcaatttgat attgacgtag
      841 cgctgaataa ctatggcgaa aacccggttg gtattgcgga taaaatgact tcagttgatt
      901 tattacgtat ggcggagtgt ttacgctgta aagtgattat tccggttcac catgatattt
      961 ggacaaactt tatggcaagt acgcaagaaa ttattgattt atggcgtatg cgtaaagatc
     1021 gcttacaata ccaattccac ccatttattt gggaagtggg cggcaaatat gtttacccac
     1081 gtgataaaga cttaattgaa tatcatcacc ctcgcggctt tgatgactgc ttcgagcaag
     1141 agccaaatat tcaatttaaa tccatgctat aggtgagcag tcgccactct cactggagag
     1201 tggcgtttta gcaagttcat tatggagcag tagtgattag taatgggata aagtagtgaa
     1261 cgaaagttat agacacaaag agttattagc cctgttggaa gagcggaaag cactgtcaac
     1321 agcagatatt atgcagctgt taaatatttc tccggcaaca gcaagacgtg atatcagtaa
     1381 attagatggt caaggtaaat taaaaaaggt tagaaacgga gcagaagcaa ttctggctcc
     1441 tacattttta cagcacacaa aaataactaa caatgcgcag gagaaacgta gaatagcgga
     1501 agctgccggt cgtttatgta aagatgggga aagtcttatt ctgacgtgtg gttccacaat
     1561 ggaaatgctc ggtgaagtat tatgtggtag aaaattgcaa attattacca attatctacc
     1621 gcttgcaaac cagttgattg caggttgcca cgatgatgta gtgattatgg gtgggcaata
     1681 taataaacat aaaaaagtga tgctctcaat taacacccaa aatgagatga cttatgccgc
     1741 taccacaatg tttaccagtg gcaaaggctt aaccagcgaa ggattattta aaaccgatat
     1801 gattattgcc aatgccgagc aacaaatggc aaagcacgca gaacgttatg tggtgttatt
     1861 ggatagcacc aagctcggca aaaaagtcgg tatgctgttt aaagagttcg ataaaattga
     1921 tttattgatt accggcaaag aggcggatcc gactattatc caagcattaa gaaacaaagg
     1981 cctggatatt atcttggctt agcctgtagc ggtcaaattt aatcaaaatt ttacttatca
     2041 tcttcaaggg aaaactatga gaaaacataa actgggtatt tacgaaaagg ccttgccgaa
     2101 aaacatttcg tggcaagacc gcctttctat cgccaaagtc tgcggttttg actttgtgga
     2161 aatgtcgatt gacgaaacgg acgaacgctt agcccgcctt gattggagca aaaaagaacg
     2221 tgccaagctg gtgaaaacca tcatcaacac cggcgtgacc attccgtcaa tgtgcttgtc
     2281 cggtcatcgc cgtttcccgt ttggttcttg tgatgaagcg acccgccaaa aagcctatga
     2341 aattatggaa aaagccattc aactggcggt cgatctcggt attcgcacca ttcagcttgc
     2401 cggctatgac gtctattacg aagagcagga cgaaggcaca atccaacgct tccaacaagg
     2461 cttagaatgg gcggtggagc tggcggcaag caaccaagtt accattgcgg tggaaattat
     2521 ggacacccaa tttatgagtt cgatttcccg ctggaaaaaa tgggacgaga tcatcaaatc
     2581 accgtggttc accgtgtatc cagatttagg caacctctca gcgtggaacg acaacgtagc
     2641 ggaagagctg aaactcggca tcgacaaaat ctctgccatt cacttaaaag acacttacaa
     2701 agtgactgaa acctgcaaag ggcagttccg tgatgtgcca tttggtgacg gttgcgtaga
     2761 tttcgccgct tgttttaaaa cccttgccga gctgaattac cgtggcgcat tcttaattga
     2821 aatgtggacg gaaaaagccg aagagccgat tactgaaatc atcaacgccc gccgttggat
     2881 cgaacaaaaa atgcaagaag gaggatttac cctatgacgc aattaactga attaacccct
     2941 gcattacaag ccttaagaga gcgtgtgtta aaagccaatt tagaattacc gaagtatggc
     3001 ttggtaactt tcacttgggg taacgtaagt gaaatcgacc gtgagaccgg tttagtcgcc
     3061 atcaaacctt ccggcgtaga atacgatgcg atgacggtgg aagacattgt attggttgat
     3121 ttacaaggta atcgagttta cggagataaa aaaccgtctt ctgatacaga aacgcactta
     3181 gaactttatc gccaattcac tgatattggc ggtgtggtac acactcactc tcgcaatgct
     3241 gtaggttggg cacaagcagg gcgtgattta ttggcacttg gcaccactca aggcgattat
     3301 ttctacggtg cgattccttg tactcgcaaa atgaccgcag aggaaattgc cggcagttat
     3361 gagctggaaa ccggaaaggt gattgtcgaa actttccgaa ctcgaggtat tgaaccgaaa
     3421 gcagttccag gtgtgttggt acattcacac ggtccattta cctggggaaa agatggacac
     3481 gatgctgtgc ataattctgt ggtattagaa gaggtggctt acatgaattt tattagccat
     3541 caaattcgcc cacaaattgg cccaatgcaa caggaattat tagataagca ttatctgcgt
     3601 aagcatggtg caaatgctta ttatgggcaa tagctaataa cctaaaaatt attttccaaa
     3661 ttatcaacag ctttcgaggg gctttctata atcggaatag ctcctcagtc tgtttgagtt
     3721 tatggataga tccacaaata attaccattt tccttttctt gattttaatt ttgatttttg
     3781 ttctaatctc tgcctcttgt ttttacaagt ctattaagga tccgtagtag atttgaaata
     3841 aacaagagta tctttgtatt tattagaagg aaaccaaaag gtgaaaaata gaaattattt
     3901 tgttgcaata gcaacaatat tagccttatc gccagaggtt aacgcaactg aactttcaga
     3961 tcagcttgca agtagaacaa gatattatcc ttccgccacg gatagttatt atagttacta
     4021 taaatatgca ccgatttatt cgggctacta tacatcgaat agccgtaatg gttattcgtc
     4081 gtggtattat ccaggtagca atgcaggtgt aacaaccaga actgtttcga caacagttaa
     4141 tggcattaca gttacaaaag tttatacaac gcataatggg agaacaaccg ttcgtaccac
     4201 ttatgctcct gctgtgaaca aaccaattgt aaataaaccg acaccgattg ccaataaacc
     4261 cgttgtagat acgccaactc aaccggttat tgatgccaac ccaattatgg atccgccagt
     4321 ccaaccaata gttgataata aacccatcac tgatacacag cctaatccaa ttacagataa
     4381 caaacctgtc attgaatcgc caattgatga cacccgtcca gttatcatta ggcctacaac
     4441 accggtaaat cttcatcctg aacctgtagc tgttggtgta cccaatgtag gtattcgatg
     4501 gaatgaccgc tctcgtggtt acaacattga tgatcctaat aacaaacaaa atgttaagtt
     4561 aactggtgaa ggtgttaaag tcggtatctt agatagtggt tttaaaaact atttaatgca
     4621 ggacgatata ctcaaaaaat ttggtaatcg cgctgttatt attgaaacag ggcgtactgc
     4681 cccggcttct gcaacacatg gtattgaggt cgcagaaatg gttgggggag ggaactctcg
     4741 caatggagta gcgtctaagt caacgttatt acttgcggat attaccaaaa caacaaatgc
     4801 gggtacagga ttatccgcaa cagctccaat ttattatgac ttatggaata ggggagcccg
     4861 tatttttaac caatcatacg gtattccaaa gcctcttact tattttaata acaatagaaa
     4921 ttctagctat tactatttac accaatttga tggtaatgtg ttgcaattct ataaggataa
     4981 agtaaaagag gggggcttat ttgtctgggc tgcggggaat aaccgtggtg atcttgatcc
     5041 atcactccaa gctgggttac ctcattatga agctgacttg gaaaaaggtt ggatttctgt
     5101 tgttgcggta gcaaccagaa ctaatcaggg attgggtaac tttgaatgga gcaatttatt
     5161 gccatattct caagccggtg tggcaaaaaa ttggaccgtt accgcaatgg gtgactacat
     5221 ctttaattta ggaggtagaa acattattgc tagtggttca tcctttgcag ctccagccgt
     5281 tacgggtaca gcagctctcg tgaaacaaaa atatccttgg atggatggta accttatcaa
     5341 acaatctatt ctctcgacgg caaccgatat cggcgctcct ggagttgatg atgtatatgg
     5401 atggggttta cttaatattg aaaaagccac taatggccct gcgcgttttg gtaaacgact
     5461 cgctttagcc gataacgtga ctgtaaatat tccaaatgga agctatgagt tttccaataa
     5521 tattaacggt gatgcaggct tggtgaaaaa tggccaaggc gaattaattt tatcgggtgc
     5581 tagtactttt gaaggggata caacactcaa tgaaggtgct gtcactatta acggtaaaaa
     5641 atatgtgtct aaagtaaacg tatctccaag tggtacattg gttgtcaata ataccacgtt
     5701 agaaaatggc gtaaataacg agggtacagt tgtcaaccag ggttattcta cgattaagag
     5761 agcttacgtt gcttcagcac aaagtacgct agtgtcagat ttaggttcaa acttaaatgt
     5821 aaaaggagaa gttgacttaa acggctctac tttatcacta gctgcggtaa aagagggtaa
     5881 agctcagtat gtgacccaaa aaggtttatc aatgagtgct attacttctg attccgcaat
     5941 taagggtaac tttgctgcaa tagaaacctc agggttatta actgcgacgg cggaaaaaac
     6001 caatgagaat gaagtaaaag caacagttag ccggaaaaat gtcgcgactg ctttagagag
     6061 ctcattttcg gcattggata accaaattga aggaaataat ggttctacaa atgctacaaa
     6121 tgatgaattc gcacaacaag cggctacttt acaaaacagt attgcaaaca tcaatacgca
     6181 aagtgtggtt ttagatagct tatctggtca aatttatgcg tctgcgcaag cgcttacttt
     6241 tgaaaactca gaaacagtga ataaagatct ctctaaccgt cttgtaatgt taggaacgct
     6301 ggataatgta ggtgagactg ctggtgtgtg agtaacgggt atttatggga atggtactct
     6361 aaaagaaata gggtttggtg aaggtaaaac caatacctat gctggccaaa taggttttga
     6421 taagccagtt acagaccatg tgattttagg tgcggcactt aattattcta aagcaaaagt
     6481 gaacttcgat cgttatggcg gtagttcaaa agcagatgga ataggtgcat cattatatgc
     6541 ccgtataggc aataagcata aaacaccttg gtatttacaa ggtcgagccg gttatggcag
     6601 tgttgattca gatgtagagc gtcatattat tttggcggat aataacgcaa gtacagcaaa
     6661 aatcaaccac cgagacagag tattttctgc ttatgttgaa tcaggctatg acttcaagca
     6721 aggtcgcttt gcgttaactc catttgtcgg ttttagtcat gatgttgtca gacgtggcgc
     6781 attcagtgag caaaacagtc aatttggtct caccgcggac aaagcaacct ataaacaaac
     6841 aagcggattg attggtttac gaacatcttt agaggtgaat ttagctggga tgaaaacgac
     6901 tttccaaggc tatgtaaatc atcaaaaagc gtttaatcga gaagatctta gctttaaagc
     6961 aagttataca ggtttacaag atgcaaaatt cgacgtaaaa ggtattgggc ttgcaaaaca
     7021 taaaacgtgg gtagggattg gtgcattggc ggaagtaaat aaaaatactt ccttatatgt
     7081 gaattacgac cttaaactcg caaaaaatag tggtcacaac aacgttgtga ctgctgggat
     7141 tagaattaat ttctaactga atctttttaa acaaaacggg cgtttatacg cccgtttttt
     7201 tatagttata gagataataa tgttatttta tacttcattt aattaggcaa tctttacagc
     7261 ttggtaacta cactgtggat taacaatccg atcacgagaa gcaataattt gtaactcata
     7321 aagccctgat ctagcggttt gttccattac ctcattgacc gcatttgcag tgtgttcaaa
     7381 ggcttctaga tcggattttc catttaataa gttcgccaca aatagccctg cggttaaatc
     7441 gcctacaccg acaggttctt tggcaaattg gtagagtggg cggctgatgt gccaaatgcc
     7501 atcttggttg gcgaacagca tttcaaattt gttgctctct ttgccgactc ggcttaaatg
     7561 tttaaccaat acttttttcg ggcctttggt taaaatcact ttcactgcct cgaccgcttg
     7621 ctcaaaattt tccaccgtta aaccggttaa ttctcttaat tccactaaat ttggtgtgat
     7681 aatgtcggct tgtgccattg ccagattgat caatccctct tttacgccgt ctgccacaat
     7741 gcagcctttg tcggggtgtc ccattaccgg gtcgcataca taaattgcgt ttggattttc
     7801 cgctttcact ttatgaaaag cctgaataat ttcggctact tgttctgccg agccgatata
     7861 gccagagagt acggcatcgc aacgatgcag ttcaccgata ttgtgaatgc catcaacaat
     7921 gctaccgatt tgttcttttg gcatcaccat accgccccat tttccatatt gggtatggtt
     7981 ggaaaactgt acggtattta acgcccatac atcaacacct aacagctgca taggaaaagt
     8041 tgaagcctta ttgccggcat agccgtagac aacgtgcgat tgtatggata gtatgttttt
     8101 cattcattca ctcctttaaa atttcaatat gtgttgtttt ttagtcattt gaagttgcaa
     8161 ggacttgaag ctcatcaaga aatctctata atcccgcctc gttctcttat ccattcaata
     8221 tgccgactta gctcagtagg tagagcaact gacttgtaat cagtaggtca ccagttcgat
     8281 tccggtagtc ggcaccatca cctttatttt ctgatgagtc ccctttaatg taaaatggca
     8341 agattttgca aattttcaca aaaatcttac cgcttgtagg gtgaaattga attagacgta
     8401 accgtaattc attaagcgtt gataacggcg ttccagtaaa tcctctttat taagttgatc
     8461 taaccctgcc aaatcttcaa caatacgctg tttaaggttt tgggcgattt gttcaacatt
     8521 gcgatgagca ccgcctaagg gttccggcac gatgttatca atcagctcaa gctcttttaa
     8581 acgaggggca gttaaaccca ttacttctgc tgccgttgag gctttatcgg cacttttcca
     8641 cagaatcgag gcacagcctt caggtgaaat taccgagtaa gttgaatatt gcaacatatt
     8701 gaccttatcg cccacaccga tcgctaatgc accgcccgag ccaccttcgc caattaccgt
     8761 acagattact ggcacggaaa gttgagacat ttcacgcagg ttacgggcaa tcgcttctga
     8821 ctgaccacgc tcttccgcac caatgcccgg ataagctccc ggtgtgtcga taaaggtgat
     8881 gattggcata ttaaagcgtt ctgccatttc cattaaacgt aacgctttgc gatagccttc
     8941 aggagcaggc ataccaaagt tacgtttcac tttctctttt acggtacgac ctttctgatg
     9001 accgataacc atcaccggac gtccgtccag acgggcaata ccaccgacaa tcgctttatc
     9061 atcggcaaag gcacggtcgc ctgccagttc gtcaaattcg gtgaaaatat gctcaatata
     9121 atctaaagtg tacgggcgat tggggtggcg tgccatacgg gaaatttgcc acgcatctaa
     9181 attagcaaag gttttcttgg ttaattcctc gcttttcttt tgtaaacgct tgatttcatc
     9241 atcaagatta attttgtcat cttgctcgct gactgctctt aaagactcga tcttggcttc
     9301 caattcagca atcggcaatt caaaatctaa aaattcttgg ctcattctat tttccttttt
     9361 atgggcaaaa ttatggggca ttatcgctta tcagtcggtt attgtccatt ttcaattacg
     9421 ctaaattgac ccatcgtacc tctatcacgc agcataaaat cgctcacgcc aaaggtaaat
     9481 ggcagttgct caggggcagt attatcaaag cgaaccaaca gcgtgatttc ttgctccgcc
     9541 tcgagccaaa cggtgtcccg ccacgcaagt tgtttgatag ggtattgctt gcggtttagg
     9601 gtttcaataa tgaattttgc accttgtagc gtaaatccga ccgcttgtgt gctatgtaaa
     9661 taccaacgct caacgctgcc tttttgcgcg gtaaaatcaa tgcgttttgg gtcaaaccgc
     9721 ttttggttga ttaaataatc agccggacga atggcaaaac gtctctcttg gctgattttc
     9781 aggttaaatt cctctaagtt gaaagccggt aaactcggtt tattattcaa taccgctgcc
     9841 attccttcag ggcgaagctc taaaatcacg ttatcattca attcgtcgtt gtcagcaaag
     9901 acctgcccga ttttgtaaaa aatatctctt ttttgaccgc ttatcagcga taccgctttc
     9961 ccttcgctta aatcgaccaa cacttccacc ctttcactcg gtgcaagttg aaccgattcg
    10021 gtttcaagtg gctctgccag cattcctaag ccggtggcga ttaggtacaa cggctgctcg
    10081 ttatctaagc gtaattcata agcacgggaa agtgaggcat tgacgatccg caatctgacc
    10141 cagccacgag gcacgttaaa ataaggcgat tcctgcccgt tgacaaataa tcgcttaccg
    10201 aaaaattgtg aggtgttttt atctaacacc tgtacgccgt ctttgttgag cagctggtct
    10261 tgcagaatta acggaatgtc gttcacgcca tatttattcg gtaaagtggc ttttttgctc
    10321 tgttcatctt caatcatcca caagccggct aagccacgat acacttggaa tgccgagttg
    10381 agcattgtat cggcgtgata ccaacaagta caagccggtt gattgataga aacaatcggc
    10441 gaccagctac ttttggggtc aagggaacga tgcaccgtgc caatcatctc acttgaggct
    10501 tgcaatcctt gaatattcat tgagattttt tgcggtaaat tattgagata agttaatttg
    10561 acaaaatccc ccgattttac ccgtacggtt ggggcaagat attgcccgtt cacaccccat
    10621 acatcaacca atttgccttt atcaaattgg gtttgtgcgg ggcgtaaatc caaccgaacc
    10681 ggctttcctc gcccaatatc cattaaaggc ggaatgttca gttgcggtcg ctctgctgct
    10741 aatagcggtg ttggcactgt tgcaaatcca gccgcaaggg cagagccttg taaaaattgg
    10801 cgtcgggtga tctgtttttt catattaggc gttttttgca gtgttttcta actgttcgac
    10861 ttcttgatta agttgttcaa attttgccaa cataatttga tggcactttt ccatcagttc
    10921 tttgacgttt tcacgggaat agcctgaagt atcaatcgga tcaagcattt cacagattac
    10981 tgtgccgtta tttgaacggt tcaaatccac tttattgtgt aaattagagc aaactaccgg
    11041 cacaatcggc acgccggcag aaatggctaa atggaatgca ccggttttaa atggcagtaa
    11101 accacgccca cggctacgag taccttccgg gaacatccac accgacacat tgcgttcttt
    11161 cacgatttgc cctgctttat tcattgtttc aatcgcactg gaacgctttt cacggtgaat
    11221 aaaaatattg ccggttgccc agtaaaccaa accgaaaaac ggaatccaaa tcaggctttt
    11281 tttgccgata ctcaccgtct tttctgccac cattgaggaa atcgttacca tatcgtaatt
    11341 gttttgatga ttgccgatat agacaaccgg atagttaatt tccggctttt tgcgggtaat
    11401 taattccaac ccgactaatt tatgcaaagc accaaaccaa cgagctacca cacccacgct
    11461 acttgggtga cgtaaacgca gtaacgcata aatagtgcca aaaatagaaa tgaaaatagc
    11521 ggcaagggca acaattaaaa tacgaaaaat ttttaacata atggaataac cttaaaaata
    11581 aattgtctag gagtatagca aaataaggtt attttctaaa ggctatccac attaaattga
    11641 tagtttccta ttttgcaaaa aatcggtata tttaaaccgc ttgtttattt gataaggaga
    11701 aaaaaatgag taaagtgact ttagcaggaa gcccgattga tgttgcaggc acatttccac
    11761 aaaaaggcga tgtggttgcc gattttacct tagtcaacag tgatttaagt gatgtttcgc
    11821 tttccgattt tgatggcaaa cgcaaagtgt taaatatttt cccaagtatt gacaccggca
    11881 tttgtgccac ttctgtgcgt gtgtttaatc aaaaagcggc tgatgtagcg aatacggttg
    11941 tcctttgtat ttcagcggat ttaccttttg cccaagcacg tttctgtgga gcagaaggaa
    12001 ttgaaaatgc caaagtatta tccagtttcc gtcatcgtga tttacacaac aaactggggg
    12061 tagatattat ttcaggtccg ttggcaggct taacttcacg ttcagtaatt gtgttagatg
    12121 aaaacaacaa ggtattacac agcgaattag tgccggaaat taaacaagag ccggattatg
    12181 aggcggcgtt agcggtatta taatttgcag aattatgctg gaaaataacc gcttgtaaag
    12241 caacaaaaag cccgttgatt caattcaacg ggctttgttt ttagtgatta tttcttacga
    12301 gagtgtaagc cttttttctc aaggttacgg taaatcaacc attgctgtgc aatcgtgatt
    12361 aagtttgagg ttaaccagta aagcactaag cctgatggga accataagaa gaacacggta
    12421 aagataaccg gcataaaggt cattactttt tgttgtaccg ggtcagctac cggtgttggc
    12481 gacatttttt gtaacaagaa catcgaacca cccattaata aaggcaaaat gtagtatggg
    12541 tcttgtgccg ataagtcttg aatccagccg aagaaaggtg cgtggcgtaa ttctaccgct
    12601 tccataaatg tccaatataa agcaatgaaa atcggcattt ggattaaaat tggtaagcag
    12661 ccacccattg ggttcacttt ttcttctctg tagagtttca tcatctcttg gctcatacgt
    12721 tggcggtcgt cgccgaaacg ttcacgcatt tcagtaatgc gaggttgtaa catacgcatt
    12781 tttgccatcg aggtgtattg tgctttggtt aatgggtaaa gaatggtttt cactacaata
    12841 gtgacaccga taattgccaa gccccagttg cttacgattt tttgaattgc ggttagtaac
    12901 cagaaaagcg gtttagcgat aaaccacgcc cagccgtaat ctacggttaa gtctaggtga
    12961 tttgctgatt cgcccatttc tttctgatct ttagaacctg tccaaagttt gctatttaaa
    13021 ttagcctctg aatttggcgc aatcgtagtt aaagggccac ggtaaccgat agttgctacc
    13081 ccattattgg tgcgtgaata aaggctgtta tccgcatctt ggtttggcac ccaagcagac
    13141 acgaaatagt gctgtaatac cgcaatccaa cccgctttgg tgtccacgct taagttggct
    13201 ttttccatat cttggaaact gtattttttg tagttggttt ctgaagaaga ataagccccg
    13261 ccggtgtaag tcggcatggt taaattgccg gaactttcaa ctatagagtg ttttaattgc
    13321 ccgtaaggct gaacttcaat cgcttgtgca gtattatttt tgatattgaa gtttacccca
    13381 acatcgtagc taccacgttt tagcgtgaaa gttttggtgt aaaccacacc ctctttttca
    13441 aaggttaatg gtacagaaat ttcattttgc ccttcggcta atttgaagct atctgccgtt
    13501 accgcatatt gtgggcgacc ggcattggta tcaatcccgt ttttacccac taaaccgctt
    13561 tgagcaacgt agattttgtc gccgtcttgc tgtaatagtt taaatggcgt gttagagtgt
    13621 aattcagcat tgtgttttaa caaatctgag ccgatgacat caccgcctaa ggtatcaata
    13681 gtcagacgta atacatcgct ttccacggta atggttttac cttgcgtgat gctatctgcg
    13741 attggattat tggcattgga agcagacgga agatcacccg cttgttgggt ttgtgctgcc
    13801 acttgagctt gtttttgtgc ttgaatttca ggatcaaaat cttgttgcca ttgtgtaaaa
    13861 atcaaaatag acacaagaaa taaacccatt agcagtaagc cacgattatt catgttggaa
    13921 ttctcttgtt agtaatggat aaaaagaaag gtattttata ataggttagc ttgttttcca
    13981 aacgcctttt atgaacaagc ggtcggattt tccaagtttt ttgcaaaatt ttcggagaat
    14041 ttgaccgctt gtggagaata agaaactagc gtttatctaa ggttttggtg gaaaggcgag
    14101 caactgcaca caggttacct tgttcgtctt taatgtcgat attccaaacc tgtacttcac
    14161 gccctaattt cagcggtgta gctttggcaa tcgcttttgt gcctgccgga atcgatttta
    14221 aatggctgat gtttagctcc attcccaccg caatttgatg gggttcacac accattaacg
    14281 cccctgcatt ggcagtagtt tccgcgagtg ctgccgatac accgccgtgc aatacgccaa
    14341 acggctgttg agtgcgttcg tccacctgaa gctgtgcttc aatccaatct tcaccgatag
    14401 cggtaaattc aatccctaag tgtgacaccg ccgatttttg gctgagtgtg tttaattgtt
    14461 cacaagttgc tgtttgcttc caaatggtca ttattatttc ctgtctaata aaaaagctgt
    14521 ctatttagac agctttcatt atctctttga gcgaaacata ctacgccaat agtacattgt
    14581 ttggtcgccc atattacctt aagccatata gcactaagga ggtgatttat gtgagaaaat
    14641 cagaagtttt ctttctggtt gcgttgctaa tattattagc aacttccgct agcattaaag
    14701 tactcaccat acttgatgtg ctagtttggt tattcgctag ataacctaaa atcagacaga
    14761 ggcaggctgg ttacctgcct cgctttttat tctaagtact tttaggttac atttcaacct
    14821 taaatcacgt ccagcaacgc ttgaattggg tgtttaatgc cttgttgttc aaaacgtttg
    14881 acttgcgagc ggcaggagta gccggttgct aggcaacgct caagcggttt attttttaat
    14941 ttaatttgcc atgattgctg ataaatcgct ttcgacattt caacgtgttt ggtttcgtgt
    15001 ccgaacgtgc ctgccattcc acagcaaccg acattttcat tgagtaaggt ttcaccaaaa
    15061 tgggtgaaaa tagcttgcca ctctttcatt gagcttggca aggcggtgga ttcggtgcag
    15121 tgagcaaata aataccacgg caagcggtcg gaatttgccg attttttgca attttccagc
    15181 tcgccgtttt taatcacttc ccttaaccat tcgtgtgcca ataagacttt gaaatccccc
    15241 cgagcttctt tgaggatctc tttgtattct tcacgataaa gcaaagttaa ggcaggatcg
    15301 acagccacca tcggtagccc caatttcgcc acacggttta aaaaatcggc ttggtttttc
    15361 gctgttttcg caaatttatg caaaaagcct ttaacgtgtt gtgctttacc gcttggcttg
    15421 aatggcaaca caatcggctt aaagcctaat tttttaatga gagcgataaa gtctgccacc
    15481 actttggcat cgtaataaga ggtaaacgga tcttgcacaa taaacaaggt tttgcaattt
    15541 tttgcagaaa aatcaccgct tgtagcttgt tgttcaaggc tttctaagct ctcgccttgg
    15601 tagccgactt ccaccaactg atgttgcaga tttggcactg acaatgccgg caaataggtc
    15661 attccaatgg ttttgtttgc agctttttcg gcaaaagttg aggtgctgaa aaagttaaaa
    15721 aaacgtggtt gtttcgccat taaaggggcg ataaattcta agtttgagac cacataatct
    15781 ttcagtggtc gcaaatagcg gctgtggtaa agctcgttaa attgcgatct gaacgtcggt
    15841 acgtcaattt tgattgggca ttggctggca caggctttgc aggcaaggca ggtgtccatc
    15901 gccgctttga cttcgtgtga aaaatcatac tctttgtttt tattgagcgt gttgcgaatt
    15961 tttgcaacaa aatcagctaa tttgaccgct tgtttgcgag gtttgaagat caaatcgtcc
    16021 ggcgaaacgt tttgttcggt aagtaatctg agccattcac gcacaagagt agcccgccct
    16081 ttcggtgagt aaagacggtt gcccgagact ttcattgaag ggcacatcgt gctgtgtaca
    16141 tcaaagttaa aacatagccc gttgccgtta caattcattg ctcctttaaa ttcttctcgc
    16201 acttggattg gaatttggcg gtcaaaatcg gctcgcattt gtgagtcaat cgggtagagc
    16261 gaggtttcgc tttctaatgg tgtacaaatt ttacctgggt tcaagcgatt gtacgggtca
    16321 aataaggttt tgatgtaacg gagttcttgc cacaaagttt cgccaaagaa acgttcgccg
    16381 tagtaagaac gcataccttt gccgtgttcg ccccaaatca agccaccgta tttggcggtg
    16441 agttcgacta cttggtcgga aatttgctta aaggtttcca cttgggcttt gtcgcataag
    16501 tcaagagcag ggcgaacgtg tagcacgccg gcatcaacgt ggccgaacat tccgtaaggc
    16561 agattatagc gatctaataa agctcgaaat tccacgatgt aatcggcaag gttttccggt
    16621 ggcacagcgg tgtcttctac aaaggcgatc ggttttgccc agcctttggc attgcctagc
    16681 aggcctacgg cttttttccg cattgcgtag attttctcga tagaatttac atcactcgtg
    16741 agttggtagc cgataatccc ggcttcatta tttgccattt tttgatcaag gctttggcag
    16801 agtgctttca cttgggtttc aatttgagtc tgatcgcttg aggcatattc aacaatgtta
    16861 atccctaaaa tcgggttggc tgggtcttcg gttaataaat ctgacaccga atgccagacg
    16921 atatcttgct tggcaagatt gagcactttg gaatcaaccg tttccaccga taaggctttt
    16981 gcctctaaca taaaaggagc ggagcgtaag gcggcatcaa aggaattata tttaatatta
    17041 attaaggtgc gatatttggg aatcggcagt aaattcagtt tggcttcgca aataaaggca
    17101 agcgaacctt cagaaccggt taaaatacgg gtaaggttaa attcgctttc accatggtta
    17161 aacacatttt ttaaatcata gccggtaata aaacggttaa gctgaggcag ttcgttcagc
    17221 actttggggc gtaatgtttt gcaacggttg aaaatttcac ggtgcaaggt tttgccgaga
    17281 gcggagagat ttaacccttc aatatgtgca aaaaaatcgg cagatttgac cgcttgtgtc
    17341 tctaaaatat cgccgttaat aagcacagat ttgatggcaa gaatatgatc agatgttttg
    17401 ccatattgca aagaaccttg cccagaggca tcggtgttga tcattccgcc taaagtcgct
    17461 cggttactgg tagaaagttc gggggaaaag aaaagtccat gtggttttaa aaattgattg
    17521 agctggtctt tcaccacgcc agcctgcact cgaacccaac gctcttccac attcagttcc
    17581 aaaatctgat tcatatggcg ggagagatca acaataatat tattgttaag agattgcccg
    17641 ttagtgcctg tgccaccgcc tcgtggagta aaagttaaat gttgatattc tggcttttgg
    17701 gcaagtttgg ttagaattac gacatcagaa acggatttcg gaaacagaat agcttgcgga
    17761 atttgctgat acacgctgtt gtctgttgcc agtgaaagcc tatctgcata atttgatgca
    17821 atttccccac taaaatgctg attgacgagt tcagttaaat aggattgggt ggctttatcc
    17881 agttgcggta cttcagagag tctaggtatc ataagctgtg tttggttttt tataataaaa
    17941 gcactaaatt ttgcttatct tagcaatttt tctaaaaatt gggaatgg
//
LOCUS       DANLXK010000043        17161 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.043, whole genome shotgun sequence.
ACCESSION   DANLXK010000043 DANLXK010000000
VERSION     DANLXK010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17161
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            63..986
                     /gene="oppB"
                     /locus_tag="PXD88_001200"
     CDS             63..986
                     /gene="oppB"
                     /locus_tag="PXD88_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL6280783.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            1001..1900
                     /gene="oppC"
                     /locus_tag="PXD88_001201"
     CDS             1001..1900
                     /gene="oppC"
                     /locus_tag="PXD88_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL6280784.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            1910..3505
                     /locus_tag="PXD88_001202"
     CDS             1910..3505
                     /locus_tag="PXD88_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280785.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
     gene            3685..4080
                     /locus_tag="PXD88_001203"
     CDS             3685..4080
                     /locus_tag="PXD88_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6280786.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
     gene            complement(4290..6449)
                     /locus_tag="PXD88_001204"
     CDS             complement(4290..6449)
                     /locus_tag="PXD88_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL6280787.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARLSSQKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
     gene            6556..7422
                     /locus_tag="PXD88_001205"
     CDS             6556..7422
                     /locus_tag="PXD88_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6280788.1"
                     /translation="MEYKMRTLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGK
                     ADKLVGVDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQI
                     KASGIPLLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHS
                     TDKEVLVLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADV
                     ILLASRNQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYA
                     HQILTTIQPCLK"
     gene            7433..8419
                     /locus_tag="PXD88_001206"
     CDS             7433..8419
                     /locus_tag="PXD88_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6280789.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            8419..9225
                     /locus_tag="PXD88_001207"
     CDS             8419..9225
                     /locus_tag="PXD88_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280790.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(9246..9884)
                     /gene="purN"
                     /locus_tag="PXD88_001208"
     CDS             complement(9246..9884)
                     /gene="purN"
                     /locus_tag="PXD88_001208"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL6280791.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(9991..12148)
                     /locus_tag="PXD88_001209"
                     /pseudo
     CDS             complement(9991..12148)
                     /locus_tag="PXD88_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(12202..13038)
                     /locus_tag="PXD88_001210"
     CDS             complement(12202..13038)
                     /locus_tag="PXD88_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL6280792.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
     gene            complement(13196..14458)
                     /locus_tag="PXD88_001211"
     CDS             complement(13196..14458)
                     /locus_tag="PXD88_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL6280793.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
     gene            complement(14734..14955)
                     /locus_tag="PXD88_001212"
     CDS             complement(14734..14955)
                     /locus_tag="PXD88_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280794.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
     gene            complement(15043..16074)
                     /locus_tag="PXD88_001213"
     CDS             complement(15043..16074)
                     /locus_tag="PXD88_001213"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL6280795.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            complement(16162..17139)
                     /locus_tag="PXD88_001214"
     CDS             complement(16162..17139)
                     /locus_tag="PXD88_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL6280796.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
BASE COUNT         4914 a         3611 c         3346 g         5290 t
ORIGIN      
        1 ttacaaagcc gttaatttac gctattaatt gcctaccaat ataactaaaa agagtggtgc
       61 ttatgctgaa gtttattttt aaacgtcttc ttgaggcgat tccaacccta ctaattctga
      121 ttaccttttc ctttttcctg atgcggcttg ccccgggtag cccatttacc agtgagaaag
      181 cctatccgcc gaaagtaatg gcaaatatcg aggcaaaata tcacctgaat gaaccgctgt
      241 ataagcagta ttttctttat atggaaaatc tgtcaaaagg cgatttcggt ccatctttta
      301 aatataaaga tcaatcggta aataatctga ttgcttctgc gtttcctgtt tcgataaaac
      361 tgggcattac tgcctttatt tttgcggtgc ttatcggttt aaccgcagga actatcgctg
      421 cacttaagca aaatagtaaa tgggattatt tagtgatggg cttttcaatg acgggtatta
      481 ttatgccgag ctttgtcttt gctccgctgt tggtactcat gtttgcgatt tatctcaaat
      541 ggttgcctgc cggtggttgg aacggtggtc agctctacta tatggtttta cctgttctct
      601 ctttaaccat tagctatgtt gccggcattg cccgtattac tcgtggttca atgattgagg
      661 tgttgcactc taattttatt cgcaccgcta aggcaaaagg cttgccaatg cgtaaaatta
      721 ttttcaaaca cgctttgcgt ccggcattgt tgcctgtgat cacttattta ggcccggctt
      781 ttgttggcat tattaccggc tcgatggtaa ttgaaagcgt gtttggctta ccgggaatcg
      841 ggcagttgtt cgtaaacgga gcattaaatc gtgactattc attagtatta agcctaacca
      901 ttttggtagg tacgctcacc attttattta atgcgattgt tgatatttta tatgcggtca
      961 tcgacccgaa aattcgttat tcataggagt aaagcggaaa atgcaaaatt cttcaaaaaa
     1021 tcaaccgctt gttgaggtta cctcaaccat tcaaggacga agtttatggc aagatgcacg
     1081 ccgccgtttt ttccgaaata aggcggctgt ggcaagtttg attattcttt gttgtattat
     1141 tctttttatt acctttgccc caatgctaat gccgtttagc tatgaagata ccgattggaa
     1201 tatgatgggg attgctccgg attttgaatc tcaacactat ttcggtactg attcttcagg
     1261 gcgtgatttg ctggttcgag ttgcaatcgg tggacgcatt tcgttaatgg tagggattgc
     1321 cggtgcatta attgcggtgc ttatcggtac aatctatgga gcaatttccg gttatttcgg
     1381 cggtaaagtc gatatggtga tgatgcgttt tctggaaatt ttaagctcat tcccatttat
     1441 gttcttcgta attttgctgg ttacgttctt cgggcagaat attttcctga ttttcattgc
     1501 aatcggtatg gtagcgtggc tgaaccttgc ccgtattgta cgtggtcaaa ctctttcgct
     1561 taaaaataaa gagtttgtgg aagcagcgat tgtgtgtggc gtttcccgcc gtcaaattat
     1621 ttggcgacac attgtgccta acgttttagg cttagtggtg gtttatgcct cccttgaagt
     1681 accatctctg attttgtttg aatcgttctt aagtttctta gggcttggta cacaagagcc
     1741 gatgagcagt tggggggcat tattaagcga cggagcggca caaatggaaa cctcgccttg
     1801 gctactggct ttccctgcct ttttcttatg tttaacactg ttttgtttta attttattgg
     1861 tgatggcttg cgtgatgccc tcgatccaaa agataaatag aggtttagaa tggaattatt
     1921 agcagtaaat aatctcgatg tttatttaaa aacggacgaa gaattagttc acgcagtgcg
     1981 taatgtctcg ttctcgattg aaaaagggca aacccttgcg attgtggggg aatcgggttc
     2041 gggtaaatcc gttacttcaa tggcaattat gcagttattg cctaaaaata tcgtctcatt
     2101 cggtgaacgc tcaagcatca tttttgaaga acaaaacttg cttactctat ctgaaaaagc
     2161 aatgcaaaca gttcgaggtg atcgcatcgg tatgattttc caagagccaa tgacctcact
     2221 caatccttat atgccgattg gcaagcaggt tgctgagacg gttcaaaccc ataatccgca
     2281 aatcagcaat gccgaagcgg aaaaaatggt gttggaaact ttgcaaaaag taaaaattcc
     2341 cgatgcggaa aagaaaatga tttgctatcc gcacgagttt tccggcggtc agctacaacg
     2401 aattatgatt gcaatggcaa ttatcaacaa acccgattta ttgattgccg atgagccgac
     2461 caccgccctg gatgtcacaa cccaagcgga aattttggat ttaatgcacg acttacagcg
     2521 tgatatggga atggcgatta tcttaatttc ccacgattta cgcttggtgc ataaatacag
     2581 tgacttagtc tgcgtaatgc aaaacggcga aattattgag cgaggcgaaa cggaaactgt
     2641 gttcaccaat ccgcaacatc cttatacggt ggagctactt accccgattc caactaattt
     2701 aaaaggggaa ttaccgccaa atgcaccaac cttgcttcag ggtgagcata ttaaggtaga
     2761 ttatatttta aaacgctcgc tattcggtaa gccgaaaaag gtgtttaatg cgttaaaaga
     2821 tatttcattg cacttgaaaa ccggcgaaac gctcggcatt gtaggcgaat ccggctccgg
     2881 gaaatctacc cttgggcgtg ccattatgca gattttagat tatcgcggca atattacatt
     2941 tgcaggtaag acactggcta atctgaataa agccgaacgt caagccctga aaaaagatat
     3001 gcaaatggtg ttccaagacc cgttcaactc actttctcct cgcttaacag ttggggaaat
     3061 tattgctgag ggcttaaccg tacattgccc tcaaatgagc aaaaccgaac ggcgggaaaa
     3121 agtaatgaaa atgttggaag aggttaatct caaccctgca atgattaacc gctatccgca
     3181 cgaattttcg ggcggacaac gccagcggat tgcgattgca agggcaatca ttttagagcc
     3241 gaaatttgta ttgcttgatg agccaacctc agcacttgac cgctctactc agatcactgt
     3301 aattgaattg cttaaccgct tacagaaaaa atacggctta agttatattt tcatcagcca
     3361 cgatttggcg gtcatcaagg cacttagcga ccgagtgatt gtaatgagcc aaggtgagat
     3421 tgtagaaagc ggtgatgtca ctcaaatttt tgaaaatcca caacaagaat acaccaagcg
     3481 gttgatttta gcctctaatt tgtaacccct tccacaaggt cttattctac caaaaaacaa
     3541 gaccttgtca ttttatgcta gcaaaacatt gtaattttga tattttattt caattttttg
     3601 aaaaaatatg gaactttata taaaactcac tttctaaaca atacgttatc tgaactaaga
     3661 taacgcttat ttaaaggaaa atatatgaaa aaattgatga tattcgcaac aactgccatg
     3721 attgtaagca atttagccca tgcagcaggt gaacaaagtg atgcaagaga agcccacgaa
     3781 agcaccgtaa aaacctcaac tgttaagtat agctgccaaa acggcaaaaa attaagcgtg
     3841 aaatacggct tcaataaaca aggcattcca acctatgctg aggcaaaatt aagcggtaaa
     3901 aaacgtttta tgccgatcaa cctatacacg acagatgcaa ccggcactaa ctttggtgac
     3961 gaaaacaatt tcagccttta cggtgatcca atggaattta ccaaccaccg taaagcatca
     4021 gtaaatatcc aaagccccgc aagtgaaatt ttatataaag gttgcacacc tcaaaaatag
     4081 ataaaaagta aaatgagtcc gctctgataa gtggcttttt aatagctgtt tattgcagat
     4141 aggaaagcat tttgttttta tctactatcc agaaacaagc ggttaaattt gtttaatttt
     4201 ttacaaaaaa tgggccaaaa ttaaccgctt gtttattact ataaagaaat aagtacgtaa
     4261 aaattaactc ttacatttaa tgcttatctc taaaatttaa actccactga tgccattaca
     4321 tagcgctctg gagcaaggta acgatttaag ccttcgccag ttatactgtt ggcaactcca
     4381 ggactagtta taccaatagt tcttaaacta tcccaagtcc aatatttttt attaaagaga
     4441 ttataaaccc caactttaac aatcgctctt tctccaaact ttttgtgtgc aactaagtca
     4501 aatacggtgg ctgaattact taagtatggg taagtggtta atgatttatc gtaacttaaa
     4561 tacccagtat tggctaaaat agcatactgt tgtgcatatt ttgctttttt gccttgtgtg
     4621 tatgtgccgt ttaggtgtat cgcccagtca ttgttcacag ctcgataacc tatgccgaac
     4681 aatgctttta acggttgaac cgtgagtaag tcggtaccat cattacgttt gccacgagca
     4741 taaccaaatc caccattaag ctcaaagcct tgtggaattg cattccacgc tgtgtttaag
     4801 tctaaagttc cgttaatatc aacacctttg attttagctc ggttaacatt ttgcgattgg
     4861 taaatattgt taccaatagt ggcaagatca atcagatttc tatagtgggt atggtaagcg
     4921 gctacgctca agctacctaa tgaaccatta cctaccagtg aaatttcatt acctaagctt
     4981 gtttccggtt ttaagttagt atttgctaag aaagtttggc ttgctccacg cccttgaact
     5041 tcacggttaa agaacatttc acttgcggta ggtgttctaa aaccacggct gagtttatag
     5101 ccaatttgcc atacaggaga gagctgataa tttaaaccaa tatctcccgc ccaattgtta
     5161 aaggttttat ctgacaaact attatcatca gaatgtaatt tctgactgct caatcgagca
     5221 tttaaatgag cagatagatt ttgtgtcagt aaaatagagt ctcccatcaa aatatggaaa
     5281 gacttggttt ttgccggaga ctgcatattt tgatcggttg gcgtaatacc tgctgtatag
     5341 gtttgcatat caaaactgaa atcagataca ccatagccta attccgttga caatttatgt
     5401 tcggtattac ctagatcaac aggcttgaat gtaacaccta agctaccttc aacattttta
     5461 gtattaaaag cccgtttggt attatctgtt tttgtaccac gggcaatagt gatttgatcg
     5521 ttaatacctg aaatttcagt atcctgtttg gttaccgcaa ctttaatatt ttcaagaata
     5581 ctgttttttg gagtgtataa ataagtaacg ccataagttt caatttcctg cacatccaaa
     5641 aaatcacgta atgtgacggt agaataagaa agctcttgac cggcgttttt actgcgttgc
     5701 ttagaagttt ttaattcaag gcgattttca tcattccatt ttagccctaa ttttgccaag
     5761 tagctgtatt gattattttt gtaaggattt ggtaaaccac gaccacttcc cataatatcc
     5821 ggacctttag acgttgtttg tgtttcgtgt ccttgacggt ggctatacat aaccaaagca
     5881 tccgcatatt gaccatccgc agcaatacct gccgtctcaa tattctcttt attttgaccg
     5941 ttataggtat atttcaacat cccaccaaat tggcgacctt tcattaaaat atcacttacg
     6001 gttttagttt tatagttcac agagccgcct aatgccccat tgcctacttt tgtgcttgag
     6061 cctttttcaa tggttacatc gctcattaat tcagtatcga tttcagggcg agatttattg
     6121 tagtaactat agcgactaaa ggtggcatag ttatttgatg ctgcttgcga tatgccatca
     6181 actgttactg ccacttgatt accttcaaca ccacggatat taaacccttg tgggccaaag
     6241 cggcctgttt gcggaacgcc catatcagta ctataacgta ctaaatcttc attgctcatc
     6301 accgcttgct gtttaagtag gttctcctgc tgctcattta cttcaatagt atctagttca
     6361 atgctactaa tctttgtttc ttgagctaag gagagttgag aaataaaggg agtaatcgct
     6421 attgctaata cagtttgctt tatttgcata ttttagatcc tctagttagt ttaatccgtt
     6481 taatgttaac actatatcat tttaattgaa aattgaaata ataataatta ttatttaagt
     6541 ttagataaaa atcaaatgga gtataaaatg agaaccttac ttttttcttt cattgcccta
     6601 tcaatgtgtt taaataccac aaaggcggca gaaaaaattg tttcaactgc gggctatgct
     6661 tccgaaattg tcgcagcact aggaaaagct gataagttag tcggtgtgga taccacttca
     6721 gttaaacctc aaacgataat ggagaaaaaa cctaaaatcg gttatcgtcg ccagctttct
     6781 gctgaaggta ttctctcttt aaccccagat ttgattattt tagcccctga tgccggccct
     6841 aacgcagtta ttgagcaaat taaagccagc ggtattccat tacttcactt aggagagaaa
     6901 ccgagcttag cagggattcg tgaggatatt cagcaaattg ccaaggcgat tggtgcagaa
     6961 tcagaggcaa aacaattaac agaaaccatt ctggcagatg aaaaaaaatt agccgacatt
     7021 cgtagccaac attctactga caaagaagtc ttagtgctga ttgacactgc atcgcaaggt
     7081 atctttgggc tagggaaaaa gagtgtgggt gatcatttct taaccttgtt aaatctaaac
     7141 aatagtttca atgctgaggg caataagcca ctcgccaatg aggctttagc tgcaagcaat
     7201 gccgatgtta ttttattagc ctcccgtaat caggcaaaag aatctgcaac gatcagtaaa
     7261 ttagcagaat ccagcccaca atacgcccaa ctcacaaata cacaagcggg caaaaaaggc
     7321 tgtgtttttg caatcaatat tttagatgcc ttgggctttg ggccttacac tgctcaatat
     7381 gcacaccaaa ttctcaccac tattcaacct tgtttaaaat aacggatacg ctttgaaact
     7441 gcatttaacc ttaattttca ctttaattat cagcttagtg atttgtaccc atttaggggc
     7501 gatgtcatta cccctatccg cttggcactg caacaacgct gaatgcgaaa gtgcagccta
     7561 tattttatgg caaatccgcc tgcctcgatt actaggggca ttattcatcg gggcagccct
     7621 cgctattagc ggagcaacaa tgcaagggct gtttcgcaat ccgttagtag atccggggat
     7681 tattggtgtc tcttcaggtg ctgcattggc tgcggcatta tatattgtgg tgattcagcc
     7741 actactgccg gaatcaatca gctattatgc tctacctatt gccgcctttt tagggggctg
     7801 gctggtgact tttatgctct atttactttc tcaacgtaac gggcaactac atatcgccat
     7861 tatgctatta attggtattg ctctagctgc atttagtggc gctttaaccg gcatactgat
     7921 ttatgttgcc gatgataacc aacttcgtag tttaaccttt tggagtatgg gatctttagc
     7981 aggtatgaat tggcaaatgg tggcaatgat ggctgcggtt gtcttcattt gtagcccact
     8041 tatttggcgg gaacaccgtg cgttaaacgc cttaacatta ggtgaagaag atgcacaata
     8101 cattggtttt gacattgcaa aagtcaaacg tcgtcttgtg ttttacgttg ccttattaac
     8161 cggcacaagc gttgcctgtg ttggggctat cggctttgtc gggctggtta ttccacattt
     8221 aatgcgttta ctgggaggca gtaaccaccg ccatttatta ctcaatagtt tggtttgcgg
     8281 tgcaatctta ttaatgattg cagatactct tgccagaacc ctagccgccc cggcagaaat
     8341 cccgattggt atttttaccg ccttatttgg tgcgccattc cttgcagtaa tggtatggaa
     8401 aagtgggaaa catatctaat gagcaattta ttaacttgcc aaaatttaag catcgttcat
     8461 caacaaaaaa agttgctgga gattcaagaa attgcctttg aacaaggaaa atttaccgcc
     8521 atcatcggtc caaacggagc cggcaaaaca accttgctca aagccttaag cggtaataat
     8581 gcacaaacta acagtgccgt attttatcaa catcaacgct taacagactt aaacggatat
     8641 gctctggctc aaaaacgggc aatgctcagc caacagagcc aaattgcctt tcccttaaaa
     8701 gtagaagaat tggtacaact cggaagagag ccatatcgcc aaagtgaatt tgcaaaattt
     8761 aatgaaaaaa taaccgcttg ggctatggaa acaatgtctt taaccgcatt aaaagaaaga
     8821 agtagcatac aactttccgg tggagaacaa catcgagcgc atattgctcg agtgctggct
     8881 caactcgttc ctgaaccgaa tgccgattta agcggaagct ggcttttgct tgatgaaccc
     8941 accaaccatt tggatattca tcaccaatat cagctttttt ccttactaca aaagctgaaa
     9001 caacaaggct taactatcat tgcgattttg cacgatcctg cattggcaat aaatcaagcc
     9061 gatcatatct taatgctaaa aaatggagaa aaatttgctg aaatgtccgc taaagccatt
     9121 gcagaaagtt gtttattaga tgagctgtat gaaatgaaaa tgggctgtcg ctattgccct
     9181 cacagcgggc aatattatct ttgccctgca ttagctgaaa gttagggtgc gatgcaccct
     9241 atcgtttaat cttctgcata tccacaagca ggcagtagtt taccgtctaa atacgctttg
     9301 ccgtgctgag aaactaatct acccgaacag aaccactcaa tcaccaacgg ataatatcga
     9361 tgttcttgct caaccactcg agccattaca tcttcaatct catcttcagg ataaatcggc
     9421 actttagctt gtaataccac cgcaccagca tccacttctt cattcacgaa atgaatagtc
     9481 gtgccgtgtt cactttcccc agcctctatc gctctttgat aagtgtttag ccctgggtat
     9541 ttaggtaata aggaagggtg aatattgagt attttgccag caaaatgttg cgtaaattca
     9601 ggcgttaaaa ttttcatata gccggctaat acaattaact cagctcctaa ctgctcaatt
     9661 tgttcggcaa tcgcaagatc catttccaca ttgctttggt aatctttacg agaaaataca
     9721 aatgtcggga ttcccgcctg tttagctcga atcagcccat aggcatctgc cttattgcaa
     9781 attacaccgc aaatttgacc gcttgtatcc gcagattttt gcgcatcaat cattgcttgt
     9841 aggttagaac cattccctga aattaaaacc acaaattttt tcatattaca caccggctga
     9901 atattcatcg ttctggatat tatgccttga atctcaacat cagtacagga aagaaaaagg
     9961 gcgtattggt taaaataagc cactttcaag ctagaaacgc acctctgccc ctagtgtgta
    10021 agttcgacct ctggcactat ttgtgaaacg ataggtgtct gtatcatagt catactcttc
    10081 tgcggtggaa gagttatacg catttaaggc atcaagataa tttcggttca tcacattttg
    10141 taccccggct tttaaggtta aatgtttatt cactttgtaa tttgcatata aatcgataat
    10201 caccggaata ttcggtaact gctcgtgaat aatgttgcca tcttcgtcta aatcaatacc
    10261 gacacgtttc gctttgcctg tatatttaaa aatgctagac agtgttaatt ttttatccag
    10321 caatttagcc cctagctcca aagtcgcata atcttttggt agctgggtat aagcttcagt
    10381 gccaaatcca taaagaatag tcgcaccttt tgaagtgggt gctgtgcttt cagttcgggt
    10441 ataactacca ttgacaaaaa aagcatcgga atcgtaagcc agctcaactt cccaacctcg
    10501 atttttaacc ttttcagggt gattcacata aatttggaac tgtatagcat tggtagcatc
    10561 acttgaattt cgacatactg ttggcccaca accatacaac gagaggttat acaaatagtc
    10621 tttaatgcgt gagttaaaat ataccgcttt tagccccaag atatcattat tgagtaatac
    10681 attatcttga tgaatattaa acccaatctc ataggttttc gcactttctg gtttcaaaaa
    10741 cgggttcaca ctcaagccat ttcgactggt attaaacatt tcttgcacat taggcgaacg
    10801 ggaggtttgt ttgtaactga caaaaggttg aaaccaatca gcaacctgaa atgctaaagt
    10861 ggcagaagga ttcaacttat aatgtttttt attaacatca aacccaaaag aagggaaaca
    10921 ataatccata tcatcgctat cgcattctgg cttatatcct tttaactgat agcgtgaata
    10981 gtgaagactt gaatttaaag tgacaatgcc gtatttccat tcggtgtcta ggtaaaggga
    11041 atcaatattt tgcttacctg ccggcccaaa agcggcattg ctaatcgctc catcattatt
    11101 cttactttcc ggtaaatcac gggaatattt atttccctga ctcaaaacgg ctggtgttat
    11161 tcaaatcaaa catccacatt ttgtttttgg ttgaggcatc ttctaatgtc catagttttg
    11221 catcatcgtg gaaatcttgc ttagtttctg ttactgctgt taggaatttc agatcaatcc
    11281 aatcagattg aggctggtaa ctggattcta aggaataggt cacactatca atattacgcc
    11341 ccactaagct atttttatat tgacgtccgg acaatttaaa ctctgaatct tgatttggct
    11401 taaaggcaat ttttcccata taagattcag ggtgattttt taacccttgc atataagcag
    11461 aatccgttgc cattgtgcca ttacctcggc gataattttg actgatacta cttttgctaa
    11521 aagccaataa actgccaaga gaaccacttt ccagcacatc aacttttccg gctagtgcaa
    11581 gcattccgtt ttttcccaga tcattattgc cataattaaa acggcttaat acgccgactt
    11641 tatgttgttc tagtagaata tcttcgacat caatcgtttt aaaattagca ctaccggcta
    11701 aagcattcaa tccggctgca ccattgttgt agcctttcgc aatatcaact cgggttaaaa
    11761 aattttgatc aattaaagtg ctgaattggc tcattggccc gttaccatca gtgtggaact
    11821 taccacctcc gtttgctgat gtaccaagct gtgtttgtgg cacgccatca actaaggtat
    11881 ttacccgacc aagaccactc atattacgaa tattcacact cacgccccct tgccccgggt
    11941 caatttgggt atagccacct gcgacagaac ggacaatact atctaaactt tgcattgcat
    12001 tcacattcat tgctcgagaa ctcaccgagc cggctttact gaaattctca aaattagggt
    12061 tttccacagt gccataaacc gtcacagtat caagctccgc aatatttttc gccttttcct
    12121 ctgccaatgc agtttgcgat cctcccatac acaaaaccgg aaacaaaatg cgtgtgatta
    12181 tattaaattt cataattctc cttattgagt gacccaaaga taatctgcct gtgaagaagt
    12241 aatttcttct ctctctgttt taagcattag caccgctact ttttttgttc ggtcatattc
    12301 cgcaatatgc aacggaacgc caagatcttt gcgaacgtgg tggttacctg caatcagcaa
    12361 gctagtcgat aacgcatttt ttactaattt ttctgccatt ctgcgatcac ggaattgttg
    12421 tactgccacc atattttcca tcgggtaagg cattccgtga ttcattgaca gcaacagttg
    12481 tgcgatcttt tgcttaactt cagaggaagt ggatacagaa ccttttaatg gctccgcccc
    12541 atttaataaa atttcaacct ctttatctgt taagttagtg gctataacac gactatttga
    12601 acctaagctc tctaccacta aatcttgata catcttccaa tcccattttt gccattgaat
    12661 tgcctctctt aaatccgtgg ctgataaatt aaccggtcgg ttaaactgaa tgcgatcaat
    12721 cgcaggctgc tgatccacat ttaacatctc caacgcaatt aaatgtaact tggctttctt
    12781 cgtaagttga ttaaataaat acaattcaat ttggtggtga attaactgag tatgctcctc
    12841 accaactaaa acgtaatctt gagaagatag acgggaaagt agttcagtaa atgaaatcgt
    12901 ttgattggta ttcagatcaa taatttggcc gatagagtcc acgttttgtt cattaaggga
    12961 ttgcgttgaa accgagcagc ctaaaagaaa aaaagccata aaaaggctag ctaaaaaaga
    13021 ggaaatacga ggtaacataa caaaaaataa attaatgaga attattatca ttatgttatg
    13081 taaaaaaaga aaaatcaatc cattttcaga aaacagataa agaaaatgat tgataaaaca
    13141 aaaagcggta atatttctaa aaaatattac cgcttgaaaa agtgtaaagt tgagattatg
    13201 cgtacactgg taaacgttta caaatgtcta aaactttcgc tttagtctct gcaatcacct
    13261 gttcgtgatt atccttacca atgctatcta gcacatcgca catccagccg gctaatgctg
    13321 tcacctctgc ttctttaaaa ccacggcggg tcacagaagg cgtacccaca cgaatacctg
    13381 aagtcacgaa tggtttttga gggtcgttcg gcaccgagtt tttattcacg gtaatgttcg
    13441 cagctcctaa tgcagcatct gccgctttgc cggttaaacc ttgttttaca aagctaacaa
    13501 ggaataaatg gttttccgta ccgtttgaaa ccacatcaaa accacgttgc ttaaatacct
    13561 caaccattgc ttttgcattt tttacaactt gttgctgata tgccttaaat tccggctcta
    13621 aagcttcttt aaaacaaacc gcttttgccg caataacgtg catcaatggt ccaccttgac
    13681 cagcagggaa tacggcagat tgcagtttct tatacatttc ttcatcgcca gatgcagata
    13741 aaatcaaacc acctcgaggg ccggctaagg ttttatgggt tgttgtcgtc acgacgtgag
    13801 cgtgaggaag cggatttgga taaactcccg ccgcaattaa gcctgcaacg tgagccatat
    13861 ccacaaataa atatgcccca acttcatcgg caatctcacg catttttgcc caatccataa
    13921 cttgagaata agcagagaaa ccagcaacaa tcattttcgg tttcacttct tgggcttgtt
    13981 tgcgtaatgc ttcataatca attaagcctt catcagtaat gccgtattgt tctgctttat
    14041 aaattttacc agagaagcta actgaagcac cgtgggttaa atgcccgccg tgcgctaaac
    14101 tcatacctaa aatagtgtca cccggattaa gcaacgccat atatacggct gcattcgctt
    14161 gtgagcctga atgcggttga acgttggcat aatctgcccc gaacaatgct ttcgcacggt
    14221 caatcgcaag ttgttctaca atatccacat actcacaacc cccatagtaa cgtttacccg
    14281 gataaccttc tgcatattta ttggttaatt gtgagccttg agcctgcatt acacgtgggc
    14341 ttgcatagtt ttcagatgca attaattcaa tatgttcttc ttgacggcga tcttcatctt
    14401 gaatggcttg ccataatact gcatcgtaat cagcgatatt catatcacgt tttaacattt
    14461 ttggactcct aataagctta agtaaacgtt tgcgtaagtt gatttcacgt tattttacgc
    14521 attttttagt ttcatagata gtattattta tataaaaatt aacttcgagt gaaagaaaaa
    14581 caagcggtca cattttgtaa aaaatttacc aaatatgacc gcttagtatt attcattgaa
    14641 ttaatgatta tgatctttta aatgctttgc ccattggtat gcagcaaatg aaaatgcaag
    14701 caaaagaaat aatccgattg tcaatccgtc catttacatc tcctctgctg tttctcgaaa
    14761 caatcttgcc gttgctaaca aaaaataaac tactgcaaat aaggtaattg agtgtgtaaa
    14821 tttcattagc agtgaatatt ctccatagag aataacagga attgctaaaa ttgcaacttt
    14881 tgccacatcg tccattagtt ttgcccaagc ctcaaaggag cttttcttaa ttggcttttt
    14941 aaatagattt agcatagtgc ctccgtcatt tcctgttatt ttggaagaaa atctggaaac
    15001 gagcaaaaag caaagttgat attttcgatg cagatcgcaa aattattttg cgaattccgc
    15061 acgcaatatc gctgcccctt ggctgagtgc ctgtaattta ccttgtgcga cttggcgtga
    15121 aagtggtgcc attccgcagt tggtgcttgg ataaagttta tccgcatcga caaattgtaa
    15181 tgctttgcgt aacgtatctg ccacttgttc cggtgtttcg ataatgttgg tagccacatc
    15241 aatcgctccc agcattactt ttttgccacg cactaattcg attaagtcca ttggcacacg
    15301 ggagttttgg cactctaacg agataatgtc gatttttgat tgttgcagtt tcgggaaact
    15361 ctcttcgtat tgacgccatt cgttgccgag ggtctgtttc cagtcggtat tggctttaat
    15421 gccgtagccg tagcagatat gcaccgccgt ttcgcatttt aagccttccg ccgcacgctc
    15481 taacgccgcc acgccccagt cgttcagctc atcgaagaag acgttaaatg ccggttcgtc
    15541 aaattgaata atatccaccc ctgccgcttc caactctttg gcttcttcgt tgagaatttt
    15601 ggcaaattcc cacgccaatt tttcacggct tttgtaatga ccgtcataga gagtgtcgat
    15661 cattgtcatc gggccgggta atgcccattt gattggtttg tcggtatgcg cacgcaagaa
    15721 tttggcatcg tccacaaaca ccgatttcgg gcgggaaact gcccccacca cgctcggcac
    15781 gctggcatcg taacggttac gaatgcgcac gatttcacgc ttgctaaaat ccaccccttc
    15841 caaatgctcg ataaaggtgg tcacaaagtg ctggcgggtc tgttcgccat cactaacaat
    15901 atcaatccct gccgcaattt gttcggcaag ggaaacaagg agggcatcac gtttggcttg
    15961 aagtagttcc tcgccttcaa atttccaagg tgaccacagt ttttccggct cggcaagcca
    16021 cgaaggtttt ggtaggctgc cggcggtaga ggttgggaga agaatgttgc tcattttgaa
    16081 ttttcctata aaaagtaggg tgggcgtaag cccaccattg gttatatctc attttatggt
    16141 gggcttacgc ccaccctacg tttattcctc cgtcgcccaa gcctctaaaa tcgcttggta
    16201 acgtttaata aaatgctctt cggtgtattt accctgtttg atcgccaact gggtgcgttc
    16261 ttcacggtca tattccactt tggtgacgga ataatcttgg taagtcaggc tgcctttata
    16321 gacctgccct gcgaccgaat tggcattgta aatttccgga cggtaaattt tttggaacgc
    16381 ttccattgtg gcaatcgtgc tgattagctc taagttagtg taatcattga gtaaatctgc
    16441 attctcatca aagtagaacg catagggtgc aacggatttt ggcggcataa agtaacgtac
    16501 ttttaagccc attttcgcaa aataggcatc agttaatgaa taactatctt gcagatattc
    16561 cacacctaaa attgggtgaa cgttagtggt tcttgtgtag gtacgggtgg ttgccacgct
    16621 taaacagatc accggtggtt ttttatattt tgcggtatat tcaggcgatg ccaataaatg
    16681 cttaaacagc ttgccgtgta actcgccata gccttccggc acgctaaatt gcggtttgtc
    16741 tttattgtga tctaacaaca atacgctgaa atcgtaatca cgcacaaaag aagagaagtt
    16801 attaccgata atgccatcaa tggttttgcc ggttttgtag tcgataacat aggttttcag
    16861 ccactcaatc gcagggaaaa actcgccttt gccttccaca tcaatatcca gtgagacaat
    16921 atccaatttc accgaataac gatccgcatt cgggttatcc cagttcgcta aatcgttaaa
    16981 acggttattg atcatcgcaa tcgcattttg caggttctgt ttgcggtttt cgccacgggc
    17041 aaggttggca aagttggtgg ttaaacgggt gctttgctcc ggttggtaat cttcattaaa
    17101 ttcaatagta tgcacttggc atttaaaatt tgttgtcatt ttattgtccc ctttattttt
    17161 c
//
LOCUS       DANLXK010000044        16581 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.044, whole genome shotgun sequence.
ACCESSION   DANLXK010000044 DANLXK010000000
VERSION     DANLXK010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16581
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..895)
                     /locus_tag="PXD88_001215"
     CDS             complement(<1..895)
                     /locus_tag="PXD88_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280797.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEVAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEISNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGA"
     gene            complement(895..1074)
                     /locus_tag="PXD88_001216"
     CDS             complement(895..1074)
                     /locus_tag="PXD88_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL6280798.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            complement(1075..1716)
                     /locus_tag="PXD88_001217"
     CDS             complement(1075..1716)
                     /locus_tag="PXD88_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL6280799.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDGD"
     gene            complement(1713..2138)
                     /locus_tag="PXD88_001218"
     CDS             complement(1713..2138)
                     /locus_tag="PXD88_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL6280800.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            complement(2138..2479)
                     /locus_tag="PXD88_001219"
     CDS             complement(2138..2479)
                     /locus_tag="PXD88_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280801.1"
                     /translation="MAKPKKNDNEALNTNENTPLEDKVNEQPEDKTDEQPKPPESETK
                     PDDGALINPIAFEVKLKSIHPQATYGRCGYRFNKETAVEIARKALSDEQIITLANDPY
                     LEFVPVVEGDA"
     gene            complement(2527..3444)
                     /locus_tag="PXD88_001220"
     CDS             complement(2527..3444)
                     /locus_tag="PXD88_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL6280802.1"
                     /translation="MFKKSELLKALDTAFRKEFSAGLKVLEPQWGTVAMKVSSSTATN
                     TYAWLGQFPKMQEWVGDRQIKNMQAQGMTIENKLFESTVAVPRTAIEDDQVGLFTPMV
                     KQAAQSAAELPDDLVFSLLKKGKTTLCYDGQNFFDTDHPVYQNVDGTGTSKTQSNITT
                     GSASGKPAFYVLDDSQAIKPLIWQERTTPEIETKFDPSESDHVFMKDQYLWGVRARGN
                     AGFGFWQLIHRVEDSELNSETLEKVLTAMRTLKGDGDKQLNIRPTTLLVPPSLEFAAR
                     KLLEAELIDGTTNTLKGVLKVVVNPFIAE"
     gene            complement(3444..4514)
                     /locus_tag="PXD88_001221"
     CDS             complement(3444..4514)
                     /locus_tag="PXD88_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL6280803.1"
                     /translation="MFKHKFKLNPIALSFKLNQEANGRIQLFPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSQF
                     AKFLTPEEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYTELA
                     KEKSQVVALSAKVNHPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKAWAEKLGKQDLVALSDFLKTVTPNPALASTQSGGEDPNKGTEKVALSAAEIA
                     AAKSLGLSEAAYIEKYKTEESK"
     gene            complement(4773..5189)
                     /locus_tag="PXD88_001222"
     CDS             complement(4773..5189)
                     /locus_tag="PXD88_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6280804.1"
                     /translation="MIEIQIHGIDEIIATLNRIAAKTANKTDLMRNIAGKMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADYNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(5340..6639)
                     /locus_tag="PXD88_001223"
                     /pseudo
     CDS             complement(5340..6639)
                     /locus_tag="PXD88_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248654.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
     gene            complement(6626..8251)
                     /locus_tag="PXD88_001224"
     CDS             complement(6626..8251)
                     /locus_tag="PXD88_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL6280805.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDTENGDITAQHELFMDIEERDSSIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDLVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKHDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGMPIPVQWAMDKLGIPEAQENEAVLGRSAPPQAVGLSANFPQKMTACECGCGGKV
                     HALSAQTKTGIKEQDALDDLADEAFSVPDFNAQFDPITKKAVAVVMACSSYDEAAEKL
                     AAAYPDLVSEEHDRYLANALFLADLLGAANAES"
     gene            complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXD88_001225"
     CDS             complement(8320..9945)
                     /gene="terL"
                     /locus_tag="PXD88_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL6280806.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVETPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLSRILNTKGWRRVRFKAILRFPGNMALW
                     DEWENIYLSEEGDDDTMSDLFYQQHKAEMDKGALVSWLARPILYLMKIRASDGHSAFD
                     SEYQNDPVSGDDAIFANSIQYWTELPDDLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            complement(9949..10095)
                     /locus_tag="PXD88_001226"
     CDS             complement(9949..10095)
                     /locus_tag="PXD88_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280807.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            complement(10095..10595)
                     /locus_tag="PXD88_001227"
     CDS             complement(10095..10595)
                     /locus_tag="PXD88_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL6280808.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            complement(10603..10857)
                     /locus_tag="PXD88_001228"
     CDS             complement(10603..10857)
                     /locus_tag="PXD88_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280809.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            complement(10857..11114)
                     /locus_tag="PXD88_001229"
     CDS             complement(10857..11114)
                     /locus_tag="PXD88_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280810.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            complement(11107..11262)
                     /locus_tag="PXD88_001230"
     CDS             complement(11107..11262)
                     /locus_tag="PXD88_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280811.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            complement(11277..11636)
                     /locus_tag="PXD88_001231"
     CDS             complement(11277..11636)
                     /locus_tag="PXD88_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL6280812.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            complement(11633..11878)
                     /locus_tag="PXD88_001232"
     CDS             complement(11633..11878)
                     /locus_tag="PXD88_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL6280813.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            complement(11881..12414)
                     /locus_tag="PXD88_001233"
     CDS             complement(11881..12414)
                     /locus_tag="PXD88_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL6280814.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            complement(12500..12925)
                     /locus_tag="PXD88_001234"
     CDS             complement(12500..12925)
                     /locus_tag="PXD88_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL6280815.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            complement(12996..13211)
                     /locus_tag="PXD88_001235"
     CDS             complement(12996..13211)
                     /locus_tag="PXD88_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6280816.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            complement(13230..13622)
                     /locus_tag="PXD88_001236"
     CDS             complement(13230..13622)
                     /locus_tag="PXD88_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280817.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
     gene            complement(13748..14095)
                     /locus_tag="PXD88_001237"
     CDS             complement(13748..14095)
                     /locus_tag="PXD88_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280818.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
     gene            complement(14184..14609)
                     /locus_tag="PXD88_001238"
     CDS             complement(14184..14609)
                     /locus_tag="PXD88_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL6280819.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            complement(14593..15147)
                     /locus_tag="PXD88_001239"
     CDS             complement(14593..15147)
                     /locus_tag="PXD88_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280820.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            complement(15147..15317)
                     /locus_tag="PXD88_001240"
     CDS             complement(15147..15317)
                     /locus_tag="PXD88_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280821.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            complement(15388..15963)
                     /locus_tag="PXD88_001241"
     CDS             complement(15388..15963)
                     /locus_tag="PXD88_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL6280822.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            complement(15986..16168)
                     /locus_tag="PXD88_001242"
     CDS             complement(15986..16168)
                     /locus_tag="PXD88_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280823.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            complement(16235..16381)
                     /locus_tag="PXD88_001243"
     CDS             complement(16235..16381)
                     /locus_tag="PXD88_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL6280824.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
BASE COUNT         4368 a         4082 c         3091 g         5040 t
ORIGIN      
        1 ccgcaccaag ccctgccgca atcattgcat ttgattcggt tgctccctta taccagccta
       61 caataattcg ctcactgtta aggcttgcgg ttaaggttgt gccggtggca taagtgccac
      121 gccagcccat tacaccaata gccggtttat cttcaatcgg ggcagaaacc gattctaaat
      181 ggctacgcaa ggcaagggca ttttcatcat ctgaaaacgg cgaaataatc acgttataat
      241 gcgtaccggc aacactcgcc aacgccggag caattagggc attacgctga ccgttatcaa
      301 acgcacgagc ctcaagggtt aaacctgttg ctgtattgcg tgttgcaagc gtgatttcat
      361 tgctgatttc gccttttgct tttgaggtca gtttaagtgt cgtttcactt tccacacttg
      421 ccaccacagg gctataactc gccgcattaa tcacattaac taaacgagcc acaatcgcct
      481 gtgcttcttc gccttttgcg gctgcaactt cgtaagctgt gccggcaatc gtaatacgca
      541 ccacaccggc ataagttact gtgccggtaa aactaacttg ccctgttgct gcaatacctg
      601 cctcgtggtc ttttaagccc accaccgtta aacggattag cggattattt tggattgctt
      661 ggcgaaccat taaatgagct accgagcctt taccaaataa attttccgcc tccacatcgc
      721 taaaaatctt ttgcggagca gtaaaagcag cctcaccgtt tagcattggt gcaacaatta
      781 gcacctcttg ctcattggtc ggcaaggtgg ttactgcatc tttgttgttg tattcggtca
      841 gcacacttgg tttgcgaata ctgttcggga ttttctcaaa ttcaattttt gacattattt
      901 gccccctgtt tctttagcgg atttggtttc tttgacgaca atcaaatcgc catccgcaat
      961 gcggcgttga tagtaaaggg tgttttcaac ctctactgcc tcttgttcaa tatagtgatg
     1021 cggtcggttt tctaccggca cacgcacccc tttagcggct ttcactttta acatctaatc
     1081 accatcctta aattctgttc taaatgccgt ttcggcattg ttattcgggt caaaaatccg
     1141 attattaaag cccgataaat cgccttgcgg ttcatctagc ttgccttgat actgcttaaa
     1201 gacttgctca ttcggctcaa ccccttcggg gaatctacca tcatcaagca cattgcactc
     1261 gttgtagctg atttcaaact caatagcata agcagagagt ttctctttct tcacttccgc
     1321 attattccaa atcgtgcgga ttcgcttagg ctggataggg tggactaaac cgtctaaagt
     1381 ctggttaatc aataaggttt tcaccgctcc cagcaactga ttaaccccca cctcacgact
     1441 tgttacccca cctaaacgcc cagcagtctg atttcgcatt gagcgagtaa taaccaacac
     1501 cacaaacaca tcagtggctt gatagcgttt acctcttact cccattgatt tcgcctcgaa
     1561 cgccgagcca ccataagaga caagacaagc aggcaaacgg agaacatcta acttctcatc
     1621 gttaatttcc ccggcatacc cagcaacggc atacaccatt ttgcctaagc ccagcgttaa
     1681 acgctcaatc aaagcacgct caattttgct aatcatcgct tatcacgccc ccaaatacgg
     1741 ttgcccccgt taaaaaactg cactgtattt tcgccagtag ccgattcttc ctcattggtt
     1801 tcatcaaccg ctaacgacac tacgccctta gagatgtttt ccagctcttt taagcaaagt
     1861 ttgtagcggt tttccacctc ttcggtcatc gttactaatg atttgctggt taaatgataa
     1921 cgagccaaat cacagcaaat acgctttaaa ttttgcggta cagtctttaa tggcagacgg
     1981 taacgcccac ttaaatagcc atcaatttgg ctggaagagt ccgctaaagc tacttcaaga
     2041 gtcgcttcat caaccacgcc taccatttca cggtcggtta gctcaatgga ttcctgttcg
     2101 ccaattcgca aaacgaaatc atcaaccaac gcatacatta cgcatcgccc tcaacaacag
     2161 gtacaaactc caaataaggg tcgttggcta aggtaataat ttgttcatca ctcaaggctt
     2221 tacgagcaat ttctaccgcc gtttctttat taaaacggta gccacaacgc ccataggtgg
     2281 cttgtgggtg gatagatttg agcttaactt caaaagcaat aggatttatc aaagcaccgt
     2341 catcaggctt agtttcactt tcaggcggtt taggttgttc atccgtttta tcttcaggct
     2401 gttcattcac cttatcttca agcggtgtgt tttcgtttgt gttcaaagct tcattgtcat
     2461 ttttctttgg ttttgccatt ttgctaccct ctcaaaatgg gcgtattgct acgcccaaca
     2521 ttaaacttat tcagcaataa atggattcac taccactttt aacacacctt ttaaggtgtt
     2581 ggttgtgccg tcaattaatt ctgcttcgag taatttgcgt gcagcaaact caagcgaagg
     2641 tggcacaagc aaagtggtcg ggcgaatatt taactgctta tcgccatcgc cttttaaggt
     2701 gcgcattgca gttaatactt tttcaagggt ttcactattt aactcactat cttcaacacg
     2761 gtgaattaac tgccagaaac caaaaccggc attaccacga gcacgcacac cccataaata
     2821 ttggtctttc ataaagacgt ggtctgactc acttggatca aacttcgttt caatttcagg
     2881 tgtagtacgt tcttgccaaa ttaacggctt aatggcttgg ctatcatcta gcacatagaa
     2941 cgcaggctta ccgctggcag agcctgtggt gatattactt tgtgttttac ttgtgccagt
     3001 tccatcaaca ttctgataaa cagggtgatc ggtatcaaag aagttctgcc cgtcatagca
     3061 aagggttgtc ttaccttttt tcaacaaact aaataccaaa tcatcaggta attcagccgc
     3121 actttgtgcc gcttgtttca ccattggggt aaataagccc acttggtcat cttcaatggc
     3181 agtacgaggc acagcaacgg ttgattcaaa taatttattc tcaatcgtca ttccttgtgc
     3241 ttgcatattt ttaatttgac ggtcgcccac ccactcttgc attttcggga attgtcccag
     3301 ccaagcatag gtattagtag cggtgctgga gcttaccttc attgcaaccg ttccccattg
     3361 tggttcaagc acttttaaac cagcactaaa ttctttacga aatgcagtat caagtgcttt
     3421 taataattca gattttttaa acattacttg gattcctctg ttttatattt ttcaatgtaa
     3481 gctgcttcgc ttaaaccaag cgattttgct gctgcaattt ccgcagcaga taacgccact
     3541 ttctccgtac ctttgttcgg gtcttcaccc cccgactgcg tacttgctaa agcggggtta
     3601 ggtgttaccg ttttcaaaaa gtcggataaa gccactaaat cttgcttacc gagcttttcc
     3661 gcccacgctt tttgagccgg caataaccga ccgtcagaaa gagcggtttg aattaacgca
     3721 tcacgctctt tatcgttgat ttgctgtttt aagccgttca gctcggtttg cactgcttgc
     3781 aagtcgctta acgccacaaa cttcgccggg tcagggtgat tcactttggc agagagtgca
     3841 accacttggc ttttctcttt tgccagctcg gtataaacat cacttaacgc caccgggctg
     3901 tcgcctttgg ctttctcaag tgcggtcagt ttttcggtaa tctgctcatc ggtcgcattt
     3961 gccgacaatg caaataattt aattaagagt tctttcattt ttggattttc ctcttcgggg
     4021 gttaaaaatt tggcaaattg gctagacatc gcaaccacct cttgcagatt atgcaaggca
     4081 gggcggttag ttaaggcggc attaagtacc ttaattacca ttccgctgcc gtctgtcaaa
     4141 aacagtggcg agagatagcg ataaacgccg tctttaatct cttgggtcgc ttgtggtgtc
     4201 cacttaacat ccgcaaacaa gccttcgccc gagatatatt ccgccttggt aatccaaccc
     4261 gcagcagggt tgcctttgcc gttctcggcg atgtacaggg tctgatgctc ataatcaatc
     4321 atcagatcaa tcgcagtgtt gttaatatca tcggctaacg catagccatt ctcgtcacct
     4381 acataccaac gtcctccacg cccgtcttga gcctcaaacc aaccaaaagg gaaaagttga
     4441 atacgtccat ttgcctcttg gttgagttta aaactcaatg caatggggtt tagtttgaat
     4501 ttatgcttaa acacaaaaac acctcaaaac aaattaatga ggctaaagaa tagaagattg
     4561 agaaaaaaga gtaacgggga gcaacttcca caagttgcaa attttcagaa aaaaacaacc
     4621 gcttgtattc agcgaggaat gtaacccatt ttaaaacgct ttaaatccgt tttaaaaaat
     4681 tttaaaaaag ttggaatgat aaatcaccat aaaaaaaaca aaaacgccac agagagcgat
     4741 ttaggggcta tctgtggcga ttatcttatc gcttaatcca gcagtttttg ccagtaggct
     4801 tgcacatcgt ccaaaatatc ttgcctgtct tgcgaggtta attgtaaaaa aggtcgggct
     4861 tcaattttta ctttacgccc acgcccagcc ataccaccga attgatgaat agcagcataa
     4921 ggctcatttg tgccaacaat cgccgaatca ttattataat cagcagtaat gctgcccatt
     4981 aaattttccg tatcaactaa cggcgtgcct tgccgatgtt ttatacccag ccatttcggg
     5041 cgaccgccct catcaaaatt ggtcagtacc gccgattcca ttttgccggc aatattccgc
     5101 atcaagtctg ttttatttgc cgttttagca gcaatacggt taagcgtggc aataatttca
     5161 tcaatgccgt ggatttggat ttcaatcatt tttaaccttg caagttgatt tttaaaataa
     5221 acaggggtat attcctttta cggttattag aaaagcggtg ataatctccc tgccgcagcc
     5281 tatttgagat ggcaagtcct gctcaaatga ccgagagcgt gtgtaagtga ccgggagcct
     5341 tacctaataa ccgtattttt caacagcagc ttatccaatt ctttttgtcc aatctccctt
     5401 gttgatacca gaaataattc accaaactct tctaagtatt tcaccacaac aagaatacga
     5461 taatgctcaa agtttcgtat aaagctgaaa tttttgcctt cttgcaaaat atgattaggc
     5521 tgaaaaatta catcaggaat atttgcatac acatcaaacc caaaatcctg cccctcacgg
     5581 ctataaaact gcttaatcag tgtgtcatcc gaaagccata ccgtgccgac tttactgtcg
     5641 attaagcgtt gtgtttcctc acttaaccga ccagcagcaa atttaaagtt ttgattaagg
     5701 gcatttcgca ctttaaccat ctcatcaggc gagagttttt tcgccccatc tttggcaagt
     5761 gccacagcct cttctaactt gttaaacgcc tgcttaaatt caccaccgct catttctgct
     5821 ttggtaaatt ggtaagccag cttttcaggg tataaatcca aattcggctt ataggttaaa
     5881 cgccccacat tataatcaaa acctttatca gccaatcgca ccgtaccatc agccaattta
     5941 aagccaatgg tttcctcttg gttgcctaac ttatctttcg gtcgttttgc cttcactaaa
     6001 aacggctcgc tactgccgac ttcgtcaatc cctttacgct ttaaatcccg ctcacttaac
     6061 gcaatcacgg tacaacggca attaaagccg ttcggcggat aaaaagtcgc ccaaaacgga
     6121 tcgtcataac gataaatctt accctgtaat gcttggtgag cagggcgggt gcgttggtcg
     6181 cctaccgccg aatattgcca ataagggcga ttatccacat tatccatata ccgctgataa
     6241 cgagccgcag aataagcctg ttgcatattg gtacgataaa tcgtattcaa gcggcgaggc
     6301 gtgccgaaat gctcgccggt tttcgggtcg gcaagcagtt tgccatcaat gccacgacta
     6361 atcgtcgtgt ccatacaccc agcctttccg ttcaaattct gccgtaagcg ttttcttcca
     6421 ttcattaaag gatttcccct cacgccgtgc tttttccatc gactcataaa tatcacgggt
     6481 catttcaagg ctagtgagct tgctaatggt ggcggctcgc cccaatgcag aatcaaataa
     6541 ttcctgctta aacactttat tcgcaagcaa cttcttctgc cgtaaaaact caatcgcctg
     6601 cttaggctct agtccaatgg caaaattaac tttctgcatt cgcagcccct aataaatccg
     6661 ccaaaaataa cgcattcgct aaatagcggt cgtgttcttc actcactaaa tcagggtagg
     6721 ctgccgccaa tttttctgct gcctcatcat aagagctaca cgccattacc accgccaccg
     6781 cctttttcgt gatggggtca aattgggcgt taaaatccgg cacggaaaaa gcctcgtctg
     6841 ccaaatcatc taaggcatct tgctctttaa tgcccgtttt ggtttgggcc gacaaagcgt
     6901 gaaccttgcc cccacaaccg cattcgcaag cggtcatttt ttgcggaaaa tttgcggata
     6961 accccaccgc ttgtggcggg gcagaacgcc ctaacaccgc ttcattttct tgagcttcgg
     7021 gaataccgag tttatccatc gcccactgca ccggaatcgg cattccaata tccaccaatt
     7081 tcggcaagct ctcggcaaat aacgccaagt cggcaggctc tttggtatca aactcaaaac
     7141 tcggaatgcg ggttgggtcg atattgccaa aattaatttg cagaaacggc agaataattt
     7201 gttgggtaaa cgtctgcccc agctgtttca cgtccgacac caacaaatca cgccgcactt
     7261 cgttatgcac attgccgagt gcattggtag agcttttgcc gtctgcaccg ctggttaagg
     7321 tttgccccaa aatcaagcgg gcgatagact tctcacacca atccaccatt tgcaaaaacg
     7381 gattattgcc ggctgcaccg cctgcattag cggcgttatg caactcaata ctcatcgact
     7441 ccggcataat tccggcagcg ttgtgtccga tttccgctaa tgcacgttta agcgtttgtt
     7501 tttcgtttgg tgttgcccct gcaccgtatt taccaatgcg gataggcata ccatacagct
     7561 ccaaaaactc ggcaaagtcg tggatagagt agtgtttaaa catatacagc caagccagcg
     7621 agcggaataa attattgcgt gccgcctgtg tggagcggga tttatgcgta tgcaccaccc
     7681 agccaaattc tcgtaatggc tcaccttcgg tattttgtcg ggttttcagc aacagattgt
     7741 cgtgcttatc ccacttaaac cacgattgag gacggtggat aaaggcgttc ggataccaca
     7801 atttaccgtt aaacgcccat tcaatttcga gggcagcaaa accgtgtccc acagcgtcca
     7861 tacagtccat caccaaatct tcaaggttgc cgagctgata aaataactca tcaacctcat
     7921 cacgcagttt ttcttcctgc ggtgtggcat tgcgaggggc aacaatcgcc caatctacgc
     7981 ctaatgcggc acgcttacgg gtttggatat tggcaaaaat agagctgtcc cgctcctcaa
     8041 tatccataaa taattcgtgt tgagcggtaa tatcgccatt ctccgtatct tcaaaaatcg
     8101 ctttcatttt agcaggcgta ataaaattgc tcggatggtc ggagagtacc cgacctgtag
     8161 cggtaatttc ggctaaatcc gtctgcaatt cttgattttt aatcgggttt aaattcggtt
     8221 taatctgctt gttatgcttc tttttgctca taaattttcc ttttcagagc ttagttacgc
     8281 tcaatatagt ccccctcttt agcaaagagg ggagttacat taatgccgcc acttactgcg
     8341 atactcaccg tcaaaatcat ctacactctc ccactcaatc ggggcagagc tgctgagtgc
     8401 atttcgccat aacatttcca acgcatccgg accatcatcg tgatcggctt tcggaaaatg
     8461 gcgaagctgg ctttcaagcg tagattgcga gcggtgcaac aaaatcaaac cgttggcaat
     8521 atgcggttgc aagctctcaa tccgtaacat cttgtcactg ttcggcttgg ttgccgttgc
     8581 cggcaccggc ttaccacgct gggcagaacg cttgaccagt tccgtctgca aaaactcctg
     8641 aaattgcacc gtctccacaa accagcggtg acagttatat tgcgaatgca gtctaatcac
     8701 gtcctcaata attaaatccg gcaatcgttt tttgatttgt gcctcaacaa catagagctt
     8761 gccactctca cgatgatagc caccgaccaa aattgcagat gggtcacggc ttgccccagc
     8821 tttccccatt gaggggtcta acgccccgaa ataaatcagg tcatcaggca gttccgtcca
     8881 atactggata ctgttggcaa aaatcgcatc atcacccgag acagggtcat tttgatactc
     8941 ggagtcaaat gctgagtgcc catcactagc acggattttc atcaagtaga ggatagggcg
     9001 agctaaccaa gagactaacg ctcctttatc catttctgct ttatgctgtt gataaaagag
     9061 atcagacata gtgtcatcgt ccccttcttc cgagaggtat atattttccc attcgtccca
     9121 taacgccata ttgccgggaa agcgtaaaat ggctttaaaa cgaactcgcc gccaaccttt
     9181 tgtatttaaa atacggctaa gcacactgtc ataatgtaga attgtgccga catagataac
     9241 atcaaacttt tcacctgcag caccaagttt taaaactgct tttaaaaccc agttatgcaa
     9301 tttattacgc tgtgcaggtg tttctacgct ttcatcattc tcaatatcat caagtactac
     9361 taaatccgga cgataagctc cgtggcgacg accacgcaat ttttgcccag cccccacagc
     9421 ttcaactttt tgttttttag ccgtcataat gacacctgca cgccaaacct tgccttgtgc
     9481 aacctcgggg aaatcaattc ttaaacgagg gttagattca atttccactt taatagcttc
     9541 aagcatactg tatgcctgtt ctttggtgtc catcgcaata atgatgtatc tttttaaatc
     9601 acggactaaa caccacagcg ggaataattg cgtacaaatc gttgattttg cctcgccacg
     9661 aggggctgca atcgcttggc ggactgactt agaaagatca cttaccgaaa gcggtaaatt
     9721 ctcaaagaga taatgatgca actgtgattt atgttcagac cgcacatagt gtggaaaata
     9781 agcctgcaca aaatactcaa agccgtgaac agggtctaaa accttttgac ggcgttcgct
     9841 aatggcttgt ggtttatcgt cccaaccctc aaaactcgct tcgatatttt gttgtaactg
     9901 tcgccgtaat tcttccagtt ctttttcaaa ttctttgatt ttcataaatt acatacaagc
     9961 tgcgataagc aacaaccagc cccaaccgtc tgtaccgttg agcattagtt ttattgctcc
    10021 gaaaatacaa gcaagttgga caatccaacg gaaagagtaa tgcttatgca ctacagtttg
    10081 ttttttctta gccattactt aaactccttt ttgaattgca cttctagctc atctaacatt
    10141 tctaaaaagt caggcaataa atgcggtttc ttggttttga cgatattcgc catcatctca
    10201 atcgcacgca tagcggttgc cattgcactt gtttcaggca atagtttctt gctcgatgcc
    10261 gtcatcttcg caaacgaatc agccagagca gctaatgcct caaccttagc tgcggttggc
    10321 atttcggtgt tttcctcaag ctccgtcatc aacgtgcggt acttaattaa aaaaccggct
    10381 aacaagcctt gagcgatatt ctcaatacca ccgcttgcca tcgcttgcac atcacgagct
    10441 ttttcccagt tatcaccgtt cttttcagca gccgctttcc aacgccgtgc cgtgccgaat
    10501 gatacccctg cacgttctgc tgccatttcg aggcttaaac ggtcaaacac ataggcttgc
    10561 cgaaccgctt tttgtacttc aacatcgtgt gccatacgcc ctctacattc caaatttcag
    10621 gcgtaacaac tcaaaaccca cagcaacaat gccaccaccc aagccaccgg caactacagc
    10681 atcacggcgg tttttacgtg ccatttcatt cactaaacga ttagtcgctt ggatttcacg
    10741 gtgtaagcgt tcgatttctt cgttttgttt atccacctta tcgtttagct catttaatcc
    10801 acctaaaatc aggtctaatt tttccgaatc ggtttgcttt tgttttttac ggctcattac
    10861 ttatccgcct ttttatcaag tttttggttt acttctttga gcgagtctaa aatatcgtcc
    10921 agcttttcct taatccctct attcacttcg tgggcaagct ctttggattg atatttgctc
    10981 tccatttctg cttttagctc ttttaccgtt tgctcattgc ggttgatacg atcaaatatg
    11041 accttgccta caaacgccac taacggagca actacaaaag agatcagcat ctgaaacagt
    11101 ttttcatcaa tcataacgcc cccttttggc tcgcccgacc gggtgttgat taccttgtgc
    11161 caccgccgca cgcaccacgt tatgcaattc tgcaaggtca ggacggcggc gataaaaacg
    11221 ccattgttgc caacgctgtc tgagtttttt aattaacttc attctggcaa acttcctcat
    11281 aggtcagatt gtgtgcaagc acttggcgtt tcgtttccat tgtgtccgca cggctcgggt
    11341 aaatcagacc gaacgccgtg caacccgttg tcgtcacgga agtaaccgtg ttggtgcaac
    11401 tgctcatcaa tggcactagg ctgaatacgg cgagtttcac taacgtgttt ttgctgaatt
    11461 ttggcatttt taacctctgc atttttttgt tgaatttcga ccgcttgttg ctgcttttcc
    11521 gcctttaatg tagcggtaag tttccgctcc tgctttaatt gccagctttt ataaaaggca
    11581 taggctaaaa ttgtgcttac tacaccaacc acacctgcaa tttgttgagt aatcattctt
    11641 cagcctccct tgagcgttct ttttgtttta acgcacttac cacccctttt gtggctgggc
    11701 tacccaatac acaaatacca gcataagcaa accaccagtc ggaaataaac ggcttatcgt
    11761 aaaggtaggc gtgaattaaa atgcccgata acactaacca gctcataaac tgaataaagc
    11821 cagtggtgct ggctgtgccg tctttattgg taattaaatc aagtaaaaat tgcttcacga
    11881 ttattcctcc accgtgtctt tggcaaaata acgcaaatta cccgccattc ggttaatcca
    11941 acctctacca aaacggtcaa agtgtttgag tttggtgtaa aactcaaggc gttctgcctg
    12001 aaataacaag cccacatccg caaccgaata acgctcaatc gcagccaaag tcactttacc
    12061 gataatgccg tcatcagcca cacctaccgc tcgctgtaac attcggctag cattgcccga
    12121 accgtggttt acacacgcat ctaaaaactg aaaagccaac tcaggcggga actgctcaca
    12181 gttataacgt tgccaaaagg ctttgaggta aatagttttc gcatccgcac ggctcattgc
    12241 acgcatagag ccggtatagc cattcgcacg ggcagtatgg atagtgatac cccaattcgt
    12301 ttcgccaccg gggtctttcg ggtcgttcac ataaccgccc tcgtgtccga taagacggtc
    12361 aaatgcaaga ttaaagtcag caatagttgc cttgtttttg ataggttcag tcataaaaaa
    12421 agcctcttta aattcaatga tgatttaaag agactttaat gatttagagc aacggggagc
    12481 aggcgaaagg attccacact taaaacaagg tagcttgcga aacggtatgc ttacgctgat
    12541 aatatcgtac tgcctcccac gcaacacgat cacacacgct gtatttaggg caaatttgca
    12601 taatcgcaag cctgccactt agccctcctt gctcggttaa ttgacaataa tcggcataaa
    12661 tctgctgatt acgcaacatt cttaatgcgg tttcacaacg tggcaaatag acctcgcaag
    12721 ctcccatata agcctgtaat ttcactgcat catcttgccc taatacctct ttgagcttat
    12781 taaaatagag ttttccgtta gaaaattgga atgaaaagcc accaaaggct ttgattagct
    12841 tttcagttgc cggcaaacca atcacgccca caatttcttt caccgtttcc ggcaaataat
    12901 gttcgacact ttcaaattca gacataaaaa atccccttga ataatttcca cgaaagccat
    12961 tatccaaggg ggttattcaa atctgtaata cttacttaaa aatttttttg caaatttttt
    13021 aaaagctcag cccattttgt gtacggcata tctgatctag ctgcggttga tgacagttct
    13081 gtctcccacc gcattactat tctttgcccg acccctaata tgttagctac ctctgtttgt
    13141 gtgaggttat ggtgctttct tagcattttt aagttgcttg gtgtgtatcc aaactctggg
    13201 ttttcaatca ttcacctccc tccattaaac tagctattaa atacagcaac aacgataggg
    13261 tttctaataa tgctctcgcc tttatcttct ccgcctcttg cactatcgcc tttaactagg
    13321 ataaagtttt gcccacagta tgactggaaa cctttaaatt caacatcaaa ttttttgcaa
    13381 gcatcacgac ctagattttt aatagcattt aacaaacctg cttcatctgc attttggatt
    13441 cccattgtac aaatgccgtc taattcttca tctgtttttt caccatcgac ccaaacaaaa
    13501 gaatttccta attcatcgcc aacttgatgc acatctgtag ttgctcttaa accataaaca
    13561 gcgaagcagt cttcatcggc atcgtttagt aaagcattta aaagtttttg gtaatctgtc
    13621 attttaattt ctcctgtttg gctatgggtg cattatagta atataattac ctattgcaag
    13681 tgatttttcg tttttttctt aaattttttt atgtaaataa aaaagaccgc ttgaaagcgg
    13741 tctaaattta ttttttcttg gttgcagaaa tggattttgc aatggtaaag gcagtttccc
    13801 aagcctgttg attatctgta acctcaattt tacggcaagc aatcgcctcg ttgttaaagt
    13861 cagtcatatc aaccttgtcc gaattaacaa gcaaaataac acggcgtaaa gcacaagcag
    13921 caataggatt gtgatcgtgc ccaaacgaac cagtttccat tccgtaagct acatttctta
    13981 actgttgata atcaccactt acaagagcat ttgctgtttc ttgttcagct ttttctgtca
    14041 ttgctattgc tggtaacgac aataagcata aggttgttaa tagcagttct ttcattttaa
    14101 atacctttaa aagttgatta aaaaacacct aaaatctacc acaaaaaagc ccactattta
    14161 aagtgggcta tgcaataaat ttattattta acactcattc cgtgcctatg gttataactc
    14221 gccaatatct gcactaattt atgcaactga tcatctgtca gccattgcac ccgctcaata
    14281 ccaaacgagc gtttggcaat ggcgtgggcg taatcccacg gcttttggct ttgatacagc
    14341 aacgccccga ttttatttat caacccttgc cggtgagggg cggttttact tgctgttggg
    14401 cgtttaccgt attttttcga cttcaccaca aaccctttag ctttcattgt ttgcagtacg
    14461 gtcattaatt cgctatcggt catcattgag cagcttggtt tatccaccgc ctctaacaac
    14521 agcattttat aggcgttatc atccagtttt agctcatttt tgccgatatg gattttctgt
    14581 atcatctgct ttctagtttg cggttgcatt ttgcttttcc tcctgccatt tcagccaaat
    14641 ttgataactt tcggtgttct taacggcttc cagttgcccc atttgcttca ttcgttccac
    14701 atacatcacg gcatcgtgtt tcttttggtc tgcttgccgt tgctgttgct caaggctact
    14761 cactgctttc gcttcacttc ttactactgc aaattgtggc ttcacgcttt catatacttt
    14821 cttcaagtaa ttatgatttg ccagcggctc acatctgcca gtttcacgcc gattccgtct
    14881 tacttgttcc accgtatcca ttaaggcttt ttctaacaca ttagagggag ggtaaagctc
    14941 caataaactc tgcacaattt tcaaggctcg gctattggca aggctgtttt tctgtggctt
    15001 aaataaccct aaatacgcca ccaccgcacg cccacaattc ccaccgatat tgactatcgt
    15061 atttaacaac tcacgccctg catcatcttc aatcaacgcc tcaaacgaga tgtcggaatg
    15121 gcaaatcggg catttgcata gtttcatcat tctgttcctt cttctattgt ttcgagatca
    15181 acccaataag ttcgactatc agggtatggg ttatgccaag ttgctggagt tagctcgcaa
    15241 ataactaatt gttgtaacac aatctctccc gatttctttt tacataaccg atattcagga
    15301 attttttgat attccatttt atgctcctat aaaacacatt attcagccca cttaaatagg
    15361 ggttaaatgg gctgtaaatg ggttttatta cttcccctgt attgctaaaa actcactttc
    15421 tttaatctca accaatccct ctgcaatctc aggaaatggt tcatcatttt tatcaatagg
    15481 cattggcatt tcaaccagta aggtgttttc acaaatgcct gctacggcta aataacttct
    15541 acctgatgtt ggggaataac taaaatcact tacaaaataa agcatattca aacgttttaa
    15601 gatatagggc gaaaaatcac gatgtttctc ataaatttca ttaattgctt taaaatcttc
    15661 tgcaagttct ttcccttttt cgtaacgttt atcaggtttg acgaggtaaa actcatcatt
    15721 aaatttaccg accttgaacc ctttaacatc taaaacttgg ctaatattgg ttgctttaca
    15781 agcaatccct ataactattc tatgaaacca gcctgaccta ctaattaatc catcattgaa
    15841 aggatatttt tctaaaatag cattgagctt atccttgcgt tcttctttag atacttgata
    15901 atctgcataa atgcttttta gtggctcttg ggttatatcc cctttaaaaa atctaaattt
    15961 cattcttaac tccttactgg ggtggttaat gtttccgatt tgccgttaat aacttcaaat
    16021 gcacctttgg caacaaatcc tgcaccgtgc cgagataaac accactgcga ataaagtcac
    16081 tctgttttaa atatttttgt gcctgaataa tctgcattaa cgcctcgttt aattggctgt
    16141 taagttcgtt tttctcttgt tcggtcatca tctcctccta aaacggtttc ttatgcatac
    16201 gtttacaaaa taccgctcgt tgccccgccc agtctcagtt agcggtcttt tttgctgata
    16261 attttgcaac tttccaatgg tcttgggctt ctgcataatt gcctttacgt tcggcttccg
    16321 ctgctttctc ggcataatgt ttgtagcggt caaactcggt cgccttttgt tctgttttca
    16381 ttttttcctc ctgtggttaa aacactttat aaatgccctt ctatcttgtc cccctctttg
    16441 aaaaagaggg gctaggggag atttttaaag ggcattgaaa aggtttttta actaagactt
    16501 tctttttaac tgatttaaaa tatgcaaatg atttaataac gatgcatatt ctttatcatc
    16561 aaagtccatc attattaatt t
//
LOCUS       DANLXK010000045        16540 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.045, whole genome shotgun sequence.
ACCESSION   DANLXK010000045 DANLXK010000000
VERSION     DANLXK010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16540
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(117..632)
                     /locus_tag="PXD88_001244"
     CDS             complement(117..632)
                     /locus_tag="PXD88_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6280825.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
     gene            787..3615
                     /gene="uvrA"
                     /locus_tag="PXD88_001245"
     CDS             787..3615
                     /gene="uvrA"
                     /locus_tag="PXD88_001245"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL6280826.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            complement(3707..5440)
                     /gene="dauA"
                     /locus_tag="PXD88_001246"
     CDS             complement(3707..5440)
                     /gene="dauA"
                     /locus_tag="PXD88_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL6280827.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            5682..6614
                     /locus_tag="PXD88_001247"
     CDS             5682..6614
                     /locus_tag="PXD88_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6280828.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            6616..7413
                     /locus_tag="PXD88_001248"
     CDS             6616..7413
                     /locus_tag="PXD88_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280829.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            7500..7721
                     /locus_tag="PXD88_001249"
     CDS             7500..7721
                     /locus_tag="PXD88_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280830.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            7904..9829
                     /locus_tag="PXD88_001250"
     CDS             7904..9829
                     /locus_tag="PXD88_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL6280831.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            9903..10268
                     /locus_tag="PXD88_001251"
     CDS             9903..10268
                     /locus_tag="PXD88_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL6280832.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            10270..10956
                     /locus_tag="PXD88_001252"
     CDS             10270..10956
                     /locus_tag="PXD88_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL6280833.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            11040..12803
                     /gene="msbA"
                     /locus_tag="PXD88_001253"
     CDS             11040..12803
                     /gene="msbA"
                     /locus_tag="PXD88_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL6280834.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            12892..13524
                     /gene="lolB"
                     /locus_tag="PXD88_001254"
     CDS             12892..13524
                     /gene="lolB"
                     /locus_tag="PXD88_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL6280835.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            13512..14366
                     /gene="ispE"
                     /locus_tag="PXD88_001255"
     CDS             13512..14366
                     /gene="ispE"
                     /locus_tag="PXD88_001255"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL6280836.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            14392..15342
                     /locus_tag="PXD88_001256"
     CDS             14392..15342
                     /locus_tag="PXD88_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL6280837.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            15420..16430
                     /gene="pyrD"
                     /locus_tag="PXD88_001257"
     CDS             15420..16430
                     /gene="pyrD"
                     /locus_tag="PXD88_001257"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL6280838.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
BASE COUNT         4757 a         3128 c         3828 g         4827 t
ORIGIN      
        1 acttggaagt gttccctatt attttgagta aggtaggggc gctttatatg agtagctttt
       61 tatttcatcg aaatgcggtg tatggaaccc atgagctact taagtcaata ctttgattag
      121 aacggaatat catcatcaaa attgttcatt gccggctcag gctgtggtgc cggtttagat
      181 tgcggtgcag cactttgggt ttggttgtaa ccataattgc tgttgccttg attgtagcta
      241 ttacccgcag gagcagaatt tccccaaccg ccttgctgac cgcccatatc attaccttga
      301 cggctgccga gcatttgtag cacatcgcct tgaatttcgg tggtgtaacg atcttgcccg
      361 ttttggtctt gccatttacg ggtttttaaa cgtccttcta cgtaaacttg agagccttta
      421 cgtaaatatt gcccgcatac ttctgcttga cggcggtaga atacaatacg atgccactcg
      481 gttacttcac ggcgtgcacc ggtgttttta tccgtccagc tttctgaggt tgccacacta
      541 atatttgcaa ccgcttcgcc atttggcatt gtacgcattt cagggtcgtt acctaaatta
      601 ccgacaataa ttactttatt gataccagcc ataaaatcct ctgtttgata aattaaacta
      661 aaatttgcta agtattctac ctgaaaatcc aaaagatgaa caccaaaaaa ctgatatttt
      721 gtacagtttt attaaaatat gcgataatga tcgaaaattg agaaaatagc actggacatt
      781 aaaaatatgc aacatatcga tattcgtgga gcaagaacac acaacttaaa aaacatcaat
      841 ttaaccttgc cgagagataa attcattgta attaccgggc tttccggctc gggcaaatcg
      901 tctctggcgt ttgatacgct ctatgcggaa ggacaacgcc gttatgtaga atcactgtct
      961 gcatacgccc gccagtttct ctccttaatg gaaaagcctg atgtggatca tattgaaggg
     1021 ctttcccctg cgatttcgat tgagcaaaaa tcaacctctc acaacccacg ttcgaccgta
     1081 ggaacggtaa cggaaattca cgactattta cgtttattgt ttgctcgagt gggcgagcct
     1141 cgttgccctg accacgatgt gccattggct gctcaaacta tttcgcagat ggtggatcga
     1201 gtattggaag aaccggaagg aaaacggttg atgctacttg cccctgtggt gaaagagcgt
     1261 aaaggcgaac acgtaaaatt attggaaaat ttgaccgcta gtggctattt gcgggctaga
     1321 attgacggtg aaatttgcga tttatccgac ccaccggcat tagaattaca gaaaaaacac
     1381 accattgaag tggtggtgga tcgctttaaa gtaagggctg atctagccac ccgtttggcg
     1441 gaatcttttg aaacagcgtt agatttatcc ggctctaccg caattattgc agatatggac
     1501 gacccaaatg ccgaagaaat tgtgttttcg tccagctttg cttgtccgca ttgtggttac
     1561 tctttacacg aattagaacc acgccttttc tcgtttaaca acccggcagg tgcttgcccg
     1621 acttgtgatg gtttgggcgt tgagcagttt tttgatgcca aaaaagtagt gcaaaatgaa
     1681 gaggtttcat tagccgccgg tgcgatcaaa ggctgggatc gccgcagttt ctactatttt
     1741 ggcttattaa aagccgttgc cgagcattat ggctttgatt tagaaacccc attcgggcag
     1801 ctaccgaaaa aatatcaaaa cattatttta aacggcacta aagaagagat tgagtttgtt
     1861 tatgtcaatg accgaggcga taaggtcaaa cgtaaacacg cttttgaagg ggtgctgaat
     1921 aatatggctc gccgctataa agaaaccgaa tcaaactcgg tgcgtgaaga gttggcgaag
     1981 tatattaata atcgtccttg tatggattgc gaaggctcac ggttacgccg tgaagcccgt
     2041 tatgtattct tagataaaac caatttgccg atggtttcgg aaaaaagtat cggcgaggca
     2101 ttaacctttt ttgaagagct gaaattagcc ggtcagaaag aaaaaattgc tgagaaaatc
     2161 ctcaaagaaa ttcgtgaacg gctacagttt ttagtgaatg tcggcttgaa ttatctttct
     2221 ctttcccgct cggcagaaac cctttcaggt ggcgaggctc agcggattcg ccttgccagc
     2281 caaattggtg cgggtttagt aggggtaatg tatgtgctgg atgagccttc catcggcttg
     2341 caccaacgag acaatgaacg cctactgaat actttggtgc atttacgcaa tttaggcaat
     2401 accgtgattg tggttgaaca cgatgaagat gcgatccgag ccgcagatca tatcgtggat
     2461 ataggcccgg gtgccggtgt acacggtggg caagttatcg cacaaggtac ggcagctgaa
     2521 attatgcaaa ttgaggaatc tattaccgga caattcctct caggcaagca aaaaattgag
     2581 attccggctc agcgtgtgcc ttatgagcca actaaattgc tcaccttatc gggagcaagt
     2641 ggtaacaact tgaaaaaagt gaaattagag attccggttg gtttatttac ttgtatcacg
     2701 ggtgtatcag gttcgggcaa atcaacttta gttaatgaca cactattccc tctggcacag
     2761 aatgcgttaa accgagcgga aaacagcgat gttgctcctt atgaatcgat tgacggctta
     2821 tcgcattttg acaaggtaat tgatattgac caaagcccga ttgggagaac tcctcgctca
     2881 aatccggcaa cttacaccgg attatttacg ccaattcgtg agatttttgc cggcacgcaa
     2941 gaagctcgag ccagagggta taacgtaggg cggtttagct ttaatgtgcg gggcggacgt
     3001 tgcgaagcct gtcaaggtga cggcgtgatt aaagttgaaa tgcacttctt gcctgatgtg
     3061 tatgtgcctt gcgatcactg taaaggcaaa cgctataacc gtgaaacctt ggaaattcgc
     3121 tataaaggca aaactattca ccaagtgtta gagatgacgg tggaagaggc gagagaattt
     3181 tttgccccta tgccgatgat tgcccgcaag ttgcaaacct tgatggacgt ggggttatct
     3241 tatatccgtt tagggcaatc ttctactacg ctctcaggcg gtgaagccca acgggtgaaa
     3301 ttggcgaccg agctttccaa acgagacacc ggcaaaacgc tctatatttt agatgaaccg
     3361 accaccggct tgcattttgc cgatattaaa cagttactcg gcgtgctaca tcgcctgcgt
     3421 gatcaaggca atacgattgt ggtgatcgaa cataatttag atgtgattaa aaccgcagac
     3481 tggattgtcg atcttggccc tgaaggtggc agtggcggcg gtgaaattat tgctaccggc
     3541 acaccggaag aagtggcaaa agacaaacgt tctcacaccg cacgcttctt aaaagagatt
     3601 ttggctaaag gctaacgttc aacacaagcg gtcatatttt cggaaaatgt tgcaatttgc
     3661 aaaaagttgg aaaatatgac cgcttgtttt atatccggag ttattcctag ttagcctgtc
     3721 tgattttgtc gaaggcagat tcaagatcgc tactgaattg aatttgcggg atttcgttta
     3781 ccgttttttg tgagcggact agcattctca tcggctgaaa ttgcacatta cagagatgaa
     3841 gttgttgatg tggcaacata tgctgtacaa agcgggttag ggcgtgaatg ccaccagcat
     3901 ctaatactgt aacggcatcg cattgcagca caatatgttt aatttggtga tcggtatgta
     3961 cggttttatt gtgcagatcg gcaaagagat tatcggcggc agcaaaaaat aacggaccgc
     4021 tgatccgata aaccaacaca tcgttcaaat cggttgggtg agccatttca aaggatttag
     4081 tcatttctgc aatagtacgg ataaatagca ggcttgccag taacacccct accgtaatgg
     4141 caattaccat atcaaataat accgtgaggg taatgcaagt cagtaaaacc gcaatttcat
     4201 ttttacctga acggcgggta agttgaatga tttgtggaat atctgccata ttccaagcta
     4261 ctaccaataa tagtgcagcc attgaggaaa gaggcaaata ggaaagtgct ttagccaaaa
     4321 agagtagggc aaataaaacc aacaaggcgt gaaccacact agaaatgggg gaaactgccc
     4381 cggaacgaac attggcagcc gatctcgcaa tcgctgctgt ggcggtaatt ccccctaaaa
     4441 atggcgaggc aatattacct aagccttggg ctaatagttc gttgttagag tggtgcttgg
     4501 tatctgtcat attatcgcac actaccgcac ataataacga ttcgatagcc ccaagcattg
     4561 ccattgaaaa ggcagccggt aataaggctt gaatggtggt taagttccaa tctatccgat
     4621 tcccctctgc attcgggaga ttccaaggta acacaaattc aggtaatacg cttgggatac
     4681 catacccagt ggtgccgtca gagagcgtgt agtggaatgc tgagccgata gtggcaacgt
     4741 tttgtccgaa atgaatcagc agtaatgata acagcgtgcc gataaagacg gcgggtaaat
     4801 gcccgggaat aggcaaccgt agcttgtgcc aacgagttaa aaccaacaat gttacgacac
     4861 ccactaaggt gtcagcccaa tttatggttg gcaatgctga aaaaatagcc tctagcttgc
     4921 caagatagtg ttcaggcatt ttttcaatgc ttaagcccag aaaatctttg atttgcaagg
     4981 tggcgatcac aataccgatg ccacaggtaa aacccagtgt gacaggtaga ggaatgtatt
     5041 caattaagcg tcctaatcgg agtaacgcca tcaatactaa aattcctccg gaaagcattg
     5101 ttgccatgag taatccactt aagccaaact gctgcgtgac ggggtataga atcaccacaa
     5161 aagcggctgt tgggcctgaa atattaaatc ttgaaccgcc tgttagggca atcacaatcc
     5221 cggcaacaat cgccgtatat aaaccgtgct gtggtggcac accgctggca atcgccaacg
     5281 ccatagataa cggaatagca ataacgccaa cggttaagcc tgaaataata tctctgatta
     5341 aatgttgttt accataacct gcattgagag catcttttaa tgcactaaaa ggcttgacgg
     5401 caagaaaagc atttttagtt aaaaaccatt tatttaacat agaatgttcg agtgaagaga
     5461 atgtttcgct tattttactg caatgaataa aattaaattt gagctaacgc aagaaaaagc
     5521 aggaaagacg aaatatgttg gagacaagcg gttgttttag gcgaaaaatt tgcaaataca
     5581 aataattagc tgattttatt ttgaaaatag cgtaaaatgc cactttaatt tgtactacta
     5641 tagtagtgca tttgtgtgat ttcattaact ataataaaca aatggacagt cttattcatt
     5701 ttttgagtgc ctttttaact aatatcactt ggattggggc gttagagctg gggttaattt
     5761 attcccttgt tgcccttggg gtattaattt cttataaaat tctggatttt ccggatctga
     5821 ccgcagacgg cagtttccct ttaggagggg cggtgtgtgt gatcagcatt ttgaatcaag
     5881 ttgatccttg gctggcaact ttatacggca cgcttgccgg agcagtagcc ggtatggtta
     5941 ctgcaagttt gcatatcggc tttaaaatcg aaaaattgct tgccagtatt ttaatgatga
     6001 tcgcactcta ttcgattaat ctacgcatta tgggaatgcc gaatattgct attttaggcg
     6061 aaaccacgat ttacgatgta atgccgattg aaagcgatct acagttagcc ttagtacgat
     6121 tagtgatggc attgctggtt gttattatcg taaaaggttt gtttgacctc ttttttgcga
     6181 ccgaaatcgg tttggctgtg cgggcaaccg gtactaatag tcgaatggcg aaagcacagg
     6241 gtattgcgat taataaaatg acgattttag ggatggcgat ttctaatgcg ttaattgcct
     6301 taggtggtgc tttgtatgtg caaagcaacg gtggtgtaga tatttcgatt ggggtaggaa
     6361 ctatcgtgat tggcttggcg gcggtaatta tcggggaagc aattttttcg gtaaaacgga
     6421 ttatttggct tacctttgcg gtgattattg gctcaattct ttatcgtttc ttcatcgcac
     6481 tagcattaaa taacgaaact ttaaacggca ttggctttgg cccgcaagat ctgaatttaa
     6541 ttacggcgtt attggtggtg attgtattag cggttcctcg aattaaacac aaattgctcg
     6601 gtaagcgagg ttaatatgat tgaactcaat aacttattta ttaccttcaa caaagggaca
     6661 gcaattgaga accctgtgct gagaggctta tccctaaaag ttgagcaagg cgaatttgtg
     6721 tcggtaattg gtagcaatgg ggcgggtaaa tctaccttat taaatgcgat cagtggtgat
     6781 tgtgcggtgg actccggtga gattttaatt caaggaaata aggtaaacca atccaccact
     6841 tggcaacggg caaatcaagt cgcccgagtt ttccaagacc cgatggctgg cacttgtgaa
     6901 agtttaacga ttgaagaaaa tatggcactg gcttaccaac gtggacgtaa acgtgggttg
     6961 ggctttgcga tcaaacgcca aatgcgagag ttattcaaag acaaacttgc tttgttaggg
     7021 ctaggtttgg aaaatcggct tactgatcaa atggggcgtt tatcaggcgg gcaacgccaa
     7081 gcggtgagct tgctgatggc atcacttcag ccgtctaata tcttattgtt agatgaacac
     7141 accgcggcac tggatccgaa aaccaccgat tttgtgcttg aacttaccaa taaaattgta
     7201 agagaacaga aattaaccac gctaatggta acgcattcaa tgcggcaagc ccttgactat
     7261 ggcgatagaa ccgtgatgtt acaccaaggg caagtggcgt ttgatgtttc gggcgagcaa
     7321 cggcaaaaaa tggacgtgcc ggatctgtta caacttttcc aacaaagtcg ccacgagcag
     7381 ttgagtgacg atggattatt actcggcaat taattttgcg atctgcatcg aaaaaatgaa
     7441 tttctccttt tgtttttggc tgtcaaattt taaataataa gcccaaaagg aggtattcaa
     7501 tgttaagcat tttcaaaaca ccggtagaga aagaaacgct agacgattgg gctaaaattt
     7561 cggttgatgt agcgaaagtt gcgattttgg caattcctgt tatacttttt ggcaaagaac
     7621 caacgttgat taaattgact aacttagcat tattggtatt gagtatttat gtttttttga
     7681 cgcttgggcg aaaattacgg cagctaaagg aggtgttgtg atggaactag gctggaattt
     7741 aaccataggt ttgctaattt taaacgtctt tgcgtttgct tggctttata ttattaaccg
     7801 gatttctaaa gaacaattat ccaaaaatca ataatattta atttttcaca agcggttgtt
     7861 tttgcaaaat attttgtaaa ttcgaccgct tgcctgtttt taaatgacaa aatacgacga
     7921 taaaattcag catgcattta gcgaaaatgg gttgctcagc caaaatatca gtggatttcg
     7981 accacgccaa gcacagcttg aaatggctca agtggtcgca aaagcagtaa aatttgcgac
     8041 acctgttgtg gtagaggcgg gaaccggcac aggcaaaacc tttgcttatc ttgtgccggc
     8101 actactttca ggcaagaaaa ctattctttc gacaggttct aaaaacctgc aagatcaact
     8161 ttttaatcga gatcttccca ctattcaaaa agccctgaaa tacaaaggca aaattgcgtt
     8221 actcaaaggg cgtgcgaact atttgtgttt agagcgttta gatcaagtga ccgcaatggg
     8281 cgtacttggg gataaatccg ttcttaccga tttaaaaaaa gtcagtaaat ggcaaaatgc
     8341 cactaaaaca ggggatttaa gtgaatgtat taccattgcc gaagatagcc cgattctacc
     8401 gcagttagtt agcaccaccg agagttgctt aggctcggac tgcccgcatt ttaaagattg
     8461 ttatgtggta caagcccgcc gtaaagcgat ggaggcagac gtagtggtgg taaaccatca
     8521 cctattctgt gctgatatgg cagtaaaaaa gaccggtttt ggtgagttga tccctgaagc
     8581 tgagctggtg atctttgatg aagctcacca actgccggat attgccagcc aatattttgg
     8641 gcaatcgctt tcttcccgcc agttatttga tatttgtaag gataccaata ttgtttaccg
     8701 cactgaactc aaagatctgt ctcaattagg caaagcggct gatcacttga cgaaagtagt
     8761 gcaagatttc cgattattga tgggcggaga agggcagatt cgaggcaatt tgcgagagtt
     8821 atttcgtgat aaaaaagtgg tcgatggctt ggtaaaagtg gctgaaaata ttgatttttt
     8881 aagtgaagtg gcgaaaaaat cgctggggcg gtcggaaacg ttggataaaa ttttcgagcg
     8941 gttagcagaa gttaaggttc aacttaaaaa attaatggat actagtgtga caggctattg
     9001 ttactggtat gaggcgaatg gacgatcctt tgggctgcat attacgccgc ttatggtggc
     9061 agataaattt ggtgaacagt tgaagaacca gcaaattggt tgggtgttta cctcagccac
     9121 actcgaagtt gggggcaaat tcgatcattt ttgtcaacgg ctgggcatcg aaaatgcgga
     9181 gcagttggtg ttacaaagtc cgtttgatta ccaacatcaa tctttactct gtgtgccccg
     9241 ctacttgccg gataccaata aatccaatac tttaactgct ctcgggcaat tattaaaacc
     9301 ggtgattgag gcgaataaag ggcgttgttt cttgctttgt acttcctatt atatgatgcg
     9361 aggtttagcc gactttttac gcgaacacag ttcgctgaat gtgttattgc aaggcgaaac
     9421 cagcaaaagc cgtttattgg aaaaatttgt gaaagaagat cacagcgtgt tggtggcgac
     9481 ccaaagtttt tgggagggga ttgatgtgcg aggcgatgat ttatcgttgg tgattattga
     9541 taaattgccg ttcacttcac cggacgaacc attactcaaa gcccgaatgg aagattgtaa
     9601 gatacagggc ggtgatccgt ttaacgatat tcaaattccc gaagcggtga ttaccctcaa
     9661 acaaggtgta gggcgtttaa ttcgtgatgt gaccgataga ggtgtagtga ttatttgtga
     9721 ttcccgtttg gtgatgcgaa attatgggca aactttcttg aaaagtttac cgccgtctag
     9781 acgcactaga gatttgggga atgttattca atttttgaaa caaaaatagg gttacaagcg
     9841 gtcagatttc tgcagatttt tgcaaaaaaa cggataaaaa taaccgcttg ttgaggagtt
     9901 atatgttgtc tacattgctg cgtatggttg cttctttggc attgttattt gtgatgcttt
     9961 atttaggcaa gttaatcgtt tatctattcc ccatcgggat cccggatagt attttaggta
    10021 tgcttatctt attcggctgc ttggttatcg gcattgttaa agtggaatgg gtgataccga
    10081 gcgcgaaacc gctcacacgt tatataacac tatttttcct tccgatttgt gtcgaactca
    10141 tcgaacatct tgagctgtta cgccaaaatc tgaacacttt tgtattagca acggcattaa
    10201 gcaccttagt ttctgtggtc gcgattggcg tgtttgcaca gtggattttt cattacaaga
    10261 gagggtaaaa tgagctatct ttacactgtg ttgacggtaa tcatgtttat tgccggtttg
    10321 aaaatcagcc aaaaactcaa gagcagtttt ctgaaccctt tcttaattgc actcgctttg
    10381 ctaattggtg tattactgat ttttaatatc ccttaccaag actattatca aggtaattcc
    10441 cccttgaata acttacttgg cgtttctgtt gtggcacttg cttacccttt ttatgaacaa
    10501 ttaccccata tccgtaaaaa atggcgacag attgtcgtga ttttgctgtt tagtaccatc
    10561 attacgatga taaccgggct tgggttttca ttattatttg gggcaagcca agagatctta
    10621 gccgccattt tgcctaaatc ggtatcaatg ccaatggcaa ttattattac gaatgaaatt
    10681 aatggaaatg ttgcaatcgc agcggttggg gtgatgatcg caggcttagt gggatctatt
    10741 ttaggcttta cgcttctgcg cctggcaaaa gtaagaaatg tgatggtgat tgggttaagt
    10801 atgggagctg cttcccacgc attaggcacg gcaagatgct tagagcatag tatgaaagcc
    10861 ggtagctata gttctatcgc attagtggct tgtggtgtgc tgtcttctat atttgcacct
    10921 ttaatattta acgttatcgt cacgttatgt tactaaaaac agtgaaatct caaaccttat
    10981 ttggtaactg gctgaaatca aggtacaata ccgtgatttt tcaatgaaaa tagagaatta
    11041 tgcaagaaca aataacacaa gaaaaagatc tttctacgct taaaaccttt aagcgtttat
    11101 ggccgactat cagcccgttt aaagcgggtc tgattacagg tgctgtcgct ttagtattaa
    11161 atgcgttagt ggattctagt cttatctatc tcctcaaacc cttgctagat gaaggctttg
    11221 ggcaagctaa taatgatttt ctgaaattga tggcggtgct tgtagtagtt tttattttag
    11281 tgcgcggtat taccaattat attgccagtt actgtttagc ttgggtgtca ggcaaggtgg
    11341 taatgacatt acgccgccat atttttcaac atttaatgta tatgccggta agctattttg
    11401 ataacaaccc gaccgggcgt ttgctctcac gagtgactta cgataccgaa atggtggcga
    11461 gttctgcttc tcattcttta gtgactattg tgcgtgaagg ggcttatctg ctgtcattgt
    11521 ttgtggtgat gatctatacc agttggcagc tttctattgt gttatttgtg atggctccta
    11581 tcattggggt actgatcagt ttcgtttcaa aatattttcg tcaattaagt cgcaatatcc
    11641 aaagttcaat gggggagctt actgtcacga cagaacaaat gcttaaaggg cataaggttg
    11701 tactttcctt tggtgggcag gaaattgaga aagcacgttt tgatcgagtc agtaatgata
    11761 tgcgtcgtaa agggatgaaa gtcgtttctg ctgatggcat ttctgatggt gtggtacagc
    11821 ttatcgcctc ttttgcgtta tctgctgtgc tttatgttgc gaccttcccc gaggtgatga
    11881 gtgagaattt aaccgcaggt tcattcacag tagtgttttc ttcgatgatg gcaatgttac
    11941 gtcctctaaa atcactcacc aatgtgaact cgcaattcca acgtggaatg gcagcctgcc
    12001 aaacgttatt tgaattttta gatttaaaaa ctgaaaaaga tcacggctta atctccgttg
    12061 ctaaagctga aggcaatgtg gaatttaaaa aggtaagctt tagttatgaa ggtaaagagg
    12121 aaaaagcact cgataatatt tctttcacca ttcctaaagg caaaacagta gcattggttg
    12181 ggcgttccgg ctcgggtaaa tcaactattg ccaatttgct tacccgtttt tatgatgtga
    12241 ctgacggtca aattttgctt gatggaatta atattcaaga ttaccgctta aaaaacttaa
    12301 gagaacaatg ctcggtggtt tctcaacaag ttcatttgtt taacgatact attgctaata
    12361 atattgctta tgctgcaatc gacaaataca gccgagaaga aattattgct gctgcaaaag
    12421 ctgcacacgc aatggaattt atcgaaaaat tggaaaatgg cttagacact gtaattggtg
    12481 aaaatggcgc aagtctttcc ggtgggcaac gccaacgctt ggcaatcgct cgtgcattac
    12541 tgcgaaattc tcctgtgctt gtgctggatg aagctacctc tgcattagat acggagtcag
    12601 aaagagcgat ccaatctgca cttgaagtgc tacagaaaga tcgtacggtg ttggtcatag
    12661 cacaccggtt atcaacgatt gaaaaagccg atgaaatttt ggtagtcgat cacggaaata
    12721 ttattgagcg tggcagccat acggaattgt tagcacaagg tggggcttat aaacaactcc
    12781 atagtttaca attcggagcc taatttgtag gggagaaata tgtttctccc caattaatga
    12841 taaaaacagg gcgaaaaata tttcgtccct acaataattt atttggatac tatgaaaaaa
    12901 ctgacaaaac ttttatctct tagtgcttta ctggtcttaa ccgcctgtaa ttcggtacta
    12961 aatgcctcaa cagaggtgca acaaccaaca gtacaaattc cgcatgacga tccacaatgg
    13021 cagcagcatt tagcgaaact gagccaaatt caaggctata ctgcaacggg gcaatttggc
    13081 tatatttcgc ctgaagagcg tttttcttcc catttcaact ggcgttatac taatccaatc
    13141 caatttgggt tagagctttc ctcgaatctc tcgactaaat cactgaaatt agagcgtaat
    13201 aaacgaggct taacggtttc ggacaatgag ggtaatagcc gttctgaccg tgatgttgat
    13261 gcgttaatgc aagagattat cggtgtttcg tttcctatcg atcagtttgc ctattgggta
    13321 aaaggcttgc ctgaaaaaga tggcaactat attgtgaatg aaaaacgcca gctgtcgcaa
    13381 tttagttatc cgcttaatgg cacgctttgg aaagcaagct atgtggagta tcacgaagat
    13441 cgtgtaccaa acttaccgaa gctgattgtg cttgaaaacg gcactcaaac gttgaagatc
    13501 cgcattgaaa aatgggcgta ttaatgaaga aagtcacctt acccagcccg gcaaaattaa
    13561 acctgttttt atacattacc aataagcggg cagacggtta tcacgagcta caaacgctgt
    13621 ttcagttttt agattttggt gatgaaattg agattgagat cacagaaagt tcagaggttg
    13681 aattaattaa tccggtagaa ggggtggcaa ctgaggagaa tctcatttac cgagcagcaa
    13741 aacttttgca aaaaacgacc gcttgtaggc aaggctgccg tattgggatt aaaaaaaacc
    13801 taccgatggg cggaggtgtt ggtggtggat cttctaatgc tgcaacagta ttagtcggtt
    13861 taaatcactt gtggaatacc gagctttcat tggaaaaatt ggcagaatta ggcttaagtt
    13921 taggggctga tgtgccgata tttgttagag gtatggctgc ttttgccgaa ggcgtggggg
    13981 aggtgttaac tccttgtgat ccacaagaaa aatggtatgt agtgctaaaa ccagaagtgt
    14041 cgatttcaac cgcagcggtg tttaccgacc cgaatttacc tagaaatacg ccaaaacgcc
    14101 ccttagccga attattatct ttaccgtggg aaaacgattg cgaaaaagtt gtacgagaaa
    14161 agtattctgc ggttgaagat cttatacaag aattgttaca atatgctcag tttaggctaa
    14221 caggcacagg tgcttgtatt ttcgccgaat ttgaaacaaa agcagaagcc gagcaggttt
    14281 ttgcacataa accggaagcc gtcttcggtt ttgtggcgaa agggcaaaat atttcgccat
    14341 tacatcaaat gttattccaa atctaaccat cttaacctta aggatcaatc catgacagat
    14401 attaaactgt ttgcgggcaa cgcaactccg gaacttgcta atcgtattgc aaaacatctt
    14461 tatacctcat taggtaatgc aacagttggt cgttttagcg atggtgaaat tcaagtacaa
    14521 atcaatgaaa atgtgcgtgg aggcgatatt tttattgtgc aatccacttg tgcaccaact
    14581 aatgataatt taatggaatt gatcgtgatg gtagatgcgc ttcgccgtgc atcagctggt
    14641 cgtattaccg cagtgattcc gtatttcggt tatgcacgcc aagacagacg cgtgcgttcg
    14701 gcccgtgtgc caattaccgc aaaagtgatt gctgatttct tatccagcgt aggggtagat
    14761 agagtcttaa cctgcgactt acacgcagag caaattcaag gtttctttga tgtgccggta
    14821 gataacgtat ttggttcccc tgtgttaatc gatgatattt tgaaaaaatc cgatttggtc
    14881 aaccctatcg tggtttctcc agatattggt ggggttgttc gtgcaagagc ggtggcaaaa
    14941 ttattaaatg ataccgatat ggcaattatt gataaacgtc gtccaaaagc gaatgtatca
    15001 caggtaatgc acattatcgg tgatgtggct gatcgtgact gtattttagt tgatgatatg
    15061 atcgatactg gtggtacttt agtcaaagcg gctgaagcgc tgaaagaacg tggcgcccgt
    15121 cgtgtctttg cttatgccac acacgcggta ttttcaggca cagcagctca aaatttagcg
    15181 aatcctgctt tagatgaaat tgtagtaact gatactattc cactgagtaa tgagattaaa
    15241 gcattaaata aagtacgtgt tttaacatta tccggtatgt tagcagaagc aattcgccgt
    15301 attagcaatg aagaatccat ttcagcaatg tttgatgcct aatttatgag aaaaaaccca
    15361 gtcgaaagat tgggtttttc atatctgttc actactatat ttagtttaag ataatttgta
    15421 tgtattccct gattcgtaaa ttactttttg cactagatac ggaaaaagca catcaattct
    15481 ctattcaggc acttgcttta gccggaaaat cgcctttttc gattctgcca acacccgata
    15541 atccgaccca agtaatggga ctcacgttta aaaatccaat agggcttgca gccggagcgg
    15601 ataaaaacgg tgaagcgata gatggttttg ggaaattagg atttgggttt attgaggttg
    15661 ggactattac tcctctcgct caagacggaa accctaaacc gaggcaattt cgtattgtag
    15721 atgcagaggg aattattaac cgcaatggat ttaataataa aggcgttgat gttttagtag
    15781 aaaatgtaaa aaatgcaacc tatagtggta ttttaggtat taatattgga aaaaatgcgg
    15841 ttacaccaat tgagcatagc tttgatgact accaaatttg tttgcgtaag gtttaccaat
    15901 atgctgatta tgtggcggtg aatatttcat cacccaatac caaaaatttg cgcagtttac
    15961 aatatggtga ggcattagat gatttgctgc gaaacctcaa aaatgagcag gcacaacttt
    16021 cgcaaaaaat ggggaaatat cgaccgcttg ttttaaagat tgcgcctgat ttaaccgatg
    16081 aagaaatcgt ttctgtagcc gatagtctta ttcgttacca aattgatggg gtgattgccg
    16141 gcaatactac cttgtctcgt gaaagtattg ccggattacc gtattcggaa caactgggtg
    16201 gattaagtgg caagccatta cactcattaa gtacaaggtt aatttcaaaa ttatctgccg
    16261 agttgggcga gagaatacca attataggtt gtgggggagt ccattcgtta gagagtgggc
    16321 aggagaaagt gaatgcaggt gctagtttat tgcaagtcta ttccgcaatg atttaccaag
    16381 gaccatcatt aattcaaacc ttagccaaac accttcagct gaacagttag ggatagattt
    16441 ctagttaaaa atgattggtt aggtttattt ctgtcatctt agtggaatag atggcggtat
    16501 tagctatcta tcaaaaatag acaaaattgc ctatttttgc
//
LOCUS       DANLXK010000046        16515 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.046, whole genome shotgun sequence.
ACCESSION   DANLXK010000046 DANLXK010000000
VERSION     DANLXK010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16515
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..598)
                     /locus_tag="PXD88_001258"
     CDS             complement(<1..598)
                     /locus_tag="PXD88_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL6280839.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKG"
     gene            complement(595..1020)
                     /locus_tag="PXD88_001259"
     CDS             complement(595..1020)
                     /locus_tag="PXD88_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280840.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            complement(1340..2026)
                     /locus_tag="PXD88_001260"
     CDS             complement(1340..2026)
                     /locus_tag="PXD88_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280841.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            complement(2421..2744)
                     /locus_tag="PXD88_001261"
     CDS             complement(2421..2744)
                     /locus_tag="PXD88_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6280842.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(2857..3075)
                     /locus_tag="PXD88_001262"
     CDS             complement(2857..3075)
                     /locus_tag="PXD88_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL6280843.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
     gene            complement(3350..4576)
                     /locus_tag="PXD88_001263"
     CDS             complement(3350..4576)
                     /locus_tag="PXD88_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6280844.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
     gene            complement(4851..5217)
                     /gene="ssrA"
                     /locus_tag="PXD88_001264"
     tmRNA           complement(4851..5217)
                     /gene="ssrA"
                     /locus_tag="PXD88_001264"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            5383..6342
                     /gene="rpoH"
                     /locus_tag="PXD88_001265"
     CDS             5383..6342
                     /gene="rpoH"
                     /locus_tag="PXD88_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL6280845.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            6508..6801
                     /locus_tag="PXD88_001266"
     CDS             6508..6801
                     /locus_tag="PXD88_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL6280846.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(6819..7121)
                     /locus_tag="PXD88_001267"
     CDS             complement(6819..7121)
                     /locus_tag="PXD88_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL6280847.1"
                     /translation="MNTYNNTLNNKNLEKKQLLMAIQAIPASQDFIWDGKDDDERPVT
                     PSEFSIAMKKRGRPAGSKKELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(7093..7383)
                     /locus_tag="PXD88_001268"
     CDS             complement(7093..7383)
                     /locus_tag="PXD88_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6280848.1"
                     /translation="MKIYTWDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNE
                     FRIQSFAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAYYEYLQQYFE"
     gene            complement(7521..8060)
                     /locus_tag="PXD88_001269"
     CDS             complement(7521..8060)
                     /locus_tag="PXD88_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL6280849.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
     gene            8131..8808
                     /locus_tag="PXD88_001270"
     CDS             8131..8808
                     /locus_tag="PXD88_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL6280850.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            8993..10840
                     /gene="typA"
                     /locus_tag="PXD88_001271"
     CDS             8993..10840
                     /gene="typA"
                     /locus_tag="PXD88_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL6280851.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(10889..11326)
                     /gene="rimI"
                     /locus_tag="PXD88_001272"
     CDS             complement(10889..11326)
                     /gene="rimI"
                     /locus_tag="PXD88_001272"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL6280852.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(11319..11741)
                     /locus_tag="PXD88_001273"
     CDS             complement(11319..11741)
                     /locus_tag="PXD88_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL6280853.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            11871..12860
                     /gene="rsmC"
                     /locus_tag="PXD88_001274"
     CDS             11871..12860
                     /gene="rsmC"
                     /locus_tag="PXD88_001274"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL6280854.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     misc_feature    12990..13112
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            13134..13511
                     /locus_tag="PXD88_001275"
     CDS             13134..13511
                     /locus_tag="PXD88_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL6280855.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     gene            13578..14018
                     /locus_tag="PXD88_001276"
     CDS             13578..14018
                     /locus_tag="PXD88_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6280856.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEY
                     IYRYAQEKGYNRVYWVTDKNNHQAQQLYNKLANDSGIIQYRKNF"
     gene            14048..15115
                     /gene="hisC"
                     /locus_tag="PXD88_001277"
     CDS             14048..15115
                     /gene="hisC"
                     /locus_tag="PXD88_001277"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL6280857.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            15300..16388
                     /gene="hisB"
                     /locus_tag="PXD88_001278"
     CDS             15300..16388
                     /gene="hisB"
                     /locus_tag="PXD88_001278"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL6280858.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
BASE COUNT         4682 a         3407 c         3570 g         4856 t
ORIGIN      
        1 cgccttttag tatttgttga taggcttcat cattaattag ggctttttga atgaaataac
       61 cggcttctat atttgcctta atctcatcta acgaatcgat tcttatatgg cggtagaaaa
      121 taaagctgtc ccgtgtgata aattcgtgtg ttcctgcctt taaaatacaa gtttcatcaa
      181 gtgctttccc gtctttaatg cttgagcagt ttacacttaa aatcatatct cctttaccgg
      241 tttcaccatc aaagcacgga tcggtaacct gcttatccag ccctagcaac ttcgctttgc
      301 ccattgtggc ttgagtcatt gcgttagggt tttctttctc tctcgccagt atacgagcct
      361 cttccagctc ctttaaaagg tcatcaacgg ttaatttatg gcgttctgcg tgttcggctt
      421 tcagttcctc aatccttgcc gtaatcttgc cgttatccat tagctcttta gcttttcggt
      481 ggacggtttc ggacttcata tcttcggttt cataggcttg gcggtaggct tcgctagcat
      541 tgccggtttc aatataagca aagcaaaaag cctcttgttt tggtgtgagt tcggtcattc
      601 tttcccctcc gccattcgct tttcagcaaa ggcataatcg attttttctc ggtattcttt
      661 gctcatctgc tcccgtgtaa tttcgttgcc gtgtcggtca ataaatgggt ttgttcgttg
      721 tgggtggggg agcttgttga tttcactcaa taagtcatca ttcactaata gcggcgtggc
      781 ggttagctgt tgatgatagg caataatcgc tagagcctct aaaaagcccg tagcccctgc
      841 catttcaata ttgatatgat cttcaaggtc aagagaaagc acaccgataa aaaacggtct
      901 gccgttatcg tggtgcagtc gttcaattcg gatatgcgga aaatctaaaa agctcaaggt
      961 tgctttgata ggttcattca ttaaagcagt aatacccgct aaattaagct cgtgtttcat
     1021 tttggtttat tcctttattc tttccgccac ttttaacagt tggctaagtt gttttcttaa
     1081 aatgccgagt gtgattgaat cggtttcgct tggcattgcg ttatgttgtt gttccagctt
     1141 cgctattcgg ttgcctagca caattaaaag ctcgggcaat gggtaagctc ggtttcagaa
     1201 tagaggctta aaaacgtgaa tagtctgcta aataatcagg tgttatctca gaaaaatcga
     1261 gctttttccc tagtgctgct tctaattctt gtttatttaa aagtaaattt tggaaatcat
     1321 ttaaattcat tgctgccacc tagaacggaa tatcatcatc aaaattaaag ctgcttgatt
     1381 gtttttcata tccgttatta attgctacaa aatcaaaggc tgcttttaaa ttagtattat
     1441 ctttatcaat gcttggactt attccgccat attgtcgata aagctgtata tttttatctt
     1501 tgagtaagcg gtttaaatcg ttagctgttt cactaagact tgagtaatgt ttacttgccc
     1561 attctatgaa gtcataaaca gaaatataat cattttgaat ttggctaatc tctgattgtg
     1621 tttgcttggt ggttaattta tctaacaagg ttggcgattg tgttttaatc agctgtgtta
     1681 tttctcttgc tgttacgtaa taagcattta aatgttcaac atcaatagaa ttttgagcaa
     1741 taacatcact taaaacgcct ttaggctgat cgaaagcgtc tttgaaatgt agtgttttgg
     1801 gctcaatagc atagctttca ccatcttcaa agagagtgca atttacaaaa gcattcgtat
     1861 atattccatt ttgctgaaag gaaaaaatga ggcttttcaa tttatccgct atatgtgaaa
     1921 aaggtttatt tgtatagttt gataattctt gtatcagttc ttgaaagctg attttgggct
     1981 caatacgatt ttcaagccta gaaataaatt gactgtgatc tgccataagc gcccctttaa
     2041 cgtatccctt tactgtgaga gcgtggaaag agaaataaag ggctttctcc tttcgtgccg
     2101 gttaattact ccgccactat ccacgctaat ttgaataaat ccgtatagtt acggattgaa
     2161 cttgataggt tgtattttgc taattattca gataaattac aagtaataag ctgtgtttta
     2221 ttacagtaaa tcaaaatagg ctaaagatgg gtttccggac gctataaaaa agagcattca
     2281 agcggtcata tttcattaag gttttgcgaa tagtgcggaa ttttcggagc agtacgcacg
     2341 caaggagcaa ataaaaagcc gtcaatatcc atcaacggct atttaaaagt gaggttttga
     2401 caggtagcaa gtgataagtt ttagccattt ttgacttgtg gaataagcac taaattgaat
     2461 gcccctagaa ttttttgaat agtgtcaaag cgtggtttgc tgcctttggc tagggtttta
     2521 tataggctct ctctgcctag ccctgtttgc ttggccagct ccgccattcc tcttgctctt
     2581 gctacatcgt tcaaggcttc taaaaattcg tcttggtcgc cctcttttaa cacttccgct
     2641 aaataggctt gaatagttgc ctcatcggtt aaaaactccg ccacgtcaaa agggcgtaaa
     2701 ccgtgctttt ctgctgcctg ttcattgatt tgtattgttt ccattgcttt ctcctgtagt
     2761 ttttaattca gcccataatg ctttcgcttt ctctatatcg gcttgctgtg ttgatttatc
     2821 gccgccgtgt aacaagatat aaattacatt tccttgttat gcgtaataaa ttctatatcc
     2881 ggctcctgtt gctatccgca tttcataaag tccgcctgta ccggctaaag atttatgatc
     2941 gccaaagttg ccattaatcg cattttttat ccgtcttgct accgttgctt ttgcgatagg
     3001 gttctttaaa ttctcaagcc attttgaaaa attatcggta ataataattt gattagtggt
     3061 ttgctctctc atcattgccg gcttcttatt ctatttattg cttattgtat ccattaagat
     3121 acagtgagca agggtttttg ccatttaccc acttttaacc cactttaccc actgtcattt
     3181 tttctttatt tttcagttag ttataaaaaa ataatagtga aaagtgggta aagtgggtaa
     3241 aaatcgaaaa gtttacagaa ttttcatcaa ggggaattac gggcataaaa aagccgtcag
     3301 gcggtttacc taacggcatt acaagcggtc atttttggcg gaaaatttac taggctattt
     3361 tcaaatgata ttgcggtaag ctaccttgcg aacattcctc tacaaaatcc gcccacactt
     3421 ggagcagttt aaaacgttgc tctaggcgtt cgcctctatc ataggcggct ttgattcggt
     3481 cgctgtttaa atgcgataag gcaacctcga ttaaatcgct attgtagcct ttctcattaa
     3541 gataagtgga ggcgatggcc cgcaagccgt gagccactaa tttgcccttg tagcccattc
     3601 gtttgatcgc accgttggcg gtttgagtat tgacgtgcgt ttgtgggttc ttcacgctag
     3661 ggaataaata cgttttaccg ccacttagct ttttaatctc tcgcaaaagt gcgattgctt
     3721 ggcgtgagag tgtgatttta tgctcaatgc ctcgcttcat attttccgcc ggtatcgtcc
     3781 acagtttggc tttttcgtct atatccgccc attttgcctt agccgcttca ttcgggcggg
     3841 tcattgtgag taactgccac agaattaaat agcgtgtctg taaatgaatt tgggcgtttt
     3901 gtaaggtgta taaaaactcg cctaaatctt ccggcttaat ggttttgaaa tgttcaaccg
     3961 ttgggctatc aaactctttc gcaatattgg cggtagggtt aaacggtatc atttcacggt
     4021 gtacggcaaa catcataatt tcattatgtt tttgaattgc ccgttttaac ttctctagtt
     4081 tgccctcgtc ttggtattgc ttgaatgcct tgattgccat tggtgcggtt atttgtgtga
     4141 taggcattct tccaaagtgc ggcaagaggt tatttttaat taaggcgatt acatcttttt
     4201 ggtagttgtc tgaaaaattc ttcttggtct tgcggtgttc cagccacgcc cacgctacat
     4261 tttcataagt gttgctgatt tcgttggcct ttgcctgttc ctgttgttgg cggtgggttt
     4321 gagggtcgat attttgagcc aataatgccc tatattcttc tctaatttct ctcgcttgtg
     4381 ctaaagaaat atcagggtaa gccccaatgc ttaaatcatt ccgctttttt gtgaacggtc
     4441 tttcatacct aaaccgccac aatttagaat ttgaggtaat aacaagtagt aagccgttac
     4501 cgtctcttaa tgggctgtct tccggtttcg cttttcttat ttgggtatcg tttaacggtg
     4561 tgatttttct agccatagta aacctttagg agtataaagc ctaaatctta ggagtatgat
     4621 tttttgtttg ggagtacaaa actaaaagcg ataaagcctt atttgaaaag gctctaaagt
     4681 ggttttagga gtacgaattt ttgggggtat tccggcgtac tcctaaatat actcctaaaa
     4741 tcttcggatt tgattgtatc gtataggtac gcaacggaca ataaaaaagc cttgaaacat
     4801 tgattttcaa ggctttttag gtatcggttg aaccgtatag gattataatt tggtggagct
     4861 ggggggattt gaacccccgt ccgaaatttc tctaccttca gtactacatg tttagtctag
     4921 tctttaattt cgcttattca cagcggacag acacgcaatg aataaactag ctttatttaa
     4981 tttagtgttt cgatcctaaa gcggcggcgt ccacacgatc tcgttttggg tgacttatct
     5041 ttgccctcgt cttacgagcg gaagctgagg agataaggct ttaaagcagg ttattaagct
     5101 gctaaagcgt attgttcgtc gtttgcgact attattttgc ggtttgttta cgaggcctac
     5161 cgcacctcga catgcacctt gggcttcgcc aatcccgtcg aatccaaaat cagccccaaa
     5221 agtagcggta ttctaaagga aagcggtcga atttgcaaaa agttttgcaa gtggcggaac
     5281 ttagcggtat tgaatagctc gaaataaaat catacaaatc ccacaccaga tagatttaac
     5341 tctgttataa tgtaaacctt gctgagagtg aagagaaata gaatgaaaaa atttaacgag
     5401 aacgagattg aagatgctga aattatagat gccgagccga ttgatgttga tgagatagac
     5461 gaagaagaaa catcggtaga agcaatgcat ccggctttgg tttccggctc aatgcctgtg
     5521 ccgcagggca atttggatag ctacatccga atggcaaatc agtatccgat tctcaccgcc
     5581 gagcaagaaa aagaactggc ggagcgttat tattatgatg aagacgttga ggcggcaaaa
     5641 cagctgatcc tttcccatat gcggtttgtg atccatattg ctcgtggcta tttgggctat
     5701 ggtttaccgc tggcagatct gatccaagag ggtaatatcg gcttgatgaa agcggtaaaa
     5761 cggtttgacc cgaatgtcgg cgtgcggttg gtttcttttg cggttcattg ggtgaaagcg
     5821 gaaattcacg aatatgtgct gaaaaactgg cgaattgtga aagtggcaac caccaaagct
     5881 caacgtaaat tattctttaa tttacgcaaa aataaaaacc gcttggcgtg gtttaatgaa
     5941 gaagagatca aaaaagttgc cgatgattta ggggtttcag tggaagaagt acgagaaatg
     6001 gaatctcgaa tgaccggaca agatttaggt tttgacctgc ctgccggtga tgacgatgaa
     6061 gacagctacg ctccttctat gtatattgaa gatagcagct ccaatttcgc cgatgacttg
     6121 gaagacgaac aacataatgg gcaggcaacc gctcaacttg cctatgcgtt agccaccctt
     6181 gatgaacgta gccaagacat catcaaaacc cgctggttag atgacaataa agccacactg
     6241 caagatttag ccgataaata taacatctcg gcagagcggg taagacagct tgaaaatgcc
     6301 gcattgaaga aaatcaagga agcgatttca ttagacggct agaaatgcct acaagcggtg
     6361 atttttttac tcgctacgct cgcacttcgt gccgtcggca gagccaacgt tcaaacgcaa
     6421 gcgtttgtgc aaaattttac gcaaaaagca ccgcttgtat tttgactaaa aatgaggata
     6481 ctatgattaa cattaccgat aaacaaattg acccaacttt ctaccagcgt ctaccagcga
     6541 gcagacggct ttattaacgt tgccaacgct catttaaaaa acattgcccc aaaccaagtc
     6601 agcaatgcga tgttgtttgg ttgtgccaga tttaacgcct atgttgcggc aagcaaggcg
     6661 gaatataaac agcagttggc cgattccaga gaagaagtta ttcaatattt tgtggagcaa
     6721 tacaaagaaa tgctcactgc aaatttagat gaatatatcc aaaacttcga gcgatatatt
     6781 gaagggaaaa aggcggatta accgcctttg ttttgtggtc aaacttgttt tacaaaatca
     6841 cttaaaactt gattaattct actttgccaa cctttacctg aagctctaaa ggcttcaaga
     6901 acgcttttat caagacgtaa cgaaaccaat tctttctttg aaccagctgg tctgccacgt
     6961 tttttcattg caattgaaaa ctctgatggc gtaaccgggc gttcatcgtc atcttttccg
     7021 tcccaaataa aatcttggct tgccggaata gcttgaatag ccataagtag ctgttttttc
     7081 tctaaatttt tattattcaa agtattgttg taagtattca taatatgcct ctctttctgc
     7141 tttagatgct cgccgaaagc taattactct gatgtaatct tccctttctg tatatgcaag
     7201 tgataatacg agtaaacgtc caaatgaata tgcaaaagat tgtattctaa attcattgtt
     7261 acgaataact tcaacatcaa atcgataggg cgatgagaga acttcatctg catcggcaaa
     7321 atctaatccg tgcttggcta aattgatttt gcgtttagtt tcgtcccaag tataaatttt
     7381 cataattatt gtatatacat aaaataaatc taacaagaac taaatttaat ttagcaaaca
     7441 gtaatttgaa aatcagatta gaaatacatt ttttcgatgc agatcgcaaa aataaaatga
     7501 aatttaactg cttgaagagt ctactgagcc attttccccg ctaccgttaa aaaaccatct
     7561 gcggttttaa aaatttcacc gaatccttga gcctccaaaa tttggtcgga gacttcacga
     7621 aacgcccctt caccaccggc tttttgcaat acccaatctg ctttttcttt gatgtaatcg
     7681 agggcgttac gggttgcaat cgcaatgcca cacacttcaa aagccggtaa atctaaggtg
     7741 tcatcaccaa tgtaagccgt ttgctcaggg gtaacaccgg cttgctgcat tagctcaaag
     7801 caggcggagc gtttttccat tttgcctaac aaagcgagat caattttcag cacctctaac
     7861 cgtttgcgga gcaaagccgt atcgccgccc gagagtactg ccactttaat gccacaactt
     7921 tgtaacatct taacgcctaa accatcgtga acgtggaaac gtttcattac ttcgccttgg
     7981 tcggtgtagt acattccgcc atcggttagc acgccgtcca catcggtaat cactaattta
     8041 atcttggtga gatctaacat ttttttgcct caaatatggt atgattttac cattatagct
     8101 tttttacctc cgtttaccaa aggaaccgaa atgtcgattg ccgagaattt atcgcaaatc
     8161 catcaacaaa ttcagcaaat ttccgaacaa tatcaacgag ataacgtgcg tttgttagcc
     8221 gtctccaaaa ctaaaccagt tgaggcgatt caagcggcga ttgaggcagg gcagcgtgca
     8281 tttggcgaaa attatgtgca ggaagcggtc gaaaaaatcg aattttttgc aaatcgcccc
     8341 gaattagaat ggcattttat tgggccactt caatcaaata aaaccaaatt ggtcgctgcc
     8401 tattttgatt ggattcaaac ggtggataga ttaaaaattg ccgagcgttt aaacgaacaa
     8461 cgcccagcgg ataaagcccc gctcaacgtg ctgattcaaa ttaatatcag cgatgaagcc
     8521 tcgaaatcgg gcattgaacc agatgaaatg ctaccacttg cccaagcgat ttctcaatta
     8581 ccgaatttga aactgcgggg cttaatggcc attcccaaac cagaaagcga gccagagcaa
     8641 caaaaagttg cctttcgcaa aatgcagcta ctttttaacc gcttgcaaac agaatttgac
     8701 gacattgata ccctttcaat ggggatgtcg gacgatatgc aagcggcgat tgaatgtggc
     8761 tcgacaatgg tgcggattgg gactgcgatt tttggggcga gacgttagcc agctgagttt
     8821 ttacataaag ctgatacaag cggtcaaatt cgccaaaaac tttgcaaatt ccaccgcttg
     8881 ttttgtagcc aacagcggaa aaagtctgta taattacgcc tcctaatttc ttgactctcg
     8941 ccagttttga tgggcgagag tttttatttt gacttaactt aaagatattc caatgcaaaa
     9001 tgtagatatt tcaaaattgc gtaacattgc aattattgcc cacgttgacc acggtaaaac
     9061 caccttggtt gataaacttt tacaacaatc aggcaccttt ggtgaaactc gtggtgacgt
     9121 tgatgagcgt gtaatggatt ccaacgatct tgaaaaagag cgtggcatta ccattcttgc
     9181 aaaaaatacg gcaattaact ggaatggtta tcacatcaat atcgtagata ccccagggca
     9241 cgctgacttc ggtggtgagg ttgagcgtgt actttcaatg gtagattctg ttctgttagt
     9301 ggttgatgcc tttgatggcc cgatgccgca aacccgtttc gtcacgcaaa aagcgttcgc
     9361 tcacggttta aaaccaatcg tagtgatcaa taaagttgac cgcccaggtg ctcgccctga
     9421 ttgggtggtg gatcaagtgt tcgacttgtt tgtaaattta ggtgcaagtg atgagcagtt
     9481 agatttccca attatctacg cttcagcctt aaatggtgta gcaggcttag aacacgaaga
     9541 cctagcggca gatatgaccc cactttatga agcgattgtc aaacacgttc aaccaccaca
     9601 agtggaatta gatgcaccat tccaaatgca gatttcgcaa ttagactaca acaactatgt
     9661 gggcgttatc ggtattggac gtatcaaacg tggttcggtg aaacctaacc aagcggtaac
     9721 gattgtagat agcgaaggca aaactcgcca aggtcgtatc ggtcaggtgt tggggcattt
     9781 aggtttacaa cgttttgaag caacagaagc ctttgctggc gatattgttg cgattactgg
     9841 tttaggcgaa ttaaatattt cagatactat ttgtgatatt aacgcagtag aggctttacc
     9901 agcattaagc gttgatgaac caacggtaac gatgttcttc tgcgtaaaca cctcgccatt
     9961 ctgcggtcaa gaaggtaaat ttgtgacttc acgccaaatt cttgagcgtt taaacaaaga
    10021 attagtccac aacgtggcat tgcgtgtgga agaaacttcg aacccagacg aattccgtgt
    10081 gtcaggtcgt ggcgaattac acttatcggt attaatcgaa aatatgcgtc gtgaaggtta
    10141 cgagttagca gtgtctcgcc cgaaagtaat ctaccgcgaa gaagacggca aaaaacaaga
    10201 gccgtttgag caagtgacga ttgatatcga agagcaacac caaggttcag tgatggaagc
    10261 acttggtatc cgtaaaggtg aagtgcgtga tatgattccg gacggcaaag gtcgtacccg
    10321 tttagagtat gtgatcccaa gccgtggctt aatcggtttc cgtaacgaat ttatgacgat
    10381 gacctcaggt actggtttac tttactctac attcagccac tatgatgacg taaaaccggg
    10441 cgaaatcggt cagcgtaaaa acggtgtgtt aatttctaac gcaacgggta aggcattagc
    10501 atacgcatta tttggcttac aagagcgtgg aaaattaatg atcgaccacg gtgttgatgt
    10561 atatgaaggg caaattatcg ggattcacag ccgttcaaac gatttaaccg taaactgctt
    10621 acagggtaag aaattaacca atatgcgtgc atcaggtaaa gacgatgcca tcgttttaac
    10681 cacaccggtg cgtttcactc tagaacaagc gttagagttt attgacgatg acgaattagt
    10741 ggaagtaaca ccacaatcgg tgcgtattcg taaacgttta ttaactgaaa acgaccggaa
    10801 acgtgcaagc cgtactacaa ccagtaccag cacgcactaa ctgataaaaa agagcgactg
    10861 aggtcgctct tttggtttta aattctccct acaaatataa cgccattacc accgcatttt
    10921 ctttgctacc gtttggcgtg gggtaatagt ttttgcgggt ggtaacttca ttaaaaccga
    10981 gtgaatcgta gagttttctg gcagaatggt tggattctcg cacttccaac cacagggtgg
    11041 tgagtttccg ttgttgcagt tgcaaaatta attcggaaag taaccgcttg ccaatgcctt
    11101 tgccttgaaa atcaggagca actgcaatgt taaataaggt tgcttcatct agcacgatat
    11161 gactaatggc aaaagccaca attttgtttt gctctaccac ttttaaattc aggtattttt
    11221 caccctgatt atttaataac gtcccctttg accacggcac taaatgggct tgttgctcaa
    11281 tttcaaataa ctgctcgaaa tcttccgctt gaatttgctc aatcacgctg ttctccaaat
    11341 tgtgccgaaa aagtatcaat ttgttgccaa agttggcgtt tggtcgtaga tttggctaaa
    11401 tcttgccaag actcgttttt ccaagcggtc tgattagtaa aactttttgc cattttgacc
    11461 gcttgttctt ccgcttgaat cagccaaaag atcggcgaat gctcaaacac caaacgttgt
    11521 gattgttcgc cagtcagcca ttgatattcg ctgtttttta actttaaagc acgcagaata
    11581 tcggcaaaga gccggctgtg ttggtgatct tcctcacaca ctaccaccaa ttttaccgca
    11641 ttgtttaggc ggatttgagc atcgcctttt agcacttggg gattggttag cacccattgc
    11701 gaaataccca tttcctgtaa cagtaaatca cgacgattca tttaaaacct catcaaattt
    11761 tgcaaatagt atcaaaactc cgcttgaaca gaaacttttt tcaaaaaatt caagatttct
    11821 gtacttaaat tcggtatatt cacgctaaat tttttagata aggtaagaaa atgctctctt
    11881 tagaaagcga agtacttgaa cgccatttgg cgttatttga aaacaagtcg gtgttattat
    11941 ttggcgatgt gcgagatgat tttgcccgcc agctgcaatc tcgtgcggaa aaggttgcgg
    12001 tattcagtag ctattttgat tacgcacgcc accatagtga ggttgaattt ggcttagaat
    12061 gtggtttgag tgccgagtta gcggtgtttt attggacgaa gaacaagcag gaatgccaat
    12121 tccaactgct acaatggctg tcgcaatgcc aagcagggca agaaatgttg attatcggcg
    12181 aaaaccgagc tggtgttcgt tcggtagaaa aactgctcga accgttcggc aatattgcca
    12241 aaatcgactc tgcacgccgt tgtggtttat accattttga gctacagacc gtgccgacat
    12301 tcgattgcaa aaaattctgg aaatcctacc gcttgcaaga cttagatgtg ttcgatctac
    12361 cagcggtttt tagctcggcg gagctggata acggcaccaa attattgctt tcaaccttcg
    12421 acaaagcaga caggctaaaa ggcaaagtgt tagatttagg ctgtggggct ggcgtgattg
    12481 gggcaacgct caaacaacaa tttccgaaaa tcaaactgac gatgagcgat attcacgcaa
    12541 tggcgttgga atccggcaga cgtactttgg cggaaaatca gttagagggg gaagtggtag
    12601 caagtgatgt gttctctcac attaatgaac ggtttgattt aattgtctcc aacccaccat
    12661 tccacgacgg ggtcgatacc gcctaccgag cggtggagga gttgattttc caagctaaaa
    12721 atcacctaac caaaggcggt gagctgcgaa ttgtcgcaaa cgcattcttg ccttacccag
    12781 atttgctcga taaagccttc ggcaaacacg acgtactggc aaaatccacc aagtttaagg
    12841 tgtattccgc aagaacataa taggcagaac aaacggttat aaaaaagccg gtatttgctt
    12901 aaaaaagtgc ttgatatttc tgccggcttg acgtaaattc tgttcatact gttttggagt
    12961 aatgcaatga atttaaacta cactttacat caccaccaca ctttaacctg atatctttcg
    13021 ggcatttggt gtgtgcggaa gataactctt ccgagcaagt gtagcaaatc aataaagatc
    13081 tctcggaagg caactttcga gagatttttt tatagataaa atttgggaat aatatgaaaa
    13141 acccgattga aatttaccaa agccaagacg gcaaaaccca agtttccgtg cagtttgata
    13201 aggaaacggt gtggctaagt ttacagcaaa tggcagatat ttttggacga gataagtctg
    13261 ttatttctcg gcacttacga aatatctacc aagaaggtga actggagcgt gaggcaactg
    13321 ttgcaaaaaa tgcaacagtt caaattgaag gtgctagaga agtcgttcgc ctaaaagact
    13381 atctggtgaa aggctatgcc cttaacgaac gccgtttgca ggaacgaggt atcgagtttg
    13441 agcaggtgat tggtttgctc agtcaataca ctggttgtct tagccttgtt ggtggcagaa
    13501 agtttgcctg aacaaaaaga actgatgatt aaactgattg aacactttat tttattaaaa
    13561 gcataacagg aaaaaatatg agtattaata tttcgccgtt agcctccaaa aatctcactg
    13621 aatggaaact attgtggcaa caatatttag atttttatca agtgaattta gcagatgata
    13681 ttattcaatc aacttggcag aaagtttcag agagtgaaaa tgtaaaggga tttggggctt
    13741 ttgttgataa cagaatggtt ggttttgttc atattgtgat tcacccaaat acttggaatt
    13801 taactgaatg ctgttatttg gaagatttat ttgttttagc tgaatatcgc aaccaaggca
    13861 taggaaaaga attaattgaa tatatttatc gatatgcaca ggaaaaagga tataaccgag
    13921 tatattgggt aacagataaa aacaatcatc aagcacaaca gctttataat aaattagcta
    13981 atgatagcgg tattattcaa tatcgaaaaa atttctaaac tatgtataaa ttatacagga
    14041 acacaatatg acaatttcac aactttcccg taaaaacatt caagctctca ccccttacca
    14101 atcggcacgg cgtttggggg gtagtggcga tgtgtggctg aatgccaatg aatatgccct
    14161 ttcgccaaac tttgatttaa ccgaccgcac ttttaaccgc taccctgaac ctcaaccgca
    14221 ggcggtgatt gaaggttacg cccgatatgc aggcgttgca cctgaaaacg tgctggtttc
    14281 ccgtgggggc gatgagagca ttgagctgat tatccgagcc ttttgcgagg caaacgacag
    14341 cattctctac tgcccaccaa cctacggaat gtacgccgtg agtgccgaca cctgtggcat
    14401 tgcgaccaaa actgtgcctt taaccgccga tttccagttg gatttagccc aaatcaaagc
    14461 taacctcgag ggcgtgaaag tggtgtttgt gtgcagcccg aacaacccga caggcaactt
    14521 aatcaagcgg tcggatttgt tcgaactttt gcaaatcacc gcaggcaaag cgattgtggt
    14581 ggtggacgaa gcctacatcg aattttgccc tgaagctcgc ttggtaagcg agctggcgaa
    14641 tttcccacat ttggcgatta tccgcaccct atccaaagcc tttgccttgg cgggtttgcg
    14701 ttgtggcttt accttggcaa acgctgagct gatcggcgtg ttacaaaaag tgattgcccc
    14761 gtatccgctg cctgtgcctg tttccgacat cgccgcccaa gccctctccc cacaaggcat
    14821 tgagcagatg aaaacccgtg tggcggaagt catcaccctg cgtgccgaat tgcaaaaaaa
    14881 tctggaaaac ttaccgcttg tagaacaagt ttttgacagc gaagccaact acctcctatt
    14941 caaatgccaa gacggacaaa aagtcttcaa agcactttgg gagcaaggca ttattttgcg
    15001 tgaccaacac aaagcgttag gattgcaaaa ttgcattcgg attacggtgg gggcgagaga
    15061 ggagaatttg agggtggttg aggcgattac agcactgagc caatttcaga gatagaattt
    15121 aacgagcagt attttaagag acatttatag cctagcacgg catagccgta ctaggttacg
    15181 cataagtcag tccctttggg actgaataca gagaggcaaa gtctctcact aatgcttaac
    15241 cccatatgcc ttggcgtgtg gggagagtaa tgaataagat acagatacag gagaaaccaa
    15301 tgcaacccac cctttttatc gaccgtgacg gcacgttaat tgatgagcca aaaaccgatt
    15361 ttcaaatcga cagcttggaa aagctgaaat tcgagaaaaa cgtgattcct gccctgctca
    15421 aactcaaggg caaataccgc tttgtgatgg ttacgaacca agacggctta ggcacgagtt
    15481 cgttcccaca ggcagatttc gacaaaccgc acaatgcaat gatggcgttg ttcaactcgc
    15541 aagggattga atttgatgat gtgctgattt gtccacacaa gcccgaagac ggttgcgatt
    15601 gccgcaaacc gcacaccaaa ctgctacaaa aatatatcga ccgccaactg ttcgacccag
    15661 ccaacagctt tgtgattggc gaccgtgcta ccgatgtgca actggcggaa aaccttggca
    15721 ttcgggcgtt gcaatatcac cctgaaaaac tgaactggga tttgattgct gaaaaactac
    15781 tgggcgaagc cgtcaccaac attggcgagc gaccaaagcg ctttgccgaa gttatccgta
    15841 aaaccaaaga gaccgacatc aaagtgcaag tgtggctgga cgaaacaggc aacaacgaaa
    15901 tcagcaccgg cgtgggcttt ttcgaccata tgcttgacca aattgccacc cacggcggtt
    15961 ttagaatgaa catcaccacc aaaggcgact tgtggattga cgaacatcac acggtggaag
    16021 acaccgccct cgccctcggc accgcattaa aacaagcgat tggcgacaaa cgcggcatcg
    16081 cccgtttcgg cttcgtgttg ccgatggacg aaagccgtgc ggaatgtgcg atggacttat
    16141 caggcagacc tttcatcaag ttcaaagcgg atttcaaacg cgacaaagtg ggcgatttca
    16201 gcaccgagct caccgaacac ttcttccaat ccatcgcctt cacgatgctc gccaccctgc
    16261 acatcaaggc aaaaggcgac aacgaccacc acaaaatcga aagcctgttc aaagtcttcg
    16321 gcagaacact cagacagtgc attcgtattg aagggaatga actaccaagc agtaaaggtg
    16381 tattataatc accgtagggg cgggttttaa cccgcccgaa agtgcggttg aaatttgcaa
    16441 agtttttggg gattttgacc gcttgttata aaggatatat tgatgattag agaagttatt
    16501 gactttataa agaat
//
LOCUS       DANLXK010000047        16475 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.047, whole genome shotgun sequence.
ACCESSION   DANLXK010000047 DANLXK010000000
VERSION     DANLXK010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16475
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..519)
                     /locus_tag="PXD88_001279"
     CDS             complement(<1..519)
                     /locus_tag="PXD88_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6280859.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEYK"
     gene            618..869
                     /locus_tag="PXD88_001280"
     CDS             618..869
                     /locus_tag="PXD88_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6280860.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1065..1265)
                     /locus_tag="PXD88_001281"
     CDS             complement(1065..1265)
                     /locus_tag="PXD88_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL6280861.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1324..1836)
                     /locus_tag="PXD88_001282"
     CDS             complement(1324..1836)
                     /locus_tag="PXD88_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL6280862.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(1849..3003)
                     /gene="tgt"
                     /locus_tag="PXD88_001283"
     CDS             complement(1849..3003)
                     /gene="tgt"
                     /locus_tag="PXD88_001283"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL6280863.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3062..3202)
                     /locus_tag="PXD88_001284"
     CDS             complement(3062..3202)
                     /locus_tag="PXD88_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280864.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3296..3868
                     /locus_tag="PXD88_001285"
     CDS             3296..3868
                     /locus_tag="PXD88_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL6280865.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            3970..4188
                     /gene="cspD"
                     /locus_tag="PXD88_001286"
     CDS             3970..4188
                     /gene="cspD"
                     /locus_tag="PXD88_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL6280866.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4278..5192
                     /locus_tag="PXD88_001287"
     CDS             4278..5192
                     /locus_tag="PXD88_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6280867.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            5311..6171
                     /gene="araC"
                     /locus_tag="PXD88_001288"
     CDS             5311..6171
                     /gene="araC"
                     /locus_tag="PXD88_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL6280868.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGY
                     MLQLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPK
                     WNKWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            6358..7332
                     /locus_tag="PXD88_001289"
     CDS             6358..7332
                     /locus_tag="PXD88_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6280869.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            7387..8877
                     /locus_tag="PXD88_001290"
     CDS             7387..8877
                     /locus_tag="PXD88_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6280870.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            8861..9820
                     /locus_tag="PXD88_001291"
     CDS             8861..9820
                     /locus_tag="PXD88_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6280871.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            9823..10773
                     /locus_tag="PXD88_001292"
     CDS             9823..10773
                     /locus_tag="PXD88_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6280872.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            10786..12381
                     /locus_tag="PXD88_001293"
     CDS             10786..12381
                     /locus_tag="PXD88_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL6280873.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEKALFLNTD"
     gene            12611..13813
                     /gene="yedE"
                     /locus_tag="PXD88_001294"
                     /pseudo
     CDS             12611..13813
                     /gene="yedE"
                     /locus_tag="PXD88_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            13849..14118
                     /gene="yedF"
                     /locus_tag="PXD88_001295"
     CDS             13849..14118
                     /gene="yedF"
                     /locus_tag="PXD88_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL6280874.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            14218..14562
                     /locus_tag="PXD88_001296"
     CDS             14218..14562
                     /locus_tag="PXD88_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL6280875.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(14625..15572)
                     /locus_tag="PXD88_001297"
     CDS             complement(14625..15572)
                     /locus_tag="PXD88_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL6280876.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
     gene            15755..>16475
                     /locus_tag="PXD88_001298"
     CDS             15755..>16475
                     /locus_tag="PXD88_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280877.1"
                     /translation="MSIRWENIKPLQGSQNSAFEELVCQLARQEFKSQGKFTRISAPD
                     GGIEAMCELPDGSVCGWQAKYFLSSFSSSQWQQIEDSFKESLKNYPKLTKYYVCVATD
                     RANANVSGKKSFLTKWEEYTQRWKDFAQSQGREIEFEFWGSFELSDLLSKPENAGKKF
                     FWFNESELSDKWFEQYNQQAINNLGVRYTPEINVDLPIAMQLESLARTQIFKKHLSDE
                     FHKLLVEIKSQYKSLYRYEALE"
BASE COUNT         4840 a         3321 c         3193 g         5121 t
ORIGIN      
        1 tttatattca atatttttaa aacgctcatt tgtttcttta gctgtaatct taccaagcag
       61 atttaccaga ttattacctg cctcatcgct tgtaccggca gtgacacgag cctgttggtt
      121 tgcaattaaa agtcgctcaa agccctcaat actactcaaa ccggcttgtt ttgcagctgc
      181 catttgttga ggcaaccaac ttgccatata tgcaagctca aaactacctg cttgcccggc
      241 tgcaacagcc atatccaatg cccgcccaat atcctcttct ttgatgccaa attgttgcat
      301 agaggagatc gcaatttttg ccatatcctc cgagcttgcc cctgttgcca ccgccccttt
      361 ctgcaaagta ggtaatagac tcattgcggt ttcggctttg actgtaccgg aggcaatgag
      421 cgtatcaagc gtaactaacg catcctcttt tgtgccaccc ccaaccttat ccgccttttt
      481 atcaagtttt tggtttactt ctttgagcga gtctaaaata tcgtccagct tttccttaag
      541 agccttattc agacagccta ttaagcctag gcgtaaaagc ccataattgt ggcgtatttt
      601 gggctaatgg cacatcaatg gccccgacta tcagcgatgg tgatcaaatg ttagtggatt
      661 tcagcaaaaa agaagcccgt ggagacgata agatttatct tgtgcaaaat ggtgaaagcg
      721 tttgggtaaa acgtgtaaga aaagtgtggg actacgttga attgattagc gataatgagt
      781 cctaccgccc aatccgaatt acagcagacg aagctcaaaa cttacaaatc atcgggcagg
      841 tagtccacat cggacactct ttagtttaaa acagatttaa aatagtttta aaaccgatca
      901 aacctatgca aaaaatatcg caaaaactgc ccattttttt ctaatcctgc tcattttgtt
      961 ttttgcatag ccccaaccaa acaataacgg cgaacccttg tattcacggg gctcgccgtt
     1021 atttttccgc ccaaattttt ttctttctct ctatgcaaaa aagatcagta ccccacattt
     1081 tcaaccgctt gtagctcaca aagccaacct tgctctttgg caagcagttc aaaatcggta
     1141 aggctactct gctgattgag taaaatttcc aagctatcgc cctttttaag atcgttcatc
     1201 gctttttttg ccattaataa cggcaagggg caggcatagc cggttaaatc taaaacatat
     1261 tgcatagcga aatagggaat aaagaaaaag ggcgaatatt gaaattcgcc caatcacaaa
     1321 agattagagt ttacggcggt ctgccatcac tttgcccata gccgataatt tgtcttgagc
     1381 taaatgctct cgcccaagct caaagagtgg ctcttcaatc gcaatatgca catcataacc
     1441 tgccacaaaa cgctcaatta agtctctatc cacattttca cgtttacctg cgagcagatc
     1501 ttcaagctgt gccgacaaat agtcccaatt tttatgtaaa tgaacgtgct ggcgttccag
     1561 ttcgtctacc tctgcttgag cttgtggttg caccttaata agctcaggga agaaatcatc
     1621 ttcttcatct tcgtgatgta aaggggcaga aatgttgaag tagttcaaaa tctgctgcac
     1681 gtcattcttc actgcttggt ttaccccgtt tttctcaagg taatccggca aaatttgcaa
     1741 ctgtttacag aaacttttta ctttgctgtg gcaagcataa agcatatcaa tcggctctgc
     1801 ccagcttgca aaggtttgtg gttcaagttg ttgcatatac actccttgtt atttctgttc
     1861 ttttacttca gattgtaaag gtggcacttc tttgccaatt cgggcataaa attccactac
     1921 aaaatcatca aaacgatctt cttcgatggc ctggcgaatt tctgccatta ggcgttgata
     1981 gtagcgtaaa ttatgaatgg tgtttagtct tgcccctaaa atctcgccac atttgtctaa
     2041 gtgatataaa taggctttgg tgtagttttt gcaagtgtaa caatcacatt caggatcaag
     2101 cggtgtggtg tctgcacgat atttcgcatt acgaattttt acaatgccgt tggtcacaaa
     2161 taaatgtccg ttacgggcat tgcgggttgg cattacgcag tcaaacatat caataccacg
     2221 gcgaacccct tcgactaaat cttctggctt gcctacaccc attaaatagc gtggtttatc
     2281 tgccggaatt tgcgggcaaa cgtattctaa aatgcggtgc atatcttctt taggttcacc
     2341 taccgccaag ccaccgactg catagccatc aaagccgatt tcaactaatt tttccaccga
     2401 gactttgcga agttcttcat aaataccacc ttgaataatg ccaaataacg cattcgggtt
     2461 ttcaagttca tcaaagcgat cacgagaacg tttcgcccaa cgtagtgaca tttccatcga
     2521 tttttttgca taatcaaagg ttgccggata aggagtacat tcatcaaaaa tcattacaat
     2581 gtctgatcca agatcgtatt ggatctccat tgatttttcc ggcgaaagga aaattttctc
     2641 accgctaatc gggttttgga aagttacgcc ttcttcttta attttacgca gtttacctaa
     2701 gctaaaaact tggaaaccgc cggagtcggt taaaataggg ccgtgccatt gcataaaatc
     2761 gtgcaagtca ccgtgcatct tcatcacttc ttgccccggt cttaaccata aatggaaagt
     2821 gttgcctaat aaaatttgcg cccctgtcgc tttaacttct tcaggagtca ttccttttac
     2881 cgtgccataa gtgccaacag gcataaatgc cggtgtttca acgtgaaatt cgcctttcgg
     2941 gcggttaaaa gttaaacgcc cacgacgagc gttaccactt gttgttttta attcgtactt
     3001 cattttaatc cacaaataaa cagttcgtga aagcggtcaa aaaccaccaa aaatttacca
     3061 attagaatcg aaagtcggtg ccgaccccta agccgattcc aacgccgtta gagccaccac
     3121 cggctccaat actgccaccc acaccggttg atgagcaagc agctaacact aaaatgccaa
     3181 cgcataataa gagttttttc attttttgct gtcctaaacg aaaaagagag tctatgatag
     3241 acccaatgta ttctaacctg tttaatggat taaacctaat tttaaagggt aaattatgaa
     3301 aattttacgt aaattcgctg ctgtatgcgt tgtctcaatg gctatgctct ctgctaacgc
     3361 taatttgctc actattagcg agcaggaaat caacgactat ttagccacca aattagctga
     3421 aaaaattcct ttaaaagata aagtcggtat tcctaaatta tttgaattgg attatcgcct
     3481 gcattcactt accagccaaa ttggcagaac cgaggaaaaa aaagtagcta tttctggcgt
     3541 tgttgatgga cttttaaacg caaaaggcaa gaaatatgct gcctctatcc atttaaatat
     3601 ggataccacg ccttattatg atccacaaaa aggggcatta tttcttaaag atgtcagatt
     3661 gttaagttgg tctgcaacac cggctaaata tcaagcagag ctgcaaatgt ttttgccggt
     3721 gttggctgat ggattaagta gttttttaaa cagtacgcct gtttatactt tagatgaaaa
     3781 taaaacaaaa gaagcaatgg tgaaaaagtt cggcaaagcc attgtagtag aaaatggtaa
     3841 tatcaagcta gaaaccacta ttttttaaat aattttgtga tcttcgtcta atttttacac
     3901 tttgatagtt gagcttttac gcgttttatt tacaatccaa atatcgccat tcattatttg
     3961 gagagttcta tggatatcgg tattgttaaa tggtttaaca atgtaaaagg atttggtttt
     4021 attacatcgg atgtatgtga aggagacatt tttgctcatt tttctgaaat tcaagcagaa
     4081 ggttatcgct ctttaaaagt cggccaaaaa gtacagtttg aattagttca aggagagcga
     4141 ggtgcctcag cctcaaatat cacgcctata agcgaaaaaa cgttataatc cgtcgttaat
     4201 aaaattattg ttataaccat actttattag attttaaagc tcagctttta cagctgagcc
     4261 atttttgctt tttgaatatg ccttcctctt atcaattagt cttaattaac ctactttata
     4321 tcttcggtat tggtctaaat attgtactgc ttaggtttct cagtttgcat tttgacccat
     4381 taaataataa cggtatacgt tttcttgttg gtgggttcac cttattattt ttcattttat
     4441 ggagattccg cacatcgctg tctcagctga ttaaaactcc aaaattgatt gcgatttctc
     4501 tatttgtcgg gttaatgatg tccgcaaata tgtatttttg gctaaaaggg gtcaaaatta
     4561 caaatgctgt taccgtctct atttttgggg tattagctat gccatttggt gtgattattg
     4621 ccgccatatt ctttcaagat gaaagagaac gcattaaaag caaagctttc tggttcggct
     4681 caattttaac gatcatcggt tcactcggat ttatttggca cgggaaaaca ctctcgattg
     4741 gcgaaggatt tattcttggt tctgtgttct tatttttgtc gatcattatc cgtaatatac
     4801 aaaacctagt tgtaaaattt gctcgagaac tgaacgtatt aaccctaagt tgtgtaacat
     4861 ctttaactac ttcactctcg agtctattac ttagccaaca agcaggtaaa tttaatgagc
     4921 tttttactgc accaaactgg ctactattct ctctgatggt tgctggtatt tatgcgatta
     4981 tgatcggaat ggtattaacc tttcacatta tccaaaccca aggactgata acctaccaag
     5041 tattggaact attaatgccg gtttcaacag ccatcattgc ttatatttta ctggacgaac
     5101 gtatttccat tgttcaaatg ggctttgctt gtattgtgat tttaggctca agtatcgcct
     5161 taaagttagt aaaatatcct aagcactatt aggatctttg ctaattaata ttggtaaaat
     5221 tacatttggt ttactaatct gagcgttcat tcattagtaa tgataaacaa gcggttattt
     5281 tttgttattt tttggtaaat actgatagtc atgtataaaa acctttcttt gctttcaccg
     5341 acttatccat ttgaccttga attcatcgcc ggtcttactc aatgtgagaa aggtaactat
     5401 cttgattcta ttgtcgatag gcaacaagga atgcacggtt atatgcttca attaaccact
     5461 tttggtcgtg gttctgtttt tgatggtaag cacgttttta ccgctcatcg agggcagtta
     5521 ctcctcttta cacccaatgc cgttcaacac taccaccgtc acccggaaag ccaatattgg
     5581 cactacaaat gggtctattt tcagccgaat cctaaatgga ataaatggct gaattggtca
     5641 gatatggaag aaaaaatagg acgtatcacc attagcgatg atcgttactt tcaggaaatt
     5701 agccaacttt tcagtaaaat tgaattagaa cttaaatcca gtaaattttt taaagaagat
     5761 attgcaacaa gtttgttgga atacttactt atgaaatgta tttccgccga gaaaattgag
     5821 gttattcctg tcattgatca acgcattttg acagtttgtg atttaatctt aacgaatttg
     5881 gctaaaaatg agagcttaga agcaatggca gaaaaagtat ttttatcgcc atctcgcctc
     5941 tcacatcttt tcaagcaatc gctggggatc agcttagtgc aatggcggga attacaacgc
     6001 atttccgaat ccaaaaaatt gctttatttc tctaacatct ctatctctaa tattgcgaaa
     6061 tccttaggct atgaggattc tctctacttt tccaaaattt tcaaaaagca taccgggctg
     6121 tcaccctctg agtttagaac cttagaacgg cgtaaagaca gtgaaatgtg atcttgatct
     6181 cactttactt tgcatagcag aattttccat atcgataaca aaaagttacc tgtttttctc
     6241 tcattcaaaa gcataagata caaacagctt taatagtgct gtttctatta gagaagggat
     6301 atcaagctct gtgagtgata ttcagtgaaa taacttctta tgtatgaggg aagaacaatg
     6361 aaaaaaccaa cgttcaagca cgcattattt tcaagtattt tagctttagc ctgttacggc
     6421 tcggcatttg ccaatgatgt tgttaatatc tccaaaattg acggtatgcc gtggtttaat
     6481 cgtatggcag agggtgttgt gcaagcaggc aaagataaca atatcaatgc ttatcaagtt
     6541 ggtccatcaa ataccgatgc accacaacaa gtaaagttaa ttgaagattt aattgcgaaa
     6601 aaagttagtg ctatttccat cgtccctaac gatgcaaatg ccttagaacc ggtactgaaa
     6661 aaagcgaaac agaacggtat tgtggtatta accaatgagt cagtcggaca acctagtgcc
     6721 gattgggata ttgaaattat cgataatgca caatttgcag cagactatgt agaagaagta
     6781 gcaaaagcta tgggcggaaa aggcggctat gtgatttatg ttggtggttt aaccgtgcct
     6841 caacataatc tgtgggctga tttattcgtg aaataccaga aagagcatta tccggatatg
     6901 tttgaagtga ccagcagaat gcctgttgcc gaaaatatta atgatgcacg ccgtaccacc
     6961 attgatttag tgaaagccca ttccgatctt aaagcggtcg tttcttttgg ttcacaaggt
     7021 cctattggtg cagggttggc agtgaaagaa aaacgcttaa aaaataaatt aaatgtcttc
     7081 ggaatgatga ttccttccca agcagccaat ttaattaaaa gcggtgatat tacaatggga
     7141 attacctatg acccggccaa tgcaggttat gctttagctg ctgtcgctgc caaagtatta
     7201 aaaggcgaaa aaattgagga tggattagag atcccaacgg tcggtaaagc caaagtagat
     7261 agtgagaaaa aactacttca attccacaat gtgctgaaag tcaccaagga aaatatcgat
     7321 aaattatatt aatttgcttg aaatatgggc tgatagccag cccatatttt ccctcaggag
     7381 gcacttatgg catttatttc gatgcggcat atcagtaaaa cattccacgg cataaaagca
     7441 ttaaatcaag tcaatctctc attagattat ggcgaagcac tttgtcttgc cggtcaaaat
     7501 ggctgtggaa aatcaacctt gatcaaaatt ctttccggcg tttatcaacc ggataaaggg
     7561 gctgaaattc aaattggtgc aacccaatat accaagctga caccacagga atcgattgat
     7621 aaaggtattc aagtgattta tcaagattta gccctcttcc ccaatttaac cgtggcagaa
     7681 aatattgcca ttaacctgca ccgaaaattt ggctgggtga gtcaagatca cattcatcag
     7741 gttgccctca ctgctattca aagcattaat gcaaatctag acctgaatgc aatattagaa
     7801 gatttaccga tcgctcaaca acagttagtc gctatttgtc gagcgttagc acaaaatgcc
     7861 agattattga ttatggacga gccgactgcc tcacttactg caaaagaggt caaagatctg
     7921 ttagatgtcg tcatcaaact taaaagcaaa ggcattagca tcatctttgt cagtcataaa
     7981 ttgcaagaag taatgagtgt ttccgatagc gtattagtgc tgaaagatgg caatatggtt
     8041 gggcaatatc ctatccgtga aatgaatgaa aaacgccttg gtttcctaat gactgggctg
     8101 gaaatcgatt acaagcggtt agatttgccg gattttttgc aaagaaaaac cgtattggaa
     8161 gtccgcaatt taacgctgcc tcatcagtat caagagatta acttttcgct acgagaaggg
     8221 gaaattgttg cccttacagg attgctcggt tcagggcgta ctgagctttg cctaagttta
     8281 ttcggcatta ctcaaccaca atccggcgat attttattaa acggtgaaaa agtgatattt
     8341 aacactaacc gtgatgccat tgccaaaggg attgcttatg tatcggaaga tagaatgcac
     8401 accgggctga ttatggcaga gtcgattcat cacaatatta tttcgactat ttttcacaaa
     8461 atcaccgata aattacagat tattcaatcc tcgaaggctt atgcaagtag ccaagccttg
     8521 attgattcat taaagattaa agtatccgat tcagatttgc ctgttaatac cctttccgga
     8581 gggaacgcac agcgagtttc gattgcaaaa tggctggcaa tcgaccccaa aattattatt
     8641 ttagatgccc cgactattgg ggtcgatatc gccaataaag aagggatctt ccaaattatt
     8701 aaatcattgg ctcagcaagg cattgcagtt atttttgtga ctgatgaagt ggaagagacc
     8761 tactacaaca gccatcgggt aattgtaatg aaaaaaggtc gcattgttga tgaaatcttg
     8821 ccggcatatt ccagtgaaaa atcgattgcg gaggttattt atgaaaatca gcaataatca
     8881 tattctttcc agtacgttac tgattttaat cctattatta accctattta ctcgtgattt
     8941 tgcaactatt gagaaccttt atgatgttgt aaataattac gcaatgttaa tgattttagc
     9001 ttgtggttta tttgtggtat tgctgtctgg cggcattgat atttctttcc ctgctatcac
     9061 tattatttcc caatatgtta tggtcactct gatcggtaaa tatgatgtag gatttgccgg
     9121 cgtttttgtt atttcttcca ccatcggcat attattaggt tttattaatg ctctatttgt
     9181 taatcggctt agtgtccctt ccattattat tacgatctca acactcaata ttttttatgg
     9241 cggactactc tattttacca aaggtgtatg gctttatgag tatcccgaat ggtttaccca
     9301 agaaatcgtg ttctttaaac agataactgc tgagggagtg gaatttggat tatcgtttca
     9361 agcattaatg gctattttgg cggtgatatt aaccggctta attaccaata aactcactat
     9421 tggtcgaaaa atttacgctc ttggtggtaa tccggatgca acctcccgta ttgggtttaa
     9481 tctcttattt ctccatctat ttgcatacgg ttatatgggc tttatggcag gcttggcagg
     9541 catagtgcaa tcttataccg tacaatctgt cgcaccggat tcactactgg gttatgaatt
     9601 aaccgtccta gctgccgttg tattaggtgg tgctagttta tcaggtggta gaggcaccct
     9661 gcttggtaca gtaatgggcg taatgttact ggcgattatt caaaacgggc taaatttaat
     9721 gaatgtatcg tcttactggc aaaccattat taccggtatc atcattatct taagtattag
     9781 tgcaacagcc ttaagtcagc ggaaaaaaca aggagcataa cgatgaaaag taaactggat
     9841 ccaacgattt tctatctctt agcactcttc gcagttgcag ttatcgcctt tagtattttc
     9901 attccggata ttttttggtc tgtcagtaac tttcaatcta tggcatcaca aattccagta
     9961 ttaggtattt taaccctagc aatggcatta ccgatgttaa caggtggaat aaatctttcc
    10021 attattgccg gaatgaatgc ttgctcatta attattgcct actttattac gcaatatacc
    10081 ggtatttctt ggttatttat tgctatttta ttaagccttt gctgtgcctt agccattgga
    10141 ttactcaacg gcacattaat tgccattatt cgtgtttcac caattttggc aaccttaggc
    10201 acaatgactt taattaacgg cattaatatt ctagtcacta acggttcaac cattgcgaac
    10261 tttccggaaa caatgttgag tattaatgct tcagcctttt tatggattcc gctacccatt
    10321 ctaatctttc tctttcttgc tgggctgatt tggtttttct tagaaaaaac tgcaatgggt
    10381 aaagcggttt atttcatcgg caataatgaa aaagccacct attattcggg tattaatacc
    10441 aaaaaagtgc tgatttgggt ttatgttatc tcctcaattc tttgtgtatt tgcagctatt
    10501 ttgatgatgt ctaaactcaa ttctgcaaaa gcctcttatg gtgattccta tttgttgatc
    10561 tccattttag ccgcagtatt gggcggtatt aaccctgatg gaggtaaagg gaaactatta
    10621 gggattatgc tcgccttagt tttattacaa gtgattgaaa gtggcttaaa tatgctcggc
    10681 attagcagtt acattacaat gattttatgg ggaagcttat tgttattctt tatcttcctc
    10741 caaaaaaatc gccttttccg actaacacag taatggtggt agattatgca aaatgaaaaa
    10801 caactcattg aacaaggtaa tactgttatt ggtattgaat tgggctcaac ccgaattaaa
    10861 gcggtgttaa ttagctcaga tgggacgatt ttagcaaccg gtggggcgga ttgggaaaat
    10921 cgactgattg acggtatttg gacctatcat caaaatgaaa tatgggaaaa actacaagct
    10981 gcttatatgg atttaagcaa gacagtcaaa gaaaaatatc acacaaccat tcgcacagcc
    11041 aaagcattgg gaattagtgc gatgatgcac ggctacttac ctttcgataa acacggaaat
    11101 ccgctggttg cctttagaac ttggcgaaac aacattaccc taacctcatc ggaaaaattg
    11161 accgcactct ttcaataccc aattccgcaa cgttggagta ttgctcattt acaccaagca
    11221 ttgcttaacc aagagcctca cttgccggaa attgattacc tgacaaccct ctcaggttat
    11281 gtgcattggc aactgaccga tcacaaagtg ttagggattg gcgatgcttc cggcatgttc
    11341 ccgatagata ctgagttgaa atcctacaat ccaacaatgc tggctcaatt tgatcgagcc
    11401 attgccgact accgtatgcc ttggaaattg gaagcgattt tgccacaagt tcgtgttgct
    11461 ggtgaacaag cgggcaaatt aaccgaaaaa ggtgcaaaat tgttagatcc aaccgataat
    11521 ttgcaagctg gcattccact ttgtccacct gagggtgatg ccggaacagg tatgattgca
    11581 accaactgta tcaaagaaaa aaccggtaat atttctgccg gcacctccgc atttgcaatg
    11641 attgtgttag aaaaagccct atccaaagcc tattcagagc tggatattgt gacgaccccg
    11701 gcaggtaaat tagtggcaat ggctcacgct aataattgca cctctgatat taatgcgtgg
    11761 gtgaatttat tcggcgaatg cttatcggtt tttggcgtaa atatctgcac cgaagaactt
    11821 tatgaaatgt tatttctcca tgccttgcaa ggcgatgcag attgtggagg gctattatcc
    11881 tacggcttcc actccggtga acataatgtc ggtttatccg aaggctgtcc ggttttcttg
    11941 catccaacga atgcccattt taacttagca aactttatgc gaacccatct ctataccgct
    12001 tttggtgcaa tgaaattagg aatggacatt ctcattaacc aagaaaaagt ggaaatttcc
    12061 cgtattctcg gtcacggtgg tatatttaaa acagaaggtg ttgcacaaaa aattctgtct
    12121 tccgcactga atattccatt ggctaccgca agtactgctt caaatggcgg agcttgggga
    12181 attgcattac tggcagactt tctcagcgta tcagaccgtt acagtttaga agaatattta
    12241 gataattgca ttttcaacac caccaaactc aatctggttc aaccggataa aacaatgagt
    12301 gaaggttatg aacgctttat gcaacgttat aagcaaggca ttcctgtggt agaaaaagcg
    12361 ttgtttttaa atacagatta aataattata atttaagtat cacaagcggt tatttttgca
    12421 aaaaacgacc gcttgttatt tacatttgta caaaaaatac ctactataaa gacgcatttg
    12481 taaaatgtgc attgatatat cgcaagtttt gtgtatagga aatgaactaa ttactgtgtc
    12541 aatcagtccc tttcttcatc gttataccct cttgcaaatc cgattaatct atccttagtt
    12601 aaggtgtttt atgttagcga tttggcaaag ttttaaacaa aattatctaa tcaaatattg
    12661 gaatcctgtt gcagcagtga tcgcagctgg tattatttca gcttattatt tcggcattac
    12721 tggcacttat tgggcggtta caggggaatt tacccgttgg ggcggtcatc tgttaaatgc
    12781 tttgggtgtt gatgtttcga actggagcta ttttcaactc atcggcttag acggcaccat
    12841 ctttacccgc attgacggtg tgatgattct cggtatgttt gccggctgtc tttctgccgc
    12901 attatgggcg aacaacgtca aatggcataa tcagccacat aaaaaacgga ttatccaagc
    12961 cttgattggc ggtgcgttag ccggtttcgg agcccgttta gcaatgggct gtaacctcgc
    13021 ctctcttttt accggtattc cgcaattctc cgtccacgct tggtttttca cctttgcgac
    13081 cgccatcggc acttactttg gggtaaaagt gactttatta ccgatgttta gagtgaaatt
    13141 agagctgaaa aaaggggcag caaaaatcaa agaaaacgat ccgaaacaag ctaatcgccg
    13201 tttttgggtt ggtatgctca tttttatcac ttatctttct gcttcccttt atgtaatgca
    13261 atcctcaatc aaacttggtt ttgcaatgct ttgcggctta gcctttggct tattgattga
    13321 acgagcccaa atttgcttta cctccgcttt ccgtgactta tggattaccg gacgggctta
    13381 tatggcaaaa gcaattattt tcggcattat tgccggcaca atcggcgtgt tctcttatat
    13441 tcaattaggt gtttcaccta aaattttgtg ggctggccca aatgccatta tcggcggatt
    13501 attattcgga tttggcattg tgcttgccgg cggctgtgaa accggctgga tgtaccgttc
    13561 aatggaagga caggttcatt ttatgtgggt cggcgtaggc aatgtagtcg gttcaaccct
    13621 gctggcttac tactgaggcg acttagctcc ggtgcttacc cttgattatg aaaaaatcaa
    13681 cctactcaaa gaatttgggc cggttggcgg attattcatc aattatggct tattaattct
    13741 ttgcttaatc gctgtagttt ggtgggaaaa acgcttcctt gccaaagcga aagcaaaatt
    13801 agcaactgcg taatcttttt aacttcaacc aacaagagga aaatgactat ggcattcacc
    13861 gttgtacaaa aactagataa agatccaaaa gacatcacgc ctgattacac cttagatacc
    13921 ttaggcgaac cttgccctta ccctgcgatt acgatgttag aaacaatgcc acagctgcaa
    13981 aaaggagaga tattggaact gttaagcgat tgttcccaat cgattaataa tattccgatt
    14041 gatactaaaa atcacggcta taccctatta agcgtggaac aaaacggcac taaattacgc
    14101 tatttaattc agcgttaatt gcaaaaaatt cgcacaaaac gaccgcttgt cgtaaaatag
    14161 caactattta agagccttgt aacgcaaggc tcttttattc taagaggtaa aagaaaaatg
    14221 aataaatacg ctttacttgc aatattttgg tttattattg gcatttatgc tttacttttt
    14281 cgtgaaagca ctaatgatat accgcctttt ccacattttg ataaagtaag ccattttgcc
    14341 ttattcttta tccagatctg gttatctgca aacgccttta tccgttcaaa gaaagggata
    14401 ccttattttg ggctaataat ttttgcctta ctctatgctt tcaccagcga atgggctcag
    14461 gcaaccttca cctcaacccg agaaggttct tggcttgatg ggctagcaga tatgctagga
    14521 gcctcacttt cattattgct ggtaaaatat tgcaaaaaat aaagcataaa agaccgcttg
    14581 ttatatggtt tagccatact acaagcggtc attttttacc aaaattatgc catcaactca
    14641 tcaatcaatt ctttcacact tttgattttg ttgatttgtg aaatgccatt gcccaccgac
    14701 acatagccat tgtcaaaatc cccttctaac atacccaaac gcattcctgt accagcgttc
    14761 attaccttag caatctcact acgagttgcc ccattttcgc tcatttcaaa gcattttttc
    14821 gctaatccag tcggcagtga acggtagtaa tgtggttcgg tacggaataa cagcagatca
    14881 ttggcatttg cctccacaat ccagtttttc actttttcgc ttgcacggca ttcttcggtg
    14941 gcgataaatg ccgtgccaat ccacacgcct tcagccccaa gcgttaaggc agcctgcacc
    15001 gcttttttat cggcaatacc accagccagc attatcggca aatccacctt gcccacaaat
    15061 tccgccagca cattaaaact gcctacctct ttcatcggca aagtaccgcc ctcatcaaaa
    15121 cccgtcagca ccaaaatatc tgctcccaat gcttgggctt ttaaagcgtc cgccaaattg
    15181 ggattaggca aacggcagat gattttaatg ccagcagctt tgaatttggc gtaaatctct
    15241 gggtcaagcc agccgttatc cagcaccaca ggcacacgct cttcaatgaa taaatccacc
    15301 attaacggaa tcagcgaaaa atcataagac aaaataaatg gtacgccaaa aggcttatcg
    15361 gtcaatgcct taaccttacg aatctcgtta cgcatacggt caagtacttc ttcgttggaa
    15421 gttggattgg tggtttgccc tgcgtgtggg gctaaaaaac caagcccacc agcctcggca
    15481 acgcttgcta ccagatgagc gtccgtcagc caagacattg gcgcttggac gatagggtgc
    15541 ttgatattta agatttgggt aatgcggttc attggatttt cctgtttgaa taaaaagaat
    15601 tggacgtagt ttaatggttt tggatttgag agggaatgcg tgaaaatggg aaggtggttt
    15661 tcggatttgg aaaattatca atgctaaaat acttgaaata cacacgccaa tcctcatatc
    15721 aacaaaattg aatatttaat tatggtaaaa gaaaatgtct attagatggg aaaacatcaa
    15781 gcccttacaa ggttctcaaa atagtgcttt tgaagagcta gtatgccaat tggcacgcca
    15841 agaatttaaa tctcaaggaa aatttactcg aatttctgca cctgatggtg ggattgaagc
    15901 aatgtgtgaa ttgccagatg gttccgtatg tggttggcaa gccaaatatt ttttaagctc
    15961 attttcttca tcacaatggc aacaaattga agattccttt aaagaatctt taaaaaacta
    16021 tcctaaacta accaaatact atgtttgtgt ggcaaccgat agagcaaatg ccaatgtatc
    16081 tggaaagaaa tcatttctta ccaaatggga ggagtatacc caaagatgga aagactttgc
    16141 tcaatcacaa ggtcgtgaaa tagaatttga attttgggga agttttgaat tatctgactt
    16201 attatcaaaa cctgaaaatg caggcaaaaa attcttttgg tttaacgaaa gcgaattatc
    16261 tgacaaatgg tttgaacaat acaatcaaca agccattaat aatcttggtg tgcgttatac
    16321 acctgaaatt aatgttgatt tacctattgc aatgcaatta gaaagcttgg caagaaccca
    16381 aattttcaaa aaacatctga gtgatgaatt tcataaattg ttagtagaaa ttaaatcaca
    16441 atacaaatct ctttatcgtt acgaagcgtt ggaaa
//
LOCUS       DANLXK010000048        16435 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.048, whole genome shotgun sequence.
ACCESSION   DANLXK010000048 DANLXK010000000
VERSION     DANLXK010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16435
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(36..482)
                     /gene="dksA"
                     /locus_tag="PXD88_001299"
     CDS             complement(36..482)
                     /gene="dksA"
                     /locus_tag="PXD88_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL6280878.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(732..1685)
                     /gene="thiB"
                     /locus_tag="PXD88_001300"
     CDS             complement(732..1685)
                     /gene="thiB"
                     /locus_tag="PXD88_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL6280879.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(1729..1872)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2156..3142
                     /locus_tag="PXD88_001301"
     CDS             2156..3142
                     /locus_tag="PXD88_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL6280880.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(3196..3615)
                     /locus_tag="PXD88_001302"
     CDS             complement(3196..3615)
                     /locus_tag="PXD88_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL6280881.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(3693..4448)
                     /gene="kdsB"
                     /locus_tag="PXD88_001303"
     CDS             complement(3693..4448)
                     /gene="kdsB"
                     /locus_tag="PXD88_001303"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL6280882.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(4458..5411)
                     /gene="trxB"
                     /locus_tag="PXD88_001304"
     CDS             complement(4458..5411)
                     /gene="trxB"
                     /locus_tag="PXD88_001304"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL6280883.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            5578..6648
                     /gene="dhaK"
                     /locus_tag="PXD88_001305"
     CDS             5578..6648
                     /gene="dhaK"
                     /locus_tag="PXD88_001305"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL6280884.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            6669..7295
                     /gene="dhaL"
                     /locus_tag="PXD88_001306"
     CDS             6669..7295
                     /gene="dhaL"
                     /locus_tag="PXD88_001306"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL6280885.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            7305..7712
                     /gene="dhaM"
                     /locus_tag="PXD88_001307"
     CDS             7305..7712
                     /gene="dhaM"
                     /locus_tag="PXD88_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL6280886.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(7752..8597)
                     /locus_tag="PXD88_001308"
     CDS             complement(7752..8597)
                     /locus_tag="PXD88_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL6280887.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(8641..8967)
                     /gene="glpE"
                     /locus_tag="PXD88_001309"
     CDS             complement(8641..8967)
                     /gene="glpE"
                     /locus_tag="PXD88_001309"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL6280888.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            9118..9576
                     /gene="exbB"
                     /locus_tag="PXD88_001310"
     CDS             9118..9576
                     /gene="exbB"
                     /locus_tag="PXD88_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL6280889.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            9613..10050
                     /gene="exbD"
                     /locus_tag="PXD88_001311"
     CDS             9613..10050
                     /gene="exbD"
                     /locus_tag="PXD88_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL6280890.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            10066..10977
                     /locus_tag="PXD88_001312"
     CDS             10066..10977
                     /locus_tag="PXD88_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL6280891.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(11046..11927)
                     /gene="cysZ"
                     /locus_tag="PXD88_001313"
     CDS             complement(11046..11927)
                     /gene="cysZ"
                     /locus_tag="PXD88_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL6280892.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            12039..12941
                     /gene="zipA"
                     /locus_tag="PXD88_001314"
     CDS             12039..12941
                     /gene="zipA"
                     /locus_tag="PXD88_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL6280893.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            13006..15063
                     /gene="ligA"
                     /locus_tag="PXD88_001315"
     CDS             13006..15063
                     /gene="ligA"
                     /locus_tag="PXD88_001315"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL6280894.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(15126..16394)
                     /locus_tag="PXD88_001316"
     CDS             complement(15126..16394)
                     /locus_tag="PXD88_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL6280895.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
BASE COUNT         5059 a         3550 c         3294 g         4532 t
ORIGIN      
        1 atgcctctta aaaaagaggc accctgtaaa gttgattata agcctagctg cttttctcga
       61 atttcagcta aagttttaca gtcaatacat aaatcagctg ttgggcgtgc ttctaaacgt
      121 ttaatcccaa tttctacgcc acaggtttcg caataaccat attcatcttc ttggatttta
      181 tacaaggttt gctcaatttt tttcaataat ttgcgttcac gatcacggtt acgaagctct
      241 aaactgaact cttcttcttg actggctcgg tcgttcggat cggcaaagtt agtcatatct
      301 tcttgaagct ggcttttggt acgctccgct tcttccataa tttgactgtg ccacgctttc
      361 agaattttgg tgaaatgctc acgttgagct tcattcatat attcttcgtc ttttttaagc
      421 tcataaggct caacgcctgc taatgctaat aaaccgagtg aggttttagc cgcttgagtc
      481 atagatattt actccttgtt ccctgtttat tggaagtttt attgttaaaa ttattgcccg
      541 aatacagact aacttccttg taaccgcact atacgaaaaa atcaacatct tcgggtttta
      601 aataatggcg gctataaata acacaaaaac gactcattaa tcaaatgaat ttgcaaaaat
      661 tttgcattca aattgatttg attgcacaaa aaaatagccg aacatccatt cggctatttt
      721 tcaaacactt tttaccagct ctttgaccaa tcggctaacc atttttggat agtttcagta
      781 gtcggtggcg taaattcaat ggttttatag gttggcattg ccgcaaaagc cggatcaacg
      841 ccgtcggtta aaaccggatt cattacgttg tggtaagaaa taatatgttg cgattccggt
      901 ttgtgcaaaa attcaagaaa ttgatttgcc aatgcttttt gttggctgct tttgacaata
      961 gccgcatttt ctacttgcac caaatgccct tcctcaaacg gagcagccac atatttatcg
     1021 gtgttttcgt gccacttatg atataaaggc gatgtagtat agcttagtac caaatccgac
     1081 tcgcctttta agaacgctcc ataagtttca gaccaacctt tgcctaccgt taccgtatgt
     1141 tttgccaatg ttttccaagc agttggagct tcatcgccat acacttgatt tacccacatt
     1201 aagaagcccc gcccaacgct gctggtacgt gggtcttggt aaatcacttt taaatcttgg
     1261 cgttccacca actcttttaa actttttggt ggatttttca gcttctcttt atcgtaaata
     1321 aaagcataag aacccgtgtc ataagggaag aaaattttct gttgggtttc taatttggtc
     1381 tttgcttcaa actcggcaaa caagccactt ttttcggctt caggttgcag gaaattatca
     1441 ataccgacca ccacatcagc tttggttttt gctccctcca aacgcaagcg gttgaacatc
     1501 gttacgctat cgtcaagcgg aacaaatttg acatcacagc cacactcttt ctcaaaattc
     1561 tgctctaatt taggagcagg tccatattcc gaagcaaacg agctgtaagt gtaaacggtt
     1621 aaggtcggtt gattggcata aacacttgca cttaataacg caagtgaaga gaggataaat
     1681 ttcataacaa ttccttctaa attaaatgaa tagaaggatt taagaaaggc aagttgctat
     1741 ctcaaatccc tacgctgata ttaatcagat caggttctat gggtatttct cagccacaag
     1801 cggttaaatt tcggcaaaaa tttgcaaatt tttacgcaaa aacaaccgct tgttgcaccc
     1861 caatgagaac ggcttcattg taaaaagttt gcaggcagat ttcaaccaaa gcaaacgttt
     1921 gctatttgta ttaaaaatcc gtatactacc gccctagtcc aaacaaggaa ctagaaatga
     1981 attgcacaac atcggttaaa tcaaattccc aacagctacg cttcaacttt agaggcgtag
     2041 ctgtttttct attcatttca aaccattcaa aatcgctgtt atagcgattt tttttcgcac
     2101 gcttgcaatt accgcaagcg gttgagccac attaacagag agaaaaggaa taaaaatgag
     2161 ccaattgatt cgtaccctaa aaggacatat tcgtgatgaa atcatcaaaa aaggcggttg
     2221 ggtaaatgca cacgcccacg cagatcgtgc atttacgatg acgcctgaaa aaatcaccgt
     2281 ttaccaaaat gcgaatctac agcaaaaatg ggatttggtc gatgaggtaa aacgtaattc
     2341 aagcgtagaa gattactacc gccgcttttc ccaagcgatt gaattgatga tttcacaagg
     2401 ggtaacggca tttggtactt ttgtggatat cgaccaagta tgtgaagaca gagccattat
     2461 tgccgctcac aaagcccgtg aagtatataa aaacgacatc atcttgaaat ttgctaacca
     2521 aacgttgaaa ggcgtgattg aacccaatgc gaaaaagtgg ttcgatatcg gctcggaaat
     2581 ggtggatatg attggtggct tgccttaccg tgacgaactg gattacggca aaggcttgga
     2641 agcaatggat attttaatgg ataaagccaa atcgctcggc aaaatgctcc acgtccacgt
     2701 tgatcaattt aactcaccta aagaaaaaga gaccgaacaa ctgtgtgata aatcgattga
     2761 gcatggtatg caagggcgag tggttgccat tcacgggatt tccatcggct cgcacccgaa
     2821 agaatatcga aaaatgcttt accaaaaaat gcgtgatagc caaatgatgg tcattgcctg
     2881 tccgatggcg tggattgata gcggacgtaa ggaagattta caaccgttcc ataacgcttt
     2941 aacccctgct gatgaactca ttcctgaagg cattactgtt gctatcggca cagataatat
     3001 ctgtgattat atggtaccgc tttgcgaggg cgatatgtgg caagaactca gccttttatc
     3061 agcaggctgt cgttttacta acctagaaga aatggcaaat attgccagta tcaatggtcg
     3121 aaaagtactg ggtttagtct aactgaataa acgaaaggcg aaccctaggt tcgcctttaa
     3181 taacagcata accgattatt taaacaagtt acccaaaatc ccttttgccg cttgagctaa
     3241 taagtcattt gcatcaaagt tttttaagtc ttcaacatta ccattcgggg ttaaagtatc
     3301 cacgattttt ggcaagaact gggctaataa atcgctcgca tcagcagcat caacacccgc
     3361 ttcttgagcc acattttgaa tgttttcttg cccgaacaca ttactgattt gttcgcccga
     3421 aacaggtgca ttgtcttcat cgctgctgat ccaagtgcgt aacacatcat ctaatccgcc
     3481 ttgttggaat ttggcaatca gcccttcaat cccaccttgt gaggcgagta aattttgaat
     3541 taattgagtt gcagttgatt ggttattgcc actcaatact gaagaagcca atgaacctaa
     3601 aatatttcct aacataattt ctcctatgca agcggtacaa ttttgcgaaa attttgcaaa
     3661 aaaacagcaa acttcgaccg cttgtaatca ctttaacgag ctaaaatggc tcgcactctt
     3721 tccaaatctt ccggcgtatc cacccccact tgcggggctt ctttcgccgg ttcgatatga
     3781 attttttcac cgtgccataa ggctcttagt tgctcaaggg actcaagctg ttctaattgt
     3841 gtcggctgcc acgccacata ttgtttcaca aaaccggctc ggtaagcgta aatgccgata
     3901 tggcgtaaat aaccttgagc ggcaacaaaa ctgtcatcac aatccggaaa actgtctctg
     3961 gcaaacggaa tgctggctcg ggaaaaataa agtgccattc cgtttttgtc tgccaccact
     4021 ttcaccgcat ttgggttaaa tagctcttct cgggtcgcta atttcacacc gagtgttgcc
     4081 atattgactt gataagcatc taaattttga gctacctgag taacaattac cggtggaatc
     4141 agcggttcat caccctgaat attcacaata atttcgctgt cggcaatctg cattttttcg
     4201 atcacttccg ccaaacgctc agtgccggaa ttgtgttttt ccgaagtcat acagacttcc
     4261 gccccaaaag attgagcgag ggcttcaatt tcagggtgat cggtggcaat aatcacacgg
     4321 cttgcaccgg caagctgagc tttttcccaa acgtgttgaa tcatcggttt gcctgcaata
     4381 tccaacaacg gcttacgagg caaacggctg gaagcgtaac gagcaggaat aattacagtg
     4441 aatttcatag gctatcctta tgcttcttga gcatctaaga aacgttctgc atccagggct
     4501 gccatacaac ctgtgccggc agaggtaatc gcttggcgat agttatgatc catcacatca
     4561 ccggcagcaa atacgccttc cacagaagtg gcagtagcat tgccttccaa acctgatttc
     4621 actttaatgt agccgttttc aagttctaat tgaccttcaa acattgccgt attcggtgcg
     4681 tgcccaatcg ccacaaagaa accatcaacc ttaatttctt cgctcaattc ttctttggtt
     4741 gattttaaac gtaagccggt aacgcccata ttatcgccta acacctcatc aaccgtacgg
     4801 tctgtgtgca gaataatttt gccttcttca atacgttttt gcagacgacc aagcaagatt
     4861 ttttcagcac ggaagctatc acggcggtga attaaatgca cttcacttgc caaatttgcc
     4921 aaataaagtg cttcttccac agcagtattc ccaccaccga ctaccgcaac cggtttattg
     4981 cgatagaaga aaccatcaca agttgcacaa gccgacacgc ctttgccttt gaaatgctct
     5041 tcagaaggca aacctaaata tttcgccgac gcaccggtgg caataattaa cgcatcacag
     5101 gtgaaagtgt ataaatctcc gtttagcgtg aatgggcgtt tagataaatc cactgaatga
     5161 atatgatcaa acacgatttc agtttcaaat ttttcagcgt gcttgagcat tttgttcatt
     5221 aactctgtgc cggtaatttg ttcaaattcc cccggccagt tctcgatttc atcggttgta
     5281 gtgagctgtc cgccttgttg cataccggtg actaaaaccg ggtttagatt ggcacgggcg
     5341 gcataaacag cagcggtata accggcaggc cctgagccta aaattaaaag tttggtgtgt
     5401 ttagtggtca taatgaatcc tctgaataaa tattaatgtt tattttagcc taaatttcag
     5461 ttcaactcta ttttcgtttt cgctcaactt ttttcaattt tgtgacaaag ttaacagaaa
     5521 tccgactgtg tttcttgtaa attgtgacag tctaattcat ttaaaagggg caaaaagatg
     5581 aaaaaattaa ttaattcaat agaaaccgtc ttagatgagc aactttctgg ttttgtgaaa
     5641 gcacattctg atttaacact taacacagaa cctgtctata tttaccgcac aacgccaagt
     5701 aatcaaccta aagtagccct tatttccggt ggtgggagtg ggcacgagcc aatgcacgcc
     5761 ggttttatcg gtaaaggaat gttagacgga gcttgccccg gagcaatctt tacatctcca
     5821 acgccggatc aaatgtttga atgcggttta gcggttgatc gtggcgaggg tgtattgcta
     5881 attattaaaa actataccgg tgatgtgctg aattttgaaa cagccaccga gctacttgca
     5941 gatagcggtg taaaagtcgc aaccgtgttg gttgatgatg atgtggcagt caaagacagt
     6001 ttatatactg ccggccgccg cggtgttgca aatacagtat taattgaaaa gctgttagga
     6061 gctgcagcgg ataaaggcta taacttatcc gaattagcca aattagggca tcagttaaac
     6121 aataacgggc attctatcgg aattgcctta tctgcttgta ctgtgccggc tgccggtaag
     6181 ccatcattta ctttagctga aaatgagatg gaatttgggg taggtattca cggagaaccg
     6241 ggcattgaac gtcgcccctt tgaaaatctg gatagtaccg tgaaacaaat gtttgagacc
     6301 ttaattgctc acggcgatta tcaacgtaaa attcgccatt ggaatacaca aacccaacaa
     6361 tgggacgaaa tcgaagaaag caaagtggca ttgaaaaaag gtgatcgtgt tattgcttta
     6421 gttaataact taggagcagt gccactatcc gaactttatg ctgtttatga tgcgttagaa
     6481 aaagagtgcc aaactttcgg cttaagcatt gaacgcagtc ttgttggatc atattgcacc
     6541 tcgctggaca tgcaaggtat ctctatcaca ttactgaaag ttgatgagga tattctcaaa
     6601 ctatgggatg ctccggtaaa tacaccggca atgcgttggg gtgaataatt agattgaaag
     6661 gataagttat gacaatatca aaacaacaga tcttaaaatg gcttgaaaat tgccaacagg
     6721 taatgactga aaaacgggat tatttaaccg aattggatac cgttattggc gatggcgatc
     6781 acggtttaaa tatgcagcgt ggatttagta aagcacttga aaaagcccat accgtgcaag
     6841 ataaagatat cggcaccctg cttaaaaccg ttggaatgac attattatcg caagtagggg
     6901 gagcgagcgg ccctctctat ggttcatttt ttattaaagc ggctcaaggt gctacaggca
     6961 aagagcaact gagctttaac gagttactgg cacttctaca gcaaggagca gaagctatcg
     7021 tacaacgtgg acacgcacaa gttggcgata aaacgatgtg tgatttatgg ctgccattac
     7081 tcgaagactt agctcaagcc gatagcactc aaccaattgc tcaaatctta ttacaagcgg
     7141 tcgaaaaagc agaaaatttt gcaaatcaaa ccgctccatt aatggcgaaa aaagggcgtg
     7201 ccagttactt gggcgaacgc agtatcgggc ataaagatcc gggagcaacg tccagctact
     7261 atatttttaa agccttagct gaagcattac agtaggaggg gtaaatggtt aatttagtga
     7321 ttgtttcaca tagtgctaaa ctggcggaag gcgtggggga aattttggct caaatggcac
     7381 aggggggctg taaaatcgcc cttgccggcg gcattgagga tacctcaaat cctatcggca
     7441 ctgatgcggt aaaaataatg caagcgattg aatcggtatt tagcccagac ggtgtgattg
     7501 tgtttgtcga tttaggcagt gcaattttaa gtacccaaac cgccatagat ttactggagc
     7561 cggaacttgc cgaaaaagtg atcattagct acgctccttt agttgaaggt gcttttgctg
     7621 ctgtagttgc agcctctgcc ggcgatagtt tagaagcggt attaaatgaa gcgaacgaag
     7681 ccgctgctct taagcaggaa caagccaatt agtaaaaatg ccgtatcgaa aaatacggca
     7741 ttttagtttt attagtacaa tagtgaataa agctgtcttc taaatttcgg cacaatcggg
     7801 tctgtaccca gtgcagataa gattgccaga aattggcttt ttacctcgcc gttcgctaca
     7861 tttaaatccg attttaacca atcaaaaagt aacgtgagtg cttcttcatt tttatgagct
     7921 tggtgtagct gatttgccaa tttaatcgca atttcagggg ttttgctgtt cgcataatcc
     7981 gcttgaagct gttgtaattc gggcgattcg ctggcttgtt ccaataattc gatttgggct
     8041 tgcaaaccgt gccaacggct gtctctgtct tgaatcggga tcgctttaag gatttcacga
     8101 gcctcttcca cgcttttcat tgcaatgtaa gtttcggcat agagcaaagc gaaatcgctg
     8161 tttttcttat cggtcatttc ccacgctgat ttcagcagcg gcaaggcttc ggtataacgc
     8221 tgatcttgca ataattccaa ggcttgttga aatttcagct cttcctcttt cggtaaaata
     8281 tttgccaacc gaatccgtaa ttcctgctca cttactgcac cttgaattgc atcaatcggc
     8341 tgaccgccgg caaacaaata gagcgttgga atttgttgaa tgcgaaattg agcagccaat
     8401 gcttgttgct catcacaatt taccgtcgcc aataaaaatt ggttagggtt ttcatccgaa
     8461 atacgacgta gtaaggcatc catttccaat gaagccactt cccttggcga aataaaatga
     8521 aacaccgtcg gcacttgtgc cgctgctgcc catacttcac taaaattctg ctcgtttaca
     8581 tttacaaagt agtccataca aaaccttctt aagctaaaaa ttacttttta tattgtagca
     8641 ttaataagaa gtttcaatag gtagcccgtt tctctcccac gcttcaaaac caccttttac
     8701 actataaaca ttctcaaacc cttgttcgat taaaaactgt gctgtacttt ggctactcac
     8761 tccgtgatag caaatcacaa ccaccggttc gtcataatcg acctcgtcta aaaacttacc
     8821 ataactctgg ttggttaaat gaaacgcatc ctgtgggtgg ctgtaaacat aacggcgggc
     8881 atcacgcaca tcggcaagca ccgcaccttc gttttcgatt aattcccaag cctgttgcgg
     8941 gctaatttct ttaaatgtag tttccataat cactttccct caaaaaacgt gcaactatac
     9001 cataaaattc taaaaagaat ggctattatt ccaagttgaa aatttgatgt ttgtcagata
     9061 taattgcaaa ctattttcaa atgcactgat ttaaaactac cacagtttga ggattttatg
     9121 gagcaattat ttcaattttt agaacatcat actgactttg ttatattagg attactaggc
     9181 ttattaagcg taatctgcct ttggaaagct attgaacgta ttatgtttta ttccaaagta
     9241 gatatttcaa aatacgatac cctcgaagaa ttagacatcg atttaaccca caatttaact
     9301 accatttcga ctatcggctc taatgcccct tatatcggct tattaggaac cgttgtcggt
     9361 attcttttaa ctttctatca tttaggtcaa tcaggtggtg atattgatgc ggcctctatt
     9421 atggtaaacc tttctttagc tctaaaagcc actgctgtcg gtatcttagt ggcaattatt
     9481 gcaatggttt tctacaatgg ttttggtcgt aaagtggaag aaaacaaact gaaatggttg
     9541 gcattacaat caaaaaagcc tcatcaagcg gtgtgattta gtccattttt tgcaaattaa
     9601 taaggcagaa caatgaaaaa attcgatgaa atcaacatca ttccatttat tgatattatg
     9661 ttggtattac tggctatcgt gttagttacc gcctctttca tttctcaggg taaaatccaa
     9721 gtaaatgtac cgaaagcaag tacaacacag ccaatgaaag cagacgattt agcgaagctt
     9781 ttaaccatta ccgaaaataa tgagtttttc tttaatgatc aagcaataac taaagagcaa
     9841 ttaattgctg aagttgccac ttgggataaa agccaaaaag tgtcactcaa agttgatggt
     9901 gcagtcgcct tcgaaaaatt tgtggaatta accgatatcc tttctgcaaa tgaaattaaa
     9961 aatgtagcaa tcattactaa aaaagaaact gctccagcac cttcaagcac acctggtagc
    10021 cctgcacaag tgccagcagt cgcaccttaa atagggtaaa caggtatgaa aaaaaaacat
    10081 tctcgtatcg gcttattggc atctttggct attcacactg ccttaattgg tggcactttt
    10141 gcttggttac ataaccacaa agtggaaaaa attgccgagc aaaactctct ttctatggaa
    10201 atggtggcag cattattaga gcaacctcag gttgccgttg ctccggatcc tattaccgaa
    10261 gaggtcaaag aaatcgaacc ggagaaggca gaagtaccac ctgaacctaa gcttactccg
    10321 gagccaactc cagagccgga ggcaattcca gatcctacgc taaatccgaa aaaggaaaaa
    10381 ccgaaagaag aaaagcgtaa agagcgacac caccataaac ataagcatcg tcacaaagag
    10441 aaaagggaag agctacaaga gcaagaaaaa ccgaaagata agcctaaaga gcgcccgaaa
    10501 catcatcaca agcatattaa agcattagag cgcgggccag agataaaaca aggtattgtc
    10561 gctaaagcga ttccaaatgc ggctgaaggt gaaaaagtgg ttgcgggggt tgttggaggg
    10621 caaaaaaacg gttcaccaaa ttcaacctca actacaggtt cagcaaatac tggggctagc
    10681 agtggtaatg ccagtgaact tgctgcttat aaagtcgcat tacagcgagc attacagcgt
    10741 aaggcgaata actcttaccc tcagcgtgaa aaaatgatgc ggaaaaccgg tacagttacg
    10801 attaaattta ccattacatc gtccggttca attacaaatg tatccgtact caattcatcg
    10861 ggaaatagta atttagataa cgctgcggta cgcagtgcag aaggtttgag tatgcctccg
    10921 ccaccggcag gcttccctcc tacggtaaca gtaccggtaa gatttgccct tgaataaaaa
    10981 cagccctcaa aagcaatgta cttttgaggg ctttttattg caaaaaattg actaaaaatg
    11041 accgcttact gcttgcgaat atcgccattt ctcacattcg gactcacttc acccgtacga
    11101 gtttctgtgc ttaacgaggt agaatttact ttcgtaaaag tataatccgc tttgctgaat
    11161 tcacctgttt gattatttaa gaagaaattg cggtactctt ttacccataa tgccgttgcg
    11221 ccacaaactg ccacaggcat aactactaaa ttcacaaatg gaatcatcgt gaataggctc
    11281 actaaagcac caaaggtaaa atttaaagtg cgagactgcg acaacgcatt tcgcatacgc
    11341 tgaaaactga ttttatggtt atcaaacgga tagtcacaat attgaatggc gatcaaccaa
    11401 gcaccgaaga taaaagtcag cacaggtgct acggtttgcc caaccacagg caaaaagcct
    11461 aatacaaaaa gagcaatcag ccttggaatg ctatacatca ttttttgcca ttctcgtttc
    11521 agcattcgag gcacatcttt taacattgca ccgaatgaca tatcgcccaa aggctcgccg
    11581 gtaagttgca gttcgacttt ttctgctaat aacgcattaa agggagcagc aacaaagtta
    11641 gccaaggtag taaaagcaaa ataaaatccc actaatatca tcaaaaaaat cagtggaatc
    11701 agtacaaagc taagccattc cagccagctt ggcagtaaca tatccaacaa gccaccgata
    11761 ttggcaaaaa atccccaaat cagccctacc atcagcacgg tattaataag aattgggaaa
    11821 atcacaaaag gcaaaaattg acgttgtaac aataaccgcc agccatatat aaaataatga
    11881 aagcctaatc cgacttgatt ttgcggctca gaaaaaactg aagacataat gattccttat
    11941 tttctatcaa aattaattag aaatatggta agctacgcac attattttcg caaatatgaa
    12001 aatacatttt ttattgatta tttgataaag aggacacaat ggaactgcat attatttttt
    12061 ttattcttgc cgggctactg attgctgtac taattggatt tagcctttgg tccgctcgtc
    12121 gtgaaaaatc aaatattttt tcaaatacat tctcgaccag acctattgct gtgccaccac
    12181 agaataataa aatgagcaat agcatcccaa cctcattaca gccacaaaat gaggattatc
    12241 aagcaatgtc tgtgccggaa gaaaatccgc aacagataca acaggaagtt gaaagctcgc
    12301 tgcaaaatat caaaatcagt ttgccgggcg gaaatcctca gcaacagcct gagcaaattc
    12361 agccgataca atcggtagca gaaccaacgg ttagcactta cggtcagaaa atttctaatc
    12421 agcaacatat ccaatacaat acgccggatt ttgcaaaccc aatggtgaac acagtggtgg
    12481 aagaaacacc tcaagcagta gctatcgaac ctcaagaaac ccaatcggca gaggaagaaa
    12541 atccatttgt aaccctctat ctttacgcac cacaaaatga agctttccgc ggtgattttg
    12601 tagtacatta tttagaagaa gttggcttac gttttggcga acaccaaatt ttccaccgcc
    12661 atcaacatat tgatgattca ttaagtccga ttattttcag tgcagcaaat ttaatgaacc
    12721 caggaacctt tgatttaaat aatatctcaa actttgcgac agctggttta gtgctattta
    12781 tgcaacttcc aaccgaaggc aatgatgtgg ctaatatgaa gttgttaatc agtaacgctg
    12841 aacacttagc agcatcgtta gggggattct tatatgacga taatcaacag ccttttggcg
    12901 aagaatcccg ccaacgttat atgcaacgtg tgatgcacta attgcgaaaa aattaataaa
    12961 tccgaccgct tgtacaagcg gtcttttttg tagagaattt taccaatgtc tttatttaac
    13021 caaacctctt tatttgaaga gaatgccacg cccgagttag tcgagaaaat cgaaactatt
    13081 cgccaaacat tgcgtcaata cgagtatgaa tatcacgttt tagataaccc aagcgtaccc
    13141 gatgccgaat acgaccgttt aatgaacgag ctgaaaaatc tggaatggca gcacccggaa
    13201 ctgattagtg ccgactcgcc gactcaacgg gttggtgcca aaccgctggc aggctttgct
    13261 caagtcaccc acgaaatccc tatgctttcg ttggataatg ccttctccga tgaagactta
    13321 gatggctttt tacgccgtat ggaaagctat atcaccgcct ctccttcgca actggaattt
    13381 tgttgcgaac ctaaattaga cggcttggca gtgagtattt tatacgaaaa cggtatactt
    13441 acccgagctg caacccgtgg cgatggcaca accggcgaag aaattaccgc taatatccgc
    13501 accattcgca atattccgtt aaagctcaac acgactaatc cacctgctcg attagaggtg
    13561 cgaggcgaag tctttatgcc acaatcaggc tttaatgagc tgaatgagaa agccttagct
    13621 aaaggcgaaa aaacctttgc caaccctcgc aatgccgcag caggttcgct tcgccagtta
    13681 gatccgaaaa tcacccgcca gcgtccgtta gtgctgaatg cctacggaat tggggtgtat
    13741 gaaagcgatg acgaactgcc agccacccat ttcgaacgtt tgcaatggct gaaatcgctt
    13801 ggtattcctg taaataatga aatccgcttg gttcaaggca aagctgctct cttggcttat
    13861 tatgcggaga ttcaggctaa acgcccaaca ttaggctatg atattgatgg cacagtattg
    13921 aaagtaaatg acattgccct acaagagcaa ctcgggttta tctctcgctc ctctcgttgg
    13981 gcgattgcgt ataaatttcc ggctcaagaa gaaatgacaa tcctcaaaga agtggacttc
    14041 caagtgggaa gaacaggggc aatcacccct gtggcgaaat tagagcctgt ttttgtcgct
    14101 ggcgtaacgg taagtaacgc aacgctacac aacggtgatg aaatcgagcg acttggtatt
    14161 gtgattggcg atacggtaat tattcgccga gcgggcgatg taattccgca aattacaggc
    14221 gtgatgttag aacgccgccc ggaaaatgca aaaaaaattg aatttccgac cgcttgtcct
    14281 atctgtcact ccgctgttac tcgggtagaa ggcgaggcag tagcacgctg taccggtggt
    14341 ttattctgcg aagctcaacg taaagaagcc ttgaaacatt tcgtttcacg caaggcaatg
    14401 gatattgacg gcgtaggcga aaaactaatc gagcagttaa tggctcgaga gctgattgaa
    14461 acgcctgccg atctgtttaa gctcgatcac actaccctaa tgcgattaga gcgaatgggg
    14521 gaaaaatcgg ctcaaaatgc tctcaacagc atcgaaaaag caaaaaacac tactcttcct
    14581 cgctttttat tctcgttagg tattcgtgaa gtgggcgagg caaccgctct caacttagcc
    14641 aaccattttg gtagcttaga ggcgatccgc caagccactt ttgagcaatt aaaagaagtg
    14701 caagatgtgg gcgaggttgt tgccaaccgt attgtcagct tctggcaaga accgcataat
    14761 gtggaagtgg tggaagattt gatcgctcaa ggtgtacgtt gggaaaacgt tgtgaaagcc
    14821 gaaattgtag ataacccgtt aaaagataaa aacgtggtct taaccggcac gctaacccag
    14881 ctcacccgtg atgaagccaa agccctatta caaagtttgg gctgtaaagt ctccggctcg
    14941 gtttccagca aaaccgatta cttaatcgcc ggcgaaaaag ccggttccaa gctggcaaaa
    15001 gctcaagagt tgggaattca gattttaagc gagcaacaat ttattgagct tactcaacat
    15061 taacaaacaa aggggcagat gattgaaatc tgccccttat tctatctatt gaatgcttaa
    15121 aagcattaac caatcaattt aaactgctga gctaaaaaca gtaacgtaaa gctagttaag
    15181 taaattaagc cgataactgc caaccaaaat aaccagcctt ttgcacgatg ctcacctttt
    15241 agcactaaag agaaatttaa ccacgcaaaa acaggggtag aaacaaatga tgaaatcatt
    15301 gcaaattgta acattttcgc cacatcactc ataaattggc taataattaa aatgccgatg
    15361 agtgcagtta ccgtcatcca aatacttaat tctgtttgtg aatgttgctt acgcccgcta
    15421 attaaacgca acgcttctgc attcgctcgt gaatatccat caataacagt gatcgttgtg
    15481 ccgaacatac acataaatgc aataaatgcg attaaaagct tagaccagtc accaatcgca
    15541 aaagcataca ttttgattaa ttgagcaata taggcaacac cggcttgttc tactttctca
    15601 cctgaaccgt actgaactaa cgcacctaat gctaaaaaaa caatcgccaa aattgccgtg
    15661 ccgatataac ccacattaaa atcaaaaata ccgtcctcat aattcacttt acttaaacgt
    15721 tttttcgcaa taacccacat tgagttaatg gcagaaattt caattggtgc aggcatccag
    15781 cccattaatg caacgatgaa cacaagtgct gctaaattcc acggcgaagg ctctacgaaa
    15841 tctggagcaa tttcaacgcc accttttaaa gcagcaatga tcacggcaga taccgtagag
    15901 atggttaaag caatcataat ccatttagat aatgtatcta agaatttata ttgccctaga
    15961 agtaaaatac cccaagtgac cacaatcaca atagttcctg ccattggaat gcttaaatct
    16021 aacggaatac ctaaagcaga aaaaataaat tttagaatcg ctgctgaaac aatcgccacc
    16081 gcagctgtgt taatcattgc agcaaaaacg ttaaggataa agaaaataat aagataaaac
    16141 tttccttttt ctttgtagcc ttccaataaa gttttaccgc tagctaaggt atattgcaca
    16201 ccaaagcgga aaaacggata tttaaataaa ttggctaaca gaataataat cgccagctgc
    16261 cagccataaa tcgcaccaga ttgtgtagag gcaataatat gcgaaccacc cactgccgca
    16321 gatgccatca aaatccccgg ccccattgca gcaaatttac tttgccaagt tgaatgttct
    16381 atttgttgtg tcatatagct ttccttatca cattactatc aaaacaagat ggttt
//
LOCUS       DANLXK010000049        16335 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.049, whole genome shotgun sequence.
ACCESSION   DANLXK010000049 DANLXK010000000
VERSION     DANLXK010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16335
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            130..2352
                     /gene="glgB"
                     /locus_tag="PXD88_001317"
     CDS             130..2352
                     /gene="glgB"
                     /locus_tag="PXD88_001317"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL6280896.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            2376..4388
                     /gene="glgX"
                     /locus_tag="PXD88_001318"
     CDS             2376..4388
                     /gene="glgX"
                     /locus_tag="PXD88_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL6280897.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            4381..5694
                     /gene="glgC"
                     /locus_tag="PXD88_001319"
     CDS             4381..5694
                     /gene="glgC"
                     /locus_tag="PXD88_001319"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL6280898.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            5817..7253
                     /gene="glgA"
                     /locus_tag="PXD88_001320"
     CDS             5817..7253
                     /gene="glgA"
                     /locus_tag="PXD88_001320"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL6280899.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            7348..9848
                     /locus_tag="PXD88_001321"
                     /pseudo
     CDS             7348..9848
                     /locus_tag="PXD88_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(9930..10646)
                     /gene="trmJ"
                     /locus_tag="PXD88_001322"
     CDS             complement(9930..10646)
                     /gene="trmJ"
                     /locus_tag="PXD88_001322"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL6280900.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            10826..12364
                     /gene="pntA"
                     /locus_tag="PXD88_001323"
     CDS             10826..12364
                     /gene="pntA"
                     /locus_tag="PXD88_001323"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL6280901.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            12379..13824
                     /gene="pntB"
                     /locus_tag="PXD88_001324"
     CDS             12379..13824
                     /gene="pntB"
                     /locus_tag="PXD88_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL6280902.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(13891..14817)
                     /locus_tag="PXD88_001325"
     CDS             complement(13891..14817)
                     /locus_tag="PXD88_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6280903.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(14927..16042)
                     /gene="asd"
                     /locus_tag="PXD88_001326"
     CDS             complement(14927..16042)
                     /gene="asd"
                     /locus_tag="PXD88_001326"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL6280904.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
BASE COUNT         4702 a         3134 c         3720 g         4779 t
ORIGIN      
        1 agattaaaac gattttattt tgtgatttag ctcaaaaaat ggcgtaaatc cacttctttt
       61 atttctattt agtgatagag tgagaactat tgaaatttaa gtattaaacg ctttaagcaa
      121 ggagtgccga tgcaagacta tacttattct gaaaaagatg ctttttttgt tgagcgactt
      181 tcttcgggtt cttgtaatga tcctttctcc tacctaggta ttcaccctag caataacggc
      241 gttattatta gggtatttct tccttctgcc atagcttgcc aagtgatcga tttaaacgga
      301 aagcctgtgt catcaatgct aaaaattgat gatagaggct tttttattgc agagctgatt
      361 ggtaaaaaaa cagatttttc ttaccgcttg ttggtggaat accctgattc aacggtggat
      421 atagaagacc cttaccgttt taaaacccat attcaagagc ttgataattg gttgtttgcg
      481 gaaggaaaac aacttcgccc gtacgaaaaa ttaggcgcac atttagtcac acaaaatgaa
      541 gttgggggtg tgcattttag cgtctgggcg ccgaacgctc agcgggtttc cgtggttggg
      601 gatttcaacc actggaacgg cttggtacat tcaatgcgat tccaccccga ttccggtatt
      661 tgggatattt tcctgccgaa tgtgaaaaaa ggggagtgct ataaatttga agtgttggat
      721 cgaaacggcg tgctacggtt gaaatccgac ccttacgcct ttgcctccca attccgccca
      781 gaaaccgcat ctattgtttc cggcttgcca agcattgtgc cagccgagaa aacctgccgt
      841 aatgcgaatg ctcccgataa accgatttcc atttatgaag tgcatttagg ctcttggcga
      901 cgcaacattg aaaacaatta ttggcttagc tatgaagagc ttgccgatga actcattcct
      961 tatgtgaaag atatgggctt tacccatatt gaattgctgc ctatttccga atttccgttt
     1021 gatggctctt ggggttatca aaccaccggt atttattcgc caaccagccg ttttggtacg
     1081 cctgagggct tgagttactt tatccaaaaa gctcacgata aaggcattgg tgtgattctt
     1141 gactgggtag tggggcattt tccggtagat gaacacggct tggtttattt tgatggaacg
     1201 catttatacg aacattccga tccgaaagag ggctaccaca aagattggaa taccttaatt
     1261 tttagctacg gcagaaatga ggtgagcaat tatttgtctg gtaatgcact ttattggatt
     1321 gagcgttttg ggattgatgc gttgcgggtg gatgcggtgg cgtcaatgat ttatcgtgat
     1381 tactcacgtt cagacggcga gtggattcca aataaatatg gcggacgtga gaacttagag
     1441 gcaatcgact tcttacgcca caccaataat attttgagag acgaaagcca aggcggtgcg
     1501 agcattgcag aggagtccac ttcttttgcc ggagtgtctc actcaactga aagaggcggt
     1561 ttgggcttta attataaatg gaatatgggc tggatgaacg acactttacg ctatatgcaa
     1621 aaagatccaa tttaccgccg ttatcaccac aatttaatga cttttggtat gacctaccaa
     1681 tacagcgaac agtttgtgtt accgctttca cacgatgaag ttgttcacgg caaaggttca
     1741 ttgctgaata aaatgccggg ggattgctgg caaaaatttg cgaacttacg agcctattat
     1801 ggctatatgt ggggctatcc gggcaaaaaa ttgctcttta tgggcaacga gtttgctcaa
     1861 ggtaaagagt ggaattttgc cgagagctta gattggtatt tactcgggga agaagggggc
     1921 gaatggcata agggcgtatt gggttgggta aaagccctta accatttata cacccaaacc
     1981 cctgcactgt ttgagcaaga ttacaatcct gaaggttttg agtggttagt ggtggacgat
     2041 cacgataatt cggtgtttgc ttttgagcgt aaagccaaaa atggcgattc ggtgattgtg
     2101 gtgagtaatt tcaccccgat tgtgcgtgaa aattaccgtt ttggggtgaa tgaattggca
     2161 gaatatcagg aaattctcaa ttctgattta gcttgttatt gcggtagtaa tgtcagcaat
     2221 gcaaaccgat ttgccagcga gttaattgca tcgcacggta aagcctactc cttgagcatt
     2281 actttgccac cgctatcgac tatcttcctc aaaagagccg cagacaaaaa aacaaaacaa
     2341 aacaaaacat aacttaaaga aacataaaaa ataatatgca ctattttaga ggtaagcctt
     2401 ttcctttagg caataaactt gatagacaag cgggtgaatt tggcacaaat tttgccattg
     2461 tttcgcaaaa tgcaaccgct attgagttat gtctttttga tgaaaatcac cacgaaaccc
     2521 gtattccgat gttttcttcc ggagatactt ggcacatttt tgtagcaggt gtacaagcag
     2581 ggacaaaata tggctacagg gtgaaaggca tacaagatga acaagccggt ttgttattta
     2641 atccgcaaaa attattgact gatccttacg ctaaagcgat tgaagggaag ccggatttaa
     2701 gtagtgcaga ggcagccgct tggtataaat ggaacgatga acgggataat gcctctcttg
     2761 cacctaagtc tatcgtgatt gatgagcatt ttgattggga aaatgatagc cagttattca
     2821 ctccttgggc agagactatt atttatgaaa tgcaggtgaa aggttttagt cagcggaact
     2881 ttcagattcc aagcgacatt cgaggcactt ttgccggttt ggctcaccct gtttcgatag
     2941 actatttaaa aaccttagga atcaccgcag tagaacttct acccgttact taccatattg
     3001 atgaaaccca tttgcagaaa caagggcttg tgaattattg gggctataat gtattaggta
     3061 attttgctat tgatccgaat ttagcagcag ataagcaaaa tcctcttaaa gagtttaaac
     3121 agctcgtaaa aacattacat caagcacata tcgaagtgat tatggatatt gtgtttaacc
     3181 acacagctga gagtgataaa aacgggccga tgctaagttt tagaggcatt gacaatacag
     3241 cttattggct agataaacag ggcgaatacg aaaattggac tggctgtggt aataccttaa
     3301 atttgagcaa tccttatata ctctgctggg caatcgattg cttaatctat tgggtggagg
     3361 agtgccatat tgatggattc cgctttgatc ttgcctcaat tctaggtaga acaccgagtt
     3421 tttctgaaaa agcagatttt ttcacagcac ttaaaagcca ttctaaatta acacatatta
     3481 agttgattgc tgagccttgg gatattggtg tagaaggtta tcaattaggg caattccctg
     3541 agccttttta tcagtggaat gattgttatc gtgatgatat acgccgtttt tggttacaaa
     3601 accaaggtga ttgggggctt ttggcacggc gattggcagg aagtgatgat gtgtttacta
     3661 aatattccgt ttcaaaaagt atcaatttta ttacggcaca cgatgggttt acgttacaag
     3721 atctcaccag ctatcagcaa aaacataatt gggcaaatgg tgaacaaaac cgagacgggc
     3781 ataatagtaa ctacagcaat aaccacggtg ttgaagggca gacagcagat gaattggtaa
     3841 aaaaacagag agaaatcacc gcttgtagtt tgcttgctac gctcttttta tcggctggtg
     3901 ttccaatgct tttagccggt gatgaaattg gacatagtca acaaggtaac aataatagtt
     3961 attgccaaga taatgagatc acttggctag attgggaaaa tatgaatcac acacggctgg
     4021 attatgttcg tagtttaatc cggttgcgta aaaaaatcgc tttgctttcc aagcagaata
     4081 attggtggca agaggattcg gtacaatggt tgaatccttc tgctcagcta atgaatattg
     4141 acgattggca taatcaacat aatgggcttg tcgttttatt acaggaagaa tggctgcttt
     4201 tattcaatgc taatcgacaa cctcaaccgt ttttactgcc acaaggcaac tggaaagttg
     4261 tgttggagca ggctcaaggt attttgatga cagacacgca agcggttacg ctcaataata
     4321 tgggtgtatg cgtacttcaa aaaagtgatg taatgttcgc taataaattg gagacacaat
     4381 atgcttaacc aagaatcaac ggctcttgtt gcaagacaag atttaaccaa cgatacctta
     4441 gtattaattc ttgcaggagg acgaggttct cgcctatacg aattaaccga taaacgtgca
     4501 aaaccggcag tctatttcgg tggtagccgc cgtattattg attttgcgtt atcaaattgt
     4561 attaactcga atttattaaa aatcggggtg attacccaat atgcagcaca ctctttgttg
     4621 cgccatttac aacgtggttg gtcattttta ccttatgaac gtaaccaata tattgatatg
     4681 ttaccggcac gccaacagct agatgaaaac acttggtatc gtggcacagc ggatgcggtg
     4741 tatcaaaata tggcgatgat gaaatcgcac tatagaccaa aatatgtggt gattttagca
     4801 ggggatcata tctataaaat ggactacact caaatgctga aagatcacgt cgatcaaggt
     4861 gcaaaatgta ctgtaggttg tatcgaagtg cctcgctcgc aagcaacaga gtttggggta
     4921 atggcggtga atgaaaagct gaaagtgaaa gagttcgtcg aaaaaccagc tgatccacct
     4981 gcaatgccgg gaaaaccgga ttcctcgcta gcatcaatgg ggatttatgt atttaatgca
     5041 gattatctat atgaaatgct ggaaaaagaa gcctctacac cgggaacctc acatgatttc
     5101 ggtaaagata ttattccaaa agcagtagag caaggtgtgc tatatgccca cccatttgaa
     5161 cgttcttgta aagggcgtaa tgccagtggg gcaatttact ggcgagatgt cggtacgatt
     5221 gacagctact gggctgccca tatggattta gtttctgaag atccggaatt agatttatat
     5281 gatgaatctt ggccgattca cggtcgtccg caacaaactg caccggcacg ttttttctat
     5341 aatcgtgcgc gtgccagaac cctagataac tcactgattg cgggtggttg tgtgattacc
     5401 gatgcggaaa tcagtaattc ggtcttattt aaccgtgttc acgttgaagc ggagtcggtg
     5461 attgaacaca cagtgatttt accgcaggtg actatcggta aaaattgcgt aattaagcgc
     5521 gctgtgattg acagacattg tgtaattcct gatggcttag aaattggtgt aaatgccgaa
     5581 gaagatgcga aacgttttcg tgtcagcaaa aatggcattg tattagtgac acagtcaatg
     5641 ttagataaat tagcgggaaa agaagctaat tcggatatta aatatacaat ttagtaagag
     5701 atgatataat gcttcgagtt tgtcatttga ggtcgcaagc tcgaagtatt gttatgatta
     5761 aagcgcttca agcggtctta tttttcaact attttacaca tagaaaacgg ttaaaaatga
     5821 aagttttaca tatttgctct gaaatgtacc ctttaattaa aacaggcggt ttagctgatg
     5881 taatgggggc attgccattt gcgcaacagc aagctggtaa tgatgtcaga gtgttaattc
     5941 cttattaccc gaaagtcgcg caaactttag gggaaacggt agaagttgct actatcggca
     6001 cttttgccgg aacagtctct gttcgatttg cttattttaa tggcttaggc gtttacgtta
     6061 tcgatgcgcc tcatttattt atgcgtgatg gtaaccctta ccacgacagc aattatcaag
     6121 actatccgga taactataaa cgctttgctt tattaggtta cattggggcg caattagccc
     6181 aaggtttgga tcattggtgg ggaaccgctc aagttttaca cgcacacgat tggcaagcag
     6241 ggcttgcttg tgcatatctt aaaagttggg gaagcaatgt aaaaacgctc ttcactattc
     6301 ataatattgc ctatatcggg cgctttaatg ccttccattt agcagagctt ggcttacctt
     6361 gggaattttt ccacgccgaa ggcttagaat tttacggtga aatttcttac ctcaaagcag
     6421 gtttgtattt tgctgatcgc attactaccg ttagcccgac ctatgctcgt gaaattactg
     6481 aggaaattgc cggtgcaggc ttgcatggtt tactggcaac ccgtcaatat caaggtagat
     6541 tgcgtggcat tttaaacggg gtcgatgctg aggtgtggaa tccggaaacg gatacacata
     6601 ttgtggtgaa ttatcgtgcg aactatatgc acggtaaagc caaaaataaa gcggaactcc
     6661 aacgaatttt tggtttgcca gaagacaaag aagcattatt gatggtaatg gtgactcgtt
     6721 taactgagca gaagggggca gatttcttac tcgccaatat agatacctta atgcaacata
     6781 aggtacagat tattgtattg ggaagtggat cgccagattt agaaaatgcg ctacgttatt
     6841 tccaacacaa atacccgaac caaattgggg tgaaaatcgg ttatgacgag gctttatcgc
     6901 accaaattat tgcaggtggt gatctgattc tagtaccaag ccgttttgag ccgtgcggat
     6961 taactcaact ttatgggctg aaatatggca ctttaccgct ggttcgccgt accggtggct
     7021 tagctgatac ggtggtagat agccataaag agagcattga aaaccgcagt gccaccggat
     7081 ttgtatttga ttacccagat gcacctgcgt ttttagaggc agctatgcgg gcaatcagct
     7141 tatggcagaa acaaaaattg tggtcgagcg ttcgccagaa tgcccttgct caagattttg
     7201 gttgggcaaa agtggcagaa cagtaccaaa atttatacca cgaaattatt taatttgtat
     7261 tcacaacatc atttcaagcg gtcgaatttg cggatttttt tgtaaaaacg accgcttgca
     7321 atattaaaaa ttaggagaat ttactcaatg agcaggcagt cattaagccc agaaatgatc
     7381 aaaaatgtta aaaatgcgat tttgcacaaa atggtgttcg ctttaggggt cgaaccccgt
     7441 gatgccagta agcgtaactg gctcaatgca accttacgtg tagtgcgtga tttatctacc
     7501 gaagattggt tacaaacccg ccgtagccag gttgcaaatg gtagccgccg tgtttattac
     7561 ctttcaatgg aatttttaat ggggcgtacg ttcagtaacg caatgatttc tgaaggtgtg
     7621 tatgagctta ttggcgctgc gttaaaagag ttagggcaag atctggaaga gattatcaat
     7681 gaagagggcg tccgggctta ggtaacggtg gcttagggcg tttagccgcc tgctatatgg
     7741 acagccttgc cacaatgaaa attccggcaa tcggctacgg tattcaatat gaatacggta
     7801 tgttccgcca agaaatccgc aacggggagc aaattgagca acctgatgaa tggttagaga
     7861 atgaatttgt gtggccatat ctacgttcaa gtaagcgttt cccggtacgc tttggcggta
     7921 aaacttggcg tgagggcaaa aaagtagtat ggcagccgga agaagaaatt accgctcaag
     7981 ctcacgacca actgatcccg ggctttgaga ccacctcaac taacagctta cgtttatggt
     8041 ctgcacacgc atcgggtaga gggtttggct tatctgattt taaccgtggc gattattttg
     8101 cagcaatggt taaacaaaac agctcggaaa acgtctctcg tgtgctttat ccggacgatt
     8161 ctacctataa cggtcgtgaa ttacgcttac gccaagagta tttcctttgc tcggcatctg
     8221 tacaagatat tatccgccgc cacgaagcgg agttcggctc ttgtgtgaat ttagccgaca
     8281 aagtggcaac tcacttaaat gacacacacc caacccttgc ggtgcctgag ttaatgcgta
     8341 ttttaattga cgaaaaaggc tatggctggg aacaagcgtg ggcgatgact cgtaaaattt
     8401 tcttctacac caatcacact ttgatgagtg aagcgttaga aacttggccg gtagaaatgt
     8461 tagcccgtgt gctaccacgc catttagaga ttattttcga cattaacgaa tatttcttag
     8521 aggaagtgcg tagccaattc ccggaagatc acgatttgat ttctcgtgtt tccttaattg
     8581 atgaacaagg cgatcgccgt gtgcgtatgg cgtggcttgc ggtagtcgcc tcagcgaaag
     8641 taaatggtgt ggcgaaaatt cactcggatt taatggttga atctattttt gccgattttg
     8701 cccgtattta cccaaatcgt tttactaatg tgactaatgg ggtgacacct cgccgctgga
     8761 tcaaaattgc caacccaggg cttgctaata ttttagataa atgtatcggc aataagtggc
     8821 tgactgattt aagtgaattg gaaaaattca acgtgtttgt tgatgatgct gatgtgcaag
     8881 cacaggtggc agcggtgaaa gtagaaaaca aacgtcgctt agccaaatat gtcgaagaaa
     8941 ctcagggaat taaacttaat cctgaagcga tttttgatgt acaagttaag cgtattcaca
     9001 agtataaacg ccagcaaatg aacgtgttgc atatcatcac gctttataac cgcatcttga
     9061 aaaacccgac tgctgattgg acacctcgtg tgtttatctt cgcagggaaa gcggcaagtg
     9121 cttattatgc ggcgaaaaaa gtgattcgtt tgattaatga tgtggcaaat gtggtgaata
     9181 atgaccctcg cattaatgat ttaattaagg tggtgtttat tccgaactac ggtgtttcat
     9241 tagcacaaat gattattccg gcagctgatg tttcagagca aatttcctta gcgggtacag
     9301 aggcctccgg aacctctaat atgaaatttg ccctcaatgg tgctttaacc attggtacat
     9361 tagacggtgc gaatgtcgaa attttagatc acgttggtaa agagaacatc tttattttcg
     9421 gtaatgaagt agagcaggtg gaagagcttc gccacaacgg ttactcaccg tatcactact
     9481 acgaaaaaga cagcgaattg aatgaggcaa tttcacaaat tctaaacggt aaattctcac
     9541 cggaagatcc gtatcgctat caagatttga tcttaaattc aggtgactac taccaagcct
     9601 gtgccgatta tcgtagctat gtggaggctc aagaaaaagt ggctcaagcc tatcgtaaca
     9661 agaaagcttg gacacgttca gccatcatca atattgccaa tatgggctat ttctcctcag
     9721 accgctcggt gatggattat gcgaaaaata tttggcatat cgaaccgatg agcgaagaac
     9781 aattaaaagg cgattctaca atgggcagta ttattgaaag ttcaaataaa ctgttgaatt
     9841 taaaataatg atttagagaa aacgagtaat cttaccgttt ttgttttagt cagggatttt
     9901 gcaaatttct actaaaaatt aaccgcttgt caatttgcct tctccaccgc cgtgagcatt
     9961 cccctcagta aattcagctc attagtttcc agttcggcac gttggtataa acggcggagt
    10021 tttagcatca ctgaatcatt gcggataaag cctaattcgg tatataagcg ttcggtgtga
    10081 gcaaagaaat gctctaaggc ttgagcggtt gggtaatcct tatctgctgc aagcggttgt
    10141 ttttcgccag aattttgcaa ataagccatt cggatttcat aacttgcgag ctgtactgcc
    10201 attgccaaat tcagagaacc ataatcagga ttggttggga aattcaaatg gtactggcat
    10261 ttcaataatt cttcgttggt tagccccact cgctcacgtc caaatacaat cgccactttg
    10321 ccaagattgg ttcgatttac cactaattca ccacagtctc ttggttcaat cagggtattt
    10381 tgcaaatggc gaagtctggc actggtgccg atcaccagtt ggcaatcggc aatggcttca
    10441 tcgaaagtgg cgtagcattg agcgttatcc aacacatctt ttgccccagc agcaagggct
    10501 tcggcttgtt catcaagcgg ttgttttggg gcgactaatc gcaaatgggt taagcccatc
    10561 gttttcattg ctcgggctgc ggaaccgata tttgccggga gtgaagtttc aacaagaatg
    10621 atctgaattt ggttgagaat ctgcattggt tttgtttctt ttttgttaaa tttagcctgt
    10681 taatagtgta gcaaaaattt agcctgctta aaatttgaaa aaatgggaaa taatcggttt
    10741 aattgggcat aattttttac ctatttgttt tatttagtgg tacatttaga gcgtttttaa
    10801 tcacaacaac catacaggag tctttatgct tattggtgta ccaagagagc tgttagacgg
    10861 tgaaactcga gtggcggcaa cgccaaaaac cgttgagcag atcaaaaaac ttggctttga
    10921 cgtacttgtg gaacaagacg caggttttaa agccagtttt gaagataata catttttaaa
    10981 tgcaggtgca aatatcggca cacaacaaga agtttggaat gcagacatta tttttaaagt
    11041 gaatgcgccg acagaagctg aaattgagtt aatcaaagaa ggggtaacct tagtcagctt
    11101 tatttggccg gcacaaaatc cacaattgat ggaaaaattg cagtctaaga aaattaatgt
    11161 gttggcaatg gacgctgtgc ctcgtatttc ccgtgcccaa gctctcgatg ctttaagttc
    11221 gatggcaaat atttcgggtt accgtgcggt gatcgaagcg gcaaacgctt ttggtagctt
    11281 ctttactggg caaattaccg cagcaggtaa agtaccaccg gcaaaagtgt tggtaattgg
    11341 agccggtgtt gctggcttgg ctgcaatcgg ggcggcaaat agcctggggg cgattgtgcg
    11401 tgcctttgac tctcgtcctg aagtaaaaga gcaagttaaa tcaatggggg ctgatttcct
    11461 cgaaattgat tttgaagaag aaggtggctc aggtgacggc tatgcgaaag tgatgtcgga
    11521 agagtttaac cgtcgtgcaa tggcgttata tgccgagcaa gccaaagagg tggatattat
    11581 tattaccacc gctgccattc cgggcaaacc tgctcctcgt ttaatcacta aagagatggt
    11641 tgattcaatg aaaccgggtt cagtgattgt tgatttagcc gctgcaaccg gtggtaactg
    11701 tgaatacacc aaagccggcg agattgtggt gaccgataat caagtgaaag tgattggcta
    11761 taccgatttt cctgcacgtt taccaacgca atcttcgcaa ctttatggta ctaacttggt
    11821 gaatttactc aaactgttag caccaaataa agatggtcaa attgagatta attttgatga
    11881 tgtagtgttg cgtggcgtaa cggtggtgcg tgacggcgaa ttaacttggc cggctccgcc
    11941 gattcaagta tctgcccaac tgcaaaaaca agcagccgca ccacaagcgg tcaaaaaaga
    12001 ggaaaaacct gcagaccctc gagtgaaata tggcgtgatg gcagcagcag gtgtgctgtt
    12061 cctatggctt gcatctgtgg ctccggcagc gtttttatcg cattttaccg tattcgttct
    12121 cgcttgtgtg gtagggtatt atgtggtttg gaacgtcagc cacgcactac ataccccatt
    12181 aatggcggta acaaatgcga tttcagggat tatcatcgta ggtgcggtat tacaaattgc
    12241 ccaaccgacc ggtaatttct ttattgatat tttggcattt attgcgattt tggttgccag
    12301 catcaatatt tttggtggct ttaaagtaac gcaacgtatg cttgcaatgt ttagaaaagg
    12361 ttaaggagaa acgaaactat gtcttttgga tttgtgactg ctgcgtacat tattgcagct
    12421 attctcttta ttatgagctt agccggtctt tctaaacacg aaaccgccaa agcaggttgt
    12481 tggtatggga ttgtgggtat ggcgattgct ttagtggcaa ccattttcgg cccgcaatca
    12541 catggcacga tttggatctt aatcgcaatg gcaatcggtg gattcatcgg ggtgaaaaaa
    12601 gccctaaaag tagaaatgac cgaaatgcct gaattagtgg caattctaca cagctttgtc
    12661 ggtttagcag cggtattggt tggttttaac agctacggac ttcataccaa tgcattaatg
    12721 cctgcaaatt tagatgaaac tgcacaagcg gcatttttag cggaacaagc cactcttgcc
    12781 aatatccaca atgtggaagt gttcttaggt attttcattg gtgcggtaac cttctccggt
    12841 tcattggttg cctttggtaa actaagcggt aaattatttg gtcgtaaagt ctcttctgca
    12901 gcactgaata ttccacataa acacaaatgg aatttggcag ccattatcgt ttctgttttt
    12961 ttgatgatcg tgtttttaaa taatccgcac aatatcttcc ctgtgctgat tatgacaatt
    13021 attgcgttag tcttcggctg gcacttagtt tcttctattg gtggggcgga tatgccggtg
    13081 gtagtttcaa tgctgaattc ttattcaggt tgggcagccg cagcggcagg ctttatgcta
    13141 agcaacgatt tattaatcgt aaccggtgca ttagtgggat catcaggtgc tatcctttct
    13201 tatattatgt gtaaagcaat gaaccgctca ttcattagcg tgattgccgg tggttttggc
    13261 aatgaagttc agtctggcaa aggtgatgaa gaatacggtg aacaccgtga aacgaaagcc
    13321 gaagaagtgg cagaaatgct gaaaaatgca agctctgtga tcatcacgcc gggttatggt
    13381 atggcagtgg ctcaagcaca atatccggta gcggaaatca ccgcaaaatt gcgtgaaaaa
    13441 ggcgtgaatg tgcgttttgg tattcaccct gtggcagggc gtttaccggg gcatatgaac
    13501 gtattattgg cggaagcgaa agtaccttat gatgtagtgc tggagatgga cgaaatcaat
    13561 gacgattttg aagaaaccga tgtggtattg gtaatcggtg caaacgatac cgtaaaccct
    13621 gctgcattag acgacccatc aagccctatt gctggaatgc cggtgcttga agtatggaaa
    13681 gcacaaaatg ttatcgtgtt caaacgttca atggcagtag gctacgccgg tgtgcaaaac
    13741 ccactgttct ttaaagaaaa tacccaaatg ctatttggtg atgcaaaaga acgtgttgat
    13801 gatattttac gggcgttaaa ttaaatttaa ataaaaaagc gaacataagt tcgctttttt
    13861 gtgcttaggc taacataaat tgttaatttt ttactctaat accatcaatc cgggaagagt
    13921 cgcaaaactc tgcgatttta cggtatcatg gaaatcatct aagtaggcta gggtagcatc
    13981 ggcttctcga atagcgccat aaagggtgct atatagtcct tgctgagtta tttttcttgc
    14041 caccacatac cccctatcta aatatggttt aaccgcccaa taaggtagtg cagcaatgcc
    14101 tcgccgactt gctactagct gaataatagc aatagttaac tcactattac gccgagtaac
    14161 tttgatgcca gcagggccta atatttttcg cagtaaatct agcatatcat caggtactgg
    14221 ataggtaatt aatgtctcat ctttaaaatc ttcagcttcc catacatctt ttgtggcaag
    14281 agggtgatct ttagagcaaa tagctaccat ttcatatgaa aagagaggtt tgtatataat
    14341 accagcacta tcttcctctt cagcgacaat tgccagatct gcacgatggc ttaatagcaa
    14401 accaaccgta tcagtatgga aacccgatac gatatctaat tcaactagag gccaatgttg
    14461 acggaaagta tccattgccg gcattagcca atcaaaacag gtatggcatt ctactgcaac
    14521 acgtacctct ccgacttctc cttgtttcac tcgggctaaa tctaattcag cctcaatgac
    14581 tttgggcaaa atatcgtagg ccaacttaat taaacgttcg ccagctggtg taaagcgaat
    14641 aggggagctt tttcgctcaa atagcgtaag atcatactgt tcttccagta attttatttg
    14701 gtgtgaaagt gcggattgtg ttaaatggac acgctttgct gcaagagata cgctaccgct
    14761 ctcttttaat gcgattaatg tccgcaaatg gcggatttca agaaaaatcg gtttcataat
    14821 ttattcatct aaaagtgaaa aaagatgaaa ataattataa caaacaagcg gtcaaattct
    14881 gcaaaaaatt tgcaaaatcc aaccgcttgt atagagcagt ggcgaattat tgggttaatt
    14941 gaactaaaat gcggcgaaca ggctctgctg caccccataa taattggtca cctacggtaa
    15001 atgcagctaa gtattctcca cccatcgcta atttacgcaa gcgaccaacc ggcacgctca
    15061 atgtaccggt cactttcgcc ggggtcaatt cacgcaatgt ggtttctttg tcgtttggaa
    15121 ttactttcac ccattcattg tgggcagcaa taatttgctc gatttccgct aacggaatat
    15181 cttttttcag cttaattgtg aatgcttggc tgtggcagcg taatgctcca atacgcacgc
    15241 ataaaccatc aactggaatt gggttatcgc ttaaacctaa aattttatta gtttctgcat
    15301 aacctttcca ctcttcttta gtttgcccgg tttccggtaa taatttatca atccaaggaa
    15361 ttaagctacc gcccaatgcc gcaccgaagt tctcggttgg gaagtcttcc gcacgcattt
    15421 tagccgtaac tttacgttca atatctaaaa tagaagaggc aggatttgct aattcagctt
    15481 ttacgctatc ttctaattca cccatttgag aaagcaattc acgcatattt ttcgcaccgg
    15541 caccggaagc ggcttggtaa gttgctacag aaacccactc gaccaaatct ttctcaaata
    15601 aaccaccgat agccattagc attaggctta cggtacagtt tccgcctaca aatgttttaa
    15661 tgccgttttt taagccttct gaaatcacat gttggttcac cgggtctaat acgataatag
    15721 catcgtcttt catacgtaat gcagaagccg cgtcaatcca atagccgttc caaccggttt
    15781 cttttaattt tggatagact tcatttgtat aatcaccacc ttggcaagtt acgataatgt
    15841 ctaatttttt taattcttca atgtcaaagg cgttttttaa ttcgccggca tcttttccgc
    15901 caaaaacagg ggctttttga cccgcttgtg aagtagtgaa aaaaacaggg ttgatattgg
    15961 cgaagttatt ttcttcaacc atacgatcca ttaagaccga accgaccata ccacgccaac
    16021 cgataaaacc tacattttgc attgtgtttg ctcctaaaaa tgatgttata aagattgtga
    16081 ataaatacag gattttagtg caaaaatcaa tgttttttat tgatttgcaa agttttgaca
    16141 aaatttaacc gctattgtta aaataaaaca tcgattatgg tgtatttttg gaaataaata
    16201 gaatcttata aatagggaaa tgctcacaat ttatgcattc caattgtggt ctaatcaata
    16261 aattttgccg atatatcgat aggaagtaga tgtaattacc taaagtttga tctaggttag
    16321 ttaaatggga ggttt
//
LOCUS       DANLXK010000050        16292 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.050, whole genome shotgun sequence.
ACCESSION   DANLXK010000050 DANLXK010000000
VERSION     DANLXK010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16292
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            298..879
                     /gene="rsxA"
                     /locus_tag="PXD88_001327"
     CDS             298..879
                     /gene="rsxA"
                     /locus_tag="PXD88_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL6280905.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
     gene            879..1496
                     /gene="rsxB"
                     /locus_tag="PXD88_001328"
     CDS             879..1496
                     /gene="rsxB"
                     /locus_tag="PXD88_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL6280906.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            1483..3777
                     /gene="rsxC"
                     /locus_tag="PXD88_001329"
     CDS             1483..3777
                     /gene="rsxC"
                     /locus_tag="PXD88_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL6280907.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            3770..4405
                     /locus_tag="PXD88_001330"
     CDS             3770..4405
                     /locus_tag="PXD88_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL6280908.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            4451..5506
                     /gene="rsxD"
                     /locus_tag="PXD88_001331"
     CDS             4451..5506
                     /gene="rsxD"
                     /locus_tag="PXD88_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL6280909.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            5506..6138
                     /gene="rsxG"
                     /locus_tag="PXD88_001332"
     CDS             5506..6138
                     /gene="rsxG"
                     /locus_tag="PXD88_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL6280910.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            6147..6830
                     /locus_tag="PXD88_001333"
     CDS             6147..6830
                     /locus_tag="PXD88_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL6280911.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            7271..8221
                     /gene="lpxM"
                     /locus_tag="PXD88_001334"
                     /gene_synonym="msbB"
     CDS             7271..8221
                     /gene="lpxM"
                     /locus_tag="PXD88_001334"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL6280912.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            8349..8888
                     /gene="apt"
                     /locus_tag="PXD88_001335"
     CDS             8349..8888
                     /gene="apt"
                     /locus_tag="PXD88_001335"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL6280913.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            8979..11036
                     /gene="dnaX"
                     /locus_tag="PXD88_001336"
     CDS             8979..11036
                     /gene="dnaX"
                     /locus_tag="PXD88_001336"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL6280914.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            11042..11950
                     /locus_tag="PXD88_001337"
     CDS             11042..11950
                     /locus_tag="PXD88_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6280915.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            11952..12713
                     /locus_tag="PXD88_001338"
     CDS             11952..12713
                     /locus_tag="PXD88_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6280916.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            12734..13489
                     /gene="modA"
                     /locus_tag="PXD88_001339"
     CDS             12734..13489
                     /gene="modA"
                     /locus_tag="PXD88_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6280917.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            13673..14365
                     /gene="modB"
                     /locus_tag="PXD88_001340"
     CDS             13673..14365
                     /gene="modB"
                     /locus_tag="PXD88_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL6280918.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            14352..15407
                     /gene="modC"
                     /locus_tag="PXD88_001341"
     CDS             14352..15407
                     /gene="modC"
                     /locus_tag="PXD88_001341"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL6280919.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            15462..15896
                     /locus_tag="PXD88_001342"
     CDS             15462..15896
                     /locus_tag="PXD88_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL6280920.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            15886..16221
                     /locus_tag="PXD88_001343"
     CDS             15886..16221
                     /locus_tag="PXD88_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL6280921.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
BASE COUNT         4591 a         3418 c         3729 g         4554 t
ORIGIN      
        1 gagtgagact ttttaggatt aacttagaaa atcaagctcc tttcaccttt catgctgtat
       61 agcttagtcc ccacattctc cattctacca gagatagaaa caaaggtaac aagatcatat
      121 ttgatatggt atgtttacta gaagtacctc cgatttctta ttgtgaatga gccgaaaaca
      181 agagataata taacgtttat ttttaatgag atgctttaac aaacggtcag attttctctg
      241 ttttttgcaa aataaaatgc gtttttgacc gcttgtatat ttaattttgt ggaatttatg
      301 gtcgattata ttctgttggt catcagcacc gcccttatta ataactttgt cttagttaaa
      361 tttctagggc tttgtccgtt tatgggagtg tcgaaaaagg tggaaactgc tattggtatg
      421 gggttggcga caacctttgt gctgacggtt gcctcgctct ctgcttattt gatggaaacc
      481 tatttgcttg agccgttaaa cgctcaattt ttgcgtacct tggtgtttat tttagtgatt
      541 gcggtgatcg tgcaattaac ggaaatgatt gtgcataaaa ccagcccgac actttatcgc
      601 ttgcttggga tctatttacc gctgattacc accaactgtg ccgtattagg ggtggcatta
      661 ttaaacgtga atttagccaa taacttggtg gaatctgttc tttatggttt tggagccgct
      721 gccggtttct cgctggtgtt agttttattt gcggctctgc gtgagcgttt ggctgccgct
      781 gatgtgcctc gtccgttcca aggagcatca attgctctga ttaccgcagg cttgatgtcg
      841 cttgccttta tgggctttac aggattggtg aaactctaat gcttgatttg ccaattatcg
      901 cttatattct tatcgctatt gctgtgatcg cactgatttt cggggcggtt ttaggctatt
      961 cctcgattaa actgaaagtt gaatccgacc cgattgtcga tcaaattgat gcccttttac
     1021 cacaaagcca atgcggtcaa tgtggctacc cgggctgtaa gccttatgct gaggcgattg
     1081 ctaatggtga tgtgatcact aaatgtgtgc cgggtggaca acctttagtg gtgaatcttg
     1141 ccgaattgct tggggtagaa gtgccgccaa tggaaggtat ggcagagcct gagatgaaag
     1201 tggcttttgt gattgaagat ctctgcattg gctgtactaa gtgcattcag gcttgcccgg
     1261 ttgatgcgat tatcggcacg aataaagcaa tgcacaccat tattccggat ctttgcaccg
     1321 gctgtgaact ttgtgtcgcc ccttgcccga ccaactgtat tgaaatgcga ccaattaaac
     1381 cgacaaccca atcttggaac tggaaatttg accaagattt aattattccg attgtgaata
     1441 ccactgaatt gcagagaaaa ttagttaccg gcggaggcaa aaatgagcaa tcctaattta
     1501 gtgattgagc gaatccgcca aaataaagaa acgggtaaac tgtgggattt cccgggcggt
     1561 attcacccga tggaaaataa atcccaatca aacagcaagc caattcgcac cttaaattta
     1621 ccgaagtttt tctatgtgcc actggttcaa cattctggct gggcagggga attattagtc
     1681 aaagtcggcg atgtggtatt gaaagggcag ccgctcacga aaggcgatca cttccgtcaa
     1741 ctgcccgtac acagcccaac ctccgggcgg gtgattggga ttgagcctta tgtttccgct
     1801 cacgcctcag gtttgcccga aataacggtg attattgaaa ccgatggtaa agataaatgg
     1861 gtggaacgcc agccgattga ggatttttta agcctaacaa gcgatcaaat tatccaaaaa
     1921 gtttaccaat atggcattgc cggtttaggc ggtgcggtat tcccaaccgc aacaaaatta
     1981 agtttggcgg ataaacgctg taaattactg gtgattaacg gggcagaatg tgagccttac
     2041 atcacctgtg acgatcgctt aatgcaagat ttcactgcgg atcttatcga aggtattcgc
     2101 attctgcgtt atgtgcttcg cccggaagaa gtggtgattg cgattgaaga caacaaaccg
     2161 cacgctattc aagctttaga aaccgcttta aaaggctcga acgatatgtt tgtgcgggcg
     2221 atcccgacta aatatccctc cggagcttct gatcagctga ttcaagtgtt gaccggactt
     2281 gagattccgg ctggcaaacg cactattgaa atgggcattg tgatgcacaa tgtcggcacg
     2341 gcgtttgcgg ttaaacgggc aattattgat gatgaacctt tgattgaacg ggtagtgacg
     2401 ctgacaggcg ataaaattcg caacaagggg aacgtgtggg caagattagg cacgccaatt
     2461 cagcacttgt tggagcaggt agattatcaa gccgataaac gctttccggt gtttttaggc
     2521 ggaccgatga tgggctttat tttgcctgca ttgcaagccc cgattaccaa aactgcgaac
     2581 tgcttgattg cccctgatca ttttgaatat gcaccacctg aaccggagcg tagttgtatc
     2641 cgctgttcaa gctgttccga tgcttgcccg gtggggttat tgccacagca actttattgg
     2701 tttgcccgtg cagaagatca cgataaatcg aaagaatacc atttagatgc ctgcattgag
     2761 tgtggcgttt gtgcttacgt ttgcccaagc tacattccgt taatccaata tttccgccaa
     2821 gaaaaagcaa aaatcgagga aattgaggaa aaagcccgca aagcggaaga ggctaaaatc
     2881 cgctttgagg cgagagaagc tcgcttacaa aaagaacgag atgccagaac tgctcgcatt
     2941 agccaagcgg cggaaaaacg ccgtgaagaa gtggcaaatg caggtggtgt tgatcctgta
     3001 aaagcggctc ttgaacgcct gaaagcgaaa aaagcggttg aaacagtcca agaaataccg
     3061 gcagaagtac aggtaaaacc taacggcgag cctgataaca gcgatttaat ggcacaacgc
     3121 agagccagac gtttagccaa acaggcagaa caagcggtcg aaaaatcgga aaatgttaca
     3181 aatgccttga ttggggcaaa taatgatttg cctctacaat caatgaacga aactgcatcg
     3241 gataaatctg taggggcgaa taactattcg cccgaagcag aaagcgaaga cccacgcaaa
     3301 gccgccgttg cggctgccct tgcccgagcc aaagccaaaa aacaggcaca gcaagcggtc
     3361 gaaaaatcag aaaatattac caatgccgtg attggggtaa ataatgattt gcccctacaa
     3421 tcaatgaacg aaacggtatc ggataaatct gtaggggcga ataaccattc gcccgaaaca
     3481 gaaagcgaag acccacgcaa agccgccgtt gcagcagcta tcgctagagc taaagcgaaa
     3541 aaacaagctc aacaagcggt cgaaaaaccg gaagatattg ccaatgctgt gattggggta
     3601 aataatgatt tgcccctaca atcaatgaac gaaactacat cggataaatc tgtaggggcg
     3661 aataaccatt cgcccaaaac ggaaagcgaa gacccacgca aagccgccgt tgcggccgcc
     3721 atcgccagag ctaaagcgaa aaaagccgct cagcaggaga aaagcaacaa tgtttagcga
     3781 gctaattccg gcattgccgt ggtcgttcct gtttattcag gacttaatcg gcactatcgt
     3841 gtttgcgatt tcgggggcaa ttgctgcccg ccagcacaaa atggacattt tcggtatgtt
     3901 tattttagcg tttgtgaccg gggtcggggg cggtacgcta agggatatga tgattggctc
     3961 cacgccggtg ttttggatga aacaaccgat ctatgtgctg atgattaccc ttgcagtggt
     4021 gattaccgct attttccgca accaaatttc ccgcaaaagt tggcaaaccg gcttgctggt
     4081 gtttgatgcc atcgggcttg gcgtatttac cgtgattggc gtgcaaaaag gcttggattt
     4141 cggcttgcac ccactgatct gtgtggctct gggcggtgtg acaggctgtt ttggtggctt
     4201 aatccgtgat attttacgca acgaagtgcc gatcattttg caaaaagaag tgtatgtgac
     4261 cgccagcctt atcggtggtg tgatttttgt ggctgcaaac tcagttgggc tcgaaagcga
     4321 ttgggtttac cttgccaccg tgttcaccgt aattattatc cgcctgctgg caatacgctt
     4381 taatttgaat ttgccgagac tttaataagc ggtcattttt ttgcaatttt ttactaaaaa
     4441 ggttttatag atgtttaaaa tggtcagttc cccccacact cattcgagca atctcactgc
     4501 gaattttatg ctgtgggtga ttgcgatgat gttacctgct tttggggttc agctttatta
     4561 tttcggctat ggtgtgctga ttcaaacgtt gcttgccgtt agccttgcga ttgtgattga
     4621 aatcgggatt gcaaaattac gcaaaaaaac aaccgctttc tatttggctg acttatcagg
     4681 tattttaacc gccttgattt tggcgatgtc gattccgcct tatgctcctt attggcttgt
     4741 gttgattggc gtgattgtgg cgttattatt ggcaaaacac agttatggtg gcttggggca
     4801 gaatctattt aacccggcaa tggttggcta tgcgttgttg ttggtttctt tcccggtgca
     4861 aatgacggcg tggatagtgc cgattgagtt attaagtgaa ccaccgacat ttcgtgatgc
     4921 gatttcgttg attttttacg gggtaactag cgatggtttt agtattcatc agctagttaa
     4981 tagtgttgat ggcattgcac aagctacccc gcttgatagt atgaaaagca gccttgcaaa
     5041 atcaggtttt gacgcggtaa tgaatacgcc gattttcaac gggctgtttg cgaccggttg
     5101 gctacaactg aaccttgcgt tcttattcgg cggtttggtg ttgatttata aacggattat
     5161 ccattggcaa attccggtag caatgttggc aacttttgcc ttttttagtg gattcaccga
     5221 gctgtttagc caacaatcgc acttgcattt tgtgagccat ttctttagcg gtgcgatgat
     5281 gttcggggca ttttttattg cgaccgaccc ggtaacagcc tccattaccc caagaggaaa
     5341 actgattttc ggtggcttgg tgggattatt ggtttatcta atccgctact acggaaatta
     5401 ccctgatgcg attgcatttt cagtgttatt ggcaaacatt tgcgtaccgt taatcgacca
     5461 ttatacgcag ccgagattat acggcacaaa attggataac agataatgaa cacctcaaaa
     5521 attaccttaa attacgcctt aattttaggc tttattgcct tgctttgcac cgctgtttca
     5581 accggtgtgt acctgcttac caaaggcaag attgatgatg taaccgcaat gcaacaacgc
     5641 aaattattgg aagaggttgt gccgaaaagc cattttgata atgatgtgtt ggcgacttgc
     5701 aaactggttc agctcgaaaa tgccccttat ttgaaccgta tttatgttgc aaaaaaatcg
     5761 gaaaatctga ccgcttacct agttcaagga acggctccgg acggctattc cggcgatatt
     5821 gtgctattga tggggattga gccgaacggc aacattttag gcgttcgcac ccttgagcat
     5881 aaagaaactc cggggctggg agataaaatt gagacccgag tgtcggattg gatcttatct
     5941 tttaccaatc aactttttag tttagaaaac gaagcggatt ggaatgtaaa aaaagatggc
     6001 ggcaagttcg accaatttac cggtgcaact attacacctc gtgcggtggt caatcatatc
     6061 cgccaaagtg cgaaatgggt ggtgacagag ctggctcaaa acccgacaat gtttaatcaa
     6121 tttaaagcgt gcaaataggg ggagaaatgg aaagagaaca acaaatccct gtgacgaata
     6181 ttgacgttgc cccgaaacaa tccagcgttt ggaaaacgat tttcgctgat ggtgtgtgga
     6241 aaaataatgg tgctttggtg caattattag ggctttgccc actactggcg gtttcaaaca
     6301 gcgtaaccaa tgcacttgga ctaggcttgg caacaatgtt tgtgctaatt tgcaccaata
     6361 tcacggtttc cctgtttcgg aaaatcactc cacacgatat tcggattccg atttatgtga
     6421 tggtaattgc aacggtggta acggcagtac agcttttaat gaatgctttt gctttccctg
     6481 tttaccaatc gctcgggatt tttattccgc tgattgtaac caactgtatc gtgattggac
     6541 gagcagaagc ctatgcctca aaaaatgagg tcaaattctc ggcttttgac ggcttttcaa
     6601 tggggctggg aatgactttt agccttgtgg tgctaggcgc gttgcgtgaa attattggca
     6661 acggcacgct gttttcaggc ttagatctac tccttggcga ttgggcaaaa gccctacgca
     6721 ttgatgtatt gcatattgat tcaggtttac tactggcaat tttacctccg ggggctttta
     6781 ttggacttgg ggtgatattg gcggtgaaga atattattga taagagatga tgtgttatgt
     6841 cacttttctt tgcttgtgca aagaaaagta accaaaagaa agcacaccct gctttgttgc
     6901 tatcctcact tggttgaaat tttcttaacg aaaaataacc ctgatgttcg cttcgctctc
     6961 gctcgagtta ttttcctaaa aatttcaagt cgttcgggca actcagaagg gaacccgatc
     7021 cgaccataca agcggtgatt tttttggaaa attttgcaaa atgatgctct gccgggttcc
     7081 cttctgaacc gcccgaacga ctttgaattt gtaggaaaaa ttccttgttt gagcagcgaa
     7141 gcggcgagtt tggaattttt tcgttaagca aattcaaacc aagcgaagat agcggtgaag
     7201 tagggttgcc tttctttggt tactttcttt ggcgaagcaa agaaagtgac aaataatgag
     7261 gaattataga atgacacgaa ttaccgccca agacggctat acgcacaaat tcctatggtc
     7321 ttttctacac ccgaaatatt ggggcgtatg gttaggtgta ttaggattag tgattttagc
     7381 ctatgtgccg gtgcgaatta gggataaatt atccgctttt gtgggtaaga tggcgtatcg
     7441 ctatctcaag cagaaaaata aaaaaggcta ccaccgtgct aaagtgaatt tgcgttactg
     7501 ttttcccgat tggagtgaga aaaagcgtga agaagtggtc gagaaaatgt ttatcacggt
     7561 agcacaaacc atgttggcga ttggcgaaac tgcaatccgc ccggcctctt atttacaaaa
     7621 acggtgtgaa tttaccggct ttgaaaatgt ggtgaaagcc aaagagagcg gtaaaaacgt
     7681 gattatgtta gtgccacata cttggtcgat tgatatggcg ggggtggcga tgttctcgct
     7741 cggttatccg atgacatcaa tgtacaatcc acaccgtaat gcgttggtgg actggctgtg
     7801 gaatattacc cgtgagcgtt taggtgggcg aatgcacact cgtcaaaatg ggattaaagc
     7861 gtttttagcc gatgtgcgta aaggtgatgt tggttatttt ctgcccgatg aagatttcgg
     7921 cgaagagcta agtgtgtatg ccgacttttt tgccaccgaa aaagccactt tgccgggctt
     7981 aaataaaatg gcaagagtgg caaatgcgga agtgatccca atgttctcga tttataatgc
     8041 ggaaaaagca aaatatgaaa tggaaatttt gccaccgctt gaattttcag gagacccaat
     8101 tcaatccgcc cgagaaatga accgagtaat tgaatatttt gtggagaaaa accccgagca
     8161 gtatgtttgg attttacgtt tgcttaaaac cagacgaaac agggaagata tttatctata
     8221 atatagggaa aaggaaactg aaaagtaagc tgtactatca aacgtaaggt tatcaatttc
     8281 tccttgaaat ttctgctgtt tttctataga gttttccagt tattttttta ttacacgtag
     8341 gtcaaacaat gaaccaatta gatttaatta aatcttctat caaatccatt ccagattatc
     8401 cgaaagcagg gattatcttc cgtgatatca cttcactttt agaagtgcca actgcattcc
     8461 aagccaccat tgatgccatc gttgcagaat ttaaagacaa aggtattact aaaattgtcg
     8521 gcacagaatc tcgcgggttt atttttggtg cccctgttgc attagcgtta ggcgtgcctt
     8581 ttgtgttggt tcgtaaaccg aaaaaattac cacgtgaagt gatttcgcaa tcttacacgc
     8641 ttgaatatgg tgaagacacg ctagaaattc ataaagacgc agtgagtgct aatgataatg
     8701 tattggtcat cgacgattta ctcgcaaccg gtggtactat tgatgcaact gcaaaactaa
     8761 ttcgtcgctt aggtggtaac gtagaacacg ctgcctttgt gatttggctg cctgagttag
     8821 gtggtaaaga gcgtttggaa aaagaagggg ttaaatcctt tagcctagtc agctttgaag
     8881 gtcattaatg gggaacaagc ggtggctttt tgctaaaatt ttgcaaaatt tttcggaaag
     8941 atgaccgctt gtgatttcca aattgaatag aaaaatcaat gagttatcaa gttttagccc
     9001 gtaaatggag accgcaacgc ttctcggaag tagttggtca gcaacacgtt ttatctgctc
     9061 ttgaaaacag cttaagagaa gatagactgc accacgctta cctgttttca ggcactcgtg
     9121 gtgtgggtaa aacctctatt gcccgtttat tcgccaaagg cttaaactgt gtaaacggga
     9181 tcaccgccga gccttgcggt gaatgtgcga attgtaaagc gattgaagaa gggcatttta
     9241 tcgatctcat tgaaattgat gctgcttctc gtactaaagt ggaagacacc cgtgagctac
     9301 ttgataacgt tcaatacaaa cccaccgttg ggcgttttaa ggtttattta attgacgaag
     9361 tgcatatgct ctctcgtcat agtttcaacg ccttactaaa aacccttgaa gagccgcctg
     9421 aatatgtcaa attcttgctg gctaccactg atccgcaaaa actgccgatt acgatcctct
     9481 ctcgctgtat gcaatttcat ctgcgggcat tagagcaatc gcaaattgcc cgtcatcttg
     9541 aatttattct aaatgcagag aacattccgt ttgagccttt ggcactagaa aagttggcaa
     9601 aagcagcaca aggtagtatc cgagactctc tcagcctcac cgatcaagcc attgcaatga
     9661 gtaatgccaa tattacgctt gcgatagtca gccaaatgct agggttgatt gacgataatc
     9721 aaccactaga attagtgcaa gcaactgccc aagccgacgg tgaaaaagca atggcgatca
     9781 tcgagcaaat tgcagcgaaa ggcgttgatt ggcaacaatt attaagcgat gtggcagaag
     9841 tgttacacaa aattgcaatg ttgcaattag tgaaaacacc tacaaccgaa gaaacattag
     9901 tgcattttct ggcaaaacaa attccgcccg aagacgtgca atttttctat caattaatcc
     9961 tcaacagtaa aaaagagttg ccttttgcac cggagcaacg tgccggtgtt gaaatggcga
    10021 ttttgcgtgc gttggctttc caccctaaac aggcagaaaa aatagcaaca gttgcagtgg
    10081 aaaaggttac acaaccaaac cattcggttt cagcggttac gacagcaaaa ccacaaaatc
    10141 aaattagcca gctaagagaa aattttgagc aaaatcagca aaaaacggtt actgttgcca
    10201 atactaccac agcggttgaa agcattgctc aaccgccaca ggcagtagat accgctattt
    10261 cgccgtctgc tcctgcgact ctttcaccgg caatggcagc cctcgaagcc cgcaaaaagc
    10321 tacaagcaca gcaggcaaat ttagctcaaa ccgaaaaaaa aaagcctgag ctaaaagccc
    10381 ctcaagttat tgcaaaaaaa tcggcaaatc agaccgcttc attgcaagag cggtttatca
    10441 gcttggcgga aaatcagcac aaagccgtac tgcaagtttc aaagaaaacc gaatccgccc
    10501 ctaaaagtgt ggaagatgaa gattatcgct ggacgtggct caatcctgaa ttagaaaatc
    10561 aagcagacag tgccaaacct tctgatatta aacaagcgat tttgcaagaa cgcacccctg
    10621 aattagtggc aaaaaccatt catttatctt gtcagcagga taaatggtgt gacatcgcca
    10681 actcactcaa tttaggcgga ttttcccgtc agatcgcctt aaatagctat ttagcggaac
    10741 aaaatgaaca gcacctcgca ttggtgttaa agccgaatat ggctcactta gataatccgg
    10801 aatcacgtaa aaatttagaa gctgcccttg ccgaaaaagg ctattcatac gaattgacca
    10861 ttggtgacaa tagcgaacag caaactccgc ttgaaattcg gcgagccatt ttcaaacaat
    10921 taactgaggc agcaaaatca gctctgctta acgatgaaaa attaatgtta cttcgcaacg
    10981 cttttgatgc acaaattgat gaatcgacca ttcgagcggt ggcggaaact gagtaaaaca
    11041 aatgaaagca ttagaattaa ttgatttggt aaaaacctac ccaacaggtg taaaagccgt
    11101 taaaggcatt aatcttgtgg tcgagcaagg tgatttctat gccctacttg ggcataacgg
    11161 ggcaggtaaa tctactacta ttggcattat cagctcactg gtaaataaaa ccagcggcag
    11221 cgtgaaagtg tttggctatg atttagacac ccaaaaagtc gaattaaagc atcaaatcgg
    11281 cttagtgcca caagagttta atttcaatca gtttgaaaaa gtgattgatg tgctagtgca
    11341 acaagccggg ttttacggca ttcctcgcag tgaagcctta gtacgtgccg aaaagtggct
    11401 gaaattgctc gacctatggg aaaaacgcac ccacctcacc cgtgagcttt ctggtggaat
    11461 gaaacgtcgg gtgatgattg cccgagcctt aatgcacaat ccaaaactac tgattttaga
    11521 tgaacctacc gcaggggtgg atattgaact ccgccgctca ttgtgggatt tcttgcggga
    11581 tctaaacaat caaggcacaa ctattattct cactacccac tatttagaag aggcggaaac
    11641 cctatgccgt cacatcggca ttattcaaca cggcgaatta attgaaaaca cctcaatgaa
    11701 agccttgctt gccaaattgg aaagtgaggt atttgtgtta gatttgcaaa attctgagca
    11761 aaatcaaccg cttgtgattc aaaattaccc gcataaatgg cttgatgaaa acacccttga
    11821 agtgaatgta aaacgccagc aagggctaac caatctgttt tcgcaaattt ccgcccaagg
    11881 ggctgaggtg ctaagtatgc gaaacaaatc aaaccgcttg gaagaactat ttatcaatat
    11941 ggctcagtaa aatgaattta atcggatttt ataccttagc ttacaaagag tgccgccgca
    12001 ttttgcggat ttggcgacaa actttagtgc caccggtgat tactaccacg ctctattttt
    12061 taatcttcgg cacgctgatt ggtgggcgaa tcggggaaat gaatggcgtg ggttacaccc
    12121 aatttattgc acccggctta attatgatga ccgccatcac cgcctcttat gtgaataccg
    12181 cctcttcatt tttcttgagt aaatttaccc gagattttga agagatgctg atttcgccac
    12241 tctctaccca taatattatt tggggttatg tcaccggcag tattttgcgt gcaggtttag
    12301 ccgcaacctt agtaatgtgc gtggcaatgg tgtttgtctc gtttgaaatc tactcggttg
    12361 cgattatcgt cttaaccctg ttgctgacaa tcattgcctt tgcgttaggt ggcgtaatta
    12421 atgcggtgtt cgcccgctcc tttgatgatg tggggctgat tccaaccttt gtgcttactc
    12481 ccttaactta cttaggcggc gtattttact ctatttcatt actgcctgaa ttttggcaaa
    12541 cggtgtctaa attcaacccg atcgtttata tgattaacgg cttaagatat ggctttctcg
    12601 gtatcagcga tgtgccgtta ggttatactt ttgcagtgct tacttcactt tgcatcggct
    12661 tgtatattat tgcctattcc ttaattcaac gaggggttgg gctgcgttct taactaattg
    12721 tgaggttatg aaaatgaaag cattaaaaaa actagcaatt acaatggcat taacgttatc
    12781 aggcacagcc ttttcacaag agattaccgt gtttgctgcc gcttcaatga caaatgtgtt
    12841 acaagatatt cagcaggatt ttgaaaaagc ctatccacag gataaaatca cgttctcctt
    12901 cgcttcatca tcggtattag caaagcagat tgagcaagat gcaccggcag atatttttat
    12961 ttccgccgac caaaagtgga tggattatgt tgccgaaaaa caacctgaga aagttaaaca
    13021 tcgccgcaat ttagtcagaa acgagttagt attaattgca cctaccgaaa gtaacattga
    13081 gccaaaagcg atacaagcgg tcgattttgc caaagaatta gcaaacagct atttatcggt
    13141 gggagaccca aaccacgttc ctgccggcaa atatgccaaa aaagccctta gtcattacca
    13201 attatgggaa agtgttgaac ctcgtttagc gagggcaaaa aatgtacgag atgccctctc
    13261 ttttgtcgag cgaggcgaat ccccacttgg gattgtctat tccaccgatg ctaaagtgtc
    13321 gaataaagtc aaagtggttg ccgttttccc accggaaagc tacggcgaaa ttgtttaccc
    13381 tgctgcggca gtcagtgaaa aagcctctgc cgccacattt ttagattttc tcaaaacccc
    13441 gaaagcaaaa gcgaaatttg aggcagctgg gttttatcct gtaaattaaa tttactctct
    13501 ccccttgtgg gagagagaca gaaaaatatg tcgttcagac atatttttca gagagagggc
    13561 aaatagcgtt taaaatattc cccctctccc tgatttttct tctgaacgaa gaaaaatcta
    13621 tccctctccc acaaggggcg agggtaagct tataaccaaa tagttttaga ttatgcttaa
    13681 tttcacccca caagaactca atgcgattgt tctaagccta aaagttgcct ccattgctgt
    13741 agtgcttgca ttaccgcttg ccgtgtgggt ggcgtggctg cttgcccgca aacagttttg
    13801 gggaaaaaat ctgctcaatg gtattatgca tctccctctg gtgttaccgc cggttgtcat
    13861 tggctattta ttgcttattt cgatggcgaa acgaggggta atcgggcaat atttgtggga
    13921 atggtttcat ttcagcttga gtttttcgtg gaaaggagca gtgcttgcct caatggtgat
    13981 ggcgtttccg ctaatggtgc gttctatccg tttagccttt gaggcagttg atcctaaatt
    14041 ggagcaagcc gccagaacgc ttggagcaat accgttaaaa gtgtttttca cgctcacttt
    14101 accgctctct ttttcaggca ttattgccgg tggcgtgctg ggttttgccc gctctttggg
    14161 ggagtttggg gcaaccatca cctttgtctc caacattccc aaccaaaccc aaaccattcc
    14221 tgccgccctt ttcaccttta ttgaaacccc cgatggcgaa atggctgccg cccgtttgtg
    14281 cttggtggcg attctgattt cactcattgc cctgttctgt tcggaatggc tggcagaaag
    14341 gcaaaaacgc tatgctcaaa cttaaacttc ttcagcaact cggcaatctg acgctcaatg
    14401 tcaatctcga tttgccgaat aaaggaatca ccgctatttt cgggcgttcc ggtgccggta
    14461 aatccagcct gattaattta attgcggggc tttcaaccgc tcaagccggc tttatcgaat
    14521 taaacggtca ggtgctgttt gacagccaaa acggcatcaa tttaccacct gaaaaacgca
    14581 acattggcta tgtgtttcaa gagcatcgcc ttttccctca ttattcggtg gaaaaaaact
    14641 taaaatatgg ctacaagcgg tcggattctg cggatttttt gcaaattgtg gaactgttag
    14701 gcattgcccc tttgcttaat cgctatccgg caagcctttc cggtggcgaa aaacaacgtg
    14761 tggcgattgg gcgggcgtta ttaagctcac cgaatatttt gctgatggac gaaccattat
    14821 ctgccctcga tctccctcgt aagcaagagc tactggacta tttagataaa ttatccgctc
    14881 ggcttgaaat accgattctg tatgtcagcc acagtttaga ggaagtagtt cgattggcag
    14941 atcatcttgt gctgttggaa aacggcaaag taaccgcatt tgataccctt tcagcggttt
    15001 ggcacagctc ggcattttcc gcttggcagc caaatcatca gcgaattagc ctgcttgaat
    15061 taccggtgga agaaacactt ccccactata atatgcttgg cttgagcttg aacgcacagc
    15121 gattatgggt gaaccaactc ccccgccatc aaataggcga gaagctaagg gtaactattg
    15181 ccagcaaaga ggtttcaatc agcttacaaa aaccgactca aagctcaatt cgtaatgtgt
    15241 taaaaggcaa tgttcggaaa atagaaacgc atttagatcg ggttgatctg gcaattcaag
    15301 tcgaaaatca gcaaatttgg agtacgatca gcctttggtc ttttaatgaa ttagcgattc
    15361 aaccggagca agaggtctat cttcaaatca aaagcgtttc tttataggct tgcaaattta
    15421 cgctaaaata tgaccgcttg ttaattccca aaagagacat tatgccaatc gttaatcaat
    15481 ctgccctcgt gccttatagt gccgagcaaa tgtatcaact tgttaatcag tatgaaaaat
    15541 accccgaatt tttatccggc tgcgtgagta ccaaaaccct tagcaccggc gaaaatgaat
    15601 taaaggcaga gttacacatt cagaaattag gcattagcca aactttcagt acccacaata
    15661 aaatgacgcc gccctataaa atcgagatgg cattaattga agggcctttc cgccatttac
    15721 acggagcttg gacattcacc ccctttgatg agcaaagttg caaaattgcc ctgcaattaa
    15781 attttgaatt ttccagccca attgtagcaa tggtgttcgg caaggtgttc aacgaattaa
    15841 ctttaaaaat ggtaaatgct ttcaaacaac gtgcaaaaga ggtgtatggt gtctgaacaa
    15901 cgtcaaaatc cagaagaaca aaaaagtgaa gaacagaaaa ttaatgttga ggtgctttat
    15961 gcttaccctg ataaatattt tctgaaaaaa ctgcaagtac cgcaaaacgc gaccattcaa
    16021 actattattt tgctctccgg cgtgttggaa aaatataccg aaattgactt gcgtgaaaac
    16081 aaagtcggta tttttagccg cccggcaaaa ctgaatgaaa cggtggaaga aggcgacaga
    16141 attgagatct atcgcccgtt aattgctgat ccgaaagaaa tcagacgcaa aagagcggct
    16201 gagcaagcgg agaagaaata gctttctcct attcaatcta ggggtgaata attattcgcc
    16261 ctatctattt tctccctcgc cattcctgct at
//
LOCUS       DANLXK010000051        16254 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.051, whole genome shotgun sequence.
ACCESSION   DANLXK010000051 DANLXK010000000
VERSION     DANLXK010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16254
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(379..1419)
                     /locus_tag="PXD88_001344"
     CDS             complement(379..1419)
                     /locus_tag="PXD88_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL6280922.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ
                     KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
     gene            complement(1428..3230)
                     /locus_tag="PXD88_001345"
     CDS             complement(1428..3230)
                     /locus_tag="PXD88_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL6280923.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQ
                     RCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            3380..4207
                     /locus_tag="PXD88_001346"
     CDS             3380..4207
                     /locus_tag="PXD88_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL6280924.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            4221..5249
                     /locus_tag="PXD88_001347"
     CDS             4221..5249
                     /locus_tag="PXD88_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL6280925.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            5259..5948
                     /locus_tag="PXD88_001348"
     CDS             5259..5948
                     /locus_tag="PXD88_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL6280926.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            6060..6575
                     /locus_tag="PXD88_001349"
     CDS             6060..6575
                     /locus_tag="PXD88_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL6280927.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            6572..6784
                     /locus_tag="PXD88_001350"
     CDS             6572..6784
                     /locus_tag="PXD88_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL6280928.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            6790..6996
                     /locus_tag="PXD88_001351"
     CDS             6790..6996
                     /locus_tag="PXD88_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL6280929.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            6989..7555
                     /locus_tag="PXD88_001352"
     CDS             6989..7555
                     /locus_tag="PXD88_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL6280930.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            7552..8007
                     /locus_tag="PXD88_001353"
     CDS             7552..8007
                     /locus_tag="PXD88_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280931.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            8156..8377
                     /locus_tag="PXD88_001354"
     CDS             8156..8377
                     /locus_tag="PXD88_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL6280932.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            8374..8859
                     /locus_tag="PXD88_001355"
     CDS             8374..8859
                     /locus_tag="PXD88_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280933.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYD
                     IYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            8852..9310
                     /locus_tag="PXD88_001356"
     CDS             8852..9310
                     /locus_tag="PXD88_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL6280934.1"
                     /translation="MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS"
     gene            complement(9361..9639)
                     /locus_tag="PXD88_001357"
     CDS             complement(9361..9639)
                     /locus_tag="PXD88_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280935.1"
                     /translation="MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLAN
                     MVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ"
     gene            9678..12590
                     /locus_tag="PXD88_001358"
     CDS             9678..12590
                     /locus_tag="PXD88_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280936.1"
                     /translation="MSNNLKIQVVLSALDKLTAPFKSVVKQTEKLSQSLKVQRDELKA
                     LEKTQSKMQSFKKMDDSIKKSNETILKQTKHLDNLKNKISQMKNERIELKVKMDAKKR
                     EFQQITKGGSAWSARAAFLDKDFEKMQREYEKLGASISSVSRKRTEENRALKDSRHQQ
                     AKQLLYFRSLRRELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKAR
                     NEKYWATVEKVKNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNA
                     ILEVTEGSAEKAKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDT
                     GAAMGKPVMQAVEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKV
                     NKNNRKEIEQTLTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWI
                     KNKLQWVLDSLDKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARE
                     NKGLIATFVKWSAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALF
                     DSNDKFRLFNKSLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTK
                     VFWLNMLKGILGKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRA
                     FFGGFLQGLSKGLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKA
                     SSAGEKFGLALAGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEH
                     AKQITKTAEMSNNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGI
                     VHKGEYVMTKEATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTA
                     SQPSPTVAPVSQNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG"
     gene            12655..12831
                     /locus_tag="PXD88_001359"
     CDS             12655..12831
                     /locus_tag="PXD88_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280937.1"
                     /translation="MFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQK
                     SQELNEFQREVVYG"
     gene            12824..13111
                     /locus_tag="PXD88_001360"
     CDS             12824..13111
                     /locus_tag="PXD88_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6280938.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIILAIIHSSRLYPRP"
     gene            13240..13845
                     /locus_tag="PXD88_001361"
     CDS             13240..13845
                     /locus_tag="PXD88_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6280939.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            13845..14180
                     /locus_tag="PXD88_001362"
     CDS             13845..14180
                     /locus_tag="PXD88_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL6280940.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKI
                     SIKGMRFTL"
     gene            14177..15094
                     /locus_tag="PXD88_001363"
     CDS             14177..15094
                     /locus_tag="PXD88_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL6280941.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERL
                     VVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVS
                     VISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEI
                     NAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQ
                     PRTDLVLTPYQAGYCVNYTLNVEVSDEYS"
     gene            15081..15713
                     /locus_tag="PXD88_001364"
     CDS             15081..15713
                     /locus_tag="PXD88_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL6280942.1"
                     /translation="MNTVKALLPPGSSLLEKRAAECLQQAVQNPIKFANLINPHKCPV
                     KFLPYLAWALSVDYWEEHWSEELKRETIIRSFEEHRKKGTASAVRRIVESLGYAFEIR
                     EWFAEKRQRQPGTFRVFVELKDKGISEKIYQELERLIEDAKPVSRHITELAVSATSKG
                     KANIFSGAHSGEIITIYPPKKLPVIVIKSKMDLFSATNSGEIITIYPNKR"
     gene            15716..>16254
                     /locus_tag="PXD88_001365"
     CDS             15716..>16254
                     /locus_tag="PXD88_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6280943.1"
                     /translation="MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITP
                     SASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVA
                     VANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLS
                     SPDGYKHIGRCKSVAELRT"
BASE COUNT         5170 a         3373 c         3625 g         4086 t
ORIGIN      
        1 tatatgtata tgcaattaaa gaataacgat ttttcctgac aagcaatatt tttgcgttga
       61 ggtgcgtaaa attgcgtaaa aagatcgagt ttttaagatc gctttgcgat tatatggggc
      121 ttgtagggat cgcctttttg catttgcgta taaatcgaca aattaagtgt gcgggcgagg
      181 tgagggatag accgcgcggg gttggaggtg gtgaagtcgt tgaaaaataa aggaaaaatt
      241 attttttaag tgtattttat ttgttgtttt gatataataa attgccgaaa tatataatct
      301 aatcaggcaa aacttttgct ttatatatta aaaaagcccc aatctaggag ctgtattgtc
      361 agtttgtaaa gatctgtttt attgtgtccg ctgtaacaat ttagacggtt taaatttgat
      421 aacctcttga cctaaccact gattaaactc tttcaatcgc tcttgcaatg gctcaatctc
      481 ggtgataaaa aacacctcgg cagcatcagc cacgttgcca aaaccgccgg tgttatttgg
      541 gataatcccc atcagttgtg gtggcacacg gtgagcagct aacacatcat cacggctcac
      601 gttcttgata ttaaaaaact catcttttgc cgacacatca gcaatcggaa taatctgtat
      661 tccatctttc ttgccgtttg gtgcgtggac gaacaagttt ttaaaattcc ccaccccttt
      721 tgactgcttg agctgctggc gaatattttc aacatcttct tgtttttgtg acgcatcgct
      781 catataaaac acaaagccgg cgtgagctcc atttaaaaaa tacttacggc gaaacagagt
      841 agcactctca tttaaccacg cagattgcag ggccgaaaga tattgtggca agccgtaaat
      901 atcttgatta atatcaggct caagcaagtg atagattgag cctttggcaa attcgtgttc
      961 ttggtgatcg aatcgttgtg gcacatagta aaattgacca gcctctaaac cctttcgcac
     1021 atattttgcc aaaggtgatt cgattcgctg tacctgccca aggcgatttc gcaccacctc
     1081 aaaataggcg ttgccaaata ctaaataatc tttaacaaac gatgacaaat cacggcgtga
     1141 taaataacgg ctatcaacct cgcaagtgga aagcaaaata tttgctttgg tgatgatcgc
     1201 actttcgtgg tgtgttgatg accttaacga tttcgccaag ccatcaaagc tcatcggtgg
     1261 gttataccat ttctcataca tcgccgaaca ctccaaataa ttgagaatat cggcacggtc
     1321 taacaccgga atcgggtcac caaaactgaa aatttcggtt tgtgcttgcg gttgtaagcg
     1381 gtcattttgg gttaaatttt tgcgcaattg ttttttcatt ttttgtccta atcatctaaa
     1441 aaatctactg tgccggtcgt ttcttccagt ttcccatcaa acggctcatt aataaatacc
     1501 tgcaagcaag cccacgcaag gtcggcgtgg cttgcctctt ccgaacggtc tgccacataa
     1561 gtcacttgcc gtccgctgtt ggtgatctgt tttttaattg ccataaaact cgcaccaacc
     1621 tcaacagcgt gcattgagtc aaattcaaat cgtcctttgc tgataatatc caagcctttt
     1681 agtaccatct tggatttcag ctctacgttg taagtaagag ccaccgcatc tggtcgttct
     1741 tttttgacga tttcataaac accgacacca agccctgtgg tatcaatcgc cagtctggtc
     1801 acgttatatt ttgcacaaat agcgacaatt tctgccgctt gttcggcaaa atcagcccct
     1861 ttaaaagtgc gatactctaa tagtcggaat ttcccgccgt ccactttcgg cggagcgatt
     1921 accaccaacg ccgagcggtc gccggtgtaa gacgggtcat acccaaccca tacctcttta
     1981 ttgccgaatg ggcgttggta gccgtccgtg aatacataat ctcgccacac ctccatcgag
     2041 tccacaaggc aacgttgcat catcgtgaac ttgaacacag actggttatc atcaataaac
     2101 tcacacataa agagctgctc gaactcatcg ggcgagtttt ccagtttgag ttgctcaata
     2161 tcaaacaggt tacagccacc tgcctcggca tcgtagatat tcacgatttg tcgccattgg
     2221 ccgtctccgc attttttgcc gtttttcaag ttggcgtgag aaatatcaat ttccacctgt
     2281 tccgctttcg gacgtttgcg gttaaacagc ttgcccgacc aaagcagata ggcggaatgg
     2341 gtaatgctcg aaggggtaga aaaataagta atccgatatt gtttttggct cgccataccc
     2401 gctgccactt tgcggatttc ctcaaagcgg tttacccaaa agatttcatc aaaatagaga
     2461 ttgccgtggt aagactgtgc cgttttcgag tttgtaccca agaaaattag ttgagactcg
     2521 ttcggcaagg taatggtttc gccttttagc tccacatcgg caacccgttt ggcgtatgcc
     2581 acaatatagg ctctaaattg caatgcctgt tttttcgagg cggaaataaa aatctgattt
     2641 ctaccggtta ctaacgcatc aactaacgcc tcgtgagcaa aataataagt cgctccaatt
     2701 tgacgacttt taagaatatt gcggattcga tgagtcagcc cagcttcgtg ccattttttc
     2761 tgataatgga acattccgtc taaaaagccg tttatcaaca gttcggcttg ctcttcggaa
     2821 atggcatttt gctcgggctt tttgcggtcg cctttattac ggtttttaat atttgggttg
     2881 aggtcggctt cattacctcc gccgttagaa tattttttga ttcgtgctgt actttccaac
     2941 aaccgacgta aagcatccat ttctttgtag tcgttattgt ttttgctctc tttcataatc
     3001 agcaaattca gccgtgattc cagtgtggct tccacacgtc caacggggct gatttcgtcc
     3061 catttctctc gctttttcca acttgcaatg gtagagacgg gaatatttag ctgacgagaa
     3121 atttcggtca cggtgtaacc tgcccaatac tttgattgag cctctcgttt atcgtgtaga
     3181 gggttggcag ccaacacctc gtattcagtg attgtatttt cattttccat aggtgcgatt
     3241 atcaaaaatc caccttgttt aagcatttgc ttgaggctgt gaaacccgat ttaacacgta
     3301 ccacacattg aaaccgccgg cacaaaacaa gatcataaat ccgattttta cccctcccct
     3361 ttagagcaag gaaaaacaga tgacaacaaa atccaaatgg tttgtggtag caacggaagg
     3421 agcaactaca gatggacgcg aaattagtcg tgaatggctc acgcagattg aagaaaatta
     3481 cgacccgaaa aataactatg gtgctcgtat taaccttgag catttccgct ggcgttggtt
     3541 tgagaaagat gacccgcatt cttacagcta tggcgatgtg ttagcggtta aaacagaaga
     3601 acgtgaagac ggcaaattac agttactggc agaaatcgcc ccaaccgaag ccttagtgaa
     3661 gttagtcaaa gacaagcaga aagtttatac ctctgtggaa attgacctta attttgcgga
     3721 cacaggcgag gcgtatttag ttggtttggc ggtgactgat acaccggcaa gcctcggcac
     3781 ggaatacctc acattttgtg ccggtgcaac ccataaccca ctagcagacc gcaagcaaaa
     3841 gccggaaaac cttgtgagtg aggcagtaga ggcgaattta gaatttactg ctgaacctga
     3901 aaaaggtgcg tggctggaga aatttaaggc gatgtttacc aaagccaaaa ccgacaatga
     3961 cggcaaattt gccgaacacg aaaaggcaat ggaactgtta gctgagcaat ttagcaaagt
     4021 ttcgacagaa aacgaccgct tgcaaactga actaagcaca ttgcaaatcg aatttaccga
     4081 attgcaaaaa caagcgggcg aatttgccga aaaatttgca aaactggaac aagaaccgtc
     4141 tgccaattac accccacgcc caaaagccac tggtgcgaaa gcaggtgatg tacaaaccga
     4201 tttttaattg aggatcacga atgaaagatt taacccttga aaaatataac gcctaccttg
     4261 cacgccaagc tgaattaaac aacttgccgt ttaatgcatt ggcaaccggc attaaattca
     4321 cagtgcaacc atcggtacag caaaagctgt atgaaaaggt gcgtgaaagc tctgatttct
     4381 taaaatctat cagctttgtg tttgttgatg agcaaaccgg tgaaacctta ggtttagatt
     4441 cagctcacac cgtggccagc accaccgata ccagcggtga cggtgaacgc aaaaccacct
     4501 ctattgcgaa gttggtaaaa caaacctacc actgccaaca aatcaatttt gacacccata
     4561 tcaattataa acagttggat atgtgggcga aattccctga ttttcagcaa aaagtggcga
     4621 atgttgcggc aaaacaacgc aaacgtgact taattatgat cggctttaac ggcacaagtc
     4681 gtgcggcaac cagtgatcgc aacagcaacc cgttattgca agatgtggca aaaggctggt
     4741 tgcagaaaat gcgtgaagat gccaaagagc gtgtaatgaa tggcgaaagc acagacaacc
     4801 aagttttagt cggcaaaggt caagagtatg ccaatcttga cgcactcgta atggacgcca
     4861 ccgaagaact tattgatgaa tggcatcgtg atgacaccga tttagtggtg attaccggtc
     4921 gcaagttgct tgcggataaa tatttcccga ttgtgaatca gcaaaacgca ccaaccgaag
     4981 aacttgccgc tgatattgtg atctcacaaa aacgcattgg gggcttaaaa gcggtgcgtg
     5041 tgccgttctt cccggcgaat gcgattttaa tcactaagct ggaaaattta gccatctatg
     5101 tgcaagaggg gacaacccgc aagcatattg agaacgtgcc gaaaaaagac cgtattgaaa
     5161 cctacgaatc agaaaatatc gactacgttg tcgaagatta tggctgtgcg gcattaatcg
     5221 aaaacattac actcaaagat aaagagtaag gtggaactat gcgaatgagt ccggctcggg
     5281 ctcatttttt gcggaaaacc gcagaaagtg agtctgcaac cccaaaccga gaaaaccttg
     5341 aaggcttaca aggctatgac ttagttttag cccaacttaa agcccatcaa cgccaattaa
     5401 agaaaatcca gtcgattgag cgaaagattg agtttaaacg caacaatttt gagcaatacc
     5461 gaccttgggt ggaaggctcc cttgccaaag gctccggtgt gcaagacacg gttatcacca
     5521 caatgctgat ttggtcgatt gatattggcg attacccaac cgcccttgcg attgctcaat
     5581 acgttttaat gcacgatttg gcaatgccgg agcagtttga acgcacaccg gcaaccgcct
     5641 tggttgaaga gcttgcagag gcggcaaaga aagcccgaga ccaaaaacag ccgtttgagg
     5701 cagccgtgct gaaacaggca aacgacctca ccgctgaatt tgatatgccc gacccagtgc
     5761 gagccaaatt actgcgtgag ctaggcgagc taatccaaga ggcagagcca caaaccgccc
     5821 ttgaacacta tcaaagagcg atagccctcg accctcaatg cggtgcaaaa ggcttgcgag
     5881 acaagttaga aaagcaactt gccaaacaag ccgaagagcc gaaaccagca gaagaacaga
     5941 atgagtaggc gaaagccgaa atagagcgta tccacgccag ccaaggggcg gattttaaag
     6001 ggtgatttat tcattttgca cccttttaaa atccccaccc cttaccttac ggaaacctta
     6061 tggaacaacg caatcacgtt attagtatcc cgaaagtgaa tggctatgaa tccagcaaaa
     6121 atgcgatcaa gcccaccgca gaatctgatg aaactatcac caataatggc ttttttccga
     6181 acattgagct actggaggtg cgaaatgcaa tgcggattga tggcacggtc attaatgagc
     6241 ggctaaaaca agcggtgatt gaggcaatgg caacagtcaa tgccgactta aaagcctatc
     6301 gcctcaatgc agagcaagca caaaaagcga acttgcaagc ctgtgatgat gagcaaatca
     6361 acggcgaaag cgtgctggtt tacaaatata aacgagcggt ctattgcctt gcagtagcga
     6421 acctttacga acgctaccgc agttatgaca gcaccaaaga cggccacgac aaagccgaag
     6481 agctagaaag taccgccggt gatttgaaac gagattacca ctttgccgtg cgtgatattt
     6541 tgggcgaaaa ccgaatgatt agtgaattga tatgaacacc ttgattgcac gccaagacga
     6601 caccttagac gagctgatct ttcggcacta cgggcaaacg gcaggcttag tcgagcaagc
     6661 cttagaatat aaccccgaac tggctcattt gccacgtttg ccgatcggca ctgtagttac
     6721 aatgccggat attgagagcc gttttgcaac ggtggcgaaa tccagcgtgc aactttggga
     6781 ttaaaaaata tgcacaaaac tgaacaagcc tcctattttg gggcaatttt tggctttttt
     6841 ggtagcctca ccctatctga ttggggggtg gtagtgagta ttctggtagc tattttaacc
     6901 ttattactta attgggcata ccgagccaaa gaatacaaac tgaaagagcg agaatttgag
     6961 ctaaagctac aaaaccaagg gaaaaagaat gagtaaaagt gtaaaagttg gcgtatttgt
     7021 ctgctccgtt gcagctatta tcgggacggt aaagcaatat tacagctccg aaatccgcac
     7081 cagcgaaaca ggcttagcca ttatcggcaa tgcggagggt tgcagacgtg atccgtataa
     7141 atgccctgcc gatgtaatca cggttggcat tggctcaacc gaggcaagcg gtgagaaaat
     7201 taatgtcaat cacaaataca ccgataaaga gattgccgag cgttggataa aagatcttaa
     7261 aatagctgaa aggtgtatca atcgttattt taatggcgac aaaatgaacg aaaatcagtt
     7321 ttcggcgatg gtatcagcag catttaatat gggatgttac aaccttagat tttatccaaa
     7381 tgaaaatggt aaatacattc agacaacaat ccataaatat gctatggcta aggattttaa
     7441 agcgatgtgt aataggatac ctgattttaa ccgctcggga ggtaaagtgc taagaggttt
     7501 gaaaatccgc cgagaaaaag aaaaagccct gtgtctcggg caggaggtta aatgattgtc
     7561 aaactctgcc aaatgaccaa taagcatttc agcccgctaa tgattgtgct ggtgctagtt
     7621 ggcgtattag ccaatttcgt gcagtttcgc caaaacgaaa gcctgaaagc agacttacag
     7681 gcacgcacca cgcaaaacca actgattcaa gccgataacc gcaatttagc caatcagctt
     7741 gaaaacagcc aaatacagct tgaggcgtat caaaaacagg tggacgacct caatcagaaa
     7801 gtgttagcca aaatgaaaca agcggagcaa cgaagtaatg aaatccttaa cgaactggaa
     7861 aagcataaaa agtgggctga ttctgccgtg cctcctagcg ttggcaagct gctcaaccaa
     7921 cgaaagcgtg cggtatcaca ccctcaaatc gaacccgata atctgtccga aaaggctgga
     7981 gtgccaaaca ccggcaaccg agattaacac caacggtgat cttgtcaaag cactagacaa
     8041 aagactcaac accattgagg tatgccaagt catcatcgaa tcgttcgagc attgcatcga
     8101 gcaatacaac aaaatcaacc aaggcgagtg atcgcctttt ttaataagga cgactatgtc
     8161 agaccaaatc gaccgagcca acgaattagc cgaaaaagcc agagaggcgg cacttgcaaa
     8221 aattctgcaa aatcagaccg cttgcaccag cctttttgag tgtgaggatt gcggagagcc
     8281 aatccccgaa aaacgccgag aaatggttat tggttgcacc cgttgcattg agtgccaaac
     8341 catttacgag cataagcaaa aaggctaccg cagatgatta aacctgatcg cttgcgagcc
     8401 gtgctcacac aaaccattga tatattccaa gctaaccccg aaaagctgat tttgcaatat
     8461 gacaaaggca aaattaaaag caaagggagc caaagccatt cgtttgaata ccactacgat
     8521 ttagagctaa tcgtggtgga ttttccgtat caccccgacg tgttgtttgt gccagtgcta
     8581 aattttgtgc gaaatgaaca atgggagcta ctgcaaaacc cggaactaca agacaaaatc
     8641 gaatttgaaa tcgaccacaa caatcacgag agctacgata tttatatccg cctcccgctt
     8701 accgagcggg tgatcgtgaa agagcaagac ggacacctaa ctgcaaccca cgccgatgaa
     8761 ccgaaccttg ccgatgtttc gccatttacc cgtttaaccg aatatgaggt ttacctcaaa
     8821 gacgagctga tttatcagtg ggcagagcca aatgagtgaa ccgatcgaac aagtaaaaac
     8881 cgcctttgat agcttactga ataatatcag caaacctcgc agacggttga tgtatcaaca
     8941 aatcgggcga gagcttgccc gaagccaacg cagacggatt aaagcacaac aaaacccaga
     9001 cggctcggca tacgagccac gcaaaaagcc gaagaaaggg gtaaaaagca aaattaaatc
     9061 gggcaagatg tttgacaaaa ttacccagcc acgttttatg cggctacgcc ttgaaagcga
     9121 aggtgtcagc ttaggttatg agggtggtga tgcggtcatc gcccgaatcc accaacaagg
     9181 cttaatcgga cgagtgcgga aagattggga tttaaaagtg aaatatgcca gccgtgagtt
     9241 gctaggtttt actgatgacg atctgcagat gattgaggat tatatgatta atattttggc
     9301 tggtagctaa atgatgaata gaaacttttg caaaaaagcg gtcaattttg accgcttgag
     9361 ttattgatta acgctttgtc tatctgaatg ataccaacaa agaaacccta aaatagctga
     9421 aaaaatcaat gctatcaaaa taaaagtatt gagtggtaac aatacataaa gtgagatcag
     9481 aataacgata atagagagcc caaccatatt tgccaataat gaaagcaggc ttaaaaatac
     9541 tgttgtaact acaccaaaaa tggcagcaaa ggttgtaaaa cctattgcca ataatgcacc
     9601 gaaaccaatt aacccaagta agataaataa gatttccata gattttccct tagccatact
     9661 acaattaagg ttataatatg agcaataatt taaaaattca agtagttctt tctgcgttag
     9721 ataaattaac cgcaccattt aagagtgtgg taaaacagac ggagaaatta tctcaatctt
     9781 taaaagtaca gagagatgaa ttaaaagcat tggaaaaaac acaaagtaaa atgcaatcat
     9841 ttaaaaaaat ggacgatagc attaagaaat ccaatgaaac tatactcaaa cagacaaagc
     9901 atttagataa tctcaaaaat aaaatcagcc aaatgaaaaa tgaacgaatt gagctgaaag
     9961 tgaaaatgga tgcgaaaaaa agggaatttc aacaaattac gaaaggtggt tcagcttgga
    10021 gtgcaagagc cgcattttta gataaagatt ttgaaaaaat gcaaagagaa tatgaaaaac
    10081 tcggtgcatc tatttcaagt gtcagccgaa aaagaacaga agaaaatcgg gcattaaagg
    10141 attctcgcca tcaacaagct aagcaacttt tatattttcg tagtttaaga cgtgaattga
    10201 gagcaagcgg cattaatatt aaagcttttg ctcaaagcga aaccaactta acagacaaga
    10261 ttgcaaaagc aaatcaatta atcgaccaac aaaaagcaaa attagaaaaa ctaaatgcgg
    10321 ttaaagctcg aaatgaaaaa tattgggcaa ctgtcgaaaa ggtaaaaaat accagcgaac
    10381 gtttgcataa tttaggacaa cgctcaatga ttagtggtgc ggcaatttct gcccctgttg
    10441 ttgggctagg gaaaggggtt gtcggaatgg ctcaaacagc gggtaaattt gaacaattta
    10501 atgctatttt agaggtaacc gagggaagtg ctgaaaaagc caagcaaagt tttgattggg
    10561 ttaaacaatt tgcagtagat accccctcaa accttgatga agcaatggaa gcctttgtaa
    10621 agttaagagc atacggtctt gatcctacca atggcttact acaaacatta ggtgatacag
    10681 gtgctgcaat gggtaagcct gtaatgcaag cagttgaggc aatagcagat gctttaacgg
    10741 gtgagaatga acgcttaaaa gaatttggta ttaaaggaag tgtagttaaa ggtacaaata
    10801 ttattgagta tgcctacact gataaattag gcaaacaaca agtcgcaaaa gtaaacaaaa
    10861 ataaccgaaa agaaattgag caaaccctaa cccgtatttt taacgaaaaa tatgctggag
    10921 caatggaaaa acaagctaaa acgctagttg gtatttgggc aaaaattgaa gattattgga
    10981 caaatttcca aatgcaagtg atggaatcgg gagcatttga ctggattaaa aataaattgc
    11041 aatgggtgtt agacagttta gataaaatgg ctgaaaatgg cgagttgcaa aaatgggctg
    11101 aagatgtcgg agccgttatt caagaaacag tacaaggctt atgggctttt ggtgaaaaaa
    11161 ttattgaagt ggttaaatgg ttagcgagct tggcacggga gaataaaggg ctaattgcaa
    11221 cattcgttaa atggtctgct attcttggct ctagtttaac ggtgctagga gcttttgcag
    11281 tggtggcaag ttttgcatta tatcctgtag caagattggc tcttggtatc ggcaaattta
    11341 caggtgcaag caccttatta aataaggcat tatttgatag taatgataaa ttccgattat
    11401 tcaataaatc actttattca tcaggcacta cggctgcttt tgttaaatca aaatttaatc
    11461 agttagcaac tttaccaaat gtgctgggaa gtagttttaa taaattaggc ggtggcatca
    11521 aaatgctaat tccacagctt aaaacaaaag tattttggct caatatgcta aaaggtattt
    11581 taggcaagtt gtggagtgca atccgtttta ttttctcacc gttgaaatta ttacttggta
    11641 ttttctcgcc gattggctta gcgattacag ctatttcggt agcaggggta gcgttatata
    11701 gaaattggga gaaggtcaga gccttttttg gaggcttttt gcaaggatta tctaaaggtc
    11761 ttgcaccagt attagagaga tttaaacctt taggaaaact atttgaaact atatcaaact
    11821 gggttaaatc tacgtttaag tggttatccg atttattaac cccagcggat aaaacatcgg
    11881 aaagtttaga taaagcgagt tctgcaggag aaaaattcgg gcttgcattg gctggtgcaa
    11941 tagacttggt aacatcacct gttcagtggc tagtcgatca gtttaagtgg atttctgaaa
    12001 atatgccgag ttgggacact attggtgagg gtgtaaaaaa ggcagctact gcaattgttc
    12061 ccaccgagca cgccaagcag attactaaaa cggcagaaat gtcaaacaat atgtatgacc
    12121 ccaattatac tccaccacaa cttgagcaaa aatggattgg tggcttggtt ggtaacggta
    12181 aaggaagagg ttttgccaca ggcggctaca ccggcaatgg tggcaaatat gagcctgccg
    12241 gtattgtgca taagggcgag tatgtaatga ccaaagaggc aactgcacgc ttgggtgtgg
    12301 caaatcttaa ccggttaaat tatggcaaag ttgctgggct aactgcactt gcgtcaagtg
    12361 ttgcgtttgc tcaaccaatg cctgcggtca aaatcgacag cagaccaccg ctgacggcaa
    12421 gccaaccaag cccaacagtt gcaccggtgt cgcaaaatat ccatatcacc atcaacgcca
    12481 ccggtgggca agacccacaa gcaatcgccc gactggttgc aatggagttg gaaaaacaac
    12541 aacgccaagc acaagcaaga gcaagatcgt ctttgagaga caggggctaa tttgacaaag
    12601 tagaatgaaa agcggacaat gctctaaatt gtccgctttt tataggagca aatgatgttt
    12661 aaagaaaaag gatatgatga atttgtgaat gaatgtgtgc gaaaaggtag agaagaacac
    12721 aaagctggtt taggatttac gctagagcaa tctcgcttac atatcaaaaa aaccattgag
    12781 caaaaatcac aagagctaaa cgaatttcag cgtgaagtgg tttatggcta aaattaccat
    12841 taaaccacaa gcattgagtc aatttgacga gattgtaaaa agtgttatcg aatttaccgg
    12901 ttttgaaacg agtggtattc gattacaaag tgatattttt gacaaaatag agcaaattgc
    12961 atttatgcca ctctctggaa gagcaagaga agatgggaca agagaaactt tcgtcagacg
    13021 ttatcgtatt gtgtacgatt acgataggca ggcagatgaa gtaattatct tagctatcat
    13081 tcacagtagc cgactttacc cacgcccata atcagtaagc gacctaatcg gtcgcttttt
    13141 ctttgcctgt taaaacccat ttcacacctc gcatttatac ccaaagcctt tcgccttttg
    13201 caaaatatcc tcatttttta accgcttgta attgtaaaaa tgagtgagcc aaaccacgcc
    13261 gaacaaatcc gccgtttaga caatattatc cgacttggca ctattgccga ggtggattta
    13321 accacagcga ctgcacgggt caattcgggc ggtattacga ccgatttctt accgtggctg
    13381 acttttcgtg ccggtacatc gcaaacgtgg tcagctccaa cagttggcga gcaatgcgtg
    13441 gtgttaagcg tgagtggtga atttaccaca ggcgtgatct tatttgggat ttacacccaa
    13501 aacgccccga gccaatccgc cgatgagcat ctattccgct tttcggacgg tgcagaaatc
    13561 agctacaaca ccgcaagcgg tcaattaacc gtaaaaaatt gcaaagtggt gattgtgcag
    13621 gcgacagaat ctatcacgct cgacacgccc acggttaagg ccacaaaaaa tgtcgtgatt
    13681 gggggcaacc tatccgtgaa aggcacaacc tcatcgcaag gtgcaatcag cacacaaggg
    13741 gcggtaacag caaaaggcga tgtatcaggg gcgggaatca gtttaggcag ccaccatcac
    13801 attgagcaag gtgacggcag accaactagc ggagcaaaac cataatgaac cgagaaacag
    13861 gcgaacagct tgaagacgaa gtagagcata tcaagcagtc tatcaaagat attttgctga
    13921 cggcaaaagg cagtcgggta atgcggcgaa cctatggcag taatctctac aagctaactg
    13981 ataaaccgat tgccgcaagt ctgattatgc aactctccgc tgcgtgcgtg atggcgttgc
    14041 agcaatggga gccacgtata gcgatcaccc gatttaaagt ggaatttgcc gaagataact
    14101 acaataagct gatttgcacc ttagatttta cccttaagca ccgaaaaatc agcatcaaag
    14161 gaatgcgttt tacactatga gcgaaattgt cgatttatcc aaactccccg ccccgaaagt
    14221 actggaagaa ttggactatg aaaccttact ggcagagcgg aaagccaagt ttttatccct
    14281 ctacccagaa agcgaacgag cggtaatggc tgcacggtta gcgttggagt ctgagcctat
    14341 caccaagtta ctacaagaaa attgctattt gcagctactc gaacgccaac gcattaatag
    14401 tgcggctcaa gccacaatgc ttgcttatgc taccggtacg gatttagatg tcatcgcagc
    14461 caactttaat gttgagcggc ttgtagtgca agctgaagac ttaactgcaa gcccgcctat
    14521 cgtcgaagag ttagagcctg atgatgattt ccgtcagcgt gtgcagttaa aaattgaaag
    14581 tgtttcggtt gccggtccac ggaaggctta cacctttcac gccctgtctg ctaacggaaa
    14641 aattgccgat gtgtccgtca tatcaccaca gccagcttat gtaacggtaa cgctgctttc
    14701 tcgtgatggc aacggagccg tagcctcaga aatcatcaat gcggccaaaa ttgctctcaa
    14761 tgatgaagag gttagaccga ttgccgatag agtaaccgtg caaggggcaa gcattgtgga
    14821 atatgaaatt aatgcggtgt tgcatctcta ccgtggacct gagaaagagc ctattttaaa
    14881 agcggcaaaa gctaacttag aggcttacat caaccaaaca aaacgcattg gacgagatgt
    14941 gactcactca ggtatccacg ccgccttgca cgttgccggt gtgcaaaatg tggaaatttt
    15001 gcagccgaga actgatttgg tgctgacacc ttaccaagcc ggttattgtg tcaattacac
    15061 gctaaatgtt gaggtgagcg atgaatacag ttaaagcatt attgccaccc ggttcatcac
    15121 ttttggaaaa acgagctgcc gaatgtttgc aacaagcggt acaaaatccg attaaatttg
    15181 caaatttgat taatccacac aaatgccccg tgaaattttt gccctatctt gcgtgggcct
    15241 tatcggtgga ttattgggaa gagcattgga gtgaagaatt aaaaagagaa accattattc
    15301 gatcttttga agaacaccga aagaaaggca cagcaagtgc agtgcgaaga attgtggaat
    15361 ctctcggcta tgcttttgaa atccgtgagt ggtttgcgga aaaacggcaa cggcagcccg
    15421 ggacgtttag ggtttttgtt gagttaaaag ataaagggat tagcgaaaaa atctaccaag
    15481 aattagaaag gttgattgaa gatgcaaaac cggtatcaag gcacatcaca gaattagcag
    15541 tatcagccac ctcaaaaggc aaagcaaata tttttagtgg agcacacagt ggcgaaatta
    15601 ttacgattta tccacctaaa aagctccctg ttattgtcat taaaagcaaa atggatttat
    15661 ttagtgcaac aaacagtggc gaaattatta cgatttatcc taataagagg taaaaatgga
    15721 acaaaaatat aaaacaatat taacccatca cggtgagcga gtgatcgttg aggctcttgc
    15781 aaataagata ccagtgccac ttaaggaaat ggctatagga gatggtaacg ggtcatcaat
    15841 aactccaagt gcatctcaaa ccacacttgt aagagaagtt tatcgtgcgg aaattacaga
    15901 tttgctagaa gacccgcaaa atcgccatca gatgattgct gaattactaa tcccagaaaa
    15961 tgtaggtgga tttattgtcc gagaaatagg gttatttgat gaacaaggtg gtttggttgc
    16021 tgtagcaaat tgccctgaaa attataagcc tgtattagaa caaggcagtg gtaaagtcca
    16081 atattaccga atgattttac aagttagtag tagtgatgcg gtcaccttat cgattaacaa
    16141 taatattgtt tacgccacaa gaactgagtt taacgaattt gtaaataact tgagtagtcc
    16201 tgatggctat aaacacatcg gacgctgcaa atctgtagca gaactccgca ctat
//
LOCUS       DANLXK010000052        16236 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.052, whole genome shotgun sequence.
ACCESSION   DANLXK010000052 DANLXK010000000
VERSION     DANLXK010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16236
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(23..778)
                     /locus_tag="PXD88_001366"
     CDS             complement(23..778)
                     /locus_tag="PXD88_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6280944.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIELIITGGRVDNSSQSCIGNHSLTLLE
                     NINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQNAKQKVLVADSSKYGKYSLFRA
                     TQLDNFTQIITDKGLPIEYSQALSSNDFKLSLV"
     gene            complement(886..2112)
                     /locus_tag="PXD88_001367"
     CDS             complement(886..2112)
                     /locus_tag="PXD88_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL6280945.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNIMN"
     gene            complement(2109..3107)
                     /locus_tag="PXD88_001368"
     CDS             complement(2109..3107)
                     /locus_tag="PXD88_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL6280946.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(3118..4119)
                     /gene="pdxA"
                     /locus_tag="PXD88_001369"
     CDS             complement(3118..4119)
                     /gene="pdxA"
                     /locus_tag="PXD88_001369"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL6280947.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            4553..5917
                     /locus_tag="PXD88_001370"
     CDS             4553..5917
                     /locus_tag="PXD88_001370"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL6280948.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            6007..7542
                     /gene="ddc"
                     /locus_tag="PXD88_001371"
     CDS             6007..7542
                     /gene="ddc"
                     /locus_tag="PXD88_001371"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL6280949.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            7645..8007
                     /locus_tag="PXD88_001372"
     CDS             7645..8007
                     /locus_tag="PXD88_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL6280950.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQVL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(8097..8684)
                     /locus_tag="PXD88_001373"
     CDS             complement(8097..8684)
                     /locus_tag="PXD88_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL6280951.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            8860..9408
                     /gene="napF"
                     /locus_tag="PXD88_001374"
     CDS             8860..9408
                     /gene="napF"
                     /locus_tag="PXD88_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL6280952.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            9401..9667
                     /locus_tag="PXD88_001375"
     CDS             9401..9667
                     /locus_tag="PXD88_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL6280953.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            9706..12204
                     /gene="napA"
                     /locus_tag="PXD88_001376"
     CDS             9706..12204
                     /gene="napA"
                     /locus_tag="PXD88_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL6280954.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            12293..13198
                     /gene="napG"
                     /locus_tag="PXD88_001377"
     CDS             12293..13198
                     /gene="napG"
                     /locus_tag="PXD88_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL6280955.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            13198..14076
                     /gene="napH"
                     /locus_tag="PXD88_001378"
     CDS             13198..14076
                     /gene="napH"
                     /locus_tag="PXD88_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL6280956.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            14122..14550
                     /locus_tag="PXD88_001379"
     CDS             14122..14550
                     /locus_tag="PXD88_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL6280957.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            14561..15169
                     /locus_tag="PXD88_001380"
     CDS             14561..15169
                     /locus_tag="PXD88_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL6280958.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(15231..16073)
                     /gene="cpdA"
                     /locus_tag="PXD88_001381"
     CDS             complement(15231..16073)
                     /gene="cpdA"
                     /locus_tag="PXD88_001381"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL6280959.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDNNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         4829 a         3158 c         3527 g         4722 t
ORIGIN      
        1 tgaaaaaaga ccgcttgtat gattaaacta atgatagctt aaaatcatta cttgacaagg
       61 cttggctata ttcaataggt agtcctttat ctgtgataat ttgtgtaaag ttatcgagtt
      121 gagttgcacg aaataaagag tattttccat atttgctgct atcggcaacc agtacttttt
      181 gtttggcgtt ttgttggagc attcttttta aattagcttt ctcttctgta ggtgctgtaa
      241 ctcctttttc taagctccaa gaattacagc tcacaaaagc aatatcagga ttaatatttt
      301 ctaataaagt taaactatga ttaccaatac aagattgact actattatct actcgtcccc
      361 ctgtaataat taattctatt tgcttatatt cagagagtaa taaagcaata tgtagatcag
      421 ttgtaatcac tcgaagtggc atatgagcga tttttttcgc aatgcatagc gttgtagtgc
      481 cagcatctaa taaaatagaa tttcccggtg aaataagcga aacggcatat tcagctatgc
      541 gttctttttc gacaatttgc ttaaattgct tctcatttgt tgttggttga aacggtataa
      601 attggtttaa gctgacccct ccgtgtgtgc gaatcacgac gccttcttca tctaatttta
      661 ttaaatcacg gcggatagtt gcaggagaag cctcagtcac ttttaccagt tgctctacgg
      721 tagcaatatt gtggtttttt aggaatagta aaatttgttc tagacggttt ttagacatat
      781 aaactctcta atttttaact gcttttacta taagtaattt tttaaaaata agatagttaa
      841 aattaaagaa cctaaaacat tgttgcttta ggttctttgt tgttactagt tcattatatt
      901 gcttaagagt gtgttgtttc caaatcctcc agatttagtc attacagtga tgcctgagta
      961 gttgcccttt tcaatggagc ataaaggaac gcccggtact accgcatatt gtacattcat
     1021 ctctgttaca ttcatttgat ctaataatgc tgctgcacca tctccaccaa ataatataag
     1081 gctatcaaat ttttcattat caaggcagaa tttacttaaa tcagctaaat gttgagaaat
     1141 ttctttagaa gtttccgtga tattggcaga ttttgcattt acaacttttg cagggtttgc
     1201 ccgaataata acatgatctc tactaaaacg tattagagcg tttaattgta gtttcagtga
     1261 atgttctgat tgcgagtagt taatcaactg tgaaggcgaa ggattaaata caatagattt
     1321 tcctcctaaa gttgaaatat attcatcaac ttgcagttgg cttgtttcgt gaattgaggt
     1381 tacgacaatt aatgctctac ctaatttaag atttcgctct ggttgttgtt gattttggat
     1441 atttttcaac ttctgtgcca atccggctga gccaacagga ataattttat tacctatgtg
     1501 atttatgact tgggcaatca ttgagagatc ttcgtgcgtt ttagcatcaa taacgatctg
     1561 tttatattca ctattttcaa tagatgcctg caaattatcg accgtatcac acgggattac
     1621 ttgagcatca ggcaatagtt tttgcataga agatgaatgc acagggcaga taggatcttt
     1681 tcctgaagca gtttcattta caggaacacc attaacatat aaatgaccag cttctatagt
     1741 tcttcccatt tctggatatg caggacaaat aattgcttta acatcgggat ataaaccagc
     1801 ccaagcttta atagcacctt caatctgata tttaacagag cctctcattg tggaatcaat
     1861 tttaaggtaa atttgcccga tactattttg aatagcattg ctaattgcaa tttgagtcag
     1921 ctcttttgct ttctctccaa ttgctcttga atctgtagaa acagaaatta cttgggcttt
     1981 atcaggatga atttgggcta atgccgaaac tttagttttt aagacagtgt caaatcctga
     2041 ttcagcaaac ataaccgcgg tatcatttgc accagtaagg tcatcagcaa taactaagag
     2101 tgtctctttc atagattttc tccttttata gtgtcttgtt ctaagccacc ttgacgtttt
     2161 aaaacccacg ctgcaaataa tggagctaag attgctgaaa ctaatacagc tgcggcaatc
     2221 tgtgcagtcg cagtttgaac aaaaggtgct aatgtagggt ctgcttgagc aacaatttca
     2281 ggtgtaataa tggcatttcc agcagtagtt cctgctgcaa acccgattcc tgattgatta
     2341 ccacgtctta aaattgtttt gtaaccgata aatacaagaa aacctgtaaa gagagaagct
     2401 acgataccta aaataattcc tgttgctcct ccagtaataa tagattgcag attgattcct
     2461 gttcctaatg caaaagcaaa gaaaggaatg actattgcac ctgttggttt cattaactct
     2521 gtccatttag gatctaagtt accaataacc ataccaataa taagaggaat aacagctgca
     2581 agcattaatg aaagaggaat atctgctaat cctgatacac ctaaaaatag taaaacaaag
     2641 aaaggtccat cattaacagc cgaagcgaca taagctcctt tatctctata atcaccatat
     2701 ttccctgtaa acgctaacca aataccacca tttgaatttg caacaacagt tagcatagct
     2761 aataaagaaa cgcccataac accatcatta cctacccata atcctaaaat cacaactaaa
     2821 agagcgggaa taatagtttt aaatagtaat acaacaccgg tatgggcaag tacaggtcca
     2881 gaacttctca cggtaatttg catacctgta gcgaaaatta atagtgcaat aagtggtcct
     2941 gctgatgatt tgaataaagc cgtcgtaaat gaacctaaat ttaaaaattc aggaaagaat
     3001 gtaccaataa tagaaccaag aattagcggt attaccattg caccgccagg aattttattc
     3061 ataccatcat atatcgggac gatggattta gatgtttgag tagacatatt aatctcctta
     3121 gtgtgtcgca tatttgatat ttgccatttt tgcacccaaa tagagtgctt cagtcatact
     3181 acgactatct gctgttcctt tgcctgctat tgggaaagca gttccgtgat cgacagatgt
     3241 tcgaataaat ggaagaccga cagtaacgtt tacacctgta tcaaagccta ataatttgat
     3301 agggatatgc ccttgatcgt gatacatcac aacaacaata tcgaattcat ttaggttagc
     3361 tgcacggtga aataaagtat ccggagggac aggccctgta acattaaacc ctttggcttg
     3421 agcctcttga attgcgggaa caatttcttt ttgatcttca tcgccaaaca ttccattttc
     3481 acctgaatga ggatttaaac cagcgactgc aatacgaggt tctttaaacc caagaatgcg
     3541 agcattttct tctgctaaat caataactgt agcaactcgt tctttggtaa ttaaatcaca
     3601 ggctttacga agttggacgt gagtagtaac gtgaataaca ttgagttttt cactggttag
     3661 catcattgag taatctttag tattactgag ggttgcaagg atctctgtat ggccaggaaa
     3721 tggtttacca cctgcgtgta gggcttcttt attcagtggt gctgtaacaa tagcgtggat
     3781 ttttcctccc attgctaaat taactgcctc ttcaatatat tcataagctg cttttccagc
     3841 acgcggatca acttgagcaa aaggcaaatc ttcaggcagg ttattcaaat ctaaaatatc
     3901 aataacgcca tattcggcta caaagttatc tagattattg agaattctta atttcaattc
     3961 tgaatgaaca ataggtaagg ctcgttgtat aatttttcga tcaccgatca caacagggtg
     4021 tgctaactca taaatccgtt gattagctaa tgctttaata ataacttctg gtccgatacc
     4081 ggcggcatct cccatcgtaa ttcccaatat aggtttcata tttactcctt gattgaaatt
     4141 aatcattttg aacgaagtat agcttatatg aaatcataaa agtgtgataa acatcacaaa
     4201 agtgaacttt tttaatctta ttgatttaat ttaatcaatt ttaaggtggt aaattggata
     4261 gggtatgaaa gtgaaaggca tttattgcta gataaaagct tcccttttca ataaaaaaga
     4321 gtatcatacg ctctcttaaa cgtaacccta catttaagtc tgtttccaac ctatcccaat
     4381 ttctttattc cttaggggca tatagggtaa aaacaaaaaa gctgaaacgc tttttttaat
     4441 aagtagcgag tcaaatgccc catggcatct attcttttag gaatagaaag cttaggcttt
     4501 ccgcaaggca cccgacttat ttttttcacc tcttgtagaa ggtttatttt caatgacaat
     4561 taaaactcct attcaagccg ttcttgcttc aaaccaatat tttttagatc gccaagatgc
     4621 aatggaatca aacgtgcgta gctacccacg taaattacct tttgcttacc aaaaagcaca
     4681 aggcgtttgg gtaactgatg ttgaaggcaa tgaatacctc gatttcctag caggtgcagg
     4741 aacgcttgca ttaggtcata accaccctaa attaatccaa gcagttaaag atgtattaga
     4801 cagtggttta cctttacact cgttagatat tacgactccg ttaaaagatg cttttacgga
     4861 agaattactc tctttctttc caaaagataa atatatcctc caatttactg gcccgtctgg
     4921 tgcagatgct aacgaagcgg caattaaatt agccaaaacc tacactggtc gtggcaacgt
     4981 aattgctttc tccggtggtt tccacggaat gacccatggt gcgttatcgc tcaccggtaa
     5041 tttaagtgcg aaaaatgcag tacaaggctt aatgccgggc gtacagttta tgccttatcc
     5101 gcacgaatac cgctgtccgt ttggcattgg tggcgaagcc ggtgcaaaag cagttgaaca
     5161 ttattttgag aactttattg aagatgttga aagtggtgtg gtaaaaccgg cagcggtgat
     5221 ccttgaagcc attcaaggtg aaggcggtgt ggttccggct ccaatcagct tcttacaaaa
     5281 agtgcgtgaa gtcactcaaa aacacggcat cttaatgatt gtggacgaag ttcaagctgg
     5341 tttctgccgt tcagggaaaa tgtttgcctt tgaacacgca ggcattgagc cggatatcgt
     5401 agtaatgtca aaagcgattg gtggtagctt accgcttgcg gtattagcga tcaaaaaaga
     5461 gtttgacgct tggcaaccgg caggtcatac cggtacattc cgtggtaacc aattagcaat
     5521 ggcaaccggc tatgtatcgc ttaaaattat gcgtgaagag aatttagcga aaaacgcaca
     5581 agagcgtggc gaatacttaa ctaacgcatt acgtgaatta agcaaagaat taccttgtat
     5641 tggcaatgtg cgtggtaaag gcttaatgat gggaattgat attgttgatg aacgtcagcc
     5701 aaaagatgca acaggtgcat acccgcgtga ttgcgattta gccgttgcaa ttcaaaaata
     5761 ctgctttaaa aacaaattgt tattagagcg tggcggacgt ggcggtaatg tggtgcgtgt
     5821 tctttgtgcc gtgaatatta cccaagcaga atgtgaagag tttattaaac gctttaaaca
     5881 atctgttgct gaagcagtga aagcggtgcg tggttaatag ttagaatggt aggagcgaaa
     5941 catttttcgc cctaatgtaa aaaggggcga atatttattc gcccctacac caataggata
     6001 gaaataatgt caaacctaga aaaacacaga caatccctgt tttgtagcga tccaaaatcg
     6061 attgcggatt atgaatcggc aatgaataac gctgtgaaag cggtttcaga ctggctgaaa
     6121 gaagaaaaaa tgtacaccgg tggctcaatt aaagagttgc gtgccaaaat caacggtttt
     6181 aacccaaccc aagctggtgt gggcgtgcaa aaatcactgg agcatttggt ggaaattttc
     6241 ttaaagccaa gcctcaaagt tcaccaccct cattctttgg cccacttaca ttgcccgaca
     6301 atggtaacca gccaaattgc agaagtgtta attaatgcca ccaaccaatc aatggactct
     6361 tgggatcaaa gcccggcagg ttcgattatg gaagagcatt taattgactg gctacgtcaa
     6421 aaagtcggct atggcaaagg aacttcagga gtctttacct caggtggtac gcaatcaaac
     6481 ctgatgggcg tattattggc tcgtgactgg gcgatagcga accattggaa aaaggcagac
     6541 ggttcagagt ggtcggtgca agccgacggt attcctgccg atgcaatgca aaaagtgaaa
     6601 gtggtttgtt ccgaaaacgc tcacttctcg gtgcagaaaa atatggcaat gatgggaatg
     6661 ggtttccaat cggtagtgac tgtaccgtca aatgccaatg cacaaatgga cgttgaagct
     6721 cttgcgaaaa cgttggcgga tttaaaagcc gaaggcaaaa ttgtggcttg tatcgtcgca
     6781 accgcaggga cgaccgatgc cggtgcgatt gatgatttaa aagcgatccg taaattagcc
     6841 gatgaacatc aggcttgggt tcacgttgat gctgcttggg gtggtgcatt attactgtcg
     6901 aaagatttcc gccacttctt agacggcatt gaattaaccg attccattac ccttgatttc
     6961 cacaagcatt tcttccaatc aatttcgtgt ggggcattct tgctaaaaga tgaagcgaat
     7021 taccgcttta ttgattacaa ggcagactac ctgaattcag aatatgacga agaacacggc
     7081 gtgccgaatt tagtgtcaaa atcattgcaa actacccgcc gttttgatgc gttaaaatta
     7141 tggtttaccg ttgaagcctt gggtgaggag ctatacgctt caatgatcga ccacggggtt
     7201 tatctttcta aagaagtgga agcctacatt aatgccaccg atggcttgga aatgttagtg
     7261 ccggcacaat ttgcctcagt cttattccgt gtcgtaccac aaggttaccc ggcagaattt
     7321 gtggatacct taaaccaaaa tgtggcagat gagttatttg ctcgtggcga agctaacatt
     7381 ggtgtgacca aagtcggtga gcatcaatca ctgaaaatga ctactttaag cccgattgca
     7441 acgcttgaaa acgtaagagc attattagct caggtgttgg cagaagcaga tcggattaaa
     7501 gattcgattg taaatggaac ttatgttccg ccaattgatt aaactgcgtt aaaaataaaa
     7561 aggtgttttc gacatttatt tgtgttttaa tgtttgcatt cggtagtctt tatcgaatgc
     7621 aaattttttt aacaaggagt ttttatgaaa aaagtcctgg gtttaacatt gatggcaatg
     7681 gcgttatcgg cgtgtaattc aactgcttcc aacggttctt cacaagcaaa tacaggtgtt
     7741 gcaccggcga atgtgattag cgtgaaacag gtgttagcgg cagcagatga cagctacgtg
     7801 acggtagaag gcacactctt aaacaaagtc ggtgacgaaa cttacttatt taaagatgcg
     7861 acagggcaaa tccgtgttga gattgacgat gaagtatggg caggtcagca cgttggtagc
     7921 gaaggcaata aagtccgttt atacggagag attgacaaag gtttcaataa aaccgagtta
     7981 gatgttaaaa cactcactgt tctgtagaag atcaaacctt aatttggttc cccgccttgt
     8041 ttggcggggt ttttacgtta attaatcaaa ccatcctttt gcaaaaaaac gcaaaattat
     8101 accgcttgtt ccttcaatat tgtgctacaa gatgctgtga tttgctgcaa aatagcggtg
     8161 taatcagtct cttttaaacc aatattaccg aaatagtgca tttttacatc acgaatccca
     8221 cagaactcaa acagcccttt tcccagcgta tgttcaaatg ctgctaaaaa gccttttcgt
     8281 tcatattttt cattggaatt accgagcgtt acaaattgtt gcattttttt gccggtcagc
     8341 aagccgatac tttcaatttc cccgttacga taggcaaaat cataacttaa caccctgtct
     8401 aaatagcctt ttaaaattgc cggaaagccc atccaccaaa gcgggtaaat taacgtaatc
     8461 acatcagctt caagccaata ttgatgctca attgccacat ctgcttcata gtgtttactg
     8521 agtgtgcctt gaaattccgc ccagtctaat atcggcttga agttgagttg gtagagatct
     8581 cgtacaacca ccttatttgg aacggaagct gctatcgttt tttccaaaat cgcatggtta
     8641 aagctggagg gattcgggtg tgcgtaaata atcaggtgat tcatagcgtt ttcctttact
     8701 gtgtcgaggc agctactaga agattttagc gaaactttct ttgatgaaaa tcaatatttt
     8761 ggcgaatata ccggcaaata ccccgtttga ggaatgaacg gttttaagtg aacattagat
     8821 aatttagcct attatagtga tgagtaaaaa ggtgttttct tgactgatta tcctaatcaa
     8881 tcacttcctc gccgtagctt tttgcgaggg caatttttag actcgttaaa aagccaaaaa
     8941 gtcagtcagc aagggtatga gccgattcgt ccgccttggg ctaatttagc aaatttttta
     9001 gaaaaatgca ccgcttgcgg taactgcatt caggcttgcg aaacccagat tattgtaaaa
     9061 ggtgctgcgg gctaccctga aattgatttt agccgtggtg aatgcacttt ttgtgaaaaa
     9121 tgtgtgcatt cttgcgaggc agaggtattc cgagcagttt cagaacagcc ttggagccat
     9181 aaaattgaga ttcaagccgg ctgtttatta aagctcggaa cggaatgccg aagctgtggc
     9241 gatagctgtg agatgagagt gattcgtttc cgcccgagtt taggtggcat tgccgaaatg
     9301 gtattaaatt tggaaagctg taatggctgt ggggcttgtt tgagcgtttg tccgacaagt
     9361 gcgataaaaa ttcagccatt acaaacacag gcaaacagag atgagtgaaa aattatccga
     9421 acaggaaaac tggtatgtgt gcagtctcgt ggtgcaagca aaaccggaaa aattggaaga
     9481 agtaaaagcc gagattctga agattcctca taccgaaatt cacggtgaga aaacagatga
     9541 aggcaaattg gtcgtgacga ttgaaagcaa tgtgcattta gccctttccg atcgaatcga
     9601 tcaagtaaga gatattaaag gcgtgattgt ggtgtcttta atttctaatt acattgatga
     9661 acagtgatta atgattattt ttgaagccaa acgtgggaca tagttatgga actcaatcgt
     9721 agagatttta tgaaagcgaa cgccgctgtg gcagctgctg cagccgcagg aattatgatt
     9781 cctgtgaaaa acgttcaggc agatgacacc ggtattcgtt gggataaagc cccttgtcgt
     9841 tactgtggta caggttgtag cgtgctagtc ggtactaaag acggtaaagt agtggcaacc
     9901 caaggtgacc cggatgcaga agtaaaccgt ggtttaaact gtattaaagg ttatttctta
     9961 tccaaaatga tgtacggtgc agaccgtatg caagagccaa tgttgcgtat gaaagacggt
    10021 aagttcgaca agaacggcga tttcacgccg gtttcttggg atcaagcctt tagcattatg
    10081 gcggagaaga ttaaaaccac tattaaaaat gacggcccga atgctgtagg tatgttctca
    10141 tcaggtcaaa caaccatttt tgaaggttat gcgaaagtga aactttggaa aggtggtttc
    10201 cgttcaaata cgattgaccc gaatgcccgc cactgtatgg cgtccgctgc ggttgccttt
    10261 atgcgtacct ttggtatgga cgagccgatg ggctgctata acgacatcga aaaaaccgat
    10321 gcgttcgtgc tttggggttc aaatatggca gaaatgcacc cgattttatg gtctcgtatt
    10381 tctgatcgcc gtttatcaga caataaagtg aaagtggtgg taatgtccac ttacgaacac
    10441 cgttcgtttg aattagccga tacaccgatt atcttcaaac cacactcaga tttagcaatt
    10501 ttaaactaca ttgcgaacta cattatccaa aacgataaag taaattggga ttttgttaac
    10561 aaacacacca aatttaaacg gggtgaaacc aatatcggtt acggtttacg tcctgaacac
    10621 aaattacaac aaaataccaa tgcgaaaact gccggtaaaa tgtatgacag cgattttgaa
    10681 gagtttaaga aaatcgttgc cccttataca ttagaagaag ctcaccgtat ttcaggcgtg
    10741 ccgaaagatc agcttgaaac attagcgaaa ttatatgcag atcctaacca aaaattagtg
    10801 tcgttctgga cgatgggctt taaccaacat acccgtggtg tgtgggtaaa ccatatgatg
    10861 tacaacgtcc atttattaac cggtaagatc gcattagaag gttgtgggcc gttctcactc
    10921 acgggtcagc cgtccgcttg tggtactgcc cgtgaagtgg gtacatttat tcaccgctta
    10981 ccggcagata tggtggtcac aaatccgaaa caccgtgaga ttgtagagaa ttcttggaaa
    11041 ttaccggctg gagcaattcc tgatgtaccg ggctttcacg ctacagctca aagccgtgcc
    11101 ttaaaagacg gcaaaatgaa attcttatgg cagatgtgta ccaacaatat gcagggcggc
    11161 ccgaatatca atgaagagat cttcccgggc tggcgtaatc ctgaaacctt tattgtggtt
    11221 tcagatccgt acccatctgt ttcagcagtg gctgctgact taattcttcc aacctgtatg
    11281 tgggtggaaa aagaaggggc ttacggtaac gcagaacgcc gtacccaatt ctggcgtcag
    11341 caagttaaag ggccggcaaa tgcccgttca gatacttggc agttagtaga gttctctaaa
    11401 tacttcaaag tagaagaagt atggccggaa gagttattag ctaaagcacc ggaattgcgt
    11461 ggtaaaactc tatacgaaat cctttaccgc aacggcaaag tagatagcta ccaagtgcca
    11521 actaacattc cgggctatat gaatgacgaa gcagatcact tcggttacta cattcaaaaa
    11581 ggcttatttg aagagtatgc ggaatttggc cgtggtcacg gtcacgattt agccgacttt
    11641 gacacctacc acaaagtacg tggcttacgt tggccggtgg taaaagacga gaaaaccggc
    11701 gaatacaaag aaactttatg gcgttaccgt gaaggctatg acccatacgt taaagccggt
    11761 gaagaagtgg cattctatgg caatgcggac aaaaaagcag tgattttagg tgtgccatac
    11821 gaaccacctg cggaagcacc ggacgaagaa tatgacttat ggttctgtac cggtcgtgta
    11881 ctagaacatt ggcacaccgg tacgatgacc cgccgtgtgc cggagttaca taaagcattc
    11941 ccaaccaact tggtttggat gcacccgaat gatgcgaaaa aacgaggctt acgtcacggt
    12001 gataaagtga aagtgatttc acgccgtggt gaatatgtat cgaacttaga tacccgtgga
    12061 cgtaataaat gtccggaagg tttgatttac tcgactttct tcgatgccgg tcagttaatc
    12121 aacaaagtga cacttgatgc gactgatcca atttcatttg aaaccgactt caaaaaatgt
    12181 gcggttaaag tggtgaaagc ttaattgtag gggcaaatta tttgcctcag acaagcggtc
    12241 aaatttgcaa atttttttac aaaaacgacc gcttacctaa gaggaaccca caatgaaaat
    12301 ggatccaaat cgtcgccagt ttttaaaaaa tgcaacccgt accgcagccg gtgtttgcgg
    12361 tgtaggaatg attttagggc tacagcaaca acaaagtttt gcccgtcaag gggtagcact
    12421 acgcccaccg ggtgcattgc cggagcaaga tttcctgagt gcttgcaccc gttgcggaca
    12481 atgtgtgcag gcttgtcctt acgatatgtt gcatttggca tcgcttattt caccagtgga
    12541 agccggcacg ccatacttta ttgcacggga taaaccttgc gaaatgtgct tggatattcc
    12601 ctgtatgaat gcttgcccaa ccggggcatt aagcgaagag ctaaaagaca ttgacgatgc
    12661 acgaatgggg cttgcggtgt tgctcgacca cgaaacttgt cttaactggc aaggcttgcg
    12721 ttgtgacgtg tgttaccgtg tttgtccgtt aatcgacaaa gcgattactc ttgagaaagt
    12781 gcataacgac cgtacctcga ttcacgccaa actgattccg accgtgcatt ctgatgcttg
    12841 caccggttgc ggtaaatgtg aacaggcttg cgtattggaa gaggcagcga tcaaagtgtt
    12901 accgatggat ttagccaaag gcttgctcgg tcgtcactat cgtttaggct ggcaagagaa
    12961 acaaaatgcc ggtaaatcgc tgattgaaga tgttcaccca gagggtttac gcccagctta
    13021 tgatgccaga atgccggaag gcttacacga gccggtgtat cagcatatgg aagtaaaacc
    13081 tgatgtgaaa gtggctacgc caagtcgggc gacacaaaac tatgtgccga actctacgac
    13141 ggtggaagct ccggagcatt tccctgattt agacttgaat ctcaaggggg tgaaataatg
    13201 gcagccaatt ctccaaaaaa tgcgggctta gaggctcgtc agaaactagg ttggtggcac
    13261 gcttaccgct ttttgatttt aagacgctta agccaactca gcattatttt gatgttttta
    13321 agcggcccac tttggaatgt ctggatttta aaaggaaact acagcggtag cttattacta
    13381 gataccgtgc cgatgacaga cccattaatg accgctgaag tgctggcaac cggctatcgc
    13441 cctgaatgga cggtattggt tggggcgtta attatggtgg cgttttacgg cattgtcggc
    13501 agcaagctgt tttgtagttg ggtctgcccg atgaatatgg taacagatac tgctgcttgg
    13561 ttaagacgca aactcggtat tcgccaaact gctaaaattc cacgcaattt acgctatgtg
    13621 attttggcgg tgattttagt cggtagtgcg atttccggaa cactattgtg ggagtggatc
    13681 aacccggttg cggctctcgg tcgggtgttt gtattcggtt taggggcaac gctttggctg
    13741 gttttagtgg tgttcttgtt tgacttattg gtggcagaac atggctggtg tggtcatctt
    13801 tgcccgattg gtgcaacgta tgccttaatt ggggcgaaaa gcctgattaa agtcaaagtg
    13861 gtagatcgta accgttgcga taattgtatg gattgttaca acgtttgtcc ggaacctcaa
    13921 gtgttgcgtg tgccgctaca cggtaaaccg gaggaaagca cggttatctt atctaaagat
    13981 tgcattacct gcggacgttg tattgacgtt tgtgccgaaa atgtatttgc cttcggaatg
    14041 cgttttcaag gcagtattga tgtgaaaaat atttaatttt tatctttttg aaaacaagaa
    14101 ttttaatgga gtgaacctca aatgagaaaa tatctcgcct tcattttagc cgtgatgtcc
    14161 ggctttgcaa tggcggaagc ccctaagtta tccggatcaa ttgatgagac aaccgaaagt
    14221 gttgcaccgg gatttcataa cccacaaaaa gatgtgggca cgattccaac cactttccct
    14281 ttccaaccac cgcttgttcc acatagtatt cgtggcttac aagtgagcaa aaacgtaaac
    14341 cattgtttag gttgccacgc tattgaacca tctaaaacca caggtgcgac ccgtttaccg
    14401 ccaagccatt ttaccgaccg tgatggcaag gtgtacgaaa acgaatctcc tcgtcgttat
    14461 ttctgtttgc aatgccacgt gcaacaaact gatgtaaacc cgattattca aaataaattt
    14521 gaatctgtac gtgaatctca agctaaataa ggagtaagta atgttgagaa gattttgtaa
    14581 ctggttacgt agcccaagca aaatggcaat tggtgctgta atccttattt ctgcattagg
    14641 tggtattttc gcttggagtg gttttaatgc agggttagca atgacaaata ctgaagagtt
    14701 ttgttcagat tgccatatga acgatgttgt gccggaatac cgtgcctctg ctcactattc
    14761 aaaccgcagc ggtgtgaaag cgatttgttc agattgccac gtaccgcacg aattctttcc
    14821 aaaatggcaa cgtaaaatca tagccgcaaa agaagtttat gcacacttta ccggtaaagt
    14881 agataccaaa gagaaatttg aagctcatcg tggcgaaatg gcagaacgtg aatgggcacg
    14941 tatgaaagcg aacagctctc aagagtgccg taactgtcat aattttgatg atatggactt
    15001 cactcaacaa aaaaacattg cgcagcaaat gcacgcattg gcacaagagc aaggtaaaac
    15061 ctgtattgac tgccacaaag ggattgcaca caatctccca catatggaag cgatccagaa
    15121 aaactttatc cctgatgatt tgctgaaaaa agcagaagag aagaaataac ttaacgtgtt
    15181 tcaatagaaa accctcaatt tccattgagg gtttcttttt agtagccaag ttagtaacca
    15241 atggcattga catttggtaa aaaatcgttg gaatttaacc gcttgacgac cgtttctatc
    15301 gtgccgtttt cgtgcaattc aatttcacgc cagccttgtg gttgtaagtc taaggtaaac
    15361 tggtcgcaat tcggcttaaa ttgaatgcaa gtagatgggg tggcataaat cggaatacca
    15421 tgccaaatat catcaacctg ctgatgaata tgaccatgca caatcgcttt tacattctta
    15481 aattttgcga aaatctcgga taattcattg ctgtttttta agctatgctg atccagccac
    15541 gctgagtttg tcggcaaaat attgtggtgc agagcaacca aggtaaaccg ttgcggatat
    15601 tgtgccaatt tttcttctaa ccatttaagc tgtgagtaag agagttcgcc ataaggcata
    15661 cctaccacct gggtatttag catcagaagc tgccattgct caccgagtaa aatttgttta
    15721 tggggaagga tatgtttata ttgcgccaaa atttctgaca tactcggctg aacatcgtga
    15781 ttcccctcta gccacactat cggcgagttt agcgaattag ttatctgtgc aaaatagtga
    15841 taaccagcaa tattgttatc ttgaatcaaa tcacctgtgg caagaactag atcaaaatat
    15901 tgcttcgctt gtttgtttat ttgctcaata actgccgaaa aactttttac tgttttgaca
    15961 ttaagtagag tttcctccgg attggagaaa aggtgagggt cagttatttg taataactta
    16021 attacccctg ttacgggtaa cttaatatat tcgtgcattc gttttgcatc cattcaaatt
    16081 ctagtaattt ttaactggtg agattctatc agtaagctaa aagtaaaaat gtggactatg
    16141 ccgcattttt gaaaaaaagt gagattaatc aaaaaaaatt tattattttc gatagctaag
    16201 acaatggtaa gtttgattaa tactttcata ttgtaa
//
LOCUS       DANLXK010000053        16231 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.053, whole genome shotgun sequence.
ACCESSION   DANLXK010000053 DANLXK010000000
VERSION     DANLXK010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16231
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            86..1504
                     /gene="leuC"
                     /locus_tag="PXD88_001382"
     CDS             86..1504
                     /gene="leuC"
                     /locus_tag="PXD88_001382"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL6280960.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1517..2119
                     /gene="leuD"
                     /locus_tag="PXD88_001383"
     CDS             1517..2119
                     /gene="leuD"
                     /locus_tag="PXD88_001383"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL6280961.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2191..2655)
                     /locus_tag="PXD88_001384"
     CDS             complement(2191..2655)
                     /locus_tag="PXD88_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280962.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(2679..3185)
                     /locus_tag="PXD88_001385"
     CDS             complement(2679..3185)
                     /locus_tag="PXD88_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280963.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(3208..4185)
                     /gene="dusA"
                     /locus_tag="PXD88_001386"
     CDS             complement(3208..4185)
                     /gene="dusA"
                     /locus_tag="PXD88_001386"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL6280964.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
     gene            4536..5513
                     /locus_tag="PXD88_001387"
     CDS             4536..5513
                     /locus_tag="PXD88_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL6280965.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            5500..7167
                     /locus_tag="PXD88_001388"
     CDS             5500..7167
                     /locus_tag="PXD88_001388"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL6280966.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            7171..7590
                     /locus_tag="PXD88_001389"
     CDS             7171..7590
                     /locus_tag="PXD88_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280967.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(7825..8586)
                     /gene="nudC"
                     /locus_tag="PXD88_001390"
     CDS             complement(7825..8586)
                     /gene="nudC"
                     /locus_tag="PXD88_001390"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL6280968.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(8579..9262)
                     /locus_tag="PXD88_001391"
     CDS             complement(8579..9262)
                     /locus_tag="PXD88_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL6280969.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(9259..10107)
                     /locus_tag="PXD88_001392"
     CDS             complement(9259..10107)
                     /locus_tag="PXD88_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6280970.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(10107..10592)
                     /locus_tag="PXD88_001393"
     CDS             complement(10107..10592)
                     /locus_tag="PXD88_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL6280971.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(10594..11916)
                     /gene="pepQ"
                     /locus_tag="PXD88_001394"
     CDS             complement(10594..11916)
                     /gene="pepQ"
                     /locus_tag="PXD88_001394"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL6280972.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            11927..12169
                     /gene="tusA"
                     /locus_tag="PXD88_001395"
     CDS             11927..12169
                     /gene="tusA"
                     /locus_tag="PXD88_001395"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL6280973.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(12236..12667)
                     /gene="rraB"
                     /locus_tag="PXD88_001396"
     CDS             complement(12236..12667)
                     /gene="rraB"
                     /locus_tag="PXD88_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL6280974.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(12682..13293)
                     /locus_tag="PXD88_001397"
     CDS             complement(12682..13293)
                     /locus_tag="PXD88_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL6280975.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(13295..13711)
                     /locus_tag="PXD88_001398"
     CDS             complement(13295..13711)
                     /locus_tag="PXD88_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL6280976.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(13715..14545)
                     /locus_tag="PXD88_001399"
     CDS             complement(13715..14545)
                     /locus_tag="PXD88_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL6280977.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(14882..14997)
                     /gene="rrf"
                     /locus_tag="PXD88_001400"
     rRNA            complement(14882..14997)
                     /gene="rrf"
                     /locus_tag="PXD88_001400"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(15159..>16231)
                     /locus_tag="PXD88_001401"
     rRNA            complement(15159..>16231)
                     /locus_tag="PXD88_001401"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT         4950 a         3626 c         3168 g         4487 t
ORIGIN      
        1 atatcagcaa gcggtcattt ttgcaaaatt ttttgcaaat ttaaccgctt gtattaaaag
       61 ttaccctttt gagttggaac attttatgca acaagccaaa accctatatc aaaaactatt
      121 cgactcacac gttgtgtatg aagccgaagg cgaaacgccg attatttata ttaaccgcca
      181 cttaattcac gaagttacca gcccgcaagc gtttgacggc ttgcgtgttg ccggtcgcca
      241 agttcgccaa gtcagtaaaa ccttcggcac aatggaccac agtatttcaa cccaagtgcg
      301 tgatgtacag caacttgaag ggcaagcgaa aattcaagta ttagaattag aaaaaaactg
      361 cgaagaaacc ggtatcccac tgtttgacat cactaaaaaa caacaaggta tcgttcacgt
      421 aatggggccg gagcaaggct taactttacc cggtatgacc attgtatgtg gtgactcgca
      481 caccgccact cacggggcct ttggtgcgtt agccttcggt atcggtactt ccgaagtgga
      541 acacgtttta gccacccaaa ccttaaaaca ggcccgtgca aaaagtatga aagtggaagt
      601 ccgtggcaaa gtaaacccgg gcattaccgc aaaagatatt gtgcttgcga tcatcggtaa
      661 aacaactatg gctggcggta caggctatgt agtggaattt tgtggcgaag caattcgtga
      721 tctttcaatg gaagggcgaa tgacagtgtg taatatggcg attgagtttg gtgcgaaagc
      781 cggtattgtt gccccggatg aaaccacgtt cgcttacttg aaagaccgcc caaatgcacc
      841 aaaaggtcaa gattgggaag atgccattga atattggaaa accctcaaag ccgatgaggg
      901 tgcagtttac gatgcggaag tgatcttaga agcaaaagac attgctccac aagtgacttg
      961 gggaaccaac ccggggcagg tgatcggtat tgatgatgta attccaaatc cggaagatat
     1021 ggccgatcct gttactcgtg cctctgcgga aaaagcctta gcttacatcg gcttagaagc
     1081 ccatacagat atgaaagatg taccggttga tcaagtcttt attggttctt gtactaatgc
     1141 tcgtattgaa gatttgcgtg ctgcggcagc agtaatgaaa gggcgtaaaa aagccgacaa
     1201 tgtaaaacgt attctcgttg tgccaggttc aggtttggta aaagagcaag cagaaaaaga
     1261 gggcttggat aaaatcttca ttgaagccgg tgcagaatgg cgtaacccgg gttgctcaat
     1321 gtgtttggga atgaacgatg accgcttggg cgaatgggaa cgttgtgcct ctacgtctaa
     1381 ccgtaacttt gagggcagac aaggacgtaa cggtcgtacc cacttagtca gcccggcaat
     1441 ggcggctgcg gcggcggtgt tcggtaaatt tatggatatt cgcaaagtgt cattaaacgc
     1501 ataataggag gaaaaaatgg caggtattaa acaacattca ggcttggtcg ttcctcttga
     1561 tgcagcgaac gtagacaccg atgcaatcat tccaaaacaa tttttgcaag ccattactcg
     1621 agtcggcttt ggtaagcacc ttttccacga atggcgttat ttagatgcgg aagagactca
     1681 aatcaacccc gatttcgtac tgaacttccc acaatatcaa ggtgcaacca ttttactcgc
     1741 ccgtaaaaat ttaggctgtg gctcttctcg tgagcacgcc ccttgggcat tggcagatta
     1801 cggttttaaa gtaatgatcg ccccaagttt tgcggatatt ttctacaata acagcttaaa
     1861 taaccatatg ttgccgatta aattaaccga agaggaagtc gaagagatct tccaatgggt
     1921 gtgggcaaat gaaggaaaac agatccacgt tgatttagaa gcgatgactg tgactgttgg
     1981 cgagaaagtt tatacctttg agttagacga attccgccgc cactgcttat taaacggttt
     2041 ggataatatc ggcttaaccc tacaacacga agctgcgatt gctgcttatg agaaaaacat
     2101 tccggcattt ttacgctaat taaaatacaa aaaaacggct aacatcttta aggcgttagt
     2161 cgttttcttt ttagccattt tctttggcaa ttagccttct cggcactcta accaaggcac
     2221 attatttttg taataagttg aagtaaactc tcgtgccact aactctacaa aactgccttc
     2281 aatcggctga taagaacgat aacgcacttc aaattttgtt gctcttgcat tcaaactgat
     2341 gttggcaaga tggtcgaacg gataaacctt tccgccatca agttgaaaat agataccaaa
     2401 attctcttgc ttacggcttt cagaccaaag tggaaaatag gttgccaaat atgaactgct
     2461 gcctgttgca aaattcttac aataatagct ataacgctta aaatctttcg gattattcaa
     2521 ttccgcttgg ctgatattct gtttcaaata tccaacctgt gcttgttgct tagttgagtt
     2581 tgattgtggt gagggcgtac aagcaaataa gccaattgcc actgttgcca ttaaagcaat
     2641 tttgaattta ttcataaaaa tcccgataaa atattaaatt aaatctgata tttgctttta
     2701 tcgccaatat caaaatgcag cggcattcgc catttttgaa tactcagcac aagaagcaac
     2761 aagccacaga caaggcttaa aatttgcacc aataaagacc attctagtgc aaaagcaatc
     2821 cacaataccg ccactaaaag cggttggaaa tttaagccga atactctaaa acagaaatat
     2881 tctttatagc ttaatccgcc gatcaccagt agcattgccc cgaacgcaag caaagggaaa
     2941 ttaaacacag caccaagtaa gccaatccaa acagaaaatt ggaaaatcag gcgaaacgat
     3001 ttggcataaa gatgcaaaga agatgccaac attgtgccag atactaataa accatattgt
     3061 gccgtttgcg gataataagg caataaaagc aacatcaatg tagctaacac aaaaccgctg
     3121 cggtaaatga tgacggttaa ataatcccaa aaatccattg gcgattgaat atgtggatct
     3181 gccataactg cctccttaaa caataaatta gccaataaac gcaagggctt gttccactac
     3241 ttctacaccg gctcccgact tagtggcatt ttcacttaaa tgacgacgcc actgcctcgc
     3301 tcctttgcaa tgttgaaacg caccaagcat atggcgaacg atatgattta aatagacacc
     3361 tttggcaagc tcacgttcaa tataagggaa catcttttcc accgcttctt ttgccgttac
     3421 aagcggtcga ttttcattaa aaatttgcga atcgatctcg cctagcattg acgggttttg
     3481 ataggcctca cgccctacca ttaccccatc aacaaactgc aaatgctgtt taatttcctc
     3541 aatggtttta atgccgccat tgatgctaat ctttaaatgc ggaaaatctc gcttgagctg
     3601 ataaacccga tcataatcta aaggcggaat ttcacggttt tccttcgggc ttaaccctgt
     3661 cagccacgcc ttgcgggcgt gtacgataaa atcattgcta taaggttgca ctttttcgat
     3721 aaaatcacac aaaaattcat agctgtctaa atcatcaatc ccaatacgat gtttaaccgt
     3781 gaccggaatt tccaccgcat cttgcattgc tttaatacaa tccgccacta aatctgcttt
     3841 tgccatcaaa caagccccaa acataccgtt ttgcactcgg tctgacgggc aaccgacatt
     3901 tagattaatc tcggcatagc ctcgctctgc caccaatttg gcacaatgag ccaactgtgc
     3961 cgggtcgctt ccacccagtt gcaaagccac cggattctcg ctcggatcat attccaacaa
     4021 atcatatttg gcgtgaataa tcgccggggc ggtgatcatt tcggtataaa gcaaggcttg
     4081 acgactaaat tggcgatgaa aatagcggca gtgacgggtt gtccaatcta acattggagc
     4141 aaccgaaaaa cgtccacggt aaaaaggttg aatttcgtta gtcataaaaa tatcaaaata
     4201 aagcggtaaa aaatcagtaa aaaataaccg cttgtaagcg attcaaaaca agcagccatc
     4261 atactcgaaa aagccagata aacatagttt cctcaaggct tccccatcta tctgcgcact
     4321 tttaaaacaa ccttaaaaca caatatatag tgtttcaaca tcaaatcaca cacaacatat
     4381 tgaagcaaaa atttacaaaa ttatttttct ttataaatca ataagctacc aaagaccaat
     4441 aaaaaagagt gtttgtcaag acttgtcttg aaactttttt tgcatacaat catctaccag
     4501 ttccaaacat aaactttaag atagagccta cgaatatgtc tagaaacctc ttccaaaaac
     4561 gcttaaatat taagccgtat gagtatcctg agcttcttga atttaaagat gcaattcgcc
     4621 attcttactg gttacacacc gaatttaact tcaccggcga tattcaagac tatcgcacca
     4681 ccattaacga tcacgaacgt cacgtgttaa cccgagcaat gcttgcgatt tcacaagtag
     4741 aagtgaatgt aaaacgtttc tggggcgagc tatactgcta tttcccaaaa ccggagatgg
     4801 acgatgtagg cggtactttt gctgaaagtg aagttcgcca taaagatgct tactcgttcc
     4861 tattggaaaa attaggccta aatgaaatgt tcagtcaaat tcatgaaatt gaaccattaa
     4921 tgaaccgcat tcgttatatg gaaagtttta tgaaagataa agatgctggc aaaggcgaat
     4981 ttgttttatc gttagtgctg ttctctttat ttgttgagca tatttcattg tttggacagt
     5041 ttattatcat gatgtcgttc aacaagcata aaaacctgtt taaagggatt tccaatgcgg
     5101 ttgaagccac ctcaaaagag gaagaaattc acggtaaatt cggaattgcg ttatacgaaa
     5161 ttttacgtga cgaacacagt gaactattca caccagaatt ttttgaagat ttgcaaacct
     5221 tggcaaatca agcgtttgaa gcagaacgtg gcatcttaga ctggattttc gaagaaggtg
     5281 atttaagctt tatcaccaaa gcgacggtag aaaattacat taaaaaccgt tacaacaatt
     5341 ctttaagcat tttagggtta gagccgccac acgacatcga ccctgaatta ttaaaagaga
     5401 ctgagtggtt tgatattgaa attctttcaa ccaaagaaac cgatttcttt aacaaacgta
     5461 gcaccgatta ttctaaaaaa atgaaacaga ttaccgcaga tgacttattt taatacagac
     5521 cgcccggact tccactggct taatgaagac agccgtttat tcttacaacg tggctattta
     5581 ttggaaggaa caaccgcatt agaccgcatt cgttttattg ccgaacacgc agagcgaaaa
     5641 ctcggcattg aaggctatgc cgataaattc tatcactata tggcaagagg ctacttctcg
     5701 ctttcttcgc caatttggtc aaactttggc ttagatcgtg gcttaccgat ttcttgtttc
     5761 ggtagctaca tcggcgactc tatccatgaa attatggtga ctaccgctga agtgggcatg
     5821 atgagtaaaa ttggcggtgg tacttcggcc tactttggcg atattcgtcc gcgtggctcg
     5881 ttaattaaaa acaacggtaa atcagacggc tcatttaact tcagtaaatt atttgacact
     5941 gtgattgacg tgatttcaca aggaacatca cgcaaaggtc agtttgccgg ttatattgat
     6001 attgagcacg gcgatattga cgaatggctg gatattcaca ccgaaggcaa cccaattcaa
     6061 ttaatgtatt acggtgtgtg tgtcggtcac gattggttag agtcaatgaa agccggcgat
     6121 ccatacaaac gtcagctttg ggcaaaattg ttacaacgta aaaccgaaac cggtatccct
     6181 tatttattct ttaaagacaa tgccaacgca ggtcgtcctg atgtatataa agataaaaat
     6241 atgacgattc acgcctctaa cttatgtact gaaattatgt tgccttccag caacgaagaa
     6301 agtttcgtat gctgtttatc gtctatgaac ctactctact ttgatgagtg gaaagatacc
     6361 gatgcaccag aaacattaac ctatttcctc gatgttgtaa tgagtgaatt tattgagaaa
     6421 agtcaatcaa ttccattctt agaccgtgca aaccgctttg cccgtcgcca tcgtgcatta
     6481 ggtttaggcg tgttgggctg gcacagctat ctacaggcaa ataatattgc ctttgacagc
     6541 ttccaagcga tgcaaaaaaa caacgagatt ttcaaaacgc ttcaagcaaa aaccttgaaa
     6601 gcctcgcaag aattggctca acgcttcggc gagccggaaa ttttagaggg ctatggtcgc
     6661 cgtaatacta cattaatgag tattgctccg actaaatcca gtagctttat tttaggcagt
     6721 gtgtcgccat cggtagagcc gtttaaatcc aactactatg taaaagattt agcgaagatc
     6781 aaaaccgtgt ataaaaaccc gttcttagag aaattactcc aagaaaaagg gctagacacc
     6841 gaagaaattt ggacgtctat tttacaaaat gatggctcgg ttcagcattt ggaacagctt
     6901 tccgagcacg aaaaagaagt atttaaaacc tttgccgaaa tcagccaatt aagcgtgatt
     6961 cagcaagctg ctcaacgtca aaaatatatt gaccaagggc aaagtattaa tgtgatgatc
     7021 cacccagcca caccggctcg tgatcttaac caattatact taacagcaga agagctgggc
     7081 ttaaaatcca tctactacca aaactcaatg agtgcagcac aggtatttaa ccgtaaccta
     7141 ttaagctgct caagttgcga agggtaaata atgggaaatt tatcgcatac ttcacctaat
     7201 actattgttg aagttgttgg tgaatttcct gaaataacat ctagtgggta tacctttgat
     7261 aaaggtccta ttcaattaag aatcggcaaa catactgctc caaataaagg ctttggtgta
     7321 aagcatattg aagccgagca tatgcaagaa attcttaatc taggatttac atcagttaat
     7381 gaatttgtca aagctatcat agtagaaaac gctaaaattt tttgcgaatt ctcagattta
     7441 aaaggcaatc atcgccctat tattctgaaa gcaagtattg gcattgtggt tctagagcgt
     7501 aagtttttgg aaagcggtac gatatattca gttgtaaccg cttatagaag aacaaatcct
     7561 cacggaatac aaataggcac tatgaaataa agtacgttag tgttataatc agttccacgc
     7621 aagagcattt gtagaaaata acaggcggat ttggttttct actgtgggcg gcaggtttcc
     7681 gctaacctgt aatagctatt taatttttat attaaatcct gaacttgaaa cagactaagg
     7741 gattgctgcg gtagctaaga atacaaacct ctctataatc atatagagag gttttttctt
     7801 attgatgagc acaagttaag ataattattt actctcccga cataacttca aggtagcttg
     7861 aatcagctca aaagctattg tgccttgttg tgggatttca ggtaagcttt cctcacagtc
     7921 gaaccatttt gcatcgcaga tttcttcttc ctgtagctga atttcaccgc tttcataatc
     7981 cgctaaaaaa cctagcatta atgaattggg aaacgcccaa ggttggcttc caaaataacg
     8041 cacatttttc actttaatgc ccgtttcttc aaacacttca cgatgcaccg cagtttctac
     8101 cgcctcaccg gcttcgacaa aaccggctaa agtggtataa attgtgcctt tatggcgtag
     8161 atgattggct agtaggattt gtctgccttt tcgcaccgcc acaataattg acgggctaat
     8221 cgttgggtaa gctcgattgc cacacgcatt gcagtaaatt gcaatttcat cgcttgccag
     8281 tatggttttc tcgccacatt ttccgcaaaa ttggtgagtc tgaaagaaat ggttaagcga
     8341 aacagctcga tgcaacaaat gagacagttc gggtggtcgg ttaatttggc ttcttaaata
     8401 agcaaactct cgctgattat ccgattctaa cgccttcacc aaataagccg gcgagccttg
     8461 atattgcccg atggttaatt tctcacgtcc acttaagccc agctcttccg cacttccgaa
     8521 tggaatttcc ccagcctcca aggcaatatc aaaatcgctg acgataatcc aatatccttt
     8581 attcatcttt caatcctaat tgtgtaaaca acttacgttt ttcattttca gatagcactt
     8641 gaaactcacc acagcctaaa ttgcctaatc taaactggcc tatcccaaca cgaattaacc
     8701 gtaaagtcgg gaaaccgata tgtgcagtca ttcttctgac ttggcgattt ttcccttcag
     8761 aaataatcaa ttctatccag ctggtcggaa tggttttccg ctcacgaatt tgcggggcga
     8821 tattccaagc aaaatcgggc gttgctattg ctctgacttt cgcgggcttg gtcaaaccat
     8881 cttttaactc cacccctttt gctaatttgg caagatcttc cggttgtgga acaccctcca
     8941 cttgtaccca ataggttttc tgcttgtcaa atttcgggtg agctaaacgg tgctggattt
     9001 cgccattatt agtcaaaagc aacaatcctt cactgtctct atctagccgc ccgaccgggt
     9061 aaatattggg catcgtaata aaatctttta gcgtttttcg cccctgttca tcggtaaatt
     9121 gggttagtac atcataaggc ttattgagta acacaagggt ggtttccgca aaggtaagcg
     9181 gtcgtttttg cggatttttt tgcaaatttt tagcgaaatt tgaccgcttg tttgtcattc
     9241 ttttaaaggt tggttgtttc attttttcag gttcgcccac gcaacagaaa gtaaaataat
     9301 taagccaccg ataatcattt taagggttgg cacttcatta aagcaaagcc acgcgatcac
     9361 aatcgcatac accggctcga gggaaataat cattgaggca gtacgggcgt tgatggtatc
     9421 aaggcttgaa ataaacagcg tataggcaag ggttgtacat aaaaaaccga tacagaaaat
     9481 ccaaaaccaa tcttgggtgg aaacgcttgg aaattcagtg atggagagag gcaacagaaa
     9541 aagtgtagca aaaatatact gccaccagct tgcttgcaca ccggaaattt tgctcatggt
     9601 acggcgattc gctaccgcca aaataccata caccaaagca gataacacgc cccacaataa
     9661 accttgagtg gcttgattac caaaagtaaa ttcaggggta actaaaatta aaccaaccgt
     9721 gatggcaatt aatagcacca cttcacgaaa gcgtaatttt tcacggaaga acaggctttc
     9781 aaataacgcc acaaatgccg gaaagctggc aaagcctaag gttgctaccg ccacaccacc
     9841 tactttaacc gccacaaaaa aagtaaccca gtgggcagct aataaagctg cagaaaatgc
     9901 aagttgagcc atttgctgta agttgagctt tacaagcggt tgttttttcc ataaaaaata
     9961 caaagagatg atagcaaaag caatcatcac tcgcccaagc acaatggttt cagccgagct
    10021 ttgaattaat gctccgaaga tccccgaggc accaaataaa accgctgtgc cgtgtacttt
    10081 aagtagtgca agtgttcttt tctccactat ttgatcctat tatgttgatc ttgctcgtcc
    10141 ggcttgcgtt caaattctgc atcaaacgtg ttgctatctt gcgcagatgt aacagaaaaa
    10201 gacgaagttt gggcggtaaa atgcataaac accttattct ttacgctatt aattacgaag
    10261 gcttgaatcc attttcggct aaagggtaac acgcataaaa tcgctaaaat atcacttaaa
    10321 aagccgggaa taatcagcaa aatgccggct acaataaaca tcaccgagtt gccgactgct
    10381 tcagtcggta tcttgccttg gcttaaatct tgcttgatgg aaaagagggt ataaacgccc
    10441 cttaacttca caatccataa ccctaaaaat gaaatcacga ccagtaacaa aatcgtgggt
    10501 aacacgccaa tgatcgagcc aatattcacc agcagcgaaa tttcgcaata gatataaaag
    10561 aaaataccaa acagaatcgc taaaataggc atattatcct cccaacgttg cggcagcgtt
    10621 tgccgtcaga ttttctgccc cattggctcg catgacaata ttgtcttcgg tacgaatccc
    10681 gccaaaggct ttgaaagcct caattttctg ccagttaaag gcagaagata aggcactgtt
    10741 tttccaaggc ttaagtagca tctcaataaa ataaaaaccc ggctcaatgg taagcaccat
    10801 attttcctgt agctcacggg tacaacgcaa acttgggtaa acctctggag gagctttatg
    10861 gctgcctcgg gcattttgct gaaaaccgcc cacatcgtgc acttgaatac ccaataaatg
    10921 ccctagtccg tgtgggaaga acgtacggct aatcccttgt tcaaaaattt gctcggctga
    10981 aagatgaata aattgatgtt ccgctaataa ttgcgaaatc atctgctgca ttcgggtgtg
    11041 ataatgcagg tagttcaccc caatactcag ctcagcaata atctgcaact tcaactgttc
    11101 cattttcgcc accagctcgg caaattcaga accgctgtca aaggcatagg tgcgggtgag
    11161 atcggaggca taaccattta ccgttgtgcc ggcatcaatt aaaaaactgt ggcgttttgc
    11221 gtgggtgtca aaatctaacg ccgtataatg tagcaccgca ccattttgat taatcgccac
    11281 aatattgcca taaggaacat tgagatcaga ttgctgcgtc gctttcaaat attcaaggtt
    11341 gatttcaaat tcgcttttgc cggcaaaaaa tgcctctttt gctacttgat gcccttttaa
    11401 ggctgaaaat tgggcttggt aaatactttc aatttcaaac tccgttttga tggagcgggc
    11461 aaaattcagg ctattcagca ctttctgcgg attaatatgg ctaaagccta actttttggc
    11521 tagctcaaca tcttcaccga taaaggcaca agcggtcgga ttttggataa aggttgcaat
    11581 ttcattctct gctctcaaca aaacccactc aaattccgca gcgaaaaagg cctccgttgg
    11641 cacttttaga gtggaaaccc aataatcttc aggggcataa aaatagattt tcggcttatt
    11701 tttgccatct aaaaataacc agcaattttc agcttgggga tatgggaaaa agtaattaaa
    11761 ataagggtta attttaaacg gggcggtttg atcgtctaaa aataaggttt ttgccttgcc
    11821 ggcataaatc cataaaccgt ctaaaaaggc attttccagc aagctttgca ctgtctgttg
    11881 caaacgtgcg agatgcgtag agaatagatt tttcataagg aataaaatga ctcaattaac
    11941 tgtaaataaa gaattagata ccttggggct acgttgccca gagccggtga tgctcacccg
    12001 taaaacaatc cgtaatatgg aagagggaga aattttgcat atcatcgccg atgacccggc
    12061 cactacccgt gatattccga gtttctgcga atttatggat caccaattaa ttcaaaaaga
    12121 ggtggactcc accccatacc attactggat taaaaaaggc ttggaataaa ccacaagcgg
    12181 tcgattttag ccataaaatt gcaaatttat gcacaaaatc gaccgcttgt tttaattaat
    12241 gacggcgagg ttcgtcctca aaatcgtcat tttcatcatc gaaaaattca ccgtcatcgc
    12301 cgtactcatc ttcatcagca ttcggatctt caaagtaggt tccccagccc tcatactccg
    12361 caccggcttt ttcaattaat ggcagtaact ctttttgttg tgcggtaatg agatccgcat
    12421 tcaagtgaat ttcgctcaca atgtcgcata caaaaatcac tttaccattt tcgtcttcca
    12481 cttcttccgc ttcggaaatt tcatagccca gcttataggc atcaactact aatttttcca
    12541 atttatcaaa atcgtggtga gcaacgtggt gttcaataat ataaagggct tcagggtctg
    12601 aaccatcggc taataatgat gaaatggttt catcggtttc tgtgcgtaat tcatcgagat
    12661 tgtacatatt gaattcctta cttattctgt gattaatttt ggtgcaaacc agctatctaa
    12721 tttgttcgac agcttatcaa taccgatttt attcagtgcg gaataagcct ctacttggat
    12781 atcaccttgg aatggtaaaa tcgcttctct taccattttt acctgcttag agcgtgccga
    12841 ttggcttaac ttatccgctt tggtcaacag cagtaacacc ggcaagttgg ctgacactgc
    12901 ccattcaatc atctgttgat ctaaatcttt caacgggtgg cgaatatcca ttaaaatcac
    12961 cacaccgcct aaacattcac gcttttgtaa atactcgcct aatgcttttt gccactggat
    13021 tttcatctgt tcaggtactg ctgcatagcc atagccaggt aaatccacta atttacaatt
    13081 cgtttcaacc ttaaacaagt taatcaactg cgttcgcccc ggtgttttgg aagttcgggc
    13141 taaacttttt tggttagtta aagcgttcaa agcagtcgat ttaccggcat ttgaacgccc
    13201 ggcaaaagca atctccacac ctgtatcttc aggtaaatga cgaatatccg gtgctgaagt
    13261 taaaaaatgg gttttatgat agtttaattt cattttattc tctaaattta aaagataagc
    13321 cttgctcgcc atattgattc ggttcaggat taccggcaaa tacaccccat tctaaaaaga
    13381 gcaacattcc aataaatgcc ggcatcacct gtccaagcaa tatctgcata attccttgtg
    13441 aataaggagc tgcaagataa caaataatcg gcactaatgc cattaacagg gcttttgccg
    13501 aacgatttcg gtcgtgtaat cgtttaataa taatagcaga caggctaaat cctgtaatta
    13561 taagcggtag cacactcaat aaagacaatt cagccaaatt tatccacata gcaaccataa
    13621 acaggaaaag aaagtggatt ccaaatccaa tccaaaaacc tcgtctattt agcctaccgt
    13681 taaaactaaa aagtgcttta taccaactca ttttctaccc taaagctaca tcaagtacca
    13741 tcattactac aaagcctaac atcaggctta aagtcgcaat atcagtattt cccgaacttt
    13801 gcgattccgg aatcagttct tctacgacca caaaaatcat cgctccggca gcaaaggcaa
    13861 gagcataagg taaaatagcc gtcatcgaca gcacaaaaac cgccccaatc accgccgcaa
    13921 taggctcaac cactgctgac atagagccat accaaaatgc tttcttccga ctatgccctt
    13981 cgcctcgaat tggcaataca agtgacgagc cttcgggaat gttttgtaac cctattccga
    14041 ttgccaaacc gatagctccc ataatggaag catctacgcc tgaaacttgg gttgccaaag
    14101 caccgaaagc cacccctatg gctaatcctt ctggaatatt atgaatggta atcgcaagaa
    14161 aaagcaaagt agattttgat aagccttgtt taagttgatc atttccttca gcttgctcaa
    14221 tcggcttact caagtgcaaa tgcggcacaa catagtcaat taatcgaata aaagctccac
    14281 cggcaagaaa gccaatcgct gcaggcagcc aagctaaaga gccataatcc gcctcggcat
    14341 attctaaaga aggtgcaagc aaagaccaaa acgaggctgc aatcattaca cctgcggcaa
    14401 agcccatcat actgtctaat aattttcgat taaccgattt aaaaaaatag acaaatgacg
    14461 aaccgaaaat cgtacaaccc caagtaaata aacccgctaa aaaagcttgc catattggag
    14521 aaagtgaaag gaaatattca aacaagaaat agtaccagct aaaataaata ttggctcatt
    14581 ctatcaaaga ttcagggtta ttaatatagt gtagccaaag gctcaacgaa gatttcactt
    14641 gtaaaactta gcaagaaaat aaccgcttgc atttcccttt cataaataca atgaaaatcc
    14701 taacaagcgg tcattttccg tgagtttttt acctttacca caacaacaaa aaaccgcctg
    14761 tatctctaca ggcggctctt tcttggatta cttgtacttt gtttatttgt acttattttg
    14821 cttttgctta agttttcgct tttgtaactt ttagctttcg cttaagctcg cttaaattaa
    14881 aacccgacga tgctctactc tcacatggcg aatcaccaca ctaccatcga cgttactgcg
    14941 ttttacttct gagttcggta tggggtcagg taggaccaca gcactcttgt cgtcgggaaa
    15001 attcttttct atttttgaat ttctttaagt taacttccta atctaactct tagttcactt
    15061 taatagttag attaacttcc ttaacttcga ttgatttctt ctctagtttc gttcttcttc
    15121 tcaatacaaa aacaagccta aaaacatttg agcgttgtat agttaagcct ctcgggcaat
    15181 tagtactggt tagctcaatg tctcacaaca cttacacacc cagcctatct acgtcgtagt
    15241 ctccaacaac ccttacacac ttatagtgtg ggagaactca tctcgaggca agtttcgtgc
    15301 ttagatgctt tcagcactta tctcttccgc atgtagctac ccagcaatgc ctctggcgag
    15361 acaactggaa caccagtgat gcgtccactc cggtcctctc gtactaggag cagcccctct
    15421 caattctcca acgcccacgg cagataggga ccgaactgtc tcacgacgtt ctaaacccag
    15481 ctcgcgtacc actttaaatg gcgaacagcc atacccttgg gacctacttc agccccagga
    15541 tgtgatgagc cgacatcgag gtgccaaaca ccgccgtcga tatgaactct tgggcggtat
    15601 cagcctgtta tccccggagt accttttatc cgttgagcga tggcccttcc attcagaacc
    15661 accggatcac tatgacctgc tttcgcacct gctcgacttg tctgtctcgc agttaagctt
    15721 gcttatacca ttgcactaac ctcacgatgt ccgaccgtga ttagcaaacc ttcgtgctcc
    15781 tccgttactc tttgggagga gaccgcccca gtcaaactac ccaccagaca ctgtccgaga
    15841 ccgcgttccg caatcttcgt tagaacatca aacgttaaag ggtggtattt caaggacgcc
    15901 tccacaatca ctggcgtgac tgcttcaaag gctcccacct atcctacaca tcaaaattca
    15961 atgttcagtg tcaagctata gtaaaggttc acggggtctt tccgtctagc cgcgggtaca
    16021 ccgcatcttc acggcgattt caatttcact gagtctcggg tggagacagc ctggccatca
    16081 ttatgccatt cgtgcaggtc ggaacttacc cgacaaggaa tttcgctacc ttaggaccgt
    16141 tatagttacg gccgccgttt actggggctt cgatcaggag cttctcttgc gataacacca
    16201 tcaattaacc ttccagcacc gggcaggcat c
//
LOCUS       DANLXK010000054        16138 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.054, whole genome shotgun sequence.
ACCESSION   DANLXK010000054 DANLXK010000000
VERSION     DANLXK010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16138
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..313
                     /locus_tag="PXD88_001402"
     CDS             <1..313
                     /locus_tag="PXD88_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280978.1"
                     /translation="FAFMTLSNVAYPNLDEWYSASDKERREFIAKHFAEETVRSDRNT
                     PYDYAMCTGRMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQNCAKYI
                     Q"
     gene            complement(349..1101)
                     /locus_tag="PXD88_001403"
     CDS             complement(349..1101)
                     /locus_tag="PXD88_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL6280979.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(1140..2387)
                     /gene="clpX"
                     /locus_tag="PXD88_001404"
     CDS             complement(1140..2387)
                     /gene="clpX"
                     /locus_tag="PXD88_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL6280980.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(2387..2980)
                     /gene="clpP"
                     /locus_tag="PXD88_001405"
     CDS             complement(2387..2980)
                     /gene="clpP"
                     /locus_tag="PXD88_001405"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL6280981.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            3092..3475
                     /locus_tag="PXD88_001406"
     CDS             3092..3475
                     /locus_tag="PXD88_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL6280982.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(3579..3655)
                     /locus_tag="PXD88_001407"
     tRNA            complement(3579..3655)
                     /locus_tag="PXD88_001407"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3619..3621),aa:Asp,seq:gtc)
     gene            complement(3744..4499)
                     /locus_tag="PXD88_001408"
     CDS             complement(3744..4499)
                     /locus_tag="PXD88_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6280983.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(4559..5554)
                     /gene="trpD"
                     /locus_tag="PXD88_001409"
     CDS             complement(4559..5554)
                     /gene="trpD"
                     /locus_tag="PXD88_001409"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL6280984.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(5572..5958)
                     /locus_tag="PXD88_001410"
     CDS             complement(5572..5958)
                     /locus_tag="PXD88_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL6280985.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(5951..6541)
                     /locus_tag="PXD88_001411"
     CDS             complement(5951..6541)
                     /locus_tag="PXD88_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL6280986.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(6551..8107)
                     /gene="trpE"
                     /locus_tag="PXD88_001412"
     CDS             complement(6551..8107)
                     /gene="trpE"
                     /locus_tag="PXD88_001412"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL6280987.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            8249..8866
                     /locus_tag="PXD88_001413"
     CDS             8249..8866
                     /locus_tag="PXD88_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL6280988.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            9012..10079
                     /gene="rluB"
                     /locus_tag="PXD88_001414"
     CDS             9012..10079
                     /gene="rluB"
                     /locus_tag="PXD88_001414"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL6280989.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            10145..11917
                     /locus_tag="PXD88_001415"
     CDS             10145..11917
                     /locus_tag="PXD88_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL6280990.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVLIPIFFPFNP"
     gene            complement(12007..>16138)
                     /locus_tag="PXD88_001416"
     CDS             complement(12007..>16138)
                     /locus_tag="PXD88_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6280991.1"
                     /translation="VWNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLSTLSLALS
                     AGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKVSTALGYN
                     TTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFIGDHAGLN
                     HSNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKLAGPTTNV
                     TSDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAYGAEANAT
                     AIHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGTNAGATSD
                     YASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESSNASAFNA
                     TAIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATVSIGAEGK
                     ERTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTENGNITFP
                     TYALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERHLGSTVKI
                     KGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGITIANGVA
                     DKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSISDDGIQRA
                     NYDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADGMNATSIG
                     YNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGENSTAVGYE
                     ASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAIALGNSAN
                     AAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKSATLNGNT
                     YTFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEIDGLNTKV
                     NELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANTLTVKLAK
                     DIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDISPISADAV
                     NGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNVGSAITAL
                     NDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNGSLTVKLA
                     KDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAAGTKVTNV
                     KAGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGATATAGLPQAYL
                     PGKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGGSIGMGYQW"
BASE COUNT         4435 a         3289 c         3460 g         4954 t
ORIGIN      
        1 ttttgctttt atgacattaa gtaatgttgc ttatcctaat ttagatgagt ggtactcagc
       61 ttcagataaa gagcgaagag aatttatcgc aaaacatttt gcagaagaaa cagtaagaag
      121 tgatagaaat acaccgtatg attatgctat gtgcactggt agaatgtttg ctaaacaact
      181 gactcgagat gaagtcaaag actacccttt ggcaaacact aagccgcaat atttaacccg
      241 tgatagacgg attgagatta tgtctaattt acctcgtgaa atattacaaa attgtgctaa
      301 atacatacag taattttatg agtaacacca ctttggaatt aagtggtgtt attttaattt
      361 taataatgtc tctaaaatca tctccaacat aaactcaata aagccggtag aatcattttg
      421 gctgtctgcg agagaaagca tttgataata acgttgttga ttttcgtaaa ccattgtttc
      481 aatcggcaac caagcgaaaa gtgggttcca ttgtgctaaa aggacatttt gccataatcg
      541 acccattctg ccgtttccat cactaaaggg gtgaatcatt tctatttcat agtgcataac
      601 cgagctttta atgagtgcag gtgtatcatc ttgtttagcc caagagaaca actcattaat
      661 caaattctct acgaattgag gacgagcccc catatgcaca agttgcccac tgaaattata
      721 aatgccgaca tcttttgaac gaaaagcccc tgcgtcattt actaagtcag cagtaagaaa
      781 cttatgtgct ttgagaaaat ctttaatcga gtaaggatta tagtgcatca tttcatcgta
      841 agcgtcatag gcatttttga cttcacgaat atctttgggg tgtccgagaa cctttttgcc
      901 cttaatgatt gcggtaactt gctcaatcgt taatgaattt gcctcaatag ctaaagaggc
      961 ttgaattgat ctcaagcggt tattttttct aagatgtaaa ttacgctcaa aatccaattg
     1021 tagcgttccc aatttatgag aaatttctac aaccagattc agcattttag tggtaactgt
     1081 aaaaggtggt ttataagcca ttttgcaata atcctaaaaa attaaaccgc ttgtcattgt
     1141 tactccacct tcggcttatc gccgttttca acacagcctt tgccgatggt gacttttttc
     1201 gcattgaggg ttgggagatc gtacattgtg tcaagtaata agttctcgac aatagaacgt
     1261 aacccacgag ccccggtttt gcggctaatc gctttttggg caattgaaat taatgcatct
     1321 ttggtgaagt gcaattcaac gccttccatt tcgaataagg cttgatattg cttgatgatc
     1381 gcatttttcg gctcggttaa gatttgaatc agagcttctt cgtccaattc ttgcagcgga
     1441 gtcaccaccg gtaaacgccc gattaattca ggaattaagc cgaatttgac taaatcttcc
     1501 ggttcaactt gtttgaatag ctcggttaaa tcttggcgat ctttatcttt tttcaatgcc
     1561 gctgcaaaac cgataccacc ttgagtgttg gtacgggctt ccacgatttt atctaaaccg
     1621 gcaaaagcac cgccgcaaat aaagagaatt ttggaggtgt ccaccggaat ggtttcgcct
     1681 ttcgggtgtt tgcgaccgcc ttgtgggtta atgttcgcca ccgtgccttc aagtagtttt
     1741 aataaggctt gttgaacacc ttcgcccgat acatcacggg taatggatgc actttccgat
     1801 ttacgggtga ttttgtcgat ttcatcaata aaaacaatgc ctcgttccgc ttgttcggct
     1861 tcaaaatcgc atttcattaa taatttttga atcacgtttt cgacatcttc tcccacatag
     1921 cctgcttggg taagggtagt agcatcagct accgcaaaag gtacgtttaa acggcgggca
     1981 agggtttctg ccaacaaggt tttaccgcta ccggtcggcc cgattaataa aatattactt
     2041 ttacctaact ctacgccatt agtggcttga tggtttgaca atgcacttct taagcgtttg
     2101 tagtggttat aaacggccac cgaaagcact tttttcgcgt gttcttgacc gatgacataa
     2161 tcatctaaat gagcgtgtaa ttcgtgaggt gtcggcacat tggtgaaaaa actgccttca
     2221 tcgtcttggt tttcatcaat taacggctct tcttcaccgt gtaataaggc gtaggattcc
     2281 tcgatacatt cattacaaat atagccttcc gtgccttcga ctaattgatc gacttcggta
     2341 cgttttttac cgcaaaaact acagtggggt tctttttcaa atgccattac gccacctcac
     2401 tgcgagaagt taatactttg tcgattaagc catactcagc ggcttcttcc gcagacataa
     2461 aattatcacg ctcggtatcg gctaacactt tttcatagct ctgaccgctg tgttctgcca
     2521 tacggcgggt aagggtagct ttcaagcgta aaatttcttc cgcttgaatt tgaatatcgg
     2581 ttgcttgacc tctcgctcca cctaaaggtt ggtgaatcat aatacgagcg tgcggcagag
     2641 caaagcgttt accttttgcc ccggctgaaa gcaaaaatgc ccccattgaa gccgcttgcc
     2701 ctgtgcaaag ggttgctaca tcgggtttga tgaagttcat tgtatcgtaa attgccaagc
     2761 ctgctgttac cacgccaccc ggtgagttaa tgtataaata gatgtctttt tccggatctt
     2821 cggcttctaa aaacagaagt tgtgccacaa tcaggtttgc catattgtct tccacctgac
     2881 cgtttaaaaa aataatacgt tcttttaata aacgtgaata aatgtcgtaa gaacgttcgc
     2941 cttttgaggt ctgttccacc accattggga ctaatgccat tttgttttcc tctgtcgtaa
     3001 tacaaaatct cgctattcta gcaaattttc agaaaatcat taacaacaag cggtcagatt
     3061 gttaaaatct tttgcaaatg atgaggaaat tatgacatta acagaaattt accaaaaatt
     3121 tgaacgttgt aaatcgtggg aagaaagata ccgcttgtta attcagctaa gtcgcttgtt
     3181 accaaaacca agtgagcaag agttggcaca aatagcggaa attgagggct gtgaaagccg
     3241 tttatggttt gaatttcaag ctgagccacg aaaagtagtg gcatatagcg atgcccgttt
     3301 aatgcagggg attttattta ttgtgagtgt agctttaact gaaaaaacgg cagaagagct
     3361 gaaaggcttt gacttaaaaa cgatgtttga tgagctaaaa atttcacaaa atttaaccag
     3421 cacaaggtta aatgggttgg gtcagttaca gaaacatata atgatgaatt tgtaattcac
     3481 cctcgcccct tgtgggagag ggtgaataaa atccgcagga ttttattcgg gagaggggaa
     3541 tataaaaaac ctctgatttc tcagaggctt aaatttgttg gcggaacgga cgggactcga
     3601 acccgcgacc ccctgcgtga caggcaggta ttctaaccag ctgaactacc gctccatact
     3661 ggtgctaaaa taatagtggt ttcctcaaca ttgagcaaat agtttttgca aaatagtgtt
     3721 taattggttg taaaataacc actttatttc tgcttgatcg ccttgataaa cagcaacggc
     3781 ggacggtgct gtaaatcttt aaattcattg tgccaccgag gttggcctgc cagcattggt
     3841 tcttccattt gcacaatctc aaacccgcct tgaataaggt tattcacaat ggttgccatt
     3901 gtgcggtggt aggttttaaa gggttgttga aaccaacttc tgtcccgttc gccctcttcc
     3961 cgataatagt tcaagcggta agcaacttgt tgtttttctt ggtttttctc ccaacgatag
     4021 ccttctcggt aacaggtgac aatcgggtgt tcttgcgaga aaatcagcgt gccacaagca
     4081 gtcatttttt gcgaaatttt tgcaagtagt tcggaaaaat cagcaatata atgaaacgca
     4141 aaagagctgg ttactacatc gaaatcgccc tcgctgatct catttaatcg ctccatcggc
     4201 aggcagtaaa gggaaaaatc gttgcctttt tgccaatgag cagaaagatc gctttctgcc
     4261 tgttgtagca ttaattcaga taaatccaac cccaccactt tttctgcacc gagcgttaaa
     4321 taatgggcta aatgaactcc tgtgccacaa cctaaatcca gcactttttt gccggttaag
     4381 tctggcagta gagagaacat tgttggcttt tccaccactt cattcatact tattggattt
     4441 tgtcgaagtt gttggtaacg ctcaaagaaa atcggagtgt cgtaaatgct ttttttcact
     4501 taatagcctt taaacaaata taaaataagg cgggttaaaa cccgccacta cgatatgatt
     4561 agtaagtcga taattttcgc aaagtttcta acgcttttcc actctcaagc gtttctttta
     4621 ctttttgcac attggctttt aaatcatctt ctccaaaggt tttcattaat aatgcgacat
     4681 ttgctgccac cgcatcaata tgagccagtt taccttttcc ttgtaaaata gcggttactt
     4741 tttcggcatt ttctgcaggt tcaccgcctt tgagatcttc taacgaatgg cgttcaatgc
     4801 cgaaatcttc cggcgttaag gtgtaatagt cgatctgtcc gttttgaatt tccgcaacct
     4861 gcgtttcgcc gtgaacggca acttcatcta aacctgcacc gtataccaca atagtgtgtt
     4921 cgtaacctaa ggcttttacg gtttcagcat agactttcac taactcaggg gagtacacac
     4981 cgagtaattg gcgtttagcg tgagccgggt ttaccaacgg ccctaaaata ttgaaaatcg
     5041 tgcgggtttt taaggcttgg cgaacagggg cggcatattt gaatccgctg tggtaggttg
     5101 gggcaaacaa aaagcagatg ttggtttcat ctaaagcaag gcgtgccgtt tcaggtgaaa
     5161 cgtcaacatt aatacctaaa tggcttaata catcgcttga gccggtttta cttgatacgc
     5221 tacggttgcc gtgtttggca attttatagc ccattgtggc ggcaacaatc gcacttgtgg
     5281 tagaaatgtt gatggtatta tgcccatcgc cacctgtgcc gacaatatcc gcaaaagggt
     5341 aatcaggcgt tgagaacgga ttggcatttt caagtgcggc ttttgcagca cctgcaattt
     5401 catcaacggt ttcgccacgc agttttagag cgattaaggc agcagcaagt tgttcatttg
     5461 atacattgcc tttaataact tcactaaaaa aacggtgaga ttccgcttgg gctaaggctt
     5521 ggttggcgaa taatttatct aaaagtgctt gcatagtctc ttccttttta attagcgatg
     5581 tgcctgatat tccaaatcgg ttgcctcgtt gccggtcatt ccacgaaagc cccagcaatg
     5641 ctctggctgt tctttaatgg tgatttcaac gtccattggc acaatgccga ctttggtgtg
     5701 taaggcacta aatagtcctt taattaagcg ttttttgagc tgttcgctcc gcccttgcat
     5761 caggtttatt tcaatcacaa taaaatcttg gctacggtta attgggggat agaaattttc
     5821 cgcatccaat aagtcaaaac gcaaagcgtg gcgttgtttt ggtacgccaa ggctcatttg
     5881 catacagtca aaaatcacgt ctgcaatcag ggctctgcgg tctgctaagg tttgttttaa
     5941 tccatataca ctaatcattt ttttctccta ataaccattc caccgactgc ttaagtaatt
     6001 ttgtgccttg cacggttaaa atggattccg ggtggaactg gaaaccgcaa atcggtaagg
     6061 ttttgtggcg aattgccatc acaatatgtt caaatttcgc attaacgata aattctgccg
     6121 gtaattcatc gcccattaat gagtgataac gagcgacaag cattggattg ttaatgcctg
     6181 aaaacatcgc ttggttatcg tgttcaatac gagaaacttt gccgtgcaat actgtgccgg
     6241 tatgcactac tttgccgcca aaggcctcaa ttagagcttg atgtcctaaa caaatgccaa
     6301 tcatcggtac tttgtctttc agacggcgaa taatttccaa taaattgcct gcctcagccg
     6361 gattacccgg gccgggggaa agggcaacca aacaattttc ggtggtttca gctttggcta
     6421 aaaaatcctc aagcggataa tcattgcgga aaatcgttac ctgatgccct aattcacgaa
     6481 attgatcgac caagttatag gtaaaagagt cgaaattatc aataaaaaga atatttgcca
     6541 tagtttgtcc ttatgctttt gcattcacct gcccaatcgc ttttaacacc gcgcgtgctt
     6601 tatggcgtgt ttcatctgcc tctaattgtg gatcggaatc cagcacctca ccacaaccag
     6661 cttgcacata ggcaatgcca ttttgaacaa aggcggaacg gatcacgata caggtatcta
     6721 aattgccgtc tgaggttaaa tagcccaccg caccgccgta gctatggcgt ttttgttgct
     6781 cgacttggta gatcagttgc attgccttaa ttttcggagc accagttagc gttcccatat
     6841 tcatacaagc ttgataagcg tgcagagcgt caagatcttt tctaagtgtg ccgatcacac
     6901 gagaaactaa gtgcataatt tgcgaatagc ggtcaatttg cattaaatca accacacggc
     6961 gagtgccgga ttcgctcaca cgagccacat cattgcgggc aagatcgact aacattaaat
     7021 gttcggcaag ctctttttgg tctaaacgca gttctaattc caaacgggaa tctaattcag
     7081 gatcgatatt accttgttca tcaaaaccgc gtgggcgaga gccggcaatc gggtaaattt
     7141 ccaactggcg gttggcttgc gaatatttca acgcactttc aggcgacgcc ccaaacagag
     7201 tgaaattttc gccctgcata tagaacatat acgggcttgg attgttgatt ttgagctgtt
     7261 tatagctggc aagagtattc gggcaaggca agctgaaacg gcgagagggc acaatttgga
     7321 acacatcacc gatattaata tggtgtttga gtttgcggat aatcgctttg aaatcttcat
     7381 cttcaatatt ggcggttgcc tcactcgttg cggtttggtt cgctagaggc agctcaatat
     7441 gtgacagatt tgcaagtttt tgcgtaaatt cgaccgcttg ttggttcaaa ttggtttgtt
     7501 cattcggttc aaaacagaag gtgtttagca ccgcagtttc ggtttggtgg tcgattgtaa
     7561 ccagttgctc tgctaaatag aaagtgtaat ctgggcaact taagccatca tcttgcaggc
     7621 tgatattttc catcggaata aaatttgcca ccaaatcgta gctaaataat ccgcccaaat
     7681 agataggcga tgtggaatca gcaaacagtt ggctcaccgt tcttagcccg tcaaacacgg
     7741 tggtggtttt gagcttgctg tcttcatcta actggttgct gatggttggg aaaatcgctt
     7801 gcaagcggtc gtttttgtct aaaaatttgc aagtcggagc agggtttaac aggctcaatg
     7861 cgtttgcaat caaaggtaaa accgcttctc cgtttggggt taaagcgtgg aaagtcacgg
     7921 tttgatcttc acagaaaata tgcactgccg atttcgcaaa cagcaaactt tttacactgt
     7981 ttttactttg aatttccgct gaatctaata atagcgtatg tgggcgttcg ccgcataatg
     8041 cgtaataaac acgggtcgta tcggcaaaat agggtaattc tgtttgagta atcgttaatt
     8101 gaggcatagc aaattcctat tcaatttttc gtactattaa actagtacat taaaaagaag
     8161 tcaagcaatt attccagata attatgcgag cttgggcgaa cttggtgtat aattagccca
     8221 atttttagaa agtcgaaggc ttgagactat gacacaattt ttttatatcc accccgacaa
     8281 cccacagcaa cgcttaatta accaagcggt agagattatt cgaaacggtg gcgtaattgt
     8341 ttaccctacc gattcaggct atgctctcgg ttgtgcaatg ggcgataagc acgcaatgga
     8401 tagaattgta gcaattcgta aattgccgga aaatcacaat tttaccttag tttgtagtga
     8461 tttatccgag ctttctatct acgcgttggt caataatcaa gcctatcgct taattaagaa
     8521 taataccccg aatccttata cttttattct gccggcaact aaggaacttc ctcgcaggct
     8581 gatgacaaag cgtaaaacag tggggattcg tgtgccggat aatgcgatcg cattggcgtt
     8641 aatttccgcc ttaggtgagc cgattctttc ttgctcgtta atgttgccgg agacggaaat
     8701 gaccgagtca gaccctgatg aaattcggga tcatttgcaa aatcgggtgg atttaattat
     8761 ccacggtggt tatttagggc agcagcctac aacggtagtt gacttaaccg atgacgtgcc
     8821 ggttattatt cgagaaggat cgggcgatcc aacatcgttt aattaaattg atgttgtatg
     8881 attaatatat agaattatgc gtaggggggc tgtgccagtc cgtattaata tcgttatttg
     8941 gacaggcaca ggacctgtcc ctacaatgaa aatcaaattc agacgcttgt gaaagcgaca
     9001 aaaggaacct tatgacaact tttcaaaaaa aatcaactgc gactttccgt gcagacaaac
     9061 gtggtgaaag ccgtccctca tttaaaaaag aagagcaaaa atctgaacgc aaatttggta
     9121 aaacgtcaga aaaaccacca cgtccaactt ctaagccatt aacgcaaaga attgcaaaaa
     9181 aagtggaaaa aacgaccgct agtgaagtgg catctcaaga gaaaaaagcc aaagtagtag
     9241 gtgaaaagct acaaaaaatc ttagcgcgag cagggcaagg ttctcgccgt gaattagaag
     9301 agattatcgc tgctggacga gtgagcgtgg acggtaaaat ggctactctt ggtgatcgtg
     9361 tgcaggttag ctcatcgact aaaatccgca ttgatggaca tttagttaat ttaatgccgg
     9421 cacaaaaaga gatctgccgt gtattaatgt attacaaacc ggaaggggaa ctttgcaccc
     9481 gttccgatcc ggaaggacga tccaccgtat ttgaccgctt gcctcgttta agtggcgctc
     9541 gttggattgc ggtcgggcgg ttagatatta acacctcagg cttattattg ttcactaccg
     9601 atggcgaatt agccaaccgt ttaatgcacc caagccgtga agtcgaacgt gaatattcgg
     9661 tgcgtgtgtt cggcaacatt gacgatgcga tgttacaacg cttacgcaaa ggcgttcagt
     9721 tggaagacgg accggcaaac tttaaacaaa ttaaggttgt gggtggcaca ggcttgaacc
     9781 aatggtttga tgtgacttta accgaagggc gtaaccgtga ggttcgccgc ctgtgggaat
     9841 cgcaaggggt agaagtcagc cgtttgattc gtatccgtta cggcaatatc aaattagata
     9901 aaggcttacc tcgtggcggc tgggaagaaa tgggcttaga acaagtcaat tacttgcgtg
     9961 agctggtagg gttaccgccg gagactgaaa ctaaagtgga agtgggggta aaccgccgcc
    10021 gaaccaatat ccgtcaaatt cgtaaagcgg taaaacaaca tcaaaaatat cgtggctaaa
    10081 caccatcttt ggggctgcat tagttctgct aatgcagcta ttttctttca aaaaaggagc
    10141 atttatgtct tgggatattg ttgcaacatt ggcggtcact gggattgccg tatttttatt
    10201 tgcaactgaa aaaatgcgaa tggacgtagt tgcgatttta gtgctgtgtt cattagtatt
    10261 attagggcag gttgatacca aatctgctct gagtggattt tcaaactcag ctactgtaac
    10321 cgtaactgca atgtttgtat tagctgctgg tttacaaaat agtggtgctt tagatagtgt
    10381 aggcagttta cttgctaagg taaaatctcc ttggttattc ttgcttgtac tctgtggcgt
    10441 aaatgctgct gtttctcctt ttgtgaataa tacggcagtg gtcgcagtat taattccgat
    10501 tgtgattgcc gcagcacaga atataaaaat ggctccttcc aaagccctta ttccgttatc
    10561 attttcttct caaatggcag gtgtttgtac actgatcggc acttccacta atctattagt
    10621 taatgcaatc gctcaaaagc aagggcattc cggtttcggt atgtttgaat ttgccccttt
    10681 ggggattatt tttttagtgg ttggggttgc ctatttatta gtgaccagcc gtttcttatt
    10741 acccgaatca catttgcaac ttgaagatgg tgaggggttt ggaaaatatg tttctgaact
    10801 taaagtaaat aaagactctg tattaattgg caaaagtaca tttgaatcag gattaaatga
    10861 agaatttaat ctatttacta ttggtgtttt gcgtgatggg gaaagattat cgacaccgag
    10921 tcatcaagta ttgcaaaaac atgatatttt attgttgcgg ggtgaatcgg aaaatttagc
    10981 aaaagtacga gaaaaatatg gattgcacca cgttgtgtat ggacgccgtg agaatgatga
    11041 agataatctg gatgaagact tgatggtggc tgaagtgatg atttctccta tttctcgttg
    11101 gataggaggg actattccta ttttacaaca gcgttggaat aaaaatgcaa cggtgttagg
    11161 cattcaacgc caaagtaaag taattcgtga gcgtttacgc accactgctt ttaaaatggg
    11221 ggatatttta ttactcacat taccaaaaga ggatatggag acgttacgcc aagataaaga
    11281 ctttattgtg ttatcttctg atttagtcaa aacggaggaa tcgtggaaaa gtaaatttgc
    11341 tttaggggta atggttttgg tggtggcaac agcagcctta ggctgggttc ctatttcagt
    11401 gagtgcctta attggtgcag ttgcgatgtg tgttgctggt tgtttaacgg ctgaagaagc
    11461 ctatcaatct attgactgga aaatcatttt agtcttagct ggattactgc cattaggtga
    11521 agcgatggca aatagtgggg cggcgcaatt tattgttgat aacacgcttg gtaaagtagg
    11581 ggagttcggg cctttagtgg tgttagctgt attatattta ctgacaatgg tgttaaccga
    11641 atttatgagt aatgcaggga ctgccgtgtt gcttacgcct attgcggttt ctaccgctaa
    11701 aatgttaggg gtagatgctt ccccattcat tattgccgta atgtttgcgg ctgcgaccag
    11761 ctttatgacc cctgttggct atcaaaccaa cacgatggta tacggtgcag gtggctataa
    11821 attcacagat tttattaaaa ttggtttacc gctaaatgta atctattgga ttttagggat
    11881 agtattaatt ccgattttct tcccttttaa tccataattg atagataatt atagaaaaaa
    11941 ggtttacaga tcagaaactc tgtaaacctt ttttattcag caataaatca attttctatt
    12001 ggaaaattac cattgataac ccatgccaat actaccacca aagtcgcctc tggtattgct
    12061 gttaccagtt aatttataga taaccttccc gttatctgaa atccgagaat aacctactgc
    12121 gattgcagct tcattacggt atgtatctcc agccgttgct aacatacttt tacctggtag
    12181 atatgcttgc ggtaaacctg cggttgcagt tgcaccagca ataccagcgc gtaaacgttt
    12241 atcaactttg tttacttttg aatcaatatt attgatctta ttattgatat ttttttctgt
    12301 tgcttttaat tggctaaagt taactgcatc agtatcttca gttcctgctt ttacgttagt
    12361 cacttttgtt cctgctgcat taatacctgt tttagttata ctcggtcccc ctacaatagt
    12421 taatccatta gtatcaatgg ttgtatcacc agtcttaaca gtatcggcta cagcaatgtt
    12481 agctgttact gtttgagctg tgacagaatt aactttaata tctttagcta atttaaccgt
    12541 taatgaacca ttaccatttg aaataacccc gatattatta tcagttagtt gtgattcgtt
    12601 agatacccca ccttttactg taacagtaga acctaattta cgttgagatg gcgtgccggt
    12661 atcacctgca aatgttagtg ggctggttac tgcatcattt aacgcagtaa ttgcagagcc
    12721 tacattattg accgttttac taacttcatt tgtaggagcg ccatcaacca cagtatagct
    12781 tggggctgaa acagcaccat ttgcatttac acttgaatta ccacctaaag cggtagcaat
    12841 agtatttgcc gtatcgtaaa gttggctacc attaactgca tctgctgaga taggtgaaat
    12901 atcaccatca gctacattag ttatttttaa tttgccagca tcgacacctg tcattgtgac
    12961 acttgggcca ttattaatgg ttaagccgtt gttatttagt tttgaattac caacagctac
    13021 ggagccggca ggagttaaat caatgtcttt cgctaattta actgttaatg tgttagcatc
    13081 tgttgccact acaccgatat tattatcagt caatatggtt gcatcggccc cacctttaac
    13141 attcagagaa gtacctaatt tacgaacaat ttcagtacca gcatcatcta caaaagtaag
    13201 tgctccatta cttaactcat tcactttcgt gtttaaacca tcaatttcgg tataagcagc
    13261 ataaagttgt gaaccgttga tagcatccgt tgatgagtcc aaaatacgac ctgctgcaac
    13321 attcgttaaa gtacgttcat tgcctacaga accaatactt acagttgagc ttggcgtagt
    13381 acctgcaaat gtgtatgtat tgccatttag cgttgcactt tttgttgcaa ctgtggctac
    13441 tgtttcagag ttagtaccta atgcaacaga accttggtgt gttgcttttg cattttggcc
    13501 aagagccact gcagcagttg ttgttgcttg tgatgaaaca cctaatgcaa tagaagctac
    13561 accggctgca tttgcactat tacctaaagc aatcgcagag ctacctgcag cattggcatt
    13621 tctacccaca gaagttgacc atattccacc tgcattagca gagttaccta aagcggttga
    13681 ctgtgtaccc gaagcatttg cgttatagcc tgcagcaaga gaatctgcac cgattgaact
    13741 tgcttcataa cctacagcgg ttgaattttc accggtagct tcagatttag agcctaatgc
    13801 agttgcacgg gtagctgtcg ctgttgaagc tgtaccaata gctgttgagg tatcagcatt
    13861 tgcattggct gcagaaccaa ccgcgagggc atttgttgca tttgcattcg cattgtagcc
    13921 tatagaagtg gcattcatac catcagctgt tgcgcgagga ccaactgcag ttgtacgttc
    13981 accgtttgct tctgcttcag agcctaatgc ggttgccagc tcaccattag cacttgttgc
    14041 aacgccgata gccattggat taacaccgct agagcctgaa ttatcatagt tagcacgttg
    14101 aatgccatca tctgaaatac taacataatg agttgcaaat ttgctgatag cttgtttgag
    14161 ttgactgaca ttgaccgcat cagtatctac atcgcctgcg gcaacattgg cgattttatt
    14221 accgccatta tctaagccag atttagtaag acttaccggt ttgtctgcaa cgccgttagc
    14281 gatggtgata cctgtattgt taacaacggt atcacctgtt gttaatgaac cattagcgcc
    14341 taagttaact ttttctgcta attttatggt taaagtacta ttgccatcag ctacaacacc
    14401 aatattattc tcggttaata tgcctgtaga tccgcctttg atcttgactg ttgaacctag
    14461 atggcgctca aaattagttc ctgtatcacc ggcaaaggtt aacggactga tcaccgctgt
    14521 gtttaatgcg cttagtgctg cagaaacagt agtgtatctc ccttgtttgc cttctttatc
    14581 tgcatctggt gtgccattca ctaaagcgta ggttgggaaa gtgatatttc cattttcagt
    14641 aacagctgcc ccaccaccta agatatttgc ggttgttgca gcaacattac ctatagcttg
    14701 ttgtgttaaa tataattgtg aaccgtttat ggtatctgta gagcttaaag atatacgtcc
    14761 tgcagcaaca ttggtgatag ttctctcttt gccttccgcc ccaatactta ctgtagcaat
    14821 tggatttgtt ccagcaaagt cactatatgt aataccattt acagttgcat ttgtagttgg
    14881 tatggctata gctgtaactg agttgctacc tagcgctatc gaatcggtat gttcagcagt
    14941 ggcatttcga cctatagcgg ttgcattaaa ggcggaagca tttgatgatt ctccgattgc
    15001 aattgtgcgt tgatttgttg ctttagcgct tacccctagt gcaacagaag ccgcgcctga
    15061 tgcagtagca cgattgccta aagcggttgc agaacctcca cttgcattgg cttcacgacc
    15121 aaatgcagaa gcataatcgc tggttgcacc cgcattagta ccaacagcag tagttaaatt
    15181 tgctgttgca tttgcataat aacctaatga ggttgcaccg tggcctgaag tcttcgcttc
    15241 ataaccaatt gctgttgagt tatcgccatt tgcttgagat tttgcaccaa ttgctgtgga
    15301 gtgaatagct gttgcgttag cttcagcacc ataggcggag ctaacaatac cagttgcatt
    15361 ggcatgacta cctacagcag ttgcttttcc tattaccgtt tctcctgttg ctgctgtagt
    15421 tttgtaatta ttaacaccat ttgcaagagc ggaattaccg atggcgatat tatcatcact
    15481 ggttacattt gtagtaggtc ctgctagttt tgcattagca taagtaccaa ttgcaatatt
    15541 gtggctacca ctagtaccgt ctccagcagt attaccaata gaaatcgtat tgtttcctgt
    15601 tacattagag ctagccgaat aaccaatacc aatattgtat tctgtgctgt tagagtgatt
    15661 taatccggca tgatcgccaa taaaaacttc acgtaagccc attgcggttg cattgtaccc
    15721 tactgctacg gaacgtttat cggcagtggc ttgcccacca acagctgttg aagcaaaact
    15781 agcgttagca aagcctccta atgcagttga aaaatcggct gtcgcggttg tgttataccc
    15841 taatgctgta gaaactttac cgctatttcc ttctaagcct gttattgtgc ttactagtgt
    15901 tgagttaact ttagatccat caccaattgc gatagatgtt tgtgggttat tatctggtat
    15961 ggtcccatag gttggtgaat aggttgcagc acttgcaaaa cctgcagaaa gcgcaagact
    16021 tagtgtgctg agtttaataa tattagtggt tagtgatgta tttgttgcat tagatttatt
    16081 agcacttctt gataattcag aagcaacaat ccaagttcgt tttgcatggt tccaaaca
//
LOCUS       DANLXK010000055        15893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.055, whole genome shotgun sequence.
ACCESSION   DANLXK010000055 DANLXK010000000
VERSION     DANLXK010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(223..1257)
                     /locus_tag="PXD88_001417"
     CDS             complement(223..1257)
                     /locus_tag="PXD88_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6280992.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
     gene            complement(1300..1560)
                     /locus_tag="PXD88_001418"
     CDS             complement(1300..1560)
                     /locus_tag="PXD88_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6280993.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            complement(1640..2548)
                     /gene="glyQ"
                     /locus_tag="PXD88_001419"
     CDS             complement(1640..2548)
                     /gene="glyQ"
                     /locus_tag="PXD88_001419"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL6280994.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            2743..3354
                     /locus_tag="PXD88_001420"
     CDS             2743..3354
                     /locus_tag="PXD88_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL6280995.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            complement(3438..4055)
                     /locus_tag="PXD88_001421"
     CDS             complement(3438..4055)
                     /locus_tag="PXD88_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6280996.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(4058..5875)
                     /locus_tag="PXD88_001422"
     CDS             complement(4058..5875)
                     /locus_tag="PXD88_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL6280997.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            complement(6032..6721)
                     /locus_tag="PXD88_001423"
     CDS             complement(6032..6721)
                     /locus_tag="PXD88_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL6280998.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            complement(6733..8073)
                     /locus_tag="PXD88_001424"
     CDS             complement(6733..8073)
                     /locus_tag="PXD88_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL6280999.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSVE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            complement(8135..9493)
                     /locus_tag="PXD88_001425"
     CDS             complement(8135..9493)
                     /locus_tag="PXD88_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL6281000.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            complement(9546..10322)
                     /locus_tag="PXD88_001426"
     CDS             complement(9546..10322)
                     /locus_tag="PXD88_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL6281001.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIASVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            complement(10324..10956)
                     /locus_tag="PXD88_001427"
     CDS             complement(10324..10956)
                     /locus_tag="PXD88_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL6281002.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            complement(10953..12194)
                     /locus_tag="PXD88_001428"
     CDS             complement(10953..12194)
                     /locus_tag="PXD88_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL6281003.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            complement(12196..13101)
                     /locus_tag="PXD88_001429"
     CDS             complement(12196..13101)
                     /locus_tag="PXD88_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL6281004.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            13275..14033
                     /locus_tag="PXD88_001430"
     CDS             13275..14033
                     /locus_tag="PXD88_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6281005.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            complement(14173..15564)
                     /gene="ffh"
                     /locus_tag="PXD88_001431"
     CDS             complement(14173..15564)
                     /gene="ffh"
                     /locus_tag="PXD88_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL6281006.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
BASE COUNT         4529 a         3529 c         3111 g         4724 t
ORIGIN      
        1 aggggaattt gatcttcgta aatttataat tcatctttct tcattaagat tgtaaatagt
       61 cagatgaatt aaaattactc actaaatgat cgccccctct ttagccaaag agggggaggg
      121 gggagatttg aaaatctcta accacccacc aacggaatat gcaaccaaat cgtttccatc
      181 atactttcat tttgcaacat ttccgctgat tttaaccgct tgctatttta gtaaaaaccg
      241 ctctttcgcc ctttccaccg ccaaatgcaa ccgttgttcc aataccgctt tactcggcaa
      301 cacggtcata tattccgcaa tatgaatatc ggaatttttc aaatccaaca attccacttg
      361 ctcctgcttt ttaccggtgc agagaatcat tccaagcggt gggttttcgt ctgcttcttg
      421 ctcgtatttc gccagccacg ccaaatagag ttccatttga cttttgtggg aatgtttgaa
      481 gctttcggtt tttagttcaa tcgcaatcag gcgtttgagt ttacggttat aaaacagcag
      541 atcgatatag aaatcatcat tatcaatctg aatccttttt tggcgggcga caaaggtaaa
      601 acccgcccca agttccagta aaaactgttc gatctctcgt agaatcgcat cttcgagatc
      661 acgttccata taacggtcgt taaggtcgag aaaatccaaa atatagggat ctttcaacac
      721 cattgactga ttatattcgc ctttttcacg tagcaaactc aattcagcaa taatggtttc
      781 atcgggcttt ttggaaattg ccgtgcgttc aaacaataat gagccaatgc gatcttctaa
      841 tgtccttgta ctccaacgct cctgtgcagc cattgttgca tagaaccctc gctttgttgg
      901 atcatcaata tgaataatct gcttaaaatg tgtccagctt aattgtgcac gcagtgcgtg
      961 cacaatttcc aaattaggga aagttgtagc aaattgcatt gtataattta aatggcgttt
     1021 actccaacct ttaccaaatt gctccgtcag actttgagca agatttttca ccacttcttg
     1081 cccatattcc gcacgttcac cctgcaaaat atagtcattg atccgttttc cgatatgcca
     1141 ataaagcaag gttaattctg cattaaccgc aacggtcatt cgttgcttac tcgattgaat
     1201 aagttgtgaa atttcattca caaattcagc cgaattatct gctattactg tcttcattat
     1261 tggctccttt gcaacatttc cgccaaattc aaccgcttgt tagccgaaaa taccctctaa
     1321 ttcagccaaa tccagcacga ctttttcgcc ttcgatcagc aatgccggaa tgccaatata
     1381 gccgttggct ttggcgtggt caaaggcaga atgcgtgtct cgcagtttca aaaatggttt
     1441 aagtgttgag cctcctttgg tgatgtcgca cggctcatat tcaatgccca agcggtctag
     1501 ttctgccaca aatggggcgg tatccggaca ccaatcggcg aagtataaaa tcggtttcat
     1561 cgtaaatcct tgtagggaca cgatgcttcg tgtccgtttt gtaatttatt gacggacgcc
     1621 aagcgtggcg tccctacgat tattttttac accccgggaa ccccaacgct tcacggctgg
     1681 catagtacgc ttcagcaacg cctttggtta aggcacgaat gcgtagaatg tagcgttggc
     1741 gttcagttac cgagatcgct ttacgagcat ctaataagtt aaagctgtga gcggctttta
     1801 aaatgcgttc gtatgccggc aatggcaatg gtttttctag gcctaacagg tattgggctt
     1861 ctttttcgta ctgctcgaag cattggaaca ggaagtccac atcagcgtat tcaaagttgt
     1921 aggtggattg ctccacttcg ttttggtgga atacgtcgcc gtaggtggtt ttaccgagtt
     1981 cgccgtcaga ccacacgagg tcgtacacgc tgtccacgcc ttgaatgtac atcgccaaac
     2041 gctctaagcc gtaggtgatt tcgcctgtca ccggtttaca ttccaagccg ccgacttgct
     2101 ggaagtaggt gaattgggtc acttccattc cgttcagcca cacttcccaa cctaagcccc
     2161 acgccccaag cgttgggttt tcccagttgt cttccacaaa acgaatgtcg ttttgggttg
     2221 ggtcgaaacc gagcattttc aggctgtcga ggtaaagttc ttgaatgtta tccggcgaag
     2281 gtttaatcac cacttggaac tggtagtagt gctgtaaacg gttcggattt tcgccgtagc
     2341 gaccgtctgt cgggcggcga gatggttgca cataggcaaa cgccattggc tcagggccaa
     2401 gcgcacgcag gcaggtcatt gggtgcgagg tgcctgcccc cacttctaaa tcgaacggct
     2461 gcacaatggt gcaacctttg cttgcccagt agtcttgcag ggctaaaatc attccttgaa
     2521 aggtttttac gttgaatttt gtactcattt tattttctct tgaatttgaa aaatggtcga
     2581 aaaatactgg ttattatagc ttgtaagcag tcattttttg ggattttttt gcaaaaaatt
     2641 aagaaatcga cataaaatca gttttatgat gtaaatcaac gcttttttgc tcaatttgtg
     2701 taacatataa cctaatttct catctaattt gtggggttta tgatgaaatc attatcgaaa
     2761 atcgctttct gtttcttggc attcatcatg ccaacatttt gttttgccgg ttcaaacagt
     2821 tacaccacgg aaacaatccc tttatttgcc gatgaaaatt tgacacagaa aatcgggcag
     2881 ctagaagccg gagcagaaat taaattggtg caaacaaccg caaaagccgc tgaaattgag
     2941 ctgaatttat ggcgaaaaag caaaggtttc gggcggattt ggtatcattc tttcagtaaa
     3001 aatattaccg atgcggtatt tgagaaatct tttatcagca acaacccact gttagagatt
     3061 gtagagagca aggaagatcc gaacaccggc ttggtatggc aaaaagtgaa aatgaacgtg
     3121 tgggtggaaa atgccgaatt tacccaagat ctcactaact tttgggcgaa caccaaaaat
     3181 acctataaaa cagaatgcag cgtgtgccat aaacaacgtg atcctaaaat gcatgatgca
     3241 aacgaatgga ttgcagtatt taacggaatg gtcggtttta ccgatatgga cgaagctacc
     3301 cagaaaaagg tgcttcgcta cttgcagatg aatgcggcat ccagttctca ataaaataga
     3361 aaaagatctc acaagcggtc tgttttatag ttgcaaaata accataaaat atgcccgctt
     3421 gccttcgttg aaatatacta tcccctatta ataatagaga agatttgatg attttccgta
     3481 ctatccagta aacgcactat gcctgttgcg acagatttac ggcttacata cattttccgt
     3541 tcattaggta aatcacgcac aatctgatac tcatcattta cttcatcatt atttaaccca
     3601 ccgggtcgaa taatcagcca atttaatgct gtttgctgta aataagcttc agcttccgtc
     3661 ttggctttta gtgcttcacc taaagcttgc tgtgctaatg ggctaattaa atcccattgt
     3721 tctgcacacc caacactagt aactaaaact actttcgtag ttggtgaata tttttcaact
     3781 gcttttatca aattaatatt tgctgttttg tcgctacgaa taccttgttc attttttcct
     3841 cctactaccg taatcaagat ttccggttgt gttttttgta acaaggcgtt gcaggattcc
     3901 aaatctaata aatctgctat ttctactgct atatttcgtt cgctgaaaaa cgtatccata
     3961 gcatcttttc gtaagacggc tatcgttttc tctctaggta atttgtcaca gattgctcgt
     4021 cctaacaacc catttgcccc acaaaccaaa atcatgacta gcatcctcca attaatttcc
     4081 gcatggcttg aatctgattt tctcgtaatt gaccttgttc atcacgccca acaaaaatct
     4141 taaacatcgc ctcaccgctt tgattgataa aagttaacgc caccgttctt tttcccataa
     4201 atgggcgatc aagtaagtaa atagcagcac aattttcata gcgtaaatga ccgtgaattc
     4261 ctccatctac accatgttca aaattataaa aacctcgccc aattttacct tgtggcaatt
     4321 tagcagttac ctctgcaatc gcatcaggcg tatgaataat aaaagtcaca gcttcattcc
     4381 aaccagcaat tgcctgcata atttccacaa aacgctcacc acctgtttgc attaccattt
     4441 ctttgggcag acagttaatt accgattcca agctacattg attcattcct gccagcattt
     4501 ctaaaatttg ccctgggttt tcttttaaat ttgtccgcaa tttattttct aattctttag
     4561 ttaatggcgt tatcatgttg ttatccttac ttgattgagg aagtgttaac attagtttac
     4621 gaattaatgt tggtgaccag taacgaccac tggtattgag atatacttga tttttttcac
     4681 gcttcagtaa atcaagcgct tcccattgtt gcaataattt ttcagctttc gcattttgtt
     4741 caaaaggcgt tgtatctaag taacccaatt ccatgctatg ttgtatcaca ccaagcagtg
     4801 ctttatgttc accatgttta ctcaaaaaag aaaggctttt ctgatcaaga ggcgaatcta
     4861 agtaggtctt taaatcagat tgtacttggt aactcagccc accaaaattt ccccccgcac
     4921 cggagccaaa tgccaaacaa ggcatattcg atttaaccaa agtattatag cgattgcgtt
     4981 cacctcgatt tggaaaagca aagtggttat tgctcacttg ctgccaacct tgtgctttta
     5041 acttctctac tgcataagca tagtgtaagc tttgggtgtc aaaccctgcg ggcgcaggta
     5101 attttccatg ttcaattaag cgattaatag gcaggaaagg ataattatta aaggcgtaaa
     5161 tatctaagcc tgagatcggt aaactagtcg caatttcaat atcgttttgc cagatatcat
     5221 ctgtttggtt tggcaagcca aaaattaaat cagcaacaat cacagcattt aattccgata
     5281 aggcttttaa ataagtttga gcctcttcgc cactatgttt gcgccctaaa cgtttgcgaa
     5341 tttcggagtt aaaagtctga ataccaatag aaatacggtt cacgcctgct tcaatacaag
     5401 ccttagcctt atctatatca aaatggctaa ttctaccctc aatagtaaat tcacagtctt
     5461 cagcgagtgg caaataacga taacaagctc gaatcaatcg tactaaatct tctgtatgta
     5521 acgctgttgg cgttcctcca ccaaaataaa cggcatgaat cttaccttgt cctcgccata
     5581 gtgaagattc atatcgaagt tcactaatca cacgatcagt ataaatctgg ctataatttt
     5641 ccttccaagc attgcgataa aaaccacaaa aaatacaatg actagcgcaa aacggaatat
     5701 ggaaataagc taaaccatcc tgtaataacg catttggtgc ttgttccagc cataaagatt
     5761 gccattgatt gcgttcaata tttttcccac cccaaatagg cataagtgcc tgtcgttctg
     5821 ggaaagcatt tggagaggct tgttgagatg tccagtgtgt atcttttata atcattatcg
     5881 aaacaaaata gtgctataaa caaggtcata tttataacaa aattaagtta tgaatgactt
     5941 gattaaaatc aaataataat tattttcaat taatgattga gttatgctta ctatagtaaa
     6001 tagcctctcc taaaatgaat atatctgtgg tttattgctg taattccaca atacaagtca
     6061 cttgactgga atctaaccct ttaattcgcc acggtgcatt aaaaaactgc ttaatgttgg
     6121 catttttagg gagttccgct aagtgcatat cttcaatcac agtggtaaac ctgccggtat
     6181 agtagcctaa aatcgctcga tggcaatttt tagggttttc cgcatcaggc actcgggaag
     6241 aaggagaccc tagtgccaag aaatcaatgc ctactccttt caaattcggg aaagtatcag
     6301 ataaatactg cccggcaccg gttgaaatat aggggcattc attttgataa atagcagggt
     6361 tctcggttct atatttctca aaccccgttc gtaaaaaggc aaaagacacc ttggagagaa
     6421 tatcgacata aggcaataaa tcttctttgg tgatcccttc tgcctctcct ttgggaattt
     6481 caattaaagc gacctcttta tggcagaaat actctatcgg caattcattg atacttaaac
     6541 cgtctttcac aaagtggcga ggagcgtcca tatgtgtgcc gcaatgattc ggtagtttcg
     6601 tgataaaact gctaaatggc gtttcttcac ctacgtctgt gcagcgagtc acctcaacaa
     6661 caggttctcc cggccaagct aaatctttag gatctaacgg gtgagacaaa tacataaaca
     6721 cagtgagcct ccttagtggc gtttttgctg aagtaaccac ccaatcacct cagggctgtt
     6781 atacacagcg tcccaagtat tatgagggtt attattgaca atgccgttgt cgccggcttg
     6841 ttcaaaagtg aattcggtat atttcacatt gggggcattt aactcatctt tgagaatgcg
     6901 gtagttaatg cgagaacctt ttaccggcga gactttgtcc tctttactat ggaaaaacca
     6961 aatcggtata tgtttaattg ccgccaaatt cgttttggtg gcattgccgt ccacccattc
     7021 gttggtgtag gcttcacgac cgctcattaa taatgctccg gcaaagaaat tcgggcgagc
     7081 caacaacaga tttaagcccc cttcagcacc tcgagataag ccattgatat aaatgcgtgt
     7141 ggtatcaatt tgaggattgg cttttagggt ttcatcaatc atttttaaca cgagattgat
     7201 acgattttcc gtttgccagt gaataccgcc tttttgccct ttggcggcat tatcaaatgg
     7261 gtcgaatact tggtcgtatt gcggagcaag tacaaaactt ggggcataag gcagggtggc
     7321 aatcgcccct ttactggaaa gcaggtgagc aaggttatcc gaaccgactt gccctgaacc
     7381 gtgtaggaaa atcacaagcg ggtatttttc accatttttt tgcaaaggcg aatagagacg
     7441 gtagttcagt ttatttccag actggtctaa gctcacttgt tttgcgacaa aatcatcgag
     7501 ataaggggtt ttgattttgt cgggttcagc ggtttgtgtc cattcagtct tgcctagagt
     7561 tgtgccgctg gttaatttaa gcaagccttt ttgttccacc gaatagatta ggcgatttgc
     7621 aaaaaactct ggaattttga ccgcttgtac tttctctgtt tctacaatgt tgccgttttc
     7681 atctttggat ttaaatttca tcggcgcttt attagcatct tttacgctat aagttgccgc
     7741 atttttatct gccgtatcca attcaataat cacaaattta ccggcttgcg gaagtgcggt
     7801 cacttttggc tcattattga cataggcttt gagcaccgaa cggttttctt tctccgcact
     7861 atctaatgcc gttttgacct gatacagttg gcgaagatcg ctgcctgata agacattatc
     7921 aggatattcc aatgccacgc cgttaatttt ttgaccttga gcggtgattt cggcaagcaa
     7981 cgtaatattc gctgatttat tttcctgaat catatcctct gcatagaggg agtgagaaag
     8041 taatagcgta aataaaagtg tttttttcag cataggtttc tcctaaaaaa atccacctca
     8101 taagaggtgg attttaagca gtaacagagt gatattaaac gaataacatc caaataatgc
     8161 caacaacggc aaaggctatt acaccgaaaa tagtcgttaa aaacgtccaa gttcttaagc
     8221 ctacggatac aggaacattg aagaatttcg tccataccca gaagagtgaa tcattcacgt
     8281 gggataatgt catagaacct gcaccaatag ctgcagtaag aagtgctaat tgcagatcat
     8341 tataacctgc tgctacagct gcaggagcta gaatagttgt agtagtaata gttgccaccg
     8401 ttgcagaacc ttgtgctgca cgcaataatg cagaaagtat gaaagaaaga accaataacg
     8461 gtaagcccgt gttggctaat acatctgcta atgctttacc tacgccactg gcatctaaca
     8521 ctttaccgaa cataccgcct gcaccggtga ttaaaataat ccccgcaatc ggtgctaacg
     8581 cagactccag tacttcttct aatttatgct tagtccaacc gtatctaaaa cctaatacat
     8641 aagcagaaag acaaacagcc acaaataagg caaacggaga gcttcctacc atactgaata
     8701 cttcacgcac gatatgttct ttcggcaagg ttgttgccgt tactgtacct aacataatca
     8761 ggattagcgg gaaagaaatc attgctaaca ctttaccaaa agaaggtagt tcaatgcctt
     8821 tctctttaat caaatctttt tggtgctgta aaagatcggt tgaagttact acttttacga
     8881 aattattttt tgtaaagaac ggaataaatt tttgaccgat taaatatgca ggtagcgctg
     8941 ctactaagcc aattcccaat acaaagccaa tatctgcgtt taagttttga gcacccgcta
     9001 caatacctgg atgaggtgga actaaaacgt gaacaagtaa catcgcaagc ccgattggca
     9061 aagaataaac aaggatattt ccccctaaac gtctcgctac actaaaaata atcgggagca
     9121 atacgataaa accaacatca acgaaaacag gaataccgaa tataaaacct gtcataccta
     9181 atgcaaaggg agcgtttttc tcaccaaaac gctgtaacaa ccaatttgct aatacatccg
     9241 caccgtgaga tttttcaatg attttcccta acattgctcc caaacctact atgagtgcaa
     9301 cgctacctaa agtacttccc atacctgaaa tcaaggttgg gatcacttta ctcattggaa
     9361 tacctgcagt taaggcaact gcgatactca ctaaccccaa tgctaagaat gggtgtactt
     9421 tacctttaat cataatgacc agaagagcaa ctacgcttgc taatccaatc aaaattaaca
     9481 tttcatttga cataaagttt ccttctaaat gttgtattca cgtatttatc cgctaatcat
     9541 cgtggttatt tatactgctc aaaccaacct agtcctgagg tggtttccgc tcgtggttta
     9601 tactcgcaac ctacatagcc ttcatacccg atttcatcga gtttgttgaa gatatattgg
     9661 tagttaattt ccccttcgtc cggttcgtgg cgatctggca cagaggcaat ttgaatgtgg
     9721 gcaaatttac ccttgagttt gtcggttagg cgagataagt tgccgtccac attctgtgcg
     9781 tggaagtagt caagctgtac aaacacattg tctcggttta ccgcttccac aatttctagc
     9841 gtatcaaact ggcttttaag cagataattc ggtttcactt cagggcttag ggcttcaagc
     9901 aagacgttaa tgccgtgcgg tttgaattta tcggcggcat attgcacgtt tttgataaag
     9961 gtttgtttat aggcttcacg atcttcgcct tctggcacga ccgctgccat aacgtgaaca
    10021 ttctcacaac ctaaggcgag ggcatattcc aacgctaaat caatatcacg atggctatca
    10081 gcttcacgcc ccggaatggc agaaacaccc cattcacctt gagcaacatc tccggctgcg
    10141 gtattgaaca acacctgttt taagccatat tgctcaagtt tggctttcaa ttctgctgcc
    10201 ggataatcat aaggccataa atactcgaca tatttaaatc cagcgttggc agccgcttca
    10261 aaacgatcta aaaacggcac ttcgttaaac atcatcgtaa ggtttgctgc aaatttaggc
    10321 attttatttt cctctgtttt tcagatcatt gacttcgtca tcggtgagat aacggacttt
    10381 ttgaccttgt agaataaaat agagcttgga ggtttcttcc aactcttctg tgttatccac
    10441 cgcatcacgc aagtctgaac ctgtgactac caccccgtga tttgccagta aaaaggcttt
    10501 gccgtctaag gctcgttccc ccagctctcg ggcaatgttg atgtcgcccg gacggtagta
    10561 aggaatgacc ggcaattttc ctacccgcat cacatagtaa ggggtgaaag cacgcatagc
    10621 gttgtcggta tccaaatttt ccaagcaaga aagtgcggtt aaataagtgg aatgcagatg
    10681 cactattgct tggcaagccg gatttttctg atacatcgcc aagtggaata ccgattcttt
    10741 tgaaggttta tctcctgaaa gaacattacc ctgcatatcc aatacggaaa ggcggtctgc
    10801 ctctaaacgc ccgagcgaag agccggttgg ggtaactaaa atgcgatttt catctaaacg
    10861 cacggagagg ttgcccgcac cgccaacggt atagccccgc tcaaacagcg agcgggcaag
    10921 attgaccatt tcaatctttt gttcttgttc tgtcatacaa acatctcctg agcaaaactg
    10981 aagaaatctt ctttaccgaa gttacccgat ttcaatgcaa gaaaaatcgg tttttcgacc
    11041 gcttgtaacc acggcacgcc cggtgcaatt tgtttgccga tgtggaaacc gctgaatcca
    11101 agttgctgaa ccacaatgct cgaagtttca ccgcctgcgg taataaagtt agttacgcct
    11161 gcggcttgta atttttcggc taatttggca aaggtatttt caatggcgtg gctggcttta
    11221 tcgccgccga attgggtttg aatctctttc aatttttcag ggggaacggt ggcataaacc
    11281 attggggcaa agtcaccgtc taggtttgca atcacccatt gataaagcgt ttctacatag
    11341 ttcggatcct gaatggcttt ttccgcttct aagaaataac ttggggcttt ttgctggtaa
    11401 gccgccactt gggtattggt cattaccgag caagaacccg aaagcacaac ggttttgcct
    11461 ttgcttggta caaacgcatt cgtgcctttt ttgccgcctg aacggtaagc cgccatataa
    11521 gcccctaagc ctgaaccgcc tgtgactaat tgaaaatcgg caaccgcttc ggcaagcacc
    11581 gcaagttgtg aattatcggc agcatctact accgcatatt tgtagccttg ctgtttcaat
    11641 tcagcaaaac gggctttcac acgctctgcc ccttgaatca catcagcata ggcaaccaag
    11701 ccggttttgc cttgagattg tgcatccatt aaacgcacca agttggcatc tttcatcggg
    11761 gtaatcgggt ggttacgcat accagattca ttcagtagca catcgcccac aaacaaatag
    11821 ccgttgaaaa tggttctgcc attgacaggc agagccggtg tgactacggt aaaatcggta
    11881 tctaatgccg ccattagggc atcggttacc ggcccgatat tgcctttctc cgtgctgtca
    11941 aaagtggaac aatatttaaa gtagaattgc gagcaaccat tttgtttcag ccaatctaag
    12001 gcttgtaatg attgttggat tgcttcttcc acagggttag agcgagattt caggctaatc
    12061 acaatcgcat caacttgact gttaagtgta gttttcggca caccattcat ttgcaccgtt
    12121 tttagcccgt tttcggttaa gaaactggcg atgtcactcg caccggtgaa atcgtctgca
    12181 ataatgccta acatcttatt tcccctcttt tttaggtaat tcgataccac tgaaaatttt
    12241 aatgaccgca ctatcatctt ccttgccgta acctgcgttg ctggcttcgg taaacataga
    12301 ataagcggtg ctggctaagt gaagcgggaa acgcaaagat tttgcggtgt cgttcaccaa
    12361 tcccaaatct ttcacaaaaa tatccaccat agagagtggg gtgtaatcgc cctcaacaac
    12421 gtgtttcatt cggttttcaa acatccaaga attgcctgcc gcattggtta caacgtcata
    12481 cattaaatca agcggaatac cggcacgagc cgccaatgcc attgcttctg cacctgcggc
    12541 aatatgcaca ccggcaagta attgatggat aatttttacc gttgcaccca agccgacttc
    12601 ttcgccaatg ttatacactt tgcctgcaac cgcatctaat accggtttta atttctcgaa
    12661 tgcctcgctg gaacctgatg ccatcacagt catttcacct tgtgctgctt ttgctgcccc
    12721 acccgaaacc ggagcatcta acatcaccaa gcctaaatct gttaacttct gtgaaatatt
    12781 ttttgcatct tgtgcagaaa tggtggaaga taccatcacc accgtacctt gtttcaaatg
    12841 ttgggctaag ccgttttcac cgaataacac cgcattcact tggttggcat taaccaccaa
    12901 caacaacacc gcatctaatt cagcggcaaa atcgaccgca cttgtgccga ctttcttagc
    12961 acctgctgct tttaaggttt ccagataatt cgggttaaga tccacaccgt atgtgtctaa
    13021 tccggcagcg atacaagatt ttgctgctcc catacccatt gctcctaagc cgatgacggc
    13081 tacgctatat ttttgactca ttgtttattc cctcaaataa attaatgaac ttgatggcgg
    13141 tatattaacc aatagaaaag ataaaatctg tgatgaagat cacaaatatt aacaataaat
    13201 gtgaattttt gtgattttaa ttttggaaac taaatctgat ataatctctt ttaacaatta
    13261 aaataggtta aaaaatgatc cccttagaga gacaacgaga aatactacga cttattaata
    13321 ataatggtgt cgcaagtatt aattttctgg cagaacagct aaaagtatca catatgacaa
    13381 ttcgccgtga tattcaaaag ctggaagagc aaggtaaggt atccctagta tctggtggag
    13441 ttcaatctct tgaacgatta atcatggaat taccacacga tgataaatca atgttattcc
    13501 aagagcagaa atcagctata ggatctttag catcacagct aattccctca aacacaacta
    13561 tttatcttga tgctggaact actacattag aaatagctca tcggataatc gatagaaatg
    13621 acttactagt tgtaacaaac gattttgtta ttgctcacta tcttagtaat tcaggaaaat
    13681 gtgatttaat tcatatagga ggaagtgtct gtaaagaaaa cctatcgaca actggttcac
    13741 ttgcagcaga atttctgaaa aacctatcaa tcgatatggc atttatatct acttcatcct
    13801 ggaatttaaa aggtctaaca acgccgaacg aaaataaaat ccccgttaaa aaagcaattt
    13861 tagaggcatc caagcaaaac attttagtga cagactcttc aaaatatgga aaagtcgcaa
    13921 ctttttttgt ttgccctctt actgtatttg accagattat ttgtgataaa ggattatttg
    13981 agaatgtacg agacgcactg aaagggctaa gtattaaatt agatttagga taatcttctt
    14041 accaattttt tctgagaacg acaagcaatc aaaaagtatt atttttgcaa ataagatatt
    14101 aatagggaaa gttaacaatc ctagcaacgg attgttaact gattttcggc tggtactaat
    14161 aaaataggaa tattaacgtt taccaaacat actgcctaag ccaccgagac cgcctagacc
    14221 accacccatc atacctttaa caccacgcat catttttgcc attccgcctt tacgcatttt
    14281 tttcatcata cgttgcatat catcaaactg cttgagcagc ttatttacat cttgcacctg
    14341 tgtgccggag ccaagtgcga tacggcggcg gcgtgagcct ttaataatat ccggatttgc
    14401 ccgctctttt aaggtcatag aattgatgat ggcttccatt ttcatgaaca ttttatcatc
    14461 aacctgactt ttaacgtggt caggcaggtt tttcgccccc ggtagtttat cgagcatcga
    14521 catcattcca cccatttttt tcatttcgat aagctgctca cggaaatctt ccaaggtaaa
    14581 ttcatcgcct tttttgaatt tggcggcaat tttttccgct ttttcttgat caaccgagcg
    14641 ttgaatatct tcaattaaag acattacatc gcccatacct aaaatgcggg aagccacacg
    14701 gtcagggtgg aacggctcaa gggcatcagt tttttcaccc acacctaaga atttaatcgg
    14761 tttaccggtg atttggcgaa tagaaagtgc cgcaccgcct cgggcatcgc catcgacttt
    14821 ggtaagaata acaccggtaa gcggcaacgc ttcgttaaag gcttttgcgg tgttggcggc
    14881 gtcttgaccg gtcatcgcat caaccgtaaa tagcgtttca atcggattca gcacagcgtg
    14941 gatttgttgg atctcttcca tcatttcgcc atcaacgtgt aaacgaccgg cagtatccac
    15001 aatcaataca tcaaagaaat taagcttagc gtgcttcagt gccgcttctg caatcgctac
    15061 cggtttttgg ctggtttcgg tcgggaagaa gtccactttt aacgcttcag caagggtctg
    15121 tagctgcttg atagcggcag ggcggtaaac atcggcagaa actaccaaca cctttttctt
    15181 gtggcgttct ttcaggaatt ttgccaattt gccgacagag gtggttttac ccgcaccttg
    15241 caaacctgcc attaaaatta ccgcaggcgg ttgggccgca agattcagct cctcgttggc
    15301 ttctcccatt gccgtttcta attcgctttg tacgattttt aagaactctt gccccggcgt
    15361 gaggcttttg tttacctcaa cccctaacgc acgctctttg accttgttga tgaaatcacg
    15421 cacaacaggg agggcaacat ccgcctccaa caatgccata cgaacttcac gcagggtatc
    15481 tttaatatta tcttccgtta ggcgaccttt gcccgtaatg ttacgcagcg ttttagacag
    15541 tctgtcagag aggttttcaa acatatcagc tttctcaatt tgcaaaattt taggaaaaaa
    15601 gtaccgcttg tgagcggaaa gttgccgcca ttatacaaaa aaaagcgtta cggttatagg
    15661 gaaataaaaa aacggcatag cgattaaact atgccgtaaa atttgacgat attcgaggaa
    15721 tcattattta gttatattgt gcgatcataa tactccgaat tgcgtataaa agtgaagtga
    15781 tattttcaaa tttatgttag aaatgagagg taaattacaa aattaaaggg gatattattg
    15841 tttgaaaaaa taagagcgaa aagaaaaccc tgatgattgc tcatcagggc ttc
//
LOCUS       DANLXK010000056        15777 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.056, whole genome shotgun sequence.
ACCESSION   DANLXK010000056 DANLXK010000000
VERSION     DANLXK010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15777
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            1..996
                     /locus_tag="PXD88_001432"
     CDS             1..996
                     /locus_tag="PXD88_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL6281007.1"
                     /translation="MIGKAILDSKNTDLILSEIPNKILFLRHDGKIGDYVVSSFVFRE
                     IKKQSPQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGGKQLAKEQYDVVI
                     DPTVTLRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSEIYQDALALIGFE
                     NIETQYDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSEQKINELLSCLKQ
                     HSDKPIVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRFADLLISPDTATV
                     HIASGLSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDFAAIKPEWLK"
     gene            998..1888
                     /gene="ilvY"
                     /locus_tag="PXD88_001433"
     CDS             998..1888
                     /gene="ilvY"
                     /locus_tag="PXD88_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL6281008.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(2022..4424)
                     /gene="lon"
                     /locus_tag="PXD88_001434"
     CDS             complement(2022..4424)
                     /gene="lon"
                     /locus_tag="PXD88_001434"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL6281009.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      4628..4746
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            4922..6019
                     /gene="ribD"
                     /locus_tag="PXD88_001435"
     CDS             4922..6019
                     /gene="ribD"
                     /locus_tag="PXD88_001435"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL6281010.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            6236..6883
                     /gene="ribE"
                     /locus_tag="PXD88_001436"
     CDS             6236..6883
                     /gene="ribE"
                     /locus_tag="PXD88_001436"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL6281011.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            6902..8101
                     /locus_tag="PXD88_001437"
     CDS             6902..8101
                     /locus_tag="PXD88_001437"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL6281012.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            8307..8771
                     /locus_tag="PXD88_001438"
     CDS             8307..8771
                     /locus_tag="PXD88_001438"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL6281013.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(8817..10325)
                     /gene="lnt"
                     /locus_tag="PXD88_001439"
     CDS             complement(8817..10325)
                     /gene="lnt"
                     /locus_tag="PXD88_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL6281014.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(10384..11283)
                     /gene="corC"
                     /locus_tag="PXD88_001440"
     CDS             complement(10384..11283)
                     /gene="corC"
                     /locus_tag="PXD88_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL6281015.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            11421..12029
                     /locus_tag="PXD88_001441"
     CDS             11421..12029
                     /locus_tag="PXD88_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL6281016.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(12110..12493)
                     /locus_tag="PXD88_001442"
     CDS             complement(12110..12493)
                     /locus_tag="PXD88_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281017.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(12523..13092)
                     /locus_tag="PXD88_001443"
     CDS             complement(12523..13092)
                     /locus_tag="PXD88_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL6281018.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            13151..13996
                     /gene="nfo"
                     /locus_tag="PXD88_001444"
     CDS             13151..13996
                     /gene="nfo"
                     /locus_tag="PXD88_001444"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL6281019.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            14124..14696
                     /locus_tag="PXD88_001445"
     CDS             14124..14696
                     /locus_tag="PXD88_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6281020.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(14763..15221)
                     /locus_tag="PXD88_001446"
     CDS             complement(14763..15221)
                     /locus_tag="PXD88_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6281021.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(15395..>15777)
                     /gene="grcA"
                     /locus_tag="PXD88_001447"
     CDS             complement(15395..>15777)
                     /gene="grcA"
                     /locus_tag="PXD88_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL6281022.1"
                     /translation="IKGVQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVA
                     ISELGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGY
                     AVRFNSLTPEQQRDVITRTFTESL"
BASE COUNT         4683 a         3085 c         3332 g         4677 t
ORIGIN      
        1 gtgataggta aagccatttt agatagtaaa aatactgatc tgatattatc ggaaattccc
       61 aataaaattc tatttcttcg tcacgatggt aaaattggtg attatgtcgt tagttccttt
      121 gtcttccgtg aaataaaaaa acagtctccc caaacgcaaa taggcgtggt ttgctcacag
      181 aaaaaccgat atttatttga gaataatcct tatattgata agctctattt ggttaagaca
      241 aaaagtattc ctgattatat tcgtggtggc aaacaacttg caaaagagca gtatgatgtt
      301 gtaatcgatc cgactgttac tttacggaat cgtgatctct tatttttacg cactatatca
      361 gccaaacatt atgtaggtta tcagaaacaa aaatatcgat tatttgatct aaatgtagag
      421 gatagaaaac agcatttttc agagatttat caagatgcgt tagctttaat cgggtttgaa
      481 aatatagaaa ctcagtatga tgtgccacta aatgccacaa gcaaccaatc cataaagcat
      541 tatttatatg aaaaccaaat tagaaattat attgcgttaa atctttttgg tgcaggttcg
      601 gcaagacgtt ttagtgagca gaaaattaat gaactgctga gttgcttaaa acagcatagt
      661 gataaaccga tagtcttact tacttttcct gaagtaacgg caaaattgtg ttcctttact
      721 aagaagtata aaaatatatt tgtctatgag aaaaccaaaa gcgtttttga ttcaatagaa
      781 ctgattcgtt ttgcggactt attaatttca cctgatactg caaccgtgca tattgcctca
      841 ggcttgagta aaaagataat tgctttttac agtagcgatg aacagaattt tatacattgg
      901 catccgaata atcaggctga aacccatatt ctccgtttta gaaaaagcgt gaatgattta
      961 gattttgctg caataaaacc ggagtggcta aaataatatg gacttccaaa gccttaaact
     1021 tttcctagat atagcccaaa gccgtagttt tattcgcagt gcggagaaga attatatgac
     1081 ggcttccaca cttacccgcc atattcagcg tatagaggag gagctcgggc agccgttgtt
     1141 tctgcgtgat aatcgacaag tgcgtttaac tgaagcaggg gaaaggtttt tggcgtttgc
     1201 tcaacaaggt tgggcagagt ggcagcagtt gcaaaaccag ttgtcgcctg ctcaaggtga
     1261 tttagaagga gagttgaaag tgttctgctc ggtaacggct tcttacagcc atttaccgcc
     1321 gattttggga aagtttcgcc aaaaatatcc gaaagtggat attaaactga gtaccggtga
     1381 tccggctttg gcattggaac aggttcagtc attggctgca gatatttcgg ttgcgggtaa
     1441 gccggaattt ctgccgaata atattgtgtt tcactatatt gatgatattc aactttcgat
     1501 tattgcccct cgtgtggcga gccaagccac tcaatttctg caacagtcgc cgatagattg
     1561 gaaaaatatc ccctttattt tgccggtgaa cggacctgta cgaaaacgga ttgaccgttg
     1621 gtttaaagag caaaaaatca aagacccgat tatttatgct accgtctccg gacacgaagc
     1681 gattgtgccg atggttgcac taggctttgg ggtcgcactg ctaccggata ttgtgattaa
     1741 gcatagccca atgaataatc aagtttctta tgtgaattta ccctcgccga tcactccgtt
     1801 tgagctggga atttgcgttc agcaaaaacg cttgcaagag ccgatcatca acgcattttg
     1861 gcaattattg tctgataatt cagcataaca agcggttaga ttttgctaaa tttttgcaaa
     1921 aaatagagca aaaccgaccg cttgtagata aaactttcag ataaaaaata aggtgcgtga
     1981 ttgtgatctg cgcaccttat gttgttttag attattgcac tttattgcac tgtggcttta
     2041 gctcgcgatt ttttcacctt gatctcggct tttgacaaga tttcaatccc cattggcggg
     2101 ttttctagtg ccagagctag tacctcgtca atggtttcta ctgcgtgaat gtccaacgct
     2161 gcttttgcat tttccggaat ttcctctaag tctttttcat tttctttcgg aataatcacc
     2221 gtcgtaatac caccacgatg ggctgccagt aatttctctt ttaagccgcc gattggcaat
     2281 actttgccac gcaagctgat ttcaccggtc atcgctactt ctttacgcac agggttacct
     2341 gttaggctgg aaattaatgc agtacacatt gcaatccctg cactcggacc atctttcggt
     2401 gttgcaccgt ccggcacgtg aacgtgaata tcccgttttt cgtggaagtc ttcagcaatg
     2461 cctaattttt ctgcacgaga gcgtacaacc accattgccg cttgaataga ctctttcatt
     2521 acatcgccta atgaaccggt gtaagagaat ttgcctttac ctgcaacaga agcggtttca
     2581 atggttaata aatcaccgcc aacttctgtc cacgctaaac cggtcacttc gccaatgcgg
     2641 ttttggctat ccattttgcc gtagtcaaaa cgttttacgc ctaagtattc ttcgatattt
     2701 ttctcagaaa ctgtaatgga ttttaatttc ttatccaata ctaaagcttt cacggcttta
     2761 cggcagattt tcgcaatttc acgctcaagg ctacgcacgc ctgcttcacg ggtgtagtag
     2821 cggataatac ttaaaattgc actgtcttca atggtcagct caccctcttt tagtccgtta
     2881 ttttcttgct gtttagccag taaatgacca cgagcaatgt gcattttctc atcttcggta
     2941 tagcctgaaa gacgaatcac ttccatacgg tcgagcaatg ctggcggaat gttcattgag
     3001 tttgaggttg ccacaaacat tacatcggat aaatcgtaat ccacctctaa ataatggtcg
     3061 ttaaaggctt tattttgctc aggatctaac acttcaagca gagcagaagc cgggtcgcca
     3121 cgcatatctt gagccatttt gtcgatttca tctaacaaga acagcggatt acgcacgccg
     3181 actttcgcca ttttcatcat taggctaccc ggcattgagc cgatgtaagt acggcgatgc
     3241 ccacggattt ccgcttcatc acgcacgcca cctaacgcca tacgcacata tttacgccct
     3301 gtggcattgg caatagattg ccctaatgag gttttaccaa cccccggcgg accaactaag
     3361 cacaaaatcg gaccttttaa tttatttaga cgactttgca ctgctaagta ttctacaatc
     3421 cgctctttca ctcgttctaa gccgtagtgg tctttatcca aaatctcttg agcttgggct
     3481 aaatcttttt tgaccgctga ttttttatgc cacggcattt gtaaaatcca gtcaatataa
     3541 ccacgcacaa cggtagcttc ggaagagctt tgcggcattg ctttgagctt tttgaactcc
     3601 gtattcagct tgtcttttac ctcggtcggt aattttgcag cgtcaatttt ctctttaagc
     3661 ttatctaact cgctttgttc aacgtcatcg ccattaccta actctttttg aatcgcttta
     3721 atttgctcgt tgaggtagta atcacgttgg tttttttcca tttgctgttt aacacgatta
     3781 cgaatccgag tttcggtttc aagcgtatcc atctcagttg ccatcgcaat taacaaggct
     3841 tcaaaacggg caatcagatt tggttgctcc aataattcct gttttttctt caccggagca
     3901 attaagttag aggcaatggt atccgccaag cggtcttcca acgtgatttt ttgcagttta
     3961 gcaataattt ccgccggaat tttcttgtta tttttaacgt aattttcaaa ttcggttaaa
     4021 gtggttttag caatcgcttt taactcttcg ttttcgtcat catattccga atatattggc
     4081 tgaattgccg cccagaagcc gttttcatca tcgtgaattt gctcgatttt ggcacgggtt
     4141 tgtccttcta ccagcacttt aactgtgccg tccggcaggt ttaacatttg aataatgttg
     4201 gcaattacac ctacgccata catatcttct gcattcggct cttctttatt tggatcttgc
     4261 tgagtgacta aaaacagttg tttattggaa tccatcgccg agcgtagggc ttgaattgat
     4321 ttttcacgtc ctacaaataa cggcataacc atataaggaa aaaccaccac atcacgcaat
     4381 gggagtagtg gtaattcaat cgctttcttt tttcttggtg ccataaattt gctctctcta
     4441 tcaaaatata atcccccatt atgagggcga atttgggaaa aacaagggaa aatttgattt
     4501 atcttaaaaa aactcgaata gtcaaaacag tagatgttgg cgatttaatc aattgttaaa
     4561 atcagggtaa ttagcttaat ttcccgcttg acatcaaatc gtaatgcgag caaaatcccc
     4621 tgcatatttt aatcttcagg gcagggtgaa attcccgatc ggcggtaaag tccgcgagcc
     4681 gagcaatcgg caggatttgg tgaaattcca aaaccgacag tatagtctgg atgaaagaag
     4741 agtcaaaaac cgcaaaaaat accgcacaag cggtcatttt ttgtgtcttt tttgcaagcc
     4801 ttgagtcgtg agatttcaag gcttcattgt tttgcaggcg gcgtttgcaa attttttact
     4861 aaaaacgacc gcttgtattg caataatcct ttcattacgc cctcaattta tcaaaatgta
     4921 tatgacagat gttcaatata tggcttatgc catcaccctt gccgaaaaag cacggggttg
     4981 gacaagccct aatccgctag ttggctgtgt gatcgtgaaa aacggcaaca ttatcgccga
     5041 agggtatcac caaaaagccg gtagttggca cgctgaacgc aatgcgattt taaactgcga
     5101 ggaagatctg acgggggcaa ccgcttatgt aaccttagag ccttgttgcc accacgggcg
     5161 aaccccgcct tgttccgaac tgctgattga acgtgggatc aaaaaagtgt ttatcggctc
     5221 tcgagatccg aacccacttg tttctggcaa aggagcggca cagcttagag ccgccggcat
     5281 tgaggttgtg gaagacttta tgcgaacgga gtgcgatgcg ctgaacccga ttttcttcca
     5341 ttacattcaa accaaacgcc cttatgtgtt gctgaaatat gggatgacgg cagatggtaa
     5401 aattgcgact tatacgggga attcgaaatg gatcaccggc gaggctgccc gagctaatgt
     5461 acagaaaagc cgccacgaat atagtgcgat tatggtcggg gtggaaacgg tgcttgccga
     5521 tgacccaatg ctcaacagcc gaatggaaaa tgctaaacag ccggtgcgga ttgtatgtga
     5581 cagccaactg cgtaccccat tggatagcca actagtccaa actgcacgcc aatatcgcac
     5641 cattattgct acgctcaata atgatgcaaa aaagcaggca gaatataccg cttgcggtgt
     5701 tgaaatttta gtgacaggcg aacgtgacaa gcgggtggat ttagccgatc ttttgcaaaa
     5761 gctgggcgaa ctcgggatcg acagcttatt gattgaaggt ggttcgcaac tcaatttcag
     5821 cgtgctggaa caggggttag tcaatcgagt acattgctat attgccccga aactgattgg
     5881 cggcaaagcg gcaaaaaccc cgattggtgg caaggggatt ggcgagttag cacaagcggt
     5941 taaattacgt ctaaaatcca ccgaattgct cggagaagat attttgttgg attatgaagt
     6001 ggacttgctt cgtaattaaa ttgaaatttc cttactctcg cccgtttacg ggagagagac
     6061 agcataaaat ttcgttcaga aattttatgc agagagaggg gaaaatgagt gtaatcttcc
     6121 ctctccctcc gaaaatccta cggattttct cttccctctc ccgtaaacgg gagaggggaa
     6181 tagtaagata agcagttctc agactaaatt ggaagtaaat cggagaaaaa tttaaatgtt
     6241 cacaggcatt atcgaagaag ttggccagat agcccaaatt aagaaacaag gcgagtttgt
     6301 ggtggtaacg gttaaagcaa aaaagattct gaccgatgta catttagggg atagcattgc
     6361 ggtaaatggc gtgtgtttaa ccgtgacttc atttacgcag gagcaattta ctgctgatgt
     6421 tatgtcagaa accttaaaac gtacatcact tggcgaatta agtatcaaca gctcggttaa
     6481 tcttgagcgg gcaatggcgg caaacgggcg ttttggtggg catattgtgt caggtcatat
     6541 tgatggcacg ggtgtggttg cagagattac accagcagat aattcaactt ggtatcgcat
     6601 taaagccgaa cctaagttaa tgcgttacat cattgaaaaa ggctcaatta ctattgatgg
     6661 cattagttta acggtggtgg atgttgatgc ggaatctttc cgggtatcga ttattccgca
     6721 taccattaag gaaaccgacc tcggtacgaa aaaaatcggt agtttggtga atttagaaaa
     6781 tgacattgtc ggcaaatata tcgaacagtt tttattgaaa aaagagcctg aaaatccgca
     6841 aagtaaaatt actgcggact ttcttaaaaa tgcagggttt taaccaaata aaggacaaat
     6901 aatgtttaag ttttcaacgg tagaagaagc aattcaagca attgcacaag ggaaaattat
     6961 tttagtcagc gatgatgccg accgtgaaaa tgaaggggac ttcatttgtg cagcggaatt
     7021 tgcgacaccg gaaaatatca actttatggc gaaatatggt aaagggttga tttgtacgcc
     7081 gatttcgaca gaaattgcca aaaaattaaa ttttcacccg atggtgctag agaacgaaga
     7141 taatcatcaa accgcattta ccgtttctgt tgaccatatt caaaccggca ccggtatttc
     7201 cgcttttgag cgttcattaa cttgcctgaa aatgcttgat gaaaatgcta agccggaaga
     7261 ttttagacgt ccggggcatg ttttcccatt agtggcaaaa gacggaggcg tattagtgcg
     7321 taacggtcat accgaagcaa ctgtggattt agctcgtttg gcgggcttga aaccggcagg
     7381 gctttgctgt gaaattatgg cagaagacgg cacgatgatg cagatgccgg aattacaggc
     7441 atttgcacaa gcacacaata tgccgtttat tactattcag cagttacaag agtatcgtag
     7501 aaaacacgac agcttggtga atgtggtttc ggtggtaaaa atgccgacca aatacggtga
     7561 gttcaaagca cacagtttcg ttgaaactat ttcaggcaaa gaacacgtcg ctttagttaa
     7621 aggtgatatt ggtgatggcg aaaatgtatt atgccgtatc cattccgaat gtttaaccgg
     7681 cgatgccttt ggctcacaac gttgcgattg tggtcagcag ttcgcagcgg caatgaacca
     7741 agtggagcaa gagggcagag gcgtggtgct ttatttacgc caagaaggac gtggcatcgg
     7801 tttaattaat aaactgcgtg cttacgaatt gcaagataga ggaatggaca cggttgaagc
     7861 caacctggca ttaggtttca aagatgatga gcgtgaatat tatatcgccg ctcaaatgtt
     7921 tgaaaaatta ggcgtaaaat cgattcgttt gttaaccaat aatccggcaa aaattgaagg
     7981 actcattgag caaggtttaa acgtagtggc tcgtgagccg attatggttg agccaaacga
     8041 acacgatttg gaatacctta aagttaaaca gcacaaaatg cgacatatgt ttaatttcta
     8101 atccaatact ctctcccctt gtgggagaga gacagaaaaa tacttcgttc agaagtattt
     8161 ttcagagaga gggtatattt tttagaaaaa gtttgcaatt tcccctctcc ctgatttttc
     8221 ttctgaacga agaaaaatct atccctctcc cacaagggga gagggttatt gagtatcaaa
     8281 tttattttaa agaaggaaaa caaacaatgg caacatttca aggaaactac atcgcaactg
     8341 gtttaaaatt cggtattgtg gcaactaact ggcacaagat ttttatcgat caactgttaa
     8401 acggtgcaac cgataaatta ttgcgtcacg gcgtagaaga aaaaaatatc gacaccgtat
     8461 gggtgccggg tgcattagaa atctcaattg cagcgaaaaa aatggcacaa agcggtcgtt
     8521 atgatgcgat tatctgctta ggtgcggtcg tgcgtggagc aaccagccac tatgatgtgg
     8581 tagtgaacga gtcagcaaaa ggcatcagct cttctgcttt agaaaccggc gtgccgatta
     8641 ttaacggtat tttaacggtg gaaaatttag agcaagcgat tgagcgttca ggcactaaag
     8701 ccggtaataa aggcgaagag tgtgcaatgg tagcgattga aatggcgaac ctattaaaag
     8761 ccttagcgta atcagcgata aaatcccctt agacccaaga gcctaagggg atttttttat
     8821 tttctgcgta gtaacaggct ggcaatgaca caaaataggc tgaaactgta aattaaccag
     8881 tgacctaatt gtttaaacgg cgtatcgcct ttggttggca caatggtggc agttagtgca
     8941 tcagcagtaa attgcggtag ttgttcaatt acttttccgt tggcatcaac aatggcggta
     9001 ataccggtat tcgcagctcg aagcaatggt ttgccaagtt ctaacgctcg cattcttgcc
     9061 atttggaaat gttgccaagg cccgatggaa gaaccaaacc acgcatcatt ggtgatagtt
     9121 aataaataat ctgaattttg gcttttttgg ttttgttgta actgatcacc aaaaataatt
     9181 tcatagcaaa tcgccatatt aaatcggttg tttttcgcca agaatgatgg ttgaacgaaa
     9241 ctgccttgtg aaagattaat tggtagaata aacacttccc gcatccaatc cagcaccgag
     9301 ccaaacggca catattcgcc aaacggcaca aggtgatgtt tgttgtagcg agggttgctg
     9361 tgcagggcat attccctctc tttttcgcct aatagcacgc tactgttaaa cagttcctct
     9421 tgctcatttt gatagagtgt gccgataata atttcacttc cgtgttggcg agctaagtga
     9481 tcgagcgagc caagcagcgg gctgatttga ttttcaagtg ccggaatggc ggattcaggc
     9541 aaaataatca gttcactgtt acctaatagg ggcagaatga gctgttcgta ggttcgtacg
     9601 ctgtggttga aatgttgcgg atcccacttc attttttgct caatattccc ttgtactaaa
     9661 ctcactacaa gcggttgttt ttctgtatca atttgcacaa attggagaaa gcgagtggca
     9721 aaacttaagc caaaaatgac cgctagtacc atcaatgatg gcacagtttt gttctcttgc
     9781 tgaataattt tcactagata gctacttgca actattacca agaaagtcaa accttcaacg
     9841 cccaaaatcg gcgcaatacc agcaaagggg ctgtctatta agctatagcc gaattgtagc
     9901 cacggaaaac cggtaaatac cacgcctcgt aaatattcgg taaaggtaaa aatcgcagcc
     9961 aatgcaaacg gattattcag tttgagcctg tgtgaaacta cactaaacag cagattataa
    10021 atagcgagat agcacgccaa caggaatact gctatgtagc ttactatggt aggaacacca
    10081 ccaaattggg tcatactcac agaaacccag tttacaccgg tgcagaagta gccgatagac
    10141 caagcaaagg ttgcccataa tgcggttttt ctgtttgcca gagtggctga ccaaaccaag
    10201 ccggctgcgg aagcaaaggc aagaatccaa atatcaaaag gcgaataggc gaaagtgccg
    10261 attgcaccca gtatgattgc aaggagacaa gcggttaaaa aaggcggatt ttttgcaaaa
    10321 ttcataataa ctcactaaat aaatgaggca cgccgaaacg tgccttgatt gaaactcact
    10381 atattattct tcttcgttag gagaggtttt ttccattttc tctaactgtt catcggaaag
    10441 tgtgactcgt agctgaatca attggcggct attagctgag gtgactttaa aatcaattcc
    10501 gtttaactca atttgctcat ctcgtttcgg gaaataaccg aaagcctgca tcactaaacc
    10561 accaatggta tccacctctt cgtcattaaa gtcggtagca aaaaattcat tgaatttttt
    10621 gatgtcggtg agcggtaata ccgcataagt atgtcttgaa agctggcgaa ttggtttgac
    10681 ctcttcttca tcaaactcat cttcaatatc acccacaatt tgttcaagaa tgtcttcaat
    10741 ggtgactaag cctgaaaccg caccaaattc atcaaccact actgccatat ggaagcgttc
    10801 tgaacggaac tcttttagca ttcggtctag gcgtttgctt tccggtacaa taaccgcagg
    10861 gcgtaatacc tgttgcagat taaagggttc agagtcagaa cgtaaatatt tcaataaatc
    10921 tttagagtga agaatacctt cgatagtatc tttctcaccc cgaatcaccg gaaaacgaga
    10981 gtgtgcggat tcaataatta aatcaataca gacatctaaa ggttcattgg catcaataaa
    11041 cacaatttgc gcacggggaa tcataatatc ccgcactcgt aattccgaga tttccattac
    11101 tccttcgatc atctctttgg tgtcgctgtc gatcaattca ttttcaacag agtctcgaat
    11161 cacttcgact agatcttcac ggtttttagg ctcgttttga aaaagcccgc taaatagaga
    11221 gtgtaaaatc gatttttttt ctgatttttc ggtggtgttt acactttgct gttcatcact
    11281 catagtttgt tccacttaaa taaagtacgc ttataataag caaattcagt cacaaagcaa
    11341 ataaaacatt gctattttca ctcaaattag cataggataa gcaaaaatct ttttatttct
    11401 tcatatttta ggagtttgaa atgaaattaa ccaaaatagc attaagttta acagccttag
    11461 ttgtcagttc gatgagtgtg gccgggacgt taagtacatc atcaatggtg gacattttag
    11521 cctttgacgg gcaacgtgtt aaatccggca cgacttcggt tcaaatgagt gagaataaaa
    11581 cgcatcaagt ggtagtggaa gtcggtggga cagttgaagg ggattttttc acctctgatc
    11641 aaatcatttt gactttccaa ggcagtgcgg aaaatgcaaa attagaaacg ccaagattaa
    11701 attcaaagtt agatcttcgt aaattccaag agaatcagac tgtggcaatt aaaaccgatt
    11761 caggtaaggt tatttcacat aaacaagatt tcttaaaagg ggaaggtttc cttgcgaaaa
    11821 caagagttga agataattta acgaaatata acttagcgaa aaaaacagct tcagttgaac
    11881 agtttgcgac ggcacctctt gaagcaaaag gacaaattgt ggtggataca aataaagttt
    11941 cacaagaaga attacagctt ttatttagaa aggcagataa agacacccaa aaacgtttct
    12001 tagaatgggc gaagaaaaat ataaaataaa cctatatcaa ttaataagcg gtcatttctc
    12061 gccaattttt tgcaaggtgt taaaaaaatg accgctcata caatgagatt taccagcaat
    12121 aatagcagta acgccagcct ctatacatat agtctctatc gtaattccaa cgaatttctt
    12181 caagttctac ttgtgccttg taattttgcc aagcaagctt ataacaggct tggaacattg
    12241 gggcattgac tttttcggca tagcgtttct taaatgcttt ctcttcttgt tcggtttggc
    12301 taagcggcgg attaaattgt tggtacatta actccgccgt ttctacatca cattgtttgg
    12361 cgagctgaac ttgcaaatct tgttctgccc gaatttgctt cgctttacgt tcagcttgtt
    12421 gctctggagt taaagtacag ctacttaaca taagtgcgag tgaaaaaatg cagcctaatt
    12481 tgagtgtttt cattgctgaa tcctctagtt gaaattggtg atttattcta ccgcttctaa
    12541 ctcactttct tcaagttcat cagccatagc actaagggca tcacggctaa gttgtgcgag
    12601 ggctttataa aaaccattgt cgaaagcttc tatttttcct aagaatttgc ctgcacaagg
    12661 tagtaaaaat tgttcgaata atattttttg agctaaggca gaatcgagat tatcttcgat
    12721 ccaagatgcc gtgagaaata gtaacccaat gtgatcggca ttttctaatt caggcattgc
    12781 ccgctcttgt ctaaaagcta caaaattatt aactgataat ccataggctg aaattgttgg
    12841 agaaatagcc ccattttcag caaaaagcgc ttgatagctt gctgctaatt gcgtagggtt
    12901 agcattcttt tgtaagagag tcagcgcatt ttcactttgg ctatccgtat ttaatgccca
    12961 gacttggcgt aatcctcctt gggcaagcca gttaaatgtg ccagctaaaa tagggtcggt
    13021 agggtgacga taaaataagt tgccaaacaa acggcaaagc agggaaaaat cgttaatggt
    13081 agtttcgttc ataatttgaa atagatagaa aaaagaattg ttagtatagc agaacacaag
    13141 agaggactga atgaaatata taggcgcaca cgttagtgct tcaggtgggg tggaaaatgc
    13201 agttttgcgt tccgtagaaa ttggtgctaa tgcatttgcg ttatttacta agaatcaacg
    13261 tcaatggcag gcaccggcat taaaagccga aactatcgaa aaatttaagc gtttttgtaa
    13321 agtgcatcat ttttcagcag agcaaatctt accacacgat agctatttga ttaatttagg
    13381 aaatccggaa gcggaggcat tggagaaatc tcgtgtagca tttattgatg agatgtctcg
    13441 agcaaatcaa ttaggtttaa aattgttgaa ttttcacccg ggggcgcatt taaagcaaat
    13501 ttccgagcaa gattgtttgg ctagaattgc agaatcgatc aatattgcag ttgaaaaagt
    13561 accgaatgtt attgccgtga ttgaaaatac ggcaggacag ggttctaatt taggttggca
    13621 tttcgatcat ttggcaacta ttattgagca agttgaggat aaaagccgag tgggggtgtg
    13681 tttagatact tgtcacttat tttctgccgg ctatgatatt agttcttatg aaaagagcga
    13741 ggcagtattt aatgatttta accaaacggt tggttttcat tatttaaggg gaatgcactt
    13801 aaatggttca aaaacaccat taggcagcag agtggatcgt catcatacct taagagaagg
    13861 cacaatagga accgaagtgt ttgcatttat tatgcaaaat atgcatttta accatattcc
    13921 tatgatttta gagacaattt cgcctgaaat ttgggcagat gaaataaaat ttctacgcac
    13981 attggaacta aaataggtta tactggtctg agtagtgggt ctagcagagt ctagacctta
    14041 ttttgttatc ttttttaatc ttttagaaga tttagttaag gaatttaccg ctgtaattgt
    14101 tctggcgaga cgagacataa attatgaaaa aaaatctttt tgcaacaacc ttcaagcccg
    14161 tatttattgc ttctattttg tctgtttttg gagggtattc ttccattgct gtagcaagtt
    14221 taagttctaa accggccaca ccaaatcaaa tcattgcaag taaagcagaa agattagcta
    14281 agtcttcttc agtatttacc aatcgagcaa atcttccaac ttcttccgct catacagcga
    14341 attatagtgg tcgtattaat agtgtttatc ataattgggt agggacacgc tatcgtttag
    14401 gcggcacaac aaaagcagga attgattgtt ccgcctttgt gcgtgaagta atgggcaaag
    14461 catttagtaa agatatgcct cgttcaactg cagaacaacg ccatgtcggg cattccattt
    14521 caaaatctga tttacgccca ggtgatttag tctttttccg taagaataac catgtagggg
    14581 tttatattgg taatggtaaa tttgtacacg ctagttcaag tagaggggta accaccagct
    14641 cattgtcaga aagctactgg tcaagaaact acacacaatc tcgccgtgta atttaataaa
    14701 ttacaattcc aagatgaaaa gaacactcac ttttgcgagt gttctttttt aattaaaaaa
    14761 gtttatgcta cgcgttgctt agcttgtgta aatgctccac gagtacgcat ttgatgaacc
    14821 acattagtaa ttacacctgc tatttttact tcagcccaat cagtaattct aagatttgat
    14881 tcgctcacat ctaatgaaaa taaaattttt tcagcaatac cttccccatt ctgaatttca
    14941 ttaaagaatt gatagaattt atattcccca tctttttcaa gcaccaatag atcattaact
    15001 aaatattggt tggtctgttc tacaatcaat aaatcgtcta gttcaattcc ccacgcgatt
    15061 aaatttgggt ttttcacgtg gataaaaaaa gtgtctcttg ggcgtttgat acaaagtgag
    15121 ttaagatcga gctttacaga gcggctgcta ttgaaatccc gataaagcgg aatcggctga
    15181 taagctgccg tttgatctga aatttgtcta attgaagcca tagtaaaatc ctctatctgt
    15241 ttttttatac agggtatttt actggctaaa ataccagtgt caaccattat tttggaattt
    15301 tttgtaaatt taaccagtgt tttgaccgct tgttatcctt taaaaagcaa taaaaaagca
    15361 cccatagggt gcttcttatg cttaaaagct gttattatag gctttcagtg aatgtacgag
    15421 taataacatc gcgttgttgc tcaggggtta atgagttgaa acgaactgca taacctgaaa
    15481 cacggatcgt taattgagga tatttctcag ggttttgaat cgcatcttct aatgtttcac
    15541 ggcgtaaaac gtttacgttt aagtgctgac caccttcaac tttaatcgtt ggtgcaacat
    15601 taacgggtac ttcacggtat gcgatatcac ctaattcgct gatagcaaca acttgatctt
    15661 cttcaaatcc tgcttttgca gctaaacaac gagcttcatt tttagcttcg tctaataacc
    15721 agaaagagtt taataagttg ctgtttgatg attctgtgat ttgtacacct ttaatca
//
LOCUS       DANLXK010000057        15749 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.057, whole genome shotgun sequence.
ACCESSION   DANLXK010000057 DANLXK010000000
VERSION     DANLXK010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15749
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..1693)
                     /gene="recJ"
                     /locus_tag="PXD88_001448"
     CDS             complement(<1..1693)
                     /gene="recJ"
                     /locus_tag="PXD88_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL6281023.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQ"
     gene            complement(1778..2461)
                     /gene="dsbC"
                     /locus_tag="PXD88_001449"
     CDS             complement(1778..2461)
                     /gene="dsbC"
                     /locus_tag="PXD88_001449"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL6281024.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            complement(2471..4000)
                     /gene="mepM"
                     /locus_tag="PXD88_001450"
     CDS             complement(2471..4000)
                     /gene="mepM"
                     /locus_tag="PXD88_001450"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL6281025.1"
                     /translation="MQHVILARDRKRHKKHFKIAVFLLAVFSLFVDIVLALKDQSSIN
                     NTSSQEDIIAIDKQEKYQSINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDE
                     IVDDQTATSYEDELVGQDDEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRI
                     QNQFSYTVARGDKLKDVLEQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELE
                     YMNWLVSEKEERVYERKENGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDR
                     QINQLAVGLQSQIATNKLKKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAI
                     QADNGRYYSRYGETLSGGFARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPI
                     GTPIIAPSDGVVEHVAYQARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIA
                     LSGNTGGSTGPHLHYEFHINGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLK
                     M"
     gene            4225..4971
                     /gene="znuC"
                     /locus_tag="PXD88_001451"
     CDS             4225..4971
                     /gene="znuC"
                     /locus_tag="PXD88_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HDL6281026.1"
                     /translation="MVSLENIEVSFNGQKALQNINLSIYPNSITTIVGPNGGGKSTLL
                     KILLKLLSPNKGKVIHQKGLKIGYVPQKLHLEPSMPITVYRFLALKPHTTKEMINQAL
                     DLFSITHLTENSMQKLSGGELQRVLLARAILDRPQLLVLDEPMQGVDIIGQTELYQLL
                     NKTRDLLNCAILMVSHDLNIVMANTDEVLCINKHICCAGSPEVITHDPSFIHFFGDQF
                     ARNVAFYSHKHNHHHNLHGDICLGECSCEH"
     gene            5136..7949
                     /gene="sucA"
                     /locus_tag="PXD88_001452"
     CDS             5136..7949
                     /gene="sucA"
                     /locus_tag="PXD88_001452"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL6281027.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            8052..9281
                     /gene="odhB"
                     /locus_tag="PXD88_001453"
     CDS             8052..9281
                     /gene="odhB"
                     /locus_tag="PXD88_001453"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL6281028.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            9574..10734
                     /gene="sucC"
                     /locus_tag="PXD88_001454"
     CDS             9574..10734
                     /gene="sucC"
                     /locus_tag="PXD88_001454"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL6281029.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            10743..11612
                     /gene="sucD"
                     /locus_tag="PXD88_001455"
     CDS             10743..11612
                     /gene="sucD"
                     /locus_tag="PXD88_001455"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL6281030.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(11683..13128)
                     /locus_tag="PXD88_001456"
     CDS             complement(11683..13128)
                     /locus_tag="PXD88_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL6281031.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
     gene            complement(13233..14219)
                     /locus_tag="PXD88_001457"
     CDS             complement(13233..14219)
                     /locus_tag="PXD88_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL6281032.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSFIDAGTGVFFKR"
     gene            complement(14210..14848)
                     /locus_tag="PXD88_001458"
     CDS             complement(14210..14848)
                     /locus_tag="PXD88_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL6281033.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            complement(14909..15287)
                     /gene="rnpB"
                     /locus_tag="PXD88_001459"
     ncRNA           complement(14909..15287)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXD88_001459"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
BASE COUNT         4833 a         3405 c         2950 g         4561 t
ORIGIN      
        1 attgcaaaga tttctctcct cgaaattcat taatatccaa cctataaact aatcttgcct
       61 ttttgatcga taagtcagga aacgccctta catccacatt aaaccaaatt gcatcaaata
      121 gttgcccttt ctctgattgc aacattaatt ttaaatgttt acctgcgagt aatttttgtt
      181 ggagaatgct aaactcccct tcaaaactag gttctggaaa atgttgtccc caaggcccac
      241 cttgcctaat catctcggca ttggctaaag taaactctag tgcatttaac tcaccatcgg
      301 tataaatgat gccttgtaat tgctcaggct cgataattgc attaatagat tggtcaaata
      361 tctgtttaaa taaatctaat tttgattgat ggatagtcaa accagccgcc attgcgtgtc
      421 caccaaattt ttcaatcaag tctggatgtc gcatatcgat atgttccagt aaatctcgca
      481 tatgtactcc gttgatcgag cgagcagaac cttttagata ttcactttcc tcactttctt
      541 gtgcaaaagc aatgacagga cggttaaatt gatctttaat gcgagaagct aagatcccaa
      601 ttacaccttg gtgccaatct gcttgatata acactattcc gtgtgcctgt tcagactgcg
      661 caagacttgg caaattcgca caaatcgaca gtgcttctgc tttcatttct tgttcaaact
      721 cttttcgggt ttgattaaga gaatcaagat caagcgcaag ccggcgagct aattccatat
      781 tttcacaaat tagtaactca acccctaaag acatattttc taaccgacca gctgcattca
      841 aacgtggtgc gatagcaaaa cccaaatctg ctgcttgcaa agtagaaaga tctcgcttgc
      901 ccacctccgc taaagctttt atccctaaac ggcaatgccc tgaacggatt cgctgtaacc
      961 cttgatgcac caatatccga ttattttgat ctaacggcac tacatcagcc actgtgccta
     1021 aagcgactaa atccagtaat tcagcaaaat ttggctctgg tttattttca aataaatgtt
     1081 gttctctcat acgagaacgc aatgccatca ttacatagaa gatcacgcct accccggcta
     1141 aagatttaga cggaaattca caaaaagcta aattggggtt taccagtgca tctgcattgg
     1201 gtaggctctc tggcggtaaa tgatgatcgg taaccaaaac ttgaatctga tggcttttta
     1261 gcagagcaat gccttcagtc gaagaaattc cattatctac cgttaagact aaatccgccc
     1321 cttttgctaa taccatttca gcaaccgcta cactcaatcc gtacccctga gaaaaacgat
     1381 ccggaattaa ataatctacc ttatcgaaac ccaattggcg taacgcaata agggcaagcg
     1441 atgtactggt tgcaccatct gcatcaaaat cacccacaat aatgatccgg cttttttcac
     1501 gaaaggcttg taatagcaag tcaacggctt gctcaatatt ggcaagttgc tgtggtctat
     1561 gcaaattctt taaattatgc tctagttctt gcgtattctt tatgcctcga ctttgataga
     1621 ttcgatttaa taacgggttt gtagagacta tttccgttgt taataatggg cgccttttaa
     1681 ttattttttc cacaatactc ttctttaatg aaacaacaag cggtcttctt ttgcaaaaat
     1741 tttacaaaaa aagaccgctt gtattcaagt taatgaatta ctcacttaac attttcgcta
     1801 attctttagg ctctacataa ccaccaatca actcaccttc tgaagttacc atatttgggg
     1861 tacctgtcac accaaattta atccctaatt ggtaatgttt tttcacaata tccggcgttt
     1921 ttatttgggt tggtaattta ccatcttcag catcattcag tgcttttact ttgtctgctg
     1981 atgtccaaat agcttccatt tgttttgctg tttgggtatt cattccacca cgcgggaatg
     2041 ccaaatagcg aatggtaata cctaaatcat tatattcttt gattttagta tgtagtaaat
     2101 ggcaataatg gcaagtaata tccataaaca ccgtaatcac atgtttctca tttttcgctg
     2161 gatatacgat catttcatta gtgtatgaat tcaattctgc caacaatcct tgattagtaa
     2221 tatcaatcgc tttaccattt tttagctcaa atactttacc ttgaattaca taacgaccgt
     2281 cttggctgat atatacaaca ccttcatttg aagtcgccat tttaaagcct gttaatggag
     2341 aatctgaaat tttaacatct gtggctccaa ttttttcaag ctggcttttt agttttgcat
     2401 ctgaagcaaa cgtgatggtt gataaacaca ttaatcctaa agtgattaga ttttttttca
     2461 ttgagaatcc ttacattttt aatctacttt ctacattctt cgctttattt aagaatgctt
     2521 gacgttcttt attacccata cctgaatttg agccaggcaa ttttaccgta atcgggttga
     2581 ccggtcgacc attaatatgg aattcatagt gtaaatgagg cccggttgaa ccgcctgtat
     2641 tacccgataa tgctatccgc tccccttttt taacactctg ccctggtttt accaacgttt
     2701 tgctgaggtg catataaaca gtcgtaatat gtccgtgttt tatccgaata taacgtcctg
     2761 ctccacgggc ttgatatgcc acatgctcta cgacaccatc acttggtgcg atgatcggag
     2821 tacctattgg cacgccatag tcaacccctt tatgcggact aattctccct gtaatagggt
     2881 gtctgcgttt ggggttgaaa gaagaagtta ctcttgctgc aaataataat ggatgacgag
     2941 caaatcctcc acttaatgtt tcaccatatc gactataata gcgtccatta tctgcttgaa
     3001 tagcataata acttttttta ctgctaatta catggattcc ttccacattt cctaaatccg
     3061 ttactttgcc gtcaatatat tcccgcttaa tcagaattgc aaacctatcc ccttttttta
     3121 atttattcgt cgcaatttgt gactgcaatc caaccgctag ctggttaatt tggcggtctg
     3181 ataagccaac ggcttttaag ctaaccgcaa aactattctg aatagttcct cttacaacat
     3241 ctaacttcca ttcccctttt ttctcaaatc tttgaaaaga aaatttacca ttttcttttc
     3301 gctcataaac ccgttcctct ttttcggaaa ccagccagtt catatattct aattcaccgt
     3361 cattatctaa tacccaataa aattgttgac ccggttctaa ttgtgctaat gccgaatgtt
     3421 gcttaattaa atttttcgca acggatgcag ttaagcctga ttgctctaat acatctttaa
     3481 gtttatcacc tcgagctacg gtataactga attggttttg aattcgtagt gcttgatcag
     3541 ccacatcaag taaatcttct aatgcctttt cagcttcttc tgggagtttt tccccaggaa
     3601 cttgattttc aaccgtttca atcccttctt ctacttcatc gtcttgccca actaattcat
     3661 cttcataaga agtcgctgtt tgatcatcaa caatttcgtc gtcatgttcg attactaatg
     3721 ccgactgagt cagtaaatca gtcacataat taataaaact ggaatgttgc tcctgatgga
     3781 gagtattatt ttccgccaaa ttagtgttga tactctgata tttttcctgt ttatcaatgg
     3841 caataatatc ttcctgtgaa gatgtattat tgattgagga ttgatctttt agtgcgagaa
     3901 caatatcaac aaatagacta aataccgcta ataagaaaac cgcaatctta aaatgttttt
     3961 tatgtcgctt acgatctctc gctaaaatta catgttgcaa aatatatccc gctattttta
     4021 aaatttacta aaatttacat atttttctga gtagactatt ttaccaagaa aaaattcatt
     4081 taatctattg tcacaacacg aaaaatcagc taattttaac tcaatacccc taattttttt
     4141 atatcaatga aaatccatca tcttaaaccg aatctaaata ccactacatt tgaactattc
     4201 aaacagaatt tatccgcgac atcactggtt tctcttgaga atattgaagt gtctttcaat
     4261 ggacaaaaag cattacaaaa tattaattta tctatttatc ctaactctat cacgacgata
     4321 gtcgggccaa atggtggagg aaaatctacc ctgcttaaaa ttttgctaaa attacttagc
     4381 ccaaataaag gaaaggttat tcatcaaaaa ggactcaaaa ttggctatgt accacaaaaa
     4441 ttgcatttag aaccctcgat gcccattact gtttatcgat ttcttgcgct aaaaccacat
     4501 actaccaaag aaatgattaa ccaagcacta gatctgtttt ctattaccca tctcactgaa
     4561 aatagtatgc aaaaattatc gggtggtgaa cttcaacgtg tattgctggc tcgggcaatt
     4621 ttagatcgtc cgcaactctt agtgttagat gaaccaatgc aaggcgttga tattataggc
     4681 caaaccgaac tctatcaatt acttaataaa acaagggatc tccttaactg tgctatttta
     4741 atggtctcac acgacttaaa tattgtgatg gcgaatacag atgaagtgct ttgcatcaat
     4801 aaacatattt gttgtgccgg aagccccgaa gtcattacac acgatccgag ctttatccat
     4861 ttttttggcg accaatttgc acgtaatgtt gcattttatt cacataaaca taaccatcac
     4921 cataatttac atggcgatat ctgccttggt gaatgtagtt gtgagcactg ataggcgtcc
     4981 tttttaccaa atgtttaaaa tttgtaaaaa taatgctaaa aataaccgct tgcagcacaa
     5041 gatttatcta aaaatcagac ttacttcaca ttttatttgc ttaaattgga gtataataag
     5101 ggcgtgattt cataccacaa acaggtcagg tctttatgca atatacacat tttgatgatt
     5161 ggcttgcatc atctgcatta ggcggtgcaa accaatctta tatagaagaa atttatgaac
     5221 agtatctaga aaatccagca aatgttgatg aaagctggag aaacatcttt gattcatttc
     5281 ctaaaactcc ccaagttgaa caagctcaca cccctattcg tgactatttc cgtaaattag
     5341 cccgtgaaca gcaacctcaa tccgtcacta ttattgaccc agaagcaggg gcgaaacaag
     5401 ttcgcttact gcaatggatt aacgctcacc gtttccgtgg ctatttagag gcaaaactag
     5461 acccaattaa ctattaccgt tggaaaacct ccagcgtgcc tgaattggac tacaaatatc
     5521 acggcttcac cgatgaagat ctcaacgaaa cttttacggt cggtcgctat gtctatgata
     5581 aagacacaat gaagctcagc gaactggata aagccctaaa agaaacttat ttagggccta
     5641 ttggtttaga atttatgcac gttcaagata ttgaacaacg caactggctt caagccaaaa
     5701 tggaaagcgt gctaaacaaa ccgctgttca ccaaagcaga aaaactgaat ttattaagcg
     5761 aattgaccgc tgccgatggt ttagagcgtt acttaggggc aaaattcccg ggggcaaaac
     5821 ggttctcatt ggaaggtagt gatgccttta ttccgatgat gaaagaaatt atccgccacg
     5881 cttcccgtca aggtatgacc gatgtggttt taggtatggc acaccgtggt cgtttgaata
     5941 tgttagtgaa cgtatttggt aaacgcccgg cagaattgtt tgatgaattt gccggcaaac
     6001 acgctgatga aagccgcacg ggcgatgtga aataccacca aggtttctcc tcaaactttg
     6061 ccgtagatga taaaaacgtt caccttaccc ttgctttcaa cccatcgcat ttagagattg
     6121 ttagcccggt ggtaatcggc tcagtgcgtg caagacaaga acgtatgcgt gatatcgaac
     6181 acgaaaaggt gcttgcggtg accgttcacg gtgactctgc agtggcaggg caaggtgtag
     6241 tgcaagaaac cttaaatatg gcaaatgttc gtggctataa agtaggaggc actatccgta
     6301 ttgtgatcaa caaccaaatc ggatttacca cctctaaccc aaatgacacc cgctccaccg
     6361 aattttgtac cgacattgcc aaaatgattc aggcaccgat tattcacgtt aatggtgatg
     6421 atccggaagc tgttgccttt gcagcgagaa tggctgtgga atatcgtact aaatttaaac
     6481 gtgatatttt tattgattta atctcttacc gtcgtcacgg tcataatgaa gccgatgagc
     6541 ctttagcaac tcagccaatg atgtatagca tcatcaaaaa acacccgaca cctcgcaaag
     6601 tctatgcgga tcgtttaatt accgaaggtg ttttaaccaa cgagcaagaa atcgagatgt
     6661 taaacctgta tcgtgatgcc ttagacaacg gcgaatgcgt tgtgccggaa tggcgtgaaa
     6721 tggatatggc agcggtcgat tggctacaat atctcaatta cgactggact gccctatacg
     6781 aaagtaaatt ccctgaagaa cgattcttaa ccattgccaa acgggtgtgc gaatatccgg
     6841 cttcgcttaa agctcattct cgggttgaaa agatctacac tgatcgcaaa gagatgtatg
     6901 aaggcaagaa attattcgac tggggtatgg ctgaaacaat ggcatacgct actttgttag
     6961 acgaaggcac acatgttcgc ctttcaggag aagatgccgg acgtggcact ttcttccatc
     7021 gccatgcggt aatccataac caaaatgatg gaacaggcta tgtgccactt actcaactgc
     7081 acgccaatca agggcgtttc caagtatggg attccgtact ctctgaagaa gcggtactcg
     7141 cctttgaata tggctttgcc actaccgacc cgaaaacact gaccatttgg gaagctcaat
     7201 ttggagattt cgctaacgga gctcaaattg ttatcgacca atttatcagc tcaggcgaac
     7261 aaaaatgggg cagaatgtgc ggtttagtga tgttattacc acacggctat gaaggtcaag
     7321 ggccggaaca ctcctctgcc cgagtggaac gctatttaca gctttgtgct cagcaaaata
     7381 ttcaagtttg cgtgccatca acaccggcac aggtttacca tatgttacgc cgtcaagcga
     7441 tccgcaaaat gcgtcgccca ttggttgcaa tcacaccaaa atcattgcta cgccacccac
     7501 ttgcggtgtc atctcttgat gaattgatta acggttcatt ccaaaatgtg attggcgagc
     7561 tcgataatat cgatcctaaa caagtcaaac gtgtggtgat gtgttcgggt aaagtgtact
     7621 acgacttaat tgaaaaacgc cgtgaaaata accaaacgga cgttgccatt attcgtatcg
     7681 aacagctcta cccgttccca cttgaagaaa tgcaacaaat tctcgagcct tacgctcacg
     7741 ttaaagactt tgtctggtgt caagaagagc cactaaacca aggtgcgtgg tattgcagca
     7801 agcacaattt tgaggcttct ctgccggaag atgcaaaatt aacttacgca ggcagaccgg
     7861 cttctgcttc accggcggtg ggttatccat cgttacacgc aaaacaacaa aaacaacttg
     7921 ttgaagatgc tttaacgatc gctgaataat aaaatgggcg tatatacgcc ctacaagcgg
     7981 ttcactttta accaaatttt acaatttacg ctgtcggagt tttaaaactc tctcgaaaaa
     8041 aggaataagt tatgaccatt gaaattttaa cccccgattt acccgaatct gttgccgatg
     8101 cgaccgttgc cacttggcat aaaaaagtgg gcgacaatgt aaaacgtgat gaaattttag
     8161 tcgaaattga aacagacaaa gtcgttttag aagtaccggc ttcaagcgat ggtattcttg
     8221 cagaaattac ccaagaacaa ggtgctactg ttgtatccaa gcaatctctg ggtaaattag
     8281 tagtagctaa agccggtgat attagctctg caactattga gcaaaaaaca gaatccacgc
     8341 catcagaccg caaacacgca gcaattgaaa acagccacgc gaacgctgat gatcaagggc
     8401 ctgcgattcg ccgtttatta gccgaacacg acttacaagc cgctgatatt caaggcagtg
     8461 gtgtaggcgg cagaatcacc cgcgaagata ttgaaaaaga gattgccaaa cgagtgcaaa
     8521 tcaaccaagt aaaagggtct gcaaccagcc aaaacaccgt tagcactgta gcatttaaca
     8581 gccgtagcga aaaacgtgtg ccgatgacac gactccgcaa acgtattgcc gaacgcttac
     8641 tagaggcaaa aaacaccact gcaatgctca ctacttttaa cgagctggat atgcaaccaa
     8701 ttatgaattt acgcaaaacc tatggcgaaa aattcgaaaa acaacacggt gtgcgtttag
     8761 gctttatgtc gttctacatt aaagccgtgg ttgaagcatt aaaacgctac cctgaaatca
     8821 atgcctccat tgatggcgat gatgtggttt atcataacta tttcgacatc agcattgcgg
     8881 tttctacccc acgaggctta gtcacacctg tgttgcgtga ttgcgacaaa atgagtatgg
     8941 cagatattga gaagaaaatt aaagaacttg ccgaaaaagg gcgtgacggc aaattaaccg
     9001 ttgaagactt aaccggcggt aactttacca tcaccaacgg cggggtattc ggttcattaa
     9061 tgtccacccc aattatcaac ccgccacaaa gtgcgatttt gggtatgcac gctattaaag
     9121 accgccctgt cgccattgac ggacaagtag tgatccgccc gatgatgtac ctagccttaa
     9181 gctatgacca ccgtttaatt gacggtaaag aatctgtcgg tttcttagtg gcagttaaag
     9241 agttattaga agacccaacc cgtcttcttt tggaaattta atcgaaaata tgaccgcttg
     9301 tacttttagc tacaagcggt ctgtttttaa taaaatttga caaaatccga taaacgctct
     9361 atttgagttc ccttctgagc cacctgagcg actttgaatt tgtaggaaaa atttagtgtt
     9421 tgagcttaca aggcaagcga gttataaatt tttccgtcaa gcaaattcaa actaagcgaa
     9481 gaaagtggcg aagcagggtg tgctttcttt tggttacttt tctttgcaca agcaaagaaa
     9541 agtaacataa aaaaaaccaa acgaggaaac tctatgaatc tacacgaata tcaagcaaaa
     9601 caaatattca aacaatacgg gcttcccgta agccaaggga ttgcttgcaa aacggcagag
     9661 gaagccgttg aggcaattaa acaactacaa ggtgaacaat gggcgataaa gtgccaagtt
     9721 cacgctggtg ggcgtggcaa agccggcggg gtgaaactgg ttcgcaatga agccgaagtg
     9781 cgtgaatttg ccgataaatg gctcggcaaa cgcttagtta ccttccaaac cgatgctaat
     9841 gggcaaccgg ttaatacctt atatttagaa gaaacctgca atatcgaccg tgaattgtac
     9901 ttaggtgcag tggttgatcg ctccgctcaa aaagtgattt ttatggcatc aagtgccggt
     9961 ggtatgaata ttgaagaagt agcggagaaa acccctgaat taattcacaa agcggtaatt
    10021 gacccactca ccggtgggca gggttatcaa gggcgtgaat tagcatttaa attaggcttg
    10081 aaaggtgatg aagttaaaca atttgcggat attttcgtga aactggctaa cctatttgtt
    10141 gaaaaagatt tagctttatt agaggtaaat ccacttgtca tcactaaaga agggcaacta
    10201 ctctgcttag atgcaaaaat gtcgattgac agcaatgctc tctaccgcca cccagaactt
    10261 aaagagttgc aagacccatc gcaagatgac gaacgtgaag ctgaagcgga aaaatggaat
    10321 ctcaactacg ttgcactaga tggcaatatc ggctgtatgg taaacggtgc ggggctggca
    10381 atggggacga tggatatcgt caaactttat ggtggtaaac cggctaactt cttagacgtt
    10441 ggcggtggtg caaccaaaga gcgtgtagca gcagctttta aattgatttt atctgatccg
    10501 aatgtgaaag ccgtgttagt caatattttt ggtggtatcg tccgctgcga tttgattgct
    10561 gatggcgtca ttgctgctgt aaacgaagtc ggcgtgaatg tgcctgttat tgtgcgttta
    10621 gaaggcacta atgccgcaca ggggcgtgag attttagcca atagcgggct gagtattcta
    10681 gcggcatcat cattaaaaca agcggctgaa ttagcggtaa aatctgcaaa ttaggaggaa
    10741 aaatgtcgat tttaattgat aaaaacacaa aagtaatttg ccaaggtttc accggcggac
    10801 aaggtacttt ccacagcgaa caagcccttg cttatggcac acaattagtc ggcggagttt
    10861 cgccgaataa aggtggcaca acccatttag gcttaccggt tttcaacacc gtacgcgaag
    10921 cggtagaagc aaccggtgca actgcaaccg ttatctacgt tccggctccc ggctgtaaag
    10981 atgctatttt agaagccatt gatgccggca tccaactaat tgtctgtatt actgaaggca
    11041 ttccaacctt ggatatgcta caagttaaac aacgtctaaa ccaaaccggc gtgcgaatga
    11101 tcggtccgaa ctgcccgggt gtgattaccc ctgatgagtg caaaatcggc attatgccgg
    11161 gcaatatcca caaaaaaggc aatatcggta ttgtttctcg ttcgggtact ttaacctatg
    11221 aagcagttaa acaaacaact gacgaaggct ttggtcaatc tacttgtgtc ggtatcggtg
    11281 gtgatccgat tccgggatct aactttattg acattttaaa actgttccaa gacgatcctg
    11341 aaactgaagc aattgtgatg attggtgaaa tcggcggctc tgccgaagaa gaagcggcag
    11401 ctttcatcaa agaaaatgtc accaagcctg tagtcagcta tattgccggt gtcaccgcac
    11461 caaaaggcaa acgaatggga cacgccggtg cgattatcag cggcggcaaa ggaaccgccg
    11521 atgaaaaatt caaaatcctt gaagatgccg gtgtgacaac cgtcagaagt ttagccgaaa
    11581 tcggttcagc tcttagaaaa attttaggct aaactaaaag ttcaagcagt catatttacc
    11641 catttttttg taaatatgac cgcttgtttt tttgctatta aattactctt tcgatttcca
    11701 aattaatggg tcaacacctt tatggataag gtcttgatgt tcttcaattc taaacactgg
    11761 ctctttgcca cttttcactt ggcgaagata gtcttttaaa ataatccaga caatcggagc
    11821 aagaattaag atagccacca agttaattac cgccattgat gccatcactg tatcggcaaa
    11881 tgcccataca atccctccgt ctcttactgc accgaagtac acaaagaata aaacgatggc
    11941 acggaatccc cacacaaacc acggactgtt tttaatgtag cggatattag tttctgcata
    12001 agcatagtta ccgataatgg atgtgaagca aaacagtaaa atcacaaatg ctaaaaagtg
    12061 taaaccaaat tcacctaaat ggaattgtaa cgcactttga gtaagtgaaa tacctcttaa
    12121 agtttcacca ccatagttat ttgacataag aatgatcact gcagtacaag tacagactac
    12181 aattgtatct acaaatacgc ccaacatttg aattaagcct tgacttgccg ggtgtttcgc
    12241 atcagaagtc gctgcagaat ttggtgcaga tcccatacca gcttcgtttg agaataagcc
    12301 acgtttaatc cccattagca tagttttgga taccaatgct ccaaacgttc cacctgcagc
    12361 agcagaaaaa tcaaaggcgc tttcaataat taaagagatt atacttggca ctttttcaat
    12421 attcatacct aaaataatta ctgcaataat caagtagaat aatgccatca ttggaacaac
    12481 ttgggcagaa actttaccaa tacgcttgac ccctccagaa ataattaacc ctgtaatcac
    12541 cactaatgtc atgcctacgt agactgggtt ccaatcccac gcatttttgg ttgcttccac
    12601 aatagagtta gattgcacag cattaaaagc aaaaccaaag gtgaagataa gcgtcactgc
    12661 aaaagcaata gcaagagaag gcagttttaa accacgagtg atgtaatagg ctggcccacc
    12721 acgaaacatt ccgtttggat ctttggtttt atacaactga gccagtgaag actcagcaaa
    12781 ggcggaactc attcccatta aggcggtaat ccacatccag aataccgcac ccggcccacc
    12841 caaagcgatt gcagtagcta ccccaccaat attaccaacc ccaacacggc tggctaatcc
    12901 agtagtaaag gcttggaacg gagttaatga tttcccttcc gtagaacgtc ctccccacat
    12961 ttcacgtaaa ctttgcggaa gaagacgcag ctggacaaaa cctgttgtaa gagtgaaaaa
    13021 taaccctgca ccgagcaata ggataatcgt tacatcccaa agtggaccgt cgattgtgtt
    13081 cacaatccaa gtcagtacac tctcaaaaaa tagaataatt gaatccataa agacctctta
    13141 attgaaaata aaacttccac attgtaaccg atttaatatt tttaaaaagt ttttttaata
    13201 cttttaataa aaatttttaa taacttatta atttagcgtt tgaaaaaaac gcctgtacca
    13261 gcatcaatga aactactgtg aaataatacc attccaaata gaattaatgc gagtccaagt
    13321 gtaaatttta atatccaaac gatatttcga ttaatttgag ctgaaaaata ccattggcta
    13381 accttaactg ccttatttct cgcaatgata acaagataag caaataagct taaagtcagc
    13441 cctgttccta ctgccatagc taatgctgaa ataacccccc aagcatagag attgagcgta
    13501 taagaaagaa ataaaacaag aatagcgcca gagcaaggtc ttgagccaat acttaatacc
    13561 aacatcagct gtgctttcca atctctcact tgttgcattt catttgaagt cggtaaatgt
    13621 ttatgcctac agctacaatt ttcggtatga atatgccctt tctgcgtgac aagcggtaat
    13681 tttccagctt ttttttgcga aatacgaatg gatttaatga taggctttcg cgctctgttc
    13741 accgttcgat acacctggta acaccagtaa atgccgaaca agatcatcaa accaaagctc
    13801 ccccgctcaa cccattttag ggttaaatta aaatattggc gagagagagt aaaaatcacc
    13861 acaatcaccg tcaccaatga aattgccact aagccctgca ccaatgctga ggcaaaagtg
    13921 attttcatcg cctgatttaa ttttgttttt tcaaaagaaa gataactgct cagaataaat
    13981 tttccgtgac caggcccaac tgcgtgaaat actccatata aaaaactaat aaatactaag
    14041 gtaataccgg ctttactttg attttcagct aattcattga gcgaagcgga aagctgtaaa
    14101 ttaaagtttt tttgccattc catcacttta aacaatatca ttggataaag ctgataaaga
    14161 gcaaataggc tcaaaaatcc tatcactatc attccccaat atgttgcttt taatcgcata
    14221 taatctccac tttttgagca aattgggcac caagagagta atctccattt tcaggcatat
    14281 ccagtgattg gtttttatcc aaaccggaag catataagcg taacttacta tctacttgag
    14341 gttgcaccaa tgttgcttta caacttgcat tactggtatt gacatcagca gggcgattat
    14401 attccatcgc aatataataa ctcggttcat aagtatagaa tctcacttta ctctgcttta
    14461 attcgtgagg tttagctaaa tgaaaagtaa tataaaaaat cactctgtta ttcttgattt
    14521 caaagcgagt cgctgtgggc tttgtcgtaa attttatcgg ctgattttga ctatcatata
    14581 aggtgctaaa ataatgattt tgcaatgcgg tttgcaccat ttctgcagtg atattctgct
    14641 gagttttttc tttatcttgg ctatttttca cttcataaat taactcagaa gaagcaattt
    14701 catctagcat ccattccatt tggaaagatt tcaacattga gccttccaca ataacattcg
    14761 ttttcaaatc aacaaatgaa tgtgggtgag aaaaaactgg cattgaatat aatgcaatta
    14821 acgtgataat cgtcttaata aatttcatat ttactttcac tataaaataa aaaagcgaac
    14881 aagttccccc tgttcgcatt tcaagaattt agtgagttgg tcgataagcc gagttctgtc
    14941 gtggacaatc attcctctag acgtacattt acacatacgc tcaagcaacc tacccgaact
    15001 ctcagcgggc caccgattga gttcctattt ggtcttgcta cgagtggagt ttaccctgct
    15061 gtggaatgtt accacccaca cggtgcgctc ttaccgcacc ctttcaccct taccgacaaa
    15121 gccggcggtc tgctctctgt tgcactggtc gtaggctcac gccccccgga cgttatccgg
    15181 cactctgccc tgtgtagctc ggactttcct ctcgtttact tgtcccccag tttacgtttt
    15241 cacgaattta gaggcttcaa taaaccagcg attgcctaac caactcagca ctagagtata
    15301 atgctttcgc aaaaaattgc aaggaaataa ccgcttgtag ttattatggc aaaataaaaa
    15361 aggattaagt tcatttaaaa acttaatcct cttcgcttta attcactcgt aaaaattacg
    15421 cacgtttgaa gtctaagtga actaattttg gtttctctat tttattacaa taatttcaaa
    15481 gggttattta atcaatttcc tttctatttc cgaaactata tacatttttc cgaaactcaa
    15541 attttaatca gattataaaa caagctattt tccttttttc tcattccaaa aataccatcc
    15601 aaaacatctt accgccaacc aagtgctcca cgcaaaaata ggtctatttt gcgcaatcaa
    15661 acaatccctt aaccgcttat ctgcttccgc tctactgact tttccgttta cgcccacgat
    15721 cgtgttgatg acagcacgaa ttaatattt
//
LOCUS       DANLXK010000058        15525 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.058, whole genome shotgun sequence.
ACCESSION   DANLXK010000058 DANLXK010000000
VERSION     DANLXK010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15525
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            263..1453
                     /gene="malE"
                     /locus_tag="PXD88_001460"
     CDS             263..1453
                     /gene="malE"
                     /locus_tag="PXD88_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL6281034.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            1572..3110
                     /gene="malF"
                     /locus_tag="PXD88_001461"
     CDS             1572..3110
                     /gene="malF"
                     /locus_tag="PXD88_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL6281035.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            3163..4053
                     /gene="malG"
                     /locus_tag="PXD88_001462"
     CDS             3163..4053
                     /gene="malG"
                     /locus_tag="PXD88_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL6281036.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            4128..6185
                     /locus_tag="PXD88_001463"
     CDS             4128..6185
                     /locus_tag="PXD88_001463"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL6281037.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(6299..9025)
                     /gene="malT"
                     /locus_tag="PXD88_001464"
     CDS             complement(6299..9025)
                     /gene="malT"
                     /locus_tag="PXD88_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL6281038.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSMNESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            9189..11558
                     /gene="malP"
                     /locus_tag="PXD88_001465"
     CDS             9189..11558
                     /gene="malP"
                     /locus_tag="PXD88_001465"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL6281039.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            11640..13718
                     /gene="malQ"
                     /locus_tag="PXD88_001466"
     CDS             11640..13718
                     /gene="malQ"
                     /locus_tag="PXD88_001466"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL6281040.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFISLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(13783..15444)
                     /locus_tag="PXD88_001467"
     CDS             complement(13783..15444)
                     /locus_tag="PXD88_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL6281041.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
BASE COUNT         4791 a         3215 c         2990 g         4529 t
ORIGIN      
        1 ttagagccat agccataatt atttaaaaaa cgccaattca gaaaaattaa ataaattttg
       61 tgatcaacct ctcattttta atgcctattt ttgtgaagca gatcacaaaa tgataaaaaa
      121 tgttacttag atcatacttt tagcttgggg ggcgtagagc aaagggtgat ctcaaataga
      181 ttgtatagcc cataatttgc cataatttaa taaatgggtt gtttcatatc cgtttctttt
      241 atttaacttc aaggagtttt ttatgaaaaa caaatgtgtc aaattcacct tagctactct
      301 tgctacctta gttctttcag gaacagtaat ggcaaaaatg acggaaggta aactcgttat
      361 ctggattaac ggtgataaag ggtacaatgg gcttgccgaa gtcggtaaga aatttgaaaa
      421 agataccggt gttcaagttt tagttgaaca cccggataga cttgaagaaa aatttgcaca
      481 ggttgcctca actggtgacg gtccggatat tatgttctgg gctcacgacc gctttggtgg
      541 ttatgcacaa tccggtttat tggctgaagt gaatgtaagc aaagaattta aagataaatt
      601 tgtcgatttt gcttgggatg ctgaaactta caacggcaaa attatcggtt atccggttgc
      661 gattgaagcg atttcattaa tttataataa agatttagtg aaagaagcac caaaatcttg
      721 ggaagaaatt attgagttag ataaaaaact caaaaaagag ggcaaaaatg ccattatgtg
      781 gaacttatcc gagccctatt tcacgtggcc gattgcggct tcaaacggag cttatgcatt
      841 caaatttgct aacggcaaat acgatccaaa agatattggt gtgaacaatg aaggggcagt
      901 aaaagcacta caatttgtag tcgatatggt gaaaaataaa catattagtg cggatatgga
      961 ctatgccgtt gccgaagcct cctttaataa aggacaaagt gccttaacca tcaatggtcc
     1021 ttggtcttgg ggcaatattg ataaaagcgg tattaaatat ggtgtaactt tactcccaac
     1081 attaaacggt caagcttcta aaccattcgt aggggtgtta agtgccggtg taaacagctc
     1141 aagcccaaat aaagatttag ccaaagaatt cttagagaat tatttactca ccgacgacgg
     1201 tttagatgca gtcaataaag ataaaccttt aggtgcggtg gcgttaaaat cttaccaaga
     1261 gaaattagcg gctgatcctc gtattgctgc aacgatggca aatgcgaaaa acggtgaaat
     1321 tatgccaaat attccgcaaa tgtcttcttt ctggtatgcc gaaaaatctg ctatcaataa
     1381 tgcagtgacc ggtcgtcaat cggtgaaaga agcattagat gatgcacatt cacgcattca
     1441 aaaacaacaa taattcttca tcattctgag tgggttatta tgacccactc tatttttaga
     1501 ttcaccctaa atacaataaa agtacagtaa aagtaccgta acaaaatgca gtaaaaattc
     1561 gaggtgctgt tatgctaact caaactcaat ccaaatccac tcattggctc aaatatctct
     1621 tagccggatt agtcttgctc cttgacttct atcttgttgt cttaatgtac tcacaaggtg
     1681 aatatctttt tgctatttta acgctgatta ttctaacttc cggtgtctat atttttacca
     1741 ataaaaatac ctatgcttgg cggtatgttt accctggcat taccggaatg gcaattttta
     1801 ttttgtttcc gctggttgcg actattgcaa ttgcgtttac caactatagt ggttctaatc
     1861 aattatcctt tgaacgagcg gtatccgtct taactgaaca acgctatttt gccggagata
     1921 aatatcaatt caccctttat ccgcaagcag ataataaata tcaaattgca ttaaccaatc
     1981 cgacgacaga gcaaactttt gtgtcagagc cgatttcatt ggctaccgga acgaatgtgg
     2041 ttgtaaccga gcaaaacaga ccaactggcg aagtcgctcc ccttaaagtg attacgcaaa
     2101 atcgggccgc acttcaatca atgaaagtgg ttttaccgaa taataatgaa ctgacaatga
     2161 gctcattacg tcaattctcc gagcaaaaac cacgctatca atttgatgaa gaaaataaaa
     2221 tattactcaa taatgagact ggcaaacgtt atcaagcaaa tgacgaaacc ggtttcttcc
     2281 aatcgattga tgaaaacggt cattggcaaa gcgaaacact tgaaccaggt tatactgtca
     2341 catcaggctt taataacttc attaaaattt ttaccgatga aggtattcaa aaaccttttg
     2401 tccaaatatt tatttggacg gtgatcttct ctttattaac cgttgtcttt accgttattc
     2461 tcggtatggt tcttgcctgt ttggtacaat gggaggcatt aaaaggtaaa gcagtctatc
     2521 gtgtcttatt gattttacct tatgccgtac catcatttat ttcgattctg atttttaaag
     2581 gactatttaa ccaaagtttt ggtgagatca atatgatttt aaaccaacta ttcggcatca
     2641 gccctgaatg gtttaacgat ccgctccttg ccaaagtgat gatcttaatt gtcaatacgt
     2701 ggttaggtta tccttatatg atgattttat gtatggggtt actcaaagct attccggctg
     2761 atttatatga agcctccgca atggacggtg cttccacttg gcaaaacttc agtaaaatca
     2821 ctttcccatt actgttaaaa ccacttactc cgttaatgat tgcttcgttt gcatttaact
     2881 ttaataactt tgtattaatt caactattaa caaacggtcg cccggatatg attggaacaa
     2941 ccactccagc cggttatacc gatttattag tcagctacac ctatcgtatt gcctttgaag
     3001 gaagtggtac gcaagatttc ggcttagcag ccgccatcgc aaccattatt ttcttattag
     3061 tcggtggctt ggcactctta aatatcaaag caaccaaaat ggaattataa aagcgggagg
     3121 gatttaacaa tcccgacccc aaactaactt taggagttat atatggcaat tgttcaatct
     3181 aaatctgtgc gttatcgggt atgggcaacc catttcatct taatctgttt ccttgcctta
     3241 attattttcc ctttattaat ggtgattggc atttcgttac gaccgggaaa tctggctatc
     3301 ggtgatatta ttccaagcca aatttcgtgg gaacattggc aagccgctct tggttttgat
     3361 gttacacacg ccgatggtac agtcacaccg ccgccattcc cggtgctacg ctggttatgg
     3421 aactccatca aagtggcaac aattacctct atcggcattg taaccttatc tacgacctgt
     3481 gcttatgcat ttgcccgaat gaaatttaaa ggcaaaaaaa ccattctaca aggtatgctg
     3541 attttccaaa tgttcccggc agtgctttcc ttagttgcct tatatgcgtt gtttgatcgt
     3601 cttgggcagt atgtaccgtt tcttggttta aacacacacg gtggtgttat ttttgcctac
     3661 ttaggcggaa ttgccttaca cgtttggaca atcaaaggct actttgaaac gattgatggt
     3721 tcattggaag aagccgcttc ccttgatggt gcaaccccgt ggcaagcgtt ccgattaatc
     3781 ttattaccgc tttcagtgcc gattttggcg gtagttttca ttctttcatt tattgccgcc
     3841 attaccgaag taccggttgc ctcactccta ttgcgtgatg taaacagcta caccctagcc
     3901 gttggtatgc aacaatacct ctatccgcaa aactatttat ggggtgactt cgcagcagcg
     3961 gcggtcttat ccgcaattcc gattacgctg gtcttcttat tggcacaacg ctggttaatc
     4021 ggtggtttaa ctgccggcgg cgtgaaaggc tagtttgcaa aaaattctct aaaaacgacc
     4081 gcttgtcgag ctgatactgc ggtcgtcaat ctttattagg gctgtctatg aaaaatgcgt
     4141 taccttatct ctgcttattc tatacctcaa gcctttttgc ccaatcttgg caacattccc
     4201 atttttctga ttttaacgat gatctcgaaa aacatttttt tcaatcccaa gttcaattgg
     4261 aaaaagggag ctatccgctt aggttcaaat ttggcgaaca atgttatcaa ccccaacaag
     4321 cgataaaatt aaatcaatcg gttgcgttag tcccttgtat aaatgaagct ccacaactgc
     4381 ggttgtttcg tcaaggcaac tatctggcac aaattgatct gcgaagcggc actccgacac
     4441 ccacaatcag cgtagaacag cagctacagc acaatgaagc gatgtttcaa agttgcccga
     4501 attgggataa aaaaccgatt gaaattgatg tttcttccac ttttgccgaa ggcgaatcgg
     4561 ttagcgattt ttattcaggc aacaccgcta tcgttaaaaa cggcaaagtc accttaatgc
     4621 ccaatgaaaa cgcaagcggt ctgattttgc tggaaaaaag caataccgaa aatacggcaa
     4681 cgtttgattg gaaaaatgcc accgtctatt ttgtgctgac cgaccgcttt tataacggcg
     4741 atccgaccaa tgaccacagc taccaccgcc aaaaagacgg aatgcaagaa atcggcacct
     4801 ttcacggtgg tgatttaaaa ggattaaccg aaaagctcga ttacctacaa caacttgggg
     4861 taaacgtatt gtggattagc tctccgttag aacaaatgca cggctgggtt ggcggcggtg
     4921 ataaggggga ttttccgcat tatggctatc acggttacta tcatttagat tggacgaaat
     4981 tagatgccaa tatgggtact gaagacgatt taagtcgctt tgttcaacaa gcccaccagc
     5041 gtggtattcg ggtgctattt gatgtggtga tgaaccatac cggctacgcg acgcttgccg
     5101 atatgcagga gtttaacttt ggcggatttt acttaacacc ggacgaaatt agccgcacat
     5161 taggcgaaaa atggacacac tggaagccga aatcaggaca aaattggcac agtttcaatg
     5221 atttcattcg ctttaacgat aatcaggctt ggcaaaattg gtggggaaaa gaatgggtta
     5281 gagctgatat tgccgattac gacagcccta aatttgatga tttaaaaatg tcgctcgctg
     5341 cccttcctga tctaaaaacc gagagcgaac aagcggtcaa attacctgaa ttttttgcaa
     5401 ataaaaatac caatgccaaa acattaccaa acgccaaagt gcgtgattat ttaattggtt
     5461 ggttatccga ttgggtcaga aaatatggca ttgacggttt tcgggttgat accgccaaac
     5521 acgttgaaaa atccacgtgg ctggtattaa aacaatcggc acaacaagcc ttaaacgaat
     5581 ggcaaaaagc caatccgaac gccggtttta acgatcgctt ttggatgaca ggagaagcgt
     5641 ggggacacgg cgtgttcaaa agtgactatt atcaaaacgg ttttgatgca atgatcaatt
     5701 tcgattttca agatcaggct aaacaagggt taaattgctt tgcccatatt gagccgattt
     5761 atgccgaaat gaatcgcaaa ttaagcgact tcaatgtgtt gagctattta tcttcacacg
     5821 atactcgatt atttttccat tcggatagtg aacaaaatat cgaaaaacac aaaaccgccg
     5881 caaatttgct gttgctttca cccggtgcag tgcaaatcta ttatggtgat gaaagtgggc
     5941 ggacatttgg tgcgaccggt tcagacctga tacaaggcac ccggtcggat atgaattggc
     6001 aagagttgca gcaagatcct cagaaacagg cattgcatca acattggcaa aaattgacac
     6061 aattccgcca acgccatccg gctattggcg caggtgtcca tcaactcatc aaaaatgata
     6121 gctactttgc atttaagcgt gtgttgaatg aagataaagt gatggtggtt tgggccggaa
     6181 attaaatcta ctttagcttc aagttttctc tcttctgggg aaaacttgaa gccggttcgg
     6241 ggaaacaagt tgcaaaaaat tactaaaaat agaccgcttg ttccccatga gcttgtgatc
     6301 aatgataccc catcaacatc agcagttctt tcgtatagct gattgcttcg ttacgattcg
     6361 tcacaccgat tttctgataa agatttcgga tatgggtttt aatcgtggtt gcagccactt
     6421 gcaattcatc tgaaatttgt tcattgctat atccggagta aatcaaaccc aatacttgcc
     6481 attcccgctg agtgagcgga ctaattttta agagttccgg cactttcgga tttttcaata
     6541 attgattcac aaagttttca tcaaaatggg caaatttttg gcgataaaat tgattgatgt
     6601 tgcgtaaaat aaactgtgct ttgtgcaata ccagttcatc tagcacatta agttgcaata
     6661 aatggcggat ctgctgtgcc attacatccc cttcaatcac aaacgcactg ataaaattcg
     6721 tttggcgggt gagttttagt gcctgaatta aatcttgctg agccaattct ttctcgcctt
     6781 gtaaaaaata aagccggtta cgaacaatta atgcgcgatt taaatcgcta atcagagaaa
     6841 atttttcagc cgtttcaatt aaattatcta aaatggcttt cgcctcgtga tattcctcaa
     6901 gcaagattcg agaccgtgca atatttcgcc attgcacttg ggtaaaatga tttttatctg
     6961 aaaccggtga ggggttttga attaaccagt tcctcaccgc agaaacgtca ttggtcatct
     7021 gccaataaaa tatacgtacc tgatcggcgt tggcaatcca atcgtggtga taagaatgag
     7081 aatgttctaa ttgttcgacc tcgcctaata atcgggcagt gttatccaaa ttgcctcgag
     7141 ccaacgagat cttcgtgagt aaagttaagc attgtaactt atcttcaaat ttagataagg
     7201 cattcattcc ggcaactgcc attgattcag ctttatctaa gttataccat tcccataaaa
     7261 tcttgccttt agaacgtagc aaaaattcat acatcggcac tttttgtaga tggttttctt
     7321 tcacaaactc gcttgcttta tctaacattt cataggctgc ttgtgaaaac ccttgggcaa
     7381 gcaaaatttc agattgttga agctgtgacc acaaaatatt gtggtaagta tgatgctgac
     7441 gtgccatacg ctctgctttt tgcaacattg ctaatgcttc tgccagattg ccgtggcaat
     7501 gatgagcttc gccaataata gacgttgcaa caatatgagc ataataggca ttttctgaaa
     7561 gatcgtttaa cgcttcagac gctaattgaa gtgcggtatt ctcatcaccg gaattgatag
     7621 caacttgtgc ccgtagcaca ttaaattccg cattggcagt tttgctcaat tcaattttat
     7681 tttcagttaa tgcacgagaa aaatccgcta aaataccacc tacttcaata tggcggtgct
     7741 ggctttgtac caaccaggct ttgagtaaca ccaaattagt atgttcggtt aaatgggcgt
     7801 aatctaagca atttaagctc tcttccaata atttgagttc tccttgatga aacaccgtcc
     7861 aagcgtgttt gctcaaaata ttgagtagta atccggtatc cgataactgc attgcgtgat
     7921 gtaaggcttc tgtaacatag cctaattgta accacgcatt cgccgccttt tgatgcagtt
     7981 gcggtaattc agcatataac tcattttggc aacataaatt taaaaaggaa gcaaaaagcg
     8041 gatggaattt ccaccagcta tcatcactac tctgccactt actgtttgcc atttgttgta
     8101 aaaacaaacc ttgcttttcg agagactcta atttggtgcg actgttttgc tcccctgtaa
     8161 cagcctgcac taaagactca ttcattgaat gcaaaaccga acaacgcaaa ataaacaaac
     8221 gagtctcttc atcgacttta ttaagcactt catcggctaa atattcgtta atatgaaaat
     8281 ggtttgattt ggctaaacgt ttggcaatat cttgcagtgg tacttgtagc gtgtgtgatt
     8341 tattttttgc aaaaaggcta attagctgaa gggctgtggg ccacccttca acttcgttac
     8401 acagtgcgat aacatcttgc tgatttaact ccgaacctaa tcttgcttga aaaaaagcgg
     8461 tactttcttg gtgatcaaac attaactggt taatatcaat ttccaataat tgttcttgca
     8521 ctcttaaact ggcaatactt aacgggggaa ttgatcgaga aatcaagata agcgtcatat
     8581 tagacggttg atgtttaatc caatatttta atgcttcgtg aatttcatca ttttcaataa
     8641 tatgataatc atcaatagca agataaaaat gctctgaaaa tgccgcggct ttaatcaata
     8701 attgattaaa taaagctaat aaattagctt tacgattttc ctctaacaat acgtctattt
     8761 cttcattgat tgctgaatgc aatgccgcac taaaataagt ggcaaaacga tctgaattat
     8821 tatcgccttc atctaacgca taccagccga tattcttttt attttcaatc cattgggaaa
     8881 ccagagtggt tttgccataa cctgccggtg catttatcaa tacgaccgga taactgcaag
     8941 atttgtctaa ttcttgaatt aaacgttttc gaggaatgct gttttgtaat cgaaaagaac
     9001 aaacaagttt tgatggtatt aacataataa attcaatttt ctctcataac aaaataggga
     9061 tgatatatcc accatttgtg ttctcactac ttccttataa tcataccata caagatgatt
     9121 attgggatga tttgatttta tttggatttt acataatagc gacattcatc tttaaccggg
     9181 ggtttcctat gacatttaat tctattgtag aaaaatactg tcgctacttt gatgtgacag
     9241 atccaaaaca ctttacctta cagcagtggt atcaagttgt tgctgaaggt tcccttgagc
     9301 taatttatag ccagcctgca accaaaccga cagaatcacg ccacgtgaac tacctctcaa
     9361 tggagttctt aatcggtcgg ttaaccggca ataatttaat gaatttaggt tattacgaac
     9421 aaattcgtga ctatcttaaa caatatcaag ttgaattagt agatgtttta gaacaagagc
     9481 gtgatccggc attgggtaat ggcggattag gtcgtcttgc tgcctgcttt ttagattcga
     9541 tggcaactgt cggacaaaat gcaaccggct atgggcttca ttatcaatat ggtctgttta
     9601 aacaaagctt caaagaggga atgcagaaag aagcagcgga tacttgggct cgtgacagct
     9661 acccgtggca tcgttttaat ccgtctaaaa cccgccatat cgggtttggt ggaaaaatca
     9721 aacatatcca agccgatcaa tatgaatggc agcctaaatt gaccattcaa ggcaaagcct
     9781 ttgacttgcc gattgtaggt tataaaaaca acatcattca accattacgt ttatggcaag
     9841 cagatagtga ccaatctttt gattttgatg cctttaatga gggtaaattt ttaagtgccg
     9901 ataaaacgat tgtcaatgca gccgcactaa ctcaagtgct gtatccaaac gacaaccatc
     9961 aagccggaca aaaattacgc ttaatgcagc aatacttcca ttgtgcctgc tcggttgccg
    10021 atattttaga tcgtcacatt agcgaaggtt attcgttaga agatttagca aaacgccaag
    10081 ttattcaact caatgatacc catccaacgc tcgctatacc tgaattgatg cgtgtactgt
    10141 tagatgaaca tcaattcact tgggagcagg cttgggatat ttgcagcaat acctttgctt
    10201 acactaacca taccttatta cctgaagcac ttgaacaatg ggatcaacgc ctatttaagc
    10261 agctattacc tcgccattat caaattgtgg aaaaaatcaa tgatattttc cacgacaaag
    10321 tacaggcaga atttggtgat gatgcaaaaa tttgggaaaa attagccgtg ctatttgatt
    10381 accgtgtgcg tatggcaaac ctctgcgttg tcacctgctt ccgtgtaaac ggcgttgcgg
    10441 aaattcactc cgatctctta gtgaccgatc tattcccgga ataccacaaa ttattcccaa
    10501 caaaattctg caatgttact aacggcatca cacctcgccg ctggattcga caagctaatc
    10561 cacaattaag tgatttattg gatcgtacct taaaacaaga ttggacacac aatctggaat
    10621 tattaaaagg cgttgaacaa tatgcggatg acaccggttt ccgtgaagaa tatcaacgca
    10681 ttaaacgcaa taacaaagtg gttttagcca atgaaatcca taaaacatta gggttaaatg
    10741 tcaatcctaa tgcgattttt gatgtgcaaa ttaagcgttt ccacgaatat aaacgccaac
    10801 atttgaattt gttaaacatt attgcgacct atcaatcgct aaaagctaac ccgaaccaag
    10861 actacacacc acgtctattc ctattctcgg gcaaagctgc accgggttat tatttagcaa
    10921 aaaatattat tcacgctatt aataatgtgg cagatattat taataacgac aagcaggtaa
    10981 atgatcgact acaagtggca ttcttaccgg attatcgagt cagtcttgcg gaaaaaatta
    11041 ttccagcagc tgatgtatca gaacagattt caatggcagg taaagaagcc tccggtaccg
    11101 gtaatatgaa attggcactc aacggcgcat taaccttagg tacgctagac ggtgccaatg
    11161 ttgaaattgc tgatatggtc ggtgaggaga atgtctttat cttcggtcac accgtagaaa
    11221 gcgtgaggga attattagca aaaggctacc aaccgaaagc ctactataac caagatccga
    11281 ttctgaaaaa tgcggttgat ttcttagcca caggaaaagc ctctaacgga gataaagagg
    11341 cattcaagct gatgttagat agcctgttgg aacgagatcc tttcttagtc tttgccgact
    11401 ttgatagcta tcgccaagca caagagaaaa ttggtgtagc ctatttagat caagaaactt
    11461 ggctgcgtag tgcaatttta aatactgctc gtttgggtgc atttagctca gaccgctcaa
    11521 ttaaagatta tcaacaacgt atttggttga atagataata aattcgggcg acttctacaa
    11581 taaaggaagt cgcctatttt ctgctgtatt tcatatgtat ttatatatgg agagaaatga
    11641 tgaaaataac tgccaaacaa tattatcggg ctggaattat gccctatttt ttcgatgagc
    11701 gtggtgtaaa aaaaacagca tctgaaaaaa taaaacattc gttattcaaa gcctttaacg
    11761 gcaatactca agcaagagaa acacctatcc ctacggtcaa cattttttac cagcaccaac
    11821 cctgtttttt accttttcat ttagcggata aaaaacatcc gttaaccggt acttggcagc
    11881 tacaactaga aaattcaaac caaattattt ccggcaaaat taaagcaagg ggaattacat
    11941 tacctcaaga tttgccctta ggttatcacc aattacagct aaaaacggta gataaaacct
    12001 ttaattgcac cattattatc gctccggaac gctgctacca accacaagcc gtcattgaac
    12061 aaaaaagatt gtggggaacc ttcctacaac tatacacctt aaaatcagcc cacaactggg
    12121 ggattggcga ttttggcgat ttaaaagact tcattcaaca gattgcccct taccaagcag
    12181 attttatcag cttgaacccg attcactcac tttttccggc aaacccgaat tctgccagcc
    12241 catacagtcc atcctctcgc cgatggctga atattgctta cattgatatc aatcagctag
    12301 cggaatttca acaaagtgat gaagcacaaa cttggtttca ttctgctgaa atccaacaac
    12361 aattatcaga attacgcact caggattggt tgaattacga gcaaatcatt ccgttgaaat
    12421 tgaaagggct acgctttgct ttcgcaaaat ttcagcaaaa tatgaccgct tgcgctgccc
    12481 ctgcttttat cgaatttgta caaaaaggtg gtgaaagctt acaagttcaa gccacatttg
    12541 atgcccttca tcagcatcta tcggcacaat ttgccgacca atggggctgg gatttctggg
    12601 agaaagccta ccaagactac cactccgcag ccgtgcagca atttagagaa acgcataaaa
    12661 ccgacataga attttacctt tggttacaat tcgttgccga tcaacagcta gcagaatgtg
    12721 atgctatctg ccgtcagcaa aatatgcgta ttggtatgta tcgcgatctc gccgttggcg
    12781 tcagcccgaa tggtgcagaa acgtggaatg acaaacaact ttattgctta aatgcctctg
    12841 tcggcgctcc gcctgatgta ttaggtccgc aaggacaaaa ctggggctta accccaatga
    12901 atccgcatgt attaaagcaa caagcctacc gtccgtttat tgagttagtc agagctaata
    12961 tgagtcattg cggtgcatta cgccttgacc atattatgtc tttactccgt ttatggtgga
    13021 tccccaaagg cgatagtgcg gttaatggtg cttatattcg ttatccagtt gatgatttaa
    13081 tcgcaatttt ggcacttgaa agccaacgcc accaatgcct aattatcggt gaagatttag
    13141 gtactgtgcc aaaagaaatt gtgagcaagc tcaaaaatgc ggggatttta tcttacaaaa
    13201 ttttctattt tgaatttgat gaacaaggga agagtcgaga cttacagcat tacccttacc
    13261 aagcaatgac cacattaagc acccacgatt taccgactat caatggttat tggcgtggct
    13321 atgattttga attaggcgaa aaattcggcg tctatcctaa ttcgaatatt ttggcaatcc
    13381 ttaagcaaga tcgagtcaat gccaaagcca aaatcttaca acgcttacaa gaacataacg
    13441 tagagatcgc acctgaaatt agcgagcaac ttaattctcc ggtgaatacc gcatttattc
    13501 actgtttaca aacctatgtt gcaaatgtaa gcagcggatt attcggcttc caacccgaag
    13561 actggttggg tatgactgag ccggttaaca ttccgggaac cagtacacaa tatgcaaact
    13621 ggcgacgtcg gcttagtgtt aacctcgagg agatcttcac agataaagat attcaagcct
    13681 tattaaaaga agttaattta atccgtaaaa atcaataaaa gttagataag aaaaaaggcg
    13741 actttccgtc gccttttggg cttatatgct tgatgtctat ctttatccac ctgaaaccca
    13801 caacataatc gctagcactt gaggtagcat aatacgcaaa aacattacta gtgggtaaac
    13861 agttgcatag gataacgctg cagcgccatt tccctcttta atttcattgg caaaagcaag
    13921 cgctggagga tcagtcattg agccggcaag taatccacaa atcgttaaat agtttacttt
    13981 gttatacatt ctggcaatca atcctgctat catcaatgga acaaaagtaa taatcgcccc
    14041 atagcatatc cactcaacgc cctcactgct taatagcgtt tcgagaaatc taccgccaga
    14101 ttttaaacca actaccgcta aaaacagtac aataccgatt tcacgcaatg caagattggc
    14161 acttggtggc ataaaccagt agagtttact gaaactacca attcttgcaa gaataagagc
    14221 aaccaccagt ggtccaccag ccaagcccag ctttaacgca acagggaaac ccggtaaata
    14281 aatcggtaca gaaccaagta atactcccaa accgatcccg ataaatattg gcaacatttg
    14341 gacttgttgc aactttgagt gcgcattgcc gataatcgtc attaccattt caatatcagc
    14401 ttgccgccct actaaattga gaacatcacc aaattgtaac gtcatatcac ctgttggtac
    14461 taattctaca ccggctcgat ttaaacgaga aatgacaaca tcgtatttgc ctttaagcat
    14521 tagctgacga atttgtttcc cgaagacttt ttcattcgtc actacagcac gttcagaacg
    14581 gtaaatcgtg cctttggttg agacagatac atctactgcc tcacctaaaa taatctgcat
    14641 ttttcgtaat gaggattctt cacctactaa gtgtaaaata tctcctatct gtagaatcgt
    14701 atctacacgt ggaatagaaa gctcattccc ccgttttaag cgtgaataag ctacttcgtg
    14761 caaattaaaa tcaggaattt gtttcaacgt taaaccgtga atatttggat tagtcagacg
    14821 gacatttaag gtactaagtt gatctttact tctattttgc tgtttgttaa aagcctctgc
    14881 ttccgcctca atattgattc gaaataaaat ccgaatcagc cacattgaaa gtagaattcc
    14941 gataatgccg aacgggtaag caatcgcata actcattccc ataatttcag ttacactctc
    15001 agcgcttaac tcagccaata cctgttgacc tgctcctaaa gaaggggtat tggttacagc
    15061 cccggagaaa atgcctaaaa tcacaggcaa aggaacattg aagaatttat gaataagaat
    15121 aactaaaata ccgctaatca gtacaatcag taccgcaaaa ccattgagtt ttaagccaga
    15181 atgttttagt gaggcaaaga atccaggtcc tacttgaatt ccaattgaat aaacaaataa
    15241 aatcagcccg aactcttgaa taaaatgaag cgtatgggca tcgagcttca catcgaattg
    15301 cgccataaaa tgggagacaa acagcccacc aaataacact ccccctatac ctagccccac
    15361 gcctctgatt ttaatatggc caatccataa gcctagaacg gccactaaag ataataaact
    15421 gacagtaagt gcaatttcgc tcattacagc ctctctttaa tatgaaatac ctcaaaaatg
    15481 gtatccaatt ctaccaaatc tcaaaaacga aaaatgagat ctatg
//
LOCUS       DANLXK010000059        15443 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.059, whole genome shotgun sequence.
ACCESSION   DANLXK010000059 DANLXK010000000
VERSION     DANLXK010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15443
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            1..180
                     /locus_tag="PXD88_001468"
     CDS             1..180
                     /locus_tag="PXD88_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281042.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            173..460
                     /locus_tag="PXD88_001469"
     CDS             173..460
                     /locus_tag="PXD88_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6281043.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(586..2688)
                     /locus_tag="PXD88_001470"
     CDS             complement(586..2688)
                     /locus_tag="PXD88_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL6281044.1"
                     /translation="MKSFKLLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGL
                     KVQSNVVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNR
                     LTVERQAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGV
                     DYATKTKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGV
                     YVEAITAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASH
                     NYATRSPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDI
                     KDALGGGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTI
                     WEVNRQTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPE
                     DNFFVTGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQR
                     GQLSARGREFRAGVNYTF"
     gene            2971..3717
                     /locus_tag="PXD88_001471"
     CDS             2971..3717
                     /locus_tag="PXD88_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL6281045.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            3913..5676
                     /gene="fucI"
                     /locus_tag="PXD88_001472"
     CDS             3913..5676
                     /gene="fucI"
                     /locus_tag="PXD88_001472"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL6281046.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            5870..7303
                     /gene="fucK"
                     /locus_tag="PXD88_001473"
     CDS             5870..7303
                     /gene="fucK"
                     /locus_tag="PXD88_001473"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL6281047.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAMKPNVKRVEPSSNSQFYK"
     gene            7378..7809
                     /gene="fucU"
                     /locus_tag="PXD88_001474"
     CDS             7378..7809
                     /gene="fucU"
                     /locus_tag="PXD88_001474"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL6281048.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            7869..8522
                     /locus_tag="PXD88_001475"
     CDS             7869..8522
                     /locus_tag="PXD88_001475"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL6281049.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            8584..10113
                     /locus_tag="PXD88_001476"
     CDS             8584..10113
                     /locus_tag="PXD88_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6281050.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            10110..11108
                     /locus_tag="PXD88_001477"
     CDS             10110..11108
                     /locus_tag="PXD88_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6281051.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            11132..12079
                     /locus_tag="PXD88_001478"
     CDS             11132..12079
                     /locus_tag="PXD88_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6281052.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            12135..12386
                     /locus_tag="PXD88_001479"
     CDS             12135..12386
                     /locus_tag="PXD88_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL6281053.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            12515..13666
                     /gene="fucO"
                     /locus_tag="PXD88_001480"
     CDS             12515..13666
                     /gene="fucO"
                     /locus_tag="PXD88_001480"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL6281054.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
     gene            13933..15378
                     /gene="aldA"
                     /locus_tag="PXD88_001481"
     CDS             13933..15378
                     /gene="aldA"
                     /locus_tag="PXD88_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL6281055.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
BASE COUNT         4634 a         3152 c         3387 g         4270 t
ORIGIN      
        1 atgtttaaag agaaaggcta tgatgaattc ctagcagaaa aaattcgcct tggcttagaa
       61 gatatgcaat caggtaatgg tctttcactc gatgaatcaa aagcacgaac caaacaactg
      121 attgaacgta aagcaagaga actcgcaaac tttgaacaag agaatatcat ttatggctaa
      181 aacattacga attagcagta gagctcaaaa tgatattgaa gaaattttag cgagcgtaat
      241 tgaatatact ggttttgaaa gtagtggaat tcgcttacaa gaagatattt accaaaaatt
      301 tgagactatc gcttatatgc cctctgcggc tggacgttta agagaagatg gcacaagaga
      361 agcattcact aggcgttatc gtattgttta taccgaatta gaaaatgaag tgtggattat
      421 taccattatt catagtagca gactttatcc acgcatttaa ataacaaacg actaaaatag
      481 tcggtttttt atttgcaaaa aattaataaa atatcaccgc ttgtaagctc cataaaaaaa
      541 agcccgattg taacatcggg cgttttagtc tgaatttaag tcagattaga atgtgtagtt
      601 cacacctgca cggaattcac gtccacgagc tgataattga ccacgctgac cgtgtgcgtt
      661 gtatttttta ttcgccacgt tatccactgc gaagtttaca ttcacgctat catctttaag
      721 tggtttccag tttaaggtga tatcagttac attgtagccg tctttgcctg taccggtatt
      781 tgtttgtaat gttccgcccg taacgaagaa attatcttca ggtttcactt tctcaacaat
      841 acggtggtgt acgccaacct ctaaatttgg ttgttcaaag cgatagctta aagaagctgt
      901 ccaagtacga ccgatagctg aggcgtattc tgggttagta cttaataatg gtttttcttc
      961 ccgcttacca gtttgtctgt ttacttccca aatagttggt gagtagaaac gcggtttgct
     1021 gtgtgcaaca ccaatacgag cagtaaaacc accattatgg taacctgcat ttaactcata
     1081 accacggttt ttaattttac ctaggttcat aattaactca ttattaggat tatggctatc
     1141 acgaccacca cctaatgcat cttttatatc ttgccagaaa tagctaccat caaaactgaa
     1201 tgtaccattg ttatagttga aaccgatttc agtattacga gctttctccg ctttagtatt
     1261 gctaccaata ctaacgattt ttctatttcc gtgagccgtt agtgcatcgt ataaacgagg
     1321 gctacgagtt gcatagttgt ggcttgcact taagcttaaa tgttcaattg gctcatagat
     1381 aagcccaacg cttgggctga atgcaccatt actacgctct ttaccatcca ttgctttgaa
     1441 tttgaagtgg tcgtaacgta caccggtagt taaagttact ttatctactg gagcagtaat
     1501 tgcttcaaca tacacgccgg tatcggtttt ctcttggttt ttcacaagag ggttaaattt
     1561 agtgtgtggt ttagcttctt ggtggcgata gttcacaccg tattttaata atacattttc
     1621 gtgaagggca gaatcaaagt ttacgtttgc accgtgggtt actattttag ttttggttgc
     1681 ataatctaca ccaccagcat aaccattacc tgtttcattc tcagaccaac gaccttgtac
     1741 taactgatac acgttagctg ttgcttcttg agcaaaacct aagtttttac cagtccattc
     1801 taagttagtt ctttgaaccg taattctacg gttagctgga gcttggcgtt ctacagttaa
     1861 gcggttgtac ggagaaacct ttgtgccgtt aggtgctaca tcaaattctt cacgcactaa
     1921 acgctgacct tcatttcgct cacttgaatg gcttaataca aaacggtgat ctcccaatgt
     1981 tgcacctaat ttagctaaaa agctggtttt atctagtgca ctatacggaa cacggtttgt
     2041 gccgaattgg tttacgtaat ctttaccgcc tttatagtcg cgatctctca caagattacc
     2101 tgagactaaa gcatcaaaga tttcgccttt accatataag gttgcattga aattgtgagc
     2161 gtggtttgtg ctgaagccag tacctaattt tgcaccgaag tttttatcgc tgttttttaa
     2221 taaatctaat gcatcaacgg ttttagcaat tactgcacca ttagtttgac caataccggc
     2281 tgaagcactg cctgcacctt tttgtacaga aacaattttc accaatgccg gatctaacat
     2341 atgacgacct tggtgataca aaatttggct atctgagtaa gtgttatcta cttttacatc
     2401 aattgagttt tgacccatac cacgaatata gagatattgt gatgtaccgt taccaccacc
     2461 taagctaatt gccggctcat cttttaataa accacgcaaa tcggtttggg tgctttcatc
     2521 ttttttctta gttgttacca cattgctttg tacttttaaa ccttgattat ctgttacggt
     2581 aacagtatct aatactactg catctgttga agcagtttga gccactgcat tagcagcaag
     2641 tacgctcaat accgcagcag aaacagggag caatttgaag cttttcattt tatttatatt
     2701 ccttaggtaa attatttaag aggattatct gtttgatatt aaaaataatt ctcaacacca
     2761 aacgttcgca aattttacag agataaaaat gattgtcaat tagtctgaaa tgaaatttca
     2821 caaaatatat tacaaatttt acaaaaagtt ccctaaattt aaccgcttgc aacacaaaat
     2881 gtgatcgcct tctaaaaatc aaatttgctt gctcgacagt aacgctacaa gcggttaaat
     2941 ttggagaaaa atttacaaaa aggatagatt atgcagctgc gacacaaaca gataatggaa
     3001 tatatacaac agtttgatga agctaacgtt caagaattgg cggaacattg tggggtttcg
     3061 attgaaacta tccgccgaga tttaaataag ctagataaag atggattatt acatcgcact
     3121 cacggtggag ctgtgagcca taaaaagcga gatattggtc gctcatttac cacccgacaa
     3181 cggctgaaca gtgaggcgaa acgcagtatc gcagaaaatg tgttggaata tttacaacca
     3241 gaatcggtga ttgctttaga tgccagctca acctcttgga atgtggcaca gcgtattcca
     3301 aatattcctt gcaccgttgt cagcagttca atgcggatta tctacagcct ttcacacaaa
     3361 ccgcacatta aaacgattgc caccggtggt atttattccg aaaaatacga tgccttctat
     3421 ggtccattat ccgagcagtt actgacccgt ttaaaaattg atcttgccat tctttcttgt
     3481 acaggcattg ccgatggggc gatttgggaa tcaaatgaaa ttaatatttc ccttaaacgt
     3541 aaattaattg cgaacagtaa acaggttttt ttattagccg atcacagtaa atttgagcgt
     3601 aaagacttgt ttcgtatcga agatttatct tgcattgata aattatttat caaccaaccc
     3661 ccaccggact ttctcaaaaa ttattgctta gcacatcaaa ttgaaatcat tatttagtga
     3721 tttctgcccg attttattca gaaataaaac aaatcgggca ttcttttttc actcattttt
     3781 accaaaatcc cccatttttt gtgatcgcac tcacaaaatt taaactaaat tcgcattttt
     3841 cttcataact catattgcgt atgcataata aattcaatcg caaatttttt taaccaatcg
     3901 ggagaactat ttatgacaac gttgaaatct acccctgtaa aaattggtat ccgcccaacc
     3961 attgacggtc gccgtttagg agtgcgtgaa tcacttgaag atcaaacaat gaatatggca
     4021 aaagccgttg cacaattaat tcaatctgaa gtccgccacc caaatggtga tttcgttgaa
     4081 tgtgtgattg ctgattccac catcggtggt gttgccgaag ctgcggcttg tgcagaaaaa
     4141 ttcaaacgtg aaaatgtcgg agcggtgatt accgtaaccc cttgctggtg ctacggttct
     4201 gaaaccattg atatggaccc acatatgccg aaagccattt ggggctttaa cggaacagaa
     4261 cgcccaggtg cagtttattt agctgctgct ttagcaggtc atagccaatt aggtttaccg
     4321 gcattctcca tttatggcac agaagtacaa gaagctgacg atcaatctat tccagacgat
     4381 gtgcgtgaaa aattactcca ctttgcccgt gccggcttag cagtggcaac cttacgagga
     4441 aaatcatatt tatctatcgg ctctgtttca atgggtattg ccggttctat cgtaaaccaa
     4501 caattcttcc aagaatattt gggtatgcgt aacgaatatg tggatatgac cgaaattaaa
     4561 cgccgtttag atcgccatat ttacgatgcc gaagaattta aattagcaat gagctgggtg
     4621 aaaacctatt gcaaagaagg tattgatgtc aacgcaccgg aaaatcaacg cagcccggaa
     4681 gagcgtgaaa aactctggga agacgtggtg aaaatgacca ttattgcccg tgatttaatg
     4741 gtgggtaatc ctcgcttagc agagctaggc tatagtgaag aagccttagg gcataatgcg
     4801 attgctgccg gtttccaagg gcaacgccaa tggacagacc atttgccaaa cggcgatttt
     4861 atggaagcta ccttgaattc gacctatgac tggaacggcg ttcgcgcacc atacattatg
     4921 gcaactgaaa acgacagctt aaatggcgtg aatatgttgt tcggtaactt attaaccggt
     4981 caggcacaaa tctttgccga tgtgcggaca tactggagcg aagactcggt agaacgtgtc
     5041 accggctggc gtccggaaag cggttttatc cacttaatca actccggctc tgcggcgtta
     5101 gacggaacag gtcagcatac cgatagagca ggcaaaccaa ctattaaacc ggcttgggaa
     5161 gtgactgaag aagacggtaa acgttgttta gaaaacacct gttggtgtcc ggcagttcac
     5221 gaatatttcc gtggtggttt atcttcccaa ttcttaacca aaggtggaat gccgtttacg
     5281 atgcaccgta tcaacctgat caaaggtatc gggccggttt tacaaattgc cgaaggttgg
     5341 tctatcgact tgccggaaaa tgtacacgac attttaaaca aacgcgccaa tgaaacctgg
     5401 ccgaccactt ggttcgtacc tcgcttaacc ggaaaaggcg catttaccga tgtgtatagc
     5461 gtaatggcga actggggtgc aaaccactgt gtggcaacct tcggacacgt tggggcagac
     5521 ttaattaccc tcgcctcaat gctccgcatt ccggtttgtg tgcacaatgt ggaagataaa
     5581 gacgtattcc gcccaagtgc gtggaacggt ttcggtcaag acaaagaagg tcaagactac
     5641 cgtgcttgtg ctaacttcgg accattatat aaataataca caatcaccct ctccccttgt
     5701 gggagaggga cagccaagca attcgttcag aattgaatgg cagggagagg gctacaagcg
     5761 gtcgcttttc tctcaaaatt tacaaatccc tctctctgat taaattgcta aacgcaattt
     5821 aatctatctc tctaaaaggg agatattagg ataagtaaag gagataacaa tgccaatttc
     5881 tcttattttc gactgtggtg ccaccaacct ccgtacgatt gcgattaatc aagcgggtga
     5941 aattgtggca gcccatcatc taccgaataa cacacaacca gatgtggaaa gcccagaatt
     6001 tcatatttgg gatattgaag agatctggtc gaaattaatg acctgtgcca aacagacgct
     6061 ttctcaactt tcagaacaac aacggcaaga gattgttggg atttcagtaa ccacctttgg
     6121 cgtggacggt gcattatttg acaaaaacgg caagcagctt tatccgatca tttcttggaa
     6181 atgcccgaga accctaccga ttatggaaaa ccttgccaat tatcttgatg ttgaggcgtt
     6241 atatcaacgt aatggcgttg gacattatag tttcaacacc ttattcaaat tattgtggtt
     6301 aaaagagaac aaaccagaaa tttatcaaca agctgagagt ttcttattca tctcatctat
     6361 tttgacttac cttcttacag gcgtgcaaac aaccgaccgc acaatggcgg gaacgtcaat
     6421 gatgacaaac atcgaaaacg attcgtggga taaaacagtt ttagatttat taggcttaac
     6481 cgaaaaccat tttcctccaa tgaaaagtgc aggagaagtt gtgggaacat taaaaggaga
     6541 aatttcccaa gagttaggtt taagcggtca aattccagta atttcttgcg gacacgatac
     6601 tcaatttgcc atttttggct caggagctgg ctataaccaa cctgtgttaa gttcaggcac
     6661 ttgggaaatt ttaatggttc gtaccccaaa agcaaaacca caatggcaat tcgttcaaaa
     6721 cggcttaacc attgagtttg atagccaatc tggttatttc aacccaggtg tgcagtgggt
     6781 agcttcaggt gtgatggagt ggtttggcaa acgtttcttc tctgatatag ccaatactga
     6841 acattactac cgcacaatga ttgaagaagc ggcagaagtg cctgctggct caaacggtgt
     6901 gaaattagtc ggcaattttg atggcacaac agctaaaaca ggttcaatta tcggcttatc
     6961 tatgcacatc actcgtggcg aaatttaccg tgcaggcttg gaatatatgg ctcatcgtct
     7021 aaaagaaggg ttagatgtat tacaagaagt cggtcatttt aatgctgaga gtttgatttg
     7081 tgtgggaggt ggttctaaaa acgctttatg gaatcaaatt cgagccgatg tcttaaatag
     7141 accgattgat gtagtggatt tccctgaaag taccgtatta ggcgcggcaa tgtttacttt
     7201 tacaggtgct ggtgtatttg aaaatccaaa tgcggctcaa caggcaatga agccaaatgt
     7261 gaaacgggtt gagccatcgt caaatagtca attttataaa taaagtttct cccctctctc
     7321 tgatttgagg ttcattcaga acatcaaatc agagagaggg taaaaaagga gttcaaaatg
     7381 ttaaaaggta ttcacccggc aatttctcca gatttattaa aagtcttagc cgaaatgggg
     7441 cacggcgatg aattagtgct ttctgatgca cacttccctg ctcactctat tcatcaaaac
     7501 gtcattcgtg cagatggctt aagtgttgcc accttattag aaggcatttc tgctctgttt
     7561 gaatttgacc aatacgttga agccccactt gcaatgatgc aagcagtaaa aggcgacacg
     7621 ctcgatccaa gcgttgaaga gcgttacctc aatgcaatta aaaaagtaaa cggaacagcc
     7681 ccgaaaatag agcgtgtaga acgcttcgct ttctatgata gagccaaaaa cgcttatgcc
     7741 gttgtcatta caggcgagtt agccaaatac ggcaacatta ttatcaaaaa aggcgtaaca
     7801 ccggtttaat tacaagcggt taaaaaagca gaatttttta caaatataaa attaaaagga
     7861 gttcaacaat ggacagaaaa atactggcga gacaaatcat tgatacttgt cttgaaatga
     7921 cccgaattgg gttaaatcaa ggtacagcag gcaatgtgag cgtacgttat aaagacggta
     7981 tgctcattac gccaacaggt acaccttatg agcaaatgac cgaagattct atcgtctttg
     8041 ttgatggcaa cggcaaacac gaagagggaa aactcccttc aagtgagtgg cagttccatt
     8101 tagcggttta tgaggctcgc cctgaattaa atgcggtagt tcacaaccac gctaaaaact
     8161 gtgccgcagt gtctatttta ggtgaaccta tccctgccat tcactatatg atcgcctgca
     8221 ccggcactaa tcacattcct tgtgtacctt atgccccgtt cggcactcac caattagccg
     8281 actatgtacg tgaaggcatt aaacacagca aagcaatttt actcgctcac cacggcttaa
     8341 tcaccgcaga taaaaccctc gaaaaagccc tcggcatcgc ccacgaggtg gaagtgatcg
     8401 cagaatggta tttgaaactg ctcgctacag gaaaacctat cccaacgcta aacaaagaac
     8461 aaatggatat cgtactcgga aaatttaagt cctatggttc ttgggtggaa agcgaacaat
     8521 agcctgccat aaataacata caagcggtga tatttcttaa aatttttaca aacggagtgc
     8581 agtatgcaaa atgaagtaat actcacgatg aaaaacatca gtaaatcctt tgcgggggtc
     8641 aatgcgttaa aaggtgttga gcttacgctg cgtaagggcg aagttcacgc attaatgggc
     8701 gaaaacggtg caggtaaatc caccttgatg aaatgcttgc tgggcgtata tcaagccgat
     8761 gaaggtgaaa tcatatataa aggtcagcct gttcgctttg agtcggtatt agaggcacaa
     8821 aaagcgggca ttagtatgat tttccaagaa ctgaacctca ttccccattt aacggtggca
     8881 gagaatattt tcttcgcccg tgagccactc aaacacggtt tagtggataa agacaaaatg
     8941 gtggaagaat cggctaaatt gctgaatttc tttgagattg atgttgatcc aaacgatgaa
     9001 gtgagaatgt tgtcggtagc caaacaacag atggtagaaa ttgccaaagc cctttcattt
     9061 gatgtggaag tactgattat ggacgagccg acctccgctc ttaccgaaaa agagatcgat
     9121 aaattatttg aattggtcga tagactgcgt gccaaagggg tgagcattgt ctatatttct
     9181 caccgaatgg aagaattaaa acgtatctgt aaccatatta cgattttccg tgatggcacc
     9241 tatgtatcta accataaatt caatgaaatc acgatggatg agatcattac caaaatggtt
     9301 gggcgttcat tggataacca tttcccacca aaaaccgctg tggtgacaaa cgacattatc
     9361 ctctcgatta tgaatgctga acgtaaggga gtgtttgaac cattgaactt tgacttacgc
     9421 aaaggagaaa ttctgggcat taccggcttg gttggagcaa aacgtactga actggctcga
     9481 gccatcttcg gagcagaccc acttgatagc ggtgagattt ttgtgcacga gaacaaagtc
     9541 agcattaaag atccgagtga tgcaattaaa gccggtatag cctatttgtc ggaagaccgt
     9601 aagctcaatg gtgttgcagt aagaatgtcg attcgtgaga atatcacgat ggcatctatg
     9661 gataaagttg ccaatcaaat aggtgtgatt tcttacgatg aagaagaaaa agcctcaaaa
     9721 actttcatcg acaaaatgga aatcaaaacc ccaacgattg agcagaaagt tcaaaactta
     9781 agtggtggta accaacaaaa agtggtaatt ggtaaatggt tattccgtga agcaaaagtg
     9841 atgatttttg atgagccgac tcggggaatt gatgtcggag caaaatatgc tatctatcaa
     9901 ctgctcgatg agcttgctgc caatggcgtg ggtgttatcg tgatctcttc cgaattgcct
     9961 gaagtcttgg gagtttccga ccgcatcatt gtaatgcgtg aaggtagaat gacaggtatg
    10021 ctcgagacta aaaaaaccaa ccaagaagaa attatgcatt atgcaactgg tgttaaaaat
    10081 atgtttgctc gtgaatatgg ggtggaaaaa tgaatgaaaa acaaaaagaa atgttaagaa
    10141 aaatggctgc attggctggc ttagtactat taatcatctt tttcagcgta accaatgaat
    10201 acttctttac ctccaataac attatgacag tagggctaca aacctctacc attgcgttaa
    10261 ttggtattgg ggcaacctgt gtgatcttaa ccggtggaat tgatttaagt accggttcag
    10321 tagttgcact ctccggtgtg gcagctgcaa tgattgtaaa tgccggtgta cccgtaccac
    10381 taggaatgat tttagggatt ttggtcggcg gtatttgtgg cttaatcaac ggcattttag
    10441 tcaccagaat gaaattgcct ccgtttattg ctaccctcgg tatgatgatg gttgcccgtg
    10501 gtttagcatt gtatgttacc aatgccgcac cagtttccgg aatgcctgaa tcctttgcca
    10561 atctcggtaa cggagcatta tttaaaattg tggaagaagg ggcaaacggc ttgccgaaag
    10621 tggtatttgc aggtattcct taccctgtga ttattatgat ctttattacc gtactattca
    10681 ctttcgctct ctctaaactg aaagtcggac gctatcttta cgcaattggt tctaacgaag
    10741 aagccgcacg cttatccggc attaaaacca atattgtcaa aatctatgcc tatgttgcca
    10801 gtggcttact ctctggttta actggcgtta tccttgcctc ccgcctcgtc accgcccagc
    10861 caaacggtgg ggtctcttac gagctggatg cgattgccag tgctgtggtg ggcggcacat
    10921 cgcttatggg cggtgtgggt actatccccg gcacactcat cgggtcattc attatcgggg
    10981 tactccgtaa tggtttgaat atgaatggcg tttcttcatt tgttcaaatg attgtcatcg
    11041 ggcttgtgat tatcgtggcg gtctctctcg accagctccg ccaatccaaa aaagccggta
    11101 aaaaataatc cactcttaaa ggagaattaa aatgaaaaaa tcagcattat ttactgcgac
    11161 cctctttggt ttatcgacct tatttgcagg cagtgcaatg gcaaaatctg atgaaatcgc
    11221 tgtgattgtg aaatctgcca actctacctt ctggcaaaac gtgcgtaaag gggctgaaac
    11281 tgccggcaaa gatattggag gacaatacaa agtcaccttc caagggccgg aagccgaaac
    11341 agcgattgac gcccaagtga atatggtgga caacgccgta aaccgtggcg tggcaggcat
    11401 cgtactggct gcctcagacc cggtagcatt agtgccggcg gtgaaaaaag cttatgagag
    11461 tggcattccg gtggtgctta tcgattccgg catcaacagt gacggcaaat actaccaatc
    11521 tttccttgcc accgacaacc gtgcagcagg taaattagca gcggaaaaac tgcttgccaa
    11581 agtcaaaggc ggcaaagtgg cagtgatgag ctttacccaa ggggcagcat cagcgattga
    11641 gcgtaccggt ggttttattg acgaaatcaa agcaaaagcc gattacaaac tggtcggccc
    11701 gtactactcc gattcggata tgaccaaagc gttaaaccaa accgaagacg tattaggttc
    11761 taaccctgat cttgcagcga tcttcggggc gaacgaaccg actgcggtag gaatggcacg
    11821 agcggtgaaa caaaaaggct ttgccggcaa aattgtagcg gtgggctttg atggaaactc
    11881 cgacctacaa aacttcgtgc gtgacggaac actagacggc atcgtggtgc aatcttccta
    11941 ccaaatgggc tataaaggcg tggacaccat cggcaagctg attaaaggcg agaaagtcga
    12001 aaaagtgatt gataccgggg tggtttatgt cacgaaagaa aacattgata gcgaagaagc
    12061 gaaaggtgtt ctttactaac attcaagtta aacggggtgg ggttgcccac cctttcagcc
    12121 gaaaggaagc caatatgtca aataccctta ccgataaagc cttagtggtg attgccgcac
    12181 ttggcggtcg agaaaatatt gtcgatgttt acgcctgtat tacccgccta cgtgtggagg
    12241 tgaaaaatac cgacattgtg gaatgggata aaattaaatc tgtcggtgcg ttaggcgttg
    12301 tgacctcagg ctcagttatt caatctattt ttggtagcga tgccgaagcc taccgtgatg
    12361 aaatcaaacg tattttgaat atttagccta agcacactca caacaaaaga atcgcaacaa
    12421 gcggtgaaat ttttatcaaa atttgcaaaa aaatgacgta atttgaccgc ttgcaagtta
    12481 atcgaattgt ttaactttta agaaggaaaa tagtatggca aatcgtctta tcctcaatga
    12541 aaccagttac cacggcaaag gagcaatcca aaatattgtt cacgaagtga ccagccggag
    12601 tttcaaaaaa gcccttgtgg taacagacaa agacctgatc aaatttaacg ttgcccaaaa
    12661 agtcaccgcc ttgcttgatg ccgcaggctt gccttatgag attttcgatg aggtcaaagc
    12721 caacccggca gtcgatgtga tcaaagcggg ggtcgcaaaa ttcaaagcct ccagtgccga
    12781 ttatttaatt gcgattggtg gcggctcacc gattgatagt gccaaagcga ttggtattat
    12841 catcaataac cctgagttta gcgatgtact ttcattggaa ggtgtcgccc caacccacca
    12901 aaaatgtgtg ccgattatcg ccattccaac taccgcaggt acagccgcag aagtcacgat
    12961 taactatgtc attaccgatg aagcgaaaaa acgcaaattt gtgtgcgtgg acgttcacga
    13021 tgtgccggca gtggcgttag tcgatccaga tatgatggaa tctatgccga aaagcttggc
    13081 tgccgcaacc ggtatggacg ctctcaccca cgccattgaa ggctacatta ccaaagcggc
    13141 gtgggaatta accgatgctc tacaccttaa agcgattgag ctgatcggcc gttcattgcg
    13201 tggtgcagtg gagaaaaatc cgaaagatgt cgaggcaatg gcattgggac aatatgtggc
    13261 tggaatgggc ttctccaacg ttgggcttgg cgcggttcac agtatggcac acccgctttc
    13321 tgcctattac gacaccccac acggcattgc caacgcagta ttactgccgt atgtgatgga
    13381 atttaataaa aattacaccg gcgaaaaata ccgtgaaatt gcccgagcaa tgggggtaaa
    13441 aggcgtagat gaaatgagcc aagaagagta ccgcaacgcc gccattgctg ccgtacaaca
    13501 gctttcacaa gatgtcggca ttccgccaaa actgcatcaa atcggcgtta aagaagccga
    13561 tttagcggca ttatcggtcg atgcctttaa tgatgtctgc accggtggca acccgagaga
    13621 ttgtacggct gaggagctgt tggaggtata tcggatcgca tactaagttc tatctttgtt
    13681 aaatagacaa gcggtgattt tttaataaaa atttgcaatt tctgttaaaa aaatactgat
    13741 agtcataatg cccgatttct catatttatg gaaaaatcgg gcattttcgt tgctttttta
    13801 tcgccaagaa atgtgatttt gttcacattt atatctataa attaacaaaa ataaaacaat
    13861 ttgtttgcaa aggcggttca gttaccgaat gatagtcatc aacttccact gtggataaaa
    13921 aaggagcaac tcatggtgaa acaacataaa atgtatatta atggtgaatt tgtgcctgcg
    13981 ttagatggtc gcactttagc agtctataac cctgccaccg aaaaagctat ctccgaagtc
    14041 cctcgtggcg gagctgatga tgccaaaatc gctatcgatg ctgctgaagc cgcccaagaa
    14101 gcttgggaac gtttaccagc gattgaacga ggaaaatatt tacgtcaaat tgctgtgggg
    14161 attcgtgagc gtgccgatga aattgctcgc actatttccg aagaaatggg taaaactctg
    14221 tccttagcaa ccgttgaggt acattttacc gctgactact tagactatat ggcagaatgg
    14281 gcgagacgtt atgaagggga aattatccaa agtgatcgcc caaatgaaca tattttccta
    14341 tacaaaaaag cgattggcgt caccaccggc attttacctt ggaacttccc gttcttcctc
    14401 attgcccgta aagcggctcc ggcattagta acaggtaata ctattgtgat taaaccgagt
    14461 gaagatgcac ctaataatgc gattctcttt tcggaaatcg tgcatcaagt cggtttacct
    14521 aagggggtat ttaatgtcgt caccggctat ggcaatgaag tcgggccgga actttcaggc
    14581 aatgaaaaaa tcggtatggt ttcctttacc ggtagccagt ttgccggaca aaaagtgatg
    14641 gaagccgcca gcaagaatat cattaaagtc aatttggaat tgggcggaaa agcaccggct
    14701 atcgtattag acgatgcaga tcttgagctt gctgctaccg ctgtagtaaa ttctcgaatc
    14761 atcaattcag gacaggtttg taactgtgca gaacgcattt atgtacagag ttcaattaaa
    14821 gagcaatttg tccaaaaatt ggtagagaaa atgcaagcgg tgaaatatgg taatccatta
    14881 gaacaacaag acattgatat ggggccgatg gtaaatgaaa aaggcttgca taaagtgcag
    14941 gaaatggtga cacacgcact gcatcaagga ggtaatctgg tattaggtgg taacgtggtt
    15001 gaaggaacag gctactactt tgagccaact attatcgaca atgtagataa ctctatggat
    15061 attatgcgtc acgaaatttt tggtccggtc attccggttg cgacatttga taccattgat
    15121 gaagcgattc gcttagccaa tgattgtgaa tatggcttaa cctcttcggt ttacacgcaa
    15181 aatatcaata aagcgatgaa agtaatttcc cgcttaaaat tcggagaaac ttatgtaaac
    15241 cgtgaaaact ttgaagcaat gcaaggctac cacgccggtt ggcgtaaatc gggtattggc
    15301 ggtgctgacg gtaagcacgg cttagaggaa tacctacaaa ctcaggtggt ttatctgcaa
    15361 tttgatgata aagtatagat tcttctaaaa actcccactt atcaaaataa gcgggagttt
    15421 tcttttaggt taaccttgta tca
//
LOCUS       DANLXK010000060        15350 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.060, whole genome shotgun sequence.
ACCESSION   DANLXK010000060 DANLXK010000000
VERSION     DANLXK010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15350
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            40..846
                     /locus_tag="PXD88_001482"
     CDS             40..846
                     /locus_tag="PXD88_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005726415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL6281056.1"
                     /translation="MALAVAACGNLSKVSDEGTTENPVFPKISESEFNHDGSQFGSWP
                     NWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRENGVHKICQFKILFD
                     KNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVVDNVAQQLKASKAQQ
                     VKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVGYGKANQVKACDGET
                     GQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTPAYDGSK"
     gene            934..1752
                     /locus_tag="PXD88_001483"
     CDS             934..1752
                     /locus_tag="PXD88_001483"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL6281057.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            1755..3446
                     /gene="narQ"
                     /locus_tag="PXD88_001484"
     CDS             1755..3446
                     /gene="narQ"
                     /locus_tag="PXD88_001484"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL6281058.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            3497..4015
                     /locus_tag="PXD88_001485"
     CDS             3497..4015
                     /locus_tag="PXD88_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL6281059.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            4058..4657
                     /gene="rdgB"
                     /locus_tag="PXD88_001486"
     CDS             4058..4657
                     /gene="rdgB"
                     /locus_tag="PXD88_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL6281060.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            4654..4974
                     /locus_tag="PXD88_001487"
     CDS             4654..4974
                     /locus_tag="PXD88_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL6281061.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            4978..5430
                     /locus_tag="PXD88_001488"
     CDS             4978..5430
                     /locus_tag="PXD88_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL6281062.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(5471..6052)
                     /gene="lpcA"
                     /locus_tag="PXD88_001489"
     CDS             complement(5471..6052)
                     /gene="lpcA"
                     /locus_tag="PXD88_001489"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL6281063.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            6361..7320
                     /locus_tag="PXD88_001490"
     CDS             6361..7320
                     /locus_tag="PXD88_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL6281064.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            7313..9064
                     /locus_tag="PXD88_001491"
     CDS             7313..9064
                     /locus_tag="PXD88_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6281065.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            9067..10032
                     /locus_tag="PXD88_001492"
     CDS             9067..10032
                     /locus_tag="PXD88_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6281066.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            10019..10912
                     /locus_tag="PXD88_001493"
     CDS             10019..10912
                     /locus_tag="PXD88_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL6281067.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            10983..12035
                     /locus_tag="PXD88_001494"
     CDS             10983..12035
                     /locus_tag="PXD88_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6281068.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(12044..12274)
                     /locus_tag="PXD88_001495"
     CDS             complement(12044..12274)
                     /locus_tag="PXD88_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL6281069.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            12404..13486
                     /gene="leuB"
                     /locus_tag="PXD88_001496"
     CDS             12404..13486
                     /gene="leuB"
                     /locus_tag="PXD88_001496"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL6281070.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(13573..13968)
                     /gene="msrB"
                     /locus_tag="PXD88_001497"
     CDS             complement(13573..13968)
                     /gene="msrB"
                     /locus_tag="PXD88_001497"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL6281071.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            14193..15197
                     /gene="gap"
                     /locus_tag="PXD88_001498"
     CDS             14193..15197
                     /gene="gap"
                     /locus_tag="PXD88_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL6281072.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         4825 a         2633 c         3275 g         4617 t
ORIGIN      
        1 gaaaaaaaag cccttttccg tggattttta ttatcgacag tggcattagc agtggctgct
       61 tgtggtaact taagtaaagt gagtgatgaa ggaacaactg aaaacccggt attcccgaaa
      121 atctcagaat ctgaatttaa ccacgatggt tcacaatttg gttcatggcc aaactgggaa
      181 aacgttcgtc aaattgaaaa agggatgaac aaagatcaat tatataatct aattggtcgt
      241 cctcattttg aagaaggctt atatggtgtt cgtgaatggg actatgcatt caattaccgt
      301 gaaaatggcg tacataaaat ttgccaattt aaaattttat tcgataaaaa tatgaatgca
      361 caaagtttct tctggtatcc aaatggatgt aatggaaact catcatttgc tttaactggc
      421 gatttcttat tcgatttcga taaagcgact ttaactacaa aaggtaaaga agttgttgat
      481 aatgttgctc aacaattaaa agcatctaaa gcacaacaag ttaaagtagc aggctataca
      541 gaccgtttag gctctgctgc ttataactta gacttatcac agcgtcgttc taatacagtt
      601 aaagctcgtt tagtacaaca aggcgttaca gcacaaattg aagcggtagg ttatggtaaa
      661 gcgaatcaag taaaagcttg tgatggtgaa actggtcaag cattaaaaga ttgtttacgc
      721 cctaaccgtc gtgttgaaat ttctgcaaat tgtggtgtaa tgaaacaaaa tgaaggtggc
      781 aatgttgcag gtcctaatgg tccggctcca ctttatcaaa ccccagcata tgatggcagt
      841 aaataatttc tagttttgac taacttagag tagaatatta aggcaaccaa atggttgcct
      901 tttcttttat ctatttattt ataggggaat actatgaact accaagctat tgcatttgat
      961 ttagacggaa cactactttc atcgaacgca acaattttag aatccagtaa agaggctatt
     1021 aaaaaggtaa gagaaaaggg aattaaagtc tactttgtta ccggtaggca ccatactgcg
     1081 gttcgccctt attatgtaga actagggctg gatacgccag ttgtgtgttg caatggcact
     1141 tatgtgtatg attttaaaaa tgaaaaagta ttaagcggta atccgttatc agcagaaatt
     1201 gcttcaaaat tagttaatga tgcacaagct caagggattc atactgcggt ttattttgaa
     1261 gatgcaatga cttatgagtc tttgaatatt cacttcacta aattccaaaa atgggttgag
     1321 tcttgcgcac cagaagttcg tccgaatgtt tatcaggtag aaaatttcca acaagaaatt
     1381 gataaaggtg taaccgtatg gaaagtgctt attagcgatc cagatcttgc caaaatgcaa
     1441 aaatttgttg aaaaattacc gcctgatcaa gtaagcccgg aatggtcttg ggttgatagg
     1501 gttgatatta ccagtgttgg taacagcaaa ggggcaagat tagcggaagt attaaaaaca
     1561 gaaggtattg atttacaaaa ggtgattgcc tttggcgata atttcaatga tgtttctatg
     1621 ctagaaaccg ttggattagg cattgcaatg ggaaattcag aaccagatat tcagcaaaaa
     1681 gcgaagaaaa ctataggttc aaataatgaa gatagtattg ctaatgaatt gaaagctcaa
     1741 tttaatcttt aattatgata aaagcaaaat actctattgc taggcggata ggactctatt
     1801 ttttaattat gatcggattt gcttcgatta tcagtggaat ctcacttggt attatgtgga
     1861 gcaataaatc tgatgcgagc ctgattaatg tttcaggctc acttcgtatg caaagttatc
     1921 gattgttatc agaaatggat tcaaaaaaag cgctgctacc tgagcgattg ttggaatatc
     1981 atcgaacgct acatgctaca gagcttagtt cattaaagca aagtgtttta ttgccagata
     2041 gcgtgataga aagctatcaa caattactta aagattggta tgaaatgcaa tcttatgtcg
     2101 ctcagggaga taaagttaat tatgcttcgc acattgaaga ttatgtgcag agagttgatg
     2161 attttgtttt ccgcttacaa gagttcgctg agttaaaatt aaagattgca acaggcgtga
     2221 ttgcgattgc aatgttactg attattgccc ttgcttatat tggcgtttgg tatactcgaa
     2281 aaaagattat tggaccttta aggcaattgg taaaagcgag ttggcaaatt caaaataaag
     2341 attttgacca cgtaaaatta gcggttaatg aacccaatga attagggcta ctttcctcta
     2401 cttttactga gatgtctaat gaattattaa aattatatac ttcattagaa gataaagttc
     2461 aggataaaac acgtcgttta ttggcggtaa atcgttcttt actggtatta tatcaatgct
     2521 ctcaattatt aactgctaag ccgattaata aagaagtgtt aaatcaagta cttaaaacgg
     2581 tatttgataa tgaacatttg ctagggattg atttacaagt atatggggct gaatattgga
     2641 atgtatcaat agacaataaa ccaagtttag attgggtttc tgctgaaatt gcaatagaaa
     2701 atgaaaaatt gggtatctta agctggaaac cctcactggt ttgtcctggt gaacgattga
     2761 tccaaaatgt gtcggaaatg attggtcgta gcctttatgt agtgcagatg caaaagcaac
     2821 agcaacaatt ggtactcatg gaggagcgtg caattattgc tcgtgagtta cacgattcct
     2881 tagcccaatc tcttacgttt ttcaaaattc aggttagcct gcttaagctt gctaaaacag
     2941 atgaaaagcg taatgaaatt ttaactgtat ttgaaaaagc gttaaatgat gcttacagcc
     3001 aattaaggga gctgttgacg acgtttaggc taacgattca agaagcgaat ttacaacaag
     3061 cgttagaaaa aattttagaa agcttaagac cgaaaacctc agcacagatt cgcttaagtt
     3121 gcaaattacc ttcgcatatg tttaatgctc agcagcaagt tcacgtattg caaattgtac
     3181 gagaagctgt gattaatgct attaagcatt cgcaagccac tgaaattaat gtgattgctg
     3241 aaacaaatga tgatggtgaa cattgtttga ctattcaaga taatggcgta gggcttgctg
     3301 cccatacgca accagaaggg cattatggac tgacgattat gcaagaacgg gcggctgaac
     3361 tcaaagccga attttcgatt gaaaatgtgg aaagtggcgg agtaaaagta caggttttat
     3421 tgccgagtat gattagcaag cggtaataaa atattaattt tttgcgtatt attggcaacg
     3481 aataaaagga taacaaatgc aattccgaaa agcagtagaa gcggattttg agacaatatt
     3541 ggcaatttat aatcaagcaa ttcccactca ccaaattacc gccgatttag aactggcaac
     3601 tacgcaaaat cggcggaagt ggttcgattt tcaccttgaa acagcccaat atcctatttg
     3661 ggtggtcgaa gatgaaaaag gcattgctgg ctggtttagt ttttcaccat tttatgaaag
     3721 accggcattt ttacatactt cggaaatcag tatctattta gaccgctatt ccaaaggaaa
     3781 aggctatggc tcaaaaatta ttgagtttat gcaagctgaa atgcttaatc acaatattca
     3841 tacgttgatg gcgtatgtgt ttgaattaaa tacagtgagc caaaatctaa tgagaaaaca
     3901 cggctttgaa caatggggaa gatttccgaa tattgctaat atgggaaaag atgagaaagg
     3961 tgaggataaa tggcgaacgt tgctgatgat gtcttaccaa aaaggtatcg aataacaagc
     4021 ggtgattttt tagaatattt ttgcaaataa ggacaatatg gaaaagacaa aaattgtact
     4081 tgcaacaagt aatgcagata aagttaaaga aatggcagat gtactctcac aatttggttt
     4141 tgaggtggtg gctcaaagtg aatttgggat tgaatcaccg gaagaaaccg gtttgacttt
     4201 tgttgaaaat gcgctgatta aagcacgatt tgctgctaaa atgacaggtt taccggcgat
     4261 tgccgatgat tcaggtttat cggttatggc acttggtggt gaaccggggc tatattctgc
     4321 acgttatgcc ggagagcagg caaccgatgc cgataatcgc caaaaattac tagccaaaat
     4381 gcaagggcaa gagaatcgtc tggcgaaatt tgtcagttgt atcgtgtttt taaaacacga
     4441 aactgaccca acaccttata ttgcgtcggg tgaatgtttc ggtgaaattt tgacggaaga
     4501 aagaggtgaa aatggtttcg gctacgattc cctgtttttc tacccaccga aagcttgcac
     4561 ttttgccgaa ttagaaacca aagagaaaaa agcgatttca caccgtgcaa tcgcactaga
     4621 gcaattaaaa cagcaattag caggagagaa taaatgatta ttacaactac acctacgata
     4681 gagggtaaac aaattgtaga atacaaaggg ttagtatttg gcgaagtagt ttctggggct
     4741 aattttatcc gtgatttctt agccggtatc accgatatta ttggcggacg ttcaggtgct
     4801 tatgaaagca aattaaacgg tgcaagaaaa gaggcattag ctgaattagc taaggaggca
     4861 caaaaagtgg gggcaaatgc ggtggttggc gtttctatgg agtatcaatc aatgggcggc
     4921 gataaaggaa tgttcatcgt ggtagcgact ggtactgcgg ttgtaatacg ttaatttatg
     4981 cagtttgaac aacactttga agcaaatttc tggcagaaca aatcgctact tgaaatgaat
     5041 gatgctgaat gggaagcatt atgtgacggt tgtggtaagt gctgctaccg gaaatatatt
     5101 cagggaagag ggcggcgtga acggctttac tatacctcgg ttgcctgtaa tttattagat
     5161 gtgaatacag gccgttgtat gaattactcg aaccgtttta aaattgagtc ggattgtaca
     5221 aaattaacta aaaagaactt acctgatttt ggctggttgc caaaaacctg tgcttatcgt
     5281 ttactttatg aaggaaagcc tctttttgat tggcaccctt taatctctaa agatcctgat
     5341 tctgtaaaaa atgccggaat gctgattgct aacggtattc acgaaaaaga tgtgattgat
     5401 tggtttgagt ttgttattga tgaagtatga gaaaaaggcg tttggtgcaa acgccttttt
     5461 gttatagaga ttaggctttt tccatctcaa attcaattaa catcatcaaa atatgaatca
     5521 ctttaatgtg aatttcttgg atgcggtctg cgtaacggaa atgaggtact cggatttcca
     5581 catcggctaa tcctgccatt tgcccgccat ctttgccggt cattgcaatt actttcatgc
     5641 ctttttcttt ggcaactttg atcgcattta acacattttt agagttacca gaggttgata
     5701 gaccaaagag tacatcgcct ttttgcccaa cggcctctag ataacgagag aagacatatt
     5761 cataaccgaa gtcattactt acacagctta aatggctgac atcggaaata gcgattgccg
     5821 ggtatccggg acggttttca cggtaacgac ctgttaattc ttcggcaaag tgcatcgcat
     5881 cacagtgcga accgccatta ccgcaagaaa tcaccttacc accttgcttg aaactatttg
     5941 caatcagcat ggcggcatct tgaattaatt taatattttt ttcatcagac ataaatttgt
     6001 ctaatacatc tgcagcttct tgaagctcag ctttaatttg ttctaaatac atcatttgct
     6061 cctttgtttg caaaacgctt acctttaaac atcggcttta ccaatggggg tagcgagtaa
     6121 aaaattcgtt ttttatgacc gcttgaggca taaaaagtgc aataagttta gaagatctat
     6181 gctgtattgt aaacctaata acttaaataa tctgaatagg gttgtaaaca aaagtttcca
     6241 aaagagaaaa atagcggtat gatcgcctca caatccctct cgcattgtta actctagtag
     6301 ctaatatcag gctttaagcg tattaaacaa tgcacaaatt tgctatttat aggagactat
     6361 atggtcgtaa atccagaatc ttttgaacag ataattggac aatctgtaaa gataaaagag
     6421 gttgttgaac aagcaaaaaa atttgccaac cttgatgcac cattattgat tcaaggtgag
     6481 acgggaacag gaaaagattt atttgccaaa tcttgtcacc attttggatc tcgtcgaatg
     6541 caaaaattta ttgccgtgaa ctgtgccggt ttaccggctg aagaagcaga atcggaaatg
     6601 ttcggacatc gtggcaatgg cgttgagtcc gtcggtttct ttgaatatgc tcacggtggt
     6661 acagtattat tagactctat ttctgagtta tcgctggaaa tgcaagccaa attattgcgc
     6721 tttttaaatg atggctcttt tcgtcgagtg ggcgaagatc aagagattca agtcaatgtt
     6781 agggtgatct gtacttcatt acagcctttg tcattattag ttgaaaaagg caaagtaaga
     6841 gaagatctgt ttcatcgttt aaatgttctc actttaaatt taccaccttt gcgagatcga
     6901 aaagaggata ttccattatt agctgattac tttatcgccc aaattagcaa tcagttgggg
     6961 gtgagcaaat tagagtatga taatgttttt ttgcaagcat tgcagaatta tcactggcga
     7021 ggcaacttaa gagagcttta taacgcactt tatcgagctt gtacactttc gcatagctac
     7081 cgtttagcgg taaaagatct tcatttaccc agagatatgg aggcgatgat tgaagtacgt
     7141 gaggaggcga cacttgagga aatgatgagc cagtatgaag cccaattatt gcaccaattt
     7201 tatgcagaat atccgagtac ccgaaaatta gcacaacggc tcggactttc acatactgcg
     7261 gtggcaaaca aattgcgtca atatgggtta acaaaaaatg gaaacagtaa agatgaataa
     7321 actagcggtc attttttcag tatgttttgc aaatttaggg ctaaattcga ccgcttacgc
     7381 agcgccaagt attcctcaag agctacttga aaatagcctt gtgtattgca ctacttcatc
     7441 gggattctct tttaacccac aaaaatccga tgtgagttcg aatatgaatg tggtaacaga
     7501 gcagatctac gataaattag ttgagtttaa tccgaaaaaa aatcgactag agcctgcttt
     7561 agctgaaagt tattcaatca gcgacgatgg tttagtgatt acattacgtt taagaaaaaa
     7621 tgtcgctttt catacaactc catggtttac tccgagtcgt aaattaaacg cagaagatgt
     7681 ggtgttttcg ctaaaacgaa tgattggtaa agaaagtgat ttacctgaag tgaaaagtga
     7741 gcctgaaagt gtattacacc accagcgaca aagctatatt taccaaaaaa cagcggggca
     7801 gatttatttt ccttattttg aaagtgttga tttagcgaat aaaattgcca gcattcattc
     7861 tccgtcaaat gacattgtaa aaattgaatt agtccgtcct gattcagcat tgttggcgca
     7921 tttagccagc caatatgcag ttattctgtc taaagaatat gctttacagc tcaatgcaga
     7981 tgataactta gttcaactgg atttattacc ggtaggaaca ggcgtatatc aacttgaaag
     8041 ttatgaaaat aatgattatg tgcgtttaaa accaaatatg aattactggg gcaaaaaagc
     8101 atatattcaa aatatggtcg tagatttttc cacagaagcg accggcagga tggcaaaatt
     8161 tttaaataat gaatgtgatg tggttgcttt tccggaacct agccaattat cagtgttaaa
     8221 taatcggcag cttattagta gtaaaggtgc taatttggtt tatttagcat tcaatatgca
     8281 acggggtatt gggcaggatt tggcattacg ccaacgtatt gcacgcggca taaatcgcaa
     8341 acgtattgca gagaaattat tttatggtac aggtgaagta gcggataacc tattaccaac
     8401 agctttgtgg tcgaaaaaaa ataatggaag ctacccttat caaccacacc aaaattcagg
     8461 tgagcaagcg gttgaaatgc atgacagtat tataaatcgg tctttagata gcaaaacaga
     8521 gaccgaagaa gtaaaccaaa aacagcgctt aaaactgtgg gtaattgatg aaaaacgagt
     8581 ttataatcaa cacccattaa aaatggcaga aatgatacgt gctgatttag ctacgcaaaa
     8641 tttagaggtc gaaattcgcg cagtaagtcg agcttatttg gtgcaacagc ttgctaataa
     8701 aagtgcggat tatgatttga ttttaggtgg ttggttagca aataatcttg atcctaacag
     8761 ttttttggag gccttactca gttgtaaagc tgcggaaacg gtgactaatt tatcaaattg
     8821 gtgcaatgaa gattttgatt tttggttaca aacagcccgt ctaagtgatg atccggcatc
     8881 agctaattta ttgtatgaat ttgcacaaaa attattagaa gagcaattgc ctattctccc
     8941 tttaatgaat gctaatcgtg tattagtcat aaaagatgga gtgaaacagg cagatatttc
     9001 ccctttcggc caggtaaaat tatcagagtt acgtttgggc ttggggcata aaaaaggaaa
     9061 ctaattatgc tgattgtctt ttttcgaaaa atttttctaa ccttgattac gttgattttt
     9121 ttgtcactta tcagttttaa tattctgtta cgagatccat taaaccactt agccgagtta
     9181 ggctggtttg aggcttattg ttattatgta aaatctctgc taaatggtga ttttggtatt
     9241 agtttcagta atggagaacc gctcacagcg caaattttac aggtgttccc ggctacaatt
     9301 acgctttgtt tatcggctct cattgtttct ttaattattg gtttgcctct tggttttttt
     9361 gcggctactc agcaaaaaaa tatggttggg cgattattaa atacactagg ttcattgagt
     9421 ttagccgtgc cggtattttg gctggcatta gtgctaatgt attacgcttc tctcaatcag
     9481 tgggaagtgt cagcaattgg agaaatccat tcgctttatc cgaaacagat ggtaaccggc
     9541 tttttgctat tagatatttg gttatctgat gtaccttata aattaaaaat gatgcagagt
     9601 gctttacatc acttagcttt gccgacatta gtcttggctg tgccagctac attagaagtt
     9661 atgcatatta ctcaagctag agcaggttat gtaatgaaac aaaattacat taaaatagcg
     9721 aaaacgcgtg gctggacacc gtttagagtt tggagaacgc atattatttg taatacttta
     9781 cctgcattat tacctatgat tgcccgtacc tttattttaa tttttgcctt cggtatgtta
     9841 attgagaaca tatttagctg gggaggaatt ggacgttggc tgataaatgc ccttgctatt
     9901 caagactata atgcgatttc agcgggagta gttgcaatcg gggtgtttgt gttattagta
     9961 gatatggtta caggctttgt gcgggtgatg ttagacccat cagataaaaa ggattggtat
    10021 ggcagttatt aaagaacccg agcaatttag agaaaccaac gcatttaagg cattttggtt
    10081 tcatttccga caagataaac ttgcacttgg cagtttttat ctttttttgc tattactggc
    10141 tctcattttt gttggtagtt tgcttgctcc ttacaattat aatgaacaat ttgttggttt
    10201 agaattaatg cctccctctt gggacgacaa aggtcaaatc agccattttt taggcactga
    10261 cgatttagga cgggatattt taagccgtat tatgtatggt ttttactaca cgcttggttc
    10321 cgcactgatg attaccttat taattgcgat tatcggcggt atgatcggga tttatgccgg
    10381 gctgaaaaaa ggacgttcat tttggttgat tagccatttg ttcgatacct ttttatttat
    10441 gccgatttta ttgattgcga tcatcattgc aaccttaatg gaagcgagtt tggtcaatgc
    10501 aatgttggcg attttcttag cgatgttgcc gcattttatc cataaaattt atcaagcaac
    10561 cgaaaaacaa ctcaaaaaag agtacatcat taccttaaag ctagacggtg caagctgctg
    10621 gtatttaatt cgagaagtga ttattcctaa tcttaccggc gtggcaatta aagcactttc
    10681 acatattttt gtgatcgcca tattagatat tagtgcgtta agttttatta tgctgggggc
    10741 taaaagcccg acccctgaat ggggagcgat gattcgtgaa tccatggaac tgatttatat
    10801 agctccttgg acggtgatat tacctggctt agcaattatt tttagtattt ttaccgttac
    10861 aatacttggt acacgcttaa gcgtgatttt tgaaaaatac cgtaaagaat agtatttaaa
    10921 taggatactg acacataaca agcggtcatt tttaagtaaa attttacaga ttaaggaata
    10981 gtatggcatt acttgatatt cgccatttaa gtattgaaat tgatatgcca aaaggcagag
    11041 taaaaatggt ggataacatc aacctgactg ttgatgaggg cgaaatttgt ggcttggtgg
    11101 gagaatctgg ttcgggaaaa agcctcatag ccaaagtgat ttgcggtatg attaaagatg
    11161 aatggattgt gagtgcagat cgctttcgct ttgacgatat tgaattactg aaactttcgc
    11221 cagcggaacg ccgaaaattg gtaggcgatc atatttcaat ggtattccaa gatccgctta
    11281 ctagccttga cccaagccag caaattggta aacaactgat gcaaaccatt caatttagag
    11341 ggaagtggtg gcaacgattt gggtggaaaa agaaaaaagc aatcgagcta ctacaccgtg
    11401 ttggtattcg tgatcatcaa gatattatga aaagttaccc aagcgatatt accgaaggcg
    11461 aagctcagaa agtgatgatt gcaatggcgg tggcaaatca gccccgatta ttggtggcag
    11521 atgagccgac taatattatg gaatcaacca cgcagttgca ggtttatcgc ttgctttcca
    11581 gtatgaatca gaatttggga acctcaatct tgctggtgag taatgacatg cgtagcattc
    11641 aaaattgggt tgattcttac aatgtgcttt attgtggaca aaccgttgaa attgcggata
    11701 aagagagcat tcttgaatcg tcttaccacc cctatactcg agtgttactc aatagttcgc
    11761 cggacttttc tcagccttta gcctttaaaa gtagcttaaa tacgctacga ggctcagtcc
    11821 cgatgttaca agaaatgccg attggttgtc gtttaggccc tcgttgccct tttgcacaaa
    11881 aaaaatgtat caacaaaccg ccattagtga aagtaaaaca gcacgagttt gcctgccatt
    11941 ttccgattaa ctttagagaa caaaatttgc ttaaaaataa aacggaaaat acgccgtttg
    12001 tggtggctga aatagcggaa aaagaggcgt tttaatgtgg ttattattgg ctaagtgtaa
    12061 cgggtaacat taaagtatct aatacgaaac tcaagggtaa atcgatcacc gcaagcaccg
    12121 cgaatatacc gccttcttgc attacttgga aatcttttat tacgccggca taaacacggt
    12181 aatcctgttc aaccaagctt agtactgtgc cacaagcggt gaggttaaac atcaaataga
    12241 gtagaaaaac gagtttacaa gcggtcaatt tcatcaaaaa atctccaaat acgcttttat
    12301 tttacgctat ttttatcggg ttggcgtaaa attcgtttta aaaacagcta ttttcaggca
    12361 gaatgtagcc gaatcgacat taaatatact aagaggatct tatatgcaaa cttacaacat
    12421 tgcagtgctt gccggtgacg gcattgggcc ggaagtgatg gcagaagcta tcaaagtgct
    12481 tgaagcgact caacaaaaat ttggctttaa actaaatttt aatcaatata acattggtgg
    12541 agcagcgatt gatgctcaag gtaaagcgtt acccgaaaat accttaaaag gctgtgaaga
    12601 ggcagatgcg attttgtttg gctcggtagg tggcccgaaa tggacgcatt tactacctga
    12661 tgagcaacct gaacgaggtt cgctattacc actgcgtaaa catttctcgc tattctgtaa
    12721 tttacgccct gctgcattgt atcaagggct ggaaaaattc tgcccattac gtgccgatat
    12781 tgctgctaaa ggttttgata tggtggtggt gcgtgaatta accggcggga tttattttgg
    12841 acagccgaaa ggccgtgatg gtgaaggtgc gcaaacgaga gcgtttgaca ccgaagtata
    12901 ctacaaatat gaaatcgagc gtattacccg tgtggcgttt gaatctgcaa tgaaacgtaa
    12961 aaaacacgta acctctgtgg ataaagccaa tgtgttacaa agctcgattt tatggcgtga
    13021 aaccgtcacg gaagtagcta aagagttccc agaagtcacg cttgagcata tgtatattga
    13081 taatgcgaca atgcagctaa tcaaagcacc tgaatcgttc gatattttat tatgctcaaa
    13141 catcttcggc gatattattt ccgatgaggc tgcaatgatt acaggttcta tgggcatgtt
    13201 gccttcagcc agcctcaatg agcaaggttt cggcttatat gaaccggcag gcggttcagc
    13261 accggatatt gccggtaaaa atattgcgaa tccgattgcg caaattttat cagccgcaat
    13321 gatgttgcgt tatagcttta acttaggtga tgctgctgat gcgattgaaa cagcgatcca
    13381 aaaagccctt gctgatggct accgtaccgc tgatttagct gatgacagca aaccgctttc
    13441 tacctcagaa atgggcgata ttattgcgaa aaatattctc gcttaaggct agaagttaaa
    13501 tagcacaagc ggtcattatt cgccaaattt ttgcaaattt tccgctaata atgaccgctt
    13561 gtttattact cgttagccgt caatctcttc gcctgtttct tcccacttaa aattcaatgc
    13621 cgcagagttg aggcaaaaac gcaaccctgt tggtggtggg ccgtccggaa aaacgtgtcc
    13681 catatgcgaa tcacaattcc cacaacgaat ttcgatacga tgacgtccta aactgtaatc
    13741 atctaagtaa cgtagtgacg attctgaaat cgtttggtaa aaacttggcc agccacaacc
    13801 ggcatcaaat ttagtatctg agtgaaataa atcgttatgg catctggcac aacgataaat
    13861 tcctacccga tgttcattca aaaattttcc ggtaaacgga cgttccgtac cgtggttgat
    13921 taaaatatca acttgttgtt ctgtcagggc gtgaataggt ttaatcatca gcaattctcc
    13981 taagatagta gcgaagtcat tgtagctttt tttgacctga aaatcgttat aaatttcaaa
    14041 atttgacata gatcacaaaa aatttatctg ttatattgga agggttcttt tggcttgtca
    14101 ggaaagtgaa aagatgtgct ataattcaag catctttagt gtagtacata aagaacaaat
    14161 tttgtttaac tttaatatag gtagaaaaat ctatggcaat taaaattggt attaacggct
    14221 ttggccgtat cggtcgtatc gttttccgtg cagcacaaca ccgtgatgac atcgaagtgg
    14281 taggtatcaa cgacttaatc gatgttgatt atatggctta tatgctgaaa tatgattcaa
    14341 ctcacggtcg ttttgacggt actgttgaag ttaaagacgg tcaattagta gttaacggta
    14401 aagcgatccg cgtaacagct gagcgtgacc cggctaactt aaaatggaat gagatcggtg
    14461 ttgatatcgc agttgaagca acaggtttat tcttagatga tgaaactgct cgcaaacaca
    14521 tcaccgcagg tgcgaagaaa gttgttttaa ccggtccgtc taaagatgca acacctatgt
    14581 tcgtaaacgg cgtaaacttt gatacttacg caggtcaaga catcgtgtct aacgcttctt
    14641 gtacaactaa ctgtttagca ccattagcga aagttattca cgaaaaattc ggtatcaaag
    14701 aaggtttaat gacaactgtt cacgcaacta ctgcaacgca aaaaacagta gatggtccat
    14761 cagcgaaaga ctggcgtggt ggtcgtggcg cgtcacaaaa catcattcct tcatcaacag
    14821 gtgcagcgaa agcagtaggt aaggtattac ctgcattaaa cggtaaatta accggtatgg
    14881 ctttccgtgt tccaaccact aacgtttctg ttgttgattt aactgtaaac ttagaaaaac
    14941 cagcaactta tgcagaaatc tgtgctgaaa tcaaacgtgc ttcagaaaac gaaatgaaag
    15001 gcgtattagg ctacacagaa gatgcagttg tttcaacaga cttcaatggt gcaactgaaa
    15061 cttcagtatt tgatgcagca gcaggtatcg cattaactga tactttcgtt aaattagtat
    15121 cttggtacga taacgaagtt ggctactcaa acaaagtatt agacttagtt gctcacgtat
    15181 ataactacaa aggttaattg ctaagttata ttttaaatat agagccaaat tctgaacgga
    15241 atttggctct tttgctgcga acaataaatt gaatatagtc gcgttttccc ataaaatcaa
    15301 tttcctacaa acaggaacta agcacagtaa ggcagatttt cttgctcttt
//
LOCUS       DANLXK010000061        15054 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.061, whole genome shotgun sequence.
ACCESSION   DANLXK010000061 DANLXK010000000
VERSION     DANLXK010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15054
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            1..170
                     /locus_tag="PXD88_001499"
                     /pseudo
     CDS             1..170
                     /locus_tag="PXD88_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            422..1612
                     /locus_tag="PXD88_001500"
     CDS             422..1612
                     /locus_tag="PXD88_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL6281073.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            1687..3198
                     /gene="nhaC"
                     /locus_tag="PXD88_001501"
     CDS             1687..3198
                     /gene="nhaC"
                     /locus_tag="PXD88_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL6281074.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            3315..6914
                     /gene="putA"
                     /locus_tag="PXD88_001502"
     CDS             3315..6914
                     /gene="putA"
                     /locus_tag="PXD88_001502"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL6281075.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            7023..7673
                     /locus_tag="PXD88_001503"
     CDS             7023..7673
                     /locus_tag="PXD88_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL6281076.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDLKSQIFLLKQLVKGGLG"
     gene            complement(7674..8561)
                     /locus_tag="PXD88_001504"
     CDS             complement(7674..8561)
                     /locus_tag="PXD88_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL6281077.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(8587..8732)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(8909..9919)
                     /gene="mglC"
                     /locus_tag="PXD88_001505"
     CDS             complement(8909..9919)
                     /gene="mglC"
                     /locus_tag="PXD88_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL6281078.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(9933..11432)
                     /gene="mglA"
                     /locus_tag="PXD88_001506"
     CDS             complement(9933..11432)
                     /gene="mglA"
                     /locus_tag="PXD88_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL6281079.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(11504..12493)
                     /gene="mglB"
                     /locus_tag="PXD88_001507"
     CDS             complement(11504..12493)
                     /gene="mglB"
                     /locus_tag="PXD88_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL6281080.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEDVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
     gene            complement(12768..13760)
                     /gene="mglB"
                     /locus_tag="PXD88_001508"
     CDS             complement(12768..13760)
                     /gene="mglB"
                     /locus_tag="PXD88_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL6281081.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
     gene            complement(13845..14258)
                     /locus_tag="PXD88_001509"
     CDS             complement(13845..14258)
                     /locus_tag="PXD88_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL6281082.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            14378..14665
                     /locus_tag="PXD88_001510"
     CDS             14378..14665
                     /locus_tag="PXD88_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6281083.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            complement(14711..>15054)
                     /locus_tag="PXD88_001511"
     CDS             complement(14711..>15054)
                     /locus_tag="PXD88_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL6281084.1"
                     /translation="SVCDELVTINEKIVNLTYGDQDALNIYFKGGWGALPIEYNYQVD
                     AILELVLRREQEELARKNGYLDVIPKIIHYTSKFKPWKKELHTMQISTRKKYWFYYHL
                     EWNDILEQHQK"
BASE COUNT         4414 a         3196 c         3074 g         4370 t
ORIGIN      
        1 gaattgagaa tttttggagc caagcaaaac gccatttgcg taaatttaac ggcataccta
       61 aagctcattt tgagctgtat ttgaaggaat gcgaatagcg ttttaatcac agtgacttaa
      121 aatctcaaat ttccatttta aaacaattgg ttaggggttg tttaagttag ttatctagga
      181 cagccctaaa ttttgtagtt ggaatttcaa cggagaaagt tatctataaa cttacaaaag
      241 ttatagaaaa tggaggcatt tttgcttaaa gtatgctatc tattcatatt aattgcatag
      301 ttaatcaaca actgaagaaa aattagaagt agatcataaa atcaacaaaa agtccgtgct
      361 ttttagctaa agattgttaa actcttttgt gttacaagtt tttaacataa aggagttttt
      421 tatgtctact tctcaacaac tcatccaaca aaccgaacat ttcggtgcca ataactacct
      481 acctctacct attgttatta gtaaagctaa aggcatttgg gttgaagatc ctgagggtaa
      541 tcgctatttg gatatgctta gtgcctactc agcggttaat caagggcatt gtcatccaaa
      601 aattgtacag gcactaaaag atcaagcaga caaagtaacg ctgacctctc gagcatttta
      661 taacgatcaa cttggtattt ggtatgaaaa aatctgcaaa ctcgctaata aagagatggc
      721 attaccgatg aatacgggtg cagaagcggt agaaacagcg attaaaactg ctcgccgttg
      781 gggttatgat gtgaaaggaa ttgcagaaaa tcaagcagaa atcatcgctt gtgttggcaa
      841 ttttcacgga cgaacaatgg ctgcagtatc tctctcgtct gatccggatt ataaacgtgg
      901 tttcgggccg atgttaggtg gcatcaaact tgttccatac ggtgatttag aagcattaaa
      961 agctgcgatt acaccaaaca cagcagcgtt tttggttgag ccaatccaag gtgaatctgg
     1021 cattcttatt ccacctgaag gtttcttgga acaggcttat gaactatgca aagagaataa
     1081 tgtgctgttt attgctgatg aaattcaggc aggtcttggg cgtactggca agttatttgc
     1141 aacagaatgg gaaggctttg agccagatat ttatattcta ggtaaagcac ttggtggcgg
     1201 ggtgttccca atctcttgtg tgttagcaaa tcgtgatatt ttaggcgtat tcaatcctgg
     1261 ctcgcacggt tcgacatttg gtggtaatcc attagcctgt gcggtatcta ttgcctcaat
     1321 tgatgtactg ttggaagaaa aacttgcaga gcgttcccgt gagttaggtg aatacttctt
     1381 ggcagagctg aaaaaaatcc aaaatccaat tattaaagaa gttcgtggac gtggactgtt
     1441 tattggcttg gagttacatc aaccagcacg cccattctgc gaaaaactca aagaaaaagg
     1501 cttactctgc aaagagaccc acgatacagt tatccgcttt gctccccctt tggtgattga
     1561 aaaattcaat ttggattggg cattggagaa aattcgggag gtgttggctt aattgtcatt
     1621 ttctctatat tttatcctgc caaatcgcct ttaacccttt ttggcaggaa gcaaaacagt
     1681 tgtaaaatgc tgattttgca aactttttcc aaaaatcaac cgcttgtaaa aggtggcttt
     1741 atgtcaaaca gaacagaaat aacagaccaa aatatccgaa tcccgtttcg ctatgctata
     1801 ttgcctgtga ttattatggt atcgattatg gcggtggcta tcatcaaatt tgaagcctca
     1861 cctcacgttc cgttgcttat tggggcaatt agtgccgctg tgattgcaat ggcacatggc
     1921 taccgttggg agacaattga aaaaggaatt tatagaggca ttcgtatggc tttaccagcg
     1981 attgttatca ttattatgat tgggctaacc atcggagctt ggctaggtgg tggaattgta
     2041 gctacgatga tttactacgg cttgaaattg atctctccgt cgctgttttt agtaactatc
     2101 tcaataattt gtgctattgt gacccttgcg attggtagct cgtggtctac aatgggaaca
     2161 atcggtgtag cggcgatggg gatcgggttt agtctcggca ttccggcacc gatggttgcc
     2221 ggtgcggtga tctcaggagc atatttcggc gataaaatgt cgccactgtc agacactacc
     2281 aatctggcag cagggattac cgaaaccaat ctgtttgaac atatccgcca tatgtttatc
     2341 actaccgtgc cggcgttcct gattgcgtta tctgtctatt tctattttgg tatggaattt
     2401 agagccgaaa atctcgatct tgctaaaatt gaagacatta tgcaggcaat gcaggaacat
     2461 ttcttgattt cgccttggtt gctattagtg cctttattag tcgtggtgtt ggtggcaaaa
     2521 aaagtgcctg ccttaccggc attagctgca gggataattc ttggttggct ctgccacgtt
     2581 tttgtgcaag gcggtgatgt cagcgtagca gtgattactc tgcacgacgg ctataaaatt
     2641 gagagcggcc acgagatgat tgataagctg ttcaaccgtg gtgggatcga gtcgatgatg
     2701 tacaccattt cccttacgat tgttgcgatg acttttggtg gcattgcaga gcaagctgga
     2761 atgttacatt cagtagtgga aaaaatcctt acccttgcaa aatcagcagg tagcttaatt
     2821 agtgctacga ttgtatcggc atttattacc aacgtaacga catctgagca atatatttct
     2881 attttattac caggcagaat gtatataaaa gcctataggg ataagggact aagttcgaga
     2941 aacctttctc gtgcattgga agacggagga acagttactt cggttcttgt accttggaat
     3001 acctgtggtg tttatgcgtt ctcaatgttg caagtgagtg cttttgaata tgcaccgtat
     3061 gcaataatga attggctcat tccactgatt gcgattggct tggcaacctt gaatatcaaa
     3121 attgagcgat tgccaccgga agaattagcc aaagaacctg aggaaattac tctgccaaaa
     3181 cgtggttgtt gtccataatt tatctaaata gtatttaata acaataggtt aagttaaata
     3241 acaagcggtc ggttttatct taaaatttgc aagtttatac ataaatttga tcgcttgctg
     3301 tatagaaagg aaaaatgatg tcataccaac ttttacctaa caccactatc cgtcctgaat
     3361 tgagccgtca ttaccgcttt gatgagcaaa ccctggtgca aaatctgata gaacaagcac
     3421 attgtgatga acaggctgat aacattaaaa agctcactac ccaattagtc ggtaaagtcc
     3481 gaactgcacg ccagaaagca agcggggttg atgcgttaat gcacgaattt tcactctcca
     3541 gccaagaggg ggtggcgttg atgtgccttg ccgaagcatt actacgcatt cctgacaccg
     3601 ccactgcgga taaattaatt cgagacaaaa ttgccaaagg ggattggcgt tcacacaccg
     3661 gcaacagccc ctctctgttt gtgaatgcag cggcgtgggg cttggtgatt accggcaaat
     3721 tggtttcaac ccacagcgaa agctcactct catcagcact ttcacgcctg atcgccaaag
     3781 gcggagaacc gctgatccgc aaaggtgtgg acgtagcaat gcgtatgctc ggcaagaaat
     3841 ttgtaacggg cgaaaccatt caacaggcga ttaaaaacgg cgaaaaacgc ttcgcaatgg
     3901 gttatcgtta cagctacgat atgctgggcg aagcggcact caccgccgaa gatgccaaac
     3961 gctattacaa cgactatgtt gcctctattc acgctgtggg tgccacctcg aaaggcttgg
     4021 gcgtgtataa atcctcgggt gtgtcggtca aactctccgc cattcaccct cgttattccc
     4081 tttcccaaca ccaacgtgtg atggacgaac tctatccacg tctgaaagaa ctgttcttgc
     4141 tggcgaaaaa gtatgacatc ggcttgaaca ttgatgccga agaagccgac cgcctcgaat
     4201 tgtcgcttga tttgatggac agactgcttg ccgaccctga tttggcaggg tttaacggca
     4261 ttggttttgt ggtgcaggcg taccaaaaac gttgcccgta tgtgatcgag catttaattg
     4321 agaccgcccg taaacataat cgccagctaa tgattcgctt ggtaaaaggc gcatattggg
     4381 acactgaaat caagcgggcg caaatggacg gtgcagaggg ctatccggtc ttctcccgta
     4441 aggtgcatac cgatttgaac tacatcgttt gtgccaaaaa attgctggcg gcgcaagatg
     4501 tgatctatcc gcaatttgcc acccacaacg ctcaaactct cgccaccatt taccacttgg
     4561 cacagggcaa acgttttgag tttcaatgct tgcacggtat gggagagagc ttgtacgacc
     4621 aagtggttgg cagcgataat cttaacgtgc aatgtcgcat ttatgcccct gtcggtactt
     4681 atcaaaccct gcttgcctat ttagtacgtc gcttgttgga aaacggagcg aacagctcat
     4741 ttgttagcca aattgtggat gaaaatctca gtgtagatga tctggctcaa gcccctgttc
     4801 aaaaagcaga actgaccaat ggcactatgc acccgaaaat tccattgcca gtcgatttat
     4861 ttgacgacaa tcgtgttaat tccaaaggct atgatttaac tgatgcagta agcctacaaa
     4921 atttagaaaa tgccctcaat gaacttacca aacagcatta ccgtgctgaa ccacagctgg
     4981 caaatgataa tacaagcggt caagaaagcc gaaaaattta caatccagcg aaccaagctg
     5041 aattagtcgg cgaagtgatt gatgccaccg aaaacgatat ggaacaggcg tttgaaagtg
     5101 cggcggcgtt ccaaagtgaa tgggcgaata cttcccctgc ggtgcgtgcc gagtgcttag
     5161 aaaaaatggc ggacttgatg gaagccaata tgccacaact gttcgatttg gcggtgcgtg
     5221 aggcaggcaa aacgctcaac aatgcaattg ctgaagtgcg tgaagccgtc gatttctgtc
     5281 gttattatgc caaagaggta cgcaacaaca ttgaagcata caaaaatccg cgtggcattg
     5341 tagtagcaat tagcccgtgg aactttccgt tagcgatttt tgtgggtgaa gtttcatctg
     5401 cgttggtggc aggcaatgtg gtactagcaa aaccagctga acaaacttcg ttaatggcac
     5461 attatgctgt cagccttttc taccaagcag gtgtgccgaa agcggcgttg caatgcttac
     5521 cgggtagagg aaaaacggtt ggggtggcgt tggtggcaga tcatcgtgtg aacggcgtga
     5581 tttttactgg ttcaacagag acagctaaaa acattaaccg caatttgcac aaaaacgaga
     5641 aaattatacc gcttattgcc gaaactggcg gacaaaatgc aatgattgtt gatagctcgg
     5701 cactgggcga gcaggttgtg atagatgttt taaactccgc atttgactca gcagggcaac
     5761 gttgttcggc attgcgtgtg ctgtatctgc aacgtgatgt tgccgatcac attctcacaa
     5821 tgctcaaagg agcaatggcg gagttgaaag ttggtcttcc acaacactta actaccgatg
     5881 tcggaccagt aatcgataaa gtcgcacaac aacgcttgct cgatcatatt gaaaatctca
     5941 aaaaatcggc gaaaagttac tatcaggtgg ctatctcctc tgaaattgcc gaaaatggta
     6001 ttttcgtacc gccaacgctg ttagaaatag atcatatcag ccagcttaaa cacgaagtat
     6061 tcggaccggt gctacacgtt atccgttttg atgcggataa actcgaccaa gtgattgccg
     6121 acataaactc cacaggtttc ggtctaacca gcggtttgca tagccgaatt gatgaaacgg
     6181 tggatttatg gttgaaatct gtccacgctg gaaatctgta tgtaaaccgt aacacggtag
     6241 gggctgtggt cggcgtacag ccattcggtg gaatggggtt atcaggaact gggccgaaag
     6301 ctggcgggcc gctctatcta caacgtttag taaaccgcca agaatggaca ttgaacggtt
     6361 tacagggcaa tgcacaagcg gtcgattttg acttaaattt tgcaatccgc aaggttctaa
     6421 gtggagctga gcagcaaacg gcgttagatc tggccaaaag ccttgcacgc cgctcgccac
     6481 tcggaaaaac ctacccaatg cagggtatta ccggcgagaa aaacgagatg attttcgtgg
     6541 ctcgcccaca gattgggatt agcaaaggta atttggcttc acaggtgcaa gccttgattg
     6601 ccattgtaac ggtcggcagc caagcggtgg cagaaaaatc aagcgagctg gcaaaacacg
     6661 cctctgcctt tggtaagaaa ttacaggtgg tggatgattt caacagtctc gatcacctca
     6721 gcacactcat tgtgcttgac ctgctttcta gtgaggaaaa attgcatcat gccgaacgca
     6781 aaggggcgat tttgacctac atcgaagggc tggatttagc gctctcactg ctgccgttgg
     6841 tacacgagaa agcaatcagc atcaacaccg ctgccgcagg gggaaatgcc agcttaatga
     6901 gtgaaatgga ttaagcaaca aacaaaagag tataagaggg cagatcacaa tgatctgcct
     6961 ttttatttta aggggctgtc ctagataacg actaaaactt ccatttaggt taagataacc
     7021 ctatgagaaa aagtcgtcta agtcagtaca aacaacataa actcatagag ctgtttgtag
     7081 caggcgtaat cgctcgaaca gccgcagagt tagtgaatgt aaataaaacc accgcagcct
     7141 attattttca ccgtttgcga ttgctcatct atcaacatag ccctcatttg gaaatgtttg
     7201 agggagaaat tgagattgat gagagctatt tcggcggtca tcgcaagggt aaacgaggtc
     7261 gtggtgcagc aggcaaaacc gccgtattcg ggcttttaaa gcgtgacggc aaggtttata
     7321 ccgtagtagt gccgaacaca caatctgcta cacttttgcc gattattcgg gaaaaggtga
     7381 agcccgatag ccttgtttac accgattttt atcgaagcta tgatgtgctt gatgtgagtg
     7441 aatttaacca ttttcgtatc aatcacagca cacacttcgc agaaaatcaa aatcacatta
     7501 acggaattga gaatttttgg agtcaagcaa aacgtcattt acgcaagttt aatggtattc
     7561 cgaaagccca ttttgagcta tatttgaaag aatgcgaatg gcgttttaat cacagtgact
     7621 taaaatctca aatattcctt ttaaaacaat tggttaaagg ggggttaggt tagttatcta
     7681 ggacagcccc taaaagtaat ataaccgata tttaggcctg acttttcaaa taattgaata
     7741 tctttattcg cttttaaagc agacaaatct gacgggttcg gataaggcat cgcttggcat
     7801 tcgttcttct ccaatttagc taaacgtact gaggcatcgg gcgtaatact aaatacaagg
     7861 cgatctatct tcgcttttcc ttcccaatag tgttcaaatg ctgtaaatct taccgctgcg
     7921 tccttttggt aaccatagaa ctggaatgca cctgtgccta taggttctaa atctaatttt
     7981 tccggcgtac ccgctatttg cattttattt gcatattccg cagaaaagat cgccataaaa
     8041 tccatagcta aattagcaag aaagggggca ttcggttcag ataattcgat ttttaccgtg
     8101 taatcatcta cttttgttac atttttgatg atgttttgca tattcattcc gtagaaaaac
     8161 tcatagttac cgccggacaa tttgtgatat ggattcgtct tatcaaactg acggttaatc
     8221 gaaaaaataa catcatcagc attaaaataa cgactagggg taaaactttt attactctgg
     8281 aactgcacat tctgacgcaa gaaaaaagta taaatttttc cgccttcact gatttcccat
     8341 cgctctgcca gagaaggagt gaggttagtg gtaccttttt caaaatcaat caggcgatta
     8401 tagattgctt gcccgacatc aagagtagct ccatctgttg caatctgagg attcaatgct
     8461 gccggagatg attccaaaca gtaagtaaaa gatttaggtg ctgcgaaagc agaacctgta
     8521 aatgctaaag aaataagtgc aagttgtgtc agcttgttca ttgtcatatc cttaaatgtt
     8581 aagcaataaa aaaccctttc aaaagttgcc ttccgaaagg gttagaattg ggtttgcgat
     8641 tttggattgc gtttgccatt tcaggttttc ggaagatatc ttccgaacac gccaaatgcc
     8701 cgaaagatta atcggtcaaa tggtagtgat gatgtttaac gcaatagctc ataatattct
     8761 ccaaaattga atgtttagga atttacgctt tttaaaaatc aattgcaaac gttttcttta
     8821 aaattttgta aaaaattcaa catttttcac cgcttgtatc gtacctagga gcaaatggcg
     8881 atttgctcct aggtttccaa gcaataggct attttttctt cgcatattta agtgagtcaa
     8941 tcgctaccgc caagataatg atgccacctt taataatata ttgccagtaa gggtttactc
     9001 caatataggt taagccgtag ttgataacgg tgaagattaa cacccctgtt actacaccga
     9061 tgatagtacc cacaccaccg gcaaaggata ccccacctac cacacaagcg gcaatggcat
     9121 ccatttcata cataaagcct aagttgttgg ttgcactacc gatacgacct gcttctaaca
     9181 taccgccgaa ggcatagaag atgcctgaaa gcatataaat acccatcagg ttaagcggta
     9241 cgtttacacc ggaaactcgt gctgcttcag ggttgccgcc aatagcaaat acgtttttac
     9301 cgaagcgggt tttattccat aacgtccaca taataatggt agcaatcacg gcataaatag
     9361 tgatgtagga tagcctaaag tcgccaaagc ggaagaagcc ttgtgcaaag gttgagaaat
     9421 catcgctaaa gcctgcaatt ggcgatgagc ctactgcatc gtagtaaagc gagttgatac
     9481 catacacaat aatcattgtt cccatcgtgg caataaacgg tgttacgttg aggtaagcca
     9541 ccacaaagcc gttaaataaa ccaatgacag caccgatggc acacacggtt aatacaacca
     9601 caggaatcgg gatttccgag aggtttggga ataccttgtt catattttcc attgattgga
     9661 gcaaggtggc ggaaattacc gctgccaagc ccacttggcg accggcagat aagtctgtcc
     9721 cttgtgttac aatcaagcct gcaaccccta atgcaataat caaacgcaca gaagattgcg
     9781 ataaaatgtt actgaagtta cgcaagctca agaaacttgg gtcttgcaca ataatcacaa
     9841 taagtaagat taataatacg aagtaaatcg cattttgttt aaaaaaatcg agtgttctat
     9901 tttgttgtaa agcagacata cttcactcct tgttataaat attttgctgc gagttgcaag
     9961 atttcttctt gcgaggtgtg agcggtttcg acaatacctg caactttccc gttactcatc
    10021 actaaaattc ggtctgtgac cccaagcaat tccggcattt ccgatgaaat cataatgatg
    10081 cctttatctt tattcgccag ctctaaaatc aactggtaaa tttcaaattt tgccccgata
    10141 tcgataccac gggtcggctc gtcaagcatc aagatttcag gctgggttaa caaccaacgc
    10201 ccgataatca ctttttgttg gttaccgccg gaaagtgagc caatatgcgt ttgatgcgat
    10261 ggggttttta cattcatcga atcaattacc cattgggtat cgcttttcat ttttttattg
    10321 ctcagtaagc cgaacttgcc tagataagac ttcatatttg aaatcagaga gttaaactca
    10381 atgcttaagt tggcataaat ccctgttgaa cggcgttctt ctgtaaccaa tgcaaagccg
    10441 ttattaatcg catcaaaagc gttgcggtta ttgatttctt tatcgtttag tcggatagtg
    10501 ccgcctgctt tctcccgtac accgaaaatg gtttcaacaa tatcagtccg ttttgctcca
    10561 actaagccgg cgatgcctaa aatttcccct ctgcgtaagc taaagctgac atcttgaata
    10621 gagggttgat tttttgccgt taaatgctca acttcaagaa tcacttcttt cggcagattg
    10681 gttttttcag ggaaacgctg ggtcagctca cgccctacca tcattgaaac cacttgatcc
    10741 attgaggtat ctttaattgc aacggtgttt acccatttac cgtcacgcaa aatggtaatt
    10801 tcatcacaaa ttttaaaaat ttcgtccatt ttgtgtgaaa tatagataat gccacagcct
    10861 ctgtctttca gtttttggat aattttaaat aaatgctcga cttctttttc tgaaagtgac
    10921 gaagttggtt cgtccataat cacaattttg gcattgtaag agaaagcttt tgcaatctcg
    10981 atcatctgca tttgtgaaac cgataatttg gctactttat cacgtggatc aacatcaata
    11041 tctaattcat caaaaatcgc cttagtatca cgatacattt tatcgtgatc tacaaaaggc
    11101 ccttttagtg ggtaacgacc tagccataag ttatccatta ccgtcacttg ttttactagg
    11161 ttcaactctt ggtgaaccat tgagatccca ttttctaacg cctcttttga ggtcttaaaa
    11221 ttcaccggct tgccaagaaa gagaatatct ccctcatctt tagcataaat cccaaataag
    11281 catttcagta acgttgattt acctgctcca ttctctccca ttaaggcgtg aacactatgg
    11341 gatttcaccg ttaagttagc attatctaag gcttttaccc cgggaaatga cttgctaaca
    11401 tttgtcattg tgagtaaaac ttcacctgtc atatctcacc cctgattaca tcgaaaaatc
    11461 gaaaaaaagc acgggtatcc atcacccgtg ctaaaagcgt gaattatttt aaaaattcag
    11521 ataagttgtc tttatcgaca ccaacgtaag gaatacgcac cacacggttt tccaatttcc
    11581 attgtgtacc agcaactgca tctttaccgt ctgctaagtt agcagaaagc tgaacaaccg
    11641 ctttaccttg gtttacacca tcatttaata ccgtaccggc taattcacct tttttgatta
    11701 attgaagtgc ttctggcaat gcatctacac cgaagattgg taattttcta ccgtgagctt
    11761 tggttgcttc taatgcacct aacgccatac catcattatt agaaataatt acttcgatgt
    11821 ctttcgcttt accacttgat aaccaagcat ccactttatc tttagcttgg gctgcatccc
    11881 ataatgctgc gtccataaag atttgctcac tgtcgatacc ttgtgctttt aagctttcta
    11941 ccacatattt agtacgtgct tccgcatcag ggtgacccgg ctcacctttt aataaggcaa
    12001 attggatttt accgtcttta ttcaagtcta attcaggatg ggctttccac tgttttgcaa
    12061 ttaactcacc ttgaataatg cctgactctt tcggctcagt acctacataa taagctttcg
    12121 gatagctatc aatcgcagct gcacccgggt ctttattgaa gaacaccaca ggcacatctt
    12181 cactttttgc tttttgaata attgttttat aagctgatgg atccactaag ttaattgcta
    12241 atgctttaac ccctttagaa agtaatacat caacttggtc gttttgaata gattgcgtat
    12301 tttgcgagtc attcattaat aactcgactt tttgtgtttt accctctttt tcgatttctt
    12361 tacgcattaa tgccataaag ttatcgtcat atttataaat tgttacacca atacggtttt
    12421 cagcttgagc tgtactgatc gttgcaccta atgcgactgc cattgccact gcacttaata
    12481 ctgctttctt catagtagat cacctctttt atgtgtttat agggaaatga attgcttacc
    12541 ataagcaact tggtgcaaag tataactaat tttaaaaaaa caatccgtga tcattctcac
    12601 agaattaaga caaagtggag aaatttttaa ttttaagtat aaaatttgaa tattcgctct
    12661 attcaaatct gttggaagaa aagagaaagg atttgcaaga ttttactgaa aaatgaccgc
    12721 ttgttatcat caataagggg cgtatttata acgccccgct cctccattta aggtaaaaat
    12781 tgccctaaat tttccttatc aataccaata tgtggaagat aaatcgtttt agaggaatgg
    12841 ctttcccact gcgtatcttt cagcgcaggc ttaccttgtg ccaaattaga taccaatttc
    12901 accaccgctt tcgcttgtgc agagctatca tttaataccg tgccggctat ttcccctttt
    12961 ttcattaatg ctaacgtctc aggcaaggca tcaataccaa agatcggcaa tcttttctcg
    13021 tgtgcattta acgcatctaa agcaccaatt gccatttcat cattgtttga aatcacaact
    13081 tcaatctcag ctgcacggtt ttccaccagc cactcattca ttttattgcg agccaatgtt
    13141 ctacgccatc tcgccgtgtc actgtaaatt tcttctgcct gaacaccttg ttgattaagc
    13201 gattcaacca cagcttgaga acgctcagcg ctcacatcac tcggctcgcc cttaagcaat
    13261 acaaattgca atttcccgtc tttatttaga tcgaaatcgg ggtttgattt ccacactttc
    13321 gcaattaatt ccccttggat tctaccggcc tctttaggat cagcgctcac aaagtacgcc
    13381 ttttcgtaac tttctaacgc ttgtttactc ggtgtgcggt taaaaaagac aaccggcaca
    13441 ttataagcct tcgctttttc cacaatagtt ttcgactcat ttgcattcac aatattcacc
    13501 gccaacacac gcattttatg ctgaagtaag gtttcaattt gcgctaattg cttcacttgg
    13561 gaattttgtg catcattcat aaaccacttc aacccagcga agcctttcgc ctcgttttgc
    13621 atatccttac gcatttgagt cataaaatgg tcatcatatt tgtaaatcgt tacccccact
    13681 ctgctttcag attgtgcgta acttagattc acaccgcaaa taacagaaag tgcaaaagca
    13741 ctcaagattg tacgcttcat agaatgtccc tcttgctatg ccaaatatga accaattcaa
    13801 gcatagcgaa ttttgtgtaa ggaaaccgtg atctagttca caatttagcc agatttaacc
    13861 cacctcaggc gtaaatgatc gtacacccaa ttaaaaacta ccgaataaac taatacaaat
    13921 aaggtcattc caatatccat cacaaacgcc tgccaccagc cgatatcgag catatacatt
    13981 accaatggga tagtaaaaac cagcaaaccg ccctcaaaaa ggaatgaatg caaaatacga
    14041 atgcctaaac cacgttgcac tcgctcaccg gtaaacacct tatcaaaacc ccagttaaaa
    14101 ataacattcc acaccattgc aatcaccgaa atcatcacaa tcactgcggt taaatcaacc
    14161 atacgatgag aagtcagcca agaagttaag ataaccgtaa aaataatagc gaaacattca
    14221 aataacagcg cgtgaaacac acgctcccaa gcggtcattt ttcctccaaa ctttgcaaaa
    14281 taccaactaa atcaaataat cgttcactga tgattgcagg ttacgcaatt tagttttaaa
    14341 gtacctacat tattcatcaa tttagaagga ttagccaatg aaaaacgata aaccgattga
    14401 atgcgaaggc tgtaacacat ttgatgtagg ttctatttta gataacagcg aaacagtcgc
    14461 tactattcag cgcacttatg aaagcgaaaa tgaagctaaa gcggcacttg aaaaattcac
    14521 tcaaaaagcc cgtgatgtcg aatctgaacc ctgtgaaatc agcagtgaaa tcaccccgat
    14581 tgaaagcggt tttgaactgg ttgctcactt caaatttagc tgccaagcag aagtggttat
    14641 ttttcaatta ggaacacgtt tctaatacaa aaagctgatt caaacacttg aatcagcttt
    14701 tgtatgatag ctatttttga tgttgttcca aaatatcgtt ccactctaaa tgatagtaaa
    14761 accaatattt tttacgcgta gatatttgca ttgtatgcag ttcttttttc caaggtttga
    14821 atttactcgt atagtggata attttcggaa tcacatctaa atagccattt tttctcgcaa
    14881 gttcctcttg ttctcttctt aatactagtt caagaattgc atcaacttga taattatact
    14941 ctatcggcaa tgctccccaa ccgcctttaa agtaaatatt gagagcatct tgatcgccat
    15001 aagttaagtt tacaattttt tcattgatag taaccaactc atcacatact gaat
//
LOCUS       DANLXK010000062        14678 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.062, whole genome shotgun sequence.
ACCESSION   DANLXK010000062 DANLXK010000000
VERSION     DANLXK010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14678
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..847
                     /locus_tag="PXD88_001512"
     CDS             <1..847
                     /locus_tag="PXD88_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL6281085.1"
                     /translation="SLEKQIKNSQKIYQDKQSYLVEIEKSMNDYAELVKRYEKLLKVG
                     HSSHDEVNIQKSRYFQQKSLFNELKQELIQLKSTQLSLENEIETRKTEFNNQIIRYEM
                     QKSDLNIRLMEFESVSDIIVNASLDGKIESTSVTVGQIIKENDPLAQILPQNKGNYQL
                     VMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFKGKITSISTLPASLQELSFYKNLPV
                     NLEQGIPLYKILIELADQNVKYNDTSLYFMSGMKAEATLFLEKRKLYEWIFFPMYQLR
                     KNMEQ"
     gene            847..1638
                     /locus_tag="PXD88_001513"
     CDS             847..1638
                     /locus_tag="PXD88_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL6281086.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
     gene            2016..2933
                     /locus_tag="PXD88_001514"
                     /pseudo
     CDS             2016..2933
                     /locus_tag="PXD88_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(2935..3603)
                     /locus_tag="PXD88_001515"
     CDS             complement(2935..3603)
                     /locus_tag="PXD88_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL6281087.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(3647..5014)
                     /locus_tag="PXD88_001516"
     CDS             complement(3647..5014)
                     /locus_tag="PXD88_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL6281088.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(5133..5228)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(5399..6451)
                     /locus_tag="PXD88_001517"
     CDS             complement(5399..6451)
                     /locus_tag="PXD88_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL6281089.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(6498..6923)
                     /gene="ruvX"
                     /locus_tag="PXD88_001518"
     CDS             complement(6498..6923)
                     /gene="ruvX"
                     /locus_tag="PXD88_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL6281090.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(6923..7483)
                     /locus_tag="PXD88_001519"
     CDS             complement(6923..7483)
                     /locus_tag="PXD88_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL6281091.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(7483..8214)
                     /gene="rsmE"
                     /locus_tag="PXD88_001520"
     CDS             complement(7483..8214)
                     /gene="rsmE"
                     /locus_tag="PXD88_001520"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL6281092.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(8274..8564)
                     /locus_tag="PXD88_001521"
     CDS             complement(8274..8564)
                     /locus_tag="PXD88_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6281093.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(8545..8718)
                     /locus_tag="PXD88_001522"
     CDS             complement(8545..8718)
                     /locus_tag="PXD88_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281094.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(8890..9477)
                     /locus_tag="PXD88_001523"
     CDS             complement(8890..9477)
                     /locus_tag="PXD88_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281095.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            9569..9880
                     /locus_tag="PXD88_001524"
     CDS             9569..9880
                     /locus_tag="PXD88_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL6281096.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            9972..10061
                     /locus_tag="PXD88_001525"
     tRNA            9972..10061
                     /locus_tag="PXD88_001525"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10006..10008,aa:Ser,seq:gga)
     gene            complement(10237..10611)
                     /locus_tag="PXD88_001526"
     CDS             complement(10237..10611)
                     /locus_tag="PXD88_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL6281097.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(10636..10938)
                     /locus_tag="PXD88_001527"
     CDS             complement(10636..10938)
                     /locus_tag="PXD88_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL6281098.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            11059..11379
                     /locus_tag="PXD88_001528"
     CDS             11059..11379
                     /locus_tag="PXD88_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL6281099.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            11438..14164
                     /gene="secA"
                     /locus_tag="PXD88_001529"
     CDS             11438..14164
                     /gene="secA"
                     /locus_tag="PXD88_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL6281100.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            14251..14649
                     /gene="mutT"
                     /locus_tag="PXD88_001530"
     CDS             14251..14649
                     /gene="mutT"
                     /locus_tag="PXD88_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL6281101.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
BASE COUNT         4394 a         2758 c         2992 g         4534 t
ORIGIN      
        1 tagccttgaa aagcagatca aaaacagtca aaaaatttat caagataagc agagttattt
       61 agtggaaatt gaaaaaagta tgaatgacta tgcggagttg gttaaacgct atgagaaatt
      121 attaaaagta gggcattcca gccacgatga agtgaatatt cagaaaagcc gttatttcca
      181 acaaaaatca ctgtttaatg agctaaagca agaattaatt caattaaaat ccacccaact
      241 tagcttggaa aatgaaattg aaacccgtaa aaccgaattt aataatcaga ttattcgcta
      301 tgaaatgcaa aaaagcgatt taaacattcg tttaatggaa tttgaatctg tttcagatat
      361 tattgttaat gcctctttag atggaaaaat tgaaagtacc agcgtaacag ttgggcaaat
      421 tattaaagaa aatgacccgc ttgcacaaat tctgccacag aataaaggaa attatcagct
      481 agtgatgtgg gtaccgaata gtgccatttc atttattaaa caaggcgatg aggtgaatat
      541 tcgctatgag gcttttccgt ttgaaaaatt cgggcagttt aagggcaaaa ttacgtcaat
      601 ttcaacctta ccagcttctt tgcaagaact tagtttttat aaaaatctcc ctgtaaattt
      661 agagcaaggt attccgcttt ataaaattct gattgagctt gccgatcaaa acgtaaaata
      721 taatgatacc tccctttatt ttatgagtgg aatgaaagcc gaagccacgt tatttttaga
      781 aaaacgtaaa ctgtatgagt ggatattttt ccctatgtat caattacgca aaaatatgga
      841 gcaataatga caggaattaa gcagttaaaa tttgattttc ggagaagaat acctgttatt
      901 ttgcaaactg aaacagctga atgtggctta gcctgtttag cgatgatgtt gggctattac
      961 gataaaaaca ccaatttatt tgaattgcga agtcaatatg gtacttcctc tcgtggcgta
     1021 acgctgcata ctttaatttc tattgcaaat gactgtggtt taataactcg ccctctttct
     1081 ctagagttag atgaagtacc acaacttcgt ctgccttgta ttcttcattg ggattttaat
     1141 cattttgtag tattaactca cgcaagtgaa aaacagttta ttatccacga tcctgctttc
     1201 ggtaaacgta aattatcccg tgctgaattt tccaaccatt ttaccggagt cgctttagaa
     1261 gtttggtctg aagttaaatt tgagaaaagc aacaatgaaa ataccattag tttgtatgaa
     1321 accttaaagc atatttctgg cataaaaggt gcattagtga aaatttttgc cctttcaatg
     1381 ctcattgaac tcattgcctt attgatgcca attggaacac agttagtgat ggatcacgtt
     1441 atgcaagcga aagatcaatc attactttta attatctgta ttgggctatt tttatttacc
     1501 ctttttcgca caatggtcag tatgtttagg gcttgggttt ccttgaaaat gaattattta
     1561 attgattttc aatggacagc cagtttcttt tctcatctct taaaattacc gcttgatttc
     1621 tttgaaaacg ccaagtaggt gatattcatt cccgatttag ttcattaaaa accattcaga
     1681 aaactctaac ttcaagcatt attaccacga ttattgatac gattatgata atcagtttaa
     1741 ttattatgat ggtgttatat ggcggttggc tcttttgggt agtattagct ttttccttta
     1801 tctattttat tcttcgaatg gttacttatt tagtttatcg tcaactgaat gaagagcaga
     1861 ttattaaagg agcaaaagcc cattcgcatt ttatggaaac tttatatggt attacaacgt
     1921 taaaatcatt aggattggaa aataaacgac aagaacagtg gatgtcgctc aatgcggatg
     1981 cttttaacac atcaattaag gtaactaaat ttgatatgct gttttccggt attcatacct
     2041 ttatttctac catcgaacag attttaattc tttggattgg ggcgacaatg atgattgaaa
     2101 atgtgatgac attaggaatg tttgtcgctt ttaatgccta tcgaggctct ttctcttcac
     2161 gaatggggaa tttaattgat attattttta gcctaaaaat tctttcatta catagagagc
     2221 ggattgcaga cattgcttta aatgaagtcg aagatgaaag taaatatcaa gaactcagat
     2281 ttgaacataa ccaaacagat atagaagtta aagacctttg tttcaaatac gatccttttt
     2341 ctaaaaatgt gcttgaaaat gtcaatttag tgatcagaag tggggaaagt gttgctatta
     2401 ccgcaccatc aggttatggc aaaacaacgt tattaaaatt aattgcaggt ttattaaaac
     2461 caacctcagg ttctgtgtat tttaacggca ttgatattta tcagttagga ttaagtcaat
     2521 atcggagcca aattgcttgc gtattacagg aagataaatt cttttctggt tccattttag
     2581 agaatattgt tagttttgaa agtaattatg atcgagaatg ggctatcgaa tgtagcaaac
     2641 ttgcgaatat tcacaatgat attatggcaa tgccgatgaa ttatgaaacc ttattaggag
     2701 aattaggaaa taatttgtct ggcggacaaa gataacgatt gtttattgct cgagctttat
     2761 ataaaaagcc taaaattctt ttgatggatg aggcgactag ccatttagat gaagaaaatg
     2821 agaagcttgt caatcaagct atttcacgaa tgaagataac aaggattatt attgctcata
     2881 gacaatcgac tattcagtcg gcggatagaa ttattgccct gaatgacagg taaattaatt
     2941 cctatttttc tgttcttgcc gataaagttt attgcacgga atgctgtcgt tgttgccgtc
     3001 tagctctttc cagccgcatt gttgaaagta gcgttttgcc tgtgcgtaat tgccgatttg
     3061 gttgcagctt aatttaattt ggcaatcaat cgttggtggc tggtttgcaa tattttccgg
     3121 ttttttgacc gcttgtggta aggttgaggt gtgtgttttt cgccattggc tcgggttaat
     3181 cgggaatttg tcctgccata agccgatttt agcttgctgt gcttgatctt gtgcttcgat
     3241 atattcccgc tttgtggtgt aagcccacgc cataccgttt tccactaagg ctaagttgat
     3301 gtttttatcg tttaagtaga gggtggcaag taatcgttgg taacgatcat agcctgaaac
     3361 tatggcagta atgttttgtt gaaacacgaa ttgagccaga gcttgtttgg ctttgttgcc
     3421 gtaaggctgc gcttgttcgg gggcatcaat atgttgtagc cttattttta gtggtgtttt
     3481 attgaccaaa caagtgaggg tgtcgccatc gctaatgcca acgactttgc attgtagttg
     3541 gcgttcggcg gcatataccg atgagaaaaa taagctaaaa atcagggcgt aaagatattt
     3601 cattattaaa aaagagaggg ctaataagcc ctcattctat cattttttat tcggctttac
     3661 ctgttttaag gcgagcgaag aaatcttttg tttcactaat aatcactttg cgtaacgcaa
     3721 tcaatgcgat taaattcggg aatgccatta agccgttcac gatgtctgcc agcgtccaaa
     3781 ttgtatcgag ttgtaaaaat ggagcagagg cgatgagtgc aataaacagc aagcggtata
     3841 atttaatgta ttgggtgcga cctcgagtga gatagacaaa acagcgttca ccgtagtagc
     3901 accagcctaa aatggtggta aaggcaaaga agactaaacc aactgtcaca attatcgcac
     3961 cgaatgagct gtttaaacct tgagtaaaag cggttgtggt gagttctgcg ccttttacat
     4021 cgcctgccca agcccctgaa atcacaatta ctaagccggt cattgtgcag acgataatag
     4081 tgtctaagaa cgtgccggtc attgaaatta ggccttgacg taccggctct ttggtttggg
     4141 cggcagcggc ggcgatgggg gcagagccta atcctgattc attcgagaaa ataccacgtg
     4201 caacccctaa ttgaatcgct tgcatgacgg tgaatccgac tgctccgcct aatgccgctt
     4261 gtgggttgaa agctgcgtgt acaatagtaa taattgcttg tgggactttt tccatattca
     4321 gtagaatgac ggataaagcg gcgatgacat acccaatagc cataaacggt acaacaatgg
     4381 ttgcaatttt agaaatccgc tgcacgccac ctaaaataat agcggtaacg ataagggtta
     4441 aaatgatcgc actgaagata atcggcacat caaaggtgct ttctaaggcg tgggtaatgc
     4501 cattcacttg ggggaacgtg ccaataccaa gcaaagcgac caatacgcca aaaaacgcaa
     4561 aggctttagc aagccaacgc catttttttc ccattcccag ttcgatatag tacatcggac
     4621 caccagccac aaatccggct ctatctttag ttcgatattt aattgccaat aagccttcgg
     4681 catatttcgt agccataccg aataaggcaa tcagccacat ccaaaataat gctccaggcc
     4741 cgcccgaatg aatagcggtt gccacgccga caatattccc cgtgccgata gtagctgcta
     4801 gggcagtgga aagggctgca aaagcggaaa tatcgcccga ttgccctttg cctttttccg
     4861 gtttgaacat atagcgaaag gcttgcccta gttggcttaa ttgaatacct ttgagtgaaa
     4921 aggttaaata taaccctacg cctgaaatta aaatcaggag tggcgggccc caaacaaaac
     4981 tgttgatttg attaagaata gtgtcgatag acatttgatg ttcctcgtaa aaactgctta
     5041 caaggaaaga aaaggaatgc aagagacaag cggtcaaaaa acggaaattt tttgcaaaga
     5101 attagcaaaa aaacaccgct tgtatcgtat aacttttctc ccctgtcctt ttgcctgagc
     5161 gtttcacaca ttgctgtatt ttcgccttcg gcggcggatt ttaatccgct ctctccaagg
     5221 gttcgtccag taacagtccc cgcagtgttc actgcacctg aaagagttta cctcgtcggt
     5281 gaaatgttaa ttcatttctc tccagctacc ttcatccgaa caatctaatt tattttataa
     5341 tgtaaaataa aaaagatttg ccaaattcta gcaactcttt tgcttccgtc aagtgaattt
     5401 aacgatattt ttgttctttc ggtacttctt ctaaatcgct aaataatacg gcatattttt
     5461 gggtggcttt attggattct aatgccactt tacacgccat cgtaagtgga acagaaagta
     5521 acattcctac ggtgccaagt aaccaccccc aaaatagaag tgagaggaac actacaaggg
     5581 tagaaagccc gagtttcttg cccattaatt taggttcaag cgcattaccc acaaccatat
     5641 taatcacgac aatgccgatt aaagtgccta atcctataga aaagccattg agtaccaagg
     5701 cttgaatcac aattggaatt cccgccaaaa tagagccgat attcgggacg tagttaagca
     5761 ggaaggttag aattgcccat aaaatcgcat attctacgcc tagaatttct agtaagatcc
     5821 aaactaaccc tccggtgagt aggctcacaa aggttttaac tccaaggtaa ccaatcaccc
     5881 cttcaagtac ttggttgata tactcttttt cgttgcttaa atcatcatct gggctaagtg
     5941 cgagggctaa tttatatttg gcaaccggca tttccaatag cataaaaatg acgactaaga
     6001 aaatcacaaa aatattcgat aatgcaccgg atagccccat tagcagtttg ctgaccaaat
     6061 tcattattga gcttgggtca aatttgctca taatctcttc ttgtgagagg gtaagtggaa
     6121 tatgccatct atgggcgagt tctagaatca cctggattct agatgaaagc tgaattttgt
     6181 attgcggaat agcattagta aattcttgca aggtgttatt aataatgcct gctaagaaac
     6241 tgaatcctaa gataaaaaca ataagtaaaa tggtaatggc taaccataat ggcactttac
     6301 gcttagtcat aaatttgatc attggtgaac aaataatggc aataaatagc gaaagtaaaa
     6361 atggcacaac aatttcattg gataatttaa tccctgccag aataatgata atggaggcta
     6421 tcgccacgag agttttggtg gaatgtgtca taatttttcc ttttacaagc ggttaaaaat
     6481 cagcaatttt ttacaaatta gtgattctca aaccaacttt ctaaaattaa acaagcggaa
     6541 atggaatcca ctttatcctt ttttaatgct ttgtaaccac cacgagaaaa aatttccgct
     6601 tttgcttcaa cagtagtgag gcgttcatct tgtagctcaa ccggcagatt aaagcgtccg
     6661 tttaagcgat tggcaaattt tctggcacgc tgagttaaag gctgctctgt gccgtccata
     6721 ttcaagggta gcccaacaac cagcatatct ggtttccaat cttgcaagag ttttccgatc
     6781 tcttcccagt ttggaatacc gtcttgggct ttaaatgtag ttaaaccttg agctgtgccg
     6841 gtaatacttt gtccaactgc acagccgatg ctatttgtgc caaaatcaaa ggcaatcacg
     6901 gtttttgttg tggtttctgt cattaagctc tcccagctct tgacggtatg cttgaaagcc
     6961 ccatcatttc ataggcttct gcccaacgct ctaaataacc ggtttcaaac agcgtttttt
     7021 cattcgcatc agacacaatc caataatttt gagcaatttc ttgctcaagc tggctgccac
     7081 gccaagtgga acaacctaaa cacacaataa atttttcagg tgaagccagt gtgccaaagg
     7141 agtctaacac atcaccggag gtagtgagcg taattttatc ggtgatcgga taagtgtgaa
     7201 taaaatcatt ggcggttttg gtgtgaataa taaagccacg atcttgattt accggcccac
     7261 cgcttaacac catttggtct tttttgtaat cacgctggtt cgccatttgg aaatccattc
     7321 gggtaatcag ctctagaacc gacagatcgg taggagtgtt aattactact cccattgcac
     7381 cttgcggatt atgttcgcaa atatagacca ccgtacgctc gaaatagtca tcgtccattt
     7441 ccggcgtggc aattaaaaat ttaccttgta aattctctaa cattaaatat ctccaaaaca
     7501 aacttgtaac gcagtaattg ccgcaagtga ggcggtttct gtgcgtaaca ctcgtttacc
     7561 cagtaatact tcagtaaaac cttcgctctc ggtcatggcg atttcttcgg cagataatcc
     7621 gccctcagag ccaatcagta aacgaacacc agctttcggc acattcggca gttcacgaat
     7681 ggtatatttg gctcttgggt gcaaattcag tttcaacata tcgtcttgtt ctttgcacca
     7741 gtcggtgagt ttcataatcg ggcgaatttc agggatttca tttcgtccgc attgttcaca
     7801 ggcggcaatc gcaattttct gccattgctg taatttttta tcttgccgtt catcattgag
     7861 tttcacgcca caacgttccg accaaagtgg ggtaatagtt tttaccccca gctccaccga
     7921 tttttgaatg gtaaattcca ttctatcgcc tcgggaaatc acttgcccta aatggatcgg
     7981 caggttggat tctcggtcat ctaattcact tgaatcaatt tttgcaataa tttgcttttt
     8041 ttcgaccgct tgtaacgtag cgtggaaaac gtggtttgaa ccatcaaata aaatgatttg
     8101 ctctccttgt ttcattcgta gcactcgccc aacgtggtta gcggcatctt cacttaacac
     8161 gcaactttga agaccagcta acggctgtgg ttggtaaatt cttgggattc tcataattat
     8221 ctagttataa attaaaggca gacgattgtc tgccataggt aagttaaaac gggttaagga
     8281 taaagtcttg aacaatgcac aatagtaata atcgaaattt cattctcttt aacttcacac
     8341 actattctat agccgttatg atatagttct ctcgtattaa taattgcacc ttttacaccc
     8401 attgtaggaa aaatggctaa attattaata ctattttcca attcttctag tatcctaatt
     8461 ccactacttg cataaccggt aaattcacta actgagatgg caatattctc taaatctatt
     8521 aaggcctctt cagtataata aatattatgc aacttttttg gcattttcag cacctctaaa
     8581 agcggcagca ataactcttt ttctgacctc ttcgggtgaa taaatccgac cgtttttaat
     8641 atcttccttt ccttgcttta cttttttagc aagataatca agatattctt ggctaacatt
     8701 atgataagga ttattcatat ttttcctccc tgcgatgagt ctctattgtg ggggctactg
     8761 atcgtttaat caagttaatt tatcttattt ttcgagccac atcacaaaac gagaaaacaa
     8821 caagcggtca tttttccacg ttttttgcaa aaaatcgaag aaagatgacc gcttgccaga
     8881 aaaaattaat tatttgaact ggtgaattgc attggcgatt tcattatcgt tgtaaatagc
     8941 tttcaccaca tcagaatagg cttggtctaa cactttcttg atttcatcat tgcttgcacc
     9001 aaatgcacct tcgtaaccac gggtagcgtt gaagtttttg ctaaagtttc ctttagaacc
     9061 ttgcactgcc acttttacac tcacttgtgc atcggctttg tagcgtaagt ttccttgttc
     9121 tactgtggca aagaatttac gaatattcac taccacattg gcattcgctg caccttgtac
     9181 aatttggaaa ccttttgcat tcaggtcttg ttggacggct tgttggaaca ttgcagcaac
     9241 ttcaggcact gcggttaaac gaatgacctc tccgttttta gtgtagcttg cgatttcacg
     9301 cgaggtgcgt aaatcttgtg tcattacatt caccgcagcc gtttgattgt ttgtgttaaa
     9361 tacagcagtt ggcgttgggg tagagaatgt taatgtgttg gattggcttt ggcagccggc
     9421 tagtaatgcg gcaacaaaag tagtggctaa cactaacgtt tttttagagc gtttcatagt
     9481 aaatccttct atattgaata aatttcgaga aaatttctgc ttagtatagt attatttcgt
     9541 tttgattttc aatgaacgag agcaaaaaat gtcggtagaa cagacaatta ttcaaaaaat
     9601 taagacagaa tttcagccga ttttctttaa tgtcgaaaac gaaagctata tgcacagctc
     9661 aggtagagga gcagaatcgc attttaaatt aactttggtg tcagataaat ttgaagggca
     9721 gagaacagtt gcacgtcatc gtgctgtcta tgcttgctta gctgaggaat tagctaatgg
     9781 cgttcacgca cttgctttgc acctatatac ccaaggtgaa tgggaagcga ctggcggact
     9841 tgtacctaaa tcgctaaatt gcttaggtgt tgggcaataa gtggataaaa atgatttatt
     9901 ttattttgtg aagaaaatac ttgaaagagc cgtgtaaaat tgctatattt acgccatctt
     9961 tttgttgatt cggtgagatg tccgagtggt tgaaggagca cgcctggaaa gcgtgtatat
    10021 gggaaactgt atcgggggtt cgaatccccc tctcaccgcc attcatactg aaagattcct
    10081 tactgttttc atagatattt ccttggttaa gttaaagtag ataatacttt ttcattttta
    10141 ggttatcccc gagcaaacat tgcttggggg tttttttatg cgatcggcga tagattacaa
    10201 agaaaaagga ttcctaagaa tcctttttat ctgcttttaa cgtactttac ctagtttata
    10261 gttattgctg ttttttaccg tgttgccatt tgggtcgcaa agttcaacgt gttgttcaga
    10321 cacttggaag gcaagattgc ctgatgcttt ttccagacga atcacatttg gcttattggg
    10381 ttcccaactg tatgtgcctt tgtctcggta agtgtattct tttttatctt taaaatatac
    10441 cgtatcatat tggtaggttt tatctgcatt taaggttagc tgggcttgga ttttctcaca
    10501 gtcagcacac ggtaattcac ctgcataagt accgctaacg cttttttgtg gtagcaatga
    10561 gcaagcccct agcattgcgg tggtaaaacc aatgagtgcg atttttttca tactattttc
    10621 ctcttcaaaa ttaaattatg taacactcgg atttactcta aattcaagtt gggttatttc
    10681 aggtaaatcg gtttgtatct gttttagtaa catattttgt tgcaagatta aaccttgccg
    10741 tacggttgca ttcttaacgc tcacaataag ctgattatca actaaattca ctactcggta
    10801 aagcccacga taagattctg gccatctttt ctgaattttt tggtttaaat cgttaatgaa
    10861 gtttgctttt tcgacaatac ggcttaagct tgagttctgt aaaatgtcat taatcttttt
    10921 aggtgctgaa tttttcatct gtttctttac atttcgtctt attttaggct tgattttacg
    10981 atacttgacc caataattta ctcattcggc tttactttag cgtataatta gcccaatttt
    11041 ttcatttatc ttaatttaat gagcttattt ttaaaacact ttcatcgaac gcctttttgg
    11101 tcgcaactct ttttgggaat ggttgcgata cttgctttac ctgaaattca ggttgcgtac
    11161 gccaatgaaa gtgaacagga aaccgttctt aatcaatctt ttcttcaata tgctcaatcc
    11221 gctaatgata ttgagcaaca atcgcttttt attgcagagt taatccataa aattgtggaa
    11281 attaaaccac aagcggtgca tttttgcgaa ttttttgcaa actcctaccg cttggataga
    11341 caaaatgctt accccattcg agccgggcca caaacctaaa tataatttaa ttttaccatt
    11401 aattgattaa cccattttta tatttaggaa taacacaatg atttcaaaat tactgacttc
    11461 tatttttggc tcaagcaacg atcgcacttt aaaacgttta agaaagcgag tggcacaaat
    11521 taataagctt gaaccaacct tcgagcaatt atctgatgag gcgttaaagg ataaaacagc
    11581 ggagtttaag caacgccttg cagatggtgt atcgctagat agcctattac ctgaagcttt
    11641 tgcgacagtg agagaagcaa gcaaacgagt attaggtatg cgaccatttg atgtacagct
    11701 gatcggcggt atggtgctaa cggggcgtaa tattgcagaa atgcgtactg gggaaggtaa
    11761 aaccctaact gcaactttat cttgttattt gaatgctttg accggtaaag gtgttcatgt
    11821 tgttacggtg aatgattacc tcgcccgccg tgatgcggaa accaaccgtc cgttatttga
    11881 gtttttaggc ttaaccgttg gagtgaatat tccggggtta ccttccgatg caaaacgtgc
    11941 tgcataccaa gcagatatta cctattcgac taacagcgaa ttaggttttg attacttgcg
    12001 tgataactta gctcacgata aaaacgaacg tttccaacgt gagttacact acgcattagt
    12061 tgatgaagta gactctattt taattgatga agctcgtacg ccgttaatta tttcagggcc
    12121 tgcggaagat gcgacccaaa tttatcaagc ggtagatcaa atcattccgc atttgattgc
    12181 tcaagataaa gaagacagtg aagagtacac cggtgagggc gattttacct tagatctgaa
    12241 aaacaaacag gctcatttaa ccgagcgtgg tatggtgaaa gtagaggatt tcttaactca
    12301 aatggggtta atggaagagg gcgaaagttt atatcaccct gctcgtattt cgctgttaca
    12361 ccatgtgagt gcagcattgc gtgcccataa attatttgaa cgcaacgtag attacattgt
    12421 aaaagacggt gaaattgtga ttattgatga gcacaccggt cgtacaatgg ctggacgtcg
    12481 ttggtctgac ggcttacacc aagcgattga agctaaagag cgtgtggcta ttcagggcga
    12541 aaaccaaact gttgcctcaa ttacttacca aaactatttc cgtttgtacg aaaaattagc
    12601 cggtatgact ggtacggcag acaccgaagc ctttgaattc cagcaaattt atggcttaaa
    12661 tacggtggtg attccaacca acagaccggt gatccgtgat gaccgtacag acttaatgtt
    12721 taaaagcgaa gcggagaaat ttgcggcgat tattactgaa attagagact gtatcgagcg
    12781 taaacagcct gttttggttg gcacagcatc ggtggaaaaa tcagagttat tatcggcaga
    12841 attaaccaaa gccggtattg ctcataacgt attaaatgcg aaattccacg ctcaagaggc
    12901 tgaaattgta gcggaagcgg gagctccggg ggcggttact atcgcaacca atatggctgg
    12961 tcgtggtacg gatattgtgc ttggcggtaa ctggaaaatg gaagtagcca agcttgagaa
    13021 cccgacacaa gaacaaattg atgcgattaa agctgcgtgg caagagcgtt atgacatcgt
    13081 aatgcaagcc ggtggtttac atattattgg tacagaacgc cacgaatccc gccgtatcga
    13141 caaccagttg cgaggtcgtt ctggtcgtca aggtgacccg gggtcatcac gtttctatct
    13201 ctctttagat gatgccctaa tgagaattta cctcaatgaa ggtaaattaa atatgatgcg
    13261 taaagccttt accgaagaag gtgaagcgat ggagtctaaa ctgttaacca aagtgattgc
    13321 ctctgcacag gcgaaagtag aagcgcataa ctttgatggg cgtaagcatt tattacaata
    13381 tgatgatgtt gccaatgaac agcgtaaagt aatttacgaa caacgcaatc atctattaga
    13441 aacagataat attgcctcaa tgatcgaaag cattcgccaa gatgtatttg aaagcacgat
    13501 taaccaatat attccgcctc aatctatcga ggaaatgtgg aatgtgccgg gcttagaaga
    13561 gcgtttacgc cgtgaatttg ggttggattt accgatttct cactggcttg aaactgaaaa
    13621 agacttgcac gaagagactt tgcgtgaacg tatcttaaat attgcgattg cagagtacaa
    13681 tgcgaaggaa gaaatagtag gcgcagaggt aatgcgtaat tttgaaaaag gtgtaatgct
    13741 acaaaactta gatgagcttt ggaaagagca tctagcctca atggattatt tacgcaaagg
    13801 tattcacttg cgtggttatg cacaaaaaga tccgaagcaa gagtataaaa aggaatcttt
    13861 tgcgatgttt accaatatgc ttgatacctt aaaattgaat gtaattagca ttttaagccg
    13921 tattcaagtg cgtagcaaag aagaggtgga agaagcgcaa cgccagcaag ctgaaatgga
    13981 cgctgcaagt acgccagtta cacaagctac cgattctgct gctggtagta gagaagaaaa
    14041 tagcgcagag agcttaagtg aagaagagtt ggcaaactta aatattggtc gaaatgaccc
    14101 ttgcccttgt ggttcgggca aaaaatataa gcattgccat ggtaacaaag cgagatattc
    14161 gtaattaaca agcggtcata ttcagtcagg aatttgcaaa ttttctgctt aatatgaccg
    14221 cttgaattta tagaaagagt gaaggaaact atgtcaaaac cgattattca agtctcagca
    14281 gggattattc gtaacgaatt tgggcaaatt tacttaaccc aacgtttaga agggcaagat
    14341 tttgctcagt ctcttgaatt tcccgggggg aaagtcgatc ccaatgaaac ccctgaagaa
    14401 gcactaaaac gagaattaga agaagaaatt ggtattcaag tgttaagcgc ttttccgtat
    14461 gaaaattttt gctttgaata tccaacaaaa atcattgaat ttttctttta tttggtggaa
    14521 gagtgggtaa atgaacctta cggaagagaa gggcaagaag gtttttggat cgcacaatcg
    14581 gatttagatg agggagcttt cccaccggca aatgcccaat taattaaacg cttaaaagaa
    14641 cacgcataat ttgtattgag aactgtatct aaagtaat
//
LOCUS       DANLXK010000063        14511 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.063, whole genome shotgun sequence.
ACCESSION   DANLXK010000063 DANLXK010000000
VERSION     DANLXK010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14511
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            23..99
                     /locus_tag="PXD88_001531"
     tRNA            23..99
                     /locus_tag="PXD88_001531"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:57..59,aa:Met,seq:cat)
     gene            250..1710
                     /gene="xseA"
                     /locus_tag="PXD88_001532"
     CDS             250..1710
                     /gene="xseA"
                     /locus_tag="PXD88_001532"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL6281102.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            2022..2107
                     /locus_tag="PXD88_001533"
     tRNA            2022..2107
                     /locus_tag="PXD88_001533"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2056..2058,aa:Leu,seq:caa)
     gene            2205..3029
                     /locus_tag="PXD88_001534"
     CDS             2205..3029
                     /locus_tag="PXD88_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL6281103.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTTIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETISQLCALLMPQFANSHFSA"
     gene            3041..4402
                     /gene="dnaB"
                     /locus_tag="PXD88_001535"
     CDS             3041..4402
                     /gene="dnaB"
                     /locus_tag="PXD88_001535"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6281104.1"
                     /translation="MSSLNKSLVQPHSIEAEFSVIGGLLLDNELFDEVSSKINEGDFY
                     NFTHRLLFKHISELIEAGKPADILTLDQYLTQKKVIEDLGGFAYLAEIVKNTPSTANI
                     HAYTDIVLLYSKQRQLLKLGQFIVDQTQSAKTPDKFEAVVDDIEKKITEFSLSDNTKS
                     AADLSDIFANMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLKKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADSLDDEE
                     WSKLTSAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPAAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSVEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEVYDADSPFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRTN
                     TTH"
     gene            4411..6057
                     /locus_tag="PXD88_001536"
     CDS             4411..6057
                     /locus_tag="PXD88_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6281105.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPTHYSSDVEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLGKSLSSRELSSELENDGYIISHALILKMERCVNYLYPHIPEVLF
                     SGLGHTQIDKLLAIRNNAEEVWAAHQFDTDVTFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALEGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQT
                     AKSEPLIKNENKAVTPQKAQHIIDEVIDDNESDDEQNNAITDLSQLGSSLLDNQDNQE
                     DYLSQIAHNFGLTPGMSIQEQREQRAEANGLTFACEGRQPVEDIWLIHPARQYRSEAY
                     SLALDIAESMGIDHLVEHIVKQPVDYTYAMKPADTELSPSALTLYSFLSMLQTAEHKD
                     ENSCVLDSKFLFELDDLTLVKIFRLIRVSRHIRQQGGEND"
     gene            6050..6607
                     /locus_tag="PXD88_001537"
     CDS             6050..6607
                     /locus_tag="PXD88_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL6281106.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMEILDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            6766..7956
                     /locus_tag="PXD88_001538"
     CDS             6766..7956
                     /locus_tag="PXD88_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281107.1"
                     /translation="MFSSTNKPTEHGLLFFGNQHETVPTRLLQDPCLTPRAKFAWQLI
                     KCNVQAFQGGLFPSYETLSKMLSDRPYAEAKLSEKVVTQTLYLLRLTRWLTLCETVRD
                     ERGYVQGNVYILHDEPVPILDAIQLNSDYLSFLDKCTKHKDSLINGVANHIVESLITD
                     KTKWHYVSHLDCLQSRYQIYQQQQLVKDKQPSQTEQELSKIQQNILTSTMEVRDFDEE
                     VRKKSSKNQTSNKGVRAKNEDKSLILDLLPLGKSDVQYRTLYINKYCTGEPSEITWPQ
                     EIPLTSLEQKLTAQAMKGLDLGLCQAILLEVQQRIIQKQDVKKPKGYLYTLIQRAKQG
                     EFKPYYFELGKNLPSQNQANNNSAHSIQKLTEQPTEKPVLTSADREQMASRMQKFRAE
                     LLLQ"
     gene            8135..8893
                     /locus_tag="PXD88_001539"
     CDS             8135..8893
                     /locus_tag="PXD88_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL6281108.1"
                     /translation="MTTQLDPQLGPLRSEITFTLHTQYAHKLWVGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKSSGITRRDYQEKNARYQAAIKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNTTVEEEQSVETHITAQTNESQK"
     gene            8902..9387
                     /locus_tag="PXD88_001540"
     CDS             8902..9387
                     /locus_tag="PXD88_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL6281109.1"
                     /translation="MNLISDEIYRQLVKDSGLNTSLKQLFSHFDTGSDYELLQEQFTQ
                     ARAYFMAAQDSMVQSVRQDLSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDKSVPVEVRKKVVAVEKDRILINMQISVFNHILRQLADCAEKLKEVDNAVAKSDLN
                     S"
     gene            9743..10195
                     /gene="ssb"
                     /locus_tag="PXD88_001541"
     CDS             9743..10195
                     /gene="ssb"
                     /locus_tag="PXD88_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6281110.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEGKLRTRKWQDQNGQERYTTEIQG
                     ELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF"
     gene            10502..10690
                     /locus_tag="PXD88_001542"
     CDS             10502..10690
                     /locus_tag="PXD88_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281111.1"
                     /translation="MSYDANDALNEIEEALSELERVAEDLINNNPNKESELRGQGVHQ
                     ATKHLRFRIRNIRRGEAI"
     gene            10731..11033
                     /locus_tag="PXD88_001543"
     CDS             10731..11033
                     /locus_tag="PXD88_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281112.1"
                     /translation="MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGAL
                     LRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE"
     gene            11033..12343
                     /locus_tag="PXD88_001544"
     CDS             11033..12343
                     /locus_tag="PXD88_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDL6281113.1"
                     /translation="MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIV
                     GFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQYI
                     ERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRC
                     VITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAMDMWRPYRQAVETMIPDAT
                     VIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFS
                     GWTLNYPEIGQAYELKEAFFEIWDCQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMG
                     NWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPR
                     YQRQRIPEGAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL"
     gene            complement(12439..13641)
                     /gene="tet(H)"
                     /locus_tag="PXD88_001545"
     CDS             complement(12439..13641)
                     /gene="tet(H)"
                     /locus_tag="PXD88_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(H)"
                     /protein_id="HDL6281114.1"
                     /translation="MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYG
                     VLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTTLWMLYIGRI
                     IAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISAHMP
                     FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATY
                     FIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLNIFFQAIVAGKLAQKWGEK
                     TTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQGYLSKSVDDNAQGK
                     LQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTT
                     PKAVISTP"
     gene            13733..14356
                     /gene="tetR(H)"
                     /locus_tag="PXD88_001546"
     CDS             13733..14356
                     /gene="tetR(H)"
                     /locus_tag="PXD88_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance transcriptional
                     repressor TetR(H)"
                     /protein_id="HDL6281115.1"
                     /translation="MAKLDKEQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWH
                     VKNKRALLDALAETILQKHHHHVLPLPNETWQDFLRNNAKSFRQALLMYRDGGKIHAG
                     TRPSESQFETSEQQLQFLCDAGFSLSQAVYALSSIAHFTLGSVLETQEHQESQKEREK
                     VETDTVAYPPLLTQAVAIMDSDNGDAAFLFVLDVMISGLETVLKSAK"
     gene            complement(14359..14496)
                     /locus_tag="PXD88_001547"
     CDS             complement(14359..14496)
                     /locus_tag="PXD88_001547"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281116.1"
                     /translation="MPENGVIFSDGIEDDYLQFNAGCIAHIGIADIQGQLISQKGRQR
                     I"
BASE COUNT         4594 a         2977 c         3045 g         3895 t
ORIGIN      
        1 gatatattat agcctcatca gacgcggggt ggagcagctt ggtagctcgt cgggctcata
       61 acccgaaggt cgctggttca aatccggccc ccgcaaccac attccaaacc ctcgatagtg
      121 aatcacatcg agggttttcg ttttatttgc caaaaaacag caaaaaataa ccgcttgttg
      181 actgcaaaag cttcctctcg ctttcatttc tcgttacact tctactacat ttacgctttt
      241 ttgattatta tgagcaatat tttaactgtt acccaactca actattccgt ccgccatttg
      301 ctcgaaatgg aaatgagcca tatttggcta accggcgaaa tctcaaattt cagccaacca
      361 gtttcggggc attggtatct cactttaaaa gatgacaaag cacaagtgcg ttgtgcgatg
      421 tttaaaatga aaaatgtaag agtgaatttt cgcccacaaa acggtatgca ggtgctggtg
      481 cgggcaagtg ttacactcta tgagccacga ggtgactatc agctcattat tgagagtatg
      541 caaccggcgg gcgaaggctt gttacagcag caatttgagc aacttaaagc aaaactttca
      601 gctcaaggct tgtttgctca agagcataaa aagccaattc ctacttttgt taaaaccgtt
      661 ggtattatta cctcctcaag cggagccgca ttacaagata ttttacatat tttgcaacga
      721 cgagatccga gcttatcagt ggttatttac ccggctctcg tgcaaggcaa agaagcaacg
      781 caagatattg tgaatatgat tgaactggca aaccgccgca atgagtgtga tgtattaatt
      841 gtcgggcgag gtggcggttc attagaggat ttatggtgtt tcaacgaaga gagtgtcgct
      901 tatgccattt atcattcaca aatcccgatt atcagtgcgg tgggacacga aaccgatgtg
      961 accattgctg attttgttgc agatttgcgc gcaccaacgc cttcggctgc tgcggaatta
     1021 gtcagcagag atcaaaatga attgaaacgc caattacaac atcagtttga taaagtgaat
     1081 ttagcctttg accgagtttg gaaccataaa tttaaccgtt tccaacaact ccccttacgc
     1141 ctgaatgctc agcatccaag caaacaaatt caatcgcaac agcaacgttt tgattatatg
     1201 gaataccgcc tcgagcaggc aatttatgca cttgttgcag ccaaaaagca ggtggggaaa
     1261 gagctaaatg tccgtttaat tcaccaacat ccgcaaaagc agattgaacg ccaatcccaa
     1321 atgcttaagc aattggagct gaaactccat tggcaaatgg agcagcaact cagcaaaaaa
     1381 cagcaaaaat ggaaaaacat tacgcaacgg tttgaacgca acccgctacc ttatcaactt
     1441 tatcagcaac aaacgatggt ggcaaaaatg tcgcaacgct tggcttattc tatcgaaaaa
     1501 ataatgctga aagagcagcg acattttcaa gagttatgca ctaaacttga tggacttagc
     1561 ccattgaaaa tcttgaccag aggctactca attacccaaa ctaaagacgg taaaacgctt
     1621 acttcaacag aaaatattga acgtggtgag gctattatca cccaactaaa aacaggaaaa
     1681 ataataagtc aagtagtgga ttttttgtag gggaaatttt gaacgctgcc aatttttaaa
     1741 attatttata gtaaaatcag taggttaaat atttataaac agggttgttc acttagttat
     1801 ccacaggtga tgtgcataac tatttttgta aagatgaatt gagtgctgat ttttaaatca
     1861 accgatttca aaaggcattt ttacgcttgc acaagcggtc atatttccct ataatcgtgc
     1921 aaaaattaag ccagtgtggc gaaatcggta gacgcagcgg attcaaaatc ttatgcgtaa
     1981 actgatagga catacaggcg attgaataaa aagcactctt agcctgagtg atgaaattgg
     2041 tagacatgac ggattcaaaa tccgttggtg aataaccgtg tcggttcgag tccgacctca
     2101 ggcaccattt gaatcacact tgtagtttct ctctttcaaa taatcaattc aaatacaccg
     2161 tattaatggc caatactcct taacccttgt taagagagta aattatgaaa ccattacaaa
     2221 acggtacaaa caaacctttt accattacta ttgcttcaac taaaggtggc tctgccaaga
     2281 gtacgaatgc tgctaacatt ggtgcattct gtgcagaaca cggtctaaga acccttctta
     2341 ttgataccga tacccaaccc acattaagct cttattatga gttggaatat caagctcccg
     2401 gtggaactta cgaatttctg cattttaaag atgtagatcc tacccacatt atttctagaa
     2461 cgactatccc aaatcttgac ttgatccagt ctaatgaccc gtcaaataaa atcagcccaa
     2521 tgctgagaga ttcacctgac ggtgcattac gttttagttt actgctccag aaaattgaag
     2581 gttacgatgt catcattatt gacactcgtg gtaccagaga tattactgtc gatatgtctg
     2641 tattggcagc agatgtttta ttctgtccta ttcttcccca cattttatct gctaaggagt
     2701 ttattcgtgg cacgattgga atgtatcaag acctcgaaac ctttacggca tttggcttta
     2761 ccctaccacc gctgaaagcg atgattaact gtgttgatca cactaaagat gtcaaattgg
     2821 tttccgacta ccttcatact ctcttccaaa atgagtttga tgaaaacaaa acattgctgg
     2881 aattttcggt acctgaccgc gtggcatatc gtgaagcggc aactttttca aaaccggtct
     2941 atcgtcagag ccaagctgaa tatgaaacga tcagtcagct ttgtgcgtta ctgatgccac
     3001 agtttgcaaa ctctcacttc tcagcataga gggagaatgt atgtctagct taaataaatc
     3061 acttgtacag ccgcattcta tagaggctga attttcagta atcggtggat tactcttgga
     3121 taatgaactc tttgatgaag tgagtagcaa aatcaatgag ggggattttt ataattttac
     3181 tcaccgtcta ctgtttaagc atatttccga attgattgaa gccggtaaac cagcagatat
     3241 attgacattg gatcaatacc ttacccagaa aaaagtgatc gaggatttgg gcggatttgc
     3301 ttatcttgca gaaatagtca aaaacactcc atctacagct aatatccacg cttatacgga
     3361 tatcgttctc ttatatagta aacagcgaca gcttttaaaa ctggggcagt ttattgttga
     3421 tcagacacag agtgcgaaaa cgccagataa gtttgaagct gttgttgatg acattgagaa
     3481 aaaaattact gagtttagcc tatcagataa tacaaaatct gcagcagatt taagtgatat
     3541 ttttgccaat atgctctctc gtatggaact ctcggctaaa aatggagatc ctgtgacagg
     3601 tactccaact ggtattcaag gtattgacga agcgacaaca ggtggacagc caggcgattt
     3661 aatcgtgatt ggtgcccgcc cttctatggg aaaaaccgca ttttctcaaa ctatcgctta
     3721 ccatacactt aaaaaattcg agtcggctcc tgtgttctat cacagcatgg aaatgccggc
     3781 agatcagatt ttacaacgtt ttctagctat gcgtgccaga gtgggattgc aaaatattag
     3841 acaggcagac agtttggatg atgaggaatg gtcaaaacta acctcagcaa tgggctatat
     3901 cctagaacat tggaaaaatc gtttagttat tgatgatgaa ggtagtctca cgcctcaaaa
     3961 attacgcact aaagttcgac aaaatgctcg taaatatggc aaaccggcag ctattttcat
     4021 tgattacatt cagttaatgc aaacctcgca acgttatgaa aatcgcaatt tagaaattgc
     4081 caacatctct cgttcactca aattactggc aaaagagatg gattgtccgg tttatgccct
     4141 ctctcagctg aaccggtctg tggaacaacg tgccaataaa cgcccgatca actctgattt
     4201 acgggaatcc ggctcacttg agcaagatgc cgatgtcatt ttattcatct accgagatga
     4261 agtttatgat gcggattctc cgtttaaagg cactgctgaa atcattatcg gcaagcaaag
     4321 aaacggacca cttacttccg taatgacgaa tttcagaagt gaatttgccc tatttgaaaa
     4381 cagaacaaac acaacgcatt aggatagatt atgacaaaag atgaaaaaag actggcagcg
     4441 atagcaaaag gattaaatgt ttcacctatt tcaaatacgg ctccatccta ccaaacagcc
     4501 acaccaacgc attacagtag cgatgttgaa tatattacag taacgctgga taagttgcgt
     4561 ccgtatgagc ataaccctcg gaaaacccgt aaccctaact ttgagatgat caaagagtct
     4621 attcgtcgtc gagggttaga tcataagccg aatatcaccc gtcgtccggg agaagatttc
     4681 tatattatcg ctgacggtgg taatactcgt attcaggcac tcaaggagct ctttaccgag
     4741 accaaagatc caaaattttg gtccatcagt tgtcaatata aaccttggca aggtgatact
     4801 gccgacagtg tcgaagctga actcaattta cttatcgggc atttgattga aaatgatacc
     4861 cgtgcggatt tgtcatttat tgaaaaagca ttggggattt tgcaggcgaa ggagtattac
     4921 gagaaaaaat taggtaagtc tctttcttcg agagagttat cttctgagtt agaaaatgat
     4981 ggatatatta tctctcatgc tctcattctt aaaatggaac gttgtgttaa ttacttatat
     5041 ccacatatac cagaagttct ttttagtggt cttggtcata cacagatcga taaactatta
     5101 gctattcgta ataatgctga agaggtatgg gcagcccatc aatttgatac tgatgttact
     5161 tttgaatcgc tctggtcaga aaatttatcc aaatttaatg aggctacacc atttcaagca
     5221 aaagaattcc aaagtgaatt gattacggca atggttgaag ctttagaggg taaagtgagt
     5281 tttgaaacac tttatctgga tattgactta gatgaacaaa aattcaaaaa aatagcggct
     5341 aaacaacaag aaattgataa tttagttgaa aaaacagtcg atcaaatcaa taccagacag
     5401 gaacaacaaa ctgcaaaatc tgaacctctc atcaaaaatg aaaataaagc cgttactccc
     5461 caaaaagctc aacatattat tgatgaggta attgatgata acgaaagtga tgatgagcag
     5521 aataacgcta ttactgattt atctcagctt ggctcttcat tgctcgataa ccaagataat
     5581 caagaagatt atctatccca aattgcccat aactttggac tcactccggg aatgagtatt
     5641 caagaacagc gagagcaacg agctgaagcg aatggactga cttttgcttg tgaaggtcgc
     5701 caaccggttg aagatatttg gttgattcac cccgcacgtc aatatcgctc agaggcctac
     5761 tcactggcct tagatattgc cgaaagtatg ggcattgacc atctggttga acatattgtg
     5821 aaacaaccag tggattacac ttatgcaatg aaaccggcag atactgaact ttcaccgtct
     5881 gctttaacac tctactcatt cctctcaatg ttacagactg ctgaacataa agatgaaaat
     5941 agctgtgtct tagattccaa attcctgttt gagcttgatg atcttacctt agtcaaaatt
     6001 ttccgtctca ttcgggtcag tcgccatatt cgccaacaag gaggagaaaa tgattaagcc
     6061 gattaccgta aatgaagcat tgattggtaa cgccctgctc aatattaaag agggaaatat
     6121 ccatccttgt ctaaaaatgg gattttctga ggagcaacta aaagcgatca ataatctcag
     6181 tattgatgaa attatggata ttagcaactc cgttgtctct tttgctaagg tggagattaa
     6241 tcacgaaacc ttttggaaat tactggctat tgcacaagcc aatactcaac agcgacaaat
     6301 tattgaccga gcattattgc tcggagcctc tattgaaatg ttgcaccagt attttggttt
     6361 atcaacctct gaagtctcgg ctcgccgtca attactcggt atcgaagaaa aaatgggacg
     6421 aaaagcggca gcaagtgatg aagaatctac ccatatttgg gaaatttggc aaagatacaa
     6481 acaacgaatg gaaatcctag attcacaaga aggattagag cttctatgtc tgattgctga
     6541 ggaaggcaat atgaatctaa cggttgtttg gaaactggtt tccgaatggt attcaaaaca
     6601 taagtaaaaa ataaatgccc cgaagttgga gctttggggc attcgatatt gagtcttgta
     6661 tctctatctt atgaattaca aggactttgc agaagtcccg tgcattatag ccataggaga
     6721 gagaatagca agagaaaaac tcttttatcc tggtggagag aaacaatgtt tagcagcacg
     6781 aataagccaa cagagcatgg attgctattt tttggcaacc aacacgaaac agtccctact
     6841 cgattattac aagatccctg ccttacacca agagcaaagt ttgcttggca gctcattaag
     6901 tgcaatgttc aagcctttca aggaggatta tttccctctt atgagacgct cagcaaaatg
     6961 ttatccgata gaccttatgc ggaggctaaa ttatcggaaa aagtcgtgac tcaaacactc
     7021 tatttactcc gtcttactcg ctggcttact ttatgtgaaa cagtgcgtga tgagcgaggt
     7081 tatgtacaag gtaatgttta tatcctacat gatgaacctg tgccaatttt agatgcaatt
     7141 caattaaata gcgactatct ctctttttta gataaatgca ccaaacataa agatagcctt
     7201 attaatggtg tggcaaatca tattgttgaa agtctaataa cagacaaaac caaatggcac
     7261 tatgtctctc atttagactg tttacaaagt cgttatcaga tataccagca acagcagctg
     7321 gtgaaagata aacagccatc gcaaacagaa caagaattaa gcaaaattca acaaaacatc
     7381 ctaacttcca ctatggaagt tagggatttt gatgaggaag tcaggaaaaa atcctctaaa
     7441 aaccagactt ccaataaggg agttagggct aaaaatgaag ataagtcatt gattttagac
     7501 ttacttccat tagggaagtc agatgtacag taccgtactt tatatattaa taagtactgt
     7561 actggggaac cgagcgaaat tacttggcca caagaaatcc cattaacttc acttgaacaa
     7621 aaacttactg cacaggcaat gaagggatta gacctcggtt tatgccaagc tattttgttg
     7681 gaagtacaac aacgcattat tcaaaagcag gatgtgaaaa aaccgaaagg ttatctctat
     7741 acgcttatcc agcgggcgaa gcagggtgaa tttaaaccct actattttga attaggaaaa
     7801 aatcttccct cacagaatca ggctaacaat aattctgctc attctataca aaaactgact
     7861 gagcagccta ctgagaaacc ggtcttaact tcagcagaca gagagcaaat ggctagtcgt
     7921 atgcagaagt ttagagctga attactttta caataagatt aaaaaacaat cactgttaag
     7981 gggcttaata gtgagtgaaa aataatcagt gtgtaccagg tacacaatgg ataaaaaata
     8041 aacagcgtag gcagtgtctg caaagattaa aaaacagaca atggaaagcc cctttccaaa
     8101 gactaaaaaa taatcaaata aacaaggagc atatatgacc actcaattag atcctcaact
     8161 tggtccactt cgtagtgaga tcacttttac gttacatacc caatatgccc ataaattatg
     8221 ggtggggcga ccaatgattc gtaatgagga aggcaaagta actcaatcct ccattatcag
     8281 cgtaccaaat tgctttgcaa tgctaaccca aattcaacgg gctgcatcag aagatgatcc
     8341 ttatgctgac gattatctga ttcaatttga agaaagtgtg atcaattatc ggaaggaaat
     8401 ccaaaagctc accaacgaca ttgtcacgct ctacgccaaa atgttgccgg agggaatttc
     8461 tattgaacgc tgtgccaata tttccccgat ttcttacccg atttatgtta attcacagct
     8521 agggtatcaa ttactctact tacttggtga ttttgatagc ctttgccgtt cagtaatgac
     8581 ggcagctcat attgcgatta tcaatcgtgc agaagctcaa gattggattg aagctggtgc
     8641 aaggttaatc cggaaatgtt ttgggatcgt tgagcgttat aagagttcag gaatcactcg
     8701 tcgggactat caagaaaaga atgctcgcta tcaagctgcg ataaaacgaa tgggctatac
     8761 actctcagat gctgtactta ccggtgagca tcgtgctgag tttgctccct tcatcaagca
     8821 aaacactact gttgaagaag agcaatccgt agaaacccat atcacggcac agacaaatga
     8881 atctcaaaaa taaggagtga tatgaacctc atctctgatg aaatttatcg gcaattagtc
     8941 aaagattctg ggctgaatac ttctctgaaa cagctattta gccattttga cactggctca
     9001 gactatgaac ttttgcaaga acagttcact caagctcggg cttattttat ggctgcacag
     9061 gatagtatgg tgcagtctgt gcggcaggat ctttcacctt tggctgttta tatgattaag
     9121 gataaggcct catcctcagg cggtacattt ttacgctggc gtagtatgca aaatgccaga
     9181 accggtggca cagtttggca gccgattgta gatgataagt ctgtcccagt ggaggtgagg
     9241 aaaaaagttg tcgcagtaga aaaagacagg attttgatta atatgcagat ttcggtgttt
     9301 aatcatattt tgcgacagtt ggcagattgt gctgaaaagt tgaaagaggt agataatgcc
     9361 gttgcgaaat cagacttaaa ttcgtagtaa atttatatat aacaactcct atattggttg
     9421 tgtgtaaacg ccaaccacgg tgggctgacg tggtaaaaca aacagtccgt taattaggac
     9481 atattcaagt ttgtaatacc tgaaaatccg gtttgtaatc cctgaaaaag tgcagtttgt
     9541 aaatcctgca ttaaaaggcc ttttaaaggt aagggtacaa gccccttacc ttcacgaaga
     9601 aaaagccttt acaacggagg aataagtgat tgcacacgta aaaatgaaaa attcactcta
     9661 accaaatttt aattaaatac ttttttctta ggctgaatca agtttaatag aactaactta
     9721 atttattgaa ggagtaaata cgatggcagg aatcaataaa gtgattattg tcggtaatct
     9781 tggcaacgat cctgaaatgc ggactatgcc taatggtgaa gcagttgcta atattagtgt
     9841 ggcaacttct gaaagttgga cggataaaaa taccggagaa cgtcgagaag tcactgaatg
     9901 gcatcgtatc gttttttatc gccgttatgc tgaaatttgt ggtcagtacc tacgtaaagg
     9961 ctctaaaatt tatatcgaag gaaaattacg gacacgtaag tggcaagacc aaaacgggca
    10021 agagcgttat acaaccgaaa tccaaggtga actattacaa atgttagata gccgtaatgc
    10081 tacaaatagc gtagatggac aacaatctaa ctatcaagct atgagccaat ctccaaaagc
    10141 aacacatcca caagatttac caatggataa ctttgatgat gatattccgt tctgagttac
    10201 atataattta aaactgtaaa ataaaaccca tataaatata gagaaccctt tattttaaaa
    10261 gggttctctt tttttacatt aatttcgaca caacatcttt aatttgatag tatttatata
    10321 tgatattttg ggtatccgga tttagcggtt gatctgcgct agacgtaatt ttgtaaataa
    10381 accggatttt agggttgacg gaaaaggcca gatgccctaa tattagattc aagagctgag
    10441 aacaacggct cgggcataag cccaacgggc gcaccgccga acttggtgca ggatagaagc
    10501 catgtcatac gatgcaaatg atgcgctgaa tgaaatcgaa gaggcgctta gcgagcttga
    10561 aagggttgct gaagacctaa tcaacaacaa cccgaataaa gaatcagaat tacgcggcca
    10621 aggggttcac caagcgacaa agcacctccg ttttcgtatt cgcaacatcc gccgcggcga
    10681 agcaatttga ctaacatgcc gccctagggg cggctttcag cgaggtcagc atgaaaatca
    10741 aactctattt tccggacgag tctatcgcca cgataaagcg aatggggctt cgccaaatgt
    10801 ctcccgagac tctcaggtgg actgccgatc atccgtcaag cagctatggt atgggcgctt
    10861 tgctcagagg caagtctggt gaaatccttg atgggaagtc ttttgctgca atggtgcatg
    10921 cctttggcgc gtggattgaa acagacagtg aagataccag tcgtcgagtt cataacgcgc
    10981 tagtcactgc tgccactggc accgaggaat cggttaaggt ggcaaaggag taatgtcgaa
    11041 tatcctcaac tggcctgatt acaaagtgct ccaggtatcc gaactggagc acgattacca
    11101 ggtacacgcc gaagtttccg aaccgcctac gcagtgcccc cactgcaatc atcctgaaat
    11161 cgtcggcttt ggtcgccgtg atgaggtgat catggataca cccgtccacg gaaggcgtac
    11221 cggcatcatg cttaaccgcc gtcgctatcg ctgccagtct tgccgaaaga cgtttctgga
    11281 gcctgtaccg cacaaagacg aaaagcggca gatgaccaac cgcctgatcc agtacatcga
    11341 gcgcgagagc ctgcgccgca cgttctccag tgttgccgag gatgtgggcg tcgatgaaaa
    11401 gaccgtccgt aacattttca acgactattg tgaacgcctc gaaaagacgc tcaattttga
    11461 aatgccgcag tggttgggta tcgacgaaat ccacatcatc aaaccccgct gcgtgatcac
    11521 caacattcag cagcagacca ttgtggacat gctggataac cgcaataaaa ccaccgtcac
    11581 ccgctacctg agcaaacgca ctgaccgcga cctggtgcgc tacgtggcaa tggatatgtg
    11641 gaggccgtac cggcaagcag tagaaaccat gattcctgac gccacggtga tcatcgacaa
    11701 gttccacgtt gtcaggatgg cgaacgaatc actggaacgc gccagaaaag ccatcagaag
    11761 cgccctgacg ccacagcagc gccgtgggtt gatgcgagat aggtttgtcc tactgaaacg
    11821 ccgtcacgag ctgacagatg ccgaatacat gcgtttttca ggctggacat tgaattaccc
    11881 tgagattggc caagcctacg aactgaaaga agcctttttc gagatttggg actgtcagac
    11941 ccggcaccag gcacaggagg catattactc ttggctgcga cagattacgc cggaaatgaa
    12001 agcccactat gacccgctta tcaaagcgat gggcaactgg cacgatgaca ttttcgctta
    12061 cttcgaccac cccattacca acgcctacac cgagtcactg aacaacctga ttcgtgttgt
    12121 taatcgtgtt ggccgtggct acagctttga agcgctgcga gccaagatcc tgtttactga
    12181 gggcttccag aagatcaaga agccacgcta tcagcgtcaa cggatacccg agggcgctat
    12241 gggcaggatg ccgttctatg gcgttgccga agcggggcca tccactaact acggcgctga
    12301 catatcaaca ctggtgcggg agattgaggc ggggcgttta tagccctgtt tcaaccctgt
    12361 aatccggata cccaaataaa gtcctatcaa cgttattaag agcggacagg acttttatga
    12421 tctttataat ttctagtatt aaggggttga aataacagct ttaggtgtgg tttttctttg
    12481 gtgaaaataa gcggtaataa gcaacatagc ataaagtatt gcccccatca gccataacag
    12541 accatcccaa taagcgacgc tataactata aataaaggca aataaaaggg gaccaatgat
    12601 cccggtaata ttggttaggc tcaccagagt accttgtaat ttcccttgcg cattatcatc
    12661 gacagatttt gataaataac cttgtaatgc gggttgcccc atacctcctg ccgctaagca
    12721 aattaatgct ggtaagatga cccaaacgtg gcctatccac gctaataata aacagcccat
    12781 catatcaata gacatactga tcataatggt ggttttttcg ccccattttt gtgccaattt
    12841 cccagcgaca atcgcctgaa agaaaatatt taatacaccc agaaccgcca aagacatacc
    12901 gatagaagtt gtgttccaat caaaacgata ttgtgtaaac agcacccaga tggtggcagg
    12961 aatttgcccg ataagctgga taataaaata ggttgctaac caaaagtaga ggcttttctt
    13021 aaaaaaaaca gtgactgtat ttgaggcagt ttggttttca ggtgtcctat tggcaacaag
    13081 cgcttctctt ttttgtgttt ctcggaaaaa gagcaaagag agtattaata atatcgagtg
    13141 tgaaatagcg gcaaaaataa atggcatatg agcactgata tcacctaata atccccctag
    13201 cattgggccg ataataaggc caacaccaaa agcaccacct aagaaaccaa aatagcgagt
    13261 tcgattttta gcgggagtca catcactcat cgctgatgca catacggcac ctgttgcgcc
    13321 tgtgatcccc gcaatgatgc gcccaatata gagcatccaa agtgtggttg agaatgccat
    13381 taaaagatag tcgagtgccg cgcctaaaag ggaaaacagc aagatgggtt ttctgccgta
    13441 tttatcagac agtcgtccta gaataggagc aaaaataacc tgcatggtag catagagcgc
    13501 taatagcaca ccgtaatggg ttgccagtga attttcactg acaaattcat ttaatagagt
    13561 agggagtact ggcatgataa gcccgatacc aatggcatct aatacggtga tcagcagtat
    13621 aataataatt gatttattca ttgagatcct aaaaatctat cagtgataga gtgggtgtaa
    13681 tatatctcta tcagtgatag attgtcaagg ctattttatt ttgaggtagg taatggcaaa
    13741 gctagataaa gaacaagtta ttgataatgc gttgatttta cttaatgaag ttggtattga
    13801 aggattaaca acgcgtaagc tggcgcaaaa aataggtgtg gaacaaccca cattgtattg
    13861 gcatgtaaaa aataaacgcg ctttgttaga tgcattagca gaaactattt tgcaaaagca
    13921 ccatcatcat gttttgccat tgccgaatga aacatggcag gactttttgc gaaataacgc
    13981 gaaaagcttc cgccaagcct tattaatgta tcgtgatggt ggcaaaattc atgcgggaac
    14041 acgcccctct gaaagtcaat ttgagacatc agaacagcaa ctacagtttt tgtgtgatgc
    14101 tgggtttagt ctatctcaag ccgtgtatgc attaagctct attgcgcatt ttacattagg
    14161 ctccgtactg gaaactcaag agcatcaaga aagccaaaaa gagcgtgaaa aagtagagac
    14221 ggatactgtt gcctatccgc cattattaac ccaagccgtt gcaattatgg atagtgataa
    14281 tggtgatgct gcatttttgt ttgtccttga tgtgatgatc tctggacttg aaacagtatt
    14341 aaagagcgct aaataaatct aaattcgctg acgccctttt tggctaatta gttgcccttg
    14401 tatgtcagcg ataccaatgt gagcaataca acctgcatta aattgtaaat agtcatcttc
    14461 gatgccatca gagaaaatta cgccattctc tggcatcaaa gatcctaatt g
//
LOCUS       DANLXK010000064        14146 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.064, whole genome shotgun sequence.
ACCESSION   DANLXK010000064 DANLXK010000000
VERSION     DANLXK010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14146
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            16..1098
                     /gene="serC"
                     /locus_tag="PXD88_001548"
     CDS             16..1098
                     /gene="serC"
                     /locus_tag="PXD88_001548"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL6281117.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
     gene            complement(1155..2132)
                     /locus_tag="PXD88_001549"
     CDS             complement(1155..2132)
                     /locus_tag="PXD88_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL6281118.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            2244..4811
                     /gene="glnD"
                     /locus_tag="PXD88_001550"
     CDS             2244..4811
                     /gene="glnD"
                     /locus_tag="PXD88_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL6281119.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
     gene            complement(4988..5746)
                     /locus_tag="PXD88_001551"
     CDS             complement(4988..5746)
                     /locus_tag="PXD88_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL6281120.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHHI"
     gene            complement(5766..6642)
                     /locus_tag="PXD88_001552"
                     /pseudo
     CDS             complement(5766..6642)
                     /locus_tag="PXD88_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            complement(6695..7663)
                     /locus_tag="PXD88_001553"
     CDS             complement(6695..7663)
                     /locus_tag="PXD88_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL6281121.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            complement(7757..8656)
                     /locus_tag="PXD88_001554"
     CDS             complement(7757..8656)
                     /locus_tag="PXD88_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6281122.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAV
                     FDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLII
                     VGTRTAKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINT
                     LLDQTKAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQP
                     VSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASY
                     LAPGGYEQMKTDLTNIKTAFEKK"
     gene            8830..10293
                     /locus_tag="PXD88_001555"
     CDS             8830..10293
                     /locus_tag="PXD88_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6281123.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            10283..10588
                     /locus_tag="PXD88_001556"
     CDS             10283..10588
                     /locus_tag="PXD88_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL6281124.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            10588..11037
                     /gene="nrdR"
                     /locus_tag="PXD88_001557"
     CDS             10588..11037
                     /gene="nrdR"
                     /locus_tag="PXD88_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL6281125.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(11111..11320)
                     /locus_tag="PXD88_001558"
     CDS             complement(11111..11320)
                     /locus_tag="PXD88_001558"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6281126.1"
                     /translation="MPLNIWQKAVALLADSTVDRLVAENGLVEVLGETENPKFDLTMI
                     YAAHRYPSSIVRAFVGFVLEQVKAN"
     gene            complement(11262..11972)
                     /locus_tag="PXD88_001559"
     CDS             complement(11262..11972)
                     /locus_tag="PXD88_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6281127.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
     gene            complement(11969..>14146)
                     /locus_tag="PXD88_001560"
     CDS             complement(11969..>14146)
                     /locus_tag="PXD88_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281128.1"
                     /translation="YSRVGYDKGVWEALSVLLPERFDFEVFEVIDYSKEWSWFEIIVE
                     NLFWRQPEKINMQKLHQFFKNSPYFNQATWINILYQLATEINHPLNIKYLHNKLYSFS
                     LADRDEIWTAFIALESDQCPAIERLLTWCQKSSGQENIEPEALLLGAIAVSWLFTSTD
                     KRSRNGYINALAHLLWNRLEIALALFKEFIEVNDPYVMEGILSAIHGAVAYSENSSGL
                     KALALEIDNQIFNQPETEEIYPNVLVRDYARHIIEYSLQKDEYSSDDIEIIRERITPP
                     YRSSFPQNLPTNEEIDKKYHSDGQRIIIRSMTTEYGRGMCGYGDFGRYTFEAKFRNWE
                     SYKFGNLINVDLLSNYACQMIFEQFGYDDKKHLEFDKETRSRYWRRDDTNKIERIGKK
                     YQWLALYEILARVMDNFPTFSNRYADEIGLEYITNLDNFYLPKTQIKIVPPTKTDVFF
                     QYINQKQCKTKHYFTIQNDELIDDWVKINDFPDVSNLLEVTINDEQWLVLERHDDFRE
                     LAKFGQKETYDRQMWLQIRSYLVKESQFSKAKNWLAQQDFMERWMPEGNEHYGMNIHQ
                     FFAENTLNEWQEIYRHRENKSPSFKVIPSVDSHTWESTYGNDGISFYAPIPMLYHGMK
                     MKNAIKDGYWVDLQNNLVCFNPEINEKFQNSLLVKKDKFLDFLKEHKLKLVWTVLGEK
                     HAYKESKFLQELSGVYYLYGKNQQVQGSIKHFIQEIEHWGEKQ"
BASE COUNT         4537 a         2779 c         2761 g         4069 t
ORIGIN      
        1 tatacgaggt gaaaaatgac agagatatat aacttcagtg ccggcccggc aatgatgccg
       61 aaaaaagtac tcgaaaaagc gcaacaagaa ttattaaatt ggctagacca aggcacatca
      121 gtgatggaag tcagccaccg tggaaagcta tttatggagc tggcggcaca atctgaagca
      181 gatttacgca agctgtataa tgtgccggac aattatcgta ttctatttct tcaaggtggt
      241 gcaagggggc aatttgcagc cattccaatg aatttaatcg gtaaaaaagg caaagcgctt
      301 taccttaatt cagggcattg gtcggcaaca gcagcaaaag aagcacgtaa ctttgcggaa
      361 attgatgaaa tcaatatttt agagactgaa ccgcaactta aagtgagtcg tttagatttc
      421 agcgatattg cagagcaata tgattatatc cattattgca ccaatgaaac catcagtggg
      481 gtagaaattt tcgatattcc gaatgtcgga aataccccgt tagtggcaga tatgtcgtct
      541 aatatcttag cccgagggat tgatatcaac aaatttggag taatttatgc cggagcgcaa
      601 aaaaatctag ggcctgctgg cattacgatt gtgattattc gtgatgattt aattggcaat
      661 gcacgcaaag ataccccatc tatttggaat tatgcaactc agcgagatgc tgattcgatg
      721 attaataccc cgccaacttt tgcttggtat ttatgttctt tagtgttcca acatttactg
      781 gcagagggtg gtttgaaagc tactgaagaa cgtaatcttg ctaaagctac attgctttat
      841 gagtatttgg atagttcaac attctattac aatacggtag cacacgaaaa ccgttcctta
      901 atgaatgtaa cctttaccac gggtaatgac gagctaaatg caaaatttgt ggcagaagcg
      961 accgcttgtg gtttacaggc attgaaaggc cataaagtat taggtggaat gcgtgcctca
     1021 atttataacg caatgccgat tgatggggta aaagcactca ttgaatttat gaaggtattt
     1081 gaacaacgta atgcttaatt caagcttaag aatataaatt aaagagccac gtttgtggct
     1141 ctttgaattt ggcactagcc cgcagtttta aacaaataga aattatagcc tacataagcg
     1201 gcaaagagta ataagccctc taaccgatta attctgccac cttctgtccg acgatagagg
     1261 ttgatcccga aaatgaataa taagaaggtg agagccgaca tcatcaagac atcgcgagaa
     1321 aacacttccg ctgaaacttg cattggttct atagcaccgg caatccccac cacggctaac
     1381 gtattaaata agttagaacc gataatgtta cctaaagcta aatccacttc tcctttacga
     1441 gcagctgcaa tagaagaggc taattcaggt agtgaggtgc ctaccgccac aatagtaagc
     1501 ccgattacca aatcactcac accaaaaaat ttagccactt caactgctcc ccagactaag
     1561 aattgggaac taattactag cgatactaaa ccaataatta gccaaagaat ggattttcct
     1621 aatcccatct tagcactatt ggttaattct gcatcaacat ctaagcttaa tgcatcattt
     1681 ttacttttca ttgcggtaat aattgtccac gccatatata caaaaaacac agcaagtaaa
     1741 ataatcgcat caagttgagt gacgtttgca tcataaacca aataagcaga aagcagggtg
     1801 acagccagta aaatcggcaa ctcttttttt aacacatcgg aattaactga tagtggttta
     1861 attattgcgg ttaaacctaa aatcagcgca atattggtaa tgttagaacc gtaggcatta
     1921 ccgagagcga tacccggcga tccgcttaat gcagaagatg cagatacgag catctccggt
     1981 gcagatgtac caaaaccaat gaccacaata ccgattaaca atggtgtcat accaaaatgg
     2041 cgagccgtag aggctgcccc ttccacaaaa cgatccgcac tccaaactaa tataattaag
     2101 ccaccgataa tagcggcaac agcaagtgtc ataaactatc cttttagatg aaaaacataa
     2161 aggcattata agcattttag ccaaaataaa tataggcaaa cgaaaataaa tgacctatta
     2221 ttttgccagt ttaggaagag attatgatga aaaacagcaa cgaattaaaa acgcttttat
     2281 cagcatttac ggagcaacag cggcaagcat ttcaatccga aaatgtactc agcttacttg
     2341 cacaacgtag ccaattttat gaccaactac tgcaagcact ttggcaagat tttggactcg
     2401 ctcaatatga acatattacc ctattagcgg taggggggta cggacgtgag gagatgtttc
     2461 cgctttcgga tctggatatc ttagtgttaa ctgaaaaacc gctagaagag gctattcagc
     2521 agcgtttaaa cgaactattt gccttgcttt gggacagcaa actgcaactt ggcaccagtg
     2581 tgcgtacgct cgaagaatgt attcagattg ggaaagcaga aatttcggtt gccactaata
     2641 tgttggaagg gcgattttta ttgggtaata aatcgctttg gctaagatta aaagaagcac
     2701 tttatcagcc ggatttctgg gatattaaag cgttttttag agcgaaaatg gcggaaaaaa
     2761 atgagcgtta tgcacgttat cataatacta gctataacct tgagccagat ctcaaacata
     2821 gcccgggagg attgcgagat ctgcatttaa tctcttggat tatgctacgg cattatggtg
     2881 tatcttcttt tgtcgatctc ctcaataaag ggctacttta cccggaagaa tataaggagc
     2941 tgatcgcagc acaagcggta ctttttcgga tgcgttttgc acttcatttg caactgaaac
     3001 gttacgataa tcgccttcgg tttgacagac aattacaact gagtgaaata ttaggctacc
     3061 aaggcgaagc aaatcaagcg gtggaattaa tgatgcgaga ttattttcaa gccacaaaat
     3121 ctatttcgca actgagccaa ttattgttaa acagttttga acaagcctat gtaaacgagt
     3181 tgcaaaaaaa tgcacaaaaa caaccgcttg atcagtattt ttatcggcaa gaacagcaat
     3241 tgtttgtggt cgaacgcaaa atatttaaaa cccaacccac aacaatgttg gatctctttt
     3301 ttcatcttac taatgaccct acgttaatag cgaatgccga caccttacgt cagttgagac
     3361 tgtgtttaca gcaacaacac gagcctatgt gctttttgcc tgaaatgcga gagaaattcg
     3421 tacagctttt tgctcaaccg aaagtcataa gccgagcaat agttccaatg caccaactgg
     3481 gttttttaag tgcttatcta ccgcaatgga aggggatcga agggctaatg caattcgacc
     3541 tattccatat ttatacagtc gatgagcata cggtcagagt catgttaaat ttagaaaatt
     3601 ttagcgaaga tccaagtcgg gcgtttttcc cactatgtca tcagctattt gcaacgcttt
     3661 ctgagaaacc gttgctctat cttgcggctc ttttccacga tattggcaag ggtagagagg
     3721 gcgaacacgc tcaagttggt gcgctggata tgcgagaatt tgcggaacta cacggttttt
     3781 ctcaagcaca aatcaatgat atggtttggc tggtggcaga gcatttgaca atgtcgatca
     3841 ccgcacaaag acgagatatc cacgatccgc aaatcatcag cgaatttgca aaaaaagtgc
     3901 aaaatcagac cgctttatct tcactacttt gtttaacggt tgcagatatt tgtgcaacca
     3961 gtgagagcct ctggaatgat tggaaagcct cgctgtttac ccaattatat caatttacgc
     4021 tacagcaact ggctcaaaat ttgaattatc aagcagtggc acaagagcat cgcttgcaag
     4081 cattagaact gatgaagttc gtgctttcag ctgatgagcg aatagcatta aacgcatttt
     4141 ggcaaccttg cccggagcgt tattttcttc accatacacc gactcagttg gtatggcacg
     4201 ctctgcatta tgtaaaaact cgccggttgc cgatggtttt aatcagtaat gaatatgccc
     4261 gtggtggtac agaaattttt gtatgttgcc aagatcaacc tcaactgttt gctcgaatcg
     4321 cccaattact cagccaaaaa cgcattagca ttcacgatgc acaaattatt actactgaaa
     4381 atggtgtagt gttagacagc tttattgtaa gtgagcgtga tggtgatgat gatttaaccg
     4441 atgagagatg tatgcaaatt cagcaggcga tgatgaaaat gttaagctta actgaaacag
     4501 gcataaaatt taccaaaaaa ccggtgaaac atttgtcatt taagcgtaaa actcggctgc
     4561 gttttcttcc tccgtcatca aagcaacaaa ccgaatttga actttttacc ttggatagag
     4621 aagggttgtt ggcacaaata ggctatattt ttaaccggct ccgattaaat ttaattaatg
     4681 cgaaaattac gactattggt gaaagggtag aggatttctt tgtggtcagt aatgatcaag
     4741 gaaaagcttt atcggaacaa gaacagttag aactaaaagc cattctaatt accgaactag
     4801 atagtgaatg aaaacaaccg cttggagtga agactgcaag cggtaaattt ttcaacgttt
     4861 taggtaaatt aaatcacgag ttaagagagg ttgagaattc aagaaattag aaactaaata
     4921 taagtttcta tcgtttagat taataaatta agacgcaatt tttattaatt accatgatct
     4981 tcaaacgtta aatatgatga ataactaaag gtttgccttg gcattctaac acttcggcat
     5041 caagattaaa cactgttttt aaattttcag tggtgataat ctcttttggg gtgccgatca
     5101 tcttaattcc accatctttc attgcaataa tagtatctgc gtaagcagca gcaatgttga
     5161 tgtcgtgtac caccattata gtagttaagg cgagttcatc ggttaatttt cgtaataatt
     5221 tcattaattc ccgagcatgg aacatatcta aattattcag tggttcatct aataagatat
     5281 gatcggtttg ctgacagaag gtcattgcaa ttaatgcccg ctggcgttgc cctccggata
     5341 attcatttaa gaatcggtgg gagaaagtcg ataaatcaaa tcgtaccaga gcctcttcta
     5401 caatggcatt atcgtgcgaa gtgattctgc cttgatgatg agggtaacgc ccaaataaca
     5461 gcagatcttt gacggtaata cggctatgaa tcacattatc ttgggtcaag atagccagtt
     5521 gtcgagcgat agtttgagaa gctgtgttgg ctatattcag ctcatttaag tggatttcac
     5581 cctgttggat aggttgcaag cgtgcaatta aagagagcag ggtggatttg cccgcaccat
     5641 ttgctccgat taaagcggta ataccaccat ttggaatggt taaattgata ttattcagaa
     5701 tcgtggcatt cccgattttg tggtgaagat ttttaaccgt tatcattttc ttccttaatt
     5761 tatggttatt ttttccgttt taaaatgaga taaataaaga caataccgcc aataaattca
     5821 ataacgacac tcagaacccc ttgcattttc agcacttgct cgaagattgc ctgccctaaa
     5881 attaaggtga tggcagagat taaaaaagtc attggtattc gcacgctatg gcaaacagtc
     5941 gggctaattg cattaacaat ggcacaaaca agtagcccta gaaatagaat cgggccaaca
     6001 agtgcggttg aaacagacac caacaatcca caacagatta gtaattgacg tgaaaattga
     6061 tgatattcta acccaagccc aattgcctta tctttgccaa gtaacaaaat atctaattta
     6121 tgccgttgta accagaccca aatggcagag agaatagcga tacagcctcc aatccaaagt
     6181 aatgtggggg tagtcaggtt aaatgaggca aagaagagcc ttgagcaacg gcaaactctg
     6241 ttgggtcgac attcgttgca acaaattatt taggcttcta aataagacac caaagatgac
     6301 accgattaaa agcattcggg ttaaatcgga tcgatttcga ttcagtgaac taaatagtaa
     6361 tattgatgcc cctagcatta acaaggtttc aaagaaaaac ttatagcttg ggtctaactg
     6421 agtaaagcct aaaccgccaa ataaaaatac taacgaggtt tgcaatagca agtagagcga
     6481 atcgaacccc aaaatacttg gagttaaaat aggattatgt gtgagtgttt ggaatagcag
     6541 ggtcgaaata ccaatcgtat aagcaatagt acagagcaaa ataagctttt tgccacgcag
     6601 ttgcaatata aagtcccaat tacctttcgc attataggtc atataaaaca gaatacttgc
     6661 taataagatt aagcttaaaa cgataaagcg tgatctaacc acgagccttc tcctcagccc
     6721 gtttctcttt gagcaataaa tagaggaaaa tcactgtccc aataatccca aaaatagtag
     6781 aaatcggcac ttcataaggg gcattgatgg ctcgccctaa aatgtcacaa atcaggacta
     6841 aattcgcacc taacaccacg accgcaggca gatttttacg caatcggtca cctgctatgc
     6901 gagagacaat attagggacg accaagccga taaacggaat ctgtccaacc gtcaccacga
     6961 caatagcggt aatcatcgcc accacaatta aggcaagcca agtcatttgt ttgtagttaa
     7021 tgcctaagtt ggtactaata ttttcaccaa ggcctgcaat ggttaattga tctgccatca
     7081 cataaaccac aacagccaga atagcggtaa tccagagcag ttcataccga cctgccaaaa
     7141 taccggagaa gtcgccggaa aaccaaatcg aaagcacttg taggctgtca gtttcataag
     7201 caataaaagt gctgatagct tcaataacat tgccaaaaac gatcccgatt aatgggagca
     7261 ttaattgttg atgaggcggt aattgacgaa tgagcaacat aaaaagcccc attcccatta
     7321 atgcacttaa tgtggcaata gacattttta acagtaatgc tgatgttggg aaaagtaaac
     7381 tagcaagtaa aataccaatt gccgcacttt ggctagtgcc aatcatacta ggctcaataa
     7441 agcggttctt cagcacaatt tgtaatacca tacctgcaac ggctaaggtt gcaccgacta
     7501 atatcactgc gagcgttctt ggtaaacggc tgataaaaaa gatctgactt tgttcggaag
     7561 aatgaaaaat ttcactccaa tgaaaatctg ccacacccac actggcactg attggaatga
     7621 gcaatattaa aagaaataga tttaatctaa aaaaagagaa catagtgata aatagcaagc
     7681 ggtcatattc tctctctttt ttacaaatgc aggcacttgc aaaaatagga ggaaatctga
     7741 ccgcttgtaa ggttaattat tttttctcaa atgctgtttt aatgttagtt aggtcggttt
     7801 tcatctgctc ataaccaccc ggcgctaaat atgaggcagc acttagataa acgatattac
     7861 cgtttttcca agctttagtt tgacgaacta attcattatc caacacttgt tgggctgatt
     7921 gaccttcttg tccgatagcc gcaatacggt ctaacacaaa caaccaatcc ggattgagtt
     7981 tttggataaa ttcaaacgaa acaggctgac cgtgaccggt atttttaatg ctagaatctg
     8041 ccattggaat ccctaaatta tcgtgaatcc aacttaaacg ataacctgaa ccaaatgcag
     8101 aaattttgcc accattgact aaaataatca gtccgttacc tttacctttt actgctgctt
     8161 tggtttggtc taataaagta ttaatttctg cttttagttt ttcggtttcc gcttctttat
     8221 taaataattt gccgaaagaa tcaagacgct gtaatccgct ttcgattaat ttatcgccat
     8281 tatccgtcat gtcgatggtt ttcgcaattt ggctgacttc atcaaatttt tttgctgtgc
     8341 gtgtgccaac aatgatcaaa tccggattta aagaatttaa cgcttctaaa tccggctcaa
     8401 ataccgtacc gacattcacc gctttgtctg cactcggttt aagataagaa agcaccttaa
     8461 attcaggcat accgtcaatt tttacaccta aggcttgtaa agtatccaaa cttccggtgt
     8521 caaacacggc aattttagac ggggtttctt tgaaagtaac ctctccacgt gcagttggaa
     8581 tagtaacatc tttggcaaat gcagaagcag caaacacagc agttgcggtc aatgcaaaca
     8641 aggctttttt aatcattgga taactccatt tatattgaaa ataattctca aagattttaa
     8701 cgaaaattga ttttaagtaa agcggaaaat aacaagcggg cgaattttgc ctaaaatttg
     8761 caaatttcaa tttaattaaa attccgatac actatgtaca tcaatacgtc attatagcaa
     8821 gagaaaaata tggcagaata tagcggaaca acccaagaga agatgaaaga taagcaggtt
     8881 gagcaaatta atatctcacc acattcgatt gaggcagagc aagcggtgct tggtggcatt
     8941 atgctcagta atgatcactg ggataatgtt gctgagcgtg tacaaccgca cgatttttac
     9001 aactatgcgc atcgaattat ttttgaacaa atggcggagt tggtgcgcca caataaaccg
     9061 attgatatta ttacgctgga tcaagcctta aaagacaaag gggtgctgca agatgtagga
     9121 ggttttgcct atttagccga gctttctaaa aataccccga gtgcagcaaa tattttagcc
     9181 tatgcggata ttgtgcgaga tcgttccgat ttaagaagtg taatcagtgc cggcaatcaa
     9241 attgcggaaa tgggctacaa aacgaaaggg cgtaactcca aagaagtgtt agacgaggca
     9301 gagcgaattg tgtttgaaat tgcagaaaaa cgcaataacg ccaatgaagg tccacaacgt
     9361 attgacgata ttttgcttaa aacactcgct cgaatggata cgctatctaa aaatcgccat
     9421 aacggcggag ttactggtgt ttctaccggg tttgttgatc tcaataaaaa aaccgcaggg
     9481 ttacagcctt cggatttaat cattgtggca gcccgtcctt caatggggaa aactactttt
     9541 gcaatgaact tatgtgaaaa tgcctcatta gtggatattg aagataaaga tgatttagac
     9601 gaacagggta atccgaagaa aaaaccggca aagccagtgc taattttcag cctggagatg
     9661 ccggcagacc aaattatgat gcgtatgctt gcctcacttt ctcgggtcga tcaaaccaag
     9721 atccgaaccg gtcagatttc agatgatgaa gacactgcta aaatctccag cacaatggca
     9781 attttacaag aacgtaataa tatctatatt gatgatagct ccggtttaac accgaccgaa
     9841 ttacgttctc gagcgagacg gatttatcgt gaaaatggcg gattaagctt gattatggtg
     9901 gactatctcc aattaatgcg agcgccggga tttgcagata atcgtacttt agaaatcgca
     9961 gaaatttccc gttctttaaa ggcactagcg aaagaattag aagtgccagt agtcgctctt
    10021 tctcagctaa accggagttt ggaacaacgt gccgataaac gtccggtaaa ctcggatttg
    10081 cgtgagtcag gttctattga gcaagatgca gacttaatta tgtttattta tcgtgatgag
    10141 gtctataacg acaattccga tctgaaaggc attgcggaaa ttattatcgg aaaacaacgt
    10201 aacggcccga ttggtcgggt gcgtttaacg ttccaagggc agtattcccg ttttgataat
    10261 tacacaggag ggcattatga tgatgaatac taaaccaacc cagccaatca cactttgtgc
    10321 gatttatcgc agtaaggcaa aagaaggaat gtatttatat gtgcctaagc gtgaccaatt
    10381 tgagcaagtg ccggaaacat tacgccagtt atttggtaag cctgaatttg tgatgatgtt
    10441 taatttaacc ggtgaaaagc cattggtgcg tgctaaaaac gaagaagtgt tacaattact
    10501 tatagagcaa ggctactatt tgcaaatgcc acctccgccg gagaatttgc ataaagcctt
    10561 tatcgcacaa cagaaagggg aaaaataatg cgctgcccat tttgttccac tgaagaaact
    10621 aaagtgatcg attcacggct tgcagcaagc ggttatcaaa ttcgccgccg ccgtgaatgt
    10681 ataagctgta aagaacgttt tactaccttt gaatcggccg aattagttgt gccttatgtg
    10741 atcaaaaata atggtagccg agagccgttt gatgccgaaa aattaagaac agggttaaga
    10801 cgtgcattaa ataaacgccc tgtcagtgct gatgatgtcg aaaaagcaat tagccaaatc
    10861 attattcagc tgcaagcgat gggcgaacga gaagtgccga gtcgccatat cggtacattg
    10921 gcaatgaacg cacttaaaca attagacaaa gtagcatata tccgctttgc ctctatttat
    10981 ttaagcttta gtgatattga agagttcatt aaagaaattg aaaaattaaa agagtagttg
    11041 caaaaaaaca taaaaaaatg accgcttgtg agtttaaaat ccacaagcgg tcatttttct
    11101 ttaaaaatac tcaattagct tttacttgtt ccaacacaaa ccctacaaac gcccgcacaa
    11161 tgctagacgg ataacgatgg gcggcataaa tcatcgtcaa atcaaatttg gggttttctg
    11221 tctcacccaa gacttccacc aagccatttt ctgccaccaa tctatccacc gtgctgtcgg
    11281 caagcagagc cactgctttt tgccatatat tcaatggcat agctgtcatt gctggaaaaa
    11341 agatagggaa tttctaccgc ttgtctgcca gtgcctagcg tgatgacgct tgcttcattt
    11401 tttgcccaag cggcaatggg gaaatttttc aaatctttga cggtgctggg cgtgccaaag
    11461 cgtgccaaaa atttagggtg tgccacccat ttactgccga tttgccccac ttttttggcg
    11521 ataaactgtt cgccgtgtag ttgcccaatc cgaaacgcca catcaatgcc atctgccgac
    11581 aaatccaaaa gacggtcggt cagcgtgcaa tgcacttgta cttgtggata agctgcctga
    11641 aaatcagcta tccacgccaa aacaggctcg caggcagggc ttgccgacag gcgtaattta
    11701 ccctttaaat tgccttgctc ttcaaacaac acttctttgg cagtggcaag ctgttcaatg
    11761 gacaaatgca cctgttcata caggcgttgc cctgccattg tgggtttaac gcctgatttt
    11821 tggcggtcaa agagttgaat gttaagctct ttttccaaat cggcaatttg acggctaatg
    11881 gttgcaatcg gcacattgag tcgctcggag gctttggaga gactgccgtg ctggataacg
    11941 gcgacaaaga ggcggagggt gttgaggttc attgtttttc tccccaatgt tcaatttctt
    12001 gaataaaatg tttaatactg ccttggactt gttgattttt accatataga taataaacgc
    12061 ctgaaagttc ttgtaaaaat ttactttctt tataagcgtg tttttcaccc aacacagtcc
    12121 aaactaactt taacttatgc tcttttaaaa aatccaaaaa tttgtctttt ttaaccagta
    12181 agctattttg aaatttttca tttatctctg gattaaagca aaccaaatta ttttgtaaat
    12241 caacccaata accatcttta atcgcatttt tcattttcat tccgtgataa agcataggaa
    12301 ttggcgcata aaatgaaatg ccgtcattgc cataagtaga ttcccaagtg tgagaatcga
    12361 cactaggtat taccttaaat gaaggcgatt tattttccct atgtcgataa atttcttgcc
    12421 actcatttaa tgtattttcg gcaaaaaatt gatgaatatt cattccatag tgttcattac
    12481 cttctggcat ccatctttcc ataaaatctt gttgtgccaa ccaatttttt gcttttgaaa
    12541 attgagattc tttaactaaa taacttctaa tttgtaacca catttgccta tcataagttt
    12601 ctttttgccc aaattttgct aattcacgaa aatcatcgtg tctttctaga acaagccact
    12661 gttcatcatt aatcgttact tccaaaagat tactaacatc aggaaaatca tttattttta
    12721 cccaatcatc aattaattca tcattttgaa tggtaaaata gtgttttgtt ttacattgtt
    12781 tttgatttat gtattgaaaa aatacatctg ttttagttgg cggtacaatt ttaatttggg
    12841 ttttgggtag ataaaagttg tccaaattag taatatattc aagccctatt tcatcggcat
    12901 agcgattaga aaaagtagga aaattatcca tcacccttgc caagatttca tacaaagcca
    12961 accattgata tttcttgcca attcgctcaa ttttattagt atcatctctt cgccaatatc
    13021 ttgaacgagt ttctttatca aactcaaggt gcttcttgtc atcatagcca aattgctcaa
    13081 aaatcatttg gcaagcataa ttacttaata aatcaacatt gatgagattg ccgaatttat
    13141 aactctccca atttcggaat ttggcttcaa aagtatatct gccaaaatca ccatatccac
    13201 acataccacg accatattca gttgtcattg aacggataat gattctttgt ccatcagaat
    13261 gatatttttt atcaatttct tcattggttg gtaagttttg gggaaatgaa cttctataag
    13321 gtggcgtaat tctttctctg attatctcaa tatcatctga tgaatattca tctttttgca
    13381 aagagtattc aataatatgg cgagcataat cacgaaccaa aacattggga taaatttctt
    13441 ctgtttcagg ttgattaaat atttgattat ctatctctaa tgcaagtgct tttaagccag
    13501 atgaattttc agaataagca acagctccgt gaatggcaga taaaatacct tccataacat
    13561 aagggtcatt aacctctata aattccttga ataacgccaa tgcaatttcc aatctattcc
    13621 ataataaatg agccagtgca ttaatatagc catttctact tcgtttatcg gtagaagtaa
    13681 atagccaact aacagcaatt gcacccaata atagtgcttc gggttcaata ttttcttgac
    13741 cacttgattt ctgacaccaa gttagtaatc gttcaattgc tgggcattga tcagactcca
    13801 aagcaataaa agctgtccaa atctcatctc tatctgccaa agaaaaagaa taaagtttgt
    13861 tatgtaaata ttttatattt aatgggtggt taatttcggt agccagttga tataaaatat
    13921 taatccaagt tgcttgatta aaatatggac tatttttgaa aaattgatgt agtttttgca
    13981 tattgatttt ttcaggctgc ctccaaaaga gattttctac aataatctca aaccaagacc
    14041 attcctttga ataatcaatc acttcaaata cttcaaaatc aaatcgttct ggcaacaata
    14101 cacttaatgc ttcccatacg cccttatcat agccaactct actata
//
LOCUS       DANLXK010000065        13978 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.065, whole genome shotgun sequence.
ACCESSION   DANLXK010000065 DANLXK010000000
VERSION     DANLXK010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13978
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..474
                     /locus_tag="PXD88_001561"
     CDS             <1..474
                     /locus_tag="PXD88_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL6281129.1"
                     /translation="ANDPTACVKCWVFDDDLYIEREAGKVRLELDETAAYLANALPDL
                     SNYTVRADSARPESISYLKRHGLPYIQPVPKWKGSVEDGVEHIKSYRKVYIHPSCTEV
                     LKEFRLYSYKTDRLSGDVLPIIIDAHNHYIDAIRYALNPLIQARGEAKQCALKVY"
     gene            487..1890
                     /locus_tag="PXD88_001562"
     CDS             487..1890
                     /locus_tag="PXD88_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4055 domain-containing protein"
                     /protein_id="HDL6281130.1"
                     /translation="MPNSISADFAALKAKTKIIDDLLGGTQKMRQAGQTYLYKMKMEE
                     EDGYKNRLNRSTLYPALRETLSQMLGRVFFNPINVEDVHKQIEPLFDDIDLEGNNLDV
                     FASRWFYAALAYGVSYCLVDFVRVENARSLAEEKAQNARPYLVHIKPQQVLGFKTAKI
                     NGKTAFTQFRYKETVTEDDGEFASKQVNYIYVYEIGRVRKYKNDEGGLSLVADMQIKA
                     QNTPLAFVPIVPFITKPIDVWGMGEPPLMELAYLNIKHWQSQSDQDNILNIARVPLLA
                     IFSDTQIKSLEIGSSAISLPKDSTMQFIEHSGSSINAGLTSLKELEDQMKTAGAKLLT
                     KTALAMTDSQAKDEAGKEISQLRHYANKFEDALDLAFEYIGHWLGIGVDEVGTSQISG
                     NIDNDLDPNASMATIIQLRNAGVISNHSTFEEAKRRGLLSDSAKWEDEQARLQAEGLS
                     DDFTNPFNSNQSENAAS"
     gene            1838..3499
                     /locus_tag="PXD88_001563"
     CDS             1838..3499
                     /locus_tag="PXD88_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6281131.1"
                     /translation="MTLQIHSIRTKVKTPLAKRIAHALTDRKILQFRFDAHLRNQVWQ
                     RLTKTQKALLNRINAAGIDALPKRELDKLLKELKAEIAKNYQETTAYIQPELSGFFAV
                     EKQALTELYNDEIGYDFFNQVPSYQRKATQQATIIAGMPLESWFEKQGSELSFKFEST
                     IRQGLLEGRQTPEIAKATAELFGISRRHADTLVITAVAKVADDAHKALRDENLDLIKG
                     EMHLSTLDTRTSTVCQVRDGKMWDTDYKPIGHSLPYQRPPLHPRCRSILQLVMKDWKE
                     LGFDDVKEMPKSTRASADGQVSEKTNYEEWLSSKTPEEQDKALGKGKADLWRRGVITF
                     SDMLDQSARPLTLKELYSLKNSSSVDKMDSVELVRKKAVAVEPMITRDVVSIITASGG
                     EPAGLDFRLKSLSSLQRKIDTEIMAGVSKEQAIASIRDVIRYTAILDEQRFVEQYQKM
                     QKDLEKQGYSTIIVKNTWKSNNAYKGINTFVSTFIEKNNIIFELQYHTKQSFELKNGK
                     LHELYEKFRDLNIPLAKKSEILLEMQKLSANLKEPKNIDLIKEKK"
     gene            3499..3717
                     /locus_tag="PXD88_001564"
     CDS             3499..3717
                     /locus_tag="PXD88_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281132.1"
                     /translation="MYQYYLAQVGNEQQKLIRGMPDNLLSFSVYEPEQEDWDNKFGPF
                     WADKILISGFDAYEEISEKEAIRFIKVH"
     gene            3718..4131
                     /locus_tag="PXD88_001565"
     CDS             3718..4131
                     /locus_tag="PXD88_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDL6281133.1"
                     /translation="MCQAEQFARQLHYGQTDKAGKPYIEHLAFVAENISTKNEETEAV
                     AWLHDSVEDTQCSINDIRHIFGDVIADAVEAITKKQGESYFCYLDRVKSNPIAKVVKL
                     ADLTHNLCLERLPKITEKDLKRAEKYKSALEYLQA"
     gene            4249..4983
                     /locus_tag="PXD88_001566"
     CDS             4249..4983
                     /locus_tag="PXD88_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281134.1"
                     /translation="MKLKLDENGHVVVENGMPVYIHDDGKEIPFDALKATQKITQLNA
                     EAKQHREAKEKAEADLKAFSGIDDPKAALEALKTVANLDAKKLIDAGDAEKVKAEIIK
                     GYDEKLAVATAQAEKLQQQLHAELIGGSFARSKYAQEHLNIPSDVVQAFFGKHFSISD
                     DGKVVAKFADGGEIFSRTRPGEKADFEEALEALVSAYPNKDAILKPSGSSGAGAGGGS
                     RSSSMPKTLSDCKTDEERIAYLQANS"
     gene            5049..5996
                     /locus_tag="PXD88_001567"
     CDS             5049..5996
                     /locus_tag="PXD88_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005643804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281135.1"
                     /translation="MAFDLQVFNKQTQLALTETVDQAIEKFNAASGGAIILQNKPAEG
                     DFDIRASFKGIAGLVRRRNVYGTGTVDAKRLEQLLDVAVKVAAGTAPIEYQPSQYKWI
                     LLNPELAAIEIGTQLAKARVADMLNTAIAGTVAAISGNTAMTLDEKTAAPTFRILNKG
                     AAKMGDRAGSLKAWVLHSTTLHGLYDNALTNAENLFKYENVNVIRDPFGRVFVVTDSP
                     ALMASDGTFNTLGLVENAVVVSGNNDFDSVLVPKTGGENLSAVYQAEWTYNLGILGYK
                     WDMTAGGKSPNDTALGTPTNWDKSVTSNKDTAGVLVKTK"
     gene            6056..6406
                     /locus_tag="PXD88_001568"
     CDS             6056..6406
                     /locus_tag="PXD88_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281136.1"
                     /translation="MKRILYFTTDFSAKNIAFAKAHGVLMRNLNAYHPSDTLENADAV
                     CGNVPQAYQHLPLFELPESNQKSGQDLKTLKTEEIKEKLTELGIAFEANAKKETLLTL
                     LTQAVGRDGTNDAK"
     gene            6396..6833
                     /locus_tag="PXD88_001569"
     CDS             6396..6833
                     /locus_tag="PXD88_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281137.1"
                     /translation="MLNSYMTVEQANAYHDIRMSREAWNALSDQEKQQRLVSASDFLD
                     FNYRFSGEKADLTQEREFPRKGFEAIGIPKAVQFAVCELALQDNLTANQEAQMSSVRV
                     GPVSVNYDNSSPQNSVNRFEYVRQLLSTWLDRSSFGTVKLERS"
     gene            6833..7204
                     /locus_tag="PXD88_001570"
     CDS             6833..7204
                     /locus_tag="PXD88_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281138.1"
                     /translation="MADFYGNLGKISHSLIKQFGQPCSVTINEQGRYNPATGERKKGS
                     STVHAGYCLFDNLAFDFRNQQSVSVQQGDVMIYLTADCKPVLNAVIEANGEKWSVINV
                     QPIRPAATTMIYQVQGRKADG"
     gene            7197..7610
                     /locus_tag="PXD88_001571"
     CDS             7197..7610
                     /locus_tag="PXD88_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL6281139.1"
                     /translation="MGSFHAQIARFVEQTQQKADRALRVIALQTLSGVQKKSPVDTGQ
                     LRRSWTVALNGFPSSYNGSQTVLNSAKFGDMIVIATNKPYAPMLEYGLYPNPPKKPTG
                     KTKNGYSIQAPNGMVRITVQEMQAFIRNNPQLGVS"
     gene            7610..8002
                     /locus_tag="PXD88_001572"
     CDS             7610..8002
                     /locus_tag="PXD88_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281140.1"
                     /translation="MRPIIRSVLEQHLAELNPFNTVWEGIIDSPKLPYQTVSMTTSTN
                     ETATIGNTPKAKQSGFLQVTLYYPLDQGTKAIEERADEIFRHFFGQVWIEENVQILVQ
                     QPPLVASLYRLDNSIALPITIYFTAYEL"
     gene            8012..9034
                     /locus_tag="PXD88_001573"
     CDS             8012..9034
                     /locus_tag="PXD88_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281141.1"
                     /translation="MSILGNSQGTKRTVVFAKESSFGTKAAPTGAKIMPRVETSLNTN
                     FESYQSEEIRDDLQRSASVIGFEKVEGDIKGELAAGQWAAFFAAALRGSFTAQAKKPI
                     ITKTTDGTGEKNGKILIVPKTSHTSDSFTLEDVFKDINVSRQYLGCRVSKLSLDVQPN
                     GIASITVSFLGQRGEESTTAYFTNPTDLTQSGKLAGVKGSLQVNKRPVGLVTAFKLDI
                     DLGASSEPVLGAKYAPDVFIGTVAVSGSFTMYFQDKTMIDAVRNGTDLSLALRMDAEE
                     RTNTDYLTIILPGVKVTSNELDDGAKNIMQTLNFDAFPAVWDSASQIDNVLKVATTMI
                     VQDSLA"
     gene            9124..9525
                     /locus_tag="PXD88_001574"
     CDS             9124..9525
                     /locus_tag="PXD88_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281142.1"
                     /translation="MNLNALSKEKQLAEHRFELVHPVSGEPLGVFMSVVSAKSDKAQR
                     FAEKQLRQEQMRELENAKSRKPKFKGLGDMIAESRAMAIDRLTGWENVEWNEKPLEFS
                     DQNAELLLTECDWIVEQIFEHSNDLGKFLKS"
     gene            9540..9866
                     /locus_tag="PXD88_001575"
     CDS             9540..9866
                     /locus_tag="PXD88_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281143.1"
                     /translation="MYAEKTFKLDKKLKGSESTLREHLQAIEMQTGITPEELHNPEPS
                     PAVAYLLGWFFELAMSRQSGMSLNPISYTEIDAWSRLFARHLEQWEISVIKQLDMIYL
                     NVQQTE"
     gene            9868..10191
                     /locus_tag="PXD88_001576"
     CDS             9868..10191
                     /locus_tag="PXD88_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281144.1"
                     /translation="MDTFNFQPNWGLNVQRKPEVMKIAFGDGYEQVAPKGLNHNLRTY
                     SAVFTGTEARIKQIEAFFERQGGYKAFLWTPYGGKEGKFRCEEWEVSISSGKWTLSAT
                     IREVL"
     gene            10278..10970
                     /locus_tag="PXD88_001577"
     CDS             10278..10970
                     /locus_tag="PXD88_001577"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281145.1"
                     /translation="MKKIFVSALLLTCSLSALGNSSYELIIDSMQDLEKHKPEILSIP
                     EADRNTFIRYMMRKELRIKLNQGRLADGLTVREAIQNQQAFEKDRNSKMQQEKQKKET
                     EKAEKEKAVTDFNQKFELSITGARKAKNALNQDILLVSLSLKNNSDKPIIAVQPDIQF
                     VLGEDKQTISSMRPKKFENGIPPNGSEIFEFGFDLDDMFALKAEKNIEKLRAVFQTAE
                     VLFADGTTEKLQ"
     gene            11034..>13978
                     /locus_tag="PXD88_001578"
     CDS             11034..>13978
                     /locus_tag="PXD88_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015691083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL6281146.1"
                     /translation="MADLATLAIKIETEGASRASADLSKVEQSAKNTEKAADNLTRAM
                     GNLKRILAIAGLAGGLSAYLDMAERMQSLNAQLKFVTNSQYEFNSAQKELFAIAQNTR
                     ASLESTTQLYIKSSQALKDYGYAQKDILTFTETINKAMAVGGVKPQEQASALLQLSQA
                     LGSGKLQGDEFRSISEAAPIILDTLAEYMGKSRDEVRKLASEGKLTADLLFNAFNGSS
                     AKITEKFNQMPLTFGGAMQQLQNATLKFIGDLDSANGLSGMLAQAISFLAQNFDVLGK
                     ALIYATGAYIAFNAVAFAQNFAKATGGVGLLSSAFGYLTTMIRGATVAMMANPIELLT
                     TAIIGAAFVFDAFISDIEVGAATFDATWGDVATAVWDDFKDLTSDAADWLVTQWDKAT
                     ASAASSFSSLGVDIGSVWETVQSITKTLINSIIGLFVGAYQAIVLAWNNFPATMENLG
                     VMAVNALVDLVQKGINSIIQLIKLPIELLNRASSTFGGGNLIDTSGWKASLDDFKLKA
                     SREAEVVGQSISQAFADSITTDYIGNAVNSVSDYIDGAAVRGRLKRQLDETASDDQGT
                     QSPAKKTLAGNNNSASDWKNYLNELERANADGLARIALEQDRSMREMLEKAKKAGASH
                     AEIEKAKMLITERYAKERMEIAEKYVPSLKFEEELKDQIKEIDELQKLNLITTEQAGL
                     AKEALAGKYQPVVEIQQQYINQLREIEALKQAGVLSKPQAEVAAEKAKWDAGTQKAKI
                     AGKNAVSPYEKWKSEFDPMQAIQNEQASKLAEVQSMYDQHLIQYEDFINAKAQIDAKA
                     TADTHQLFMNSISGFGSAIDTMLGVMKNAGQEQSGIYRTMFAMSKAFAIAESILNLNR
                     AITQAMSDQTAITPAQKFANMAAIASAGASLISNIQSVSLGGMAHSGIDNVPKEGTWL
                     LDKGERVVDSRTNQDLKTFLSNANRGGASGQRSAINVKIINNGQPVEAKVSSEETVDG
                     NIQMTVELL"
BASE COUNT         4435 a         2685 c         3259 g         3599 t
ORIGIN      
        1 gccaatgacc caacagcctg tgtgaaatgt tgggtgttcg atgatgactt atatatcgag
       61 cgtgaagcag ggaaagtaag actagagctc gatgagaccg ctgcttattt agcaaatgct
      121 ttgcctgatt tgagtaatta tactgttaga gcagattctg ctcgcccaga atccatcagt
      181 tatttaaaac gacatggatt gccttatatt caacctgttc caaagtggaa aggctcagtc
      241 gaagatgggg ttgagcatat aaaatcttat cgtaaagtat atattcatcc aagttgtaca
      301 gaggtattga aagaatttcg cctttatagt tacaaaacgg acagattaag tggtgatgta
      361 ctgcctatca ttattgacgc tcataaccac tatattgatg ccattcgtta tgccttaaat
      421 cctcttattc aggcaagagg cgaggcgaag caatgtgcat taaaggttta ttaaaatgag
      481 gtaacaatgc ctaactccat ctcagccgat tttgcggcat taaaagcaaa aacaaaaatc
      541 atcgatgatt tactcggtgg cacacaaaaa atgcgacaag cgggtcaaac ctacctctat
      601 aaaatgaaaa tggaagagga agatggatat aaaaaccgat taaatcgttc tacgctttat
      661 ccggcattga gggaaacgct ttcgcagatg ttggggagag tgttttttaa tccgatcaac
      721 gtagaggatg tgcataaaca aatcgaacca ttgtttgatg atattgattt agagggtaac
      781 aatcttgatg tattcgcttc tcgttggttt tatgctgcat tggcttatgg cgtatcttat
      841 tgcttggtgg attttgtgag ggtagagaat gcccgcagtc ttgcagaaga aaaagctcaa
      901 aatgcacgtc cgtatttggt gcatattaag ccgcaacaag tgctgggctt taaaacagcc
      961 aaaatcaacg gtaaaactgc ttttacccaa tttcgttata aagagacagt tacagaagat
     1021 gatggcgagt ttgcttctaa acaggtgaac tacatttatg tttatgaaat cggacgtgtc
     1081 cgaaaatata agaacgatga gggtggctta tcactggttg ctgatatgca aatcaaagct
     1141 caaaatacac cgcttgcatt tgtgcctatt gttccattta tcactaaacc gattgatgtt
     1201 tggggaatgg gtgagccgcc tttaatggag ctggcttatt taaatattaa gcactggcaa
     1261 agtcagtcag atcaagacaa tattttgaat attgctcgtg taccgctatt agctattttc
     1321 tctgatactc aaataaaatc ccttgaaatc ggctcaagtg caatatctct gccgaaagac
     1381 agtacaatgc agtttattga gcattcaggt tcgtctatta atgccggttt aaccagtctg
     1441 aaagaactag aagaccaaat gaaaactgcc ggtgcgaaac tgctaactaa aacagcatta
     1501 gcaatgacgg atagtcaggc taaagatgaa gcaggtaaag agatctcaca gcttagacat
     1561 tatgctaaca aatttgaaga tgctctcgat ttggcttttg agtacattgg gcattggcta
     1621 ggtatcggcg ttgatgaagt tgggacttcg caaatttcag gcaatatcga caatgattta
     1681 gatccaaatg cgtcaatggc aaccattatt cagctacgca atgccggtgt catttcaaat
     1741 cactctacgt ttgaagaagc taaaagacga ggtttattgt cagatagtgc aaaatgggaa
     1801 gacgaacaag caaggttaca agcggaaggt ttaagcgatg actttacaaa tccattcaat
     1861 tcgaaccaaa gtgaaaacgc cgctagctaa acggatcgct cacgcattaa cagatcgtaa
     1921 aatattgcag ttccgttttg atgctcattt acgaaatcaa gtttggcaac gactcacaaa
     1981 aacgcaaaag gcattattaa accgaattaa tgcagccggg atagatgcct taccgaaaag
     2041 agagttggat aaactgctca aagaactcaa agcagaaatt gcaaaaaatt accaagaaac
     2101 gaccgcttac attcagcctg aattaagcgg tttttttgcg gttgaaaaac aggcactgac
     2161 tgagctttac aatgatgaaa tcggctatga ttttttcaat caagtgccgt catatcaacg
     2221 taaagctacg caacaagcga ctattattgc cggaatgccg cttgaaagtt ggtttgaaaa
     2281 gcaaggatca gagctttcgt ttaaatttga aagcaccatt cggcaaggct tgttagaggg
     2341 taggcaaacg cctgagattg ccaaagctac ggctgaatta tttggtatat ccagacggca
     2401 cgctgataca cttgtcatta ctgctgtggc aaaagtggcg gacgatgctc acaaggcatt
     2461 gcgagatgaa aatcttgatt taattaaggg tgagatgcac ttatcaacgc tcgatacccg
     2521 caccagtact gtttgtcaag tgcgagacgg taagatgtgg gacactgatt acaagcctat
     2581 cggacacagt ttgccgtatc aacgcccacc acttcaccct cgctgtcgtt cgattctgca
     2641 actggtgatg aaagactgga aagagttagg ctttgatgat gtgaaagaaa tgccgaaaag
     2701 cactagggcg agtgcagacg ggcaagtgtc ggagaagaca aactatgaag agtggctcag
     2761 tagcaaaaca ccggaagagc aagataaagc gctaggcaaa ggcaaggcgg atttgtggcg
     2821 gcggggagtg ataacgttta gcgatatgtt agatcaaagt gctagaccat tgacactaaa
     2881 agagctatat tcattaaaaa atagttcttc ggtagataaa atggatagtg tggaacttgt
     2941 ccgtaaaaag gctgttgcag ttgagcctat gattactcgt gatgtagtat caattattac
     3001 agcatctggg ggcgagcctg ccggcttaga ttttcgcttg aaatcactat catctttgca
     3061 gcgaaaaatt gatacggaaa taatggccgg agtgtcaaaa gagcaagcga tagcaagtat
     3121 tcgagatgtt attcgctaca ctgcaatctt agatgaacag cgttttgttg agcaatacca
     3181 aaaaatgcaa aaagacttgg agaaacaagg ttattctacg atcattgtta aaaacacttg
     3241 gaaatcaaat aatgcttata agggcattaa tacgtttgtg agcactttta ttgaaaagaa
     3301 taatataatt tttgaattgc aatatcatac aaaacaaagt tttgagttga aaaacggtaa
     3361 attgcacgag ctctatgaaa aattcagaga tctgaatata cctcttgcaa aaaaatcaga
     3421 aattttactt gaaatgcaga agttaagtgc taatctaaaa gagccaaaga acattgattt
     3481 aatcaaggag aaaaaataat gtatcagtat tatttagctc aagttggcaa tgaacagcaa
     3541 aaacttattc gtggtatgcc tgacaatcta cttagtttct cggtttatga gcctgaacaa
     3601 gaagattggg ataataagtt cggcccattt tgggcagaca agatcttgat aagcggattt
     3661 gacgcttacg aggaaatttc agaaaaggaa gcaatccgat ttatcaaggt acattaaatg
     3721 tgtcaagctg aacaattcgc tcgccaactg cattatggac aaacagataa agctggaaag
     3781 ccatacattg agcatcttgc ttttgttgca gaaaacatta gcacaaaaaa tgaagagaca
     3841 gaagcagtag cttggttgca cgacagtgta gaagatactc agtgttcaat taatgatatt
     3901 cgtcatatat ttggcgatgt tattgctgat gcagttgagg ctattactaa aaagcaaggc
     3961 gaaagttatt tttgctactt ggatagagta aaatcaaatc ctattgctaa ggtggttaag
     4021 ttagctgatt tgactcataa tctttgcctt gagcgattgc ccaagatcac tgaaaaggat
     4081 cttaaacgag cagaaaaata caaatcagca ttggaatatc tacaagccta gcctaaaacg
     4141 ctaggctttt ttatcgcaat tttttacccc aaactgaccg tttgtgagcc atcacaggcg
     4201 gttttttatt atcgggcgga agcccaccag caatgagagg aagctcaaat gaaattaaaa
     4261 ttagacgaaa acggacatgt agtagttgaa aatggtatgc ctgtgtatat tcacgatgac
     4321 ggaaaggaaa ttccgttcga tgcactaaag gcgacacaga aaatcacaca actgaacgct
     4381 gaggcaaagc aacatcgaga agctaaagag aaagcggaag ccgacttaaa agcattctca
     4441 gggattgacg atccgaaagc tgcactcgag gcattaaaga cggttgccaa tttagatgct
     4501 aaaaagctga ttgatgccgg tgatgcggaa aaagtcaaag cggaaatcat caaaggttac
     4561 gatgagaaat tagctgtggc aaccgctcaa gccgaaaaac tgcaacagca gttacacgct
     4621 gaattaatcg gtggttcgtt tgctcggtct aaatacgctc aagaacactt gaatattccg
     4681 tctgatgtcg tacaggcatt cttcggtaag cattttagta tttcggatga cggcaaagtg
     4741 gtagctaaat ttgctgacgg gggcgaaatc tttagtcgca cccgcccggg cgaaaaagca
     4801 gattttgaag aggcattaga agctttagta agtgcttatc caaataaaga cgctatttta
     4861 aaaccaagtg gttcaagtgg ggcaggagca ggtggcggat cacgcagttc atctatgccg
     4921 aaaacattat cggactgcaa aacagatgaa gagcgtatcg cttatcttca agcaaattcg
     4981 taaggtgcaa gaggttgcac cttttttatt ttcggtgcaa tcgcaccact ttttagagga
     5041 aaatcaaaat ggcatttgac ctacaggttt ttaacaaaca aacgcaatta gccttgaccg
     5101 aaactgtcga tcaggctatt gaaaaattca atgcagcatc aggcggtgca atcattttac
     5161 agaacaagcc agctgaaggt gattttgata tccgtgctag ctttaaaggt attgccggtt
     5221 tagttcgccg ccgtaatgtg tacggtacag gtacggtaga tgcaaaacgt ttagagcaat
     5281 tactggacgt agcagttaaa gtggcggcag gtacagcacc gattgaatac cagccgagtc
     5341 aatataaatg gattttatta aatcctgaat tggcggcgat tgaaatcggc acacaacttg
     5401 ccaaagcccg tgttgctgat atgctcaata cggctattgc cggcacggtt gctgcaatta
     5461 gtggcaatac agcaatgaca cttgatgaaa agaccgccgc tccgacattc cgcattttaa
     5521 acaaaggtgc agcgaaaatg ggtgatcgtg ccggttcgct taaagcgtgg gtgttgcact
     5581 ccacaacctt acacggctta tacgataatg ccttaaccaa tgcggaaaac ttattcaagt
     5641 acgaaaacgt gaacgtaatt cgtgacccgt ttgggcgtgt atttgtcgtc acagacagcc
     5701 cggctttaat ggcttcagac ggtacattta acaccttagg cttggttgaa aatgcggtgg
     5761 tagtttccgg caacaatgac tttgacagcg tgttagtgcc gaaaaccggc ggagaaaacc
     5821 tttcagcagt ttaccaagct gaatggacct ataacttagg aatcctaggt tataaatggg
     5881 atatgaccgc tggtggtaaa tcaccgaacg ataccgccct aggcacaccg acgaactggg
     5941 ataaatcggt tacctccaac aaagacaccg ccggtgtatt ggtaaaaacg aagtaatttt
     6001 taaccgcttg tagataaggt ttacaagcgg ttgttttttt atctggagtt tgcaaatgaa
     6061 acgaatactt tattttacaa cggatttttc ggcaaaaaac attgcctttg ccaaagctca
     6121 cggtgtatta atgcggaatc tgaacgctta ccacccatca gacaccttag aaaatgcaga
     6181 tgcagtgtgc ggtaacgtac ctcaagctta tcaacattta ccgttgtttg aattgcctga
     6241 gtctaaccaa aaatcaggtc aagatttgaa aaccttaaaa accgaagaaa ttaaggaaaa
     6301 actgactgaa ttaggtattg cttttgaggc gaatgccaaa aaagaaacat tactaacctt
     6361 actcactcag gcggtgggac gtgacggaac aaacgatgct aaatagttat atgacggttg
     6421 agcaagccaa cgcctatcac gacatcagaa tgagccgtga ggcgtggaat gcgttaagcg
     6481 atcaagaaaa acagcaacga ttggtgtcag cgtctgattt tctggatttc aattatcgtt
     6541 tttcaggcga aaaagcagat cttactcaag agcgtgaatt tccacgcaag ggttttgaag
     6601 ctatcggtat tcctaaagcc gtgcaatttg cggtatgtga gttggcattg caagataact
     6661 tgaccgcaaa tcaagaagct caaatgagta gcgtaagagt tggcccggtt tcagttaatt
     6721 atgataacag ttcaccgcaa aacagcgtga atcggtttga gtatgtgagg cagttgcttt
     6781 ccacttggtt agatcgatct tctttcggca cggttaagtt ggagcgtagt tgatggcgga
     6841 tttttacggc aatttaggga aaatctccca ttctttgatt aagcaattcg ggcagccttg
     6901 tagtgtaaca attaacgaac aaggcagata caaccctgca accggtgagc ggaaaaaagg
     6961 tagctcaacg gttcacgcag gctattgtct gtttgataat ttggcgtttg atttccgcaa
     7021 tcagcaatct gtcagcgttc aacaaggcga tgtgatgatt tatctcactg ccgattgcaa
     7081 accggtatta aatgctgtga ttgaagcaaa cggcgaaaaa tggtcggtca tcaacgtcca
     7141 gcctatacgc ccagcagcta ccacgatgat ttatcaagta caagggagaa aagccgatgg
     7201 gtagttttca cgctcaaatc gcccgttttg tggaacaaac gcaacaaaaa gcggataggg
     7261 cgttaagggt aattgccctg caaaccttaa gtggggtgca gaagaaatcg cctgtcgata
     7321 ccggacaact tcggcgtagc tggacggtgg cattaaatgg tttcccgagc agttataacg
     7381 gcagtcaaac cgtgctgaat agtgctaaat tcggcgatat gattgtgatt gctaccaata
     7441 aaccttatgc accaatgctc gaatatgggc tttacccgaa cccaccaaaa aaaccgaccg
     7501 gcaagaccaa aaacggttat tcaatacaag cacctaatgg aatggtgcga attaccgtgc
     7561 aggaaatgca agcctttatc cgcaataatc cacaattagg agtaagctga tgcgaccgat
     7621 tatccgctcg gtattagagc aacatcttgc cgaactcaat ccgtttaata cggtttggga
     7681 gggcatcatc gacagcccga aactgccgta tcaaaccgta tcaatgacga cttcaaccaa
     7741 cgaaaccgcc acgattggta atacgccgaa agccaaacag agcggttttt tgcaggtcac
     7801 gctttactat ccgctagatc aggggacaaa ggcgattgag gaacgagccg atgagatctt
     7861 ccgccacttt ttcgggcagg tctggattga ggaaaatgtg caaattctgg tgcaacagcc
     7921 accgcttgta gcctcacttt atcgactgga taacagcatt gccttaccca tcaccatcta
     7981 ttttaccgct tatgaactat aggagaaccc aatgtctatt ctaggcaatt cacaaggcac
     8041 aaaacgtacg gtcgtttttg ccaaagagag ttctttcggc acgaaagctg ctccgacagg
     8101 cgcaaaaatt atgcctcgtg ttgaaacctc actcaatacc aattttgaaa gttatcaatc
     8161 ggaagagatc agagatgatt tacaacgctc cgcctctgtg atcggctttg aaaaggtcga
     8221 aggcgatatt aaaggcgaac tagccgccgg acaatgggcg gcattttttg cggctgcatt
     8281 acgtggttca tttaccgctc aggcgaaaaa gccgattatt accaaaacca cagacggcac
     8341 cggcgagaaa aacggtaaaa ttttgattgt gccgaaaacc agccacacct ccgacagttt
     8401 cacgctggaa gatgtcttca aagacatcaa cgtcagccgc cagtatttgg gatgtcgtgt
     8461 atcgaaactc agccttgatg tgcaaccaaa cggtattgcc tcgattacag tctcattttt
     8521 agggcaacga ggcgaagaaa gtacaacagc ctattttacc aatcccaccg atttaaccca
     8581 atccggcaag ctggcagggg taaaaggctc attgcaggtc aataaacgcc cagtcgggtt
     8641 agtgacggcc tttaaactgg acattgattt aggggcaagc agtgagccgg tattaggggc
     8701 aaaatacgcc cctgatgtct ttatcggtac agtggcagtg agcggatcgt ttacgatgta
     8761 cttccaagac aagacgatga ttgatgcggt gcgtaacggc acagatttat cccttgcttt
     8821 gcggatggat gccgaagagc gtaccaatac cgactattta accattatct taccgggtgt
     8881 caaagtgacc tcaaacgagt tggacgatgg ggcgaaaaac attatgcaga cactcaattt
     8941 tgacgcattc cctgcggtat gggattcagc aagccaaatc gacaacgtgc taaaagtcgc
     9001 caccacaatg attgtgcaag acagcctcgc ttaatcgaaa ttttgcaaaa aaataaccgt
     9061 atctaaccgc ttgccctcaa acaagcggtc ttttttatcc ccaatttaca aaaggaaacc
     9121 caaatgaatt taaacgcatt aagtaaagaa aaacagttag ccgaacaccg ttttgagctg
     9181 gttcaccctg ttagtggcga accgctcggc gtgtttatga gcgtcgtgag tgctaagagt
     9241 gataaggctc aacgctttgc cgaaaaacaa ttacgccaag aacagatgag agagctggaa
     9301 aatgccaaat cccgcaagcc gaaattcaaa ggcttaggcg atatgattgc cgaaagtcgt
     9361 gcaatggcga ttgaccgctt aaccggctgg gagaatgtcg aatggaacga aaaaccgttg
     9421 gagttttccg accagaatgc ggagctactt ttaaccgaat gtgattggat tgtggagcaa
     9481 atctttgagc attcgaacga tctgggaaag ttcttgaaga gctaattgat gatttacagg
     9541 tgtatgcaga gaaaacgttt aagttggata aaaaacttaa aggcagcgaa agtaccttgc
     9601 gagagcattt gcaggcaatc gaaatgcaaa ctggcattac accagaagaa ttgcataacc
     9661 ctgaacccag tccagcggtg gcctatctgc tgggctggtt cttcgagttg gcaatgagcc
     9721 gacaatcggg tatgagctta aacccaatta gctacactga aattgatgcg tggagcaggc
     9781 tttttgctcg tcatctcgaa caatgggaga tcagcgtaat taagcagctt gatatgattt
     9841 acttgaacgt acaacaaacg gagtagtatg gatactttca actttcagcc caattggggg
     9901 cttaacgtac agagaaagcc agaagtgatg aaaatcgcct ttggtgacgg ttacgaacaa
     9961 gtcgccccta aagggttaaa ccataatctc cgcacttatt ccgctgtttt caccggcaca
    10021 gaagcacgga ttaaacagat tgaggcattt tttgaacgac aaggcggcta taaggctttt
    10081 ctttggacac cttacggcgg gaaagagggg aaattccgct gtgaagagtg ggaggtaagc
    10141 ataagcagcg ggaaatggac gctgtcggcg acgataagag aagtgttgta gttttttctg
    10201 attttgtgaa ctggttcaca ctctgtgggt tggatatagg ttagaattta agtctaattt
    10261 gcttaacgga gtcttttatg aaaaaaattt ttgtttcagc cttattgctc acttgctcgt
    10321 tatctgcact tggaaattcc tcgtatgagt tgattattga ctcaatgcaa gatcttgaaa
    10381 agcataaacc cgaaattcta tctataccag aagcggatag aaatactttt attcgttata
    10441 tgatgcgaaa agaactgcgg ataaagttaa atcaaggcag attagcggat ggtctaactg
    10501 tgagagaagc tattcaaaat caacaggcat ttgaaaaaga tagaaatagc aaaatgcagc
    10561 aggagaagca aaaaaaagaa acagagaaag cagaaaaaga aaaagctgtt acggatttta
    10621 accaaaaatt tgagctatcc attacagggg cgagaaaggc aaaaaatgca ctaaatcaag
    10681 atattttgct tgtttcatta agtctaaaaa ataactcaga taagccaatt atcgctgtac
    10741 aaccggatat tcaatttgta ctgggtgaag ataaacaaac tatttcatcc atgcgtccaa
    10801 aaaaatttga aaacggcatt ccgcctaatg gctcagagat ttttgagttt gggtttgatt
    10861 tagatgatat gtttgctttg aaagcagaaa aaaatataga gaaattgagg gcagtcttcc
    10921 aaacagcaga agttcttttt gctgatggaa caactgaaaa acttcaatag taattggtaa
    10981 atcttcattg gccgcttgta gaaatacagg cggttttttt attggagcaa gctatggcag
    11041 atttagcaac actggcgatt aaaatcgaaa cagaaggcgc aagccgagca agtgcagatc
    11101 taagtaaggt cgagcaatct gcaaagaaca cagagaaagc cgcagataat ctgacgcgcg
    11161 caatgggaaa tttgaagcgg attttagcga ttgcagggct ggctggtggg ttatccgctt
    11221 acctagatat ggctgaaaga atgcagtcgt taaacgcaca gcttaaattt gttactaact
    11281 ctcaatacga attcaatagc gcacaaaaag agctttttgc gattgcgcag aatacgcgcg
    11341 ctagtttgga aagcaccacg caactttata ttaaatcttc tcaggcactg aaagattacg
    11401 gctacgcgca aaaggatatt ctcacattta ccgaaaccat taacaaagca atggcagttg
    11461 gcggggttaa gccacaagag caagctagtg ctttactcca attatcacag gcattaggtt
    11521 cagggaaact gcaaggagat gaattccgtt caatttcaga agctgcaccg attattttag
    11581 atacgcttgc cgagtatatg ggtaaaagtc gcgatgaagt aagaaaactc gcatccgagg
    11641 gtaagctcac cgcagactta ctgttcaatg cgtttaacgg ttcaagcgct aaaattaccg
    11701 aaaaatttaa tcaaatgccg ctaacatttg gcggtgcaat gcagcagttg cagaatgcca
    11761 cattgaaatt tatcggtgac ctagatagtg caaatggctt gagtggaatg ttagctcaag
    11821 ccattagttt tttagcacag aattttgatg tgttaggcaa ggctttgatt tatgcaaccg
    11881 gtgcttatat tgcgtttaat gcagttgcct ttgctcagaa ttttgcaaaa gcaaccggtg
    11941 gtgtcggttt attaagtagt gcatttggtt atttgactac gatgatccga ggtgcaactg
    12001 ttgcaatgat ggctaatcct atcgagcttt taacaactgc aattattggg gctgcttttg
    12061 tatttgatgc ttttatcagt gatatagagg taggtgcagc aacctttgat gcgacttggg
    12121 gagatgttgc gacagctgtg tgggatgatt ttaaagattt aacttcagat gcggcagatt
    12181 ggttagtcac tcaatgggat aaagcaaccg ccagtgcagc gagttcgttc agttccttag
    12241 gtgttgatat tggctcagta tgggagacgg tgcaatccat tacgaaaaca ttgatcaata
    12301 gtattattgg tctgtttgtt ggagcttatc aagccatcgt gcttgcttgg aataattttc
    12361 ctgccacaat ggaaaacttg ggtgtgatgg cggtaaatgc tcttgtcgat ttggttcaaa
    12421 aaggcatcaa tagcattatt cagcttatca aattaccgat tgagctttta aacagagcct
    12481 catctacttt tggtggagga aatctgattg atacatcagg ttggaaggca agcttagatg
    12541 attttaaact aaaggcaagc cgcgaggcag aagttgttgg tcaatcaatt agccaagcat
    12601 ttgcggatag tatcaccaca gattacatag gcaatgcagt taattcagtg agtgactata
    12661 ttgatggagc ggcagttcgt gggcgcttaa aacgtcaatt agatgaaacc gcctctgacg
    12721 atcaaggtac gcagtcacca gctaaaaaaa cattagctgg aaataataac tctgctagtg
    12781 actggaaaaa ctacctcaat gaacttgaac gagccaatgc cgatggatta gcccgtattg
    12841 cacttgagca agatcgctca atgcgtgaaa tgttggaaaa ggcgaagaaa gccggtgcaa
    12901 gtcacgctga aattgaaaaa gccaaaatgc tgattacaga acgttatgct aaagagcgaa
    12961 tggaaattgc cgagaagtat gtgccgagtc tgaagtttga ggaagaactc aaagatcaga
    13021 ttaaggaaat tgatgaactg caaaagttaa acctgattac caccgagcaa gcaggtcttg
    13081 cgaaagaggc gttagcaggc aaatatcagc cggtagttga aatccaacag caatacatca
    13141 atcaactgag agagattgaa gcattaaaac aagccggtgt attaagcaaa cctcaagcag
    13201 aagtagcggc cgaaaaagcc aaatgggacg ccggcacaca aaaagccaaa atcgcaggta
    13261 aaaacgccgt tagcccttat gaaaaatgga aatcggaatt tgacccaatg caggcaattc
    13321 aaaatgagca agcctcaaag ttggcagaag tgcaatcgat gtacgatcag catttgatcc
    13381 aatatgagga ttttatcaac gctaaagcac aaattgatgc taaggcgact gctgatactc
    13441 atcaactgtt tatgaacagt attagtgggt ttggttcggc gatagatacg atgttaggcg
    13501 tgatgaaaaa cgcagggcaa gagcaatcag gtatttaccg cacgatgttt gcgatgtcga
    13561 aagcgtttgc tattgcggaa tcaattctga acttgaatcg tgcaattact caagcaatga
    13621 gcgatcaaac agctattaca ccggctcaaa aatttgcaaa tatggcggct attgctagtg
    13681 ccggggcgag cttgatttct aatatccagt cagtctcatt aggcggtatg gctcacagcg
    13741 gtattgacaa tgtgccgaaa gaaggcactt ggttgctgga taaaggtgag cgtgtagtgg
    13801 atagtcgtac taaccaagac ttaaaaacct ttttatccaa tgctaatcgt ggcggtgcaa
    13861 gtggtcaaag atcggcgata aatgtcaaaa ttattaataa cgggcaaccc gtagaggcga
    13921 aagtcagcag tgaagagact gtagatggca atatccaaat gacggtggaa ctgctgaa
//
LOCUS       DANLXK010000066        13924 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.066, whole genome shotgun sequence.
ACCESSION   DANLXK010000066 DANLXK010000000
VERSION     DANLXK010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13924
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXD88_001579"
     CDS             complement(89..1024)
                     /gene="ftsX"
                     /locus_tag="PXD88_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL6281147.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXD88_001580"
     CDS             complement(1034..1687)
                     /gene="ftsE"
                     /locus_tag="PXD88_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL6281148.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXD88_001581"
     CDS             complement(1680..3176)
                     /gene="ftsY"
                     /locus_tag="PXD88_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL6281149.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            3255..3845
                     /gene="rsmD"
                     /locus_tag="PXD88_001582"
     CDS             3255..3845
                     /gene="rsmD"
                     /locus_tag="PXD88_001582"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL6281150.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            3929..4243
                     /locus_tag="PXD88_001583"
     CDS             3929..4243
                     /locus_tag="PXD88_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL6281151.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            4256..4768
                     /gene="hpaC"
                     /locus_tag="PXD88_001584"
     CDS             4256..4768
                     /gene="hpaC"
                     /locus_tag="PXD88_001584"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL6281152.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            4886..5758
                     /gene="tehB"
                     /locus_tag="PXD88_001585"
     CDS             4886..5758
                     /gene="tehB"
                     /locus_tag="PXD88_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL6281153.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            5896..6933
                     /gene="purM"
                     /locus_tag="PXD88_001586"
     CDS             5896..6933
                     /gene="purM"
                     /locus_tag="PXD88_001586"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL6281154.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            7011..7289
                     /locus_tag="PXD88_001587"
     CDS             7011..7289
                     /locus_tag="PXD88_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL6281155.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
     gene            7432..8859
                     /gene="aspA"
                     /locus_tag="PXD88_001588"
     CDS             7432..8859
                     /gene="aspA"
                     /locus_tag="PXD88_001588"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL6281156.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXD88_001589"
     CDS             complement(8934..10952)
                     /gene="rep"
                     /locus_tag="PXD88_001589"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL6281157.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            11200..12315
                     /gene="potA"
                     /locus_tag="PXD88_001590"
     CDS             11200..12315
                     /gene="potA"
                     /locus_tag="PXD88_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL6281158.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGMNVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            12302..13165
                     /gene="potB"
                     /locus_tag="PXD88_001591"
     CDS             12302..13165
                     /gene="potB"
                     /locus_tag="PXD88_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL6281159.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            13165..>13924
                     /gene="potC"
                     /locus_tag="PXD88_001592"
     CDS             13165..>13924
                     /gene="potC"
                     /locus_tag="PXD88_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL6281160.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKK"
BASE COUNT         4059 a         2918 c         2726 g         4221 t
ORIGIN      
        1 agcaataata tattgcttat agtaaaaaac caagttccta ggaactggtt tttatctgca
       61 attatttctc taaaaacaac cgcttgtatt agcctctact accaatacgg aaaatatttc
      121 gcattgtcgc aatttttgcc gacagccagc caataaacac acaaagcacc actaagaaga
      181 aggcttcgct gaaatctaat ccgttcagtt caaattgtac ggtaaacata tcagtcacat
      241 acttcactac accggtgaaa tagctaatcg ttaccgcact aaacagcacc gctaacaggc
      301 tgccaaacaa gccgtaaatc atacctgtgt ataaaaacgg acgggcaata aagtgatcag
      361 ttgcccctaa aatttgttgg acttcaatcg ctgctttgct attggcaaca tcggttcgca
      421 cactgtttcc aatcactaaa aaaactgcca acagcattaa taaggtacac accaccgcaa
      481 tacgagcaat cagccaagtt agagcagtta atttttccag ccagccgtta tctaaacgaa
      541 cctcctgcac ccctttaatt tgttgcaaac cgttgcgtag ctccaccatc gtatcagcat
      601 tattaaaatt tgctttcggt tttaaggtaa cgaccgcagg caacgggttt tcatctaaaa
      661 tatctaacgc ttcaccaaag cctgaccaag aacgaaattc gtctaaactt tgttggcgag
      721 aaatatagtt aaatgactca attttatccg tctcaaaagc acgaatgcga tcaacaacgg
      781 tattcacatc gtgttctgcc aaatttttgt gcagataaac ggttaattgt ggctcagggt
      841 aaaattgtgt tgctgcctcg tgggtattct tccaaagtaa ataactcacg gttggaatcg
      901 taagtgagac cgcaatcacc agcaccgtca gaaaagtgcc gagcttgcgt tgcattaaat
      961 cttgccaaac cgctcttaaa gagtagttgg tttgagcacc taatttacta aatgaacgaa
     1021 tcataatatt tccttaaaat ttaagatgcc cttgctccag cactaaacac ggctttggac
     1081 gctttgaaat aatattggta tcgtgggtgg caatcagcac cgttgtgccg gcttgattaa
     1141 attcctcaaa caaacggaaa atttcaaacg agagcttttc atctaagttt ccggttggct
     1201 catcggctaa taacagcgtt gggcgatgaa caatggccct ggcaatatcg acacgttgtt
     1261 gctcaccgcc ggaaaggtgc aacggcagat agttcgcttt atctgccaag ccaacacgct
     1321 caagggcaat gcgggcttca cgctccacaa tcgcttggtt cattcccaaa ataatcaatg
     1381 gtaatgcgac attatccaaa atggttcggt cggttaataa gcgataatct tgatgcacca
     1441 tcccgatttg gcggcgtaaa aacggcaatt catgatgagc aagtcgggta atatcgtgtc
     1501 cgttaaacaa aatttgcccg ccattggcac gctcaatccc cataattaat tttaatagcg
     1561 tgcttttccc cgcaccggaa tgcccggtaa tatatgccat tccaccggca ggtaggtgga
     1621 aatcaatgcc ctgtaaggct ggctttccgc ccttataaac cttgttcaca ttagtgaatt
     1681 taatcattct gttcgtcctc gtggctaaat aaggcttcaa taaattcttc tgcattaaac
     1741 gggcgtagat cttcaatttt ctcgcccacc ccaataaagc ggatcggaat attgaattga
     1801 tcggcaatcg caaaaatcac gccacctttt gccgtaccgt ctaatttagt taaggtgata
     1861 ccggttaaac ccactgcctc attaaacaat ttcgcttggc tgatcgcatt ttgcccagtg
     1921 ccggcatcaa gcgtaagcat aatttcgtgc ggtgcggttt catcatattt tttcatcacc
     1981 cgcacaattt tcttcaactc gtccatcagg ttatttttgt tttgcaaacg ccctgcagta
     2041 tcagcgatta gcacgtcaat cccttttgcc gcagcggatt gcatcgcatc aaaaatcacc
     2101 gaggcagaat ccgaaccggt gctttgtgcc accaccggaa tgttatttcg ctctccccaa
     2161 acctgtagct gttcaactgc cgccgctcgg aacgtgtctc ctgctgctaa cattaccgat
     2221 ttgccttctt gttggaattt acgggcaagt ttgccaatgg tagtggtttt ccccacgcca
     2281 ttcacaccaa ccattaaaat gacatacggt tttttcgctt ccaacactaa cggttgagcc
     2341 accggtttta gcacttcacc cagttccact ttcaactgtt gatacaacaa atctgcatct
     2401 tttaattgtt gcttggtagc atgttgcgtt aaattgttga tgattttttg tgtggtcggc
     2461 atacctaaat ccgccacaag caactgctct tccagctctt caaataactc atcatcaatt
     2521 ttcttgccac ggaagaaatt acggaagccc gaaccaatat tctgcttggt tttaatcaag
     2581 ccttgaatta aacgactgaa gaaaccgcct tgactcggtt tttcttgata ttcatcttgg
     2641 atagtagatt cttcaactgt gtcttgaaca ttatttacta attcagtttc agcaacttct
     2701 tcagccacag cctcttcgac ttgataagta acttgctctt gttcgttgag atctaactgc
     2761 tcagttgcaa tattttgaag attttcgacc gcttgttcgc ctttttgttc ttcaaatgtt
     2821 tgttcgattt tatcttcaac atcatcaaag aacgctttcg cctcttcaac tttttcttca
     2881 acaaactctt tgaaatcttc gactttttgt tcaatggtat cttctacttg ctcagcaaat
     2941 tgctcaattt tttcttcttt ttcctcaaaa tagtcttcta actgatctac cttttcttca
     3001 attttatctt ccagctcatc taatttttca gaaaacgact tctcagtttc cggttcaaca
     3061 ataacaggct gttccggttg aatactctct tgttcttgtt gaatctcttt ctgttcagct
     3121 tcttctttct taccaaatcc aagccaagac caaaaccctt ttttcttctc tgacatattt
     3181 ttctctcatt tctcgtaaaa atagactaaa cttacatagt ctatcaaaaa atcccttatt
     3241 ttcctttagt gagtatgaaa aaaaatcgaa attcccccca atctgttcag caaatgggcg
     3301 aagtacgggt tatcgccgga ctgtggcgag gcagaaaatt acctgtacta aatgccgagg
     3361 ggcttcgccc gacaaccgat agagtaaaag aaacgctgtt taactggtta atgcacgaca
     3421 ttgctcactc acgctgtctt gattgctttg caggcagtgg ctctctgggc attgaagccc
     3481 tttcccgcca agcacaagcg gtcgtttttt tggaaaaatt tgcaaatgct gccaaccagt
     3541 taaagaaaaa tctccaagca ttaaaatccg aacaaggtag cgttattcac actgacaccc
     3601 tcgcctattt agcacaaaaa aataacggtg agccatttaa catcgtattt atcgatccgc
     3661 cttttcatca agggtttgta cctcaagtgc taaacttgct ggcagaaaat aactggctcg
     3721 ccccgaatgc gattttgtat gtggaaaccg agaaaaatca cccgccatta gagctaccgc
     3781 aaggctggca aattttaaag gaaaaagcag ccggaatggt ggtaagccgt ctgattcagc
     3841 tataatcttt ttgtttttta taactaaaaa atataaaata aaacttatct atctaacatt
     3901 ttattaacac tcaaattaga ataacgaaat gaaaaaatta acccctgatg aagccattga
     3961 tattgcctac gatattttct tagaaatggc aggcgaaaat ttagatcctg ccgatatttt
     4021 actgttcaac ctccaatttg aagagcgtgg tgcagtggaa atggtcgaaa cttctgaaga
     4081 ctgggatcaa gaaatcggga ctttaattga ccctgatgcc tttgccgaag tttgggttgg
     4141 cttagtcaat gaacaagatg aaatggacga tgtattcgcc cgtttcttaa tttcccacga
     4201 tgaagaaaac cgtgaatatc acgttgtttg gaaagaaaaa taaaaaggag aaaaaatggc
     4261 taatatcgac actaatcaac caatagaagc ctcgcttaaa tttcgtgaag caatggctca
     4321 cttatcttct gcggtgagca ttgtgacaac caatggcgta gccggcaaag cagggctgac
     4381 ggtttcgtct gtttgttccg ttaccgattc cccaccaacg ctcttatttt gcattaataa
     4441 aaacagccac gttcacgata ttatccaaca aaacggcaaa gtatgcgtta atgtgttaag
     4501 ccacgaacaa gaagacttag caaaacattt tgccgccatt ttagaaagta caatggaaga
     4561 acgctttggt tgggatattt ggaacaacgg ctttgacgat cagcctgtgt tacgcagtgc
     4621 tatttctgct ttacaaggca atattgttga tacgcacgca gtgggtacgc atactatttt
     4681 tgtggtagaa gtgagccata ttgacgtaga gccgaaccac agtttagttt attttgcccg
     4741 ccaatttaga agcgtgaaca ttgactaaaa tatatttaac agaaatttga tcaaatccga
     4801 cttttttagt cggatttttt atttcctgtt tttaaaacag tgctaaaatt ttgccgttta
     4861 tgtttgactg acaaaaggaa acaaaatgga aaatttaatt tgctacaaac aaatgccggt
     4921 gtggacaaaa gcaaccttac cacaaatgtt ccaagaaaag cacaacacca aagtcggaac
     4981 ttgggcaaaa ctcaccattc tcaaaggttc tctcaaatat tatgaattaa ccgaagaggg
     5041 agaaattatc aaggaagata tttttgatgc aaaccaccaa cgcccaatgg ttgagcctca
     5101 actttggcat aaggttgaag ctctttctga cgatttagaa tgccagttgg ctttctattg
     5161 caagccggaa gattattttg ctaaaaaata taatctgacc gctacccatt cagaagtgct
     5221 aaatgccgtc aattatacca aaggtggcaa agcgttagat ttaggttgcg ggcgaggacg
     5281 caatgcactt tatctgaatt tactgggttt tgatgtcact gctgttgatc ataatcaaga
     5341 aagcattgat tttctcaact atatgatcga aaaagaacaa gctcaaaaca ttactaccgc
     5401 tgtttatgat attaacgagg caactatcgg ctcgcaaaac ggtgaatatg acctgattat
     5461 ttccactgtt gtaatgatgt tcttaaaccg tgaacgcatt cctgccatta ttgagaatat
     5521 gcagaaaaac actaaagtcg gcggttataa cttaatcgta tgtgcaatga gtaccgatga
     5581 ctacccttgc ccgatgccgt tctcctttac cttcaaagaa ggcgagctcg ccgattatta
     5641 tcaaggttgg gaattagtca aatataacga agatttagga catttacaca aaactgatga
     5701 aaacggcaac cgcattcaac tacgttttgc gacaatgttg gcgaaaaaaa tcagctaaac
     5761 ttaaccgctt gcagggggaa ttagcttccc cctaattcat caaatccatt ctatttattt
     5821 tcactttttc attccgcaaa cgtttgcttg tgctataatg gcttcgtttt ttagtcattt
     5881 actgttgagg ttaaagtgag caacacacaa ctaagttaca aagatgccgg cgttgatatt
     5941 cacgcaggaa acgagttagt cgaacgaatc aagcctgatg ttaaacgcac ccgtcgccct
     6001 gaagtaatgg gcggattagg tggttttggt gctttatgtg ctttaccgac aaaatataaa
     6061 gagccgattt tagtttccgg taccgatggc gtcggcacaa aattacgctt agccattgac
     6121 ttaaacaaac acgatactat cgggcaagat ttggtagcga tgtgtgtgaa tgaccttgtc
     6181 gtgcaaggtg ctgaaccgct tttcttctta gattattacg ccaccggtaa attagaggtt
     6241 gatgtagcca ccaatgtcgt caaaggcatt gcagacggtt gcgtgatttc aggttgtgct
     6301 ttagtgggag gtgaaacggc tgaaatgccg ggaatgtacc acgaaggcga ttacgattta
     6361 gccggattct gtgtcggtgt ggtagaaaaa tctaaaatca ttgacggttc aacggtgaaa
     6421 accggtgatg ccttaattgc attagcgtcc agtggcccgc attccaacgg ctattcgtta
     6481 attcgtaaag tattggaagt cagccgatcc aatcctgcaa ccgatttatt ggaagacaaa
     6541 cccttaagcg aacacttatt agccccaact aaaatttatg taaaatcaat cctaaaatta
     6601 gttgaagaag ttgatgttca cgctatcgct cacttaaccg gtggcggttt ctgggaaaat
     6661 attccacgcg tattgccgga atctgccaaa gcggtgattg atgaatcgag ctggcaatgg
     6721 ccggcgatat ttagctggtt acaggaaaaa ggcaatatca gccgttatga aatgtaccgt
     6781 actttcaact gcggtgtcgg aatggtgata gccttacctg agagagatgt cgaaaaagcc
     6841 cttactcttc ttaaagagag tggtgaaaat gcgtggctta tcggtaaaat tgaagactta
     6901 ggcaccggta gcgagcaagt tgaaatccgc taatttgcaa aataaatgct aaaattgacc
     6961 gcttgtagta actgatctgc aaacggttaa atttttattg aggaatgcaa atgcaactat
     7021 tttggcctat ctactttgtc ttaatgaacc tagctgcctt atatttaatg tatagtgaca
     7081 aacaaaaagc gatcaaaaaa gaatggcgag tgccagaaat tactctcctc tctttttgcc
     7141 tcttaggtgg ggctatcggt gtttacctag gtatgaaata ctttcgccat aaaacccaac
     7201 attggtattt ccacgtcgct gttgtgcttt ctacttttgc ttggctgatt ggcttgcctt
     7261 acttttattt agctttatca tcatattaat ttatcattac tttttttaat ccgaaagccc
     7321 aatttatatc ctagtccgct cacaaaaaat ttgatttaga tcgcattatt tgtctattaa
     7381 aatcgttatt atctaccaaa atcgattgtc atttatttta aggagatgaa tatgtcagat
     7441 gtgcgtattg aacacgattt acttggtgaa agagaagtac ctaatagtgc ttattggggc
     7501 attcatacat taagagcgat tgagaatttt aatatctcaa atgtcaccat ttctgatgta
     7561 cctgaatttg tgcgtggcat ggtaatggta aaaaaagcta ctgcgttggc aaatggtgaa
     7621 ttgggtgcaa tcccgaaaaa aattgccaaa gctattgtgg cagcctgtga tgaagtatta
     7681 gtgaaaggac gctgtctcga tcaattccct tcagatgttt atcaaggtgg agccggcaca
     7741 tcggtgaata tgaataccaa tgaagtgatt gccaaccttg cattagaaat tttgggcgag
     7801 gcaaaaggta aatatgatat tgtcaatcca atggatcacg ttaatgcaag ccaatccacc
     7861 aatgatgcct atccaaccgg tttccgcatc gcggtttata acagtatcac taaattaatc
     7921 aataaaatca cttacctaca aactgcattt gaaaataaag ccactgagtt ttccgatgta
     7981 ctaaaaatgg gaagaacgca gttacaagat gccgtgccaa tgacgctcgg tcaggaattt
     8041 aaagcttttg ccgtattatt agatgaagag gttcgtaacc ttaaacggac ggcagaattg
     8101 cttcttgaag tgaatttagg cgcaaccgct atcggtactg gtctgaatac gccagagggt
     8161 tactctactc ttgcagttaa atatttagcc gaagtcacgc aactgccttg ctcactgtct
     8221 gaaaatctca ttgaggcaac atctgactgt ggtgcttatg taatggttca cggtgcatta
     8281 aaacgcaccg ccgtcaaact ttctaaagtg tgtaatgact tacgattact ttcatcaggc
     8341 ccacgtgccg gcttaaatga aattaatctt ccggaattac aagccggctc atctattatg
     8401 ccggcaaaag taaaccctgt tgtacctgaa gtcgtaaacc aagtgtgctt taaagtgatt
     8461 ggtaacgaca ccaccgttac ttttgcagca gaggccggtc aattacagct taacgtaatg
     8521 gagccggtta tcgggcaagc aatgtttgaa tctatcgagc tgctttccaa tgcatgtatt
     8581 aatctacgtg ataaatgtat tgacggtatt accgctaacc gtgacatctg ccaaaactat
     8641 gtgttcagct ctattggtat tgtgacctac ctcaatccat ttatcggcca ccataatggt
     8701 gatattgtcg gcaaaatttg tgcaaccacc ggcaaaagtg tacgagaagt tgtgcttgag
     8761 cgaggcttac tcaccgaaga acaactcgat gatattctct cgattgagaa cttaatgaat
     8821 ccgacttata aagccaaacg ctttaccgaa gaggaataat cattgtttac aagcggtctg
     8881 attctggcaa aaaattgcaa atttttacca aaatcagacc gcttgttatc ccattatttc
     8941 ttatttgctt tcagcatcgc cattaaattt gcaatatttg cagaagattt tgcctctttt
     9001 tcctgttcgg tcattcttgg cttttcactt tcccactcca aatcatcttg tggcaattcc
     9061 agtaaaaacc ggctcggctc aggtttgatg atttcgccat attggcgacg ttctttacac
     9121 agtgaaaacg tgagcgtttg ttgggctcgg gtaatgccga cataagccaa acgccgctct
     9181 tcttctacat tgtcctcatc aaggctggtt tggtgtggca gaatcccctc ttccataccg
     9241 attaagaaaa cgtgcggaaa ttccaaccct ttcgaggcgt gaagagtcat tagttgaact
     9301 tgatcggctt catcgtcctc ttcgccacgt tcgagcatat ctcgcaaggt taaacggttt
     9361 accacttgca ccaaattcat cggaggctct atttcatcgc cctctaacat cgcttgcacc
     9421 cattcaaaca aggtctgcac attacggctt tgcatttccg ctacttttgg gttcgccgcc
     9481 atttcataca aataggcttc atactgaatt ttcgccaaca gatcttttac tgcttcaatc
     9541 ggatcggatc tatcggcttg atcggcaatt tccacaatcc agcgggcaaa atcctgtaag
     9601 gcttggtaag gctttggcgt gaggcgttgt atgagttcaa aatcaaaaat cgcctcaaac
     9661 aaactgacct gcttttcatt agcaagtatg cctaattttt ctagcgttgc cgccccaatt
     9721 tcccgtttcg gcgtattcac aatacgcaag aaagctgcat catcgtcttg attcactacc
     9781 aaccgcagat acgccatcat atctttgatt tccgctcgag caaaaaatga cgtaccaccc
     9841 gaaattttat acggaatgcg gttttgcatt agcaattttt ccaacaagcg ggattgatgg
     9901 ttgcctcgat acaaaattgc ataatctttg tatttggtct ttttcgagaa acgatgggca
     9961 atcagctcgc ccacaatgcg ttccgcttcg tgttcctcat tttttgcctc aatgacctgt
    10021 aatttttccc cttgccccag ttctgaaaac agccgcttgc taaacaagtg atcgttatta
    10081 tcaatcagaa tattggcaca atgcagaatc cgctggctgg aacggtaatt ttgctcaagt
    10141 ttaatcactt gcaaatcaaa atcttcccgt aaccgttgca tattttcagg cttcgcccca
    10201 cgccaagagt aaattgattg gtcatcatcg cccacgaccg taaagtttgg ctcgttgccg
    10261 acaatcagct taattaactc atattggctg gtgttggtgt cttgatattc atcaactaac
    10321 aaatagcgaa ttttctgttg ccaacgagat tttgcttcgg gaaattggcg gaacagcaac
    10381 accggcaaca taatcaaatc atcaaaatcc aacgcattat aagccttaag ttgattctgg
    10441 tagagctgat aaaaatgtga aaacactcgc tcacgttcat cacgcacacg agtaagtacc
    10501 ctttcaggcg aaagcaaatc gtttttccag ttagaaatag tggcaattaa ggctttcagc
    10561 agatccttat cttccgtcac attttcaggc aataaatgtt tcagcaaagc aatttgatcc
    10621 tgctcatcaa acaaggtcat acccgattta aaaccgagca atttatattc gcgttttaaa
    10681 atttcaaacc caagtgtgtg aaaagtcgaa atggttaaac ctttgctgtt ttctttgccg
    10741 atagaatgat ccacccgttc acgcatttcc cgagcagctt tgttggtaaa ggttactgct
    10801 gcaatctgct taggcgaata gccacaatgt gcaattaaat gtgcgatttt attaataatc
    10861 acccgagtct tacccgagcc ggcaccagcc agcacaaggc aagccccttt ggtatattct
    10921 actgcttgtt gttgttgaga attgagtttc attgaatcta ttcaaaagta attttgacaa
    10981 ctattttaac ggaaagaaaa caagcggtcg aattttcagg aaaatttgca aaaaactttg
    11041 aaaatccgac cgcttgttca tcagagaaaa atccccaaaa cgcaaatttt tcctttcaat
    11101 cttgcccctt tagctatatc attataagtt gattttttag gggcaaatgc ctgattttat
    11161 aactcctttt ctttttaatt taagggaaaa aaacagtaga tggaaaaagt agaacagaaa
    11221 gctatcattg agcttaaaaa tgtaacaaaa agctacggta gtaaaacgat tcttaaaaat
    11281 ttaaatttaa ccattaacga tggtgaattt ttaacaattt taggcccttc cggttgtggt
    11341 aaaacaactg cgttacgttt aattgccggt tttgaagatt taactgaagg ttcaattatt
    11401 cttgatgggc aagatgtttc taacgttccg gcggagcaac gcccggtaaa caccgtattc
    11461 caaagctatg cccttttccc acatatgacg atttttgaaa acgtggcttt cgggctgcgt
    11521 atgcaaaaag tgccaaatgc tgaaattgag ccacgtgtga tggaagcatt acgaatggtg
    11581 cgtttagaag accgcgctca acaaaaaccg gctcagcttt ccggtggtca gcaacaacgt
    11641 attgcaattg cccgtgcggt ggtaaataaa ccgaaagtat tgttgttaga cgaatcgctt
    11701 tctgcgttag attataaatt gcgtaaagag atgcaaaatg aattaaaagc attgcaacgt
    11761 caattaggca ttacctttat ttttgtgacc cacgatcagg aagaagcctt aaccatgtct
    11821 gatcgtatta tcgtaatgaa cgctggtaaa atcgctcaag acggtacacc acgtgagatt
    11881 tacgaagagc caagtaactt atttgtagct cgtttcatcg gcgaaattaa cgtttttgat
    11941 gcaactgtaa ttgagcgtgt tgatgcaact aatgtaaaag caaacgtaga aggtcgcatt
    12001 tgcaatatca aagtggaaga tttagaggtt cagccgaacc aaaaattaaa agtattgtta
    12061 cgccctgaag atattgtgat tgaggagtta gacgaaaacg aaagctcgaa agcaattatc
    12121 ggtcatatta tcgaccgtaa ctacaaaggt atgacattag agtctagcgt gagattagat
    12181 cataacggta tgaatgtatt ggttagcgag ttcttcaatg aagacgatcc gaacattgac
    12241 cacgaagtgg gacaaaaagt tgctcttact tggtatgaag gctgggaggt tgtgttaaac
    12301 gatgaaggcg aataacaaat tccaaaatgg tgcggtcgca actattttcg gttggttatt
    12361 acttttcgta ttagtgccga acgtactcgt tttaatcatc agcttcttaa cagaaaaccg
    12421 tcaaagtcag tattttgtgg actttgcatt tagttttgat gcttataaat cactgtttaa
    12481 tgacacctat gcagcagtat tgtggaactc gctatatatg gcgggcattg ccaccttttt
    12541 ctgtttgatc atcggctatc cctttgcatt ttttattgcc aaaatgccgg aaagaattcg
    12601 tccgttttta ctgtttttag tagttctacc gttttggact aactcactga ttcgtattta
    12661 tggcattaag attttcttag gcgtaaaagg ctttttaaat gaaagcttga tggctttagg
    12721 tataatcagc gagccaatgc gtttattaaa ctcagaaatt gcgattatta ttggtttagt
    12781 ttacattcta ttacctttta tgattctacc gctttattca tcaatcgaga aaattgataa
    12841 ccgcttacta gaagctgcaa aagacttagg tgcaaacgcc ttccagcgtt ttattaaagt
    12901 gactattcca ttaacaatgc cgggcattgt cgcaggttgt ttattagtat tacttccggc
    12961 aatgggtatg ttctatgtgg cagatttatt aggcggcggt aaaacaccgt tagtaggtaa
    13021 cattattaag agcttgttct taaataccaa ccaatttgca ttaggttcag cagtaagtat
    13081 tgcattaact atcttaatgg cattaatgct ttatgtttac tatcgtgcaa acaaattatt
    13141 aaataaaaag gtggagcttg aataatgaaa aagatgttta gaaacctttt tatgttggtt
    13201 gtttttgcat atctctatat tccaattatc attttagtga tcaactcctt taatgaagac
    13261 cgctttggat taaattggaa aggctttact tggaattggt atgagcgttt attcagtaat
    13321 gatacgcttg tacaagcaac attgaactca ttaactattg cgttctttgc ggcaacattc
    13381 tcaaccattt taggggcatt aacctctatt gcgctttacc gttaccgttt ccgtggtaaa
    13441 aagctagtgg gcggaatgtt attcgtggta atgatgtcgc ctgatatcgt aatggcggta
    13501 tctatgctcg tattatttat gatcttaggt atcaagctag gctttatttc gctattaatt
    13561 gcacacatta ctttctgttt gccttatgtg gtaattgcaa tttcctcacg cctcagcgat
    13621 tttgacggca aaatgctaga agctgcaaaa gacctaggtg caagtgaagt gactattttg
    13681 cgtaaaatta ttttaccact ggcattacct tcgattattt caggctggtt gttaagcttt
    13741 acgatttcgt tagatgacgt tattgtttca tctttcgtga caagcccaag ctacgaagtt
    13801 ttaccactga aaattttctc attggttaaa acaggtgtaa cacctgaagt gaatgcacta
    13861 gcaactatta tgattatttt ctcattaaca ttagtggtat taagccagtt agtagtgaag
    13921 aaaa
//
LOCUS       DANLXK010000067        13888 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.067, whole genome shotgun sequence.
ACCESSION   DANLXK010000067 DANLXK010000000
VERSION     DANLXK010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13888
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(615..1895)
                     /gene="hemL"
                     /locus_tag="PXD88_001593"
     CDS             complement(615..1895)
                     /gene="hemL"
                     /locus_tag="PXD88_001593"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL6281161.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
     gene            2037..3101
                     /gene="wecA"
                     /locus_tag="PXD88_001594"
     CDS             2037..3101
                     /gene="wecA"
                     /locus_tag="PXD88_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL6281162.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            3112..3924
                     /locus_tag="PXD88_001595"
                     /pseudo
     CDS             3112..3924
                     /locus_tag="PXD88_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
     gene            3965..5212
                     /gene="wecC"
                     /locus_tag="PXD88_001596"
     CDS             3965..5212
                     /gene="wecC"
                     /locus_tag="PXD88_001596"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL6281163.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCSQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            5209..5853
                     /gene="rffC"
                     /locus_tag="PXD88_001597"
                     /gene_synonym="wecD"
     CDS             5209..5853
                     /gene="rffC"
                     /locus_tag="PXD88_001597"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL6281164.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            5840..6983
                     /gene="rffA"
                     /locus_tag="PXD88_001598"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             5840..6983
                     /gene="rffA"
                     /locus_tag="PXD88_001598"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(7027..8448)
                     /gene="glnA"
                     /locus_tag="PXD88_001599"
     CDS             complement(7027..8448)
                     /gene="glnA"
                     /locus_tag="PXD88_001599"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL6281165.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            8635..9705
                     /locus_tag="PXD88_001600"
     CDS             8635..9705
                     /locus_tag="PXD88_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL6281166.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            9698..10969
                     /locus_tag="PXD88_001601"
     CDS             9698..10969
                     /locus_tag="PXD88_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL6281167.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            10959..11681
                     /gene="rffM"
                     /locus_tag="PXD88_001602"
     CDS             10959..11681
                     /gene="rffM"
                     /locus_tag="PXD88_001602"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL6281168.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            11840..11916
                     /locus_tag="PXD88_001603"
     tRNA            11840..11916
                     /locus_tag="PXD88_001603"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11874..11876,aa:Arg,seq:ccg)
     gene            11946..12021
                     /locus_tag="PXD88_001604"
     tRNA            11946..12021
                     /locus_tag="PXD88_001604"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11979..11981,aa:His,seq:gtg)
     gene            12046..12122
                     /locus_tag="PXD88_001605"
     tRNA            12046..12122
                     /locus_tag="PXD88_001605"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12080..12082,aa:Pro,seq:tgg)
     gene            12325..13864
                     /locus_tag="PXD88_001606"
     rRNA            12325..13864
                     /locus_tag="PXD88_001606"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         3761 a         2788 c         3329 g         4010 t
ORIGIN      
        1 ttccaatatt gtaatagaac aaaaaaaata attaatgaaa agaagttaca atatcttggt
       61 tttatattgc ataataactc tattagtatt agatcatcgg catttacacg atattcaaat
      121 aaaatgaaac gaggggttag tctagctaag caaactcagg gtaaatataa taggataaga
      181 ataagacgag gggtagctat caaaggcatt tataaaagaa agctattttc taagtattct
      241 catttcggaa aatctaattt tatctcttat ggaaagagag cttattcatc tatggattcc
      301 aaagttataa agaaccaact taaaccttta tggtatagat taaagaaaga aatatatttg
      361 taatattaga aagtgtaaga cttgtccttg cctgcaagtg ttggaagccc atatattgct
      421 ttatcaatcc tattccctcg atagcgcccg tctccagacg ggtgcttgtt taagcataat
      481 gaaagtttgt ataagcactc gtcagagacg aacaccatca taattgctat cgtaagagaa
      541 atttgcacta caagcggtca aattccctca aaaacttgca aattattgag taaacccaac
      601 cgcttgtcat tcttctaaag ctgagcaaat gccttatccg cagcctctag cgtacgagca
      661 atatcttcat cactgtgagc taaagacata aaccctgcct cgaatgccga tggggctaaa
      721 tacacgcctt gttccagcat taagtggaag aaacggttga atttggcggc atcacatttc
      781 attacttctt ggaagttgtt tactgctttt tgttcggtga agaataagcc gaacattccg
      841 ccgacatatt gtaccgttaa tggcacattg tgcttatctg caagagcttt aaagccttca
      901 gcgagggttt tggttttttc cgctaaaatg gtttcatttc ctgcttttga taattcagtt
      961 aagcatgcca aacctgcagc cattgcaatc gggttgcctg agagcgtgcc ggcttggtaa
     1021 accgggccag ttggagcgat gtattccata atctcttttt taccaccaaa tgcccccacc
     1081 ggcattccgc cgccgataat tttgccgagt gtggttaaat ccggtgttac cccatagtaa
     1141 gattgagccc caccgagtgc gacacggaag ccggtcatta cttcatcaat aataaatacc
     1201 gcaccatatt gtgtgcaaag atcacgtaag ccttgtaaaa agccttcttg tggcggaatg
     1261 cagttcatat tgccggcaac aggctcaaca attaaacaag cgatctcatt tgggtattgc
     1321 tcaaatgctg cttttactga atctaaatca ttataggtgc aagtaagcgt atgcttggcg
     1381 aaatcagcgg gtacgcccgg gccgcttggc tgaccgaggg ttaaagcacc tgaaccggct
     1441 tttactaaca gagaatcgga atgcccgtgg tagcagcctt caaatttgat gattttatct
     1501 cggttggtat agccacgagc caaacgaatg gcagacattg ttgcctctgt tccgctgctc
     1561 accattctca ccatttcaat agaaggtact aatttgcaca ctaattcggc aagtgtgatt
     1621 tctgctgccg ttggggcacc gaaacttaag ccttttggca cggcttttag caccgcatca
     1681 ataatcgccg ggtggttatg cccgagtacc attggccccc aagagccgac atagtcgata
     1741 tattgtttgc cgtcgctgtc ggtaatataa gcaccttcgg ctttttcaat aaaaaccggt
     1801 gtgccgccca cgcctttaaa tgcacgcaca ggggagttca caccgcccgg aatcactttt
     1861 tgggcttgtt caaacagttg ttctgaaata gacatatcaa ttcctttctt ttgatgtaaa
     1921 aatttgcctg ttattgtact gaaaagccct tgttttcgct aaaaaattta cgattttgtt
     1981 gccttatgct attctgcatt cctattttat gactcatttt ttgaggcaat ccctgtatgt
     2041 ggcttacttt tttaaccgta tttattgttt cttttttagc cctgattgtg atgcgtccgg
     2101 tggcggaatt tgttggtttg gtagataagc ccaacttccg taaacgccat caggggttga
     2161 ttccgttaat cggtggtatt gcattattta tcggcaatct cactttctat tttatgcagt
     2221 ggcaagatat gcggctgccg gaactgtatc tgacagcggt aactattttg ctgattatcg
     2281 gcgtgttaga tgaccgattt gacatcagcc cattactgcg tgccgggatt caagcagcac
     2341 tagctggggc gatgatttac agtggcttgt cgctcagcag tttagggcaa attattgccc
     2401 cctttagtat agaattaggt tggctcggca ttgtctttac cgtgtttatc accattggcg
     2461 ttattaatgc gtttaatatg gtagatggga ttgatggctt attagcaggg ctttccagcg
     2521 tgagttttgc cggtcttggc actttaatgt tcattaatgg cgaaccaagt ttgggctatt
     2581 ggtgctttgc ccttatcttt gtgttgttgc cgtatgcaat gttcaatttg agcctgtttg
     2641 gggcgaaatg gaaagtgttt atgggcgact caggcagtat gctgatcggc tttaccatta
     2701 tttggattct gctgttaagc acccaagggc aaggctcgcc aattagcccg attaccggtt
     2761 tgtggctgat tgccgtgccg ttaattgata tggttgcggt gattatccgc cgtttgaaaa
     2821 aaggtaaaag tccgttcaaa ccagaccgct tgcacctaca ccatttaatg atgcgagcag
     2881 ggcttacctc tcgccaagca ttattggtga ttaccctctg ggcgggattt tgttccacca
     2941 ttggggtatt aggcgaggtg tattattgga atcagtgggt gatgatgcta atgtttatcg
     3001 ggctgttttt cctatacgcc tattccatta cccacgcttg gcgtgtaacc cgttttgttc
     3061 gccgtctaaa acgccgtgca aaacgtagca aacaacttta aaggatatgt tgtgaaaacc
     3121 ttattttatc gacttttagt gctaatttta tttgctgcta tcggggcagg tgccggttat
     3181 gggctgagtt atactcaacc tgaaaaatgg aaagtgaccg ctcaatttga gcaaccgact
     3241 attcccgatt taggtaatta ttactcgtta ctttccacct accatttttt gaatagtaat
     3301 agccaagaag cgaatagcca aacggcacag caacaggcaa gtgagcaggt ttatgcggaa
     3361 tttaaacgca acctcacgtc cgccgacttg cttcaagcct atttgctaca aacagaagcg
     3421 gtgaaattaa aagctcaggt tgcaaagaaa tcaccggcgg tggtggcggc tgaattagtt
     3481 gaacaattcc gttttgaaaa agatatggca acttcggcag ataatgtcag cttaattgca
     3541 gaaaatgcgg aagaggctca aaaattatta gccgatttta ttccgttggt aaacacctaa
     3601 gctcgagata aattaaacgc cgatttaatt gcgaaatgga aagtcttgtt ccagcaaatt
     3661 aaaactgctt cggagttgaa tattaacggt aagcaaggct cacaagattg ggcagctaaa
     3721 ctgcaaatga tgcgttctgt tcagccgtta gacaaccaac ttacagctta tcgcttggtt
     3781 aaatcgccta gcgttccact taaatcagaa tcgcctgatc cgcctatttt ggctgatgat
     3841 tggggcatta agtggcttac tgctgggctt tatgctcagt tttgcggtga aagcgaaagc
     3901 tcaacctgcg gaactttaat ctaaaatggc acacaattta gtgtgccatt tctctttgta
     3961 actgatgatg agtaaaactg aatttaacac tatttgtatt ctggggttag gctatatcgg
     4021 cttgccgacc tcagtcgttt ttgccaatgc cggcaagcaa gtaattgggg tggatattaa
     4081 tccgcaagtg gtggcaagcc ttaatcaagg caacattcat attatcgagc cggatttaca
     4141 aactgccttc acacaagcgg tcaaaaaagg taattttttt gcaactgcca aaccgcaacc
     4201 ggccgatgct tttatcatcg ccgtgccaac cccactttgc gggaagcagc ccgatctcac
     4261 ttatattcaa aatgccgccg ctatgattgc cccttgtttg cgtaaaggga atttggtggt
     4321 gctggagtcc acttcgcctg tcggtacaac agaaaattta gccgaatggc taagccaagc
     4381 tcgccctgat ttagcctttc cagccgatgt gtctattgcc tactgccctg aacgtgtttt
     4441 gccgggtaat ataatgacgg aattggttga aaatgaccgc attatcggcg gattaagcga
     4501 acaatgcagt caacaagcgg tcgatttata ccaaattttt gcaaaaggac gttgtgtcac
     4561 caccacagct cgcacagcgg agatgtgcaa gttggtggaa aacagctttc gtgatgtgaa
     4621 cattgccttt gccaatgaaa tttcaatgat ttgtgatgcg ttgaagatca atgtgtggga
     4681 gctaattgaa ttggcaaatc ttcacccgag agtaaatatt ctccagcccg gagcaggggt
     4741 gggcggacat tgtttggcgg ttgacccgtg gtttatcgtt tccacatcgc cccaacaggc
     4801 tcgccttatt cgcacggcac gagaagtgaa tgacagcaaa ccgcaatggg taatcgagca
     4861 agtgaaaaca tcggtcgcag actgtgcgat ggagcaagat tgtaagccaa gtgagctaac
     4921 catcgcttgt ttagggctag ctttcaagcc gaatattgat gatttgcggg aaagcccggc
     4981 attagcgatt acccggcaac ttgccgcttg gcatcagggt agcctgttgg cggttgagcc
     5041 aaatattcaa cagctggctg gcgaaaaaat caccttagtc gatctcaaca ccgcactttc
     5101 gcaggcagac attttagtct tgttagtgga tcacacttca tttaagcaaa tttcaaggga
     5161 acagatcagg caacggcata ttattgattg tcgaggagtg tgggtaagat gaagccggat
     5221 caatggctgt ccgatttttt cggtagagaa attgtgcaag taaaagtagc ggctgatgat
     5281 tttaggcaaa tcgctaggtt gcaaaaacaa ggttttgtac ttgtggaggg agaattggaa
     5341 tttgagctgg cacttgcaac attttctgaa aatatgaccg cttgtcgccc ggcggatatg
     5401 gcagatttgc ccgacttgaa cttattgttt ggttcggcat ttcccgatag ccggtttcgt
     5461 tcgccctatt tttcaaggga agagaatcaa cgcttttacc ggacttggat tgaaaatgcg
     5521 gtaaaaggca agtttgatga tattggcttg gttcaatgca atgctgacgg gcaaattcaa
     5581 ggggcggtaa cggttcgctt acttgcccaa cagcaagcga aaatcggatt attggcggta
     5641 aagcctgatt gccgacaaca aggtattggc tcggaattgt taaatgctgc gatagcgtgg
     5701 gcgaaacagc aaaatgcgaa aaaactgatg attaccactc agctgagtaa ccagaaagcg
     5761 attcgttttt atcaagcgtt tggtgcaagc attaaggcgg tgtattattg gttttaccct
     5821 gctttggaaa aatacgatga tgaacaatcc tgattttatt ccgtttaatc aacccccggt
     5881 tgtgggggcg gagcaagcct atatagaaca ggcgatggca acagggcagc tttcgggcgg
     5941 tggtaaattc acccgcttat gtgagcagtg gcttgaaaac ctggcccgta gcaaagtgtt
     6001 gcttacccct tcttgcacgg ctgcgttaga gatggcggca atactgctgg atattcagcc
     6061 ggacgatgaa gtgattatgc cgagctatac ttttgtctct actgcaaatg cgtttgcgtt
     6121 gcgtggggca aagattgtgt ttgtggatat tcgtccggat acaatgaata ttgatgaacg
     6181 caaaattgag caagccatta ccccaaaaac caaagtgatt gtgccggtgc attatgccgg
     6241 cattgcttgt gatatggatt caataatggc aacagccgaa aaatacgggc tttatgtggt
     6301 agaagatgcg gcacaggcag tcaattcgtt ttataaaggt agggcgttag gttccatcgg
     6361 gcatattggt tgctatagtt ttcacgaaac caaaaactat accgctggcg gtgaaggtgg
     6421 ggcgatcgtg attaatgagg catttgctgg aaaaagcgga aatcatcaga gagaaaggca
     6481 ctaaccgtag ccaatttttt cgtggtgagg tagataaata tcgctggcag gatattggtt
     6541 caagtttttt aatgtcggaa attcaagcgg cttatttgta tgctcagctt atagaggcag
     6601 ataaaatcaa ccaacagcgt ttaacccttt ggcacaatta ctatcaagcc tttttgccac
     6661 ttgcccaaac agctaagtgc gagcttcctc gcattggcga atattgtcgc cataacgggc
     6721 atttgttcta cttaaagcta agtgacttga agcagagaac tgcttttatt gattttatga
     6781 aggcacagaa tatcttaacc gtgtttcatt atgtgccgtt gcacagcagt ccggcagggc
     6841 agaaattagg tcgattagca ggtgatgatc gctttactac cttagaaagc gaacggttgg
     6901 taagattgcc actgttttat aatttgagta agcaggagca agagcgtgtt attcaagcag
     6961 tgcttgcttt cttcaatcaa taaaaaacgg ctgagtgttt cagccgtttt ttgctatatg
     7021 ttgttactat gaatagtaaa gttcaaattc taccgggtgc ggagtcatat ttacacgttc
     7081 cacctctttg cgacgaatac cgatataagc atcaataaag tctttcgtga acacgccacc
     7141 ttgtgttaag aattcaaaat cattgcttaa tgcgtcaaga gcggattcta aagacgaggc
     7201 aaccgttgga atatctttta actcttccgg cggtaaatcg tataagtttt tatccattgc
     7261 atcgcccggg tggattttgt tgatcacacc gtctaagcca gccattaaca gggcggcaaa
     7321 gcaaaggtat gggtttgcca ttggatccgg gaagcgtgct tctacacggg tcgctttcgg
     7381 actggtcaca gccggaatac ggatagaggc agagcggtta cttgcagaat atgccaataa
     7441 caccggtgct tcaaaacccg gcactaaacg tttataagag ttcgtggttg ggttagtaaa
     7501 ggcatttaat gcttttgcgt gtttaatgat accgccaata tagtagaggg cagtttcaga
     7561 taagccggcg tatttatcgc ccataaacac atttttgccg tctttgctta atgacatatt
     7621 acagtgcatt cccgagccgt tgtcgccggc gaacggtttt ggcataaagc aagcggtttt
     7681 tccgtgttct acggcaacat tttgcacgat gtatttatag atttgggttt catcggcttt
     7741 taaggtcagg ctgttgaatc gggttgcgat ctcattttgt ccggctgtcg caacttcgtg
     7801 gtggtgagct tcaatcacta aacccatctc ttccatcaat aaacacattt cggagcgaat
     7861 atcgtgggcg gtatcaatcg gtgcaaccgc acagtagccg ccttttttca acggacgata
     7921 ggctttgttg ccttcttcaa atttacggtt ggtattccaa gccgcttcta catcgtcaat
     7981 tcggtatgac acattgttca tttcggtgct aaaacgcaca tcatcgaata agaaaaattc
     8041 aggctcaggt ccaaacatta cgctatcggc gataccggtg gatttcaagt agttttcggc
     8101 acgggttgca atagagcgag ggtcacggtc ataagactgc attgtgtttg ggtcgtaaat
     8161 ggaacaacga atagaaaggg taggaatacg ggcgaaaggg tcaactacag cggtttcagc
     8221 aatcggcatt aacaacatat ctgctttgtt aattgccttc caaccttcta cggacgaacc
     8281 gtcgaacatt ttgccttcct cgaataagtc ttccaaatcg ttggcaacta agctgacagg
     8341 gagcgaaacc ccgtgttctt tacctttaat atcagtaaat tttaataaga caaatttaat
     8401 atcattgtct tgaatcagtt tagatacatt agcgattgcg tttgacatag taaaataagt
     8461 cctcgttggg ataaatgaat aataaaaaag ctcggttatc atagcatttt ttaaccaagt
     8521 gtgtgatgtt ttttagtgtt tcaaagctaa aagaagttgc agtaatgttg caaatttttg
     8581 ctaaaatctt accgcttgca tattgtttgt atggtgggga gagaaaagcg tgtaatgttg
     8641 ccgatttatc atattctagg ctccgagatt gagcatcata accaacaggt tttaaccttt
     8701 tttcagcaag agcttttgcc gttattgcca gactccgaac atttttttta tgtggtaggc
     8761 aagccttcac tgcaaactgc ttttcctcat ttgcggatta agcagttctc ttcacaaaaa
     8821 gcgattgcga acgccttaat tgcaaaaaaa cggcaaaatc cgaccgcttg ttttctgtta
     8881 cacgggcagt ttaacccttg gatttggctg gcgatagcct taggcagatt gccgaccacc
     8941 aacctgattt ggcatatttg gggggcggat ttatatgaaa tggcaacttc gtggaaattt
     9001 aagctgtttt acccgtttcg gcgtgttgcc caacaaaaaa tcttacaggt ttgggcaaca
     9061 agaggcgatc tggatcattt gtggcgaaat atgcgtacaa gatcagaaca ggatcattta
     9121 atctatttcc ccacgaaatt aggtgatcaa ataaaaatta gccccacaca aaatgatcgc
     9181 ttgacgatat tgctcggcaa ttcaggcgat ccagcgaatg agcttattca agccttaagc
     9241 gagattcatc aacgactagg gaacaatgtg cggattatca taccaatggg ctacccggaa
     9301 aataatgaaa gctatattcg gcaggtggaa gcctatagca agcggttatt tttggcggaa
     9361 aatttgcaaa ttttgcggaa gaagctgagc tttgaagagt atgttacgtt attgagccat
     9421 tgtgatctcg gctatttcaa ttttaaacgc cagcaaggca ttggcacgat aagccttttg
     9481 attagccata atgtaccttg tgtgttacat tcagccaatc cgtttgggtt ggatctacag
     9541 gcagaaaaag tgccttattt gttggcggaa aatctgactg cttcacagat tcaaacaacc
     9601 aaacaacaac taaagagcat agataaaaac cgcattgcgt tttttgctcc gggctacact
     9661 aaactatggc aacagcgatt aatcgaatta atgcaaaatg aataatttaa taccacttgg
     9721 cggattttat cttgtttctg tcgggctatt tttcagctta ctttatcaac tttatcagaa
     9781 atcggggatt tctttccatt tactgtttag tttgctctat tttgttactt tttacgccgg
     9841 ttttccgttt tcgttaataa tggcatttgg ctttgattac ccgctgccgg agctaaaaac
     9901 acaatggcaa gtttttacgg cagcaggtgt tggctatttg atttattacg ttgtctattc
     9961 acgcttgtgg agtgctgtgt cgcaaccaac tgctcttgtt gcaaattttc aggcaaaaac
    10021 gaccgcttgt atccttgccg ctgtggcagt tgttgccctg ctatatttcc tttatttaaa
    10081 cggttttctg cttttcaaac tcgaaaaata tagccaactg tttgccaaag atagggtcat
    10141 actttcggca ttaaaacgat ttttctactt tttattgccg gcgttgttaa ttttttgctt
    10201 cctatataag aataaaacag cgtggtgggc gttactgatt gttggtgggg cattcggcat
    10261 attaagctat gtggcagtgg gcggcacatg ggcaaattta gcactagcgg ttggcttttt
    10321 cttattgatt ggattgcagc aaggctatct gtcgttatca aaggtgattg ccgtaagcct
    10381 aatcggcgtg gtggcgatgt tcttcctcgc tctagcccgt tacaaactta ccctttccgg
    10441 tagcgagatg atttacacct tcttatattt aagccgagat actttttcgc cttgggaaaa
    10501 tttggctcgt gtattttcta atgaggtgga atatcaaggt ttaatgccga ttgtgcggga
    10561 tttctatgta tatatcccac aatctttatg gcaagaacgc cctgagatcg tctggaatac
    10621 ggcgaattat tttaccaaag tgattttagg caaccaatca gggttagcta tttcgcctac
    10681 cttactcggc tctttctata ttatgggcgg atttagcgtt atggcgttgg gaatggggat
    10741 agtagctgcc atgattaaag ccttagataa cctattcgct tacgccaaag cgtgcaattc
    10801 cgccttgttg caagcctact gcttcggcaa tttattcaat ttgatcgtat tagtgcgaga
    10861 gggaatcgat gcatttgttt cccgtttttg ctttttcacg ctgatattta tggcttgcta
    10921 tttgctggcg aaaatccttt caatggggaa aaataataat gttcgataaa gtgatcattc
    10981 ggggcattgc gttacaagcg gtcaaaaatc gggaaatttt tgcaaattgg ctgatgaatg
    11041 aaaagcggat tcagttcgga agattagtgg caattaatgc tgagaaagtg attctgtcgg
    11101 aaaaaaatcc gttgttacgc cgagtgatag atgaagccga gttcaactat gcagacggca
    11161 tcagtgttgt tcaatcgatt cgaaaaaaat atccaaacta taaaatagag cgaattgccg
    11221 gagccgattt atgggaaacc ttaatgcaaa gagccggagc gttaaatgtg ccggtgtttt
    11281 tggtcggcag ctcggcggat accctaacga aggtggaagc aaaattggca caatggaagg
    11341 tgaatattgt cggtaggcag aatggctatt ttaaggcgga gcaagaacag gacgttatag
    11401 agcaaattaa agcaagtggc gcgaagttta ttagtgtggc aatgggaact ccaaaacagg
    11461 aactttttat ccaacagtta caacaacaat atccacaagc cttatatatg ggtgttggcg
    11521 ggacttacga tgtgtttgcc ggtaaagtga aacgagcacc taaaatttgg caaaatttgg
    11581 ggctggaatg gctttatcga ctattgaaac agccaacccg ctggcaaaga caattaaatt
    11641 tactaaaata tgcctattac tatctgacaa atcagctcta aaaaacgcat tttttgatat
    11701 ttattaaacg ttttgaataa aataaaacca aacaatacat ttttttacat tttttttaaa
    11761 aagtgctaga caagggaaag tgaaatctat aatatacgcc tccgttgcga cgcattaagt
    11821 tgaattgatg taaatcgaag cgttcgtagc tcagttggat agagcgttgg cctccggagc
    11881 caaaggtcgc aagttcgaat cttgtcgagc gcgccagatg tcaatgcggc actatcaaca
    11941 caatggtggc tatagctcag ttggtagagc cctggattgt gattccagtt gtcgtgggtt
    12001 cgaatcccat tagccacccc attcaatact cttgtgagta tcagacggcg agtagcgcag
    12061 cttggtagcg caactggttt gggaccagtg ggtcgtaggt tcaaatccta tctcgccgac
    12121 caatttattt tttgttcttt aacaatttat cagacaatct gtgtgggcac ttgttgattg
    12181 acttgattga aaaacatttt tttaattttg aagtcttaat aggtgctaac tagaaattca
    12241 ttactttctt ttaacttaat tttaattagg tttaaatttg gaagtgcgat tttatgtcag
    12301 cagtattgag cgattaaact ttttgaattg aagagtttga tcatggctca gattgaacgc
    12361 tggcggcagg cttaacacat gcaagtcgaa cggtagcaca taggagtttg ctccttgggt
    12421 gacgagtggc ggacgggtga gtaatgcttg ggaatctggc ttatggaggg ggataactac
    12481 tggaaacggt agctaatacc gcgtaatgtc ttaggactaa agggtgggac catttggcca
    12541 cctgccataa gatgagccca agtgggatta ggtagttggt gaggtaaagg ctcaccaagc
    12601 ccgcgatctc tagctggtct gagaggatga ccagccacac tggaactgag acacggtcca
    12661 gactcctacg ggaggcagca gtggggaata ttgcacaatg gggggaaccc tgatgcagcc
    12721 atgccgcgtg aatgaagaag gccttcgggt tgtaaagttc tttcggtgac gaggaaggcg
    12781 attgttttaa tagaacagtc gattgacgtt aatcacagaa gaagcaccgg ctaactccgt
    12841 gccagcagcc gcggtaatac ggggggtgcg agcgttaatc ggaataactg ggcgtaaagg
    12901 gcacgcaggc ggttgtttaa gtgaggtgtg aaagccccgg gcttaacctg ggaattgcat
    12961 ttcagactgg acaactagag tactttaggg aggggtagaa ttccacgtgt agcggtgaaa
    13021 tgcgtagaga tgtggaggaa taccgaaggc gaaggcagcc ccttgggaat gtactgacgc
    13081 tcatgtgcga aagcgtgggg agcaaacagg attagatacc ctggtagtcc acgccgtaaa
    13141 cgctgtcgat ttggggattg gggtttaact ctggtgcccg tagctaacgt gataaatcga
    13201 ccgcctgggg agtacggccg caaggttaaa actcaaatga attgacgggg gcccgcacaa
    13261 gcggtggagc atgtggttta attcgatgca acgcgaagaa ccttacctac tcttgacatc
    13321 catggaatct tgtagagata tgagagtgcc ttcgggaacc atgagacagg tgctgcatgg
    13381 ctgtcgtcag ctcgtgttgt gaaatgttgg gttaagtccc gcaacgagcg caacccttat
    13441 cctttgttgc cagcgattag gtcgggaact caaaggagac tgccggtgat aaaccggagg
    13501 aaggtgggga tgacgtcaag tcatcatggc ccttacgagt agggctacac acgtgctaca
    13561 atggcgtata cagagggcgg cgagccagcg atggggagcg aatctcagaa agtacgtcta
    13621 agtccggatt ggagtctgca actcgactcc atgaagtcgg aatcgctagt aatcgcaaat
    13681 cagaatgttg cggtgaatac gttcccgggc cttgtacaca ccgcccgtca caccatggga
    13741 gtgggttgta ccagaagtag atagcttaac cgaaaggggg gcgtttacca cggtatgatt
    13801 catgactggg gtgaagtcgt aacaaggtaa ccgtagggga acctgcggtt ggatcacctc
    13861 cttaccaaaa tcgagaacga cagcaagt
//
LOCUS       DANLXK010000068        13716 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.068, whole genome shotgun sequence.
ACCESSION   DANLXK010000068 DANLXK010000000
VERSION     DANLXK010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13716
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            227..943
                     /locus_tag="PXD88_001607"
     CDS             227..943
                     /locus_tag="PXD88_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL6281169.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(986..1904)
                     /locus_tag="PXD88_001608"
                     /pseudo
     CDS             complement(986..1904)
                     /locus_tag="PXD88_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(1906..3891)
                     /locus_tag="PXD88_001609"
     CDS             complement(1906..3891)
                     /locus_tag="PXD88_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6281170.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFSIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTAAAIYLALVHDIGKVVVDIEITL
                     KDGSRWFAWNGLPPQPYKFKYIKGRDYHLHPVLGGFLANQLIPKSAFDWLGQYPEVIS
                     SLMYAMSGHNDKAGLLSEIVQKADQHSVTLALGGDVNKLVQRPVNSLSKQLVLALRYL
                     LEQKIKLNTPKGPADGWFTEEGLWLVSKTAADNIRAYLLGQGISVPKDNPKLFDEMQS
                     LGIVEESPAGGAIWSCRIQADSGWTPANTFTLLRIKPEVAWENINDRPNYFAGKVKIV
                     EQITEESNIETQSTLVDGTTKPAPLPSVQTGGIIASKEVEISQVETNSDNAPSSEIII
                     NDENDLTSFVLDMFAPTESSEPSLDDISIGKGQEIASMPSKQEVQDKSTTKKLKVTQS
                     AVETPETLTLSELQLQNKENSITGDNFVKWLKSGIATNKFAINKPTAKLHIVEDHLFL
                     VTPVIFEMYLQETGQPYDKETINNLQYDFQGLGIHSPKNTMTNGKPDTINFWKCDVIG
                     PRKTSSLTGYLIKNTRLFFGDKVLLNNHCLTLQKEET"
     gene            complement(4364..4606)
                     /locus_tag="PXD88_001610"
     CDS             complement(4364..4606)
                     /locus_tag="PXD88_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281171.1"
                     /translation="MLNLNLFKRPIEISTLESWSKFCDDVGKVAFVAVPAMLYSNYEF
                     WIKISSIIGLFIATYFCLVIGRNIRQFIEKEKSKWD"
     gene            complement(4696..5679)
                     /locus_tag="PXD88_001611"
     CDS             complement(4696..5679)
                     /locus_tag="PXD88_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL6281172.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
     gene            complement(5759..5914)
                     /locus_tag="PXD88_001612"
     CDS             complement(5759..5914)
                     /locus_tag="PXD88_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281173.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            complement(5928..6341)
                     /locus_tag="PXD88_001613"
     CDS             complement(5928..6341)
                     /locus_tag="PXD88_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6281174.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            complement(6456..7298)
                     /locus_tag="PXD88_001614"
     CDS             complement(6456..7298)
                     /locus_tag="PXD88_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281175.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELKRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            complement(7562..7804)
                     /locus_tag="PXD88_001615"
     CDS             complement(7562..7804)
                     /locus_tag="PXD88_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281176.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            complement(7813..8058)
                     /locus_tag="PXD88_001616"
     CDS             complement(7813..8058)
                     /locus_tag="PXD88_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6281177.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            complement(8130..8483)
                     /locus_tag="PXD88_001617"
     CDS             complement(8130..8483)
                     /locus_tag="PXD88_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281178.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            8858..9301
                     /locus_tag="PXD88_001618"
     CDS             8858..9301
                     /locus_tag="PXD88_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL6281179.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            9298..10239
                     /locus_tag="PXD88_001619"
     CDS             9298..10239
                     /locus_tag="PXD88_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL6281180.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            10254..12260
                     /locus_tag="PXD88_001620"
     CDS             10254..12260
                     /locus_tag="PXD88_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL6281181.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            12281..12709
                     /locus_tag="PXD88_001621"
     CDS             12281..12709
                     /locus_tag="PXD88_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281182.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            12868..13140
                     /locus_tag="PXD88_001622"
     CDS             12868..13140
                     /locus_tag="PXD88_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL6281183.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            13140..13634
                     /locus_tag="PXD88_001623"
     CDS             13140..13634
                     /locus_tag="PXD88_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL6281184.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
BASE COUNT         4207 a         2629 c         2722 g         4158 t
ORIGIN      
        1 acgatccagg tcttacacat tctttcaagt ttgtaaagcc tgaaaattat tttttatact
       61 tgatttttgt caaaaagtct ctacactata tggcagggtc agttttcgct gtttaacggt
      121 gtttaatgag attttcatta ctggctctcc ttaatagaaa tttatggaag agctatctga
      181 tagagtaatc tagcgatagc tctttttcat tgaacaaaga ggctatatgt atcttatgta
      241 tgttgatgag tctggttcta cgacagatcc tactcaaaaa tattttgtat tatcaggtat
      301 cgctgtattt gaacgaaata ctcattggat tgagaaaaaa atgaatgtga tagcctctca
      361 attctgtcaa tattctgaag ggagtgatcc atatttctat gagttacatg gttcaccaat
      421 gagatctgga aagagtgaat ggagaggcat tccaatgagt gagcgtatta atgccattca
      481 agattgcttg aaattagttc aaagtaataa tattcgtata tttgcagcag ttatagagca
      541 agggtattct agtggtcagg atactattac agaatgtttt gagcaaatat catctcgatt
      601 tgatatgtat ctgagccgtt tacatgccca aggtaatacc caaagaggca tttctatctt
      661 tgataaatca tcgactgaga agtcaatcca agcacttgca agaacattca aaaatagtgg
      721 gcatacttat gggaaactta gaaatttctc agaagttcca ttatttcttg actcaaagtc
      781 atcgagatta attcagctag cggatctagt ttcctatgcg atatttagac actatgaaca
      841 caatgatagc tcattttacg atattataag aaataacttt gattatcata acgggcgtat
      901 tcatggttta tatttacgga acaaagaaga tattatttca taaaaattcg ccccaaaagg
      961 gagaagtatc tcccttttgt attttttata acaaattaac cgtttctctc aacatttcca
     1021 catcgtgttc aatatatcct agtgtcacac tgatatcttt atgccctaac agtttctgaa
     1081 ccacataaac attttcgggc ttcttcatta attgagtagc aactgtatgt cgaaatctgt
     1141 gtggtgatga agtaaaaccg accaagtcag aaatatgccg aaatatatgt gtaagctgat
     1201 tttggctcat cggctgtcct cttcttcgag agcatcgaga aaataaattg agattgaaca
     1261 attggcaatt atctgtttgt tttcttattt ttaattcagt aataagcctt tctatatgaa
     1321 tataaagtga atctgaaatc ggtacgatat ggtaatcatg atttttattg atttccggcg
     1381 aaatataaat cgtcctatta gaaagatcta catcactaat tttcagtttc actaattgtc
     1441 ctcgccgaat ccccgtacat ctcaatgtca taataattgc aaggacaaac cagcttggtt
     1501 ttagaaagtc aggtaataca acgttattat tgagtatgtg gtctatttta tgtaattgtt
     1561 cggttgaata agttttcttt ctccttttcg attctcgaat aaataactga ttaaatggat
     1621 ttcgatttat attaagtaat ccttgcgata taccaaagtt atataaggct tttaaatgtc
     1681 tgacataatt attccacgtt actgctttga ttttatcgcc aacaatttga ttacgccatt
     1741 caatgagcat atcggtggta atgtcattgg catttaactt tggataacgc tttttgataa
     1801 ttcggattac gttgttgtag ctccgtttgg tatccggacg aagatagtga cgatagaaaa
     1861 aaaaatcggt ctagtagcga atcaaaagag atagaagtta tcattttaag tttcctcttt
     1921 ctgtaaagtt aaacagtgat tatttaatag taccttatcc ccaaaaaaga gacgggtatt
     1981 ttttatcaaa tatcctgtta aagaggaagt ctttctcggt ccaatgacat cacatttcca
     2041 aaaattgatg gtatccggct taccgttggt cattgtgttt ttaggtgaat gaatccctaa
     2101 tccttgaaaa tcatactgga gattattaat tgtttcctta tcataaggct gtccagtctc
     2161 ttgcaaatac atttcaaaaa taacgggggt aactaaaaac aggtggtctt caacaatatg
     2221 gagcttggca gtaggcttgt taattgcaaa tttgttggtc gcaatacctg atttgagcca
     2281 ctttacaaag ttatctcctg taattgagtt ctccttattc tgtaactgta gctctgatag
     2341 tgttaatgtt tcgggcgttt ctactgcact ttgtgttact ttgagctttt tagtggtaga
     2401 tttatcctgt acttcttgtt tggatggcat acttgcaatt tcctgtccct taccaattga
     2461 aatatcatca aggcttggtt cggaactttc cgtaggtgca aacatatcca gcacaaagga
     2521 ggttaaatca ttttcatcat ttatgatgat ttctgaggat ggtgcattat ccgagtttgt
     2581 ctctacctga gatatttcaa cttctttaga ggcaataatg ccccctgtct gaacactcgg
     2641 taatggagct ggtttagtgg tcccatcgac taatgtagac tgagtctcta tattactttc
     2701 ttctgttatc tgctcgacta ttttaacttt tccggcaaaa taatttggtc gatcattaat
     2761 attctcccaa gccacttctg gtttaattct caataatgta aaggtatttg ctggcgtcca
     2821 acctgaatca gcttgaatac ggcaactcca aattgctcca ccagccggtg attcttctac
     2881 aataccgaga gactgcattt catcaaataa ctttggatta tccttaggca ctgaaattcc
     2941 ctgccccagt aagtaagctc ggatattatc agcagcagtt ttgctaacaa gccacaatcc
     3001 ttcctcagtg aaccaaccgt ctgccggacc tttgggtgta tttaacttta ttttctgttc
     3061 cagcaaataa cgtagtgcca agaccagttg ctttgacaga gaattgacag gacgttgaac
     3121 cagtttattt acatcgccac cgagtgcgag ggtaacacta tgctgatcgg ctttctgcac
     3181 gatctcagat aaaagcccgg ctttatcgtt atgcccagac attgcataca tcagtgaaga
     3241 aatgacttct ggatactgtc ccagccaatc aaacgcagat tttggaataa gttgatttgc
     3301 aaggaagcct cctagcaccg gatgaagatg gtagtctcga cctttgatgt atttgaattt
     3361 ataaggttga ggtggtaacc cattccaagc aaaccaacgt gaaccgtctt tgagtgtaat
     3421 ttcaatatca acgacaactt tgccaatatc gtgaactaag gcaagataaa ttgcagcggc
     3481 agtccaagcg tctcgttgct tagattgttc ttcaggtgcg acattcggtg gcaatatata
     3541 gttttgacgg actttggctg aaaaagcaat aacttccaaa ccgtgatcga gcattccgcc
     3601 gatatgtgaa tgatgatgtg actcggaagc gggtaacagt tgcaccattt cggcataacg
     3661 ctctattggc tgttgataaa gtgcctcaaa catttgacgg ttcattgata cctgttgcca
     3721 aagtagaccc agatattttt ggcgtaattc cgtattaagt agttgggagg catttttcgg
     3781 atataaccag ccctcactat cctgctcaat agagaaaaca ttgtcagatt taaccgaact
     3841 ttgagacgag gatttacttt tgccaagaat ttttttgaga attgagtgca ttgaaataga
     3901 ccgaaaaaga tgatgtttgc gttgaaagaa agccgtttag ccctttgccc ttttgggtaa
     3961 gacctttccc cttggaaagg ttacccttat tcccccttag gggattaccc ttgcccgtaa
     4021 gggctccttt atccttttgc cattgagcgg cttttatctg aaccaaattt aatttataaa
     4081 gggagagtat tgaaccaaaa aataagagaa ctcagtagga aaaactctct gaatatgttg
     4141 gaggattttt gactaatgct gttgagttga gatattacaa tatactgatg atagtaatct
     4201 tatatttgcc accagtacaa aagaaatacg gcacaaaatg tgccgtattt tgaaagttag
     4261 ctatttttta gctgtttaag gcgttcatct tgctttttta gaatatggct tgtccatatg
     4321 gccaacccaa atgcaataaa agcaataatc caaatgccga tcattaatcc cattttgatt
     4381 tctccttctc aataaattgg cgtatatttc taccgataac taaacagaaa taggtagcta
     4441 taaatagacc aattatactg cttatcttaa tccaaaactc gtaattacta tacagcatag
     4501 caggtactgc aacaaaagct actttaccaa catcatcaca gaattttgac caagattcaa
     4561 gtgtcgaaat ttcaatgggt cgtttaaata agtttagatt gagcattgag tcctctcgtt
     4621 aagtgaataa aaagggagac acaatgcccc gaagggagag tatctcccca cgggaaatgc
     4681 ctttcggcaa atttattaag cggcttcttc aaatacttcg tatttatcag ccagctgtgc
     4741 gatgtttaag gcatccagca tatattgaca ggcttcccga gctttccctg aagccctgaa
     4801 aattgcccgt ttatcctctc ttaacacctt gatccaactt tcaatgtagc tggcattttg
     4861 tggcacgtca gcaaagccta ggtgagaaca caagaatgca cagcccattt cagcgaccaa
     4921 ttcttcaaaa gcataaactt tattgccaaa gcgagctttt ccggaaacaa taccatcacg
     4981 agcaaggcga gattgatgcc ctgttgcgtg agtcatttca tgtagcagca cgctatggaa
     5041 tttttgtggt gaatgaaact gcttcatttc cggcatcacg atatggtcat tgcgtgggtg
     5101 gtagtaagct tgattgcttg gttttaccat cacttgcaaa tccatacctt tcaacatcaa
     5161 acgaatctcc tcaaaaatag catactgatt ttcgtcagtc agctgttctg gggtttcaac
     5221 cgtttcatac cagtcctgtg gcagtttttc gcactgttca atattgaata ggcagtgctt
     5281 tttaatcgaa gcgagatgtt cgattaccgg gttaccatcg tcatcgagga caaggttgcc
     5341 atcatcatcg gttttttctc gatcatacgg gcgatagctg accgcaaggg ttgctttttc
     5401 acctttccga acgtgtccac cggcttcaat agctgctttt gcagtgatcc acttgcgttg
     5461 gatatagccg tgttctgcgg cagacaacca aagtaacaaa acattgattc cggaatacaa
     5521 tcttccggat atggcattac acggcatacc accataagga ataacgctat cccaaggttt
     5581 aagccaagga gccgttcctt gctctaaagc ggcgatgatt ttatcggtca cttcttgata
     5641 taaatcaaat ttaggctgtg tgtttgattg agggttcata agtgtttctc caaagttcgg
     5701 gtagaaaaat ggggaaacac tatcgcccta tggggaagtc gtttccccga tgggtagttt
     5761 ataaaatttc aacagcgaca attttccttg tgttatcaaa accgattgaa ctgcctatag
     5821 cgtagtaatt acgaatagtc tgttcatcgg cattgattag ggtaaagaaa taatcgccat
     5881 catcgtaaat aactttaaca gtgcgaggtt ccattatctc acctccatta aagcaaacgt
     5941 tgaaaacaat ttgcagctct gaagttgtaa cttttctcgg ctgcttcagt ttcagtaatc
     6001 attccctgtt ccagcaaaat acgagctatg ccctcataaa acaggtgcag aaaaatggaa
     6061 ataaaacctg ttgtttcaac tttggttgga cggcaatagt attgcttgtc ataccaaatt
     6121 ttgatgtcat ctttgagctt ttgagattcc acaactcgat atacaacgtc tgacacgttg
     6181 attaagttac cgtgaaaatt aagccaaatc gtataacgat tccaatctcc ttttttcatc
     6241 ggctcaatgc agatgtgaaa cagatattga tagactttat tttcaaggtt gcggttatcc
     6301 caaatatatt taagttgctc taaattgtgt tcatttttca taacatttct ccaaattaaa
     6361 aagtggagaa acattttgcc caatagggaa aatatttccc cacggggtga aaattaacca
     6421 ctacaagcgg tcaaattaaa gtaaaaatct gcaaattagg cgtgcaagta ggcaaaacgt
     6481 gctgcattat ggcgagcaga ggcaatcgcc tcaccaataa gctcttgtcg ataaccacta
     6541 aacgaacggt cattcggcga gtaacttatt ccactcaagc gagcaagacc taactgaatt
     6601 tcacttttct tatcggtaac agttgcttca aaatcagcat aacagagttg cccttgacaa
     6661 atctgctcta tagctgcttc aaaatcacac atatcaccaa atgcccaatc aacaagctct
     6721 gaataaaact cagaaggttt acgtttcagt tctactagat atttttccgt attaaatttg
     6781 aaaacggttt ccgtttgata cggcgaggct tcaataattt gataaccgac cgattccatt
     6841 tcacgggaaa tatctttgat gtactgctcc aaatcttcga taaatccgtc ccacaatgct
     6901 ttgtatttat ccacttttga agtaggaaaa taccagtttc ttcgagcatc actatcattg
     6961 aaaaacacta actgatctgc agttttagca taaagctcca tcgtattcca atgcgagtaa
     7021 cgatacccaa agcgatttcg tataatttca aaaccaatat catcgtgggt ttcccaagat
     7081 tcaatgtgcg ttagcaaatt agcaaacatt ttctgtttac gtttctgtgg attgagatga
     7141 ttgaaaagct ggattagatc atctgtacca agccgaccat aaaatgcgac tccatctcct
     7201 tgacaatggc tgagtgaata ctccatatct aaggtatccg gaaaaccagc tttgacaaga
     7261 gcgtgtttaa aataagtgtt taatactgaa tctgacataa tgtttctcca aaataaaaaa
     7321 taatgggaaa cacttaagcc caattcggga aagtatttcc cgatagggta aaaggaaggt
     7381 aaaacggaga acaagctcct cggggaactt gttcccctat gggttagaat ggagttttgc
     7441 tatttagact gtggcttatc tgattttgta aacaaaatat ctcgatttgc ccaagttact
     7501 agaacaataa aaattgttgc caataacgct gttccaatag cagcacctaa aaagtacgga
     7561 ctcatttcgg ttctccttgc tttgaattaa gtattttctc agaatgatgt agtgcgatat
     7621 gcccgataat ccaaatatac aatccccaca aaaaaagaac aaatccttcc gatgtggaaa
     7681 tctgatcatt ggaaattacc attccgacaa aaccagctcc cataagataa ccagcttttc
     7741 taaaatcttc tccgatttta gctagtactt tgggattcat tttgtaaaaa agcttaccaa
     7801 acattgaacc aactatgaac gactgacaat gagcttgccg tcttgctccg atacactcag
     7861 aaagcggaaa tgcagtcctt gtcgggctgg catttgttgc ataaatcgca cgctttgagt
     7921 gcctttatct cgattttgcc aggcttcgag agctttatgg ctaatttcgt gatgtaaggc
     7981 tcgatgttcc ggtgtccatt cattgagttt gattggcaaa atatctccaa cacaggagag
     8041 tttgatatga actgacatac atttctccaa aattaagggg aaatgtatta ccacaaggga
     8101 aatagcattt ccccgatggg tgagttaaat tagattaaag agagctgagt accaaaaacg
     8161 gtagccatac cacataaaaa ggcaataatc gcaacgaata aagccctgaa aaacatctta
     8221 cgcttaatgc gagaaatttc ctgctcatat tcagctgctt gctcatctaa gcacatttgc
     8281 aattctaagg ctcgcatttc atcttcttca gcaattcgtt gattgatgcc tttggttacc
     8341 tcgacatatt tgcttttagc tttatgtttc gccgaaacga aaatattacc gagcttattg
     8401 ccaagtttcc aaaaaagaga aggttttgcg gtttttgacg attcaaatgg gatcacatcc
     8461 catcctgcgg tttgttgact catagcgagt tctcctataa aaagttaaat aaataaaatt
     8521 cctcaggaga tcgcaattcc aagggaattg aaatatccct cggaaggtag gtgtttaggt
     8581 ggcattcctg caaatttgca gcgttccctt tcagaatgct gggagacatt ttgggtaaat
     8641 aactcaacta cctcgatgga tagccgccgc ttctcaagag ttatgcgact tttaagggct
     8701 gtttccacag catcttaata ttccatatca tacgaaatcc atttataaaa tcaaccattt
     8761 tttgctcaaa aaaatatctc ttttttgaaa agagtttttc ctatcctcta tgtaaaaatc
     8821 tcgctaattt tctgcttatt tattcggaaa gagagtgatg aaagcaagta gatttctagg
     8881 atatttcagc atagtaacag tagtgttttc tgtagtggca caagcacagc cgaatatcat
     8941 tgtctataca acaaagatgt accccattca aaattcacaa cttgcctccc aagtttatta
     9001 tcttgatcaa gtagagaatt ttgaagagga aatcagtcga aatctcagta aatcccccga
     9061 gattgccgaa cgagaaatac gagcattctt taattcagca gattggaaag cccaagaaga
     9121 gcaattaaaa gatgcttatc aaggggtgat cagtggatgg caaaatggaa ttaaaaaagt
     9181 gcctgcggtg ttttttaata atctgcaatc ctctccgagc gtgatttatg gtatgactga
     9241 tatacaaaaa gcactagatg aatggcataa atgggttcaa caacacggtg aatcaaaatg
     9301 aaaagagcgt ttttttcggt acttctctct gtaagtttag cagtaccaac aaccttatat
     9361 cctcaacagg taaaagcatc attgaatacg gcgtcgattg ctgcatcaag tgcctcaaca
     9421 agctgtttag actataaagt cgtcggaacg tgcttctggt tattttgcac ctactttgga
     9481 tgcaaggttc gtacatcaac caaaattaag cattatttac cggaaatggt cgtttcatct
     9541 tataaccagg atgggcaaac tccgtggaca gaattacaat ctctcaatcc tggcgtaaaa
     9601 ggcggagaat atcgttctcc gcaacgtcaa tactctcaac taaccttcaa aaatgcagat
     9661 gctttcgggc atccccaagg agcaattggt cagttattag gaagtacagg ctactattgt
     9721 aaaagtcaaa ccacaccatt tataccctat tttctaagtg gattagattt ctttgcttgg
     9781 cgtgaaaata tgccggaaat gttttatccg gaagctctga ttccgggaat gcgggaagtt
     9841 ggccgtgtag gcgatagctg gggaaatatt tacccacgtt ccggttgggt aacacaagct
     9901 cacgattata aagcctctgc aaccattgtg cagagagttg cagacatcgt gacccgaact
     9961 gctcaaccac atatttattt cccggcagcg aaaaaaggtg gtgttggaga atggccacca
    10021 ggacctgtcg aagaaggaca agccagaaca cataaatggc aaatgcttta tcctcaaatg
    10081 tcaaatacct gctctgtttt tccaaatggg gggcaaacag acacctattc ctctcagatt
    10141 tcaaatcaag gtgattatgc ttgggcacta tggcgacctt atagttgttg taaacgccga
    10201 gggcaaacat tcctttacag tattgattgg tcacactaaa acgaggtctt gcaatgaaat
    10261 cacaatttaa attcaagaaa acacatctat tagtaataac agtacttttt tccagtactt
    10321 cctctatctc ttttgctgac tcaatcactg ataaactgga atttagtaag tcggattcga
    10381 ttatttcaga tcgtgtcttt taccaaatcg gcggaggaac aggttatatg gctccaccta
    10441 gtcgtggtaa taccaaagtc gttgatttag gcatcggttg gaaagcgaat ttaacctgtg
    10501 gcaattttga cattaaaaca actattaaaa atgatttaaa cggccttaaa gatggcttta
    10561 aagatttaat ggggaatgtc attgattcag ctaaaggtgc ggttgccagt atgcctgcaa
    10621 tgatattgca acgggccaac cctcaactct acgatttgct gacaaatggt atgtaccaag
    10681 gtaagctgga tttcaaccgt ctaaaaactt cctgtgagga aatgtctaaa gttctggcag
    10741 atcacacact aggaggaaaa tgggggcaag cagcagattt agagagctat aagcaaatta
    10801 cctcgacaca acctgatgcg aagcaagccc aaaaagacct agaagataaa aaagggaaag
    10861 atgggagagt ttgggttggt gggcaacgta aaggtgggca aaaccaagat ccaattaatg
    10921 tcgttggtga tgtagcgaaa ggcggattta atttactcaa taagcggaat gtcttagata
    10981 gcagcccggt ttcaaattgt gaaggtaatc tttgtcagac ttgggataca cctcaagctg
    11041 ctgccgactt cttaactaag attattggtg agcaatcaat ttcaacctgt aaggaggatt
    11101 gtggtactaa aaccagttcg aaagccggtg ttggtttaag tccggaaatt gaagaagaac
    11161 atattcgtac aattgttaaa ttagaaaatg tactgaatat ggatgtgccg aaatccgagc
    11221 tattagctga attaagctca agtagtgtac ctgtcactcg tggcttgatt gaaagcctcc
    11281 gtgatgatcc agatgttgaa cttctcagcc aacgtttatc cgctgaaatt gcgaccagta
    11341 aagtaatgga aaaaatgcta ctggctcgcc gagcaatcct agctggtatg cgagagccga
    11401 atgttgctca aaatgcggat gctcaagtag aactggaaag agtactcaat attattgacc
    11461 gtgaaatttc ccaagtaaaa ctggaaatgg atatgcaaaa aatgatcacc ggcaatacgg
    11521 cttcggtgat tctgcaaagt aaatccgaac gggaagctct tgctggtgct catagtttat
    11581 cccaagatag tctggataag cgtgttcaag gacttgaaaa cggtaatgtt gcattaactg
    11641 atttagagac aggctctaat attaacctct ctcgtagaaa tattgcattg agtatcccaa
    11701 atattccgaa tgtagcagct ctcatcccga ctctaccaaa tagaggtggt tcaggtgtag
    11761 gcggaaattt cccatcactt gcacaaatca gcggttcaac gatggatcag gcaacagggt
    11821 tactgcgtaa ttttgaaggc tttatctcca aggctcaatg ggatgtgaat gcccatcgtg
    11881 taggatatgg ttccgatacg attacacggg cagacggtac cgtagttaaa gtgaccaagg
    11941 atactgtgat taccaaagaa gatgctgaac gtgatttagc tcgcagaact gctatctttg
    12001 cgaacaatgt gagacaagag ttaggtgatt cacattggaa tgcattaccg gcgaacgctc
    12061 aggctgtttt ggtgtcttat gcatataatt acggctcact agcgaaaaca aaaagtgtgc
    12121 ttgacgcagc tagacgatca gctcaaactg gtgatatgac tgctttggca actgctgtca
    12181 gaaatcgcca ggttgataat aacggtatca atgcacgccg ccggaatcag gaagctgatt
    12241 atattcttgg taaaaattaa ccttataagg agttacattt atgcgtaaat tattagtaat
    12301 tactgctctt acactctgca cgaccccagt atttgcagca gataaaaacg taatattttc
    12361 ctgtaccagc acggagggaa aaccgcttac tgttaaacgg gtaggaaatg attacgaata
    12421 ttcgtatgac aaaacaacct tcaaaaatcc gattaaaaag gcagtcacta atgacggctc
    12481 aattatcgcc agaggttcag gttttacaac gtatgcatta gagctggaaa atgatggatt
    12541 gaagtatttg gtcggctttg ttcagccaaa tggcaatgca aaagaattta ttgagccggg
    12601 agcaacgatt agccaaagta aagaacaacc aagtatcggc tctgttgatt gtgatactcg
    12661 taaaaaaagc cattataagt ttgatgttca tttgatgaat actttataat gcctgtatgg
    12721 cactagggcc agcccacgtt aaaaaacaca aagatcggta ggtaaatccc ttaggtttga
    12781 aaatctaagg gattttttta ttgtcatgct tgatttgtac ggtataaata cgtacaatta
    12841 aaactaaata attcaaggag aaaatatatg gcaactgcaa ccgcacgatt tgaagctaga
    12901 atgagccaag aagttcatat gctgttaaaa cgagccgctt ctcttgaagg gcgtagtctt
    12961 agtgattttg ttgttggagc tgcactatct gcagcaagaa aaacagttga gcaaaatgat
    13021 attattcgat tatctgtgaa tgaccaagaa ctttttgcta aagcattgat tgatcctcct
    13081 gaacctaatt tggcaatgca aaaagccttg gcattaagct cacagattct gggggaataa
    13141 tgctttcggg attgaaaata gagtcattta gcaaggaatt taaacgagat tgttttgata
    13201 gtgaatctga attattaaat caatatctca aaactcaggt ttcacaagat attaaaagac
    13261 gtattacttc ttgtttttta gctgttaatt ctgaacagac agtagtagga tattacacac
    13321 tggcttcaac aagtctttca ttatctgatt taccaattac attacagagg aaattaccaa
    13381 gatatcctac ggtacctgcc gtcctacttg gtcgattagc agtagataag cgtgtaaagg
    13441 gattagggtt agggcaagct ctattaggta atgcacttaa aagggtactt cgtgcagata
    13501 tagcagctta cgcattaatt gttgaggcaa aagatgaaag tgcggtcaat ttttatcgta
    13561 aatttggatt tattgacttt gaaaatgagg ctaggaaatt attttttcca ctagataggg
    13621 tgagattatc ttaatggaga gtgattatga aaaataattt tggttattgg ttaggcagga
    13681 aaattcgagc ttttaaagaa tggaatcatc ccactt
//
LOCUS       DANLXK010000069        13518 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.069, whole genome shotgun sequence.
ACCESSION   DANLXK010000069 DANLXK010000000
VERSION     DANLXK010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13518
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(19..4479)
                     /gene="mukB"
                     /locus_tag="PXD88_001624"
     CDS             complement(19..4479)
                     /gene="mukB"
                     /locus_tag="PXD88_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL6281185.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(4655..5371)
                     /gene="mukE"
                     /locus_tag="PXD88_001625"
     CDS             complement(4655..5371)
                     /gene="mukE"
                     /locus_tag="PXD88_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL6281186.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(5420..6763)
                     /gene="mukF"
                     /locus_tag="PXD88_001626"
     CDS             complement(5420..6763)
                     /gene="mukF"
                     /locus_tag="PXD88_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL6281187.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(7028..7915)
                     /gene="galU"
                     /locus_tag="PXD88_001627"
     CDS             complement(7028..7915)
                     /gene="galU"
                     /locus_tag="PXD88_001627"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL6281188.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(8051..8236)
                     /gene="csrA"
                     /locus_tag="PXD88_001628"
     CDS             complement(8051..8236)
                     /gene="csrA"
                     /locus_tag="PXD88_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL6281189.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(8326..10953)
                     /gene="alaS"
                     /locus_tag="PXD88_001629"
     CDS             complement(8326..10953)
                     /gene="alaS"
                     /locus_tag="PXD88_001629"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL6281190.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
     gene            complement(11148..11573)
                     /locus_tag="PXD88_001630"
     CDS             complement(11148..11573)
                     /locus_tag="PXD88_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL6281191.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
     gene            11804..12577
                     /locus_tag="PXD88_001631"
     CDS             11804..12577
                     /locus_tag="PXD88_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL6281192.1"
                     /translation="MKIVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNI
                     IERKKPIQKSQVIFKLGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDA
                     ITNMQHEGYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLL
                     SKMNAEEKLAAFLYNLSQRYSARGFSAKEFRLTMTRGDIGNYLGLTIETISRLLGRFQ
                     KSGMISVQGKYIIINRMEELAELAGAIKPQQNIIAQTTA"
     gene            12721..13512
                     /locus_tag="PXD88_001632"
     CDS             12721..13512
                     /locus_tag="PXD88_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6281193.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
BASE COUNT         3739 a         3068 c         2559 g         4152 t
ORIGIN      
        1 agattaaagt gctaagtttt atttagcaaa gccttttaaa ccaacaacgt gaacatactc
       61 ttggttattg gtgattttac gcaccaattt ataagttgtg cctcgttcag ggctaatatt
      121 ttcaggggct gcaattaata actgcatatc caaacgttcg cagagttcaa atagcgtatt
      181 aattgaggta gcatctaatc gagccgcttc atctaagaac aataagcgag ccggtagaat
      241 atctttggca cgcatacggc gagcttcttc ttcccagctt tgaactacca ttaagagaat
      301 cgacatacct gtaccgatcg cctcaccggt cgataatgca ctactttctg cacgcatcca
      361 gccgtctgca ccacggaagg tttccacttc taaatctaag tagttacggt aatccaataa
      421 ctcttcacca atggtctgtg gtgtacgttg ccccatctca atatgagggt tcacccgttt
      481 atacaacatc gctaaggctt cggagaagct cagtttttgg ctgtcgaata aatctttgtg
      541 ttcctcacga ttattggata acgcattgag taaaatagcg tgcgtatctc ggatattcac
      601 caccaaacgc acccctttta cctgaccgaa tgcaatattt tgtaaacctt ggttcagttg
      661 caaaatgcgt tgttgttcac gctgaatggt tttacgtaaa atatttgcca cactttccgc
      721 actgatcgcc agttttttct cacgaccggt taattcattg gttaagcgtg aaagctcgat
      781 ttccatctgc tcaatcgcat caatcggatc atcggttttg ataatgtctt ggcgaatccg
      841 ctcacgcaaa tgctgataaa ccgcaataaa gaacgccact ttgttttccg gcttgcgact
      901 atcttcagaa gcccgcaagc tatcacgcag gtattcatta tccgccacgg cggtgcgtaa
      961 tgccccgaga gctttatccg aaatcgaacg taattcttca gccgattgat aagccaattc
     1021 acggcgattt aaacgttttt ccacatcgct gttacgagat aaacgttgca caatacacca
     1081 gctggctttt gcctgcacca ccaattcacg ttgtgtatga taatcacgtt cggctttacg
     1141 taaggtgcgg ttaaggttat ccatttccgc ctcgatcacc gcaatttgtt tatctaaata
     1201 acctttgcgg gaacgttgct ggcttaaacg ttgttgcaat tcatcacggc ggaatctggc
     1261 tcgctcttcc gctccgctat caccacgcac gcccaaatcg tcaatttcac gaattaactc
     1321 ttgtagcatt tggtttttcg cctcataaga actgcgtaag ccggtcaata cttggttata
     1381 ttgtgaaagt tgagcttgag cttgacgcag ctgatcacga gcctgttcac gctcacgttg
     1441 tgcattttcc aaacgttggc gtagctgttc ggttaatgca gagccttctg tacccaccgt
     1501 ttcttgatag ctaaaatgga ggcggcgatt cattacatca gccaagctga acactttttg
     1561 ctgtaacact ttttgctcgg caactgaacg gcggtaatcg gcttccaact gttcaaataa
     1621 agccggatca ctttttaatg cggctgcaat cggctcaagt tggcttaatg ttgctccaaa
     1681 ttggcggata aacatttcat cttcttctgc caattctaat tgctcacgac attcctccgc
     1741 tcgtgcttcc agcgtttcat cggctaataa attcgcaagc ggtagaattt tattcaacat
     1801 ttgcaactgg gcttttacgc tttctaattg gtgacgtaat tgctgttcgt taccggctga
     1861 ttgtgccaat tcacgttcaa tttctgcccg ttctgccgca atctcttgca ttaacatttc
     1921 agggttttct tggaacgcta aatttaagtg cgtgccgata aattggctta agtgttgatg
     1981 taaacgctgg catttctgca catcaaaggc acgttcagcg tgtttttctg cggtttcatc
     2041 acgctctgct tttaaagtcg ctaaatgttt ttcacgagca gcacgtccga ataacggcac
     2101 ttcagggaat ttagaataac gccattggcg atcggagact ttcaccacca cgccttcgcc
     2161 taattcctcg gcactaaata ccgcatcgtc aaaggcggac ggatcacctt caattaaata
     2221 aagatcactt gggcaatcgt ctaatttctc tagctgtgtt ttaaccgcct ctaaatcacg
     2281 cactacaata gcgtggcgag cctcgccgta taaggcggag aaataaggcg catcttcaat
     2341 tgatacatca tcatataact cagagagtaa cactccacca aaacgttctg ccaactggtt
     2401 taagcgggcg tcttccgagc cgtccggctg gcttaagcga ttaatttgct catcaagcat
     2461 ttgttcttta cgagccaatt catcacgagc aagggtggct tcacgctctt tgctcagcat
     2521 attttgcata aactgcatca ctgattggct ggcttcaaac ttctcgccac attgctcttc
     2581 taaacgagtc agagccgatt gtgccgtatg ccaagccggt gcattcttcg ctaattgctg
     2641 atattgttga ttaagctgtt cacgttgttg gcgttgggtt gaacgttgtt ctacaaagtc
     2701 cgaaagctct gcctctaaat cttctaggcg agcttgctgc tcttcaaaat aggcgtctaa
     2761 ttcttccgct gaattgagtt gttgttgcga tttttggtta aattccgcca ctaaacgctg
     2821 ggcattttgc tgttgttgca aacgctgttc taaatcgttg agtttttgac gtaaactcac
     2881 cgcttgctga gcttgcattt tttgctcagg gaaggcagaa agtaacgcac gagcctcttc
     2941 ccacgcttgc aagcggtcaa tttcaccgga aattttgcaa accaattcaa acgctttttc
     3001 aaattgggtt ttcgccatat ccgacacgct taaacgttgt tccagctcaa atacttgatc
     3061 ggtaagatct tcggcttgag ccacaaattc tgcgtggtaa tcttcaatat tatttaaatc
     3121 taaattcact aagccggtta gctgtttggc tttttctaac gcattcaccg cttgttggta
     3181 ttgcaatgca cgagtttgct gtgcatctaa ggcttgttgg taatccgcca tttgagaacg
     3241 caattcttca acgtgatcat ctgcctcatc cgcacgagcc tgagcatttt cggcaatttc
     3301 cgcaatttct tccaatgcct cttgctgttc ttccagctta atattcagct cttcaacttc
     3361 gtcttggtag cgttcgattt tctcttggtg gcgtaacgca ttcatcacta aatttagatg
     3421 atcgttcgca ctattgtaat ccgcctctaa cgccagctct gcttcggcaa tatccgcact
     3481 ttcacggcta aattccacaa agcgttgctg ttcgagcaaa attttggatt ttgccgcata
     3541 ccactctttg cgttgctcta aggcttgttg tacattgcca cggcgttcat tcgcattacg
     3601 catataatcc gccgacacat aattggtcga ttcggtaatt aagcgtttga acatatcccg
     3661 atccgattgc gtgaccttaa tcgcctctaa ggtcatacgg ttttcacgca gagcggattc
     3721 catatcttgg aacgcttggc gaacgcccgt attttccggc aacaagtaat cacgcaagga
     3781 tttggtaatc acacttgaaa taccaccata aagcgaggct tcgattaatt tgtagaattt
     3841 gctacggtcg gctgccgaac gaaggcgttt tgggattacg cccaaatcga acataaaact
     3901 gtggtaatca gtaatcgaat ggtactgttt gaattggact tcgctgttct caaattgatc
     3961 tttgagttca tttaacgcca gcactcgagc cttattcccc acttgttcgg tcagtaggct
     4021 gataatgctt tgctcttgag gaatattctg gagcgagaac gaacgaatat cgactttttt
     4081 atcccgtccg acaatttgtt gcaaacgcac gccggtaata atccgttgcc cacgggaatt
     4141 gaatgactct aacaccgcat agcaaacacc cgcttttaac ttaccgtata agcctttatc
     4201 acgagaaccg gcggttgagc ctgcttcagt cgtattacgg aaattaagca aggttaaatc
     4261 tgggatcaag gcggtcacaa accctgccat tgtggtggac ttacctgccc cgttaccgcc
     4321 tgaaagcgtg gtcactaagt catctaaatc aaaggttcga gcaaaaaaac cgttccagtt
     4381 aatcagcgtt aaagagagaa atttaccgcg ttgtacatca ttcgggcgtg caagcggtgc
     4441 aatttgagga ttattttgca attctgtggt atcaatcatt atgttttctc actaattgtc
     4501 ctagcacgct aaagcgtact aggttaggta taggtgagta gctccgctac tctaatcgca
     4561 acctcagcct tggagggctg ctttatgctt aacctagttc ggctttaccg tgtctagggc
     4621 agactcatta aatgctgaat ctattcgaat gaaatcactc attttctccg tcaaaggggg
     4681 cttcatctgc aatattttca tctatttcaa ccgcttgttc gtttaacaac gcaggggttg
     4741 tcgcttcacc atcacgaatt aagcgaagct gtgcctctct tgggtcatca ccggtacgca
     4801 catcagcccc aaaacggaag accgattctg aaatcacaaa ttttttgctg ttttgctcgc
     4861 ctactcgggt aataatgccg atacgggcta atctgcgtaa cgctccgccg gctttttctg
     4921 ccagcttggc acggtctaaa tcggaaccgg tcgaacgtgg gtttaccgct tttaataatt
     4981 tgctttcatc ggcaagactg agtaattctt catacacatc atcttggctg aaaatcccct
     5041 gctgagccaa acgttccgga cttaaataga ggtagcacaa caccttaccc actaacattt
     5101 ccatttctga cattgccgaa cgggcaatta gtgtcgaggc tttcgggcgt aggtagaaaa
     5161 agccttccgg tgctcgaatc aactcaacgt gataacggcg gtaaaaactc tctagttccg
     5221 cttgaaaatc catcaaaaag acgtgttggt caagctgctc ggtattgata tggcgaccgg
     5281 ctcgtaattg gctgtctagc tccggaaaaa tcgggttggc aatcgcaagt gccagtttcg
     5341 gggaaatgaa atcttggata ttctctgtca ttgtcattct cttcaatttt gcaaaattct
     5401 gggtaaaaac gaccgcttgt tatttattgt attggtcgat aacattcgcc tgcacttccg
     5461 ccccttgctc gttaatcggc tgccattgtg ggtaaacggc ttggctatct tggcttgcca
     5521 tacctaactt aacagcttga tcgacaataa tacgagccac gtcaaaatgg cgggattccg
     5581 ggaatcgggc aagctgttca cgcaagataa cgcctaaatc tatcggttta ccttcagcac
     5641 ggaacggcgc taaatgagct tgcattgccg aaacaatttg ctcttgcaca tctgaaagcg
     5701 actcatactc taactcactt ggcaactcgc ccaccgattc tgcctcattt aacattgctt
     5761 catcatcacg caagtccagt aacgaatcgg cttttgcagt ataaagcaac caagggctgt
     5821 tgtaataatc ttgaatcgat tggcgtaacc gttgcccgaa tacacggttt ttgtccatat
     5881 caatcgctgt acgaataaat ttatgcacat ggcggtcata gccgatccaa agatcgatag
     5941 cttgttgtcc ccagctgata atacggtcta acttattttg tagattcaca atcagctgat
     6001 cgataaaatc caaatcatta cgagccatca ggcaactttg aatccgcaat aattgagctt
     6061 gcagtttatc accagcggca tttaaggtat cttgcaactc acgcaaattc cccgaggttt
     6121 cgtctaacaa ttgctcacaa ctcataattg cttcgtgcca gttttggcta agcagttcgg
     6181 ctattcgttc acggatttgg tgctgatttt cgtccataat ccgttgtgaa agatcgatgc
     6241 tgtcaaagat ttccgccacc gaatatttca atggggcaaa cacattattt cgccaaaaac
     6301 gttcatcttg tgcctgctct attccctctt ccgctgctac tgaagctcgc tgaatttcat
     6361 ctgccacaat cgaaagttga atcgataaac gcagggtaga aaattcccgc tggcgaacgt
     6421 aataatttga aattcccacc cctaacggcg taacacgata aatcgccaaa ccttccgtaa
     6481 attcgctact aaaacggttt aacaaccgtt gtctgactaa atcattaatc gcattattgg
     6541 cacgctgggt aaaagtggca tcagattgct caaacgaatt tgaaacataa cggaaaagat
     6601 caataagatc actttctaac aattcaccat ctgtctgttc ttggttataa atagagatag
     6661 caagtagaaa cgctaagcgg tcggaagaaa gcgaaagtga aaattcacga tctttcgtcc
     6721 aagagatgag ttctggaata gtctgtgcca attcgttctg catacgggct taatctttaa
     6781 tttctataca aaaatggtat ttattgtaac tgaatgtaat caaaatggga atggataaaa
     6841 cgcagacaag agaaatgaac aatataagcg gtcaaatatg ggtgattttt tgcaaaaagt
     6901 attttaaagg taaatgaatc cgaaaattta ttatcactac gctaatttat gataccataa
     6961 atagaaaaga ctggatccaa tagaatatca gacacagccc cttagatcat agtctaaact
     7021 ctaaggctta gagtgattta gctaactctt taataaatgc tttaaattct tttccgcatt
     7081 tgtcatgatt taaactatat tctacaaatg ctttcatata gccgacttta taaccacaat
     7141 caaatgagcg ccctgtcata tgaaaagctt caaccgtttc ttggtgaatc aacatatcaa
     7201 ttgcatccgt cagctggatt tcatcaccta cgcctactgg cgttttttct aataaattcc
     7261 aaatatttga ggaaaataca taacgtccta ctaccgctaa attagaaggc gcctcttcaa
     7321 tacttggttt ttcaaccatt ttcgcaatag gcgctgcccc cccgagaggg atatctacac
     7381 catggcagtc agcaacccca tagctactta cattttccat tggaaccggc gcaaccataa
     7441 tttggctata tccggtttct tggaaacgct tcaccatcgc agctaaattt tccgtttttt
     7501 ggtttgctgt aaattcacca agtaatacat ctggtaatac aaccgcaaac ggttcatcgc
     7561 caaccactgt tcgtccacat agaaccgcat gacctaaacc tttggcttgc ccttggcgaa
     7621 cgtgaattaa ggtaacatct tttggtacaa tagaacgtac atcatctaat aattgacgtt
     7681 ttactcgttt ctccagcatc gtttccaatt caaaagaggt atcaaaatgg ttttcgatag
     7741 cattctttga agagtgagta accaatacaa tttctttaaa acctgcagcc acacattcat
     7801 ttacaatgta ttgaataaga ggtttatctg caaggataag catttctttt ggaatagctt
     7861 tggttgcggg taacatgcgc gttcccaatc cagcaacagg aataatgact ttcatttgga
     7921 atcctttgat gacttaacat attagatata actgaaataa accgcttaga cataacaggc
     7981 ggtcaatttt cagaaaattt tgcattgcct gcttcgctgt tatcatctag cagctttaca
     8041 gttaaaatgc ttattccgca ttttcctctt ctactgaggc ttttattctt tcataaatct
     8101 ctcggcggtg tacagagatt tcttttggtg cattcacacc taatttaact tgatttcctc
     8161 ggatgctgag taccgtaatc tcaacatcat ctcctacgag taaaacttcc ccaatcttac
     8221 gagttagaat aagcataatt gtctcctaaa aagtgaaaaa ctctataaat acttaaatat
     8281 agagtaaagt tttaaaggcg agttcagctc gccttgttat tatttttaaa gttttgctgt
     8341 aatccattct tgagcaagtg acaatgcttg caataaatgt tgtggttctg agcctccggc
     8401 cattgccata tcaggacgtc cgcccccttt acctcccact ttttcagcca ttgcaccaac
     8461 taattgacca gcattgactt tatcggttaa atctttggtc acacctacaa tcaaattgac
     8521 tttatcttcc gccgtagtcg caaatacaac aactgcactg cctaattgat tttttaggtc
     8581 atcaaccatc gttctcaatg cttttggttc aacattctct aattgttgaa tcactacatt
     8641 cacgccattg atttgggtag cttgtttggc taaatctgaa cctgcttgtg ctgcaagttt
     8701 atcttttagc tgttgaagct ctttttctgt acgtttagcc ttctcttgta attgaacaat
     8761 tttctcaacg aatgaatgac tgtctgcttt taacaattca gcactttgtt gaacggcttg
     8821 ttgtaaggta tgcaaccaag caatcgcatt ttcaccagtg acagcctcta tacggcgtac
     8881 acctgctgct accgcacctt cagaggtaat tttgaataag ccaatatcac cggtttgttt
     8941 aacgtgtgtg ccgccacaaa gttcaatcga gaaatctgac atttccacta cacgcactac
     9001 ttcgccatat ttttcaccaa ataacgccat tgcacctttc gcttttgcag attcaatatc
     9061 catttcttca atgattacct gaatattttc acgcacttta gcattcacga tacgttcaac
     9121 ttcttcaagt tgtgatttag taattgcttc cggctgagaa atatcaaaac gtaaaatatt
     9181 ttctgacact aatgagcctt tttgagcaac gtggtcgcct agcacttggc gtaacgcaga
     9241 atgcagtaag tgggtagcac tgtggtttaa tgtaatagca tgacgacgct ctctatctac
     9301 gatcgtatta actttgtcgc caacagaaag tgagccggaa gttaattgcc caatatgccc
     9361 gaatacttga ccatattttt gcgtatctac tacctcaaaa ttgcaaattt ctgcggaaat
     9421 ttgaccgcta tctcccactt gtccgcccat ttctgcatag aatggggttt tatctaaaat
     9481 cactaccgca ttttcacccg attgaataga ctcaaccgat tttccattac taaataaccc
     9541 aattacagta gcatcattta agctggtttc agtatatcca ctaaagcatg ttttactgtc
     9601 cactttaatc acattgttat aatctgtgcc aaagctactg ctggctttcg cacgctcacg
     9661 ttgtgcggtc atttctgcat tgaagccgtc ttcgtcaatt ttaatatcac gttcacggca
     9721 aacatctgcg gttaaatcta acgggaagcc ataagtatca taaagtttga acgcaacttc
     9781 gccagataag gtgttatttt caaccttcgc taatgcttct tctaataaat tcaatccacg
     9841 ctcaagagta cgggcaaatt gctcttcttc tgctttgagt gtcttttgaa tatgcgcttg
     9901 tttttgggtc agcacctcac cagcttgccc cattaccgtt gcaagtgttg gcaccaattt
     9961 atagaaaaag gcttcttttg cacccaaaat attaccgtga cgaaccgccc ggcggataat
    10021 acggcgtaat acatagcctc ttccttcatt tgaaggtaaa acaccatcgg caatcagata
    10081 ggaacaagca cgaatatggt ctgccactac acgtaaagat ttattatcta aatctttcac
    10141 attaagcaaa gtagcgactt ctttaattaa agtttggaaa atatccgttt cgtagttgga
    10201 gtttacgtgt tgcattaccg cagtcatacg ttctaacccc atccctgtat ctacagaagg
    10261 cttaggcagt ttttccatcg taccgtctgc taaacgattg aactgcataa atacaatatt
    10321 ccatacctca atatagcggt cgccatcttc ttctgggcta cccggtaagc caccccaatg
    10381 ttcaggcccg tgatcataga aaatctcggt acaagggcca caagggccgg tatcgcccat
    10441 cgcccagaag ttatctgaag cataaggtgc gcctttatta tcgccaatgc gaataatatg
    10501 ttccgatggt acacctactt ctttatgcca aatatcgtag gcttcatcat cagtttcata
    10561 cacagttaca tataattttt cttttggtaa gccaagccat tgtggagaag ttaaaaactc
    10621 ccaaccgaat ttgattgcat cttgcttgaa gtaatcacca aagctgaaat tccccatcat
    10681 ttcaaaaaaa gtatgatggc gagcggtata acctacgttt tctaaatcat tgtgtttacc
    10741 acctgcacgt acacaacgtt gtgccgtagt cgctctgcta taagggcgtt tttctaaccc
    10801 aagaaaaaca tctttgaatt ggttcatgcc cgcattggta aataataatg tcggatcatt
    10861 ctcgggaaca agagagctgc ttggaacaat cgtatgtcct ttagtttgga aaaactctag
    10921 aaaagattgt ctgatatctg aagttgtttt cattaaaaat cactcttttt gtaaatagaa
    10981 gttaaacatt tagttatctt gctattttac acatttttta tgctattggg ggagctatat
    11041 gctacttatt ttttcaatta aataattttt gtaaattttc ccaaaaaaat aaccgcttgt
    11101 aagacagata aactgtctca agcggttatt tttcattcac tttcttgcta ttcatctgct
    11161 aatggcacaa ccagcatatc aacagtgata ttattcatga ctcgacgagt tgaagacata
    11221 aatttactcc agaagtcctg atgatggcca gtgatgagta aatcgacatt gtgtttttct
    11281 acggcctctt ccaaaacttg actaaaatct cccgttccgt ttaaacattc agatacagga
    11341 taatttactt ttgaggcaag ttcagccagt gccgtatttg tttcttcaac aacactgtat
    11401 tgtaccgaag acatattaat atcaattaat cctgtataga gatccgaaaa attaacatca
    11461 acgtgaatga gggaaagttt agctccgcat ttttctgcta acgcagcccc cttacgcact
    11521 aaaacaagac tttcttcaga aagatccact gcaactaaga tatgtttata cataatatgc
    11581 tccttgcttg tgagagttgt ttactttgtg tataaacata ctaacacact ctttttgata
    11641 aaaacttgaa gtagatctca aaaataaaaa tttgattata tttttcatac ctctttgtaa
    11701 gtatttttat ttttccttgg tatactttgc ttcatgtaaa tttaatggta aactttgttc
    11761 taaatcaaat ttaggaatac ttttctaatt taaggttgaa tggatgaaaa ttgtatcaga
    11821 acctaaaaca agcggacgtc atacttgcac aattcattgt caaaattgca gtattagcca
    11881 actatgctta ccttttactc ttaatgaaac ggaattaact caactagata atattattga
    11941 gcgtaaaaaa ccgattcaaa aatcgcaagt tatttttaag ttaggtgatg aactgcgttc
    12001 gctttatgct atccgttctg gaacattaaa agcctatacc ttaagtgaaa gtggtgaaga
    12061 gcaaattacc ggtttccatt tacctggcga tctaattggc tttgatgcaa ttaccaatat
    12121 gcagcacgaa ggctatgctc aagcactcga aacctcaatg atttgtgaga ttccattcga
    12181 tattttagat gatcttgccg gcaaaatgcc aaaaattcgc catcaaatta tgcgtttgat
    12241 gagtaatgaa attaaaagcg atcaagaaat gattctattg ctctcaaaaa tgaatgcgga
    12301 agaaaaacta gctgcatttt tgtataatct ttcccaacgt tactcagccc gtggtttctc
    12361 tgcaaaagag ttccgtctaa ctatgacccg tggagatatc ggcaattatc ttggtttaac
    12421 cattgaaact atcagccgtt tattagggcg tttccaaaaa agcggtatga tttcagtaca
    12481 aggaaaatat attattatta accgtatgga agaattagcc gaattagccg gggcaatcaa
    12541 accgcagcaa aatattattg ctcaaactac cgcttaattt atcttaccaa atcccttttt
    12601 gaaacctcgt tcaaaaaggg atttctgatc cgatgagccg ctaactccat ttgcccgttt
    12661 ttcctatatc cgttataatc gacacaattt tgccccaatc aatataaaag aggaattttt
    12721 atgggtatct taactggtaa acgtatttta gtgacaggtt tagcaagcaa ccgttcgatc
    12781 gcttacggta ttgcaaacgc aatgaagcaa caaggtgcag aacttgcatt cacctactta
    12841 aacgataaat taaaaccacg agttgaagaa tttgccaaag aatttggctc agacattgtc
    12901 cttccgttag atgtagcaac cgatgaaagc attactgagt gctttactga attaagcaaa
    12961 cattgggaaa aatttgacgg ttttgttcac gctatcgcat ttgcaccggg cgatcaatta
    13021 gacggcgatt atgtaaatgc cgcaacccgt gaaggttatc gtattgcaca cgacatcagt
    13081 gcctatagct ttgttgcaat ggctcaagct gctcgcccct tcttaaatga aaatgccgcc
    13141 cttttaacct taagttactt aggtgcagag cgtgcaatcc ccaactacaa tgtaatgtgc
    13201 ttagccaaag cctctttaga agctgcaacc cgtgtaatgg cagccgattt aggtaaagaa
    13261 ggtattcgtg taaatgcgat ttcagccggc ccgatccgta cattagctgc ttcaggcatt
    13321 aaaaacttca agaaaatgct ttctgctttc gagaaaaccg ctgctttacg ccgcaccgta
    13381 actattgatg atgtaggtaa ctctgcagct ttcttatgct cagatttagc ctctggtgta
    13441 acaggtgaag tgttacacgt tgatgccggc ttcagcgtaa tggcaatggg tgaattaggc
    13501 gacgaagagt aattccta
//
LOCUS       DANLXK010000070        13150 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.070, whole genome shotgun sequence.
ACCESSION   DANLXK010000070 DANLXK010000000
VERSION     DANLXK010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13150
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(65..1414)
                     /locus_tag="PXD88_001633"
     CDS             complement(65..1414)
                     /locus_tag="PXD88_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL6281194.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
     gene            1601..2116
                     /locus_tag="PXD88_001634"
     CDS             1601..2116
                     /locus_tag="PXD88_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL6281195.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            complement(2170..3169)
                     /gene="gntR"
                     /locus_tag="PXD88_001635"
                     /pseudo
     CDS             complement(2170..3169)
                     /gene="gntR"
                     /locus_tag="PXD88_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
     gene            complement(3262..4422)
                     /locus_tag="PXD88_001636"
     CDS             complement(3262..4422)
                     /locus_tag="PXD88_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL6281196.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATD
                     NYALVEAAFLHLKQKGINQFAFYGYPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAVKLLYRKLNNLPVSTKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVI
                     HEEKLARATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            complement(4545..4931)
                     /gene="rplQ"
                     /locus_tag="PXD88_001637"
     CDS             complement(4545..4931)
                     /gene="rplQ"
                     /locus_tag="PXD88_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL6281197.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(4967..5956)
                     /gene="rpoA"
                     /locus_tag="PXD88_001638"
     CDS             complement(4967..5956)
                     /gene="rpoA"
                     /locus_tag="PXD88_001638"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL6281198.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(5987..6613)
                     /gene="rpsD"
                     /locus_tag="PXD88_001639"
     CDS             complement(5987..6613)
                     /gene="rpsD"
                     /locus_tag="PXD88_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL6281199.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(6642..7031)
                     /gene="rpsK"
                     /locus_tag="PXD88_001640"
     CDS             complement(6642..7031)
                     /gene="rpsK"
                     /locus_tag="PXD88_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL6281200.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(7048..7404)
                     /gene="rpsM"
                     /locus_tag="PXD88_001641"
     CDS             complement(7048..7404)
                     /gene="rpsM"
                     /locus_tag="PXD88_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL6281201.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(7542..7655)
                     /gene="rpmJ"
                     /locus_tag="PXD88_001642"
     CDS             complement(7542..7655)
                     /gene="rpmJ"
                     /locus_tag="PXD88_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL6281202.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(7680..8999)
                     /gene="secY"
                     /locus_tag="PXD88_001643"
     CDS             complement(7680..8999)
                     /gene="secY"
                     /locus_tag="PXD88_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL6281203.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(9002..9436)
                     /gene="rplO"
                     /locus_tag="PXD88_001644"
     CDS             complement(9002..9436)
                     /gene="rplO"
                     /locus_tag="PXD88_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL6281204.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(9441..9617)
                     /gene="rpmD"
                     /locus_tag="PXD88_001645"
     CDS             complement(9441..9617)
                     /gene="rpmD"
                     /locus_tag="PXD88_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL6281205.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(9624..10124)
                     /gene="rpsE"
                     /locus_tag="PXD88_001646"
     CDS             complement(9624..10124)
                     /gene="rpsE"
                     /locus_tag="PXD88_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL6281206.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(10139..10492)
                     /gene="rplR"
                     /locus_tag="PXD88_001647"
     CDS             complement(10139..10492)
                     /gene="rplR"
                     /locus_tag="PXD88_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL6281207.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(10507..11040)
                     /gene="rplF"
                     /locus_tag="PXD88_001648"
     CDS             complement(10507..11040)
                     /gene="rplF"
                     /locus_tag="PXD88_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL6281208.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(11057..11449)
                     /gene="rpsH"
                     /locus_tag="PXD88_001649"
     CDS             complement(11057..11449)
                     /gene="rpsH"
                     /locus_tag="PXD88_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL6281209.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(11486..11791)
                     /gene="rpsN"
                     /locus_tag="PXD88_001650"
     CDS             complement(11486..11791)
                     /gene="rpsN"
                     /locus_tag="PXD88_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL6281210.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(11803..12342)
                     /gene="rplE"
                     /locus_tag="PXD88_001651"
     CDS             complement(11803..12342)
                     /gene="rplE"
                     /locus_tag="PXD88_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL6281211.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(12360..12671)
                     /gene="rplX"
                     /locus_tag="PXD88_001652"
     CDS             complement(12360..12671)
                     /gene="rplX"
                     /locus_tag="PXD88_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL6281212.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(12682..13053)
                     /gene="rplN"
                     /locus_tag="PXD88_001653"
     CDS             complement(12682..13053)
                     /gene="rplN"
                     /locus_tag="PXD88_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL6281213.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
BASE COUNT         3765 a         2938 c         2587 g         3860 t
ORIGIN      
        1 cggtcgattc tctgccaaat tttgcaaatt ttagaagaaa acagaccgct tgtcagggtt
       61 ggaattagag taaccagctg ccaatcaatg cacaggcaaa accggttaaa ccgatggcag
      121 tttcaagcat tgtccacgtt ttgagggtag ttttttcgtc catttcaagg aaacggctca
      181 tcagccagaa accggagtca ttgacgtggg aaagcaccgt cgcaccggag gcgatagcaa
      241 tcacgataaa acagaggtcg aactggctta aatcagtcgc tgccgccaca gttggcgcaa
      301 tcaacgctgc tgtggtggtt aaagcaacgg ttgccgagcc ttgtgcgaca cggaataccg
      361 tagcaataat aaaggcggca accacaatcg gcattccggt gtctttcatc atttccgata
      421 atacatcgcc aatcccgctg gcacgcaaca cgccaccaaa cattccgcct gcaccggtta
      481 ctaagacaat cgagcagatt gggccaaggg cattgttaca gattttttcg atttggtcga
      541 aactgcgatt atcccgcaac agcataatcg ccacaattaa ggtaatcagt aaagcaacag
      601 gggttttgcc gattaagcga aggctctgca cccacatttc actgccatca atcactttag
      661 caacggagag ggtattcaag ccggtatcaa acaaaatcag gataatcggc agcaccaaca
      721 ccgtgagtac cttgccaaaa cttggcgggt tttgtactgc catttcgttt gccgataagc
      781 cgtttaaaaa cgctttcggc aaatcaacgt gaatgcgttt gctgataaat tggctgaaca
      841 ggtaagtgcc gatataccac gttgggattg cacaaaccaa gcccaccaag actaacagcc
      901 ccatattcac accaagcaga tcgccggagg caaccgggcc ggggtgcgga ggtagaaagg
      961 cgtgcattac cgcaaacgca ccggcagacg gaaacgcata gcgcaacacc gaaccgccga
     1021 actgttttgc cacgctaaaa ataatcggta acatcaccac caagccggca tcaaagaaaa
     1081 tcgggaagcc gaataacagc gaggcaacgc ccaacgcaaa aggcgcacgt tctttgccga
     1141 atttattgat aagcgtatcc gcaagcactt tcgccccgcc ggtgatttca agcaagcgac
     1201 caatcatcgc cccaagcccc accagtaacg ccactgatgc cagcgtacta ccaaaaccat
     1261 tcaacaatgt tggcaggatt ttatctaccg gaataccggc agctaatgca gtgagcaggc
     1321 tcacaataat caatgccaca aaagcgtgga ctttaaattt cataatcagc accagcaata
     1381 aaatgatggc agcaaacata atgaacagta acataggatc tcctaaggtt gaattgttat
     1441 cggtaacata accaaaaagc agtttagagt aaacggttgc agggctttta ttttaaaaat
     1501 gtgatctact tcaagttttc tggaaatagc agatgatttt tcagcataac ctgttacatt
     1561 aacggctaag ttaacgttac cagtaacaca aggaaattca atggcaaacg gcaaagcatt
     1621 tattttgatg ggcgtgtcca gcaccggcaa aaccagcgtg ggaacggcag tcgcacagcg
     1681 gttgggaata aaattgattg atggggacga cttacaccct cgtgccaata tactgaaaat
     1741 ggcaagtggc acgccactca atgatgcaga tcgcacaccg tggttggagc ggattaacga
     1801 tgcagtgttc agttttgaac aaaaaagcga aaaagggatt atcgtctgct cagcattgaa
     1861 gaaaaagtac cgagaccaga tccgacaagg caatgccgat gtgacttttc tattcttgca
     1921 cggctcgttt gaactggtgc tggctcgaat gcaacaacgc aaagggcatt ttatgaaacc
     1981 ggaaatgctt caaagccaat ttaatacgct ggaaattccg caggcagacg aaccagatgt
     2041 gatatttatt gatattgacg gcagttttga cgaggtggtg gagcgttgcg tgaaagcagt
     2101 tgagccgttg ctttaatcac aagtggtgga ttttgcggat ttttttgcaa atttaaccgc
     2161 ttgtccgggc tacacacttt cccccaaatg gatctgatag cccaagttaa ttatggagct
     2221 ttgttgtggt acgccgtgaa tacggttgag cagctcttgg gcggcaactc tgcctatttc
     2281 aaggcgaggt gtgatgacgc tggcaagctg tggcgtgagg gattgcccga catcgtgtcc
     2341 gtgaaagccg gcgattttaa tctgctgcgg cacatgaatg cctaaccgtt ggcactcaaa
     2401 taatgccccg attgccaaat cgtcattggt gcaaaaaatg ccgtctagct gcggaatgtg
     2461 ttgcagggct tgttttagct ggcttgcgcc aagcgtgaaa gaagaatgct ctgcagtagt
     2521 aatgctgtgt gggcttaagc cgtgtttgag cattgcctgt tcgtagccct gcattttcag
     2581 ctgagagcgt ttatccattc tcgccccgaa atacaccacc tgtcggcagc ctcgatgaat
     2641 cattgtctcg accattgctt gagccgcaga aatattgtca atatccgacc gcttgttgaa
     2701 tgccacattc gccgctttcc attatctcaa tcaccggaat attcgccact tccagcattt
     2761 tcaaggtgcg gggcgagtgg tgattttccg ataagataat gccgtcaata ttgtacgaaa
     2821 gcagcgactc aatccgctgc tcttcctttt gttcgctgta accatagtgg gcgagcatgg
     2881 tttgatagct ggcttggtcg gtaatctgct caatgccttt aatcacatcg gcaaacactt
     2941 gattggtaag cgaaggaacc agcacgccaa ttgcacggct tttggcattc gagagaatat
     3001 ccggtgcacg gtttgggata tagccaaaca gctcaatcgc ttgtgcaatc cgctcgccgg
     3061 tctccttggc aacggtgttt ggatcccgca aaaagcgact gaccgtcatt ttggtaatgc
     3121 cgagatgggt agcgatgtct tgcaaagttg ggcgtttcgg ttttctcatt ggaatagata
     3181 acgaaaaaat ttaatttcgc tgattataac tgaagataag gcaataattg caaaatattc
     3241 ggtgaaattg accgcttgtt actactcttg cctgaactct ttcggggttt taccaaactc
     3301 ttttttaaac acggcataga aatattgtaa agagggataa ccgcacacat tggcaatttc
     3361 ttgggtcgaa atctcggtaa atttgagcat atatgttgct cttgctaatt tttcctcgtg
     3421 aatcacctgg tgaattgtct tattcatttc ctgcttaaaa cgctgttcaa ggttagagcg
     3481 ggaaatttta agatgatcca gtacttgctc tactttaatg ccttggcaag ctcggtgacg
     3541 aataaagtgc atagcttgga ttaccattgg gtcttgcaaa gaacgataat cggtcgaacg
     3601 gcgttcttcc acttttaccg gcgggattaa aatcggcttg gttgaaaccg gtagattatt
     3661 taattttcga tataataact tcacagcgtg atagccgatt tgtgatgttc cttgtgtgac
     3721 tgaagaaaga gaaacccgag agaggtattg aatcaactct tcgttatcaa tgccgatcac
     3781 gcaaagttgt tcaggtacag cgatttttaa atgctcacag gtttgaagca ggtgtcttgc
     3841 ccttgcgtca gtaacggcaa taatgcccgt gtgggctggt aaggtttgta accactcgcc
     3901 taatttggct tgtaattcaa cccaattatc tgaatgaaat tgatcaccaa tataacaatt
     3961 tgggtgatgt tcatattttt ccatcaactg aataaaggca ttttttcgct ctatcgccca
     4021 atgtttttcc gtttctgcag gatagccgta aaacgcaaat tggttgattc ctttttgttt
     4081 taggtgtaaa aatgctgcct caactaaggc gtaattgtcg gtagcaacat aaggaaggtc
     4141 agggtaatag tcagggtttt ggtaagaacc gcctactgct acaatgggga cgtcaatatc
     4201 tttaagtagc tcaactgttt ccaaatcgtc aaaatcggca ataatgccgt caatcgacag
     4261 gctttcgata ctatttttat gatagacaaa atcatcttcc acaaaaatat cccaagtaca
     4321 ttgtgatgct tgaataaact gcccaatgcc ctgcattact cctctgtcat aaattttgtt
     4381 agcattaaaa agtaaggcaa ttttataaga ttgttctatc attacttcct ccagtaccca
     4441 ctttcaaaag taactataaa ataaaattat tttttgatca aaacgaataa aagaataaaa
     4501 ccccggtatt tctaccaggg ttttaagctc aattttgatt aagattattc cgcagctgct
     4561 tcagttgcaa cttctgggcg atccactaac tcaatgtaag ccattggagc attatcacct
     4621 gcacggaaac cacattttaa aatgcgagtg taaccacccg cacgttgtgc aaaacgtgga
     4681 cctaattcat tgaataattt agcaactgta tcaacgttgc gtgtacgggc aaaagctaaa
     4741 cggcgatttg caacgctgtc tgctttagct aaagtaatta acggctcaac tacacggcgt
     4801 aactctttcg cttttggtaa agttgtcttg atgatttcgt gttcaacaag cgcacttgcc
     4861 atattacgga acatcgcttg gcgatggctg ctgttacggt ttaattgacg tccactctta
     4921 cgatggcgca taacctattc cttcttagaa aatctatacc gaaaaactag tcttctgcaa
     4981 tacttgcagg tggccagttt tcaaggcgca taccgagtga taaaccacga gaagcaagaa
     5041 catccttaat ctctgtaaga gattttttac ccaagttcgg ggttttaaga agttcaactt
     5101 ctgtacgttg tactaaatca ccgatatagt gaattgtctc tgctttcaaa cagttagcag
     5161 aacgaactgt cagctctagg tcatctactg gacgaagaag aataggatca aattccggtt
     5221 tttcttcttt cacttcaggt tgacgaacat cacgcaaatc aacgaatgca gcaagttgtt
     5281 ctgctaaaat cgttgcagca cgacggatag cttcttcagg atctaacgtt ccgttagttt
     5341 ccatctcaat aacaagttta tctaagtctg tacgttgttc aacacgagca gcttcgacat
     5401 tgtaagcaat gcgatctaca ggtgaaaaac gtgcatctac taataaacga ccgatagggc
     5461 ggtcatcgtt ttgagtatga agacgtgctg atgcaggaac ataacctcga ccacgttgaa
     5521 cacgaatgcg catattaatt gatgcattct tatctgttaa atgacagatt acgtgatcag
     5581 gattcacaat ttctacatcg ccatcgtgtg tgatgtcggc tgcagttaca gggccaattc
     5641 cagatttatt tagtgtcaaa ataatatcat ctttattttg cacttttacc gctagacctt
     5701 taaggtttaa taatacctca agaatatctt cctgaacgcc ttctttgctg ctgtactcat
     5761 gcagtacacc atcaatttca acttcagtaa ctgcacaacc cggcatagat gaaagtaaaa
     5821 tgcggcgaag tgcgttacct aatgtatggc caaaaccacg ctctaacggc tctaatgtca
     5881 ctttagcatg agttgaacta acttgttcaa tatttactaa gtgcggcttt aaaaattctg
     5941 tcacagaacc ctgcattttt tcctctcttt gcggttaagc taactattat ttagagtaaa
     6001 gctcaacgat cagatgttca ttaatatctg ctgatagatc agaacgctct ggacgacgtt
     6061 taaatacgcc ttccatttta gttgcatcaa cttctaacca agttggtttt tcacgttgag
     6121 ttgctaattc taatgatgct ttaatacgtg cttgtttttt cgatttttca cgaacagcaa
     6181 caacatcatc aacagaaact tggaatgaag gaatgtttac tacacgaccg tttactacga
     6241 ttgatttatg gctaacaagc tgacgtgctt ctgcacgtgt tgctgcaaaa cccatacgat
     6301 aaactacgtt atctaaacga ccttccaata atactagtaa gttttcaccg gtattacctt
     6361 ttaagcggtt cgcttctgta taataattac ggaattgacg ctctaagata ccataaatac
     6421 ggcgaacttt ttgtttttca cgtaattgac taccatagtc agataaacgt ggcttgcgag
     6481 caccatgttg accaggcgct acatcaagtc tatttctaca ttttgattca atcgcacgaa
     6541 cgcctgattt taagaataaa tcagtacctt cacgacggct tagcttgagc ttaggaccca
     6601 aatatcttgc cattttcttt ctccaattct tttaacgtca attaaacacg acgttttttc
     6661 ggtggacgac aaccgttatg tggaatcgga gtcacatcag taatattcgt gatacggaaa
     6721 cctgctgcat ttaatgcacg gattgttgac tcacgacctg gacccggtcc tttaaccata
     6781 acttccaaat tctttaaacc aaactcttta accatttctg cacaacgctc tgcagcaact
     6841 tgagcagcga atggagtcga tttacgagaa ccacggaaac ctgaaccacc tgcagttgcc
     6901 caagctagag cattaccttg acggtcagta atagtaacga ttgtgttatt gaaagatgcg
     6961 tggatatgag ctacgccatc tgcaatctgt ttttttacgc gcttacgtgc gcgaactggt
     7021 gttttagcca ttatttatct actccgacta ttttttgatc ggtttgcgtg gacctttacg
     7081 ggtacgcgca ttagtcttag tacgttgacc acgtaccggt aaactacgac gatgacgtaa
     7141 accacggtag caacctaagt ctaaaagacg tttgatgctt aaagttactt cacgacgtaa
     7201 atccccttcg acagtaaatt taccaacttc ttcacgcagt ttttcaatct gctcttcaga
     7261 caattctctg atctttacat cttcagcaat acccgttgca gcacagatgg cttttgcacg
     7321 agttttaccg ataccgtaaa ttgcagttaa tgcgattaca gtgtgttttt gatcaggaat
     7381 gttaatgcct gcaatacggg ccactatgca ctcctattat ttaagtttat tgatatactg
     7441 atcttgaaaa gcccgtttca ggatactcaa acagtatatc aggacgaatg agctgagcag
     7501 tataactgct cagcgggttc tttgcaagaa atatgcgtaa attaaccttg acgttgtttg
     7561 tgtttaggat cgctacaaat tacacgaacc acaccttcac gtttgattac tttacaatta
     7621 cggcacattc tttttactga agcacgaact ttcattgctt atcctttatt aacggcctat
     7681 taatttagac cttttaagtt agctttcttc aacacagaat catattgttg agacattaaa
     7741 tgactctgaa cctgtgcgat gaaatccata ataacaacca ctacaatcaa taatgatgta
     7801 ccacctaatt ggaatggcac cttccataac gacgtaatga tgtaaggaac caaacaaaca
     7861 aaagcaatat ataacgcacc aattaaggtt aaacgtgtca ttactttatc gatataacga
     7921 gatgtttgtt cgcctggtcg gtaacctggt acaaacgcac ctgatttctt aagattatcc
     7981 gctgtatcac gaggattata ctgcattcct gtataaaaga aagcaaagaa aatcactgcc
     8041 attgtgaata atacaacata cagtggttga cctggctgta atagttgtga aaggttaaat
     8101 aaccactcaa atccttcgct ttgaccaaac cattgagtaa tgcttgccgg gaataaaata
     8161 atacttgaag caaaaattgc cggtattacc cctgccatat tcacttttaa tggtaagtga
     8221 gaagttcttg caggcgccat cattcgacct tgttggcgac ttgcatagtt tacaactatt
     8281 cttctttgtc cacgttcaac aaaaacaaca aaataagtta ctgcaaatgc aattattgca
     8341 actagtagta agacgataaa tgataactcg ccttgacggg cttgttctat tgtctgccct
     8401 atcgttgctg gaagatctgc aacaatacct gtaaaaataa tcaatgagat accgtttccg
     8461 ataccacgct cagtgatttg ttcgcctagc cacattagga acattgttcc tgtcactaag
     8521 cttactacag aggttacata gaataatata cttggattag gaactaatcc atgtaccata
     8581 ttcggtaggg ctagtgaaat accaatagat tgaataaatg ctaataacag tgtgccatag
     8641 cgtgtatatt tactgatttt ccgacgacct gcttcacctt ctttctttaa ttcagctaga
     8701 ggtgggtgaa tcgctgtcaa taattggata ataattgacg ctgaaatata aggcataata
     8761 cctagtgcaa atatagatgc acggcttaaa gcaccaccag agaacatatt aaacatatca
     8821 atgatggtgc cttgctgttg tcgaattaat tcggataata cagaagcatc aatgccagga
     8881 acaggtataa aagaaccgat acggaaaacg attaacgcac ctaaaacaaa caatagtctt
     8941 gatttaagct cgccagtccc tttttgtgta ctaccttggt accctggttg ctttgccatc
     9001 tttattcctc gatagaaccg ccagcagctt caatagcagc tttagcgcct ttagttacac
     9061 gtaagccttt aacaactact gctctttcaa ttttgcctgc taaaattact ttagcagata
     9121 aaatatcttt agtaatgatg tttgctgctt ttaatgtctc taaagttact tcgttgccat
     9181 ctactttagc taagtcgttt aaacgaattt cagccacatg gaatgatttt aatgaagtaa
     9241 aaccaaattt tggcaaacga cgatataaag gcatttgacc accctcgaaa ccacgacgaa
     9301 caccgccgcc tgtacgagat ttttgacctt tatgaccgcg cccaccagtt ttacctaaac
     9361 cagaaccaat accacgacct agacgttttg cactgtgctt agcaccttca gctggagaaa
     9421 gagaatttaa acgcattcta ttactcctct actttaacca tataagacac ttgattgatc
     9481 ataccacgca ctgctggtgt atcttcaagt tctacagtat gacgaatatg acgaagacct
     9541 aagcctttta acgttgcttt atgtttcggt aaacgagcga tagagctacg agtttgagtt
     9601 actttaattt ttgccatatc caattacccc aaaatttctt caactgtttt gccacgtttt
     9661 gcagcaacca tttcaggtga tttcatgttc tcaagtgcat cgattgttgc acgaacaacg
     9721 ttaattgggt tagttgaacc atacgcttta gaaagaacgt tacgaacacc cgcaacttct
     9781 aatactgcac gcattgcacc accagcgatg atacctgtac cttcacttgc tggttgcata
     9841 aatacgcgtg aacctgtatg tgaaccttta actggatgtt gtaatgtacc ttcatttaaa
     9901 gctacattaa tcatattgcg acgagctttt tccatcgctt tttggattgc tgctggaact
     9961 tcacgtgctt taccgtgacc aaaacctaca cgaccgttac catcgcccac tactgttaaa
    10021 gcagtgaaac tcataatacg accacctttt acggtttttg aaacacggtt aaccgcgatt
    10081 agcttttcct gcagttcacc agcttgtttt tcgatgtttg acatctcaaa ttcctctatt
    10141 agaactgtag accagcttca cgagcagcat ctgctaatga ttgcacacga ccgtggtatt
    10201 taaaaccaga acggtcaaaa gcaaccgctt taataccttt ggcaattgca cgctcagcaa
    10261 cgattttacc cactactgct gcggcttctt tattgccggt atatttaact tgctctttaa
    10321 ttactttttc aacagttgaa gctgctgcta gtacttctga gccattaggt gcaatcacct
    10381 gcgcatagat atggcgaggt gtgcgatgca caactaaacg tgttgcacct tgctctctca
    10441 ttaaatgacg tgcacggctt gcacgacgga tacgagctac tttcttatcc atagtgttac
    10501 cttactttac tttttcttcg cttcttttgt acgcactact tcatcagagt aacgtacacc
    10561 tttaccttta taaggttcag gtttgcgata tgcacgaata tctgctgcca cttgaccaat
    10621 taactgtttg tcagcacttt tcagaataat ttctgtttgt gatggacatt caccagttac
    10681 gcctgctggc aacgtgtgtt ctactgggtg agagaaacct aaacttaaag caacagcatt
    10741 gcctttcatt tgtgctctat aaccaacacc cactaattgc aatttcttag taaagccttc
    10801 agtaaccccg attaccatat tatttactag tgcacgagca gtacctgctt gagcatctgc
    10861 attagcgata ccttcacgtg gagcgaaagt taatgcatct gcttcttgtt ttacttcaac
    10921 tgcattgtga atttcacgag ataactcgcc gtttttacct ttaactgtta atagctgacc
    10981 gttaagtttt acctcaacac cggcaggaat attaacaggt gcttttgcaa cacgagacat
    11041 ttttcctacc tctctattat gctacgtaac agataatttc accgccgagg cccgcttgac
    11101 gcgcagcacg gtcggtcatt acacctttag atgtagaaac aactgcgata cctaaaccac
    11161 ccattacttt tggtaattcg tctttgcgtt tataaatacg cagacccgga cggctcacac
    11221 gttggatact ttctacaacc ggtttgtttt ggaaatattt taaagtaatt tccagttcag
    11281 gtttaacacc ttcaacaact ttaacgcttt cgatataacc ttcttcagct aaaacatttg
    11341 caatagcaac ttttaactta gatgaaggca tactgattgc aactttgttc gcagcttgac
    11401 cgttacgaat acgggtcagc atatctgcga ttggatcttg catgctcatg tatttactcc
    11461 catgattcca aattaaaaga ggttattacc agcttgcctt cttaagaccc ggaatttcac
    11521 cgcgcatagc agcttcacga accttaatac ggcttaaacc aaacttacga agtacgccat
    11581 gtggacgacc agtttggcgg caacgattac gctgacggat tgggctagaa tcacgaggaa
    11641 gtgtttgtaa ttttaacact gctgcccaac ggtcttcatc agatgcattc acatcagaga
    11701 tgattttctt taattcttca cgttttgcgt agaatttatc agctaattta gcacgtttta
    11761 catcgcgtgc gatcattgat tgttttgcca cgataaccta ccttatttac ggaatgggaa
    11821 attgaaagca gctaataaag cttgaccttc ttcatcagtt ttcgctgagg tggtgatagt
    11881 aatatctaaa ccacgaacac gatctacttt atcgtagtcg atttcaggga aaatgatttg
    11941 ttcacgaaca cccatactgt aattaccacg accatcgaat gacttagcgt ttaaaccgcg
    12001 gaagtcacga atacgtggaa cagcgatagt aatcaatctt tcaaagaatt cccacatacg
    12061 ttcaccacgt agggttactt tgcaaccgat tggataccct tgacggattt taaagcctgc
    12121 aacagatttg cgagctttag ttactaaagg tttttgaccg ctgattgctg ctaaatccgc
    12181 tactgcgtta tctaacagtt ttttgtcggt caatgcttca cccacaccca tgttaagggt
    12241 aatcttttcg attcgtggga cttgcatgac agatgagtag ttgaattttg cttttaattc
    12301 attaactact gtatctctgt agtaatcatg cagtttcgcc atcacattac tccagttaat
    12361 taaattgttt tctcgttaga tttgaagaaa cgcacttttt tgccatcttc gaatctaaat
    12421 cctacacggt cagctttgtt ggtttcaggg ttgaagatcg caacgtttga aacatcgatt
    12481 gcagcttctt tcttcactaa accaccagct ttgcctaatg caggaactgg tttttcgtgt
    12541 ttagtgatga tgttgatacc ctcaacaaaa actttaccat ttggtaacac tttagttacc
    12601 ttaccacgtt tgcccttatc tttaccggta agaacaatta cttcatcgtt ttgacggatt
    12661 tttgcagcca ttacattctc cttatagtac ttctggagct aaagagatga ttttcataaa
    12721 cttctcagaa cgaagttcac gagtcaccgg tccaaaaata cgagtaccga ttggttgctc
    12781 agtgttattg tttaaaatta cacaagcatt gccatcgaaa cgaataactg cgccatctgg
    12841 gcgacgaaca cccttcttgg tgcgcacaac aactgctttt aacacatcac cttttttcac
    12901 tttaccgcgt ggaattgctt cttttacagt aactttaatg atatcgccaa tagcagcgta
    12961 acgacggtgc gatccaccta gaaccttgat acacattacg ctacgagccc ctgagttatc
    13021 agcaacatcc agcatagtct gttcttggat catattagtg ctccgttaaa ataaaaaaac
    13081 accctttcgg gacgaaccta tttatacaaa tataaatagg gtgcaaaata tactacaaaa
    13141 accactagtt
//
LOCUS       DANLXK010000071        12650 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.071, whole genome shotgun sequence.
ACCESSION   DANLXK010000071 DANLXK010000000
VERSION     DANLXK010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12650
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            184..402
                     /locus_tag="PXD88_001654"
                     /pseudo
     CDS             184..402
                     /locus_tag="PXD88_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014390712.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
     gene            complement(454..669)
                     /locus_tag="PXD88_001655"
     CDS             complement(454..669)
                     /locus_tag="PXD88_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281214.1"
                     /translation="MQTEKRGRGRPKSGLTLQELQAKSDAKRGVRLKSFKFHEDFIAQ
                     LEQLAEQHGISQTQVIVQAVEQFSKGA"
     gene            1214..1915
                     /locus_tag="PXD88_001656"
     CDS             1214..1915
                     /locus_tag="PXD88_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281215.1"
                     /translation="MSTQISTQTISFNNQALITFEQNGTHYTAMKPICENIGLTWHAQ
                     YERIKRDEILSQGILIIRIPTNGGDQQMICLPIEYLNGWLFGIDINRCKPEIRETLIK
                     YKKECYQALHDYWFKGKAERSQIAPIVEPKIPMELTKKEWLRFASMWYALYNSLEVLA
                     TLEKPLRAIGSPFGATAYTHATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTT
                     LRQYQPKGLGGLVRI"
     gene            2169..2345
                     /locus_tag="PXD88_001657"
     CDS             2169..2345
                     /locus_tag="PXD88_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281216.1"
                     /translation="MTEEDKEYLQTKIENEGFEYAFVSYSDFEEVQDEKFHGLRKAYL
                     KARSELAEYIDIED"
     gene            2433..2816
                     /locus_tag="PXD88_001658"
     CDS             2433..2816
                     /locus_tag="PXD88_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281217.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEEDQIRCPKTYAKL
                     REILEANEENVVRIGNVSISIGSTT"
     gene            2866..3087
                     /locus_tag="PXD88_001659"
     CDS             2866..3087
                     /locus_tag="PXD88_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL6281218.1"
                     /translation="MNIYTDFLSREEIEFITQCKQKNLIKKQLNIMGIPFKENANGFP
                     VVRRDYAQAKQRKPIATNDSDWVSNAFKA"
     gene            3109..4149
                     /locus_tag="PXD88_001660"
     CDS             3109..4149
                     /locus_tag="PXD88_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6281219.1"
                     /translation="MARPRKYENNGLPQNLLCRRRKRANGSIVEYYFYVLADGKERSL
                     GTNKHEAILEAAKLNFENSRKSPIVLFIDVAKRYELEVVPTKKAKNTRQSNLQAIHWL
                     CKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTALPSP
                     SQGVKKFPTKYREVYVEDYILDKIYEFADERMADIIETAYLLGQRPIDICNIHRSHIY
                     DGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKE
                     IRERAMKAYPELADEIAKVQMRDMRAKAATDISLMTTDEQAQKQLGHTSKRMTHHYIR
                     KDKILKPTDEIT"
     gene            complement(4308..4595)
                     /gene="rplY"
                     /locus_tag="PXD88_001661"
     CDS             complement(4308..4595)
                     /gene="rplY"
                     /locus_tag="PXD88_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL6281220.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(4747..6015)
                     /locus_tag="PXD88_001662"
     CDS             complement(4747..6015)
                     /locus_tag="PXD88_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL6281221.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
     gene            complement(6172..7083)
                     /locus_tag="PXD88_001663"
     CDS             complement(6172..7083)
                     /locus_tag="PXD88_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL6281222.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(7080..7799)
                     /gene="nfsA"
                     /locus_tag="PXD88_001664"
     CDS             complement(7080..7799)
                     /gene="nfsA"
                     /locus_tag="PXD88_001664"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL6281223.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(7811..8596)
                     /gene="mtgA"
                     /locus_tag="PXD88_001665"
     CDS             complement(7811..8596)
                     /gene="mtgA"
                     /locus_tag="PXD88_001665"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL6281224.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(8571..8891)
                     /gene="trpR"
                     /locus_tag="PXD88_001666"
     CDS             complement(8571..8891)
                     /gene="trpR"
                     /locus_tag="PXD88_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL6281225.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(8971..9612)
                     /gene="lolA"
                     /locus_tag="PXD88_001667"
     CDS             complement(8971..9612)
                     /gene="lolA"
                     /locus_tag="PXD88_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL6281226.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(9723..12581)
                     /gene="polA"
                     /locus_tag="PXD88_001668"
     CDS             complement(9723..12581)
                     /gene="polA"
                     /locus_tag="PXD88_001668"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL6281227.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
BASE COUNT         3785 a         2808 c         2377 g         3680 t
ORIGIN      
        1 ccttatattt ttttatgaga ttactacgaa agcgttttac tgtcagaaca aaaatttatt
       61 ttttcgatgc agatcgcaaa aatagatatt gaggcttgac accgccaaac ttcggattaa
      121 gataaccgca ctttcaagcc gtccaccaac ggcttttttt gtacctaaaa acggagaaac
      181 gaaatggcaa atagcgtaat gattgtacaa ggcgtggagg tcaaagtaac cgctcgtgat
      241 ggtgaggatt acatcagcct aactgatatg tgcaaagctt ttggagacag cgaccagctc
      301 attaaaaact ggcttcaaaa taaaaatacc attgaatttc ttcaagtttg ggaagagctg
      361 aataatccaa attttaattt ggtggaatta caccaaatta aatgcaacaa ctaattaaaa
      421 acatcgaaca gtgaagggta ggtttatagg ggcttacgcc ccttttgaaa actgctcaac
      481 cgcttgaacg attacctgtg tttgcgaaat gccgtgttgt tctgcaagct gttcaagttg
      541 agcaataaaa tcttcgtgga acttgaatga cttcaatcgc acaccacgct ttgcatcgct
      601 ttttgcttgt aattcttgaa gcgttaaacc tgatttaggg cgaccacgac ctcgtttctc
      661 tgtttgcatt gtcaattcct tgttgatttt taatacggaa cgttatatta tttaggaact
      721 gcctagcaga gatggcgttc tctgctagga cttttagctt tctaatctaa taagctggcg
      781 tgcttattaa gattaagatc actaggatta acaacttaag atacataatc cagttcctga
      841 tgtttgccgc tctcttcaag ggcggcttct tcattttcag accctttccg aaaacaagat
      901 tattttaata cataccaaat aaaacgcaag ctatttttta gtatttatta aaataatttt
      961 atttgacaac cgccaaactt taacttacta ttccgcccaa ggtgtcgaaa cctcatactc
     1021 taaggcggat agttcactaa tcgccactag gcgatttttt tatatccgta atcctgacta
     1081 tgtcgggagg gcgactaata caagaccgaa aggaaatacg tccagccctt accttagagt
     1141 gggttttcga acctcccgac gccactgtcg aaagtggctt gttttaaaca aatagactct
     1201 aaggattacg actatgtcaa ctcaaatttc tactcaaacc atttctttca acaaccaagc
     1261 cttaatcaca ttcgagcaaa acggcacaca ttacaccgca atgaaaccga tctgcgaaaa
     1321 tatcggcttg acttggcacg ctcaatacga acggatcaaa cgagatgaaa tcctttcgca
     1381 gggtattctt atcataagaa tacctacaaa cggtggcgat caacaaatga tctgcctccc
     1441 aattgaatac ctcaacggct ggctcttcgg cattgacatc aatcgctgca aacccgaaat
     1501 cagagaaacg ctcatcaaat acaaaaaaga gtgctaccaa gccctgcacg attactggtt
     1561 caagggcaaa gcggaacgtt cacaaatcgc cccgattgtc gaacctaaaa tcccaatgga
     1621 gctaaccaaa aaagaatggc tacgtttcgc ttcaatgtgg tacgccctct acaacagcct
     1681 tgaagtactt gctacgttag aaaaaccgtt gcgtgctatc ggttcgccgt ttggggcaac
     1741 cgcctacact cacgccaccg agtatcaaac cacgcttggc gtaatgaaac ggatacttga
     1801 accgatgtta gccgacttcg aggtcgatcc gtttgaagaa gctcactacc acaaagccct
     1861 aactacctta aggcaatacc agccgaaagg cttaggcggc ttagtccgaa tttaatttgc
     1921 aaaaaaatca cacaatccga ccgcttgtga aacatcaagc ggcggtttcc tgcacccaaa
     1981 attcaaggat taggcgatga aatacgcaaa aatcatactc tttttaaccg cctttgcagt
     2041 tgctgccgac tacttagagt tacacaacga ctgcgatggc aaaccatgca ctatcgcaca
     2101 gcgataatgc ttccccgacc ctgcccgtgc agtgtttatt tttatccact ctcaatagga
     2161 gaaacgaaat gacagaagaa gacaaagaat atcttcaaac taaaattgaa aacgaaggtt
     2221 ttgaatacgc tttcgtcagt tatagtgact ttgaagaagt ccaagatgaa aaattccacg
     2281 ggcttcgcaa ggcttattta aaagctcgaa gtgagttagc ggaatatatt gatattgaag
     2341 attaaccact gatgaactgt tcattgaaca aatgaacact tgacaaccaa ccgcttgtag
     2401 ctaactgcaa gcggttaatt tttggaggaa aaatgcacat agaagacaaa atcgcttggt
     2461 ggcttgccaa tggagagaca ggggtaagca gtaaaacaat ggctttttac cttggttacg
     2521 gaataagacc aaaaatagaa ggctacccac acgatgtatc ggatttcagg cgttgctttc
     2581 tgttgttgga gacagtccct tttttgcgaa ataggattga aaaaatggct gaacttggga
     2641 aagtttgggc tgcacttgca aaagaatggc acacattaga ggctctctac aacgaagagg
     2701 aagatcaaat aagatgcccc aaaacctatg ctaagttgag agaaatccta gaagccaacg
     2761 aagaaaatgt tgtccgcatc ggtaatgtga gcatttcgat aggttcaacg acttaacgat
     2821 tatttaacca aatccctcta aatgaggggt ttatttggag agaatatgaa catctacact
     2881 gacttccttt ctcgtgaaga gattgaattt attactcaat gcaagcagaa aaatctaatc
     2941 aaaaaacaac tcaacattat gggcattcca tttaaagaaa atgcaaatgg attccctgtt
     3001 gtccgccgtg attatgctca ggctaaacag cgtaaaccta ttgcaacgaa tgattctgac
     3061 tgggtatcaa atgcatttaa agcgtaaatt gagaagaagg aggcacttat ggcacgccct
     3121 cgaaaatatg aaaacaacgg attgccacaa aacctactct gccgccgcag aaaacgagca
     3181 aacggaagta tagttgaata ctacttttac gttcttgccg acggcaaaga aaggtctctc
     3241 ggtacaaaca aacacgaagc aattttagaa gcagccaagc taaattttga aaatagtaga
     3301 aaatccccaa ttgttttatt tattgatgtg gcaaaacgct atgaattgga agttgttcca
     3361 accaaaaaag ccaaaaacac tcgtcaatct aatttacagg ctattcattg gctatgtaaa
     3421 ttctttggta acccacctgc accgctcgaa aaaattgagc caaagcacat cagtcaatat
     3481 ttacaatgga gaaaagacac gccggctgtt gctaatattg aggtaggttt atttaacaca
     3541 atttggaata tggcaagaga atggggatac actgctcttc caagcccatc acaaggtgta
     3601 aaaaaattcc cgaccaaata tcgtgaagtt tatgtagagg attatatcct tgataaaatc
     3661 tatgaatttg cagatgaaag aatggcggat attatcgaaa cagcctattt gctgggacaa
     3721 agaccgattg atatttgtaa tatacaccgc tcacacatct atgacggtat attgcatatt
     3781 actcaacaga agacagggaa aaaagtgaga tttgaaatta gtggtcggct aaaagaaatt
     3841 ttagataaaa ggttgggata cgaatcagac tggattttta ccaataaatg ggggaaaaaa
     3901 ttaaaacggc gaagtttagg cgatcatttt aaagaaataa gggagagagc aatgaaagca
     3961 tatcctgaac ttgctgatga aatcgctaaa gtacaaatgc gtgatatgcg tgccaaagca
     4021 gccaccgata tttccctaat gacaaccgat gaacaagctc aaaaacaact tgggcataca
     4081 tcaaaaagaa tgacacatca ttacatcaga aaagacaaaa tcctcaaacc taccgatgaa
     4141 atcacctaaa aataaagccc ttttgccaaa tacaaaagag ccatttactc acctaaaatc
     4201 cgttccgaaa ctattttgta aataattgat tttattgacc taaaaaacta taaaatcgca
     4261 aaaagtttcg gaacagaaaa cagcgttaaa cccttgtaaa tcaaggatta agcacgtttg
     4321 aagtctaagt gaactaattt tggtttagtt gggtggcgtt gaattgcttg tacttttact
     4381 tgctcttctt tacctgcaac aacgatagtt aatacttcgt tatagaatga atcgtgaact
     4441 tgtgcgttgt tcactttatc gtgatctaaa atgattgata caggctctgc attaccaccg
     4501 tagatgattg caggaacttg accattgtga cgcaggcggc ggctcgcacc cttaccttgc
     4561 gcagaacgaa cttcagcttc aaatttgaat gacatagttt tattctctta aataaaatgg
     4621 ggaaatcccc gtgaatagaa aaaacagcag gcgacccagc tgtttccgaa aaaatatcgg
     4681 catatccgtc tcgatatgcc aactacgtat tttactgaag ttgcagaaaa atgcaatgta
     4741 aaaatattaa gcaaccagtt ttttcaactg ctctgcataa gcttcccaat ctgtaattgg
     4801 tcgagttgct acacctgatt gaattgctgc ttttgctaca ccaatcgaga cattcacgat
     4861 caaacgtgga tcaaatggcg ttggaataat atattccggg ccaaacgata attcgccata
     4921 agttgaaata acttcaaacg gcacaggttc tttagccaac tctgcaatcg catgggctgc
     4981 tgccattttc atttcttcat taatggtttt tgccccaaca tctaatgctc cacggaataa
     5041 gaacgggaaa caaagcacat tattcacttg gtttttaaag tctgaacgac cggtacatac
     5101 aatcgcatct ggacggacag ccttcgcttc agcaggtgta atttccggca cagggttcgc
     5161 taaagcaaga attaatagat cttttgccat tgttttaacc atttcttgcg ttaaagctcc
     5221 gccttttgaa caacctaaga aaacatctgc attcgcaacg gcatctgcca atgttctcca
     5281 accattatct tctattgcat agaattgttt ggtttcatcc atcttatcac cacgaccttg
     5341 gaaaataacg cccttagaat cgcacattgt gatattttct tttttcacac ctaatgaacg
     5401 gagtaagtta gtacacgcaa tcgctgatgc tccagcaccg tttaccacta aacgtacttc
     5461 tgaaattgct ttacctacca cttgtaatcc gttaatcacc gccgcaccgg taataattgc
     5521 cgtaccgtgt tgatcatcgt ggaacacagg gattcccata cgttcacgta atttttgctc
     5581 tacataaaaa cattcaggtg ctttaatatc ttccagatta ataccaccaa aagtcggttc
     5641 taacgatgca ataatctcca ctaatttctc cggatcagtt tcattaattt caatatcaaa
     5701 cacatcaatt ccggcaaatt tcttaaatag aacacctttg ccttccatca caggcttact
     5761 tgctaaagca ccaatattgc ctaagcctaa cactgctgta ccattagaaa ttactgcaac
     5821 taagttacct cgtgccgtat aacgataaga agctgaagga tctttttcaa tcgctaagca
     5881 aggctcagca accccaggag agtacgctaa agctaaatcg tgctgagtat ctaatgcttt
     5941 agtaggagta acggaaattt ttccggggat tgggaactcg tgaaaatcaa gcgcctgttg
     6001 ttttaaatcg ctcattttag aaaccttata atctataaaa ataaaagtaa tcaataatag
     6061 ccaaagagta gccattttac cctaaatttt ttcgcatttt tatggctttg ctctcatttt
     6121 ttatgatatt tacaaaaaat aatacaaaaa cgtccgcttg ttttactcaa atcaagcatt
     6181 cttcatctta ttgataaaat aagaaaccat ttcagaagct atatcaacat catttactct
     6241 ctctatgcct tcaaatcctg ggctggcatt gacttctaaa ataactacgc ctttctctgt
     6301 ccgcagaaaa tcaacgcctg caatatcaag ccctatcgtt ttagttgctt taattgctaa
     6361 cgcacgttcc atctgagtta attcaatcgg ttgagccgtt ccaccttgat gaatattggc
     6421 tctaaaatcg cctgttacgc tggttcggct catggcagca accacttcat tgccaatcac
     6481 aaacgcccga atatcttgcc ctttagcgtc gcccacaaat tgttggcata gataaggctc
     6541 atttacttgc ctaaaggtcg ctaacacggc ctcggcatta tttttgcctt caaatagcat
     6601 tacgccattc ccctgtgaac catttagcac ttttgaaata agtggaaaag caaattgatt
     6661 gagttgtgat ttcacagaaa ccaaatgccc tgcaaaattc gtattaggaa ccggcaaatt
     6721 gtgtttggct aatttttgta atgttcgcca tttgtctcgg gctaacgcaa atgccgctga
     6781 atgatttaga acaggaatac ctttcgcctc aaaatggcgt aacaccgaac agcccatttc
     6841 ggtactgcct gtgccaaaac ggggtaaaat gccgtcataa ttcggcaaca ataccggctc
     6901 cggacggttg ttatcatagc tctcgccagc ttgatagtag atcttaaatt cgccattttc
     6961 taacccgagt agcattctat tctggtctaa aatatccagc tcaatcccct ttgcctcaca
     7021 agcggctttt attcgacagc agctatataa acgaggctct cgacatagca ttagccactt
     7081 cattttttca gcaatccttt ctgattgaaa aacggcaaaa tatgcggacg aacaggctta
     7141 tccaatgttt tatgaatagc tgcttgccat tgttgtggct cgccgattct ggcttggtag
     7201 taagcggtca aattttcatt atattttgca aattcagtcc aatcaaaatc ctgatattga
     7261 ttgttataac aaaccaaact attcggcaaa cgaggtttta ttgccggctc ttgtgccgga
     7321 taccccaaac acatacccac cagtggaaca caatattccg gcaagttaag ggctttagaa
     7381 acccgctcaa tatcattacg caatgctcca atatacaccg ctcccagccc tagtgattcg
     7441 gcggctaaaa atacattctg ggccaaaata ccggtatcta ccgccccaat caacgacacc
     7501 tccgcccatt ccaactgcga ttcagggaca agttgtttgt gtttattaaa atcaatgcag
     7561 aacaccaaaa attcagcaca atctactaca tattgcatac ctgaaacggc ttttaatgtt
     7621 tctcgaatct gccgatcggt tacacgaatc accgtcacac attgcagatg atttgaactt
     7681 gaagccgctt tacctgcctc aattaagatt tggaaaatct cttcagaaat aggctgttcg
     7741 gtaaatttac gaatagaacg gtgagataaa atcgtctcaa gagtcggttt actttgcata
     7801 tttttctcgt ctaaagttta tctaaataat ttttgccatc aagcaaactt acttgtcgca
     7861 taatccacgc ttggcgtttt cgcatactcg ggccgggttt atctacccta aacaccaacg
     7921 ggttaggcaa agaggctgcc aatagtgcgg attcttgcaa ggttagctgt ttggctgatt
     7981 ttttgaaaaa atgctttgcg gctgcttcca ccccgaaaat gccgttacca aattccgcaa
     8041 tattgaggta cacctctaaa atccgatcct tactccacac attttcgact aacagggtta
     8101 aaggcacttc aatccctttg cgtaaccagc tttgcccgtg ccacaaaaac atatttttta
     8161 ccgtttgttg cgaaatggtt gaacctccac gcactttttt ggatttagca ttcagtttca
     8221 aggcagtttc tatcgcttgt aagtcaatgc caaaatggct ttcaaacttt tgatcttctg
     8281 aggcaatcac agccatttgc atttgccacg aaatctcatt caggctcacc cattcttttt
     8341 tgatcgggta agatttcccc tgaaccagat tctccacctt tttttgcacc atatacgcag
     8401 aataaggcac cggtaacacc gaaaaaatca gtatcggaat caggaaaaat gtgccaccaa
     8461 aggttaataa gcgactagaa ccaaaccaaa gccagcccag tttacttttt attttgcgag
     8521 gaataaaaaa aagccctatt ttcttcaaaa gagagcttaa aaatcgcttg ttacgctttg
     8581 ccattgactg ttccattaac cttgccgttc agccattgca gaaaatcttg gtcgagtgtt
     8641 ttaagcatat ttgaaccacg agtgatggtt gccgcactgg tatttaaatt ttgttggatt
     8701 tcccgttgcg aatcttcacc ttttagcaaa gcttgcacaa tttgtaaacg caagcctaat
     8761 gaacctcgct catcggcggt gagaaacatt gagaaaaacg gctcaagttt atcttccgca
     8821 accgcttgtt caagcagagc caaaaactgc gtccactcgt ttggatctcg ctggttatag
     8881 agtgttttca tactgtccct tgaagtaaaa acggtgacaa gcggtcagat ttttacaaaa
     8941 ttttgcagaa aaacgaccgc ttgctctcca ttattttttc gattttttac cgccacgttg
     9001 gtcgtctaac tctgcccctt tcggtacgct gaatttaaac aaatcgcttg agacaccgcc
     9061 ggtagtaata ttgcgtaaca catataagtt actttgcccg tcacgctcaa tggtactgaa
     9121 accttttaat aaaccgcttt ggtcaatccg cacatcaaac tgttttaaat tgcttttttt
     9181 cgattttggc ttaagcacga aagtatcagc actctggctg acatcatatt gatcccagtg
     9241 gcttttatca ccgctggtta ataagacgaa tggcgtatta ttaactgcat cttgcacggt
     9301 atttaccgta acttgtgaaa cgaaaggatc gtaaaaccat aaatctttgc cgtcagatac
     9361 aatcaaattt tcttgtggtg atttggtatc cattctaaat aagttcgggc gttttacttg
     9421 gaatttgcct ttgccttgct gaatttgttt acctttgcta gaacgcacgg tttggtcgaa
     9481 atccgcacta tattggctta cttgttccaa acggcgttgt aattctgcaa cagattgagc
     9541 atcagccaat gccacatttg ccaagccaaa taacgctaaa ccgaataccg attttttaaa
     9601 taatgttttc atttgttttc ctttttacca acaagaattt tcttgtttga caataaaatc
     9661 atcaaaagtt tcatattaat gaactgttac aacaatacaa taaaagtcgt gaattgtata
     9721 gtttaatgag cttcgtccca gttttcgcct acgccaactt cggcaatcag tggcactttg
     9781 aggctaatcg ctttttccat ttcggttttg attaattggc tgtaatggtc gattttatcg
     9841 gctttgactt caaacaccaa ttcatcgtga acctgcataa tcattttgat ttcatcatta
     9901 tcacgaatcg cattatcaat accaatcatc gccaccttaa taatatcggc agccgtgcct
     9961 tgcattgggg cgttgattgc cacccgttct gctgctttac gcaaaatagc attgccggat
    10021 ttaatatcag gcaagtacaa acggcgacca aatagggttt caacatagcc tttttcaact
    10081 gcaacttcac gaatatcggt cataaattgt tgaaccgccg ggtaacgttg gaagtagaga
    10141 tccatatatt tttgagcctc tgcacgccca atccctaatt ggtttgaaag cccaaatgac
    10201 gacattccgt aaatcagccc gaagttaatt gctttcgcac tgcggcgttg ttcggaggtg
    10261 acttcaccta actccacccc gaaaatttcg gcagcggtag cacggtgaat atctttgccc
    10321 tccgcaaagg cgttaatcat tccctcatca ttcgataaat gagccataat ccgtagctca
    10381 atttgtgaat agtcggcagc gacaatttta taaccttctc tcgcgacaaa agcttggcga
    10441 atccgtctgc cctcttcatt gcggatcgga atgttctgca aattcggatc gctggaagaa
    10501 aggcgtccgg ttgcggtgac tgcttgattg taagaggtat gcacccgccc tgtttttttg
    10561 ttaatcagtt gtggtaattt atcggtgtag gtagatttca acttacttaa cccacgatgc
    10621 tccattaata acttcggcac taaatgccct tgttgagcca actcgtctaa cacttcttcg
    10681 ttggttgagg gtgcaccttt tggagttttc ttcaacaccg gcaagcctaa tttttcaaac
    10741 aaaatctctt gtaattgttt agttgaggca agattgaagg tttgccctgc ttctgcgtgt
    10801 actaatgttt caacttcctc caaacgtttt tcaatttcag ccgattgggt caataatttt
    10861 ttcgggtcaa tcaacacgcc attgcgttca attcgagaaa gtacgcccac aagtggcatt
    10921 tcaatttcat cgaataactt caccaattca ggctcttgct gtagtttttc ccacaatact
    10981 tggtggagtt tcatcgtcac atcggcatct tctgccgcat attcagccgc ttttgctatc
    11041 tcgattttat cgaaggtcag ttgatttttc cccttaccag caagctcttc aaacggaatc
    11101 gttttatgcc ccaaataacg ggcggctaaa tcgtccatat tatgacgacc ggtgctgttt
    11161 tgggtgtaag attcaatcat cgtatcaaaa gcaacacctt gtagctcaat gccgtagttc
    11221 gcaaaaatgg ttaaatcata tttaatattc tgcccgatct ttttaatctc cgggttaagc
    11281 aaaatcggct tgagtttact taaacaagcg gtcaaattta gctgattttt taccaattca
    11341 tcggaagacg ggctttctga acgctcctca tcaccgaaca tatcggcttg ttgcggttgg
    11401 gctttttgct tatgcccaag cggaatatag cacgcctcgc cattttccag tgcaaaggaa
    11461 ataccgacca aattagccga cattgcgtca aggctgtcgg tttcggtatc caccgcaatc
    11521 aaacgagctg cggtgagttt ttcgatccag gctgataatt tctgttcagt atcaacggtc
    11581 tcatatttgc tacgatcgat ctcgaccaca tttgcaacat tttcctcatt tctgaccgct
    11641 tgtgttactt ggtaattatt cggtactttt tcagccgaag tttgagtgac cggattggca
    11701 ttttgattca cttcgttcag ccagcgttta aattcataat gctcaaataa ttgagcaagc
    11761 tcagcacggt cttgcggctg tgttaaaagt tgatcgtgag taacatcaag ttccacatcg
    11821 gttttgatgg tagcaagcaa ataggataaa tcggcattcg ctttttccgc ttccaatttt
    11881 ggggcgaaat tttttgcccc acggaaagaa agggtggcaa tttgatccaa attagcataa
    11941 atctgttcaa gtgaaccaat gccttgcaat aaagctaatg cggtcttttc ccccacacct
    12001 tttacgcccg gaatgttatc ggcggaatcg cccattaatg ccagaaagtc gataatcaac
    12061 tcaggcggaa tgccatattt ttcaatcacg ccttcacgat ctaacaaagt attgttcatc
    12121 gtgttaatca acataatgtg atcgttcacc aattgtgcca tatctttatc gccggtgctg
    12181 atcaacacat ctttgccgtc tttagcggct tgcacagcaa gcgtgccgat cacatcatca
    12241 gcttccacac cttcaatcga aatcagtgga atgcctaagg ctttgataat gcgatgcaaa
    12301 ggctcaattt gagggcgtaa atcatcgggc attggtgggc ggtgcgattt atattgctta
    12361 aacaactcat cacggaaggt tttccctttg gcatcaaaca ccacagcaat atggcttgga
    12421 ttcacttgtg aaatcaggct ttttaacata ttcagcacgc catacattgc ccctgtcggt
    12481 tcgcctaagc gattagtgag cggagggaaa gcgtgaaatg ctcgatataa ataggaagaa
    12541 ccatccacca ataccagtgg attttttgcg atagttgcca taaaaatctc tttataatca
    12601 aataaatatt ggcgttatta tacaagaata tttaagaatt gagtgtgtat
//
LOCUS       DANLXK010000072        12570 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.072, whole genome shotgun sequence.
ACCESSION   DANLXK010000072 DANLXK010000000
VERSION     DANLXK010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12570
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..754
                     /locus_tag="PXD88_001669"
     CDS             <1..754
                     /locus_tag="PXD88_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6281228.1"
                     /translation="SHIYSYPFDVKVVRNNPNVGAAQSRNVGATNATQEWLLFLDDDD
                     RFMPEKCERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKHKSELTKENILKAN
                     KIGGMPMIGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEPLYVDEALTYCTFH
                     TKRSSVSTDTTNTEKAIEYIQQTYIKTPEANNFKLNSLYILSYPHVMNLSRKAAGYYF
                     EMFKQTKNIKQLIIALVIFISPKLAINLKRFM"
     gene            754..1554
                     /locus_tag="PXD88_001670"
     CDS             754..1554
                     /locus_tag="PXD88_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6281229.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(1591..2097)
                     /gene="msrA"
                     /locus_tag="PXD88_001671"
     CDS             complement(1591..2097)
                     /gene="msrA"
                     /locus_tag="PXD88_001671"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL6281230.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
     gene            2278..3540
                     /locus_tag="PXD88_001672"
     CDS             2278..3540
                     /locus_tag="PXD88_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL6281231.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIIFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            3685..4461
                     /gene="deoC"
                     /locus_tag="PXD88_001673"
     CDS             3685..4461
                     /gene="deoC"
                     /locus_tag="PXD88_001673"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL6281232.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            4482..5201
                     /gene="deoD"
                     /locus_tag="PXD88_001674"
     CDS             4482..5201
                     /gene="deoD"
                     /locus_tag="PXD88_001674"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL6281233.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(5277..6128)
                     /locus_tag="PXD88_001675"
     CDS             complement(5277..6128)
                     /locus_tag="PXD88_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL6281234.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            6243..6674
                     /locus_tag="PXD88_001676"
     CDS             6243..6674
                     /locus_tag="PXD88_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL6281235.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            6691..7371
                     /locus_tag="PXD88_001677"
     CDS             6691..7371
                     /locus_tag="PXD88_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL6281236.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            7435..8559
                     /locus_tag="PXD88_001678"
     CDS             7435..8559
                     /locus_tag="PXD88_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL6281237.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            8643..9260
                     /locus_tag="PXD88_001679"
     CDS             8643..9260
                     /locus_tag="PXD88_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL6281238.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMNRF"
     gene            9403..10344
                     /gene="argC"
                     /locus_tag="PXD88_001680"
     CDS             9403..10344
                     /gene="argC"
                     /locus_tag="PXD88_001680"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL6281239.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            10436..11290
                     /gene="argB"
                     /locus_tag="PXD88_001681"
     CDS             10436..11290
                     /gene="argB"
                     /locus_tag="PXD88_001681"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL6281240.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            11303..12487
                     /locus_tag="PXD88_001682"
     CDS             11303..12487
                     /locus_tag="PXD88_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL6281241.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
BASE COUNT         3610 a         2465 c         2874 g         3621 t
ORIGIN      
        1 atctcatatt tatagctatc catttgatgt gaaagtggtg cgaaataacc caaatgttgg
       61 ggcggcacaa agccgaaatg taggggcaac taatgccaca caagaatggc tactgttttt
      121 agatgatgat gaccgcttta tgcctgaaaa atgcgaacgt ttagcggcag agattgcgaa
      181 caatccaact gccaattttg tgtaccaccc ggcaaaatgt gaaatggtaa atgagggttt
      241 tacttatgtc accaagccgt ttaaacataa aagtgagcta actaaagaaa acattctaaa
      301 agcgaataaa attggcggaa tgccgatgat tggcttgaaa aaatcactct tttgtaaaat
      361 tggtggatta tctgaccgct tgcgatcact tgaagattat gatttcttac tgaaattatt
      421 ggaagaaccg agttttgagc cattgtatgt ggacgaagcc ttgacctatt gtactttcca
      481 taccaaacgc tccagtgttt caaccgatac cactaataca gaaaaggcta ttgagtatat
      541 tcaacaaacg tatatcaaaa cacctgaggc gaataatttt aagctcaatt cgctttatat
      601 tttaagttat ccacacgtaa tgaatttatc ccgcaaggca gccggttatt attttgagat
      661 gtttaaacag actaaaaata tcaaacaact gattattgcg ttggttattt ttatttcgcc
      721 gaagttggcg attaatttga aaaggtttat gtaatgaaat tttccgtttt aatgtcgtta
      781 tacattaaag agcaaccgca atatttaaga gaatgttttg aaagcttgaa agtacaaact
      841 gtgcaggctg atgaaatcgt tgtttgtttt gatggtgcag ttacgcctga attagaggcg
      901 attgtagaag aatatagtgc aattttgccg attaatgcgg tgaaattccc acaaaatcga
      961 ggtttaggta aaacgctaaa tgatgggcta acctattgta agaatgaatg ggttttcaga
     1021 atggatacag acgatatttg tatgccggaa cgtttcgaga aacaagtggc atttattgaa
     1081 cagaatcctg aaaccgtgat ttttggcggc caaattgctg aatttgggca agatattcac
     1141 gatcttgtcg cttaccgcaa tgtaccaacc acggtggagg aaatcgtcag attcactcgc
     1201 ttgcgttgcc cgtttaacca tatgacggtt gcttatcaga aatccaaagt gttggaagtc
     1261 ggtggctatc aagatctgca agaagattac tatttatgga tcaaactcat tgctcaattt
     1321 aaacaagtgg caaacttgcc ggatttatta gtgtatgccc gagtcggtaa cggaatggtt
     1381 ggcagacgcc gtggaatggc ccaagcagag gcagaatggc gtttatataa attaaaaaac
     1441 cgctgccaga ttcacgatcc gatttcaggt tttgggattt tcataatgcg tgcaattcct
     1501 cgtttattac cggtttcagc actgaaaaaa gtgtacggtt tgctcagaaa ataaagctaa
     1561 aaaaaccaca gattgctctg tggttttttg ttattgattc ttcaaaatct cattcattaa
     1621 ttgaatatca atatggcagt agccgttcgg gttttttact aaatattctt ggtggtactc
     1681 ttcggcaggg aaatattgct ctaacatttg gttttccact gccagcggct gatcaaattg
     1741 ggtttgtaat tgtgcaagtg cggcggttac caccggttcg tcttgtgggt cggtataata
     1801 aataccggtg cggtattgaa taccgatgtc gccaccttgt ttgttaatgc tcaccgggtc
     1861 tattacttta aagaagtaat ctagtaattt tgccaagcta atttgattgg catcataagt
     1921 cacttttacc acttcagcgt gtccgctacc ggcacacacc tcttgatagc ttgggttatc
     1981 ggtattaccg ttggcatagc ctgattgtgc cttaatgaca cctttaatcc gttgcataaa
     2041 agattccacg ccccagaaac agccaccggc taagtaaatt tcacgaatat tttgcatatt
     2101 acctctctat aattgtaaat ttttcgataa atttgactgc ttgtgatgaa taataaaata
     2161 ccataattta gtttttgtca aattttgtct tgaatgatga taatttcaca agattttttg
     2221 cctaaaaata ggtatagtat cgtcaccttt tttaatcaat ttataattag aggttctatg
     2281 ggtactctta acagcttttt aggcattatt gttttactat tcattgcatt tttattttcg
     2341 agcaataaac gtgcaataaa cgtgcgtacc gtattaggcg cattagcatt gcaggtagct
     2401 attggtgcat tggtgcttta tgtgccggca gggcgtgatg ccttgaatgc gatggcaaca
     2461 ggtgtgtcaa aagtgatttc ttacggtaat gaagggattt catttttatt cggtggctta
     2521 gtcagcgaca aaatgtttga agtatttggc ggcggcggct ttgtgttcgc tttccgtgta
     2581 cttccggtga ttattttctt ctctgcactc atttctttgc tttactacat tggagtgatg
     2641 caatgggtaa tccgtatttt aggtggttta ttacaaaaag cattaggtac atctaaagcg
     2701 gaatctatgt ctgcggcagc taatattttc gttggccaaa ctgaagctcc attggtagta
     2761 aaaccttata tcagcaaaat gacagaatct gaactctttg cgattatggc agggggctta
     2821 gcttctattg caggttctgt tatggctggt tacgcaggaa tgggcgtacc attaacgtac
     2881 ttaatcgcag cctcctttat ggcggctccg gcagggttat tattcgccaa aattatggtg
     2941 ccacaaaccg aaaaattccg tgatgaacta gaagcggtag atttagaaaa accggcaaat
     3001 attcttgatg cagcagcttc aggtgcttct tcaggtatgc aactggcatt aaacgtaggg
     3061 gcaatgttaa ttgcattcgt ggcgttaatt gcattagtga atggtatttt aggaggtatt
     3121 ggcggctggt tcggttatga taccttaaac ttaggtcaaa ttttcggctg ggtatttaaa
     3181 ccgcttgcgt gggtaatcgg tgtgccttgg gaagaagcag aaattgcggg gcagatgatc
     3241 ggcttaaaat tagcggtaaa tgaattcgtg ggttatttag agtttgctaa atacttagct
     3301 cctgagtcaa ccgtacattt aacggataaa actgttgcga ttattacctt tgcactttgt
     3361 ggctttgcga acttcagctc gattgcgatt ttaatcggtg gtatcggggc aatggctcca
     3421 agccgtcgtg gtgatattgc ccgacttggg attaaagccg tcattgctgg ctcacttgcc
     3481 aacttaatga gtgcaaccat tgccggcttg tttatcggct tgggtggagc agttctctaa
     3541 tccagtttgt ataaaaccac tagaaatagt ggttttatct ttttttatct gacgtaaacg
     3601 gttgcttttg gtttgtctat ttacaagcgg tcagattttt ataaaatttt accaaccacc
     3661 acgcatttaa taaaaggaga cactatgaat ttaaaaaaat ccgctgagat tgctctttcg
     3721 ttgatggatc tcaccacatt aaatgacaat gatactgatg agaaagtcat cgcattatgc
     3781 caacaagcga acaccaagtt tggcacaccg gcagcaattt gcatttatcc acgttttatc
     3841 ccgattgccc gcaaagcatt gaaacagcaa ggtatcgagc aagtaaaaat tgcgacagtc
     3901 acgaatttcc ctcacggtaa tgatgatatt gaaattgcgg tagctgagac caaagccgca
     3961 gttgcttatg gggcagatga ggtagatgtg gtattccctt ataaagcatt aattgcaggt
     4021 aatgagcaaa taggtttcga cttggtaaaa caatgcaaag cagtttgtgc tgccaataat
     4081 gtgttgctta aagtgattat tgaaaccggc gagttaaaat cagcagagct tattcgcaaa
     4141 gcaagcgaaa tttcgattca agcaggggct gattttatta aaacctcaac cggcaaggtg
     4201 gcagtgaatg ctacccttga atctgcccgc attatgcttg aaaccattcg tgatttaggt
     4261 gtggcagacc gtgttggctt taaagctgca ggtggggtaa aaacctcgga agaagccgcc
     4321 caatatcttg cacttgcgga atctatttta ggcaatgact gggtgagtgc atcacatttt
     4381 cgcttcggtg catcaagttt attagctaat ttattagcaa cattgaatga tgaacagcag
     4441 caagctgttc aaggttatta attaataaag aggaacataa aatggctact ccacacatta
     4501 acgcacctga aggtgctttc gctgacgttg taattatgcc gggcgatccg cttcgtgcta
     4561 aatatatcgc tgaaaccttt ttagaagatg caaaagaagt gaccaatgtt cgcaatatgt
     4621 taggctacac cggcacttat aaaggtcgcc gcatttcagt aatggggcac ggtatgggga
     4681 ttccatcttg ctcgatttac gctaaagaat taattactga atatggcgtg aagaaaatta
     4741 tccgtgtcgg ctcgtgcggt gcggtacgta atgatgtcaa agtgcgtgat attgtcatcg
     4801 gtgttggggc ttgtaccgat tctaaagtaa accgtattcg cttccgtgat aacgattttg
     4861 cggcgattgc tgattttgat atgacattag ctgctcacca agcagctaaa gcgaaaggca
     4921 ttgaagctcg tttcggtaat ttattctcag ccgatttatt ctactcacct gatgtcgaaa
     4981 tgtttgatgt aatggaaaaa tacggcattt taggcgtaga aatggaagca gcaggcattt
     5041 atgcggtagc ggcagagtat ggagcaaaag cattagcaat ttgcaccgtt tcagaccata
     5101 tccgcaccgg tgagcaaact acctctgaag aacgtcaatt aacctttaat ggtatgattg
     5161 aaattgcgtt agagtcagta ttaattggcg ataagcagta atttctaacc tgacaagcgg
     5221 tgaaattttg caaaaaattt gcagaatttg accgcttgtt atttttgatt cttcctttat
     5281 cttcctttcg ggctttcgcc aaactgcctt ttatattctc gactaaactg gcttgggctt
     5341 tcatagccga cttgataggc ggtttcactc acgcttactc ctgcttgtag tttttccctt
     5401 gccgcattta gtcttaacga tttctgatat tgcagtggtg tcattgaagt tacgctttta
     5461 aaatgagcgt aaaaccccgc cacgctcatt cctacctctt cagccagtgc tgacatattt
     5521 agtgtatcgg caaattttct ttctaagatt tttgttgcat tggcaatttt agcaatattg
     5581 ccatcttgag agagtagaga gcgtatatag ccaccttgct cagattgtaa taaatagaaa
     5641 tagagttcgt ttaatatcaa tggtgcaaga aaatgaatat gatttggaga attaagcaaa
     5701 tttagtaagc gtaacaaaca gtctttaatt tcattctcca gctcccattt agtgcgttga
     5761 ttaatgtttt cacttatttt ctgtggggga agctgcgtga taattttggc aataagatca
     5821 aaatccaagc gtagtgaaat cgcaagataa ggctgatttt ctgcaactga taaggtttgg
     5881 gtaacaatcg gcaaattcac agggcaaaac atcatttcct gattaccgaa gacttggcaa
     5941 tgtccattgg tacagatttg ccgctcgcct aataatacta cacataaact tgggtcttgg
     6001 atataaccgt taaatctaat agaacgatcg gcagcgtgaa cggttagccc tgaaatggga
     6061 gtagcccaaa gttcattttt cggagcgagg gcaaaaatag attcaataat agctcgatga
     6121 gtttgcataa taatctcact tttagaaaat taggcatatt ttatagaaaa tcaggcaaga
     6181 cgacaaatag caaaaagcgg ataatatccc caatcaaata aagcatttaa taggagcaaa
     6241 atatgaaaat tttttatcac acatcagcaa ctgcaaccgg tggtcgtgac ggcagaaccc
     6301 aagtggatga cggttctatc ggttttgatt tagtcggttt ccaaaatgaa agtggcaaag
     6361 taggcactaa tccggaacaa ttattcgcaa tgggctatgc tgcctgcttt gacagtgcaa
     6421 tgaatcacgt tgccccaacc ttaggcatta agccaaccaa atccagtacc actgttgcag
     6481 ttgggattgg tcaaaaagct gatggtgctt tcggcttaga tttagatatt accattactg
     6541 tggaaggcat tagtgcggaa gaagcgaaaa ctttaattag caaggcacac gaagtttgcc
     6601 catattcaaa tgcaacccgt ggtaatgtag atgtgcgttt acacgttaaa gtcgtgagtg
     6661 aatttgactt ataaaaaata aataggggaa atgaaaatgt tagattttga aaccacggta
     6721 aaaacacgac aatcaatccg caagttttta ccgcttccga tgacggaaac tgaaatcaaa
     6781 caaattcttg ccgatgcaca aaatgcccct tcggcttgta atacacagcc gtggttagta
     6841 cacgttgcct ctggtgaaac gctagcacgc ttaaaagctc gttttaaaaa gacttttgaa
     6901 gcgggcatta atgatgcgga ttttgagttc aatcaaacga aatttaccgg tgactacgaa
     6961 ccacgttggc gtaaccaata cagccacgtt tttaccacca gctatggcat tccccgtgaa
     7021 gataaagccg gtcgccaagt ggtgtatgat gacaatattg tcggttatgg tgcgccacat
     7081 atggcattcc tatttatgcc aagcattgac ggacacgatg tcaatattgc cagcgatgtt
     7141 ggtatgtatt cgcaaacttt cttgctctca ctcaccgctc gtggttttgg cggcattccg
     7201 cagcttgccc ttgcgatgtt tgctaaagat gtgcgtgaag agttaggcat tcctgaacat
     7261 tacaagctcc tccacgccat ttctttcgga cacccagatt gggacgctat gcagaacaaa
     7321 caccatttag ggcgtgtgcc ggtggaagag agtgcgacct tacattggta ataaacaagc
     7381 ggttgatttt tcgcaaaaat ttgcgaaatc aaccgtattt tttaggagaa tacgatgata
     7441 aatttattta ccccttatac tctgaataac gatgtagaaa ttaaaaaccg ccttgtagtt
     7501 gccccaatga cccattccgc ctccaacgat gacggcacaa ttagcgagca agaacgccat
     7561 ttcttgcata atcgtgcagc agatatgggc ttatttatca ccgcagcaac cggggtaatg
     7621 cgtaacggca aagcgtttta cggtcagccg gaagctcttg atgaacgcta tttggcaagc
     7681 ctgacagaaa ctgccaatat cttgaaaaat caaggcacca aagcgatttt gcaaattttc
     7741 cacggtgggg cacaagctat tcctgccttg cttgacgggg cgaatgcagt tgcgccgtcc
     7801 gagcacgcca acggtgctaa agccctaacg gcggacgaag tgaagcaaat gatccaagct
     7861 ttcgctaatg ccaccgattt agctattcaa gccggttttg atggtgtgga aattcacggg
     7921 gcgaacggct atttaattca acaatttttc tctactgaat ttaatcaacg cactgatgaa
     7981 tggggcggta gccttgaaaa acgcttgcgt ttcccgttag cggtggttga ggcagcggtc
     8041 agcgtgcgtg aaaaacacca acgccctgat tttattatcg gctaccgttt ctcaccggaa
     8101 gagccgggcg aacacggctt aaccatgacc gatacctacg ccctgattga tgctttgtgc
     8161 gaaaagccgt tgcaatactt gcacatttca ctctgggatt tcggcaaaaa agcccgccgt
     8221 ggtgcagata ccaacttcac ccgtatgcaa ctggtacacc aacacatcaa cgggcgttta
     8281 ccgctgatcg gcgtgggtaa cttattaacc ggtgaacaga tccgtaaagc ttatgcaaca
     8341 ggctgggcag aatttatcgc cttaggtaaa gcggtaatgc tcaacccgaa cgtggcgacc
     8401 ttgttgaaag ataatcgaga cagtgagatt gtcagcgaac tcgacccgca acaagccgac
     8461 cactacggca ttcccgatag actatggggc tactgcgtgc aaggtggtgc ttggttaccg
     8521 ccgcttaaag ggcaaaacgg gcaaccaatg gatatttaat cattacagac aagcggtcat
     8581 ttttttgtaa aaatttgcaa ttaagtgacc gcattttttc aattatctga aggagaaaaa
     8641 ttatgattac gttacattac ctgaacagtt cctgctctca ccgcatcgtt tggttgttgg
     8701 aagccttagg cttggattac gagctaaaaa tctaccatcg tgaagagagc ggttttgcac
     8761 ctatggaggt aaaagccttg cacccacttg gcaaagcccc tgtgttgcaa gatggcgatt
     8821 tggtgcttgc cgaaggcaat gcgattatcc agcatctgat tgcccgttac gccgaaggga
     8881 aatttgagcc gactcgtggt agcgaagcct attcaatgta tcactactgg ttgtcgattt
     8941 ctgcttcatt attctcggca aaccttgtga caatgttggc taatcgctct gatctcggag
     9001 cttttggcga ctacgcaaaa gcgcagactc cgctgtattt taaccatatt gagcaaacac
     9061 tttcagataa aaaatggatt gtgggtgatg aactaaccgg tgcggatttt tctctctgtt
     9121 tcccactaca atgggggcgt aattttgttg aaatggcaaa ttacccgaat attgcacgct
     9181 atttagaaca ggtggaaaat caccctgctt accaaaaagc gaatcaaaaa gccctgaagc
     9241 ttgatatgaa tagattttaa tactcttttt aatccctaac attttgttag ggatttttga
     9301 atataaaatc aattaatgtg aataattatt caaaaataaa cttgagttta gccttaaata
     9361 gccttagact accgagcaga aaaagtcaaa gaaggatttt caatgagcaa atacaagatt
     9421 tttgttgatg gggcagtagg aacaaccggg ctacgcattc acgaacgttt aagccaagcg
     9481 gacgatattg aattattaac cttgcccgaa gagcagcgga aagatttgaa cgcccgtgtg
     9541 gcaaaagtcg cagaggcgga tttaactttc ctctgtttgc cggatgaagc ctcaaaagaa
     9601 ttagtagcaa atgcaccgga aaatacccga atttgcgata cttcaaccgc tcatcgggtc
     9661 aatcctaatt gggtttatgg ttttccggaa ttgagcggac aacgtgaaaa aatccaaaat
     9721 gccaagcgtg ttgcggtgcc gggttgccat gccacgggct atattgcgtt ggttcgtcca
     9781 ctggtggaaa aagggattct gcccgccgat taccctttaa gttgtcattc cttaaccggc
     9841 tattcaggcg gtggcaaagc gatgattgct gactatgaaa atgaaaacag cccaaatgct
     9901 ttcaatgccc ctcgtgttta cggtttaact ctccaacaca aacatttgcc tgaaatgcag
     9961 gcagttaccc aaatgcaaaa cccaccgatt ttcacccctg tggttgctga ttattacagc
    10021 ggaatgttag tcactgtgcc attgcagatc ttcgccttac aagcggtcaa atccggcgaa
    10081 gaaattgcaa atttgctcgc cgattactac caaaccagcc gactaattca cgttcaccct
    10141 ttccaatctc tacccgaaga cggaatgctt gccgcgaatg cttatgcagg taaagacagc
    10201 ttagagattt ttatttacgg caacagcacc caacttttac ttgctgcccg ttttgacaat
    10261 ttaggcaaag gggcatcagg tgccgcagtg cagtgtatga atattatgtt gggaagagat
    10321 gaggttgagg ggttagagct ttaaatataa atgtagggac aggtcctgtg cctgtccgat
    10381 aatcatcgcc catattcgga cgggcacagg acccgtccct acaagagaaa gaaatatgca
    10441 acaacaagaa atcaatcaat ttgcaaattt attagaaaaa tccaccgctt gtttggtgaa
    10501 atggcagggt aaaatcattg tggtgaaata tggcggtaac gcaatgatta atgaggaact
    10561 gaaaaaatca gtgatggcag atctgctgtt acttcatcgt ttaggcgtaa aagtggtact
    10621 ggtacacggt ggcgggctgg agatttcaca aggcgtgaaa ttattgggta aagaaccgca
    10681 atttatcaac gggttgcgtg ttaccgatag cgatacgatt aacgtggttt tgcaaatgtt
    10741 ggcaggcaaa gttaataaaa gccttgtcgc cttattaaaa gggaaaggca ttgggctgtg
    10801 tggtattgat ggggcgatgt tgcaatgcaa aaaattagag gcagaggtgg attacggctt
    10861 tgtgggcgat attgtgaaag tcgatccaac tgtgattgaa attgctctta atgcgggctt
    10921 gattccggtt gtttccacgg tgggcgttga tgaaaacggg caggcttata acattaatgc
    10981 agacaccgct gccagcgaga ttgcgattgc gttacaagcg gaaaaattgg tctcgatgac
    11041 cgatattgca ggtttattgc gagatcgctt tgatgaaagc accttaattc cggaagtgga
    11101 agtaagcgaa gtgcagtccc tgattgagca aggcattatt gccggtggga tgatccccaa
    11161 aattgcgtgc tgtaccgatt tcatcagagc tggtggctct gaggcaaata ttattgacgg
    11221 gcgaatcgac cacgccattt tggtagaaat gttcggtggc aaaaacggca cacggtttta
    11281 taaaaaataa caggaaagtg aaatgacaag cagtaatacg attaagcaat tagataagga
    11341 ttatatcgcc caaacctatg gcagatttga ccttgcactg tcgcacggaa aaggctgtga
    11401 agtgtgggat tttgagggca ataagtatct tgattttacc agtggcattg gggtaaatag
    11461 tttaggctgg gcggatgagg attggctaca agctgttacc acacaagccg gcaaattagc
    11521 tcacacctca aacctgtttt ttaccgaacc ggcaagccaa ttagcccaaa aattagtggc
    11581 tgcaagcggt ctaaaacggg catttttttg caattcaggg gcagaggcaa atgaaggagc
    11641 aattaaaacc gcccgcaaat atagtttcga caaatacggt tccggtcgtt caacggtttt
    11701 aaccctcgtg aactcttttc acggacgaac catttcaacc ctcgcatcca ctgggcaaga
    11761 ggtattccac aagcattttt tcccctttac agagggcttt gaatatttac ctgtaaatgg
    11821 cattgaggca ctgaaagctc gcttggaaac tgagaacgtt tgcgggattt tgctggaggt
    11881 ggtgcagggc gagggcggtg tttgcccatt agaggcggat tatctgcacg ccgtgcaaag
    11941 cctgtgccaa gaaaaagata ttttatttat gattgatgag gtgcaaaccg gcattgggcg
    12001 aacgggcaca ctttttgctt atcaacaatt tgatttaact cctggtttag tcacgctcgc
    12061 taaaggcttg ggcggcggct tgccgattgg tgctttcctg ttaggcgaaa aagtggaaat
    12121 gacattaggc aaaagcgacc acggctcaac ctttggtggc aatcctgttt cctgtgctgc
    12181 tgcaaatgta gtaatcgata aaataaacgc cgaatttctc gcccaagtgc aacaaaaagg
    12241 gcagttgtta cagcaacgct tagcgagctt accaaaagtt aaatccgttt caggcttagg
    12301 tttaatgctc ggcgtagaat ttgaggaagg cattttagcc gctgatattg ttgcaaaatg
    12361 tatcaacaaa ggtgtgctgt ttttaaccgc taaaagcaag ttaaggctac tcccaccgct
    12421 gatgatctct gaacaacaga tagaacaagg aatcagagtg ttagaggatg tcttgaaaga
    12481 ttcttgagtt attataaaca gtaggaatat cttcttactg ttttttatta ctattatata
    12541 gtagcctact ttaatctgtt gtcactttat
//
LOCUS       DANLXK010000073        12433 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.073, whole genome shotgun sequence.
ACCESSION   DANLXK010000073 DANLXK010000000
VERSION     DANLXK010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12433
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..677
                     /gene="fkpA"
                     /locus_tag="PXD88_001683"
     CDS             <1..677
                     /gene="fkpA"
                     /locus_tag="PXD88_001683"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6281242.1"
                     /translation="STNVMAEEKADPKFVDDSSYAVGVLMGKNINGVIESQKDIFTYN
                     QDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKINEEKTKATVAAGDKFRA
                     DYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGTLTDGTVFDSSYDRGEPI
                     EFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGKIPANSTLKFEIELLDFK
                     AADAKK"
     gene            774..1430
                     /locus_tag="PXD88_001684"
     CDS             774..1430
                     /locus_tag="PXD88_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6281243.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            1430..1807
                     /gene="tusD"
                     /locus_tag="PXD88_001685"
     CDS             1430..1807
                     /gene="tusD"
                     /locus_tag="PXD88_001685"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL6281244.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            1809..2180
                     /gene="tusC"
                     /locus_tag="PXD88_001686"
     CDS             1809..2180
                     /gene="tusC"
                     /locus_tag="PXD88_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL6281245.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            2190..2465
                     /gene="tusB"
                     /locus_tag="PXD88_001687"
     CDS             2190..2465
                     /gene="tusB"
                     /locus_tag="PXD88_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL6281246.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            2581..3480
                     /locus_tag="PXD88_001688"
     CDS             2581..3480
                     /locus_tag="PXD88_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281247.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            3830..7855
                     /gene="rpoB"
                     /locus_tag="PXD88_001689"
     CDS             3830..7855
                     /gene="rpoB"
                     /locus_tag="PXD88_001689"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL6281248.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            8118..12401
                     /gene="rpoC"
                     /locus_tag="PXD88_001690"
     CDS             8118..12401
                     /gene="rpoC"
                     /locus_tag="PXD88_001690"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL6281249.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT         3748 a         2411 c         2872 g         3402 t
ORIGIN      
        1 ttagtacaaa tgtgatggca gaagaaaaag cagatcctaa atttgtggat gattcctctt
       61 atgccgtggg tgtattaatg ggtaaaaata ttaatggtgt gattgagtca caaaaggata
      121 tttttaccta taaccaggat aaaatcttag ccggtgttca ggacacctta aagaaaaccg
      181 gtaaattaac cgatgaagat ttgcaaaagc agttaaaatc gttagatgcc tatttatctg
      241 cgaaagaagc aaagattaac gaagaaaaaa ccaaagcaac ggtagctgca ggcgataaat
      301 tccgtgctga ttataaaaaa cagtctggcg taaaagaaac ggcttcaggc ctgttatata
      361 aaattgaaaa agcaggtgaa ggcaattcac caaaagcgga agatactgtg aaggtgcatt
      421 acaaaggcac tttgactgat ggcacggtat ttgacagctc ttacgaccgt ggtgagccga
      481 ttgaatttca gttaaatcaa ttaattccgg gttggattga agcgattcct atgttgaaaa
      541 aaggcggtaa gatggaaatt gtagtgccac ctgcattagc ttatggtgat cgtgccgcag
      601 gcaaaattcc agcaaattca accttgaaat ttgaaattga attattagat tttaaagcag
      661 cagatgctaa gaaataattc gttattcctt aattattgaa gatacgtaag cggttagatt
      721 tattataata tttgcaaaaa atgtgataaa actaaccgct tgtaatttgt attatgacca
      781 aaaaatttac gcctttttct gacgaagatc acgccattct tgcttcttac tttccgatgg
      841 tagatgggat tgcggcactg attggtgagc attgcgaaat tgtattgcat tcgttagagt
      901 ttctggaaca ttcggcaatt tatattgcta acggacacaa tactaaccgt aaaatcggct
      961 ctccgattac tgaccgtgca ttgaaatcgc tgcatcatat ggcaacggat agcgtctcca
     1021 aaccttattt taccaaggca aaaggtggcg ttttaatgaa gtctatcact attgcgattc
     1081 gtaatggtaa acagcacgtt atcgggttac tgtgcattaa tattaatttg gaagtgccta
     1141 cctcacagtt tctcaattct tttattgccc ctgtagatac cgcttcagaa gttacttttg
     1201 ccagttcagt agaagatttg gtttcacaaa cgattcaaac gaccattgat gatgtgatgg
     1261 cagatcgtca aatttctaac aataataaaa atcgtcaaat tgtgatttcg ttatttgaga
     1321 aagggatttt tgatattaaa gattccatta accaagtagc ggagaagctg gatatttcac
     1381 gccatactgt gtatctctat attcgtcaaa ttaagcagga caatgattaa tggattatgt
     1441 attagcgata aaatcaccgg tttatggttc acaaggggca tttttagcct accaagtggc
     1501 ggaagaatta ttaaaagcca atcatacaat ttgccaaata ttcttttttc aagaaggcgt
     1561 gagcaatgct aatgccttag tgaatccagc aagcgatgaa gtgaatttag tcgagatgtg
     1621 gaaaaaattg gctaaattgc accgcttgcc tctgcatttg tgcattgctg ctgcccagcg
     1681 tagaggcgtg gtggatgagc aaatctcagc taatgcaaca cataatttag ccgaaggatt
     1741 taccctagcc gggttaggcg aatttagcca agcagtatta aaagcggatc gattactgac
     1801 tttttaagat gaagaaatat aaacttgcct ttttatttac ccagccacct tttggttcgg
     1861 cagttagccg tgaggggcta gatgccttgc ttgcagctag tgctttttgt gacgagcaag
     1921 agatagctat cctctttatc aatgatggcg tatttaatct cattgccgat caacagccgg
     1981 aaaaactctt acaaaaagat catatttcca ccttcaaatt attggagttg tatgacttaa
     2041 ctgaatgttt tatttgccaa gaaagtgtaa gtttacgagg gctggataat gcagattggt
     2101 tactgcgaat gcttcaattt aaaactcacg ctgagatgat cgcattgctc aatcaagctg
     2161 aaaaagtaat gacgttttaa ggaatattta tgctttatac cctttccaaa gcgaattatg
     2221 atgaagaaac cttaaacttc tttttctcac atcttagtga gaacgatgcg gttgttctgt
     2281 ggcaagatgg cgtgctacaa gcggtcaaaa gtccgcaatt ttttgcaaaa ttgccccgtt
     2341 gctatttatt ggcacaagat gtgcaagctc gaggattgca agagaagctc actgcatttc
     2401 agtgcatttc attatccgaa ttagtcaaat taacagcggt ttattttccc caggttgcac
     2461 tgtaacctag agaggatatt ttttgtaata ccaaataatt tagattatga tgtgattcct
     2521 aaaaaggaga atattatgaa aacaaaatgt cttattccgc tactagcact tacacctgtt
     2581 atggtgatgg cagaagaaaa taacacttgg gtagacaaga aacatgaaac agtaagcact
     2641 accttagatc gttgggcaaa caatattaac agttggctag gtgatgcaga cccagataaa
     2701 ccgggaacgg cttctttacg ggtaatgtta gatagccgtt gggataaaca cgataaattt
     2761 acttataagc cccgtgttcg tggtaaaatc aaactcccta tcttgaaaaa gcatctaaat
     2821 gtcgtatttg gtgatgacga actggataat gagcttaccg ataaaaatca tgctggaaaa
     2881 ttgtataaaa acgtcaatcc aaataaacgc tataactctc gtgaagcgag agattcgaac
     2941 tcttctatcg gtttacgttg gtctgatggc attaaggctt tagggattga gaccgattta
     3001 gatgctggta ttcgttcggg aagcgatatt ttcgggcgtt tacgcatcag taaagattgg
     3061 aaaatcaccg accagttcag tacccgccta gagcaaattt atcgttacgg ttcagagagc
     3121 aagcactatt tacgtactaa ctttgaaaat aaatataccg aaacggatac cacctttatt
     3181 atgaaccaca ccaattttga atatcgtcat gatgtagatg aagaaagaag ttgggggaat
     3241 agtttatatc gtcaacataa cttcaaacca ctcacgcaca tcagctatgg tatcagtatg
     3301 ggggggcgtt tagataaaga gttatcaaaa tttaactatt ggggtccatt tgtctcctat
     3361 cgtcaaccaa tctggcgcaa ctggctcttt atccagcctg aaatcagttt ttataacgac
     3421 aaagataaag atcgtaagca ctttattcag acatttgtac gtttagaggc tatcttctag
     3481 ctattaagcc tcaagtagaa tcttggggct tgtttttgca agcggtcaat ttcttgccaa
     3541 aatttacaaa atccgctata attcctaacc atttttagca aaaattggct gacggcttga
     3601 ccggtcagcc ttttgtgctt gaacgcaagg gctgattttg tcattttaat cagcaaaatt
     3661 tgcaaatttc ctgcccaatt tgaccgcttg cagtagcgat ttctgactgc ttgattggcg
     3721 attggaaaat gacatctcgt acagttttta taatgccact tccaaccgag tctttcgtgt
     3781 cggattgtgt aatctcaacc aaaatatatt tcagaggcta tcttaaaaaa tggcatattc
     3841 atattccgag aaaaagcgta tccgtaagag ctttggcaaa cgcccacaag ttctgaacgt
     3901 accttatcta ttaacaattc agcttgattc ttttgaaaaa tttatcgaaa aagatcctga
     3961 agggcagcaa ggtttagaag cggcattccg ttctgttttc ccgattgtga gcaacaatgg
     4021 tgcaacagaa ttacaatacg tttcttacga attaggcgag ccggtgtttg acgtgcgtga
     4081 gtgccaaatt cgtggtacaa cctacgctgc accattacgc gtgaaattgc gtttagtctc
     4141 ttacgatcgt gaagccgcag ccggtacggt aaaagacatt aaagagcaaa acgtgtatat
     4201 gggcgaaatc ccattaatga ccgataacgg tactttcgtg attaacggca ccgagcgtgt
     4261 tatcgtttct caattacacc gtagcccagg tgtgttcttc gattctgaca aaggtaaaac
     4321 ccactcttcg ggtaaagtgc tttataacgc acgcattatc ccttaccgtg gttcttggtt
     4381 agatttcgag tttgatccga aagataactt atttgcccgt atcgaccgcc gtcgtaaatt
     4441 gccggcaacc attattctac gtgcattagg ctacaccacc gaagaaatct taaatttatt
     4501 cttcgagaaa attaaatttg aaattgccga taataaatta ttgatgacgt tagtgcctga
     4561 gcgtttaaga ggcgagactg catcatttga tattgcagca aacggcaaag tatatgttga
     4621 aatgggtcgc cgtattaccg ctcgtcatat ccgtgcgtta gaaaaagaca atgtgaccca
     4681 aattgaagtg ccggtggaat atattgtcgg caaagtagcg gctcaagatt acgttgattt
     4741 atcttcaggt gaagtgattt gcccggcgaa tatggaaatc tcgatggaga tgttggcgaa
     4801 tttatcacaa gccggttaca accagatcga agtattattt accaacgatt tagaccacgg
     4861 tccatatatt tctgaaacct tacgtgttga tccaacttac gaccgtttaa gtgcgttggt
     4921 tgaaatctat cgtatgatgc gtccgggcga accaccaacg aaagaagcgg cagaagcatt
     4981 attcgataat atgttcttct cggcagagcg ttatgattta tcggcagtag gtcgtatgaa
     5041 attcaatcgc tcgttagaaa ttccggaagg cgtaggcagc ggtattttaa gcaacgatga
     5101 catcatcggt gtgatgaaaa aattaatcga aatccgtaac ggtcgtggtg aagtggatga
     5161 tatcgaccac ttaggtaacc gtcgtatccg cagcgttggt gaaatggcag aaaaccaatt
     5221 ccgcattggt ttggtgcgtg tagaacgtgc ggtgcgtgag cgtttatctt taggcgattt
     5281 agatggtgta acaccacaag atttaatcaa cgctaaaccg atttcagcag cagtgaaaga
     5341 gttctttggt tcatcacaac tttcgcaatt tatggaccaa aacaacccgc tttcagaggt
     5401 aacacataaa cgccgtatct cggcattagg cccgggtggt ttaacccgtg agcgtgccgg
     5461 ctttgaagtg cgtgacgtac acccgactca ctatggtcgt ttatgtccaa tcgaaactcc
     5521 tgaaggcccg aatatcggtt tgatcaactc actatcggtg tatgctcgta ctaataacta
     5581 cggtttctta gagactccat tccgtaaagt ggtgaatggt caagtaaccg aagagatcga
     5641 gtatttatct gcgattgaag aaagcaacaa tatcattgca caggcgaact caaacttaga
     5701 tgagaacttc cgttttaccg atacttatgt aacttgccgt cagcaaggcg aatcgggctt
     5761 attcaaaccg gaagaagttc aatatatgga catctcaacc caacaagtgg tttctgtggc
     5821 tgcggcgtta attccgttcc ttgagcacga cgatgcgaac cgtgcgttaa tgggtgcgaa
     5881 catgcaacgt caggcagttc caaccttgcg tgcggacaaa ccattagtcg gtaccggtat
     5941 ggaaaaacca attgctcttg actcaggtgt agcgattgtc gcaaaacgtg gtggtacggt
     6001 gcagtatgtt gatgcgtcac gcattgtagt gaaagtaaat gaagatgaaa ccattccggg
     6061 cgaagcgggt atcgatattt ataacttaat caaatacacc cgttcaaacc aaaacacctg
     6121 tatcaaccaa gtaccttgtg tgaacttggg tgagccggtt gctcgtggtg aaatcttagc
     6181 ggacggtcct tcaacagact taggtgaatt ggcattaggt caaaatatcc gtgtggcatt
     6241 tatgccttgg aacggttata acttcgaaga ctcaatgtta gtttctgagc gtgtggtaca
     6301 agaagatcgc tttaccacta tccacattca agaattatct tgtgtggcgc gtgataccaa
     6361 attaggtgca gaagagatca ccgctgatat tccaaacgtg ggtgaatctg cattaagcaa
     6421 attagatgaa tcaggtatcg tttacatcgg tgcagaagtg aaaggtggcg acatcttagt
     6481 aggtaaagta actcctaaag gtgaaaccca attaacaccg gaagaaaaac tattgcgtgc
     6541 gatcttcggt gaaaaagcct ctgatgtgaa agattcatca ttgcgtgttc caaacggtac
     6601 ttcaggtacg gttatcgatg ttcaagtatt tacccgtgat ggcgtagaga aagataaacg
     6661 tgcgaaagaa atcgaagaga tgcaactgtg tgaagcgaag aaagacttag cggaagagtt
     6721 ggaaatctta gaagccggtt tatttactcg tgttcgcaac ctattaattg aaggcggcgt
     6781 aaaagaatct gcattagatg gcgttgctcg tgaaaaatgg ttagaacaaa cccttgaaga
     6841 cgaagcgaag caaaatcagt tagaacagtt agcggaacag cacgaagagt tacgcaaaga
     6901 atttgaacgt aaacttgaga tcaaacgcaa caaaattatc caaggcgacg atttagcacc
     6961 gggtgtgtta aaagtagtga aagtttacct tgcggtgaaa cgccaaatcc agccgggtga
     7021 taagatggcg ggtcgtcacg gtaacaaagg ggttatctcg aaaatcaacc ctgtggaaga
     7081 tatgccatac gatgaaaacg gtcagccggt tgaaatcgta ttgaacccgc tgggcgtacc
     7141 gtctcgtatg aacatcggtc agatcttaga aacccactta ggcttagcgg ctcatggtat
     7201 cggtgatcag attgataaga tgatcaaaca gcaacaagaa gtggctaaat tacgtgaata
     7261 tatgcaaaaa gcctacgatt taggtcacgg ctcacaagtc gttgatttaa gcactttctc
     7321 tgatgaagaa gtgatgcgtt tagcgcaaaa cttacgcaaa ggcttaccgc ttgctactcc
     7381 ggtattcgat ggtgcacacg aaagcgaaat caaaggctta ttagagttag gcggcttacc
     7441 gacttcaggt cagatcacac tttatgatgg tcgtaccggt gagaaatttg agcgtccggt
     7501 aaccgttggt tatatgtata tgctcaaatt gaaccacttg gttgatgata aaatgcacgc
     7561 tcgttcaacc ggttcttata gccttgttac tcaacaacca ttgggtggta aagctcaatt
     7621 cggtggtcag cgtttcggtg agatggaggt ttgggcatta gaagcatacg gtgcggctta
     7681 tactcttcaa gaaatgctta cggtgaaatc ggacgatgtg aacggtcgta cgaagatgta
     7741 taaaaacatt gtagatggta cacattatat ggagccgggt atccctgaat cctttaacgt
     7801 aattaccaaa gagatccgtg cattagcaat tgatatggag ctggacgaag cgtaatggtt
     7861 tcactctccc ccttgatggg ggagagacag gcaaaggatt tgttcagaat cctttggcag
     7921 agagagggtg atgcaagcgg tgtaaatttg ctaaattttt gcaaaaatcg accgcttacc
     7981 ctctccctga ttttgcttct gaacgaggca aaatctatcc ctctcccaca aggggagagg
     8041 gtttaaaatc gcaaccaaat tcgtagagtg gatattcttt ccaccaaaca aaacaacctc
     8101 aaactagggg caaaaaagtg aaagacttag tgaagttttt aaaagcacaa acaaaatcga
     8161 acgaagattt tgatgtgatt aaaattggtt tagcatcacc ggacaagatc cgttcttggt
     8221 cttttggtga agtgaaaaaa ccggaaacca ttaactatcg taccttcaaa ccggagcgtg
     8281 atggtttatt ctgtgcacgt attttcgggc cggtaaaaga ttacgagtgc ttgtgtggga
     8341 aatacaaacg tttaaaacac cgtggcgtaa tttgtgaaaa atgtggtgtt gaagtaaccc
     8401 aaactaaagt acgtcgtgag cgtatggggc acattgaatt agcttgccct gtcgcacaca
     8461 tctggttctt aaaatcacta ccgtcccgta tcggtttaat cttagatatg ccgttgcgtg
     8521 atattgaacg tgtgctttat tttgaatctt atgtagttac tgaaccggga atgaccgatt
     8581 tagagaaaaa tcagttatta accgaagaac aatttatgga cgctgaagag cgttggggtg
     8641 atgaatttga agcgaaaatg ggtgcagaag gtatccaagc attacttcgt gatttagatt
     8701 tagaacacca atgcgaaacc ttgcgtgaag agttacaaga aaccaattca gaaaccaagc
     8761 gtaaaaaaat cactaagcgt ttaaaaacct tagaagcatt cttacaatcc ggcaacaaac
     8821 cggaatggat ggtgatgaca gtattaccgg tacttccacc ggatttacgt ccgttagtac
     8881 cgcttgacgg tggacgtttt gcgacttctg acttaaacga tttataccgc cgtgtaatta
     8941 accgtaacaa ccgtttaaaa cgcttgttag atttagttgc accggacatc atcgtgcgta
     9001 acgaaaaacg tatgttacaa gagtcggttg atgcgttatt agacaacggt cgccgtggtc
     9061 gtgcgattac cggttcgaac aaacgtccgt taaaatcttt ggcagatatg atcaaaggta
     9121 aacaaggtcg tttccgtcaa aacttattag gtaaacgtgt agattactca ggtcgttcgg
     9181 taattaccgt aggcccatac ttacgcttac accaatgtgg tttaccgaag aaaatggcgt
     9241 tggaattatt ccgtccgttt atctactcaa aattagaaaa ccgtggcatt gcttcaacta
     9301 ttaaagccgc gaagaaaatg gtagagcgtg aagatcctat cgtatgggat attcttgccg
     9361 aagtgattcg tgaacacccg attctactta accgtgcacc aacacttcac cgtttaggta
     9421 tccaagcgtt tgagccgtta ttgattgaag gtaaagcgat ccagttacac ccactcgtgt
     9481 gtgcggcgtt caatgcggac ttcgacggtg accaaatggc ggttcacgtt ccattaaccc
     9541 ttgaagcaca gttagaagct cgtgcgttaa tgatgtcaac caacaacgta ctttcaccgg
     9601 caagtggtga tccgattatc gtaccgtctc aggacgttgt actcggtctt tactatatga
     9661 cccgtgagaa agtaaacggt aaaggtgagg gaatgtactt ccttgaccct cgtgaagcgg
     9721 aaaaagcata ccgtaccggt caggctgaat tacattctcg tgttaaagtg cgtgttactg
     9781 aatatgagaa aaacgaagca ggcgaattag aagcaaaaac ttcgttagta gataccacca
     9841 ttggtcgttc aatcttatgg atgattgcac caaaaggtat gccgtttagc ttgttcaacc
     9901 aaaccttagg caaaaaagcg atctcgaaat taattaacga gagctatcgc cgtttaggtt
     9961 taaaagaatc tgtggtttta gctgaccaaa ttatgtacac cggctttgct tatgctgctc
    10021 gttctggtgc ctcagtaggt atcgacgata tggtaattcc ggagcaaaaa tacgcaatca
    10081 ttgaagcggc tgaagcggaa gtcgctgaga tccaagagca attcaacggc ggtttagtaa
    10141 cagccggtga gcgttataac aaagtgatcg atatttgggc tgctgcaaac gaacgtgttg
    10201 cgaaagcaat gatggaaaac ctttcaacgg aagaagtaat caaccgtgaa ggtaatccgg
    10261 aaaaacaagc ctcatttaac agtatcttta tgatggcgga ctccggtgct cgtggttctg
    10321 ctgcacagat tcgtcagtta gcgggtatgc gtggcttgat ggctcgtccg gacggttcga
    10381 ttatcgaaac cccaattact gcaaacttcc gtgaaggttt gaacgtatta cagtacttta
    10441 tttcaaccca cggtgcacgt aaaggtcttg ccgatacggc attaaaaaca gcgaactccg
    10501 gttacttaac ccgtcgttta gttgatgtgg cacaagattt agttatcatt gaagatgact
    10561 gtggtacgca cgaaggtatc gtgatgacac cacttatcga aggtggtgat gtgaaagaag
    10621 ccctgcgtga tcgtgtatta ggtcgtgtgg tggcagaaga tgtgttaaaa ccgggtacag
    10681 atgaagtatt aattccacgc aacaccttat tagatgaaaa atggtgtgat gtggtggatc
    10741 gtgaatctgt ggatgtgatc aaagtacgtt cggtagtaac ttgtgataca gacttcggtg
    10801 tgtgtgctaa atgttacgga cgtgacttgg ctcgtggtca cttaatcaac caaggtgaag
    10861 cggtcggtgt tattgcggca caatctatcg gtgagccggg tacacagtta acgatgcgta
    10921 cgttccatat cggtggtgcg gcttctgcgg cagcaaaaga atctagcatc caagtgaaaa
    10981 acgcaggtac gattaaatta accaacgcta aatttgtaac caacaaagaa ggcaaaatcg
    11041 tattaacttc tcgtaatact gaattaactg tcatcgacac cttcggtcgt accaaagaaa
    11101 actataaagt gccttatggt gcggtgcttt ctaaacacga cggtgcagaa gtggctgtgg
    11161 gtgaagtggt tgcgaactgg gatccgcaca caatgccggt aatctcagag gtatcaggtc
    11221 gtatccaatt tagcgacatc gtagatggct taaccgttac tcgccaaacc gatgaattaa
    11281 ccggtttatc atctatcgtg gtgcaagatg tgggtgaacg tgcaaccgca ggtaaagatt
    11341 tacgtccggc attacgctta gttgatagca acggcaaaga catcttaatt ccgggtacag
    11401 acgttgcagc acaatacttc ttaccgggta aagcaatcgt aaccttagac gatggtgcag
    11461 aaattgaagt cggtgaagcc ttagcccgta ttccacaaga atctgtgggg acgaaagata
    11521 ttaccggtgg tcttccacgc gtagcagact tattcgaagc ccgtaaaccg aaagagccgg
    11581 caatcttggc ggaaatttca ggtattgtgt cgttcggtaa agaaaccaaa ggtaaacgcc
    11641 gcttggtaat tactccggcg gaaggcgaag cgtttgaaga gatgattcca aaatggcgtc
    11701 agctcaacgt atttgaaggc gagatggtac aacgtggtga tgtgatatca gacggtgcag
    11761 aaactccgca cgacatctta cgcttacgtg gcgttcacgc cgttaccgac tacatcgtaa
    11821 acgaagtgca agaagtttac cgcttacaag gggtaaaaat taacgacaag cacatcgaag
    11881 tgattgttcg ccaaatgttg cgtaaagctg tgatcaccaa cgcttacgac tctgaattct
    11941 tagagggcga acaagtggaa gtggctcgtg tgaaaattgc caaccgcaaa cgtgctgaag
    12001 aaggcaaacc gttggtagaa tttgaacgtg aattgcttgg tattaccaaa gcatctcttg
    12061 caacagaaag ctttatttct gcagcctcgt tccaagaaac cactcgagtg cttaccgaag
    12121 ccgcagtggc aggtaaacaa gatgaattgc gtggcttaaa agagaacgta atcgttggtc
    12181 gcttaatccc ggcaggtacc ggttttgctt accaccaagc acgagctaaa aaacgtgccc
    12241 aactggaagc aggaattgca gttgtccctg aatttgaagc accggcagct aaagccaatt
    12301 cattcgttac cgatgcagac atcgaagctg aatttgaatt tgttgcagac gatgcaaccc
    12361 aaagtttagc agcgttgtta aatgcgggtg aggaagagta atagctcgta gggtatgata
    12421 aattaaaaaa tct
//
LOCUS       DANLXK010000074        12236 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.074, whole genome shotgun sequence.
ACCESSION   DANLXK010000074 DANLXK010000000
VERSION     DANLXK010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12236
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(68..706)
                     /locus_tag="PXD88_001691"
     CDS             complement(68..706)
                     /locus_tag="PXD88_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL6281250.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
     gene            complement(848..1642)
                     /locus_tag="PXD88_001692"
     CDS             complement(848..1642)
                     /locus_tag="PXD88_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6281251.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
     gene            complement(1743..2819)
                     /gene="fbaA"
                     /locus_tag="PXD88_001693"
     CDS             complement(1743..2819)
                     /gene="fbaA"
                     /locus_tag="PXD88_001693"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL6281252.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            complement(2916..4091)
                     /locus_tag="PXD88_001694"
     CDS             complement(2916..4091)
                     /locus_tag="PXD88_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL6281253.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLATELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            complement(4346..5704)
                     /locus_tag="PXD88_001695"
     CDS             complement(4346..5704)
                     /locus_tag="PXD88_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL6281254.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(5774..6601)
                     /locus_tag="PXD88_001696"
     CDS             complement(5774..6601)
                     /locus_tag="PXD88_001696"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL6281255.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(6615..7703)
                     /gene="aroB"
                     /locus_tag="PXD88_001697"
     CDS             complement(6615..7703)
                     /gene="aroB"
                     /locus_tag="PXD88_001697"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL6281256.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(7727..8248)
                     /gene="aroK"
                     /locus_tag="PXD88_001698"
     CDS             complement(7727..8248)
                     /gene="aroK"
                     /locus_tag="PXD88_001698"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL6281257.1"
                     /translation="MAEKRNIFLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAG
                     ADIDWIFDVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIY
                     LETTVDKQFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKV
                     VANQIIDMIDNLQ"
     gene            complement(8485..11049)
                     /locus_tag="PXD88_001699"
     CDS             complement(8485..11049)
                     /locus_tag="PXD88_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL6281258.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            11173..11871
                     /locus_tag="PXD88_001700"
     CDS             11173..11871
                     /locus_tag="PXD88_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL6281259.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            11847..>12236
                     /locus_tag="PXD88_001701"
     CDS             11847..>12236
                     /locus_tag="PXD88_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281260.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIENKIISLNSNHTNTLPFAEPKKIAQLLAIIDNL
                     PLKNGGIETIQIYLETDLYLKIIGNLDN"
BASE COUNT         3809 a         2679 c         2065 g         3683 t
ORIGIN      
        1 ataaattaca acgctcaaat tttaacaatt ttttgccaaa aaattaagat atttaaccgc
       61 ttgcacctta tattttaaaa ccttgtccat cgttccaaga aaccgtatat tctagaggta
      121 aacggcaact tggcaacgct gggtttgctg ctttaccgat agctagtagc ataacaggca
      181 aataacgttc tgcatctata ttcaataatt ttaatacagc agggcgctca aacacgccta
      241 tcgcatgagt atcatagccc ttatctttgg caattagcat taattgcatt gccgccaaac
      301 tagtatcaat taatacctga tctctaattt ctgcttgagt tgcttggtta tgaagattta
      361 gtaaaaaatc aaatttacgt tcacgaaact ctttatgcaa acacccagtt tctaccgatt
      421 gatcaacaat tgcgcctaat aatttttcat attgcaaatc tgccaatatc accacaatag
      481 cagacgctgt ttcacaaggt gggccattaa aggcaacatt ttttgataat gctgctttaa
      541 gaatttcaac atcaataatg acaaaacgcc aaggttgcag atttgctttt gagggagcaa
      601 gctgggataa agcgaccatt tcttctaatt cagttctact aatcttaatt gttgaattaa
      661 aagctttgat agttttacgc tgttcaatcg tatgtttcaa ttccatctct tttctcctat
      721 ctctcaaaca attgagatag tctataattt aaagattagg aatgtaataa ttgaaaagag
      781 ttattctgca tatttattga aataggtcaa aattatcaag taatcatatt agagcaggag
      841 taaagattta gcttgcccaa gcataggaac taaggtgctt tccaaaatga ctttcaatta
      901 aacgtttcgt aatttgatgt tgcggattca gtaaaacctc tttcgtcaag ccatactcta
      961 ctacttcgcc actttgcatc accattattt tatcggcaat atgtttgatc agacctaaat
     1021 tttgccccac ataaatataa gcaatccctt gtcgctgctg gacacttaac attaaattaa
     1081 ttaattgtgt tttgactgaa aaatccagtg aattaatcgt atcatccgca ataataattt
     1141 ccggttctaa aattaaagca cgagcaaacg caatacgctg cttttgccca ctggaagcct
     1201 ctgaaatagg aacgagcgct tgctcaggat acattcctac caattttagc gtattaaaaa
     1261 tacgctcatt tctttcctct tcatttaaat ctgtcgccaa gcggagcgga gcatctaaaa
     1321 tttgtcctat attataatta ggatcaaagg catcgttagg gtcctgaaac atcatacgaa
     1381 tatgcttagc tcggtattta taatcgccaa atgaaagcgg tgttcctcta aaaatcagtt
     1441 ctccagatgt tggcccaacc ataccagcaa ccattttagc caaggtagat ttcccagctc
     1501 cgttttcacc aataatcgct aaagtttcct tgcgatttag ggtaaaagaa acttctttta
     1561 ccgcataaaa atcttgttta tgaaataggc tactacgttc aacaaaacgc ttattcagat
     1621 gattaacttc aagtaatgcc ataataaatt ggtgcttgga aataaagtga tagtttaccg
     1681 caaaaaataa ataaaaaaag accgcttata caagcggcct gatttatgga attttttgca
     1741 aattataaaa cgttcacaca gtttaagtct tcgaaagatt gctctaagcg tttagacata
     1801 gactcttcca ttttacgtaa ccaaacacgt ggatcgtagt attttttgtt tggtgcatca
     1861 gggcctgtcg ggttacctaa ttgaccttgt aaatatgctt cgtttgcttt gtagaattga
     1921 agaataccgt cccacgcagc ccattgggtg tcagtgtcaa tgttcatttt gattgcaccg
     1981 tagctgattg cttcacgaat ctcttcacgt gaagaaccag aaccgccgtg gaaaacgaag
     2041 tctaatgact ttgccggtaa accacgctct ttagatacat actcttgtga agcacctaag
     2101 attgatggtt ttaattttac attacccggc ttgtaaacac cgtgtacgtt accaaatgct
     2161 gccgcaatcg tgaaacgtgg gctgattggg cttaattggt cgtaaacata taaaacttca
     2221 gaaggttggg tgtaaagttt agattcatct acatcagaat tatctacgcc atcttcttca
     2281 ccaccggtta cgccgatttc gatttcaagg gtcataccga ttttgtccat acgggctaaa
     2341 tattcacggc agatttccat attttcttcg attggctctt cagataaatc gatcatatgt
     2401 gaagagaata acggacgacc ggtttctgcg aagtgttttt cgcctgcttc aagtaagcca
     2461 tcgatccaag gtaataagtt tttcgcagcg tggtcggtgt gaagaatcac aggcacacca
     2521 tattcttctg ctaattgatg aacgtgtttt gcacccgcaa tcgcccctaa tacatctgca
     2581 cgagcgcctg aagccggctt aatgccttta cccgcataga actgcgcacc accatttgag
     2641 aattgcacga ttaccggtga ttttacacga gcggctgttt ctaatacggc attaactgaa
     2701 tctgaaccca cgcagtttac tgccggaata gcgaagttgt gttctttagc ataagcgaaa
     2761 actttttgta cgtcgtcgcc tgttactaca cccggtttta cgatgtttaa taatgacatt
     2821 tttttcttcc tttgtatgaa atgtgcaaaa gcacattgtt aaaatatacg gccaaatctt
     2881 gcaaaatttt cacaaaattt gaccgcttgt aactgttagc cgttagctcg tttttctaag
     2941 atttccactg ccggtaatac tttaccttcc acgaattcta agaacgcacc gccaccggtt
     3001 gaaatgtaag aaattttgtc tttgataccg aataaatcaa tcgcagctaa ggtatcgcca
     3061 ccaccggcaa ttgagaatgc accgtttgcc gttgcttctg caatcgcatt tgaaatcact
     3121 tctgttcctt tacggaagtt agggaactca aacacgccga ccggaccatt ccaaaggatg
     3181 gtttttgaat tacggataat ttcagctaat tgctctgacg atttttcacc aatatcgaaa
     3241 attgattcat cagctcgtac ttcactcacc gctttttccg ttgccggtgc agtttcagag
     3301 aattcagtac ctacacgcac atcaaccgga acaggaatat tggttacttg tgctaaacgt
     3361 tttgcttcag ggattaaatc ttcttcgtat aatgatttac ccacagcgtg accttctgcg
     3421 gcaataaagg tattggcaat accaccgccc acgattaatt ggtcggcaat ttttgaaagc
     3481 gaatcaagca cagttaattt agtagatact ttagaaccac ccacaatcgc taacattgga
     3541 cgttgtggct cttttaatgc tttgcctaat gcatctaatt cagtggctaa taacggacct
     3601 gcacacgcaa caggggcata ttctgccaca ccgtaagttg aaccttccgc acggtgagct
     3661 gtaccgaatg cgtccattac aaacacatca caaagtgatg catatttttt tgctaactca
     3721 gggtcgtttt tcttctcacc tttgttaata cgcacgtttt caagcaccac gatttcattc
     3781 tcgtttactt caacaccgtc taagtaatca cgcactaaac gaacaggaac acctaaatct
     3841 gatgcattta agtaatcaac tacaggttgt aaagagtttt cctcttcaaa tacgccttct
     3901 gtcggacgac ctaaatgcga agttaccatt actttagcac ctttttgtaa cgctaatttt
     3961 aaggttggaa tggtagcaac aatacgggca tctgatgtta ctttgccatc ttttaccggt
     4021 acgttaaggt cagcacgaat aaataaacgt ttacccgcta aatcaaggtc agtcatttta
     4081 ataacagaca tagtttgttc ctctttagat taaaatttaa aagtgataac ggtcggatta
     4141 tatcagtttc taatcatttt gggctaacct agatcaaata aatgattaat tttttatcat
     4201 tttagaatgc tattatcctg actgttctta ttccccccca atatgcttgg ttaattaagc
     4261 aagaattgca aattccccac aaaatttaac cgcttgtcac taaaaataaa gctgtttgaa
     4321 aatccattca aacagcttat agaatttaga gtgaattaaa gaaaatcacc aagataatca
     4381 ccggaatcac aaagcgaaca tagttaaacc aaatagtggt aaacatttta cccgcaccta
     4441 attcctcctt cgcctcttct tttagaacaa agccaacgaa aatcgcgcta cctaaggcgg
     4501 ttaaaataaa cagaatattg ccactaatat aatcgaaggc atcaaaaatg ctcttgccca
     4561 taacctgcac atcttgcaat atattgtcac ttaatgctga tggaatatta cccaacagaa
     4621 aaatagtagc caaagtaata aaaatagctt tttgacggct aatctttgcc ttctcttgca
     4681 atgcagtgat aataacttca taaatagtta acgaggttgt taatgccgcc accactaata
     4741 gactaaaaaa gataaccgca aaaactgttc ccccccacat atttgagaac acaatcggca
     4801 aactttggaa tactaaagtc ggacctgaat ttggagcaac gccaaagcta aataatgacg
     4861 gaaaaatcat aaaaccggca agtaccgcaa ttaaggtgtt catcacccca gtaattgttg
     4921 ctgtttttac taaattctcg ctcttatcaa ggtagcttga aagggttatc aacacaccaa
     4981 aaccaaggct taatgcaaaa aatacttgac ccagcacaaa cacaaacaat tttggtgtga
     5041 tttttgaaaa atcgggcatc agataaaagg caatgccttc agcagccccc ggtaaggtaa
     5101 tatttcgaac caccatcaca atcaggaaaa taaacagaat cggcatcaaa tatttcactg
     5161 aacgctcaat accgtccaca atgcctttta ccaaaataaa ataattcacc aatacaaaaa
     5221 gtgccgtata agcaataatt gtcattgggc tattaaaaat actttgttgg aagaattgtt
     5281 gggtcgtgcc aacggtaaca ggttgagaca gatctagtgt ccccgtgagt aagctaccga
     5341 tataatttaa tacccaacca ccaagtacca tatagtaggc aagaatacca aatgctccaa
     5401 gcaagcccat atagccaaga attttccaac ctgaggcaat ttttttacca ttagcaaaac
     5461 cggcaaaagc atcaatagca ttcactctca ttcggcgacc aattacattc tccactaata
     5521 tcatagggat accaattacg atcatcgcaa tacaaaataa aaacacataa gcaccgcctc
     5581 cgtgttcccc cacaagataa gggaaacgcc aagttgcacc aaaaccgact gttgcaccag
     5641 caacggtcat aatatacgcc aatcggttag accaagattg gcgttcttgt tgttgatttg
     5701 ccatttaata ctccatcggc taacaatacc gcttcaacca acaagcggtc agatttttag
     5761 aaaatattac aaattaaatg aagagtgcga ataactcgcc aactttaacc cttgagccca
     5821 ccttctgccc tattgaacgc tgtacctgaa tttgggtaat atcggcagat tgataaatcc
     5881 tacgggtaaa atcagtatcg tgatttgaaa ttaatacggg aacgcctaat cctttcattt
     5941 ctaaagccag tgttgccaaa cgcccttgtt gctctaggct aaaaccaccg ccagcatatt
     6001 gcgtaaaatt cgtttcttgt gctaaaggag cgtaaggtgg gtcgcagtaa atcacataat
     6061 ccgttaattg attttttgcc aactcaaaga cctgttcaaa atccgcacac acaaaagttg
     6121 ccttttgtgc tttttcagca aaaaaacgta gttctttttc tggaaaataa tgggttttat
     6181 aacgcccaaa gggaacattg tacccttttt tctggttata acggcaaagt ccgttatagc
     6241 caaatcgatt taaatacaaa aaaatcaccg agcgacgaaa aatatctttt gagcgattaa
     6301 actccgcacg gcgtgcttta taaaaggctt ctgtattcgc ttgtgggtga agaaacagtt
     6361 gctttgtttg cgcaatatat tcctcaacat ctgctttcac cacgttgaaa agattaatca
     6421 agtcaggatt aatatcagca agaatataac gttcaaaatc tgtattcaga aagaccgaac
     6481 ctgcaccaac aaaaggctcg actaaacaag ccttttttgg caaatgggtt tgaatatctg
     6541 gaattaagcg atatttaccg ccagcccatt ttaaaaaggc tcgatgctta gggtgattca
     6601 tttcatttta aacattaacg ttgggtaaaa cgctcaatag aggctaatac ttgagattct
     6661 gtggcttgcg atgaaacgta agcttcacca agtgatttca ataaaattag gcgtaattga
     6721 cctgccagta cttttttatc tcgccacata taaggtagat attctgccgg ttccattcca
     6781 tcaggtgaaa ttgttggcaa attggctcgg gccaataatt tttccaagcg agcaacctct
     6841 tgaggactta aatcccccag aatacgagat aattccgcag cctctagcat accaaccgaa
     6901 acagcctctc cgtgtaacca tacaccatag cccatacgtg cttcaatggc gtgaccaaag
     6961 gtatgtccta agtttagtaa tgcacgatct cctttttccg tttcatctcg agcaaccacg
     7021 tcagctttta gctggcaaca acgctgaata caatattcca gctcatcttg cttgagactg
     7081 accaaatcat caatatgctt ttcaagccat tcaaaaaaag taacatcaaa gattgcaccg
     7141 tatttgatga cttccgccaa accagcactg acttctcttt tggataaggt atggagcgta
     7201 ttggtatcaa caatcacaga aacaggctga taaaaagccc caatcatatt tttaccgagt
     7261 gggtggttta ctgccgtttt cccgcctact gaagaatcaa cttgagccag taaagtggtc
     7321 ggaatttgta taaaacgaat accacgttgg taagaggcag ctgcatagcc tgcaacatca
     7381 ccgattacac caccgcctaa agcaattaaa gtggtatcgc gattatgatt tttttctaat
     7441 aatgcggtaa aaatcaaatt taatgattct agcgttttat attcttcacc gtcgggaatc
     7501 aataccgaat caacgtggca acccagctcc tttaacgcat ttgttaccac actaagataa
     7561 tgtgtcgcca ccgttggatt tgagacaatc atcaccttat ctccagattt taatgggcta
     7621 taactagcag gctgatttaa taaccctgca ccaattataa tcgggtaacg acgctctttt
     7681 aattccacat tgacttgtaa catatcttag ctcctttctt acctggctac tgtaaattat
     7741 caatcatatc aataatttga tttgccacta ctttagcgct ctgctcgtcc gtatgaatag
     7801 taatatctgc aatttcttca tacaatgggt tacggatttt cgctaactct tccaacgttt
     7861 tacgggggtc ttctgtttgc aataaagggc gttttttatc tcgctgagta cgttcaaact
     7921 gtttatccac tgtcgtttct aaataaataa cgataccacg agccgataac acattacggt
     7981 tatctttaga taaaatcgaa ccaccgccag ttgaaagcac gataccataa ttttgcgtca
     8041 gttcatttag aatacgttct tcacgcttac ggaaaccctc ttcaccttca acatcgaaga
     8101 tccaatcaat atccgcacct gctcgttctt cgatcacact gtcggaatcc ataaattcca
     8161 tacctaatgt ttgagcaagc tgacgaccaa tcgtactttt acctgctccc atcggcccaa
     8221 tcaaaaaaat attacgtttt tcagccatta tttcttcttc attttaaaat ttactaaaca
     8281 tttgatctgt gaaattaaaa gaaaaaatga ccgcttgttc tacaagcggt ctgatttctt
     8341 taaaaaattg caataaaact catttattga ctaaggaata tccaaatata actcacaaat
     8401 cgcccaaaat aaaattggca cttattatcg caagaaatcc ccctattttt caacttttaa
     8461 gagcattatc cttgtaataa attattagaa taattcaccg ctttttagca cccctggtgg
     8521 aggtaatcct aaacgtaacg gcgcagattc tgttttttga ggcgcttttt cagtataagc
     8581 tctctctaca atataacgtt ttgtaggctc agtaccctta ataaaatact ctttacgtcc
     8641 atttcctaag aaaccactat tagggtcaat attaacctca ataatatttt ttggaagggt
     8701 acttttttcg acaggcttat ctgacaatgc aactttcata taatttgtcc aagctggtaa
     8761 agcagtacta gaacctgaag cacctctacc taatactctt ttattatcat caaagccaac
     8821 gtacacaaca gtagaaatat tagcaccaaa tcccgcatac caagttgcct tggcattatt
     8881 ggttgtacca gtcttcccgc ccacatccgc tcgttttatc gtattgagca ttttatagct
     8941 tgttcctcgc cagccatatt caggctcacc agtaattgct gtagctaaag cactacgcat
     9001 taaaaaagcg agttcatcac taataacatg aggagcgtaa cgtaaccctt tgatatgatg
     9061 agaagattct gccattaagc tcggcgcatt tttctcgcta ttgttcgctt gtaattcagg
     9121 ttctgaatcg ccaacatctt ccacaacatc gtcgtcatca ttattcgagg aattcgctat
     9181 agtttgtaca ccgacttgag cttcatcatg aattttgact gattcaaaat atttaggctc
     9241 agggtaaaca actgggctat cgcaactatt acaagctact acaggatttg cttgatataa
     9301 ctcgtagcct tgggcatcaa taatacggtc aatgatatat ggttcaatca aataacctcc
     9361 attattaaat actgcataag ctcgagccat ttctaatggc gtaaaagatg cagcacccaa
     9421 tgcaagagat tctgttgcaa catactgatt tcggttaaag ccaaaacgtt gtaagtagtc
     9481 tgcaacataa tcaatccctg ccatttgtaa tatacgaata gccaccatat ttttcgattt
     9541 acctaatgca acacgagttc tcaacgggcc gccataaacc ccatcggcat ttttaggtcg
     9601 ccactctttt tgccctttct ttttaatgac aataggagaa tcgctaattg ttgttgaaag
     9661 acttagccct ttattcattg ccgctgtgta aataaacggt ttaatcgcag agcctacctg
     9721 aactaatgac tgagtcgcac gattgaaacg gctttgttca aagctaaagc ctccaacgat
     9781 agattcaatg gcaccgtttt cactattaat tgacactagg gctgaattta cctccggaat
     9841 ttgtcctaaa gcccactccc tatttttatt ttgacgtacc caaatttgtt cacctgcttt
     9901 taacccttta ggtgcaaaag aagcatttgt acgttttaaa acagagatat caccatttgc
     9961 caataaaatt gtatattttg atttatctgc ttgcattaca acagctggtg taaacggctc
    10021 tgattttggc agcttactta aatgatcgat aattttctca tcgtcccaag cagaactacc
    10081 tgtccataat ttttcagcgc ctcgccaacc atgacggcgg tcataatcaa tcaaattttc
    10141 acgtaacgca tcttgtgctg ctttttggtc tgctgaaagt accgtggcgt acacttttaa
    10201 gcctttgtta taagcaatat tttctccata gcgtttcaca atttcttgac gaaccatttc
    10261 tgtcacataa tccgctcgaa attctaatgt cgcaccatag tagttagcta ctactggctc
    10321 tgctttagct ttctcatatt cctcttttgt aatatctccg gtttctagca ttctcccaag
    10381 cactacatta cgacggtctt ccgcccgttt tactgaataa agtggattca tcgttgaagg
    10441 cgcttttgga agccctgcaa taattgctat ttcagaaagg gttaaatctt tcaaagattt
    10501 attaaaataa gttttagccg cagcggcaac accgtgagaa cgatacccta ggtaaatttt
    10561 gtttaaatac agctccagaa tctcattttt actgagaacc tgttcaattt ctaaagctaa
    10621 aattgcctct ttggccttac gctctaaact acgttcaggt gttaagaaaa agtttttcgc
    10681 cagctgctgg gtgattgtac ttgcgccttg agtatctccc tggctagtgc gccatattgc
    10741 acgcataata cctttaggat cgatcccttt atgctcgtaa aaacgtgcat cttcggtagc
    10801 aagaatcgct tttactaaca tcggtggaat atcatcaagc ttgaccggaa tacggcgttc
    10861 ttctcctact tcaccaatta atttaccatc taaggtaaaa atctgcatag gctgctgtaa
    10921 ctctacattt ttcagcgttg ccacatcagg caaatcagat ttgaaatgca tgtacagtaa
    10981 accaccaatt accccaccta aaaccaagag tgaaagtaaa gcactaaata ttatttttgc
    11041 gatccgcatc gaaaaaatct cttttggtta atgacgaaac ataaatttaa agccaatatt
    11101 aggtcactaa gtataagcta aaaacgctta cttcgcataa ctaattgcaa aactttcctt
    11161 actatactta ctatgaaatt acttaaagca cattcaaaaa caccttcaaa ccgtatcatc
    11221 ttaggcttaa gtgaagatga acaacgttac tgcttagtca aaaataaagc agaaaaattc
    11281 accgtttttt ggcaagccaa gcctgcgagc atcgaagagc ttatcggtaa tctcacccca
    11341 caagaacaag caatgatgac gctggttcgc ccgatccctt accaatacat ttggcgaaaa
    11401 accgttttta tggctaacac cctcaatgaa gctcaattac accgtaaggt aattcacatt
    11461 ttaaaaaatg agcagccact tgcattggat ctactcaata ttgactatca gcgatttcca
    11521 agcagcaacg ataatctgga taaagtggtt atctacgccg tgcgaaaaag ttataccgag
    11581 aatttgagcc aatttaacag catcttagat tgtgagctgc attgctatgc acgggctata
    11641 attcatttaa cacaatccca aaataatcag cctgcgccct gtttttcatt taaacagaag
    11701 tacttccaat ttaccgagac ggaattactg atattgcaaa cagaacctga ggattgtatt
    11761 catctatctg atctcaaaat tgaccatctt gaaatcgagt gtgagcaaga gaaacagcta
    11821 tattgcctcg ccttaggagc aagtttatgg aatggcaagg tattgattta agtgctaatc
    11881 gaaaaaataa ctggtttgcc ggcagtgata aaggcatcaa aaacgtgatt tatacacttt
    11941 tattatctgc cctcattagc ttggctctga tttttctcta tttgcaaaaa aatcaagaaa
    12001 ttcaaccgct tgcacagcaa ttagagctgg taaaaaccga tatattaaat attgaaaata
    12061 aaattatcag cttgaatagt aatcatacaa acaccttgcc ctttgccgag cctaaaaaaa
    12121 tagcacaact actggcaata atagataact taccgctcaa aaatggggga attgaaacga
    12181 tacaaattta tcttgaaacc gatctctatt taaaaataat cggtaattta gataat
//
LOCUS       DANLXK010000075        12151 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.075, whole genome shotgun sequence.
ACCESSION   DANLXK010000075 DANLXK010000000
VERSION     DANLXK010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12151
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            2..214
                     /locus_tag="PXD88_001702"
     CDS             2..214
                     /locus_tag="PXD88_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281261.1"
                     /translation="MTNKKIQKAIELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYL
                     LKIEAATNGQVTIREICEELGNATAK"
     gene            198..482
                     /locus_tag="PXD88_001703"
     CDS             198..482
                     /locus_tag="PXD88_001703"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281262.1"
                     /translation="MQQQNKSPEQAGLASGKFTVRRNQDGKWRLDLTLLDFGISSPET
                     TQARCKLLQELQLALLQGQGHLNTVGVNVRKAGPVVCVGSLLSDLLNHQE"
     gene            691..963
                     /locus_tag="PXD88_001704"
     CDS             691..963
                     /locus_tag="PXD88_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281263.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            1046..1378
                     /locus_tag="PXD88_001705"
     CDS             1046..1378
                     /locus_tag="PXD88_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281264.1"
                     /translation="MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            1391..1684
                     /locus_tag="PXD88_001706"
     CDS             1391..1684
                     /locus_tag="PXD88_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281265.1"
                     /translation="MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAF
                     LQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD"
     gene            1836..2078
                     /locus_tag="PXD88_001707"
     CDS             1836..2078
                     /locus_tag="PXD88_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281266.1"
                     /translation="MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            2075..2407
                     /locus_tag="PXD88_001708"
     CDS             2075..2407
                     /locus_tag="PXD88_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281267.1"
                     /translation="MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERV
                     VLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCL
                     TYNGTFIK"
     gene            2404..4764
                     /locus_tag="PXD88_001709"
     CDS             2404..4764
                     /locus_tag="PXD88_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL6281268.1"
                     /translation="MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVK
                     YVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEV
                     KRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRV
                     TEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN"
     gene            4777..5109
                     /locus_tag="PXD88_001710"
     CDS             4777..5109
                     /locus_tag="PXD88_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281269.1"
                     /translation="MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFRE
                     GEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEM
                     KLGLLEAK"
     gene            5109..5561
                     /gene="ssb"
                     /locus_tag="PXD88_001711"
     CDS             5109..5561
                     /gene="ssb"
                     /locus_tag="PXD88_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6281270.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            5572..5904
                     /locus_tag="PXD88_001712"
     CDS             5572..5904
                     /locus_tag="PXD88_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281271.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            5894..6163
                     /locus_tag="PXD88_001713"
     CDS             5894..6163
                     /locus_tag="PXD88_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281272.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWIDDLGGKNGTITSGQ"
     gene            6138..6428
                     /locus_tag="PXD88_001714"
     CDS             6138..6428
                     /locus_tag="PXD88_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281273.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
     gene            complement(6698..6880)
                     /locus_tag="PXD88_001715"
     CDS             complement(6698..6880)
                     /locus_tag="PXD88_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL6281274.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(7158..8156)
                     /locus_tag="PXD88_001716"
     CDS             complement(7158..8156)
                     /locus_tag="PXD88_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6281275.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            complement(8384..8460)
                     /locus_tag="PXD88_001717"
     tRNA            complement(8384..8460)
                     /locus_tag="PXD88_001717"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8424..8426),aa:Val,seq:gac)
     gene            complement(8524..9324)
                     /gene="apaH"
                     /locus_tag="PXD88_001718"
     CDS             complement(8524..9324)
                     /gene="apaH"
                     /locus_tag="PXD88_001718"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL6281276.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            complement(9416..11392)
                     /locus_tag="PXD88_001719"
     CDS             complement(9416..11392)
                     /locus_tag="PXD88_001719"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL6281277.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            11552..11830
                     /locus_tag="PXD88_001720"
     CDS             11552..11830
                     /locus_tag="PXD88_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL6281278.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            11855..12151
                     /locus_tag="PXD88_001721"
     CDS             11855..12151
                     /locus_tag="PXD88_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL6281279.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
BASE COUNT         3653 a         2148 c         2784 g         3566 t
ORIGIN      
        1 tatgactaat aagaaaattc agaaagctat tgaacttgta ggaacacaaa caaaattagc
       61 tgaagcttgt ggagttagtc agcctacggt cttgaaatgg ctaaacggag gcggaatttc
      121 cgctgaatat ctactaaaaa tcgaagctgc cacaaacggg caggtaacaa ttcgtgaaat
      181 ttgtgaggag ttgggaaatg caacagcaaa ataaaagccc tgaacaggca gggctagcga
      241 gtgggaaatt tactgtaaga cgtaatcaag acggtaaatg gcgtttagat ttgaccttgt
      301 tggattttgg tattagttcg ccagaaacga ctcaagctcg ttgcaaattg cttcaagagc
      361 ttcagcttgc tcttcttcaa ggtcaaggtc atttaaatac tgtcggcgtg aacgttcgaa
      421 aagccggtcc agtcgtttgc gttggtagtc tgttaagcga ccttttaaat catcaagaat
      481 aatgtttttg gcgtttagtt gatggcgtaa gttttcaact tcaacagtca gttcaataat
      541 ttgatcttca gtattcataa aatttccttt tggagggtta aacaatatct aaaacataac
      601 caaaattcga ctgcttgtct atggggatag ataagccgaa atcaacgtaa agaatgttaa
      661 tagagccttg gggaaggcgt aggggaaata atgaatttag accacacctg tacaaattgc
      721 aaaagtaaaa atttacgggt tcgtacatct gaaaaaatcg gtttgctgac tattcaggct
      781 gttacttatt gtaataactg cggcacagag caacttgtgc aaagtcaaat tatccgtgtt
      841 cgcacaccga tttataaaga gcgaccggaa gcaatgcgta ttaataaatg cttgatggaa
      901 gccgatttga acacgccgga tttgttcgat ggcgttgtgg cagaccaacc taagcaagac
      961 taatcccaat ttttaaacaa tcgtcaaaat aagccttatt tgcatagggc gagatttttg
     1021 caccctaaat tcaggaattt gaacaatgag taagcaatta tattaccgac acaaatcacg
     1081 ttggaacaga cttaaccgcc ttaagaagat gaataaacgt cgccttaatc tgtttttgca
     1141 agaaaagcgg gtggcgaatt tagaaagccg gttagctgat gaagtagagc tggcaaagct
     1201 gaatagtgag cagattggcg atttactgca agcgttggag ttaaaagtga atcggttaat
     1261 tcgccaaaat gaaaagctga aagcccgtgt gattaagctg gaaaaagtca aacagaccca
     1321 aaagcaaggt ttgtttgcaa tgtttaaaaa ggtgttgggt agcaagggta atccttagta
     1381 agaggtagat atggatttcg tggcaacgta tcaaaagata cgcattaaca ctaatcacaa
     1441 gcaatttact tgcaatcact taggcgagat ttgggggaag gaaaacgacg attttaaacg
     1501 tttcttacta cgagtcgcat tcttgcagga taaccccgag ccgaaacctt ggggagcgta
     1561 ttccccacaa gaaaaacgcc ttttacatag ttttagcttg tggttagagc agatagcaga
     1621 ttttcagcga gtaatgaaaa gagaatcaaa actgcgtgaa aaacatatta acgcaccgga
     1681 ttagaaggag taaatatgag ccgtaaccgt gaattgtgtg agttttttca caaactgtgg
     1741 tgcaaaaccg gtaatcgcta tgcttatcgc cggtatcaag tgttttttca gcgttatcaa
     1801 aacgaatgtt tagtgaatga gtagagggta gaaaaatgtc attaattact gtgaacgatt
     1861 acaaaatcaa gaaagatatt ttagatgcag acggcaagcc gtgttatcag ttgtatcaag
     1921 gcgaagagct attgcgtgat accaccaatt taagcgaaat catcgcttat atgtttattc
     1981 gtgccgaaga taaaccgttt gatgagttgt ataaccatat catcaaccaa gaagcaggag
     2041 ctaaaacaga tattaaattt acggtaacgg tgagatgagc cagattacta aatccgctta
     2101 cacacatatt cacccaaact ggcaagcccc gagaggtaac acttaccgga ttgagcgata
     2161 tgagctaaaa cggcggtatg ccttattttg taatggtgag agggtagttt tatataaaga
     2221 cccaacacac cccaataaga acgtagagag ccatatagaa agtgatgttt tgttgttatg
     2281 gctactgaaa aatgaattag ggtggagcgg taatattaaa gagccgttaa gccctcaaga
     2341 tgttgagaat atccgcttgt tagagcaagc attttgttta acttataacg gaactttcat
     2401 taaatgaatt atcagaatga gattctatct gctacagagg ctttcgcaat aggtgtttca
     2461 ctcccacctg ttgccggtgc ttctgcttgt gcattagagc ttcattctga tcgtttatat
     2521 caagcgttca aacagcctta cacttcaatg gtccagcaag aattattctc gaaagaccct
     2581 attcacgaac cgttacgcca atcttatttt gagcgtttgc ctcgtgcctt agcagagcat
     2641 ttcggcagac agtataagca aaagctacat taccaaagcc aatacgacac agcagactgg
     2701 ttcaaagcgg aaatggcacg caaaatgcca cgcattgagg cagttattag ccagtattgc
     2761 gatgtattcg attttctgaa gcaatcccat caagatttag attttttagc tgaattagat
     2821 agtaatgttt atttcggtgc cggtgttgat acgcaacaag cggtacaaaa aattaaacaa
     2881 gatgccgaag tgaaaggtat tcaactgcct atgcaccttt gccgtttaga gaatagctct
     2941 cgctatttaa aagctcacgg cattcgcccg cttgcttacc aaaccgaaga gcaaatcaaa
     3001 cagcttgcct taggtattgc ttatcgtgtt cgccaaattc agcaagataa catcgagcag
     3061 aatatgcaca aagcgacaga tggcgacaca gcctatagtg tgttgcttga atgctatcgg
     3121 gcaatgatgg gagaggtaaa taagctcaag attgattcgc cttatcagaa aaaagcgaga
     3181 aagggtagat taactgaaga ggaaattacc acaggctttt taaaaatgac ctgtgaaaaa
     3241 tggtggacta gaaagttatc taaaattgcc gaacagatga aagagcattt agctattgcg
     3301 tgcggtatgg tgaatatgct ttcgccttac tgttcaaatg ctcgcttgaa agcgtttgag
     3361 gctcaacgca aggcgaatat tgattatttg aaatcaatga tcattgccaa tatcgccgag
     3421 ccggaagagc aactttcatt atttgaaacg tggttgaagt ctgcctctaa cccgaaaatt
     3481 aaacgccttg aattactcac tcgtatgaat ggatttgagc gttatgcaga taagcaaggg
     3541 cacgaggggt ggtttattac cttgactgct ccgtctaagt atcacgcaat gctttcaaga
     3601 accagtagcg tgaacccgaa atggaatgga gcaagccctg cggaaacaca ggtttacctt
     3661 gtgaatactt gggcgaaaat ccgtgccaaa ctcaaccgtg agggcgtaat ggcttacggt
     3721 tttcgagtgg ctgaacctca cgctgacgct accccacact ggcatttaat tctattcact
     3781 cgtccggaag atatggaaaa gcttcgccgc gtgttcttga gttatgcctt agaggtcgat
     3841 ggcacagaag ccggtgcgaa aaaataccgt tgcaaattca agcgtattga gaaagagaaa
     3901 ggctcggcaa cgggctattt agtgaaatat gtttctaaaa acattgacgg ttttggaatg
     3961 gacggcgagc tttcagacga ggcaaatatt caggcgaaag agaatgccgc tcgtgtagga
     4021 gcgtggtcta gcgtttggtg tattcgacag ttccagcagt taggtaatat tccgatcagc
     4081 ttatggcgtg agttacgccg tttggggagt gtagagcaag aagatgaaac tttagagaaa
     4141 ctccgtgtga ttgcagatag cggtgagtgg gacgttttca ccgaagaatt aggcggtgcg
     4201 ttggttaaac gtgccgattt agttgcacgt attacttata ccgaacgcaa aagcgaaacc
     4261 ggtgaggcgt tatatacgat gtatcaagag ccatcattaa aagtgagcgg cattattaac
     4321 attaaaaacg gtgtgcagat taatacacgc ccgaaagagt ggagcattca acttaaacct
     4381 aaaaactggg aggagcaaca attacagaaa aaattagaaa atgcaaccga aacggaacga
     4441 gcggaggtta aacgtaaata ctacgagaag ttagggttta acgaagaggc tatcgcttta
     4501 ttaggggagc ttgctccccc ttggacttgt gtcagtaact gtacggggtc aaaaaataat
     4561 cagattagtg aagaggctcg aaattgccta agaaatgaac tgattacaat gcgaggacgg
     4621 gttactgaac atcaaataga cgatttacta aacggcaagc ggttaaaaat ttggggaaat
     4681 tcgcaaaaaa caatgtttgt gagttatagc cgtgggcgtt taattgagca tattgttgat
     4741 aattatgaga gttttttgaa ttaggatatt aagaaaatgg ttaaatttat tcgtttaaat
     4801 ttgattaatt atttcattga gaaagatgaa tatggagaac cggtgcgttg cagagcgttt
     4861 cgttatgatg agattattca aactaagttt attgaaggat ttcgagaggg agagatacca
     4921 gctgatgatt atggatttga agattggaat ggttcggttc tgattttaaa tgaagaagga
     4981 cgtaaatatt ttgagaacta tctttttgat gtaaagaaga attattgtag agcaagggat
     5041 aactatgtat atgtcttgga aactttagac gaaattgaaa tgaagttagg attattggag
     5101 gcgaaataat gaacttagtc acattagtcg gacgtttggg gcaagaccct gatattagaa
     5161 caatgcaaaa tggtgagaaa gctgcggctt tatcggtagc gacctctgaa aagtggacag
     5221 ataagcaaac aggtgtgaag aaagaaagca ccgaatggca tagggtggtg ctttatcgcc
     5281 gattagctga aatcgccgaa ttgtatgtaa aaaaagggca tttggtatca attatcggga
     5341 aaattaaaac ccgaaaatgg acggatagca acggtgttga gcggagtatt acagagatta
     5401 ttgccgagca gatgcaaatg ctcagtagtg gtgagaaaaa tacgccaaat acgccaaata
     5461 aggcagaaaa taaaccgcaa ccaaagcaga aaaatcaaga cgtgatgact gcggacgagc
     5521 agaaagatat tccgcagttt gatgatgata ttccgtttta gggggtgaat aatgagagaa
     5581 tgggaaaaac aaatgccatt tagtgcaaat ttacatataa gacctacagg aaaatttgaa
     5641 gtgaaaaatg taaacataga acaaataatc ggagaacgtg gcaaaaatta cggcaacttt
     5701 gatgatgttg ccacaatgag ccagcagtta aaagcagtgt tgctggatac caatactcaa
     5761 cttaaaccac atcaaaaaga ggcaggcgag atgatctgct tgaaactggc tcgcattttt
     5821 gcaggttgta atccggacta tgaagataac tggcgagata ttgcgggtta tgcggtgctg
     5881 ggagggaaat taaatgaaaa ataaaatggg gagtaaattt atacgagtca gagttgagca
     5941 tccacagcgg aaaaaagaag atattgagct tgtgcaggat gtggttgctt atcatatttt
     6001 taatcttttt aaatttgagg aaagtgggtt acgggggttt agtcagtatg atttggaaat
     6061 tgatgtgaaa gttaagccag tgttagaaca aaaagaaatg cctgtagatg tttggattga
     6121 tgatttaggt ggtaaaaatg gaacaattac aagcggtcag taatgagcaa gtttttgcaa
     6181 aactttgtga ggttgagcgg ttattaaaaa ccaaaggggt gaatgagcat agccgtgaat
     6241 tgtgggattt gggcgatgta gcagcatatt tcggctacac taaagaacac accagccgaa
     6301 gtgttgtatc tagtccacat tttccgaaac cgattgccct tgacggctta cgaggcaagg
     6361 gcaggggggc gaagaagtgg gtatccggtg aagtggtgaa attttgtttg atgtggaagg
     6421 tgaagtgatg ataaaaaaga taattttaga tgcttgttgc ggtagccgaa tgtttcactt
     6481 taataagcac aacccctcgg tattgtttgc tgacaatcgg gaatccctgt atcgaaaatt
     6541 ttaaatgtta tcgaatacca acctatctat gggcataaaa gcggtaaaca taacaaaacg
     6601 cattggctgg catttgtaaa gatggataat aacgattatt tgtaaagtat ttcaaaatac
     6661 aaaagccgat aaatttcatt atttatcggc ttttgtttta tgggttgttt tgcttgaatt
     6721 gttgaatagc ttgaataatc agctggtttt gtggaatgtt gagtttttgg ctaagtactt
     6781 cgatttctgc gatcacctca agcggtagtt taaaggattt ttgctttatt cctcgttttg
     6841 cctcgctttt agcttggatt tcatttcttg acattgccat aatttatccc tattataaat
     6901 tttgttgaag agctgggagc tttcaccccc agcgagttgc ttcagattag taagctgggg
     6961 agctaaggac taataagaag acaactagga taatgtattt aaacattgtg ctatccttct
     7021 tcatttcgta aggtttaagc cttacgctca ctttcaagct gtctcttgaa agtgaggtta
     7081 ttataatgta gggtatccta cattgcaagt aataaataca aaaaagccga taaattttcg
     7141 tttatcggct tttgttttta ttgcagtttg ctcacaagtt ctgaaatatc cgggttatag
     7201 taggtatttt gcaaaatact taaatctcga tgccccgata ctttggcaag ctccattacc
     7261 gtcagatatt tagacaaacg tgtgagtgcc tctcgccgtg tgtcgtgaaa atgcagatcg
     7321 gcattgtgta gattggcttt ttgtttcagc ttgcgaaaat tcgaatcaag gctgcgactg
     7381 gtgagctgga aaacactgtt ttgcttgttc ggttcaagtt gtgccaactg atttaaaatt
     7441 gctattgctt tggttgagag tggcacggtg cgtgaataac cgtttttggt ttgtggcaaa
     7501 aatgcggtgc gtgcctgcag gtttatatgt tcccatttta aaccagcaat ttcacccgct
     7561 cgcattgcag tctcaatcgc aaataatagt gctgctccgg ctctttgttg cattaatagc
     7621 ggtggctggt tagggctgta gccggagaca aaaatcagtt tgtctatctc ctcatcgcta
     7681 tatcggcgag ttcttgctgg tggcgttttg attttttcca gcgtttttag aggattttct
     7741 ttgagataat cccattccat tgcttttgta aagagtgccg ataaagtggc tctttctctt
     7801 gagacggaaa ccggctgcac ttcttgcaag cgttggtttt gccattggcg taaatgctct
     7861 ttggtgagtg ccggtaatgg tatatttccc aagttgctgc cggcaattct tagcaggcga
     7921 tagcgttctt cccttttgcc acgtttggtc ggagtgacct ctttgaggta tttgtcgatt
     7981 aattcggcaa aaagaatgtt cggggtggtg ttatattctc cggcatcaat ttgagcctct
     8041 aaagcgtaag cccagcggtt tgcctctgtt ttggtgctga aagtggcagt tttataaatg
     8101 ccttttttgc ggacttgtgc tcggtatttg ttgccgttct taataatagt agccattttt
     8161 ttattccttt gtgtatgtgt gcagtttaag tgtgcaaatg tgtgcaaagg aatgttaata
     8221 gagatcataa acgatcaata aatatcaagt tttcatatca aaaatgatgt ttttattgat
     8281 gttatgctac acttggggaa gtgttttaaa tcaataagct attgatttat aaggggtatt
     8341 tttggggtta agcctgaatg gggatattca ggcttaaaaa taatggtgcg actagctgga
     8401 ctcgaaccag tgacccccac catgtcaagg tggtgctcta accaactgag ctatagtcgc
     8461 attaacggtg tgcattctat tggaaaaagg aacttagtgc aatatgcttt tggtcgaatg
     8521 cttttatttt agacgctttt gggtaaaaat ttgtttatct tcccaacgga gcatggttaa
     8581 atggcttccc caagcacagc cggtatcaag tgcatagatg tttggacgag tgcatttgcc
     8641 cattaggctt gcccagtgac caaagataat gtttttctgt gtaaataacg gattatctaa
     8701 gtcaaaccaa gccagcagtt cttgaggggc ttgttcaagc ggtaatttac agtcaaaatc
     8761 taaccgcttg tcggtgtagc aaaaccgcat acgggtaaac acattgatga tataacgcca
     8821 acgttcaaca ccttgcaaat cttcactcca gcgttcgggc ttattctcat acatttgggc
     8881 gatgtagtcc gcataattgt cactttgtag caccttttct gcctctttgg cacaagctag
     8941 ggtagttgct aaatcccact cagggctgat tcctgcgtga gtcagcaaaa attgatgttt
     9001 ggggtgatga attacaagcg gttgatttct gagccaattt tgcaaatcga gccgatcttt
     9061 agcctcaaaa atagcatcaa tcttatcatt tggttttacc cgtttgatgc caagcaagtg
     9121 caaatcgtgg ttgcctagca cggttttggc attgtttgca gagtctttca caaaacgtaa
     9181 acaggctaaa gagtcctcac cacgggcgac taaatcccct gttaaaaaga gttcgtcttg
     9241 cttggggtta taattgactt tttctaataa aagctgaaat tcgttaaagc aaccgtgtag
     9301 gtcgcctaca atataagttg ccattgtttc tcctttgttc ccctaaagtt ataaacaagc
     9361 ggttatattt tagagaaaat ttgcaaaatc tcatcaaaat ataaccgctt gaaatttaaa
     9421 tgatatttcc tacgattgag cgggtttcta agcgtacttc ggtgagtttc actttcaccg
     9481 cttgcccgat ctgataggct ttttcacctt taatataaag tgcaagttct tcttggcggt
     9541 attccatttc ctctttgttg tcgtgcaagc tggagaatgg cacaaaaatt tgagcaccgt
     9601 tttttatgac tttcgcacgc aagccaccac gggaaacatc tgcaatttcg cactcaaatt
     9661 cgaccgcttg ttccaccatt ggggcaaggt aacgagcata aagccagtca gcaatatcac
     9721 gttctactaa acggttttga cggcgagctt cttgtaaacg gcttaaaact gattcttcca
     9781 ccgcttggct ttgtttgcca agtaacactt gcttgattaa acggtggttt accatatcgc
     9841 catatttacg gatgggtgat gtccaagtgg cgtaatcggt aatgcctagt ccgaaatgcg
     9901 gggcaacttc ggctttaaat tcagcgaagg ttaaataacg tcgtaaacgc aactctaaga
     9961 atttctctgg gtagtcttga atatcacgtt gcatttggca atagccttct aaggttgcta
    10021 aacgctcggc ggagtagcgt tcggcaagct catcacgatt ttcatcgctg gctaaagttt
    10081 ggagtaaaaa tgattttacc aattcataat ttttcggatc aaaacctgaa tgggtattaa
    10141 atacaccggt tttggcatgt tggcttaaga attttgcaca acaaatattg gcaagaatca
    10201 ttgattcttc gatcatttga ttcgcaatac ggcgatattc aacgtgaata tcttttaccg
    10261 agccatcttc atttaactca aaggtataat cgccttgttc tttgaatagc aacgcattct
    10321 cggcacgcca ttgaatgcgg gcttgagtaa attgatgtag ccactcaatt tgttgttttg
    10381 tttcttcaga ctgaggttgc cacgcatttt ccacgccttc gagataatcg gaaacatcgt
    10441 cgtaagccaa gcgatctttt gattcgaccc aagcagaggt aaaggttgtc tctttaatga
    10501 gattgccgtt taaatcggtt tcaataaagc caacgagggc agggcgtttt tcattcggga
    10561 caagcgaaca gagatcgtct gagagttctc gaggtaacat tggaatgtta aagcccggca
    10621 aatagttggt gaaacaacgc tggcgagcgg ctttttcaat atgggaattt tctgggatat
    10681 aagcggttgg gtcagcaatc gctaccacta aacgccagcc ggttcgcttg ccattttgct
    10741 taattggttc gatgaacaga gcatcgtcca tatcttgcgt gcttgggctg tcaatagtgg
    10801 taaagtaaag atgagataaa tcttcacgag ctaattcatc gtgtaattca tagttttttt
    10861 catttgcgac cggttcacga ggctgttcgt ggcgggcaag tgtgacccac caaggggcaa
    10921 aattatcaga ttctttacag ataaattggg taacttgagc aaagaaaaaa cggtcgtcac
    10981 gcaatgggtg cgtttttaat tgtgcaacca cccagtcgcc attttctaat ttttcagtgg
    11041 cttttttatg ggtatttgcc gggatagttt gcttaatgct tgggtgatca accgcaagtt
    11101 gcaatttgcc ctctttattc aagcgaactt gggcaataaa tctatccagc attggctcaa
    11161 gtagtgaatc aatttctacc tgttctttgt cgccatcacg tttgactacg gctttcactg
    11221 aatcaccgtg cattactttt ttcatttccg caggtggaat aaaatagctt tttttatcgc
    11281 attctaaaaa accgaatgct ttgtctgagg ctttgacaac gcctgcgaca tattctttgc
    11341 ttgcttcaat ttgttgtttg agttgggcta aaaggggatt gttttgaaac ataatttctc
    11401 attttaaaaa taaaaaaagg tgctatcgtt gcaccgaaaa aaacaatggc attataacgg
    11461 atttgaacca agttcagcaa ataaatgctg ttgctataac ttataaaggt tggtagaata
    11521 taatccattt aaaaataatg gagacttttc aatgaaaaaa ttacttgcaa ttgcaacagt
    11581 attttcttta gcagcctgtt ctactcaaac acttgaacta tctcctgcta aggaagctca
    11641 atatgatcgt gttcaacact tctttgtttc agggcttgct caaaaacaag agatagatgc
    11701 agcaaaaatt tgtaatggtg cagataaggt aggtaaggta gaaactgaaa ctactttctt
    11761 taatggcttg ttaggtacaa ttacttatgg tatctattca cctcgccaaa tccgtgtata
    11821 ttgtaactaa tcctagtaat ttaaggagtt gaaaatgaaa aaattgcttg ctatgtctgt
    11881 attaacagcc ctgctgacta cagcatgtac aacacaaact gcccatattg gcggcaaagt
    11941 tactgataat attaaaccaa ctaagagtgt aactcagtcg ttctttatag gtgggattgg
    12001 gcaagaagaa acattgaatg ttgtagaggt ttgtggttcc aaagataaag tgcagcaggt
    12061 tgaaacagta ctttcaggtg gggacattct attaggtctt gtgactatcg gtatttatac
    12121 acctcgtact gcaaatgtat attgtaagta a
//
LOCUS       DANLXK010000076        12109 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.076, whole genome shotgun sequence.
ACCESSION   DANLXK010000076 DANLXK010000000
VERSION     DANLXK010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12109
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..395)
                     /locus_tag="PXD88_001722"
     CDS             complement(<1..395)
                     /locus_tag="PXD88_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281280.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSE"
     gene            complement(392..1075)
                     /locus_tag="PXD88_001723"
     CDS             complement(392..1075)
                     /locus_tag="PXD88_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL6281281.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            complement(1133..1321)
                     /locus_tag="PXD88_001724"
     CDS             complement(1133..1321)
                     /locus_tag="PXD88_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL6281282.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            1446..2102
                     /locus_tag="PXD88_001725"
     CDS             1446..2102
                     /locus_tag="PXD88_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281283.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            2114..2488
                     /locus_tag="PXD88_001726"
     CDS             2114..2488
                     /locus_tag="PXD88_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281284.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            2640..3377
                     /locus_tag="PXD88_001727"
     CDS             2640..3377
                     /locus_tag="PXD88_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6281285.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFNYDIKRNQYVAYWQSVLKPIFGHRFSNFKDLYNT
                     LKQIMRFRNRLYHQEVVWNKRIAKKPTHALENLEKTYKQFELALQKIAPERFAFRQLS
                     QALIWQRQIFFDQQIFEAEIVILPQHI"
     gene            complement(3413..4009)
                     /locus_tag="PXD88_001728"
     CDS             complement(3413..4009)
                     /locus_tag="PXD88_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281286.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
     gene            4655..4840
                     /locus_tag="PXD88_001729"
     CDS             4655..4840
                     /locus_tag="PXD88_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281287.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            4824..5021
                     /locus_tag="PXD88_001730"
     CDS             4824..5021
                     /locus_tag="PXD88_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281288.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            5024..5998
                     /gene="ssb"
                     /locus_tag="PXD88_001731"
     CDS             5024..5998
                     /gene="ssb"
                     /locus_tag="PXD88_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6281289.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(6085..6161)
                     /locus_tag="PXD88_001732"
     tRNA            complement(6085..6161)
                     /locus_tag="PXD88_001732"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6125..6127),aa:Arg,seq:tct)
     gene            complement(6186..6262)
                     /locus_tag="PXD88_001733"
     tRNA            complement(6186..6262)
                     /locus_tag="PXD88_001733"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6226..6228),aa:Pro,seq:tgg)
     gene            6432..7292
                     /gene="folD"
                     /locus_tag="PXD88_001734"
     CDS             6432..7292
                     /gene="folD"
                     /locus_tag="PXD88_001734"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL6281290.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
     gene            7406..8857
                     /gene="thiI"
                     /locus_tag="PXD88_001735"
     CDS             7406..8857
                     /gene="thiI"
                     /locus_tag="PXD88_001735"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL6281291.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVDEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(8902..9609)
                     /locus_tag="PXD88_001736"
     CDS             complement(8902..9609)
                     /locus_tag="PXD88_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL6281292.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(9677..10651)
                     /gene="pfkA"
                     /locus_tag="PXD88_001737"
     CDS             complement(9677..10651)
                     /gene="pfkA"
                     /locus_tag="PXD88_001737"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL6281293.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(10758..11954)
                     /locus_tag="PXD88_001738"
     CDS             complement(10758..11954)
                     /locus_tag="PXD88_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL6281294.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         3746 a         2326 c         2475 g         3562 t
ORIGIN      
        1 ttttccgagc tttctcggaa atttttccga gtttgttcgg agttatttcc gatactcgga
       61 tttttttccg actcacggat cggctcgaat ttattccatt cacaaccttt ttcggttaaa
      121 cggacataat ctttaccgtc cattttgaag tggtcgataa tgcctttttc tttcaacacc
      181 ttatattggc ggtaaactgt atcttctttg ctaaaaaccg caggtaactc ttcgcaaacc
      241 ttgctaaatg acatccagta ataggttatg ccgtcaataa ccaccgcttt cgcccaactg
      301 gaggcttgat tgattaaatc gaccaatgcc ccttgtgtaa tattgatttc ccattccact
      361 aagcggacat tgtttatggt tgatgtaaat ctcattgtcc taactccgat gcgtaacgtt
      421 gagcaatcca ttcaatccct ttggcggtta ctctcgtttg ggtaaaatta tgaccgtgtt
      481 ctgccgtgcc ggtttttact gcaaaaagct gtttagcttg tttatcttga taagggagta
      541 ggtttcctga ttggcgataa agaactcgat atcgttctaa acattcaatc aaccgctttt
      601 ctggaaaatt gagtatcttg gcggtttctc gcaatgattt agtcgttccc acctcaacat
      661 aatgctccac aaatgcgact ttcggggctt gaatggctaa ttgatgattc tgctgctcaa
      721 tcacttcttg ctgttctgcc gccaaccgta gagcttgaga gaaagattgt ggaatacctt
      781 gtctgctttc tagctcttgc caacggtcga taattttctt gcgaagtatc acgctatagc
      841 cggaaattag ggtaagggtt aaatcgtaag gcaatcgaaa ttcccggtat gtttgcccat
      901 tttgagggtg tgtccaaaaa tgggcatacc cctcggcagg aatatctaat tgactaaaca
      961 tcgcttctat atcacgagta acgtgtcgat gttctttttc gcacaactca gcaatctcac
     1021 gactactcat cgtaatgctt gcttttggtg ccgaaatgtt taataattga ttcatcgaaa
     1081 atacctttcg tgtttaatta tgtatgaaag ccaccgttac agcggtggtt ttttatttgc
     1141 ttctatttct ataaagtgag tgtttgacct ttaacttgcc ggcagtgatc tcttgtaatc
     1201 tgtacgcatt tttctcagga ataatctcgc cccattgaga aacagcagat acactaatcc
     1261 ctaaagttgc cgccactttt tctagagttc cgaaatgttc gagcacatca tcttttttca
     1321 tattttctta attcctttct tgaattttat ttaagacctc ttaaatatac aattaaagga
     1381 aacttaagtc aataaatgtt aagataactt aacagcaact ttatttttac ctttaagggg
     1441 atactatgaa tactcagacc ttgggcgata gaattaaaag ccgtagaaaa gaattaaaat
     1501 tgacacagaa agatcttgct actgcgttaa aaggggtctc acacgttgca gtatctcaat
     1561 gggaaagtag tacgactaag ccaaattcag agaatatttt ggatttatct acagtattgc
     1621 aatgcgatat tagttggctc ttgcgtggta atggagagtc taatgttcta cctgctagcc
     1681 tcggtatgac taaagtccca ttaattagct atattcaagc cggacaatgg acgggaattg
     1741 acgattttcg tgaaacctgt ggggattatg aatatatcct aactgatctt gaggtgtctg
     1801 aagatgcttt tgccctagaa atcaaagggg actcgatgga gcctgatttt attgaaggag
     1861 accgagtaat tattgatcct gatgtacaac ctcacgccgg tgagtttgtg gcagcaatta
     1921 atggcgatta tgaagccact ttcaaaaaat accgtccgtt agaagactta gacgaatacg
     1981 gaagacaaca ttttgagctt atcgctctta atccggatta ccataaatta tcaacgctaa
     2041 agcaagaaat cagaattatc ggcacaatgg tagagcatcg tatttatcgt agaaagagat
     2101 aggaattgat aatatgacag aatttaaaga tgtaaaacag gcgattgtag aagctcaatt
     2161 agcttcgaca cctaaagata aagtcgttaa tgacataatg aaaggaagtg cggaactgct
     2221 ttcagcaaat gatattatca ataggttagg tattggggca gatgagtttc aagagttggt
     2281 taatttacct aaccattatt tgcgtataaa tggagggtta ggtgctgctg tgtataatac
     2341 aagaagaatg tttgataccc atgttgagtt agtcaatcaa gagttagaaa agaatatttc
     2401 atttcctaaa cctgatttat atattttggg gaaagctcgt tggaaaaaag aaacatttaa
     2461 gaaatggttg gaagaacagt gtagataaag aaaaggtagg ttaaaaaacc taccttttct
     2521 gaaccgcaaa taagcgattc tcacacttta caaagcaatc cagctcctac gtctggggct
     2581 tcgggtccgt tgccagtgca agtattatta cattaaacta aacttgagta aaggaaaata
     2641 tgttgtccaa acaagtgcta agtatttcag aaagtcggct gagtacatat ttattttgct
     2701 ttttccgaaa tgatcccaca aaacagaaag aagctattgc aatttatacc gccttgcaac
     2761 atcgaacagg aatttatttt tcattgattc aagaaataga ggtggcacta agaaatgaag
     2821 tcagccagtt gttacgcttt gctgcaccta atcataattt atacgaattc tttcattttc
     2881 tagcgaacga tagtaatgct cctcttaatg cagaatctaa acgccagcta caaaaagcca
     2941 ttagtgaatg cggacgtaac tataatgaaa atgacataat ttctcatatt tcttttggat
     3001 tttgggtaaa tctgtttaat tatgatataa agcgtaatca atatgttgct tactggcaaa
     3061 gcgtattaaa gcctattttt ggacatagat ttagtaattt taaggattta tacaatacat
     3121 taaagcaaat tatgcgtttt agaaatcggc tgtatcatca agaagtggtt tggaataagc
     3181 gaattgccaa gaaaccaacg cacgcactag agaatttaga aaaaacttac aagcaatttg
     3241 agttagcact acaaaagata gcacctgaac gatttgcgtt tcgtcagctt tcacaagcac
     3301 ttatttggca acgccaaatc tttttcgacc aacaaatttt tgaagctgaa atcgttattt
     3361 tgccccaaca tatctaagca aaaagctacg catctatgta gctttttctt aattaaaaat
     3421 gtttccactc taacccttgt gtatcaaagg taaattgccc tttgccataa ttgtaaaaac
     3481 tcgcctctac aattagtttt ttcgactttt tcaacttatc tacaaaggtt ttcattgctt
     3541 ttgcattttc aatgaaaagc gtatcattgc tgccaccatc cgccccaatc attcgataac
     3601 tttccaattt accatcatca aacttcacag taattttaca gctctcaatc atacagccat
     3661 taaattgacc gtgtacgcta aaaattacat cattgccata tttagggtct ttgcgtaaca
     3721 ttaaattcat tgatgatgaa ttatacggga aaccaaaatc tattgtgtta gttgatctaa
     3781 ttttagcaaa gtaagtcgtt gcattacgca attcatcttt cttttgttca tattcccaat
     3841 tagacttttc atcggtagct tcatctttac cagtatcttt tttcacaaag acactatcat
     3901 aacattctaa gcgttttgca ctatcttcaa tcttagagca actttctcca gtttcgttag
     3961 ctaaagcaaa agcgggcaaa caacataaag tcatcagtag ttttttcata taacctccat
     4021 agaaatccct tcttattttc tcaaaagcgt ggttttcggt ctgtgatcaa gctcgcaatc
     4081 tcaataatta tattttaatg gtttaaaaaa caatcaatta agaaatcata actaattgaa
     4141 atttaagaaa tcttaaaaat acttattaaa taagcttaaa ttttgattga cttgtaattt
     4201 aagttttctt aaacttaatt catcaaaacg agctacggct caatgctctt taacaattcg
     4261 gtgcttgtgc ggacgatatt aacaacctcg ggcagttgta aagtaatgct ttataactca
     4321 gtaaggttgg ttagaccctg acatacaaat ttgaacgact tgccaaaaag aggtggcaag
     4381 gtttaggcaa cacactcgca aggtgtggag agctgaaaag gcaacactgg tatcagtcct
     4441 aagcaatcac gcttatctca agtttgagta agtacggata caagcagcac ccgacggaat
     4501 ggcgaaagcc gggcgggcga cggcgtgggc agacacgcat ttattccaaa gctcatttca
     4561 ccaagtgtgt ttcggaatac ccacaactag acgcaagtcg ctccatttgc ccaccgtaaa
     4621 acgtgggctt tttttaaccc taaaggacaa tcctatgaac aaaatgaaac aacttgcccc
     4681 atttgccttg ctaattttgc tattaggcat tgtcgggcga atggattatg acgaccacat
     4741 acaaatgcaa cgttacaaat gcgaacgaaa tcaaggcttt tggcaaatgg aaagcaacgg
     4801 caaccaatac tgcggaggga aatatggcac gaaaaattga tgccggtgtt gagattgttg
     4861 aggtagataa acgatttatc gccaagtttt tttatgacgg caaattacag cacacaacct
     4921 atccacaata caaccgccaa aacgcaatta tgttgattaa ccgcaaaatt gagcggttca
     4981 acattggcag agacaaacca atcaaacttt ataaggaata acaatggcag gaattaacaa
     5041 agtgattatt gtcggtcgcc taggtaacga cccggaacta cgaacaatgc caaatggcga
     5101 ttcagtcgcc aaaatcagtg tagcaacttc aaccgaatgg acggataaaa cctcaggcga
     5161 gaaaaaacaa gccacagagt ggcatagcat tatcgccttt cggaatttag ctgacattat
     5221 cggcaaatac ctgaaaaaag gctcgcaagt gtatgtggaa ggcaagctac gcactcgcaa
     5281 atggcaagcc caagacggca cagaccgctg gacgaccgaa atcatcgccg atcagctaca
     5341 aatgctcggt agctcaaaca gcggaaacag caataataat tgggcaaccg aaccggcagg
     5401 aaacccacca ccaaccaatc catataacca cgtaatgacg gattcagaat cacgagattt
     5461 tgatgatgat atccgggttc gttggattac caaagaacaa gccaagcagt ttattaataa
     5521 tattagtact gattggatga aaactatctg ctcttttgct ttattaacag gagcaaggcg
     5581 aacagaaata ctttctatga cttgggataa aatagatttt atccgtaaag tagcgattgt
     5641 ttcgaatgat attgccaaat ctgaaaaagc gagatcgctt ttacttaatg atgatgcaat
     5701 tgaattatta caaaagcaga gagggaaaaa tcctaaatat gtttttgtag gaagcaaagg
     5761 gcaggcatta caagatatta accgcaaaat atttaacaaa gcgactgaaa aatgtttatt
     5821 ggttgatttc catttccatg atttaaggca tacttgggcc agttggcacg ttcaggccgg
     5881 cacaccatta tttaccttaa aagaattggg tggctgggaa acattagaga tggtaaagaa
     5941 atatgcccat cttaatgcag accatttact caaccacgct aactcagtta aattctagtc
     6001 acaaattagt cacaaagtat ttttgacata ggaaattaat aactgatatt taaatgtaac
     6061 tatttgaaat ataagggtaa ttaatggcac gccctaaagg attcgaacct ttgacccacg
     6121 ccttagaagg gcgttgctct atccagctga gctaagggcg cagatgaaga taatataaaa
     6181 agaagtggtc ggcgagatag gatttgaacc tacgacccac tggtcccaaa ccagttgcgc
     6241 taccaagctg cgctactcgc cgacataaga tgttgttgat tatagatttc tttgcacaac
     6301 agtcaatctt tttttgtgaa tgtcggctta aatgattgaa gtttatccgt tattcaaaat
     6361 tagcttatca aaaaggctat tttttgagag aatgacgaat gttttgccaa gtgatatttc
     6421 gggaggtagt aatgactgca caaattattt cggggagtga ggtttcttca caaattaaaa
     6481 aaaaggtgag tgagaaaatc gctcattatc ttgaacaggg taaacgtaac cctggtcttg
     6541 cggtcatttt agtggggaat gacccagcct ctcaagtgta tgtggggagt aaacgcaaaa
     6601 gctgtgccga aattgggatt gcgtcgaaat cttatgattt acccgaagaa accacagagg
     6661 ctgaattatt agcactgatt gaaaagttga atcaagatga ttcggtcgat gggattttag
     6721 tccaattacc gttacctaaa cagatcgatt cgactaaagt gattgaagcc atcttaccac
     6781 ataaagatgt tgatggattc cacccttata atgttgggcg tttatctcag cgtattccca
     6841 ctttacgccc ttgcacgcca tacggtgtga tgaagttgct tgaaacaact ggggtagatt
     6901 tatatggtca acacgcagtg attgtaggtg cgtctaatat tgttggtcgc ccgatggcgt
     6961 tagaattgtt gcttggtggt tgtacagtca cagttactca tcgctttacc aaagatttag
     7021 agcatcacgt tcgccaagca gatattttag ttgtggcagt cggcaagcct gaatttattc
     7081 ccggggagtg ggttaaagac ggtgctatcg tgattgatgt agggattaac cgtggagcag
     7141 acggcaaact aaaaggtgat gtagagtatt cagttgcctc acaaaaagcg gcatttatca
     7201 cccctgtccc cggtggggta ggcccgatga cggtggcaat gttaatgcaa aataccttgc
     7261 agacgtatga aaaccattta caagcggtct aattttacgg atattttgca aatcctcggc
     7321 attggtcgag gatttctttt tctgggcttt ttcagcagaa aaggctaaaa tacttgccat
     7381 ttttattaca cgatccttat taaatatgaa atttatcatc aaacttttcc ctgaaattat
     7441 gattaaaagc gactctgttc ggaaacgctt tatcaaaatt ttaacctcaa atattcgcaa
     7501 cgtattatta aaagagactg aaaatgtgtc tgtggttcgc cattgggact ttattgaagt
     7561 tcgggcgaaa gtggacgaag aaacggcatt agtgctggat ttgcttaaac gcacgccggg
     7621 tattcaccat attttagaag tggaggaaac cccttttacg gatatgcacg atatttttga
     7681 gcagacttat gccgcagtga aagctgaact agaaggcaaa acgtttagcg tgcgggttcg
     7741 ccgtaaagga aagcacgatt tccgttctct tgatgtagag cgttatgtcg gtggtgggct
     7801 gaatcagcgg attgaaacgg cgaaagtgaa attaaccaac ccagatgtta cggtcagaat
     7861 tgatattgaa catgataaaa tgttgctgat taaagctcgc cacgaagggt taggcgggta
     7921 tccaatcggc acacaagaag atgtgttgtc attgatttcg ggtggttttg attcgggtgt
     7981 atcgagctat atgctgattc gcagaggttc tcgtgtgcat tactgttttt tcaatttagg
     8041 tggtgccgca cacgaaattg gcgtgaaaca gatggcatat catatttgga gccgttatag
     8101 tacctcgcac aaagtccgtt ttatcgccat taattttgaa aatgtagtgg gtgagatttt
     8161 agaaaaagtt gataacggac aaatgggcgt ggtattaaaa cgtatgatgg tgcgagcggc
     8221 aagccgtatt gccgagcgtt ttgatattca agcgattgtg accggtgagg cgttggggca
     8281 ggtctctagc caaacactga ctaatttacg tttaattgat aaggcatcag atacgctggt
     8341 attacgtccg ctcatcactc acgataaaga gcagattatt gcaatggcaa aagcgatagg
     8401 cactgacgat attgctaaat caatgccgga gttctgtgga gtaatttcta aaaatccgac
     8461 ggttaaggca atcgaaacta aaattttgga agaagaaggc aactttaatt ttgaggtact
     8521 agaacaagcg gttcaaacgg cgagttattt agatattcgt gagatcgctc agcaaaccga
     8581 aaaagaggtt gtttcggttg aaaccacaac agaattgagt aaaaacgatg ttgtgctaga
     8641 tattcgcagc ccggaagagg ttgatgaaaa accattccgt ttagacgggg ttgaagtaaa
     8701 agaactcccg ttttataaac tttccagcca gtttagtacg cttgaccaaa gcaaaaccta
     8761 cttgctctat tgccaacgtg gggtaatgag taaactgcag gctctttatt tgaaagagaa
     8821 tggctacagc aatgtaaaag tgtttcgagt gaaataatgc ctctttgatt gcaccttaat
     8881 gattgattaa ggtgcaattt tttaccaaat aaggcttgct aaaaagagta agatcacagg
     8941 aaattcaagc attccaactt gtttaacatt ccagccaaag cttggcacaa taatggctcg
     9001 ggcagttgca attaaataag caaaaaagac cgcttgtaga gagcagagta tgtaaagcat
     9061 tgctaaaacc aaatgtattg caatactgat ttccatataa attgggtttc ttcgctctcg
     9121 caccatactc tttatataga aagtcgtagc aataaaaaat agggtagggt ggagcagaat
     9181 ctcaaactga tattgtttcg ttaccagata ataagctgcc attcccatta tgccaaaggt
     9241 tagaatgccg gcaatatcat tccataaatt gcgttcatct ttttgtttgg cgtagtgaac
     9301 ttgcactaac ccaagcggta gaattatcgg taaaaattgc aaaatcgaag gctgagcgta
     9361 gatcaaaggt aatgcaaata gaatgcttaa gccaaagtag attttcgccc attttttatt
     9421 gcgttcagtt ggctttttac tgaaaagtga gagaaaaggg taggaaaaga agtagagaaa
     9481 cagccacgac agcccaaaga aaatatgcaa agtgctaaaa ccactttcaa taacggcgta
     9541 gagaaacggc aacattgcca ttgctaatgc accgtgttgg ttggatataa cgggtttttc
     9601 tttgaacatt caatttccct cttaatgtgg caaataaaaa ggcgactaaa cagccgcctt
     9661 taaattgtaa gaaaagttag aataattttc tagaggcttc aaataattct tctttgaacg
     9721 gacgacgcat attattgatc gcatcaataa tatcgtggtg aaccaactgc tcgttttgaa
     9781 taccgacaca gtgaccgcca aagccttgca gtaataattc caccgcatag acgcccatac
     9841 gggaggccaa aatacggtcg aaggcacaag gcgaaccacc acgttgaata tgacctaata
     9901 cggttgcacg ggtttcattg ccgaaacgtg cttcaatttc tttcgctaat gcgtgaacat
     9961 cggtcatcaa ttctgtaatt gcaataattg aatggcgttt acctttgtgg aaaccttctt
    10021 caatgcttcg cattaatgca tctttatcta agcctttttc cggtacgatc acatattcgc
    10081 aaccaccggc gagggcagca cttagggtta aatcaccaca gtggcgaccc ataatttcca
    10141 caatcgaaat acgttggtgt gaacttgaag tatcacgcag gcggtcaatc gcatctaatg
    10201 cggtttcaag ggcagtttga tagccgatgg tgtaatccgt tcccacaata tcgttatcaa
    10261 tcgtacccgg aataccgata caagggtaac caaattcttc ggttaataat ttagccccca
    10321 tataagaacc gtcgccacca ataaccacta atgcatcaat gctgtatttt tttaaggttt
    10381 cgacacaatg tttgcgaact tctggtcttt taaaatcagg gaagcgggca gaacctaaga
    10441 atgtaccgcc tcggttgatg gtttcagaca cggaacggcg gtcaagtggg atcactttat
    10501 cgtggtaaag cccatagtag ccgtcttgaa taccacaaac ctctaaacct tcattaagtg
    10561 cggtacgaac cacaccacgg attgccgcgt tcattcctgg tgcatcacca ccactggtta
    10621 atactgcaat ttttttgatt tttttactca tttaaaaaca ccttgttgat aaattaaagt
    10681 taaattggaa actggtgcaa ggttacaata ttcagccttt tcgttctact aaaaaatacg
    10741 tatttttttg atttagctta gctttcttgc aaaatttcaa gggtaaaatc tagagcgttg
    10801 aaaaaatgct caacatcttg ttgattattg taatgggcaa gtgaaagtcg aactgttccg
    10861 acctcttcta aatggcgtaa ataaggcttg gcacaatgct ccccttggcg gatcgcaatt
    10921 ttactttggg ttaagaaagc ggcaatatcg gcagggtgct gatttttcac cacaaagcta
    10981 atagtcggtg tattttgttg cccgataatt tgcaaatttt gataagaatt taaccgcttg
    11041 caggtgtatt cagccaagtc ataaagctga tgattaagag cgacaaaatc ccatttttcg
    11101 agccaagcta gcacttgccc aaagccgata atgccggcga tattcggcgt gccagcttcc
    11161 aagcgataag gtaactctgc cacagttaat tcactttccg taatgttttt cagcattttg
    11221 ccgccaaata caagcggttg aatttgctcc aaactttgca atttgccggt aagcacgccc
    11281 acaccgtttg gaccatacat tttatgggcg gaaaaagcgt agaaatctgc atctaatttc
    11341 tgaacgtcca cttgctctga gcaaactgct tgagcaatat ctaacacaat tttagcagag
    11401 caagattggc ggataagcgg gattatttgt tccgctggct ggcgaactcc tgttacgtta
    11461 gaaactaaat taaaggcaac aattttggtt ttttccgata acgcattttt aagggtttca
    11521 agctcaattt catacttatc attaagtggc aacaccacga gtttcgccct tgtacgctgt
    11581 gccaactgct gccaaggaat aaaattagcg tgatgttccg ccactgaaat tacaatttca
    11641 tcgcctgctg caatttgatg ctccaagcca taagccacgg tgttaatact ttgggttgta
    11701 ccgcttgtcc aaatcaccgc ttcacgagtt tccacattga aacgttttgc gactaaatct
    11761 cgagctaatt catattgttc ggtttgtggc aaatcgtact gactgcgatg caccgacccc
    11821 gcagaagcgt aaaactcact tgttgcttca atgagtacat caggtttcag cgttgtagcg
    11881 gcagaatcta aatacgtcca tccgtcagat ttttcaaaaa aagggaaatg ggtgcgaaat
    11941 tgggtgttaa gcataagtta attcctaaga gttgtggaaa attgagttac caagaaaata
    12001 cctattataa aggaatgttt tgaggtaaga agcatttcaa gaaataaata gatttatttt
    12061 gttatctttt tgttaaattc gtgttgacta ataaaattat ttttataaa
//
LOCUS       DANLXK010000077        12076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.077, whole genome shotgun sequence.
ACCESSION   DANLXK010000077 DANLXK010000000
VERSION     DANLXK010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            30..245
                     /locus_tag="PXD88_001739"
     CDS             30..245
                     /locus_tag="PXD88_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL6281295.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     HEEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(304..1461)
                     /locus_tag="PXD88_001740"
     CDS             complement(304..1461)
                     /locus_tag="PXD88_001740"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL6281296.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(1583..3649)
                     /gene="prlC"
                     /locus_tag="PXD88_001741"
     CDS             complement(1583..3649)
                     /gene="prlC"
                     /locus_tag="PXD88_001741"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL6281297.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            complement(3780..4520)
                     /gene="pflA"
                     /locus_tag="PXD88_001742"
     CDS             complement(3780..4520)
                     /gene="pflA"
                     /locus_tag="PXD88_001742"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL6281298.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            complement(4769..5794)
                     /locus_tag="PXD88_001743"
     CDS             complement(4769..5794)
                     /locus_tag="PXD88_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6281299.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(6029..8353)
                     /gene="pflB"
                     /locus_tag="PXD88_001744"
     CDS             complement(6029..8353)
                     /gene="pflB"
                     /locus_tag="PXD88_001744"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL6281300.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(8443..9267)
                     /gene="focA"
                     /locus_tag="PXD88_001745"
     CDS             complement(8443..9267)
                     /gene="focA"
                     /locus_tag="PXD88_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL6281301.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
     gene            9468..9962
                     /locus_tag="PXD88_001746"
     CDS             9468..9962
                     /locus_tag="PXD88_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6281302.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWLPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
     gene            complement(10016..10885)
                     /gene="htpX"
                     /locus_tag="PXD88_001747"
     CDS             complement(10016..10885)
                     /gene="htpX"
                     /locus_tag="PXD88_001747"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL6281303.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(10973..12055)
                     /gene="dinB"
                     /locus_tag="PXD88_001748"
     CDS             complement(10973..12055)
                     /gene="dinB"
                     /locus_tag="PXD88_001748"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL6281304.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
BASE COUNT         3418 a         2732 c         2321 g         3605 t
ORIGIN      
        1 aaatttgcaa ccactattag gagttaaata tgtttccaga atttcgtgat ctcataaccc
       61 aattaaagca aaacaattca cattttgctc gcttatttga taaacataat gagctagacc
      121 agcgtattaa gaatatggag gcaaatattg aactggcaac acatgaagaa gttgaggcac
      181 taaaaaaaga aaaattgcat ttaaaagacc aactttatgc aattctaaaa caagaatcgg
      241 cttaacctaa agtaaaagct cagaaaatat tctgagcttt aatttcggtc atattagaca
      301 atattacagt tttaccggct caataatttc gcttgggtag caacccaaca ctttgaggta
      361 gctggtaact tgctccaatt ccgccaatgc tttttgggtg ttctcggaat gaatatttgc
      421 ctccagctcc acataaaaca tctcttccca aggtttgccg taaatcgggc gggattccag
      481 tttcatcata cgaatatgat gatttttgaa taccattaac gcatcgacca atgcacccgc
      541 ctgttgcgtg gtggtcatta acagtaacgt tttggtttgt acctgtggcg aaacctgcac
      601 agcctctttg gcaacaacaa taaaacgggt gatattgtga gcttgattag caatatcggt
      661 tttgatattc gtcaagccat acaattttcc gccatcttca ttgcccaagg caacaatatt
      721 cggcttattc aagcgagcca ccatttgcat tgcgtgcgag ctgctttcgc aatatttgat
      781 atgtacttta tctagcccgg ctaaaaattg gctacattgc tgggcaggct gagggtgggt
      841 gtaaatggta tccacctccg ccaaatcaac cgtgccgttt gccaatacac aatgtttgat
      901 tgggtacgcc aattcaccca ctaaggttaa atcggtatgc tgcaataaat catacacttc
      961 attgatcgaa cctgaagtcg tgttttcaag cggcagtacg ccaaaatcgg cttcaccaag
     1021 gctgactttc tcaaatactt cattaaaaga atggcagctt aattccgcca atgtgccttg
     1081 atattttttg gcaaactgtc gagatgccat attagaataa gagcctcgca ttcccaaaaa
     1141 cgcaatcgaa acctgctctt ctttttgtgc attcaattta ttttgcagat aattttgctg
     1201 agtcagcact gaatcttcaa taatacgttg gaaaatttgg gtcacatatt gcggatcaag
     1261 ctggtaattc tccgcttcgg caaaatttac cagttcttga agcaaaatct tttcccgttc
     1321 taaatctctc aagggttttt gtgtgatttc tttgctccgc accacatcaa aggctaagcg
     1381 gtggcgttct gccagtagct ttaataaatt gcggtctaag ttggttattt gggttcgaat
     1441 atcggctaaa tctaaagaca ttatttcact ctctgtcagg ctaaatgctg aaaattataa
     1501 cgagttgcaa aagaaagaaa agacaagcgg tcaaatttac aaaaaaattt gcaaatctaa
     1561 ccgcttgtaa aacgtgttta ctttattgag tgcaatcaac aggctcggca ttacctacaa
     1621 tgcctttgtg tctgagcaag gcatcaaggg ttggcttacg cccacggaag cgttcgaaca
     1681 gcaccattgg ctcttctgaa ccgcctcggg ttaagatatt atctaagaaa gactgccccg
     1741 tttcagggtt gaaaatcccc tcttcctcaa agcgtgaata ggcatctgct gaaagcactt
     1801 ccgcccataa ataactgtag tagcccgccg catagccgcc tgcaaaaata tgcgagaaac
     1861 tgtgtggcgt tctcgcccac tctacgcctt tggcaacagc gacttggtct ttcacctctt
     1921 taagtaaggc taacacttgt ccttgtttgc tcgggtcata ttcggtgtgt aggcggaaat
     1981 caaacaagcc aaattctaat tggcgaagca caaacattgc cgcttggaag tttttcgccg
     2041 ccaataattg ctctaatttc gcttttggta acggctcgcc ggtttcataa tgccctgaaa
     2101 taaaggctaa tgcctcttct tcccagcacc agttctctaa gaattggctt ggcagctcca
     2161 ctgcgtccca cggcacaccg ttaatgccgg cgacatcgcc cacgtcaatt tcagttagca
     2221 tatggtgaat gccgtgtcca aactcgtgga acaaagttgt cacttcatcg tgggtaaaca
     2281 atgccggttt atcgccaatc ggtttattga agttacaggt taaatatgcc accggttttt
     2341 gtaatgtgcc gtcagccaag cgtttttggt tgatgcaatc atccatccac gccccaccac
     2401 gtttgttttc acgagcgtat aaatctaagt agaacgagcc acgcaagcgg tcatttttat
     2461 caaaaatatt gaaaaaacgt acatctttgt gccatacatc cacatctttt tgttcttcca
     2521 cacgcatacc gaaaatgcgt ttaattactt caaataagcc tgataatacg cgattttccg
     2581 ggaaatacgg gcgaagttct tcatcattga ccgaatacaa tgcctgtttt tgtttttcgc
     2641 tgtagaacgg aatatcccat aaatccaaat gttcaatgcc gaaatgggct ttagcaaatt
     2701 ttttcaaatc gcataattca tttttgcctt gagctttcga gcgagcggct aaatcgttca
     2761 agaaatctaa tacctgttgt ggattttctg ccattttggt ggctaatgaa taatcagaat
     2821 aagtcttaaa gccgagaagt tgggcttttt cgtgacgcag ttttaagatc tcatcaatca
     2881 ccgcactgtt atcccatttg cctgcattcg ggccttgatc agaagcacga gtcacataag
     2941 cacggtacat ttcctcacgc agtgctttgt tttcacaata cgtcatcacc ggcaaatagc
     3001 ttgggatttc aagagtgaag cgatagcctt tcttaccttt gctttctgcg gataattttg
     3061 ccgcttctaa tgccgattcc ggcaagcctt taagctgtgc ttcatcggta attacaatat
     3121 cccaacccat tgttgcatca agtacgttgt tgctaaattg cgagttgagt tccgacaagc
     3181 gtgcagaaat ttccccgtag cgtttttgtt tctctgccgg cagtgaaatg cctgataatt
     3241 caaaatcttg taagctgttt tcaatcgcct ttttctgtgc aaccgaataa gtttcaaact
     3301 cagggctgtt ttttaacttc acatagcctt gatataaccc ttgatgttgc cccgcccaag
     3361 tgctgtattc cgataataac ggcaagcacg cttggtaagc ctcacgcaac tctggggaat
     3421 ttttcaccgc attcaaatgc cctaccggtg accacgcacg ggagaattta tcctctgcca
     3481 ttgcttgtgg catatagaaa ttttcccacg tcgggttttc aatttgtgcg actttttcaa
     3541 cagtttcacg gcattctttg atcaccgctt ctaccgccgg tttgatatgt tcaggtttga
     3601 tttgtgagaa cgcaggcaag cctgtgtaat ttaaaagagg gttagacatt attttttcct
     3661 tttatggtca aaatgaaaat tcgtatcaag ataatacaca aagtgagaga gaaaagaaaa
     3721 caagcggtca tatttcaata attttttgca aaaaaatcac aaaatatgac cgcttgtctt
     3781 tagaatttga ctgtatgccc gtaactttca atgatttttt ggatacgctc taaatcctct
     3841 ttaggcggtg acattacccc ttccagctca tatttatagc ctaaggtttc ccatttgtga
     3901 gcccctaaac gatgataagg cagaagttcc actttctcaa tgttatccat tccttgaata
     3961 aactgcccta aacgatgggc agaatcatcg tcatcagtat aacccggcac gaccacatag
     4021 cgaacccaag tcggtttatt taatttgtgc agataacggg cgaaatcaag ggtacgctta
     4081 ttcgacaccc cgactaaatc ttggtgaact tcatcattga gctgttttaa atccagcaag
     4141 accaaatcgg tcacttcaag catttcatcc accaccgggc tataatggcg aacaaaacca
     4201 ttggtatcta agcaggtatt aatgccttca gccttacagg cacgaaacca atcccgcaca
     4261 aactccattt gcaacaccgc ttccccaccc gaagctgtta caccaccgcc ggttgctttc
     4321 ataaaatgct tataagtcgt gacttctttc atcagctctt caaccgtaat ttccttacca
     4381 ccatcaagat cccaagtatc acgattatgg caatatttac accgcatcaa acagccttgc
     4441 aagaacagaa taaaacgaat ccccggtcca tctaccgtac cgcaggattc aaaagaatgg
     4501 atacgtccaa caacagacat ttgtcacctc aaccctcaaa aaattttgag aaattgtagc
     4561 aaatttttat gttgttcgca gaaataaatc acaccggtat attttaagaa aggagaaagt
     4621 catactattt tttgcctatt tcaggaataa acttttatta atctattgac tccatcaaca
     4681 tatcaaccaa atatgtttaa atttttgcat tttttaaagc tattttgacc gcttacaagc
     4741 agtcggtttt tctgaaaact ttgcaaacct agccggcgtg gtatttggcg gcgacctctt
     4801 ttaccagtaa gtcgaaatcg ctttcgtagg tgagatcctg cttgactcgg tatttttcaa
     4861 attcgctgag ggcgaaagat ttagcaattt cagcggtaac tttgccggca tcttgtaaga
     4921 tttctcggtc ggtggcggca agaaagcggt taaggcgggt ttcccagtct gccattgtca
     4981 tcggaatttg gcgttctgcc atatcttccg ccatatccaa ataggcagag accagccgtt
     5041 gtagttgtgc taattcatta tccgataaat aatttttggc aaccaccaca tcaaaggggt
     5101 aaattttgcc ttgcggagcg tctttccaat tcgttagccc catattcggc ttttcagcgt
     5161 tggctcgtgc cataatcagc tcggcggcgg tatgcccgtg aattgcccaa tggagcttgt
     5221 tctgcacggt ggcaaaaaag cgtttggtgg cggttgcggt gcggtcgtag tccacggcgg
     5281 tagcgtaaat gtcggtgatt ttttggtaga acttgcgttc ggataaccga atttcccgaa
     5341 tacgagcaag ctgttcttca aagtattttt tgcccaaaat cgtgccgtca tttttcagcc
     5401 gttcatcgtc catcgcaaag cctttaatcg caaagctatg cacgatttcg gttgcccatt
     5461 tgcgaaactg caccgctcgc tcggaattga ctttataacc caccgcaata attgccgaca
     5521 gattataatg cttggtgtgg tagtttttgc cgtcttgggc agttatccaa aaaaattgga
     5581 taactgaatt ttcagctaac tcattgtcac taaagatttt tttgagatga tagctaatgg
     5641 ttcgtacatc aacatcatac aacaccgcca tcattttttg gctaagccat acattttcat
     5701 cggcgtaaac ggcatcaact tggctttcgc cggtagctgt aataaaagtg aggtattccg
     5761 ccacagagga acgaattaaa tcttgcttag acatctcttt ctcccatata gaacactgta
     5821 attataaaca atattacgaa agctgtgtaa atgaatagcc aatttttcga gcgagatcac
     5881 aaaaaaaccg cttgcggcat aaatgctaca agcggttgat tattactcac aaaattgttt
     5941 ccaattttgt tcgctcctac ggagccgtcg gcaaagccaa cgttcaaaac gcaatgcgtt
     6001 ttgtggctaa aagttttgca aattgtaatt acatactttc agtgaaggtg cgggtaatta
     6061 cgtccatttg ttgctctttg gttaaagagt tgaaacgtac cgcatagcct gaaacacgaa
     6121 tcgttaattg cggatatttt tcagggtgtt ctaccgcatc taataatgta tcacggttta
     6181 acacgttcac atttaagtgc tgaccgcctt ctacagttgc ttcgtggtgg aagtagccgt
     6241 ccattaagcc tgcaaggtta cgtttttggg cttcgtaatc tttacctaac gcatttggta
     6301 cgatagagaa agtataagaa ataccatctt tcgcataggc aaacggtaat ttcgccacag
     6361 aagttaatga agctaccgca cctttctggt cacgaccgtg cattgggttc gcacccggtc
     6421 cgaatggagc acctgagcga cgaccgtccg gtgtattacc ggttttctta ccatatacca
     6481 cgttagaagt gatagtaagc acagactgag tcggcgttgc attgcggtat gttttgagtt
     6541 tttgaatttt cttcataaaa cgttcaacta aatcaactgc aatgtcgtcc acacggttat
     6601 cgttgttacc gaattgcgga tattcaccct caatttcaaa gtcggttgct acgtttttcg
     6661 ctacaccaac cacttcgcca gctttgtttt tgatttcaat atcggtacgg attggtttta
     6721 ctttcgcata tttaatggct gaaagtgagt ctgccgctac tgaaagccct gcgataccac
     6781 acgccattgt gcggaacaca tcacggtcgt gaagagccat taatgccgct tcgtatgcat
     6841 atttatcgtg cataaagtgg ataatgttca gtgctgtcac atattgggtt gcaagccaat
     6901 ccataaagct gtctaagcgg gtcattacat catcgtaatc taagtattca cttgtaattg
     6961 cttcagtttt aggccctact tggtcgcctg atttctcatc aacaccgcca ttgattgcgt
     7021 ataacaaggt tttcgctaag tttgcacgag cgccgaagaa ctgcatcatt ttacccacga
     7081 tcattggcga tacgcagcac gcaatcgcat agtcatcgtt ttggaaatcc ggacgcatta
     7141 agtcatcgtt ttcatattga actgatgaag tatcaataga cactttcgca cagtagcgtt
     7201 taaatgcttc cggtaattgt tcagaccaaa gaatagttaa gtttggctcc ggtgacggcc
     7261 ccattgtgta aagggtgtgt aaaatacgga agctgttttt ggttactaag gtacgaccgt
     7321 ctaaacccat accggctaag gtttcggttg cccacattgg gtcgcctgag aataattgat
     7381 cgtattccgg agtacgcaag aaacgcacca tacgcaattt cattactaaa tggtcgatta
     7441 actcttgggc ttcttgctcg gtaattttgc cggcttttaa gtcacgttcg atataaatat
     7501 ctaagaatga agacacacga ccgaaagaca tcgccgcacc gttttgcgat ttaaccgctg
     7561 caaggtaagc gaaatatgtc cattgcaccg cttcttgtgc attggttgca ggacctgaaa
     7621 tatcaaaacc gtagcttgca gccatctctt tcattttgcc taaagcacgg tgttgctcgg
     7681 caatttcttc acgcagttga atcgtggctt gaatatcttc gccggattct aaacgagctt
     7741 gtaatgaggc aaactggcgt tgtttgtctt tcattaagaa gtctgcacca taaagtgcca
     7801 tacggcggta gtcaccgata atacgaccac gaccataagc atccggcaaa ccggtaatta
     7861 cacctgattt acggcaacgt aaaatatccg gagtgtaaac atcgaatacc ccttggttat
     7921 gggttttacg gtattcggta aagatttgtt ctacttcagg tttaagctca cggcgataaa
     7981 ctttgcacga acctttcacc atattgatac caccaaacgg cataatcgca cgttttaatg
     8041 gagcatctgt ttgcagacca acgatttttt ctaacgattt atcaatataa cccggtgcgt
     8101 gtgaggtaat ggttgatggc gtgtcgcagt caatatcata cggttcgtgt gttttgtttt
     8161 ctactttgat catttccatc acatctgccc acaatttgct ggttgcaggt gttacttcag
     8221 ctaggaaaga ctcatcaccc tcataaggtg tgtagttttt ttggataaaa tcacgtacat
     8281 ttacttcagt ttgccactcg cctgcggcaa aaccttccca cgctttttgt tgagcgtctg
     8341 ttagttgagt cattttaagt cctctgtgtt agtaagttaa aacgggaaag cggtgatttt
     8401 ttgcaaaaaa tttgcaaaat ttgaccgctt gaatctgaaa tcttaatgct ttctaatgta
     8461 taagaaccac tgcattaaac caatgaaaaa cacgccaccg acaatattac ccagcgttgc
     8521 cggaattaag ttcttaaaca caaaatgaga tacatctaaa tcggcaaatt gcgttgggtc
     8581 aacattaatt gctgtccaaa attcagggct ggcaaagtgc gaaatcgcaa tccccatcgg
     8641 aatcataaac atatttgcca cacagtgttc aaagccggaa gccacaaaca ttgcaatcgg
     8701 taacatcata ataaaggctt tatcggttag gcttttacct gcataagaca tccacaccgc
     8761 aatgcacacc ataatgttac agaaaatgcc taaacagaaa gcctcaaacc attggtggtg
     8821 aattttgtgc tgtgcggtat ttaaaataac caaaccccat tgccctttgg ctgccataat
     8881 ctgaccacta aaccaaatca acaatacaat ggaaatcgcc ccaacaaagt taccgaaata
     8941 caccactacc cagtttttaa acatctgtaa ccagttaatt ctttggctgg ctctggctac
     9001 aatcgtaagt gttgatgagg taaaaagttc tgccccaaac accacacaca taatcacgcc
     9061 gagtgaaaat accaaaccac caatcagttt agccataccc caaggcattt ggctcgcacc
     9121 cacttgggtt gtggtataaa atacaaatgc tattgcaata aaaccgcccg cagtaatggc
     9181 agagagaaag gaatataatt gattttttgt tgctttataa accgcaccat cttctgcgat
     9241 ttttgccatt tcagcaggag aaaacatcag acaaccttaa caatgagaat tgaaaaaccg
     9301 atatattatg tagaaattat agacctcttg agataatctt caaataaaaa tattacacaa
     9361 tcagaggtat ttcgatgtct ttttttgata tagaacaaaa tccataaaaa acacaacatt
     9421 caagaaaatt tataactaca ttttaataac aaaccaacta caattttatg acagaatatc
     9481 tcacttcctt tttcagttta ttcttttccg aacaaaatca actctttact atgtttctga
     9541 gtggatttct aagcgctacc ctcttacccg gaaattctga aattatcttc actaccttag
     9601 caagccaaca tctcatcact tatggctctt tatcctcatt ttcactgttc aatttactct
     9661 tggttgcaac cttaggtaat agtttaggta gcataaccac ttatgcgata gggctattac
     9721 tccctcgccc acagaatact accaatcgtt attcacaatg ggcattagcc aaaagtgaaa
     9781 aatatggcgt gttagtcttg ctttttagtt ggttaccgat tgtaggcgat attttctgtg
     9841 gcattgccgg ctggctacgg tttagccttt ggcaaagcat tctctttatt gtgattggga
     9901 aattgttacg ttatctgttt ttgctggcaa ctctctattc ggtgttaccg catattttat
     9961 agaaaacaaa agcggctgtt ttgcaaaaaa ttttacaaaa acaaccgctt gtgctttata
    10021 agtttcttaa cgcttcaata cgtttttcta acggagggtg gctcataaac aactctttac
    10081 cacggctacc gttaatcata aaggcagcaa gagagccttc catttcttgc ggttcgtgaa
    10141 cacgttgcaa gcgttgtaat gccgcaatca ttttctcttt accgactaat tgagcagagc
    10201 ctgcatctgc acgaaattca cgttggcgag agaaccacat tgcaatcatt gttgctaaca
    10261 caccaaacac catctgtaac acaatatcta ctacccagaa caccagcgta ttggtgcttg
    10321 aattgccatt ttcgtcacgt gaacttgccg ccattgtcga aataatacga gctaagaaaa
    10381 tgacgaaagt atttaacacg ccttgtaata aagtcattgt aaccatatcg ccattcgcaa
    10441 tgtgcgccac ttcgtgtgct actaccgctt cagcttcgtc tttagtcatt gaattcagca
    10501 agccggtgct gactgcaact aaagaattac ttttcgttgc tcctgtagcg aatgcattta
    10561 catcagccga atggtaaatc gcaatgtccg gcattgggat attcgcttgc tgagcctgac
    10621 gttgtacagt gttgaataac cattgctccg cttcgttacg aggctgtgta atcacctctg
    10681 ccccaaccga acgcaatgcc attgatttcg acataaatag cgaaattaaa gacccactga
    10741 aaccgaagac taacgaaagc accaaaatac cggcagtgct ttgcccttga atgccggtca
    10801 ctttaaaaat aaggtttaat acgatcccta aaacaaaggt aatcgctaag ttagttaata
    10861 aaaatagaat gacacgtttt gccataatgt tttcaatctc caaaaatata gatgcaatga
    10921 ttgcacgaat aagataatga ctttagcctt aatttcaagt cattatttac aattattccc
    10981 acaaatttaa ctgtttattc acttttttct cgggaaagtg aacacttaga ccgattaatc
    11041 gcacctttcg ttcctttctt cgggtaaaaa tttgctgtag caactcgcca aatcgctcat
    11101 acgcaaagcc atcggtggtt cgttcaagcg tggtttggct aaaatcatca aacttgagtt
    11161 taatgcctaa ctttttaaac tcagttaatg gcgtatcgcc ccagtttcgt tgcaaccgaa
    11221 aaaccagttt gtcgaataaa tctgccacaa tcttttccgc ttgctcaagg gttgaaatat
    11281 cgtgcaacag cgtattttcc accgccagcg attttctttc acgataaggc tctaccgctc
    11341 gttcatcaat accgtggcta aaatcccaaa gccgttgccc gaatttgcca aacgctcggt
    11401 aaataaccgc tttttctgct tgctgaatat caccacaggt ttcaaagcca agctgtttta
    11461 atttttcatt ggttactttc cccacacccg gaatttttgc aagcggtaga tttttcacaa
    11521 aattttgcac atcatcaggc gtaatcacac attgtccgtt aggtttgttt tgatcggagg
    11581 taatttttgc taaaaattta agcggagcaa ctcctgccga ggcagttaaa tgcaattcat
    11641 tgaaaatatc attgcggatt gcttgagcaa tccaagtggc ggagccaaaa tagcgttcgc
    11701 attcggttac atctaaatag gcttcatcaa gcgacaaggc ttcaatcaca tccgtatagc
    11761 gatgaaaaat ttcgtgaatt tgagcggaaa ccgatttata caacgccata ttcaccggca
    11821 ataaaattaa attcgggcat ttcttcaacg cagttgccgt tggcattgca ctgtgtaagc
    11881 cgaattttcg agcctcgtaa ttacaggttg tcagcacacc tcgttgatta gcattgccgc
    11941 ccaccgccac cggcttaccg accaacgccg ggttttcccg catttcgacc gctgcataaa
    12001 aacaatccat atcaatatgg ataatttttc gcttatgttt agcttgaatc gacatttgca
    12061 atattttccc caaaaa
//
LOCUS       DANLXK010000078        12058 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.079, whole genome shotgun sequence.
ACCESSION   DANLXK010000078 DANLXK010000000
VERSION     DANLXK010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12058
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            79..1077
                     /gene="yiaK"
                     /locus_tag="PXD88_001749"
     CDS             79..1077
                     /gene="yiaK"
                     /locus_tag="PXD88_001749"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL6281305.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            1202..1567
                     /locus_tag="PXD88_001750"
     CDS             1202..1567
                     /locus_tag="PXD88_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL6281306.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            1631..2110
                     /locus_tag="PXD88_001751"
     CDS             1631..2110
                     /locus_tag="PXD88_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL6281307.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            2111..3388
                     /locus_tag="PXD88_001752"
     CDS             2111..3388
                     /locus_tag="PXD88_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL6281308.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            3491..4477
                     /locus_tag="PXD88_001753"
     CDS             3491..4477
                     /locus_tag="PXD88_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6281309.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            4551..5534
                     /locus_tag="PXD88_001754"
     CDS             4551..5534
                     /locus_tag="PXD88_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL6281310.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            5665..7149
                     /locus_tag="PXD88_001755"
     CDS             5665..7149
                     /locus_tag="PXD88_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6281311.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            7344..8390
                     /locus_tag="PXD88_001756"
     CDS             7344..8390
                     /locus_tag="PXD88_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6281312.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AAHLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            8403..9512
                     /locus_tag="PXD88_001757"
     CDS             8403..9512
                     /locus_tag="PXD88_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL6281313.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            9617..10507
                     /locus_tag="PXD88_001758"
     CDS             9617..10507
                     /locus_tag="PXD88_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL6281314.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIAILPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            10579..12048
                     /locus_tag="PXD88_001759"
     CDS             10579..12048
                     /locus_tag="PXD88_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL6281315.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         3349 a         2597 c         2909 g         3203 t
ORIGIN      
        1 attgacttta atttgtctta agagtaactt ataaaacgtg attttactat ttgaaatatt
       61 gaggtattca agatgactat tcgagtttcc tatgaagaat taaaagctca atttaaacgt
      121 gttctgttgg ctcgcaatgt gcgtgaagag attgccgaag agtgtgccac tgtgtttgcc
      181 gacaccactc aagcgggtgc ttattcacac ggggtaaacc gtttcccacg ctttattcag
      241 cagttagaga acggtgatat tgtgccggaa gccgtgccga ctaaagtgct ttcactgggg
      301 gcgattgagc agtgggacgc tcaccaagcc atcggtaact taaccgcaaa aaaaatgatg
      361 gacagagcaa tggagcttgc atctgaaaac ggcatcggcg tagtggcgtt acgtaatgca
      421 aaccactgga tgcgtggcgg ttcttacgga tggcaggcgg cagagaaagg ctatatcggg
      481 atctgctgga cgaacgccct tgcggtaatg ccgccttggg gggcgaaaga gtgccgtatc
      541 gggactaacc cgttaatcat tgcggtgccg actaacccaa tcacgatggt ggatatgtct
      601 tgctcaatgt actcatacgg aatgttggaa gtgcatcgcc ttgctggtcg tcaaaccttt
      661 gtcgatgctg gttttgatga tgacggcaac ccaacccgtg atccggcaac ggtcgagaaa
      721 aacctccgtc taatgccgat gggcttctgg aaaggttcgg gcttatcgat tgtgttagat
      781 atgatcgcca ccttgctctc taacggtgaa tccactgcgg cagtcaccga agataaagac
      841 gatgaatatt gcgtgtcgca agtttatatc gctattgaag tggatcgctt aattgacggc
      901 aaaaccaaag acgaaaaact caaccgtatt atggaatatg tgaaaaccgc agaacgtgcc
      961 gaccctgatg tggcagtacg tttaccgggc cacgagttca cccaaattct agccgataac
     1021 aaagccaacg gcattccggt ggatgacacc gtttgggcga aattacaggc gttgtaattg
     1081 caaattgacc ggtagggtgg gcgtaagccc acgcattaga cacaatcata agatgacgtg
     1141 ggcttacgcc caccctacaa gcggtcattt ttccgcagaa ttttacaaaa cggaggtatg
     1201 aatgtttttt ggtcatattt cacaagttaa agcgaatcga tacccgccgg cgatccaaat
     1261 tgcgttgaac tatctgaaaa ataccgattt tgatgcgatg gaagcagggg tttacgaact
     1321 caaaggcaga caaatttatg tgcaggtgtt ggatttgaac accaaatcga aacacgaatt
     1381 tcagccggaa gtgcatcgca attacctcga tgtgcagtat ctacaccgag gcaaagagat
     1441 aatggctgcg gcggtggata ccggcaccaa tccgattgcg atggaataca accctgagcg
     1501 ggatattcaa tattatcaat ccgttgccaa cgaaaatgaa tttcgctgcg ttgaaggcaa
     1561 tttttgacgg cacggaaacc attcgcaaag tggtggtaaa aattgcgatg agcgaaattg
     1621 aggagcaacg atgaaagcct tagctcaatt agtcggaaaa ctgttagaaa tcttggtggt
     1681 ggtgatttta tccgcaatgt cgattttggt tttcgtcaat gtggtactac gttacggttt
     1741 taacagcagc attagcgtga ccgaagaggt gtctcgctat atgtttgttt ggttggcgtt
     1801 tttaggggcg gtgttggcat ttagcgaaaa tcaacacgtt aaagtcacaa tgctgaccga
     1861 taaattatcg ccaacggctc gtaatatctt aagcgtagtc acagatttag cgatgttgtt
     1921 ctgttgctac ttaattgtgg acggtagctg gattcaattt aacctcaacc tgaataactt
     1981 tgccccgatt tcaggcttac cgcaaggcat cactttcctt gccagcacag tggcaggggt
     2041 attaatcggt ttattaatta ttgcccgcat tgtggcaacg gttggcgtga ttgcaaaagg
     2101 agaaaaatag atgactgtgg taatttttct ttccgtcttg cttggctcga ttttattggg
     2161 cattccggta gctttcgccc tgttggtctg cggtgtggcg ttaatgttgc atttagatct
     2221 gttcgatgcc caaattttgg ctcaacaaat tgtgagcggt gcagacagtt tctcgctaat
     2281 ggcaattccg ttcttcattc ttgccggtga aattatgaac gagggcggtc tctccaaacg
     2341 gattatcgac ctgccgatga aattagtcgg tcataaacgg ggcggtttag gttttgtagc
     2401 aattttagcg gcgatgatta tggcaagcct ttccggttcg gcggtggcgg ataccgcagc
     2461 ggtagtcgca atgctactgc cgatgatgaa aaccaccggt tatccgattg accgctctgc
     2521 cggtttaatc ggtacggcag ggattatcgc cccaatcatt ccgccaagca ttccgtttat
     2581 cgtatttggt gtggctagtg gcgtgtccat taccaaactg ttcttagccg gtattttccc
     2641 gggcattatg atggggatct gcttggctgc cctttggtgg tggcaggcaa aacgtttgga
     2701 tttaatgacc ttctccaaag cgaccaaaga agaactttgc atttcattta aaaacagtat
     2761 ttgggcgtta ttgttgcctg tcattattat cggtggtttc cgctcgggaa tgttcacccc
     2821 aaccgaagcg ggtgcggtcg caactttcta tgccttgatt gtttcactgt ttgtttaccg
     2881 tgaaatgaag ttcaaagatt tatacaaggt agtgttggcg gcagcgaaaa ccacggcagt
     2941 agtgatgttc ttagtggcag cggcaaatgt gaccggctgg ctgattaccg tagcggaatt
     3001 accgatgatg ctcaccgagc tgttagagcc gttaattgaa agcccgacca cactcttatt
     3061 ggtgattatg ttagcggtgt ttattatcgg aatggtgatg gacttaaccc caaccgtgct
     3121 gattttaacg ccggtattaa tgccgttggt ggaagaggca ggcattgacc cggtttactt
     3181 cggtgtgctg tttattctta acacctccat cggcttgatt acaccaccgg tcggcaacgt
     3241 gctaaacgtg attaccggcg tgtcgaaact gccgttcgac caagcggcta agggcgtaat
     3301 gccttacctc gtaatgatga tttgtttact actgttgttc gtgttcttcc cgtcactggt
     3361 gttagtgccg ttaagctgga tgcagtaatg gtttgaaccg aaacaagcgg tcgaattgac
     3421 gcaaaaattt gcaaattttt ttggcaaaac agaccgcttg caactcaatt tttaatcaca
     3481 ggagaaccct atgaaattat ttaatttaaa aaccttattt gccttagtgg caggcgttgc
     3541 ggtaatgagc ggctctgcaa tggcagaaac ctcactgcgt tttggttatg aagccccacg
     3601 ttccgatacc caacacatcg ccgccaaaaa attcgatgaa ttattggcag caaaaaccaa
     3661 aggtgaaatt aaattaaaac tgtttccgga cagcacctta ggtaatgctc aaacgatgat
     3721 cagcggcgtg cgtggcggta ctatcgacat tgaaatgtcc ggctcgccaa actttaccgg
     3781 cttagagcca aaactaaatg tgattgatat tccgtttatt ttcaaagatc gtgaacacgt
     3841 ttacaaagta ttagacggcg aagttggtca aggcttatta aaagatttag aagcccaagg
     3901 cttaaaaggc ttagccttct gggacgttgg cttccgtgct ttctccaact caaaacaccc
     3961 tgtgaccaag ccggaagaca tcaaaggctt aaaagtccgc accaaccaaa acccgatgta
     4021 cattcaagcc ttcaccttac taggcggcaa cccggtgcca atgccacttt ctgagcttta
     4081 caccgcactc gaaacccgtg ccgttgatgc ccaagaacac ccaatcggca ttttctggtc
     4141 ggcaaaactg tttgaagtac aaaaacattt aagtttaacc aaccacggct acaccccgtt
     4201 aatcgtggtg atgaacaaag cgaagtttga cggcttagct cctgaattac aaaccgcatt
     4261 agttgaagcc gcaaaagaag ccggtcaatt ccaacgtgat ctcaacgtga aaaacgaaaa
     4321 agagatcatc gaaaaattac gcaaacaagg catcgaagtg atcgaacaag tggataacgc
     4381 cccgttcaaa gcagcgattg aagcggaagt ccgcaaagct ttcgtggaaa aacacggcga
     4441 tgaattattg aaaaaagtgg atgcgttagc acagtaattg actttatttt agtctaaagc
     4501 tccctccgtt tggggggagt tgttgtatag actctactat aggagagact atgaaactgt
     4561 ttaatttaaa aactttagcc gctttcgttg ccggttttgc actgttttca accgcacaag
     4621 cagaaacctc attccgcttt gcgtatgaag ctcctcgttc tgatactcaa catattgcag
     4681 cgaaaaaatt taatgatttg ctgcaagaaa aatcccaaaa agggctgaaa ttaagcctct
     4741 tccctgatag cacgctcggc aacgcacaaa cggcgattag cggtgtgcgt ggcggtacta
     4801 ttgatattgc aatgtccagc tcctctaact ttaccgggtt agaaccaaaa ctgaatgtga
     4861 ttgatattcc gtttattttc aaagacagag accacgccta taaagcctta gatggagaga
     4921 ttggtcaagg tttattaacc gcattagagg ctcacggttt gaaagggttg gcgttttggg
     4981 aagttggttt ccgagcgttt tccaactcca agcacccgat caccaaaccg gaggatatta
     5041 aaggcttaaa aatccgtact aaccaaaacc cgatgtatat tcaagccttc tctattttag
     5101 gtgcaaatcc ggtgccaatg ccgctttcca agctttacac tgcactggaa accaaagcgg
     5161 ttgatgccca agaacaccca atcggcattt tctggtcggc aaaactctat gaagtacaaa
     5221 aatatttcag ctttactaac cacggttaca ccccgttaat tgtggcgatt aacaaagcga
     5281 aatttgatgc actgccagcc gagcaacaaa ccgcattagt tgaagcggca aaagaagccg
     5341 gaaaatacca acgccaactt aacctagaaa atgagcagaa aattatcgac tcgctcaaaa
     5401 aagcaggtat tgaatttgtg gataacttag ataccacacc gttcaaagat gccgtatcgg
     5461 ctgaaacccg caaggcattt atcgagaaaa acggtgatgg cttagttaaa gccattgatg
     5521 cattggcgaa gtaaaaatag agctacaaag tgctcggtta aactaacctc acacgaatcg
     5581 tgtgaggtac aagcggtcaa aatccgcaaa atttttacac atctttcctc aaaggaggaa
     5641 caaatggcac agcccatttt aagtatgcag cacatcatca aacgctttgg tagccatacg
     5701 gcggtgaatg atgtcagcct tgatatccac tcaggcgaga tcgttgcctt actcggtgaa
     5761 aacggtgcag gtaaatcgac cctaatcaaa atccttgccg gtatttatga ccgtgacgag
     5821 ggtgatattc ttttccataa ccaaaaaatc caatctgccc acgctattga gaaaggcaac
     5881 aaaaagccca tcgcttttat ccaccaagat ttaggcctaa tagaatggat gacgattgcc
     5941 gaaaatatgg catttgtaat ggggttccct cgcaaatttg gcttgattga ctgggcgaaa
     6001 gtgcgagagc agtcgcaaaa agcccttgat tttgtaggca ttaaactctc tgccgacact
     6061 cgagtgtttg atttaagccg taccgaaaaa gccttactcg ccattgcccg tgcgattgcc
     6121 gtcaatgcag aaatcttggt tttagacgaa cctactgctt ccctacctgc ctctgatgta
     6181 gagcatcttt tcactgtgtt aaaccgctta cgttcccaag gtgtgggaat gatttatgtg
     6241 acccaccgtt tagatgaagt gatcgccatt tccgaccgca ttttggtgat gcgggacggt
     6301 ttcccggttg cagaagggca aaccaagctc tatgacgtca aaggcttggt caaagcgatt
     6361 gtaggcgaag agagccgtgg cagacagcgg gtggatttac caaccgatac tcctgaaatt
     6421 ttaagcctgc aaaatgtcgt ggttggcgac accggcccgg tgaatttccg tctgcacaaa
     6481 ggtgagatga ttgcccttgc cggcttgcgt ggagcagggc aggaagaaat cggccgctta
     6541 ttatttgggg agcgaacctt agacaaaggc gaaattcagt tagacaagcg gtcatattct
     6601 gctaaagatc cgcaagatgc gatagccaaa ggtgtggcat tggttgcggg agaccgcacc
     6661 cgtgaaagcg tgtttatgtc aatgactacc agtgagaacc tgtttatcaa cccggtacta
     6721 agcggtcatt caccattaaa acgctactcc cgccgtgaag agtggggtga gagctggtac
     6781 aaattccaac tattcgatat tcgtccgaaa aatttgttta ttgatgccag tgcgttatcc
     6841 ggtggtaatc agcagaaaat cgtgttggca cgttggatgc acctcaatac gcctgttctg
     6901 attttagaag acccgactgc cggcgtggat gtaggagcaa gggcagagat ttacgacttg
     6961 ctcaacaaag cccttgcaga aggggtcgca attattgtga tttccaccga ctttgaagag
     7021 atcgctcatt tgtgtaaccg agcattagtc ttcaaccgag gggaaattgc cggtgaacta
     7081 ctgaacgaag aggtgacttt cgccaatttg ctggcgttgg catcggatag tcagtcgaaa
     7141 aaacaataac ttactctcgc ccgcttgcgg gagagagaca gctaaaaata gcgtcaggct
     7201 atttttagca gagagagggt aaacaagcgg tcatttttct taaaaaatat tgcgaaccct
     7261 ctccctccga aagcctaacg gctttctcct ccctctcccg caagcgggcg aggggaaaat
     7321 gcagaatttt aacggagtaa tttatggctc aaacaaacat caaatcaacc gcactggaac
     7381 aaccggtatc tatcgcccgt gacggtttta tggcatggtt ttcacaaatg tccactcgtt
     7441 atggcttact gtggttatgt gtgttattgg tgattatttt ctcacttacc accgaatctt
     7501 tcgcctcaat gctgacatta aatgcgattt tagaaagtaa atcgaaaatt gccctacttg
     7561 ctttggcagc cacaactaca atgattgtcg gcaaaatcga cctgaacgtg ggtttcggta
     7621 ttgtgttgtg gcacattctt gtgattactc tgcaagtcca atacggcttc tcgtggtata
     7681 tggcgatctt aatcgtgtta gtgattgccg ctctttacgg cttgctgaat gggattttag
     7741 ttgctcttgc tgatatcgat agctttgtgg caacacttgg ctcaggcaca gtgctttatg
     7801 ccgtagcact ctggcactcg ggcggtcgcc aaattgtcgg ggatttaccc gatgaattta
     7861 tcgcactcaa cagcacagaa attttcggta tcccgatttc tgctttctat gtgctggcag
     7921 tggctatcgt aatgtggttg gtgacagaac ataccccgac cggtcgttgt atgtatgcgg
     7981 ttggtggcaa cccaacggca gctcacctaa atggtatcaa tattaaaaaa tacaccattg
     8041 tgccgtttat tgtctctagt gtaatcactg ctttcacagg cgtattgatc tctgctcaac
     8101 aaggcgttgg tcaggcaagt gtcggtatgg actacttact gcccgcattg gttggggcat
     8161 tcttagggag taccactatt cgcccagggc gtattaacgt atggggaaca gtggtgggga
     8221 ttgccattct tgccatcggt atttcaggta ttcaacaatt cggtggagcg ttctgggttg
     8281 agccactctt taacggtgca acactgttac tttccatcac tattgcaggc tatgcccaac
     8341 gcaaacgctt gttaaatcaa aaagctgtac agaaaaaatc gaccaactaa gaggatttga
     8401 ttatgaaaaa agcatttcgt acaaccttaa ctgcaatcgc aaccttaact gctattgctt
     8461 tcggaaataa tgcgtttgcc aatgacgacc cgttcgtaca agaagcaaaa cagcttgtcg
     8521 cagcagctac ggctaagcaa gaaaaatggg acggaccgac aaccggccct caattacaaa
     8581 aagagaaaac tgtgattttt attgcctctg atatgaaaaa cggtggtgta cttggtgtga
     8641 ttgacggaat gaaagaagct gttggcgtaa cgggctggaa gttagatgta ttagacggtg
     8701 caggtacggt aaacaaccaa ctcgccgcac ttaaccaagc gattgcccgc aaaccggatg
     8761 cgattgtgat tggtggctgg aacccgaatg tggcgaaaat cccactacaa aaagcgacta
     8821 aaaacggcat taaacttgca gcttggcacg caacaccgga gccgggtgcg attgataaat
     8881 acggcatttt ctacaacgtg acctctgact cagacgaaat tgcacgctta tcggcaatgc
     8941 ttgcggtggc agaatctaac ggtaaggcaa aagcgattat tttaaccgac tcgctatatg
     9001 aaattgcgtt acgcaaagcg aacgtcatga aagaagttat cgaaaaatgt aaagagtgta
     9061 aggtgttaga gtttatcgac acgccattgg cggatacctc aagccgtatg cctaacctca
     9121 ctttcagctt actgcaaaaa tatggcgacg atttagagta tgcgttggca attaacgatc
     9181 tctactttga ctttatggct ccgtctttac gcaccgctgg taaagataaa ccgtttagca
     9241 tttccgcagg tgatggctca gtaacggctt atcaacgtat tcgcaatggt gataaacagt
     9301 ttgcaaccgt ccctgagcca cttaacttac acggctggca gttagtcgat gagctaaacc
     9361 gtgctttcgc taacgaaaaa ccgtctggtt atatcacacc ggctcaccta gtgactaaag
     9421 aaaatgtggc gtttgacggt ggtgaaaaca acctgtatgc cccacaaaac ggttacaaag
     9481 gcgcttacaa agcgatttgg ggcgtgaagt aatgacgtag gggcaaataa atatttgcct
     9541 cgaacaagcg gttgtttttt gcaaagattt tgcgaaattt aaccgcttgt cataaaaaat
     9601 agagagggta atacaaatga gcaataaatt tatccccaaa atctccaacc ctcgttttaa
     9661 tgagctggtt gggaatacgt ttgaacttga agagcttttt gataaggcaa tctgggcaga
     9721 agggccggcg tggagcaagc cacaacaagc cctctatttt agtgatgtaa aaggttgcac
     9781 aatgtaccgc tggacagagc aagatggtac acaggttttc cgccagccgt cttatttttc
     9841 taacggcaat gcgtttgatg caaacgacaa cttgattacc tgtgaacacg gcaatcgagg
     9901 tatcagttta accacgccaa gcggtgaata tcgttttttg gtcggtcaat tagacggaaa
     9961 acgactgaac tcacccaatg atgtggtggt aaaatcagac ggcatcattt ggttcactga
    10021 tccaccttac ggtattttgt cggataacga aggcaaacag tcgccaagcg aaattatcgg
    10081 ttgttatatt tactgctatg atccgaaaac cgacaagctg aatattgcaa ctttcaacac
    10141 gatgcgacca aacggcttgg ccttctcgtc agacgaaaaa caactctttg tggcagatat
    10201 gtcgagcgtg gaatttgacg aagatggctt acaccactta gtcgtatttg atgtggacgg
    10261 taataaacta aaaaatcgcc gagatgtggc ggaaattagt cccggcattc cggacggctt
    10321 ccgaattaaa caaaacggcg taattttctg ctcttgtgaa gagggaatta ttgctatttt
    10381 acctgacggc acggagctgg gacgatttgt gctgggtaag ctaacctcaa attgtagctt
    10441 tggcgatgat gaacaaacac tgtttattac ttgttcgaat agcgtttatc gtttaacaat
    10501 taaatagcag aatgcattaa gtgcgtctgt tgtagcatta caagcggttt ctttttcaaa
    10561 attttttaca aacaaataat ggataacaaa atgaactaca cactcggcat tgattgcggt
    10621 gggactttta tcaaagccgc tctttttgat acacaaggta atattcaagc ccttcatcgt
    10681 gaaaacgttt cggtaatcag tgaacaggca ggttatgcag agcgtgatat gtcacaactc
    10741 tgggctattt gtgcggaagt agtgcgttca accattgaaa aaagtggggt aaacccagcg
    10801 gatattaaag cagtagggat ttccgctcaa ggcaaagggg cgtttttact ggataagcag
    10861 aatcgaccgt tggggcgtgc gattttatct tccgaccaac gttcccttga gattgttaaa
    10921 caatggcagg ctgaaggcat tccgcaacaa ctttacccga ttacccgcca aactctttgg
    10981 acaggacacc ctgtgtcgat tttgaagtgg gtgcagcaaa atgaaccgga gcgttatgca
    11041 caaatcgggg cggtgttgat gtcgcacgac tatttgcgtt tttgcttaac cggtgagttg
    11101 cattgcgaag agaccaacat ttccgaaagc aatctttaca atatggaaaa aggcgaatac
    11161 gaccaacagt tagccgattt gttgggaatg ccggatgtgt tggagaaatt accaccagtg
    11221 attgaaccga ataaaatttc gggatatgtg actgaaaatg ccgccaaatt aaccggttta
    11281 gcggtgggta cgccgatagt cggtggcttg tttgatgtgg tttctaccgc acgttgtgcc
    11341 aatttagatg acgaaaccaa actgaatgca gtgctgggaa cgtggtcggt ggtgagcggc
    11401 attaccgatc atattgatgc aagccaatca ttaccttttg tttatgggcg ttatgccgag
    11461 gcagggaaat ttatcgtcca cgaagcaagc ccgacttctg ccggtaattt agagtggttt
    11521 gtgaatcagt ggaaactcga ttatgtgaaa atcaaccaag ctgttgccca attaccgccg
    11581 gcggcaagct cggtgctgtt tgtgccgttt ctgtatggct caaatgcagg cttaggaatg
    11641 caagccggtt tctatggtat gcaagcccac catacccaag cccatctctt gcaggcaatt
    11701 tacgaaggag tgttgtttag cttgatgagc catttaaacc gtatgtttat ccgctttcca
    11761 aaggctgacg tgctgcgagt taccggcgga ccggtgaaat ctaaagtttg gatgcaaatg
    11821 ttggccgatt taaccggaat gcggcttgaa ataccacaaa tggaagaaac cggctgcttg
    11881 ggtgcggcat taatggcaat gcaaggggtt gggctggata taagccaagt tcaagcccta
    11941 aataatgaaa tgcaggtgtt tgagccaaat ccggaaaatt atgcggctta tcagacgaaa
    12001 tatcagcgtt accaaaaatt aactgaagca ttaaatacaa tgatttaacc tgaattta
//
LOCUS       DANLXK010000079        11903 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.080, whole genome shotgun sequence.
ACCESSION   DANLXK010000079 DANLXK010000000
VERSION     DANLXK010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11903
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            120..617
                     /gene="purE"
                     /locus_tag="PXD88_001760"
     CDS             120..617
                     /gene="purE"
                     /locus_tag="PXD88_001760"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL6281316.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            632..1597
                     /locus_tag="PXD88_001761"
     CDS             632..1597
                     /locus_tag="PXD88_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL6281317.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            1616..2704
                     /gene="purK"
                     /locus_tag="PXD88_001762"
     CDS             1616..2704
                     /gene="purK"
                     /locus_tag="PXD88_001762"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL6281318.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(2925..3335)
                     /locus_tag="PXD88_001763"
     CDS             complement(2925..3335)
                     /locus_tag="PXD88_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281319.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(3338..5356)
                     /gene="uvrB"
                     /locus_tag="PXD88_001764"
     CDS             complement(3338..5356)
                     /gene="uvrB"
                     /locus_tag="PXD88_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL6281320.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            complement(5595..5831)
                     /locus_tag="PXD88_001765"
     CDS             complement(5595..5831)
                     /locus_tag="PXD88_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL6281321.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            5994..6839
                     /locus_tag="PXD88_001766"
     CDS             5994..6839
                     /locus_tag="PXD88_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL6281322.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            6850..8046
                     /gene="efeB"
                     /locus_tag="PXD88_001767"
     CDS             6850..8046
                     /gene="efeB"
                     /locus_tag="PXD88_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL6281323.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            8057..8676
                     /locus_tag="PXD88_001768"
                     /pseudo
     CDS             8057..8676
                     /locus_tag="PXD88_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(8712..9530)
                     /locus_tag="PXD88_001769"
     CDS             complement(8712..9530)
                     /locus_tag="PXD88_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL6281324.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(9542..10141)
                     /locus_tag="PXD88_001770"
     CDS             complement(9542..10141)
                     /locus_tag="PXD88_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL6281325.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            complement(10138..11685)
                     /gene="sbcB"
                     /locus_tag="PXD88_001771"
     CDS             complement(10138..11685)
                     /gene="sbcB"
                     /locus_tag="PXD88_001771"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL6281326.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
BASE COUNT         3477 a         2596 c         2474 g         3356 t
ORIGIN      
        1 tattttaacc agcagataac agccctaaaa attgcttttc acttcttaaa tagctacgca
       61 aacgtttgct ttgtatgcta tgattacact gttttacatt agtatcataa ggatttaaaa
      121 tgccaaataa agctgaaatt gcgatcgtaa tgggatctaa gagtgattgg gctacaatgt
      181 ctgaagcaac ccaaatatta gaccagttcg gtttgagcta tcacgttgaa gtcgtctcag
      241 cacaccgcac accggacaaa ctcttttctt ttgctgaaac tgcagagact aacggctata
      301 aagtgattat tgccggagcc ggcggtgcag ctcacttgcc cggaatgatc gctgctaaaa
      361 ccattgtgcc ggtgttaggt gtgccggtaa aaagctcaat gttaagtggt gtagatagcc
      421 tctattcgat tgtgcaaatg ccgaaaggta ttccggtcgg tacgctcgca atcgggccgg
      481 caggtgcagc aaatgcaggc ttattagccg ctcaaatttt agcagccttt aaccctgata
      541 ttgcagagaa actgcgtatt ttccgtcaaa cccaaactca gatggtatta gataatcctg
      601 atcctcgtgt tgaataacta ttgtataaaa gatgtctaaa aaattattaa tcctccacac
      661 tggtggtact atttcaatga aagaagggga agacggtaag gtctcccctt ccaatgaaaa
      721 tcctctcttg gctgccttag aacgtttaaa ccacccagca aaattggcgc aagaatcgtt
      781 atttaatatt ccctctccgc atatcaatat cgagcattgg caacagttaa aaatgcggat
      841 tgaaaaggca gtgaatgagg agaatgtcga tggcgtagta atcacccacg gcacagatac
      901 cttggaagaa acctcctatt ttctggattt agccctcagc gtaaatatac cggtagtaat
      961 taccggagca atgcgttcca gtaacgaact gggtgctgat ggcttaatca atctacaaag
     1021 tgcgatttta gtggcgttaa atgaagaaag ccgagataaa ggcgtgttag tggtgatgaa
     1081 tgatgaaatc cacaatgcta aatttgtgac caaaacccac accactaatg tggcgacttt
     1141 ccaaacccca acctttgggc cttgtggctt agtaacgaaa gaatctgtca tttttttcca
     1201 aaaattgacc acttacgaac gttatccaat tcaacaagta actaaagcta acgtgcaact
     1261 actgaaagca tacgccggaa tggatagttt tctgctggaa caattagcga aaagcaaatg
     1321 cgatggtgtt gtgattgagg cattgggtgc aggtaattta ccccctagtt gtctggctgg
     1381 tattgaggct ttagtgaatg ccaatattcc aattgtaatt gtttctcggg cattcaatgg
     1441 tattacccaa gatgtctatg attatgtagg cggtggaaaa cagttaaagc aaaaaggcat
     1501 tatttttacc aaaggcttaa gtgggcaaaa agctcgcatt aaacttatgg tcttactcag
     1561 ccaaacctta gacaaaccac tatcagacta tttctaaccc attgagaata ccacgatgca
     1621 aaaaagtgca atctacccac ctgtgtatgt attaggcaac ggccagctcg ggagaatgct
     1681 acgctacgcc ggagcaccac ttgatattga agtcaaaccg ctggctttcg atgcccctgt
     1741 gtttgatatt gagccaaaca gcattattac cgcagaaatc gaacgttggg cagatacgcc
     1801 tttaacgcaa ttactcggta accacccgaa ttttgtgaac ctgaatgttt ttgggaagtt
     1861 agccgatcgt tttacgcaaa aatcactact tgatgaactc catcttgcga cttcaaaatg
     1921 gcaactgcta gaaaatgccg aacattggca agatattttt cagcatattg gcgaaaaagt
     1981 agtggttaaa cgccgaaccg gaggatatga cggacgtggg caatggattg taacgcaaga
     2041 ctcgattcat caaattacac ctgaattatt tggcgaagtg attgccgaaa aatttatccc
     2101 gtttgagggg gaaatttcca ttgttggggc gagattccgt gacggctcaa cccgtttcta
     2161 ccctatttct cacaatttac aacaaaacgg cattctacgt tactccgtct ccgatgtgaa
     2221 tttaccgaac caagccctct accagcagca agccgaacag atgctcgcta cggtaatgca
     2281 aaaattagag tatgtcggcg taatggcaat ggaatgcttt gttgtgggcg acaagctact
     2341 catcaacgag cttgcccctc gagtgcataa cagcggacac tggacacaac tcggctgtgc
     2401 cattagccaa tttgagttac atttacgggc attattagat ctacctacgc cagcactcga
     2461 ccaaattgcc ccaagcgtga tggttaattt aataggcatt gaacataaca agcagtggct
     2521 aagcctccca tttagccaac tacattggta tggcaaagaa gtccgagctg gtagaaaagt
     2581 tgggcatatc aacctcactc acaccgataa aaacggctta attgaactac tggaacaact
     2641 cagaccgagc ctaacggaag atttccattc gggattagat tgggcaatca ataagctcaa
     2701 gtaagcggtc ggattttgta acttttttgc aaatctgttt acccgatggt gcgagcttcc
     2761 tcgctcgtac caaacaagcg gtcgacttag tgctaaaatt tgcaaaataa ttcaacataa
     2821 tggctacttc cggtcatcat cttgatctga aaacccctca gggtggatat ggctatcaaa
     2881 aagcattttc ttcctccgag aaaacagatt tcttcacaag aatcttagag ctgctcttta
     2941 tttgtttcct taggcaataa cttcgagcaa atgataatag agagcatagc cccaaatcct
     3001 gcacctgaaa tcttcagtga tttatcataa actgccggct caaaataaat aaatcccaaa
     3061 atccaaatta aaaagaaccc catataaatc caaaacactt tatcttcatt tttctgggta
     3121 taacctttat aaacaataac cgcactactt accatcatcg gaataataaa agtcaaaaac
     3181 acattattga acagggtacc aaatcgttca aacggattac tgtactcccg cataatatgg
     3241 tgggcaatcc agataaccac cataaaaaca agttgagaga aaataacaat tttggcaaat
     3301 aagattaatt ttgaaaataa tgaacgagaa atcatattta aacctccaac aaatacgcct
     3361 ttaaatgctg caacttatcc cttaccgcag ccgctttttc aaattccaga tctttcgcaa
     3421 aatcacgcat ttgttgttcc agcgttttaa gctctttttc cagttcttta cgggatttcg
     3481 gcttgtagtc ggttgcagaa ttttcggctt ttttgaccgc ttgtttgccc cgttttggct
     3541 tgtcggattg tccgatgtcg agcaattcac ccactttttt gttcaacgct tgtggcgtga
     3601 tgccgtgttc ttcgttgtat ttcatctgct tttcacggcg gcgttcggtc tcagtaattg
     3661 ctttttgcat tgagttggta atgcggtcgc cgtataaaat cgcttttccg ttgaggtttc
     3721 gggcggcacg tccgatggtc tgaattaacg agcgttcgga acgtaaaaat ccctctttat
     3781 ccgcatcaag aatggcaacc agcgacactt cgggcatatc taagccctca cgcaataagt
     3841 tgatccccac cagcacatca aacattccca ttcgtaaatc gtggataatt tcgacccgtt
     3901 ccaccgtgtc aatgtcgcta tgtagataac gaactcgtac gccatgttcg tccaaataat
     3961 cggtgagatc ttccgccatt tttttggtga gtgttgtcac cagcacccgt tcgtccaccg
     4021 ccactcgttt gtgaatttca gacagtaaat cgtccacctg cgtagcaacg gggcgaactt
     4081 cgataatcgg atcgagcaag ccggttggac gaactacttg atccaccaca tcgggatttt
     4141 tctccaattc atacgccccc ggtgtggcag aaacgtaaat cgtctgtggt gaaagacgtt
     4201 caaactcttc aaatctcaac gggcggttat ccagtgcaga cggcagacgg aaaccgtatt
     4261 gcaccaatgt ttcttttctc gctcggtcgc ctcgatacat tccgccaatt tgtggcacag
     4321 taacgtggct ttcatcaatc accaaaatac cgtccgccgg catataatca aacagggtcg
     4381 gaggggcttc gccctctttt ctgcccgaga gatagcgtga gtagttttca atgcccgaac
     4441 agtagcccag ctcgttcatc atctcaatat caaactgcgt acgttgggcg atccgctgct
     4501 cttccagcaa tttattctct ttgatgaaat aggtgcgacg gtcggcaagc tcgaccttaa
     4561 tttgctcgat tgcctccaaa atccgttccc gaggggtcac atagtgagtt ttcgggtaaa
     4621 tggtatagcg aggcaccttg cccaagctat gccctgtaag cggatcaaac agcgacagat
     4681 tttcgatttc atcgtcaaac agctctaccc ttaacgctac ttcatcgctt tcggcagggt
     4741 aaatatcaat cacatcgccc cgcactcgga aagtcgaacg ttggaacgcc tgatcgttgc
     4801 gagtatattg caattcggca aggcgagaga gaatttcacg ctgcccaatc atcgccccca
     4861 cttgcaaatg caacatcatc tgcatataag cgtccacatc acccaagccg taaatggcag
     4921 aaacggacgc cactacaatc gtatctcggc gttccaaaaa ggatttggtt gcggaaagtc
     4981 gcatttgctc gatctgctca ttgatagagg catctttctc gataaaggta tcgcttgccg
     5041 gcacataggc ttcgggctgg tagtaatcat agtaagagac gaaatactcc accgcatttt
     5101 ccggaaagaa cgctttcatc tcggcataaa gctgggcggc aagggtttta ttcggggcaa
     5161 gcaccatcgc cgggcgattg agcttggcaa tcacattagc aatggtaaag gttttccccg
     5221 agccggttac gccaagtaag gtttgatgtg ccaagccgtc atttaagcct tcggtcaatt
     5281 tggcaatcgc acttggttgg tcgccggagg gcttgaaagg agaatggagg ataaagggtt
     5341 tgccttgctt gctcatagaa aatcctgtct taaaaaatcg gtttatttta gcacaagcaa
     5401 gcggtcgttt ttatcgggat ttttgcaaat ttattgtaac tgcttatatt gatccattct
     5461 tggatctaac accctaacaa taaagatacc ttttgggatt ggtttataat aaatagaatg
     5521 tgagcggtgg taatgacagc gtaacaaagg gcgaataaag taacgctaaa tctcgctctg
     5581 ccctaacaga aagtttatac attacgtttt gccttgctga taatagattg aacggtttcc
     5641 tcagaaacac cgctttctaa gccttcatca attaaggctc ttagctgaat tagttgctgt
     5701 tcttgtgctt ccaatatttt taatgcggca ctgatgacct cgttggtcga accataacgc
     5761 ccactttcaa ccatttggtt cacaaattgg cttaatggct cagctaaagt tacgctggtt
     5821 gttctactca ttactattcc tatcttattg attattgagc agattgtaat ggctctaatt
     5881 tagataagca agcggtctat ttttagcaat aatttgcaaa acaaaatgtg atttacatca
     5941 caaaatcagc attatttttt gcgaataatt cgcaataagg atattatgtc gcaatatttt
     6001 tattaaaagg aaatttctat gcgtttaacc aaacttgctt ttgcactttt gcactttctg
     6061 gcttttttgt ggctactcaa gcggcagctt tagacttaac taaggaaacc gaggcttata
     6121 aacaatttgt ggtagaacag attgaccaac tggttaccga tacggaaaaa tttgtcggct
     6181 acttaaacaa aggcgatgtg caaaaagcga agaaaattta cccgcttgca agaatgtatt
     6241 ttgaacgttc tgaaccgatt gcagaaagtt ttggcgattt agaccctcgt attgatgccc
     6301 gtctggcaga tttagccgaa gaaggtaaaa ccgagaaaga ttggtcaggt ttccataaaa
     6361 tcgagaaagt attgtggcag aaaaacacca ctaaaggcac aaaagcaacg gcagaacaat
     6421 tattaaaaga tgtaaaagag ctgcgtgcga aaattcccac tgcagaagtt acccctgagc
     6481 cgatgattac cggtgcggta gatttattaa acgaagtttc tactactaaa gtaaccggtg
     6541 aagaagaaat tttctctaaa accgaccttt acgattttaa agccaatatt gaaggtgcag
     6601 aaaaaatcta tgagattttt aaaacgcaat tagagcaaat tgatgccaaa ctctcaacag
     6661 aaatcggctc tcgttttgcg gctgtcaatg cgctgttagc aaaacacaat aaatctaaaa
     6721 ccggttatga ttatgtgcct tataacaaac tgtcaaaagc ggatattaaa gcgttagcag
     6781 aggctgtaaa ccaattaggc gagccgttag ctcaacttgg cgtactttta aataaatagt
     6841 ggagcaaaaa tgatggcaga aaccacttct cgccgtgatt ttttaaaaca taccgcatta
     6901 gtaggagcag gcttattgtc tgctcctgct ttcgctttgg aatcacgaca aatatctgaa
     6961 aaatctcaaa atcaatacga cttttacggc aaacatcaag ctggtattgt tagccctgca
     7021 caaaaacata tctacttttt agtgctggat ttagacacca ctgacattgc caaagtaaaa
     7081 acattgtttc aaaactggac ggaatatagc cgtaacctca cgcttggcaa aaatgtgaaa
     7141 ccttatagtg ctaatgctta tgttccaccg gcggataccg gtgaggcaga tagcctttcg
     7201 gcacagaatc tcactcttac ttttggcgtc agtgccaatt tctttacaaa gctcggcatt
     7261 gaaaaacata agccgaaaga actgaatgat ttaccgcatt tccctcgtga tcaactacaa
     7321 gcagaataca ccggtggcga tatttgcatt caagcctgtg cagacgatcc gcaagtggct
     7381 ttccacgctg tgcgtaattt ggtgcgtgtt gcccgtggtg aaatcaaaat gaaatggtcg
     7441 caaatggggt ttaactcctt tgccaatcaa gacacacctc gtaacttatt cggttttaaa
     7501 gacggcactg ccaacgcaga aagtttaaaa gatcaggaaa atacggtatg ggtgcaacaa
     7561 gagggctggc tcaaaggcgg ttcttattta gccgttcgcc gtgttaaaat gttcttggaa
     7621 acttgggatc gcacccatct ccaatcccaa gaagaaacct tcggtcgtca ccgtgattcc
     7681 ggagccggaa tcgggcatca gcacgaattt gataaattag atttagccaa aaaagacgaa
     7741 aaaggcaatg cagtaattcc ggaagtttca cacgctcatc ttgccaataa aacggggctg
     7801 aaaatcctac gccgttcatt ctcctattca agcggtattg atgataaagg gcaatttgat
     7861 tcagggttgt tgtttgtctc tttccaacaa agtccggagc aatttatcaa aatccagaac
     7921 gctctcggca atgtggataa aatgaatgaa tacatcactc atatcggcag tggtttattt
     7981 gcctgttttg ccggtgtgaa agatgaaaat gactaccttg gcaaagcgtt gtttgattta
     8041 atttagggaa aaggaaatga aattaaaagc attagtgcta attccgttac tcttttcgag
     8101 tacaggattg cttgccaaag tgaatgtcag ccccttattt gttcagcttt ccgatgcaat
     8161 ggcagagagt aaaaaagggg aatttgcaaa atccagccaa aatttgaccg ctttacagca
     8221 cgattttgag cagattagcc agcacgattc cctcgccgga gttgaagtac agaccgctct
     8281 gaaaaaagcg attgaaacac ccaatgctga aaacttagag agcctttcta aaaactctat
     8341 gcgtttgaaa aagaacaaaa ccctagcggt tatgctgaaa aacatcagga ttttgtggca
     8401 aaaatgacgc cgctttatgc agaacttgct caaaccgtgc caactcaaga aatcgccaaa
     8461 atcaaatggg cggcttatca gtttggtaag aattgggtaa aacaggaaaa agcagtacgg
     8521 gaaatcagtc ttccccatta tggcaaattt gagcgtattc ttggtttaat gcgaattaat
     8581 ctgaacgctg aaaagccgga tatggcaaaa atcagtgaac tggtttccga actaggtgtg
     8641 gtaatggcag actttaagca agttaaagtg aaatagtaaa aaatcggggc aaattatttg
     8701 ccccgataac actaaaataa cgtccaaatc ggtttacatt cttggggtaa ttccaaactt
     8761 ttaccgagct caatccagcc agttgggtag tggaaatcag aaccgaccga gccatataaa
     8821 tcaaactctt ttgcccaacg ggcaagtaat tgccgttgat caggtgtttg tccgcagcct
     8881 gatacttcaa tgccatcgcc tccggcttgt ttgaaatctg cgattaaacg gcgaatccaa
     8941 cgagcagtca ttttatagcg tagcgggtga gcaatcgaaa tcacaccgcc tgaggtgtgg
     9001 gtaacattca ccgcgtcttc taaactactc catctcggtt tcacataggc aggtttcccc
     9061 attcccagat aacgcttaaa ggcgtgttca atattgcgga catagccttg ttcatacaaa
     9121 aaacgcccat aatgtgcccg agttacttcc cctgttgcca acgcttttgc cccctcatag
     9181 gcatttgcaa tcccgacttt tgctaatttt tcaccaattt cgaccgctct ctcttccctt
     9241 aattgggctt ggttatccaa aaacttcacc agctcctcgt tgttttcatc aatattcaac
     9301 gccgcaagat gaatactttt ttcttgccat aaaatcgaaa tttccacccc agagataagc
     9361 tcaagcggtt gattttgggc aaaatttttc gcttcttgaa tgcccgaaat cgtatcgtga
     9421 tcagttaaag ctagcattgt taccccttgc tctaccgcac gttgtaccaa ttcagtggga
     9481 gaaagtacgc catcagaggc ggtactgtgg gcgtgtaaat catatttcat tttatttatc
     9541 cttaaattaa gccggcagtc ctgaaaaatt ggcgataggc ttcggttttg ttggctaagc
     9601 tgagtggata agccctcgac gtcgaaggca ggcgatataa ataaagttct cttgtggcgg
     9661 aataaggata gaccacccat tcgttggttt tcggagcttt gtgtttttcc ggcaataaac
     9721 cgagcaacgt atcggttgcc aaaccacctg tggtaaatag ccatttcagt ttgggtaatt
     9781 tgagcaacag ttcgtccata tcgataggat caacaatttt taaatcttta tctgaagcgt
     9841 ttccttttaa acgaatcgct gtttttgccg aagaacagag cgcaacgccc ttttctcgca
     9901 aaaacgcctc aatccgaatc ggatcaaagc gtttttcttc accaactcga aaatagttag
     9961 ggtcagcata aaaaatattg cccataattc gccacatatc attttgaaaa ttcgggtaat
    10021 gaaattccat acaacgcttt tccgatgtag gtggaaaagt gccgaccatt accaccgttg
    10081 cttgttcagg taaaataggg tcaaacgggt gctgttctag cggtaaatta tccattgtca
    10141 tttaatcaac tcttttaaca tcttgagctt ttcggtttta tctaggggct gttccgctac
    10201 tctgttaagc tcgctcagca atttttcatc ttttgcaaca ttttgacgat aaatgaccgc
    10261 ttgttgttgc gaaatctgct cggcgtaagc ggtcaaattt tctaataatt ttaccttttc
    10321 cgggttgtcg tgatgttgtt ggaacaagtc gtcaatcgat tgggcgaact gcgctgcttt
    10381 tgcctcaatt tgctggttgc aatgtttctg ccatttgatc tgctcggctc gactgagtgt
    10441 ttgtggatag tgccttgctc ggtaatggaa tagtaacgcc tctactcgag ggtcttcaaa
    10501 tttcaagccg tggttggcta aatcttcagg cggtagcgtg cgtaaaatcg ccatattatt
    10561 tttatccgca ggcgagaaaa agccgtcata caaagtggtt tctacattgg tcgaaggctc
    10621 aaacgtgcgt tcttcattaa aaatttcaat cactttttcc cgaatcagcg atttctgtgc
    10681 ttttaaagtt ttcaaatttt ccaaacataa agctctgtct atgcctaaac gttctgcatt
    10741 ttcaggcagt aaggtttttg ccggtgctaa aatcgggcat ttattaatat gcactaattt
    10801 taacggcaca ggtaactcat tttcggctaa ttcatctcgt ttggtgtata aacgctgacg
    10861 taaaacctct gcattttcag tcaataagcc attcatatcg cccgataaat cacacacaat
    10921 tacggcattt tgattagttg agtgccaagc cagtggcaca acccaagcgg tatttcctcg
    10981 atagttgccc agcataccgg aaacgtgcac aagcggtgtc atttcaccag tgtcaattaa
    11041 cttctctact tcttttttac tgcgtaaatt aaagaaaaaa tcgaacaact ttggctgttt
    11101 ttgcttaatt aattttgcca ttgcgatggt ggcatacaca tcagacatcg catcgtgtgc
    11161 attttcatgg gcaatgccat tggctttggt gaggttttcc aatttaaaac ttggcatacc
    11221 ggtttcatct gttggccatt caataccatc aggtcttaac gcataacagg cacggactaa
    11281 atctaacaag tcccaacgag aatttccgtt tttccagcta tattcgtaag gatcgtaaaa
    11341 attgcggaag aaggtataac gggtcatctc atcatcataa cgaatattgt tataaccgat
    11401 agtacaagta ttcgctcggc taaattcagc gtgaattcgg gctgcaaatt ccggctcaga
    11461 tacaccttca gcgttacatt gttgcggtgt aatcccggta accatcaccg cttcggggct
    11521 gggtaaataa tccggcgttt gcttacaaaa aaacattacc ggttcaccga taatattaaa
    11581 atccgcatcg gttcgaatac cggcaaattg tgccggacga tctaacgccg gactcacgcc
    11641 gaaactttca taatcgtaaa agaaaaaaga gaatttatcg ctcattcgtt caatttgtta
    11701 gaaaaaattg ggctgattgt agcacagtaa ggcagaaagg agggaataca agcggtcaat
    11761 ttccgttaga aatttgcaaa tgctaaaata aaaaaagccc ctaatcaaaa aagcgaaaag
    11821 gggcggaggt cttacctaat gataatatta tttttataaa tcaattagtt aagatgtttt
    11881 tgtcgtaaaa atatcgagat tat
//
LOCUS       DANLXK010000080        11737 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.081, whole genome shotgun sequence.
ACCESSION   DANLXK010000080 DANLXK010000000
VERSION     DANLXK010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11737
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            117..2009
                     /gene="mnmG"
                     /locus_tag="PXD88_001772"
     CDS             117..2009
                     /gene="mnmG"
                     /locus_tag="PXD88_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL6281327.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2104..2328
                     /locus_tag="PXD88_001773"
     CDS             2104..2328
                     /locus_tag="PXD88_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281328.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2341..2955
                     /gene="rsmG"
                     /locus_tag="PXD88_001774"
     CDS             2341..2955
                     /gene="rsmG"
                     /locus_tag="PXD88_001774"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL6281329.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3223..4671
                     /locus_tag="PXD88_001775"
     CDS             3223..4671
                     /locus_tag="PXD88_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6281330.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4694..5740
                     /locus_tag="PXD88_001776"
     CDS             4694..5740
                     /locus_tag="PXD88_001776"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL6281331.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5761..6381
                     /locus_tag="PXD88_001777"
     CDS             5761..6381
                     /locus_tag="PXD88_001777"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL6281332.1"
                     /translation="MGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAETKVKFT
                     PFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYLKDKAIV
                     IPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYGGFFTGA
                     FVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6400..7380
                     /locus_tag="PXD88_001778"
     CDS             6400..7380
                     /locus_tag="PXD88_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL6281333.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7442..8782)
                     /locus_tag="PXD88_001779"
     CDS             complement(7442..8782)
                     /locus_tag="PXD88_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6281334.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8972..10045)
                     /gene="glpQ"
                     /locus_tag="PXD88_001780"
     CDS             complement(8972..10045)
                     /gene="glpQ"
                     /locus_tag="PXD88_001780"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL6281335.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10115..11560)
                     /gene="glpT"
                     /locus_tag="PXD88_001781"
     CDS             complement(10115..11560)
                     /gene="glpT"
                     /locus_tag="PXD88_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL6281336.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
BASE COUNT         3402 a         2462 c         2508 g         3365 t
ORIGIN      
        1 atttagtgtc gcatttagat cttaacctct ctaaaaatct atttcccaga tgatcccttt
       61 ttacgctaaa atatgcgttc atttttcagc agaatttgta agatagtaga agagatatga
      121 tttacaacca aatttacgat gtgatcgtgg tcggcggtgg tcacgccggc acagaagcgg
      181 ccctagcacc ggcacgaatg ggcttaaaaa ccctgatttt aacccacaat gttgatacct
      241 tagggcaaat gtcgtgcaac ccggctatcg gagggatcgg caaaggccat ctggttaaag
      301 agatcgatgc gatgggcggt ttaatggcaa aagcaacaga cgttgccggg atccaattcc
      361 gtaccctaaa caactcaaaa gggcctgcgg tgcgtgccac ccgtgcccaa gctgaccgtg
      421 tgctttaccg taatgcggta cgcactgcgt tagaaaatca accaaattta gatattttcc
      481 agcaagaagt agtggatatt ttggtggaaa acaaccgtgc agtgggtgca gttaccaaaa
      541 tgggcttaac gtttaaagcc cgtgcggtag ttttaaccgc tggtacgttc ttagcgggta
      601 agatccacat tgggttggat aactatgcag gtggtcgtgc cggcgatcct gctgcaacaa
      661 tgttggcaga tcgtctgcgt gatctgaatt tgcgtgttga tcgccttaaa acaggtacac
      721 cacctcgcct cgatgcccgt accatcaact ttgacgtact tgccaaacag cacggcgatg
      781 aggtgttacc tgtcttctct tttatgggcg atgtctcaca gcacccacgc caaattccgt
      841 gctacatcac ccacactaac gatcaaaccc acgatttaat tcgcaacagt cttgatcgca
      901 gcccgatgta caccggtatt atcgaagggg ttggtccacg ttactgcccg tctattgaag
      961 ataaagtaat gcgttttgcc gatcgtaata gccaccagat ctaccttgaa ccggaaggct
     1021 taaatacgat tgaggtttac ccgaacggga tctccaccag cttgccgttt gatgtgcaaa
     1081 tggggatcgt caactcaatg aaaggcttgg aaaacacccg catcatcaaa ccgggctatg
     1141 cgattgagta cgactacttc gacccgcgtg atttaaaacc aacccttgaa accaaagcga
     1201 ttgacggttt attctttgcc ggacaaatta acggcacgac cggttacgaa gaggcaggtg
     1261 cgcaaggttt gctggcaggg attaacgcag cgttacaggt tcaaggtaaa gaggcgtggt
     1321 atccaacccg tgatcaagcc tacaccggcg tgttggtgga cgacctctgt acattaggca
     1381 ccaaagagcc ataccgtgtg tttacctctc gtgccgaata ccgtctgttg ctgcgtgaag
     1441 acaatgcgga cattcgttta acaccaaaag cccacgaact aggattaatt gacgaggcac
     1501 gttgggtgcg tttcaaccaa aaaatggaag cgattgagca agaaagagct cgtttgaaat
     1561 ccacttgggc acatttgcaa atgccaaatc tggacgaatt gaacgcgtta ttggctaatc
     1621 ctttagcccg tgaagcaagc ggtgaagact taatccgccg tcctgaaatg agttacgaaa
     1681 agctgaccca aatcgcccta tttgcccctg ctattgaaga caagcaagtg gcagaacagg
     1741 tggaaattgc gatcaaatat cagggctata ttgagcatca atacaacgaa atcgaacgcc
     1801 ataaacgcca cgaaaacacc ctgattccgg tagagtttga ctacgacaaa gtcgaaagcc
     1861 tctccaacga agtgcgagct aaattgatgc aacaccgccc tgtctctatc gggcaggcaa
     1921 gccgcatttc cggcatcaca ccggcagcga tttccattct gttggtgaat ttgaagaagc
     1981 aaggaatgtt gaaacggggt gagctgtaaa tactacaagc ggttggtttt gcagaaattt
     2041 ttgcaaaatt gaccgcttgt attctttgga gaaggaaata cccgaactac cgccgtattt
     2101 ttaatgatat atctgcgtaa actcggtttt tcgccgttcg atcaccaaat gtttgcccaa
     2161 ccttcgtggt atttctgcaa tgcacttgtt cataccaatt atgaaaatct gcgacaaggt
     2221 gtatttgtga ctaaagcgta tttagtgatg tttcttgaaa atttattgtt tgaaaaaagt
     2281 cattcgttaa gtaatcgggc attgcgtatt aatgaaaata atgattaagg aatttgcaaa
     2341 atgttagcta aattaaaccg cttgcttgct caagccgaaa taaatttgac cgatcaacaa
     2401 aaagagcagt tagttggttt tgtgagatta ttggataaat ggaataaggc gtataacctc
     2461 acttccgttc gcaaccctga tgaaatgttg gttaaacata ttttggacag ccttgttgtt
     2521 agtcgtcatt tacaaggcga aacgtttatt gatgtcggca cggggccggg gctaccgggc
     2581 attccgctgg cgattgctaa ccctgataaa cagttcgtgc tactagacag cttaggcaaa
     2641 cgcatcactt ttatcaaaaa tgcgttgcgt gagcttggta ttaaaaacgt taccccagtg
     2701 caaagtcgag tggaggaata cactgaaagc cagtttgacg gcgtattaag ccgagccttt
     2761 gcctcgctta atgatatgat cgactggtgt tatcatttac cgactgaaaa cggtaaattt
     2821 tatgcattaa aaggcgtgta tgatgagcag gaaataattg aaatcaaaca accgattcag
     2881 ctagtggaag tgattaagct tgaagtacct gagttggtag gagaacggca tttagtagtg
     2941 ttgaaaaagc cctaatacat tggaagttta atgatacaag cggtcgaatt tgtaaatttt
     3001 tttgcaaatc tgcctgcttg tgttaactat ttttcataaa gcatacctgg ttaataaggt
     3061 gtgctttttt tataacctat tatttcatct gatttatttc tattttgtga tgtgcttcac
     3121 aaaaacaaaa aaacataatg tagtaaaaaa tattcgtaat tgaagccctt atttctttac
     3181 ctgaaaataa gcgaacttaa ttatataacg aggaggttcg taatgaacag ggtaacaaat
     3241 aaggcagatg agtttgctaa actcagtacg tttgaacgta ttgcttatgg tagtggcgac
     3301 ttagcccaaa atttagtttt tggtacagtt ggtggtttct tactcactta cttaactact
     3361 gtaaacggca tttctgccgt agcaggagca acgattttct taattgtaaa atggggaaat
     3421 gtgttttggg atccgtttgt cggtgccttt attgacaaaa gcaagccctc agcacagggt
     3481 aaataccgcc cgtatttact gaaatttggg attcctcttg tggttttagc ttcactacta
     3541 tttcttcctc ttgaatcagt acgtggctca gtgatttatg ctttcctttc ttattttgcc
     3601 actgcgatgg tttattcttt tgttaatatt ccttatggct cgctttctgc ttctcttact
     3661 cgagacacag acgaaattgc taaattaacc acaacccgta tgacaatggc aaatatcgct
     3721 aatttgtttg tttatacctt attcccactt tttgtgcagt tacttgcacc acatgccgaa
     3781 ttaaaaaaca ccggcttttt cggtattgag ctctatttag gtgattatat gtctgctgct
     3841 gcaggccctg cttggtttaa ggtttatgcg gtctatatgg taattggatt tgtggcgtta
     3901 atgctctctt attttggtac taaagagcgg attattccaa cagcggaaga aacagataaa
     3961 gtcaagtatt cagatttagt taatgaactc aaacgcaatc gtccattaca gattttaggg
     4021 ttattcttct taataggttt tacttttatg ttcttcggaa atacggtgtg gcctttttac
     4081 ctaaaatata atattgggca ttctgagtgg attgcctccg tcggtttatt aggctctatc
     4141 cctgggattt tccttgtatt cttatggccg aaactacgtc gcactatcgg taaaaagaac
     4201 tttttctatc tatttttagg gattttcgtt ctagggcaac tttgtctatg ggtatggcaa
     4261 tttgactcct tcaaatactc tccaacctta ggctatatcg gtcgtttctt acaacaatgg
     4321 ggattaactt ctgctaccgg ttttatgtgg gcgttagtgc ctgaggttgt tacctttgga
     4381 gagtttaagt cgaaaaaacg tgtagcaggt attattaatg cgttaatggg cttgttcttt
     4441 aaaatcggct tggcgttagg cggtattatt ccgggttata ttaatgcggt ttatggtttt
     4501 aacggctcgc ttttggctca aaccgaagag gctttatttg gtatcaatct ttcaatgatt
     4561 tgggctccaa ttattttagc gattattgca ggatttgtga tgagtcgcta tccgttaagc
     4621 gatactgata ttgatcatat caacgaaaaa attactgctt attccaaata atttgagtat
     4681 aggagaatag attatgcaaa ttcaaaatcc agttttaccc ggtttcaatc cagatccatc
     4741 tattgtgcgt gtgggtgata cttactacat tgcaacttct acttttgaat ggtttccggg
     4801 agtgagaatt cacgaatcga aagatttagt gcattggaat ttagttaaaa atgtcttaga
     4861 tacaaccacg ttgttagata tgcgaggcaa tccctcttca ggtggtatct gggctcctga
     4921 tctttcttat gcggaaggta aattttggtt ggtttatacc gatgtaaaaa ttacagacgg
     4981 tgcattcaaa gatatgacta actatctaac tactgccaaa gaaattcaag gtccttggtc
     5041 agctccgatt aaattgaatg gtattgggtt tgatgcttcg ttgtttcacg atgatgatgg
     5101 gcgaaaatat ttagtgcaac agacttggga tcaccgtgaa tatcatcacc cctttgacgg
     5161 tattacgtta acggaatttg atgttgccac aatgaaactc aaacctgaaa cccagcgtac
     5221 gatttttgaa ggtacagaag tgaaattggt ggaaggtcca catatttata aaattaatgg
     5281 cgaatattat ctgtttgcgg cggaaggcgg cacagtattt acgcatcaag aagtagtggc
     5341 tcgttctaaa acattggagg ctcactcttt ccaactggct ccaaatacac cgtttattac
     5401 taattttgat acacctaatt cttacctaca aaaacaaggg cacggttcat tagttgatac
     5461 cccaagtggt gaatggtatt acgcttccct cacagcaaga ccttggaatc atgcaacaga
     5521 atccgcaacc gatcctcgtg gttggtcaac attagggcgt gaagccgcca ttcaaaaagt
     5581 agaatttgat caagacggct ggccttatat tgtgggtgga cacggtggaa aaacctttgt
     5641 agaagcccca aaagatgcaa tttttaccga agctcctatt gatcattctc aacacgatga
     5701 gtttgatagc tcaacgttag atattaactg gaacacttaa gagtgccttt tagtaaagag
     5761 atgggcgaag ttggtaatgg tgttttaaaa ttgattgggc gaggctctct tgcaaataca
     5821 cacgatttat cgctaatcgc acgccgttgg caagccttct attttgatgc ggaaaccaaa
     5881 gtgaaattta caccgttttc ttatcaatct atggcaggtt taactaacta ttacaatcac
     5941 tcacactggt cttggatttt catcaccaaa aatgatcaag gacaacaggt gattgaagtt
     6001 gcagaaaata aaggtggact cagaaatggg caatatactt cttaccttaa agataaagca
     6061 attgtcattc ctgatggaac ggagtatgtt tggtttaaga ctaaagttcg gaaagaaact
     6121 taccgttatg aatattcatt cgatggcaaa caatggcaca ctattccggt tgaattagat
     6181 gcggcagtgc tttcagatga ttatgtgtta cgcagttatg gcggtttctt cacaggagct
     6241 tttgtcgggc tggctgcagt ggattactcc agttatgaat ctacagcaga atttagctac
     6301 tttgactata aagagttagg cgataagcaa cttacagacg gctcattctc ttgggaaaaa
     6361 tctgaaagtt gctttggcta aaatgaggag aatatcacaa tgaaacaacg cagatttggt
     6421 aaaaccaaca aaatggtgtc agaaattggg ttaggcactt ggcagcttgg gacgaaatgg
     6481 ggtgaaccgt tcaatcatca agaggcgatg gcaattttag aaaccgctta tgagcaaggc
     6541 atcaatttta ttgataccgc tgatgtgtat aacaacgggc aaagcgagaa agccattggt
     6601 gatattttga aaaaataccc tgactttttc tatgtcgtta ccaaatgtgg acgtgcgtta
     6661 aacccgcata ctgctgaaat gtacacgcca caggcaatcg aaaaatttgt tgatggtagt
     6721 ttaagccatc ttggcacgga aaagttggat atgattttgc tccactgccc gccaacgttg
     6781 gtttatcgca atgatgagat ttttacgaaa ttggaacagc ttaaagccgg cggaaaatta
     6841 atagactacg gtgtgagtat cgaaacggca gaggaaggct tgttggcaat ggagtatgac
     6901 attgcggcaa tggaagttat cttcaatatg ttccgcttaa aaccattgga gcaactcttc
     6961 ccaaccgctc agcaaaaaaa tgtgggtatt atcgcccgtg tactgttggc aagtggtttg
     7021 cttacaggca gatataatgc ctgcacccaa tttggcaaag acgaccaccg cacatttaac
     7081 cgcaatggtg aagccttcga taaaggcgaa accttttcgg gtgtggatta tcaactcggt
     7141 ttacaagcgg tggaagaatt gaaagcccta ttcggcacgg aagatttaat tccttacgcc
     7201 ctacgttggg tattgatgaa tgaagctgtg agtacagtaa tcccgggagc aagtaaggtt
     7261 tcacaagtaa ttactaacgc agcggtggat aatttccctc cactcactga aaatgaaatg
     7321 caaaaagtgg aagatattta caaccgctta attcgcccaa gtgtgcatca tttgtggtaa
     7381 tttatccaac gctataaaaa atggaactct aacttgagtt ccatttttgt caattttagc
     7441 cttaaacctc taactgttta gaggttttct taaacagagt caatgcaata aacgcaaagg
     7501 ctaagaaaca ggaaaggatc agggcataga aaccaccgtc ccagccgaac atatcaacca
     7561 gtttacccat cacataacct gcacttgcag agcctaacaa gtagccgaat aaaccggtta
     7621 aacctgttgc tgtaccggtg gcaacacgag gcactaaatc cgctgcttgt aaaccgatca
     7681 tcatcaccgg cccgtagatt aagaaaccaa tcgccactaa gcagatgttg tcgattaacg
     7741 ggttgccggc tgggtttttc cagtacacca caatcgcaat taacacacca gcaaggaata
     7801 acaacatcgg cggcgcacgg tgacctttga atactttgtc gcttaaataa ccgcttgcaa
     7861 gcataccgaa gataccggca tattcataca agaagtacgc ccagctctgt ttatccacag
     7921 agaaatgttt cacttctttt aagtaagtcg gtgcccagtc gataatgccg tagcgaatga
     7981 aatagacaaa cacgttggca atcgcaattg cccacaggaa tttgttgttt aaaatatatt
     8041 tgtagaaaat gtctttggaa gagagtgtgt gggcagactc cactttttcc accactttct
     8101 cgcctttgta ctcatcaatc ggcggtaagc cttgagattc cggcgtatca cgcatcaaat
     8161 agaacatcac aaacgccagt acaatcgcaa tcaacgccgg cagatagaac agggattgcc
     8221 acacgccaaa aatagataag cctaaaatcg ccaacggccc gattaaaccg ccgcccaagt
     8281 tgtgcgacac gttccaccag ctccaccaca cgccacgttc agaggttgag aaccagttgg
     8341 tcatcgtttt cgcccccggc ggatagccca ttccttggaa ccagccgttt aacgccgcca
     8401 aaatgatcat aattggaata gacgaaagca cgcccggtac taaaccgaac accagactca
     8461 caatcgctga accgagcaag ccgatagtga taaagtattt cgggttagaa cggtcggaaa
     8521 cgttacccat aataaattta ctgaagccgt aagcgagtga taatgccacg cccaccgtac
     8581 ctaagtctgc tttggtgaag ccatattcat caatcaaata cggcattgcc aacgagaagt
     8641 ttttacgaat taaataatat gccgcatagc cgataaagac gcctgcaaac acttgccaac
     8701 gtaatttgcg atattccgca tcaactctgc tggcttccac tttttgttct gctggtggag
     8761 aggcttttag aaaggaaaac attttactac tcctttaaga atgaaatcct atggctacta
     8821 taatctttca tttggagcag aaaaagtgga tttttgaaaa tttgtgagca agattaaaat
     8881 tattttgagc gaaaacgaaa agcggttgaa tttccttctt tttttgcaaa aaatttgaga
     8941 aatctaaccg cttgtttcac ttaaaaatca gctatttctg ctttttcaaa aattccacgc
     9001 ccgtatcagg gaagtcagta aagacgcctg ttgcacccgc tttattcagc agggcatcgt
     9061 acatttcatc gacattttgg aaaaagtccg gcagagcatc tttgcgcacg gtgtatgggt
     9121 gaagttccat tttgtacttc gccaactctt tcactaatgg cgtgtaaaca atgttgccga
     9181 ctttagattt ttctttatcc accaacatat accagcccgg gccgacacca tcggcatatt
     9241 ttgccacttc tgccatcgca ccgtctttga acatccagtc gtagtcgtaa ttaacccagt
     9301 tgccgttttt atctttctct tcggtttcgt gccaatcggt gtaggcaact aactgcacca
     9361 attttacgtc catacccagt ttcggtagta attcggtttt gatccgtttc agctcgttga
     9421 aatcgaaggt ttgcaggtaa attggtgagg ttttgctgtc gtagccatat tttttcaaca
     9481 ctttcagggt ttcgagtgca atgtctttac cctctttatg gtgcaaccaa ggggctttaa
     9541 tttcaggata gatcccaatt tttttgccgg ttgatttctc taatccttga ataaattcca
     9601 gctcttcttc caaagtgtga atggtgaaat gggactgcca catcgggaag cggttcgggt
     9661 aaacttgtgc ctgcttgccg tctttcacct caaaattctc ggtcatttca agggttttaa
     9721 tctcatcaag ggtgaaatcc accacataat aacgaccgtc tgctcgttta cgctcaggga
     9781 attttttcgc cacatcagtt aaaccgtcta aaaagtggtc gtgaatcaca atcaggcggt
     9841 tatctttggt catagcaaga tcttgctcta aatagtccgc ttgttgcccg aatgctagag
     9901 ctttagattc aagcgtatgc tcaggtaaat aaccgcttgc accacggtgg gcaatcacta
     9961 atttatcaga ttgttgtgca taggcaccca atgctgtcgc ggacaatgct aatgcagcaa
    10021 ccaatgtttt gaatttaaat ttcatagaat tacctcatat aatgtaaaaa taaaaggaag
    10081 aacaaaaatg tccttccttt tgataagtta tttattattt accatagtga tcttctaatt
    10141 ttgctttgtg cttgccttct tcaaccatca caatgaaggt taagagaatg gctaatacac
    10201 caccaccgat catcacgtag aaaccgccgt cccagccaaa tttatctgct gcccagccaa
    10261 ctactgcaga ggctgccact gtaccaccta agtaaccgaa taaaccggtg aaacctgctg
    10321 ctgtacctgc tgcttttttc ggtgcaagtt caagggcgtg taagccaatc aacattaccg
    10381 ggccgtagat taagaaaccg atagtggtca tccaaatgaa gtccattaat tgatatgggt
    10441 tttcatacca agcatggcct gcatattgtg caatttcaga ttccggtgtc gcagggttga
    10501 gccagaacgc aaccactgct gcggtggtaa gaatcataaa gatgaaaccg gttaaaccac
    10561 gtttgccttt gaacagtttg tcagagaccc aaccacagag taatgtacct ggaatcgcag
    10621 ctaattcata aatggtatat gcccatgctg tacctttaat gttgaagtgt tttacttcgc
    10681 ctaagtacac cggcgaccat ttcaatacgc catagcggat taagtaaacg aagacattcg
    10741 caatggcaat gtaccataac agtttgtttt tcagcacata agtcacgaaa atctctttgg
    10801 tgcttaaatc gtgttcatag gttttttcgt tatagtcgtc agggtagtcg ttacgccatt
    10861 tttcaactgg cggtaaaccg caagattgtg gagtatcttt catcacaagg tagattggaa
    10921 tagctgcgat cattgctgca attcccggga aataaagggc ttgttgccat acatcttttg
    10981 ccgttgcttc tacaccatac tcactgaaat agagcgcact tgctaatagc accatcgccc
    11041 ccggcaccat accgcctaag ttgtgagcgg tattccagat agaaacgata gtaccacgct
    11101 cagatttaga ccaccagtga accattgttc gtccacacgg tggccaaccc ataccttgaa
    11161 accagccgtt taagaagatc attacccaca ttactaaaat gcttgatgtt gcccaaggca
    11221 ttaagcccat aagggtcata catagacctg aaagtaacaa tccggtcggt aaaaatactt
    11281 tcgggttaga gcggtcggac attcctgcca tcacgaattt tgataaaccg taggccaggc
    11341 cggcagctgt accaatcaca ccgagatcgg tttttgtata cataccagct tcaatcaagc
    11401 ctttttgtgc taagtcgaag tttgcacgca caaaatagta agcggcatag ccgaagaaaa
    11461 ttcctgcaaa cacttgccaa cgcaagaatt tatatcttgc atcgactttg tccgccggta
    11521 attccgcaat gtgcggagcg ggtttaaatg gaccaaacat agtattctcc aatattactt
    11581 agtaaaacct ctgagtaatt cctttttagg aaattaggga agcaataata aatgaaaata
    11641 aaaaatgaca aagttatttt ttataaaaat gtgattcatt tcacaaaaaa tttaccttaa
    11701 accacaaaaa atgattgaaa aagaaaatca aacatca
//
LOCUS       DANLXK010000081        11403 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.082, whole genome shotgun sequence.
ACCESSION   DANLXK010000081 DANLXK010000000
VERSION     DANLXK010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11403
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            76..960
                     /gene="oxyR"
                     /locus_tag="PXD88_001782"
     CDS             76..960
                     /gene="oxyR"
                     /locus_tag="PXD88_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL6281337.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            963..1595
                     /gene="fabR"
                     /locus_tag="PXD88_001783"
     CDS             963..1595
                     /gene="fabR"
                     /locus_tag="PXD88_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL6281338.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(1622..1921)
                     /locus_tag="PXD88_001784"
     CDS             complement(1622..1921)
                     /locus_tag="PXD88_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL6281339.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(2010..5825)
                     /locus_tag="PXD88_001785"
     CDS             complement(2010..5825)
                     /locus_tag="PXD88_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL6281340.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(5788..6273)
                     /locus_tag="PXD88_001786"
     CDS             complement(5788..6273)
                     /locus_tag="PXD88_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281341.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(6282..8441)
                     /locus_tag="PXD88_001787"
     CDS             complement(6282..8441)
                     /locus_tag="PXD88_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6281342.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(8670..8870)
                     /locus_tag="PXD88_001788"
     CDS             complement(8670..8870)
                     /locus_tag="PXD88_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL6281343.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            9234..10388
                     /locus_tag="PXD88_001789"
     CDS             9234..10388
                     /locus_tag="PXD88_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL6281344.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(10436..>11403)
                     /locus_tag="PXD88_001790"
     CDS             complement(10436..>11403)
                     /locus_tag="PXD88_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL6281345.1"
                     /translation="TEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNISEHIKNILK
                     DKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRKWANSTLRT
                     YLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKLSSDYDKTD
                     KNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRKGDIVIAKN
                     YLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFSVLGNGGTI
                     THKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
BASE COUNT         3180 a         2579 c         2020 g         3624 t
ORIGIN      
        1 taggcattat actcacaaat atggcataat tcagcctatc agaacaatag gaaaaattta
       61 aattggagga atcaagtgaa tattcgagat ttagaatacc ttattgcact tgcagaacat
      121 aagcatttcc gtcgtgcagc agaatcttgt aatgttagcc aacctacttt aagcgggcaa
      181 attcgcaaat tagaaggcga actaggcact attctgcttg aaagaaccag tcgcaaagtc
      241 ctctttacgc aagcaggctt aacattagtt gaacaagcca aggtagtttt acgtgaagta
      301 aaaattctaa aagaaatggc aagcaaccaa ggtaaagaga tgtctggccc gcttcatgtt
      361 ggtgtaatcc caaccttggg gccttacatt tcgccaatta ttgtgcctgc attaaaagca
      421 gaatttgcag atttagagct gtatatttac gaattacaaa ccaaccaatt attagatcaa
      481 cttgaatccg gccagcttga ttgtggcatt atctcatttg taaaagagag tgaatctttt
      541 attgaagtgc ctatctttaa tgaagaaatg tacttggtag ttccagaaca acacgaatgg
      601 gcagcgctta aaaaattcga tatgaattta ttaaaaaacc gtgagttgct ctttttagac
      661 agtggccatt gtttacgcac taatacgcta gactattgtc tatccattgg agcaaaagaa
      721 aatccacact ttaaagctac caaccttgaa accttacgca atatggtagc agcaaatgtt
      781 ggcctagcat tgattcctaa attagccgct aaaccgatta aaggagtaca ttatattcca
      841 cttgaaaacc cgaaaccgtt tcgagctgtg ggaatggtgt atcgaccagg ttcaccatta
      901 cgcgcccgct atgagcgttt agctcaagcc attactaaaa ttatgcaatc cgaggcgtaa
      961 aaatggcaaa cggtatgagt gtgcgcgcaa ttcagaaaga aaaaacacgc agagcattag
     1021 tagaagccgc ctttaatcaa ttaagctcag aaaaaaattt ctctaatctc agtttgcgtg
     1081 aagttgcacg tgaagctgga gtcgcaccga cttcgtttta ccgccacttt aaagatatgg
     1141 acgaactagg cttagcaatg gtggacgaat ccgggctact attacgccaa ttaatgaggc
     1201 aagctcgaaa acgaattgca aatggcggaa gtgttgtcgt ggtttcagtg gaaacattct
     1261 tcgaactgat tgccgaccgc cctaacgttt tccagctatt actacgcgaa agctccggta
     1321 catcgcaagc gtttagaacc gcagcatcac gcgaaattca acattttgta gctgaattgg
     1381 cggactatat tatgagcaaa gataatcaca gtaaccgaga acttgcttat attcaatcgg
     1441 aaggtttagt cacgctagta tttactgccg gttctcatgc tttggatatg aacaatcaag
     1501 aacgggaaaa actaaagcaa cgtgtcatta tgcagctaag aatgctgatt cgtggctcca
     1561 cctattatgc caataaacaa gcttcatcaa cataaaaaaa cagacgccta agcgtctgtt
     1621 tttattcttt cgtaatatat gcagtcgata gctttaacca ttctagtgct aattgatgat
     1681 gttcagataa cgcattccat aacgcatctt ctgacaagat actataattg cctttagtat
     1741 ctaactgttc atcaaaacta tcatgtaatt cacgccattc cgggctagca taaaaccgac
     1801 ttaagggttc caaaagtgca gaagctcgtt tccattgctc aatccccttt tccaattctg
     1861 gtaatagctc tacccattgg ttataacaat cctgcatttt ctgaatatct gcttttttca
     1921 ttctttaccg cttacaccat aaattttagc ctcaatataa cataaaaatc cccttccgaa
     1981 gaaggggatt tcaactcaat taggctaaat taccactggt atccaacgcc tacaccgcca
     2041 ccaaagtcgc ctcggctatt cgcattacct tgtaatttca agataagctt accgttatca
     2101 cttgaacgtg aataacctac tgcaagcgcg ttttcacctt taaatgtacc acctgctgca
     2161 gccaccatag atttacctgg aatgtaaacc tgcggtaacg ctgctgctgc atttgaaccg
     2221 gcaataccag cacgggcttc acggttatta cgatggatct tgttatttaa gtgattaaca
     2281 gcacctttta actgaccaac attaacagca tcggtatctg cctcacctgc tttaacatta
     2341 gtaatacggt taccaccatt atttaagcca tctttcgtta agcttaccgc ttttcctgca
     2401 gagccattat taatggttac gccattattg ttcaccaatg tatcaccagt cttgctagta
     2461 aattcagggg tatctgaaac ggctacagtt acatcagaac ctttacgtgt cactttgata
     2521 ttattacctg cattcacgct cactgtacta cctgctttta ctttcgcagg ggctttatcc
     2581 ccttcaaccg cacctgtacc aactgcttta gaatctacgt tccagcttac gttgtttacg
     2641 gcatttgcta ctgttgttgc attcacaaag cgtgaaccgg taccgttagg atcttgaaca
     2701 ttgattttgc cgttatcagc aacggttaaa tctgtgatgt ttacgttcac tttcacctca
     2761 ccagccttat cactggtaat agttgtacca ttaccattta cgatattgat agaaccatct
     2821 tcatcagtac caatgttatt accattcact ttcgcatagt tgttcagctg tttaccgttg
     2881 ataacatctg tgcttactgg gctaatatcg ccatctgcta cattagtgat cttagttggt
     2941 ttaccgtctt tatcaccgac tttgatgtta tcaccatcat tagtgatttt cggaccattc
     3001 tcactgaact gtacgctatt gaagctcaca tcttttgctg tcgcaaaagt aaattgatta
     3061 ccatcacgtt taacagttaa gttatcacct gcttcaaaca caacttcttc gcccgttttc
     3121 actagcttag tcgcagcttg gtcaccggca gccttattac ctgcagattt aatattaaag
     3181 cctgcattat tcactgcatc tgcaacagtt tgagcaatca ataacgcatt tggctgagtt
     3241 ggtgctttca ccgtaccatc ttcgttgtta cctaactcac tggtatttgc agtgatgtta
     3301 ccttcattat ctactttaat agtagtaccg tcagttttcg cttcaacgtt ataagtagtt
     3361 gaaccatcag cattcgtgct aggtgtgata gttacacctc ggttaccgcc cactttcgta
     3421 gtagctgcat tagttgccgc ttgtaaatca cctaagttca ctacgttgtt tagcttgtcg
     3481 ccttcagcat ttttaatcgc ttctgcacgg tctttaccct ctggggttga gccatcttcg
     3541 ttacgaacac tacttgccac attgcctaat tgaacagggg cttcacctgt gaatttagcc
     3601 gtattgcttg gcgttgagct atcagtagga tcttggttta caaactcaat cgggctatct
     3661 actttaatcg tattcttacc gtctttgttt tcaaccgtga ccgttgtacc tttaccgtta
     3721 ataaaatcaa ccgtgtcatt atgtaccaca gtatcaaccg ctttgccgtt accttgtaaa
     3781 ttccagcctg catttaatac atcacctaat gttgctgcat tacttaactt atcagctaag
     3841 ttggttggat tattgtctgc tggttgaacc ttatcatctg cagtcacagg tatcagatta
     3901 gacgcaacat tgctaatcgc tttattacct gcattgatac catctttatt gatagtaatt
     3961 ggattatttg caggatctgc ttcatcagtt ggtacagtta cagtgttaga ggttacgctg
     4021 ctaaacttaa catcatcttt agtcgcataa atgactttac catcagcttc ttgcttcaca
     4081 gttaagtttt tacctgcaac catttcaact gctttacccg gattaatcag ttcatcacca
     4141 cctgaaagct tctctccacc ttctacagcc gacgttttca acgtaaagcc tgagttattg
     4201 atggcgttgg taatatcacc tgctgtcact aatttcttag catcatcagc ggttggttca
     4261 tcaattctac cgtcattatt tgcatcattt aatgccgtag tgttagcctt gatcgcaccg
     4321 gttgtaggat cttttacaat tgttacatcg tccgtattca cagaaagatc gaacacattc
     4381 gcgccatcag cattttttgt cgtgttaacc gtaactgatt tatcagtcga cttcacttct
     4441 tcacgagatg ccatagcgaa agtataaagc tgactaccat ttactgcatc tttactatct
     4501 gcatttacgt caccggcagc tacattagtt actttgactg cattaccgtc tttgtcacca
     4561 acattgatat taccaccatt gttagtaatc ttaggacctt catttccgaa ctgtacacta
     4621 tcaaaattca cattttttgc agttgaaaca gtaatgttat tcccatcacg ggtaatctca
     4681 atgtttttac catttaagaa ctgaaccgta tcacctgttt tcaccaggct cttctcgtca
     4741 ccgtttgctt taatgttaaa acctgcattg ttaattgcat ctgcaacggt tttagctgtt
     4801 actaatgcat ttggttctgt aggctcttcc actttaccat cagggttatt tgttaactcg
     4861 ctggtgtttg ccgtgatttc gcccttatcg tttaccttaa tggttgtacc atccgttttt
     4921 gcttcaacgg tataagtggt tgagccgtca tcgttagttt tagatgttac agtaacacct
     4981 ttatcacctt ccactttggt ggttgctgct ttcattgctg cttgtacatc acccacattc
     5041 acagcattat tcaacgtatc acctgttgcg ttgttaatat tatccgcaat cgctttacgc
     5101 tctgcatctg ttggtgctgc tttatctgca aatgtaccac ccacgccgct cttcagatta
     5161 gtgattgagc ctgttgtatc tggtttacca ttgctcatat caatgctgtt gaatgcaaca
     5221 ttatctttcg ttgtgtaagt gaatttaccg tcagcttggg taagtgtcat atttttaccc
     5281 gcatcaaagg taactgtttc acttggcttg attagctgtg ttttcttacc tttggtttca
     5341 ccaccatcaa caccatcacc tgctgttaca ttaaagcctg aattattgat tgcattagca
     5401 atatcacctg ccgtcactaa tttcttagca tcgtcacctg taggctcagt aactttacct
     5461 tcaggagaat tatttaatgt tgtggtattc gctttaactt cgcctgttgt cggatctttc
     5521 acgatagtaa cgttgtcagt attcactgtc atattaccgt cattatcacg accgatagat
     5581 ttatccgttg caacatctac cgtatattca gtattgcctt tatcatcttc ctttccggct
     5641 ttaacagtta cggctttaga accagctact acagatgagg ttttctctga attattaatt
     5701 gcatcagcca cattaccacg agttactgta ggagcacctg ctttcgctac atctaccgta
     5761 tagattgttt gaccattatc acctgtttca ggtgcaccaa cagttgctaa acctgaacct
     5821 ttcacttcgg ttttgtgacg ctgctgcttg ttttaactga cttacattca ccgcatcagt
     5881 atcagcttca cctgctttca cgcctgtaat tttggttgga ttaccatcat tacctgcaat
     5941 attaacatta ccatctttat tcgtgatttt cgggccatta tcaccaaatg ttacgctatc
     6001 aaatttcaca tctttcgctg tttcgtacgt gaatatagtg ccaacacgtt taacttttaa
     6061 gttatcgcct gctgcaaaaa tcactttttc gcccggatta atcaactctg ctgcttcttg
     6121 atcaccatca gctttattgc caccagattt tgcattccaa cctgcttttt gaatcgcttc
     6181 agaaactgtt tttgtagttg caactttatc ttcttctgca ggtgtagtta ctgcacctgt
     6241 tgtgttatca accgtgatag aaccggtatc cacatcaaag gttactttac gccatcagct
     6301 tcttgtgtaa catttgaaac tgtaccttta ccgtttacaa attgtacaga ttcatttggg
     6361 gtcactgtgc ctttggtttc acccgcatta tctttaatat tgaaaccttg gtttacatag
     6421 ttatttaagt tcgtaattgc atcgccaacg tttgttgcag tattaccata ctgagttcca
     6481 gctgcattcg ttacattata tttaggctga gtcacagagc catccggatt cacaacagaa
     6541 ccgccaccaa aattatttgc agttgaattt gcaaggttac tggttgcatt cattgccata
     6601 taaagttgtg aaccattaat cgcatcggtt gatgtagcag aaatctgacc cgctgccaca
     6661 ttttggattt gacgctcttt acctgcagag cctacagaaa caacatagtt agtatcttta
     6721 tttaccccgg caaagccatt ataagtaata ccccctaccg ttgcattttc agttggtgtt
     6781 gctgccctta cgactgattc gctacccaaa gcaacagaac tattcagagt agcttgagct
     6841 cccataccta atgctgtagc aaattgagct gttgcattag cacgtgtacc aacagccact
     6901 gctgattgtg ctgaggcaat tgaatttgca cctacggcta aagaggcatt tgcactcgca
     6961 tttgctgcaa caccaaaggc agaagctttt tcagccgttg cattagcatt agaacctacc
     7021 gctgtagcat cacctgctgt cgcatttgtt tggcgaccaa gtgcggttgt accattagcc
     7081 gttgcatttg ctgaatgacc aactgccgta gcttgaatac cttttgaaac cgtagcaaca
     7141 cctaaagata acgctccgtt accatttgca tttgagtttg tgcctaatgc tactgccgct
     7201 tgctctccac ctgttgccgt tgcattcggg ccgatcgcaa ttgagtttct gctcttcgcg
     7261 ccatcattag cttgattctc aggtacggtt gaattcacag agaaatattg aatttggctt
     7321 gcttgcgcag gaatattgac agaaagatca taaataaccg tgccatttgc atttctctct
     7381 gtacttttta cagttactgt accatcgttt gaaacaacag tagcttgggt atctttcgta
     7441 aagtcatcaa tggctttctt agttaaacca atttcatagt tagttgtatt cgcagcagtt
     7501 gcagctttac ctgttacagt aatgtaatca gggctagaag aatttgccgt ggtgttatac
     7561 gcatttactg tataaatagt ttgcccattt gcaccggttg catttgtaat attaacattg
     7621 ctacctgcaa caacttctgt ttttaccgct tttaatgctt cttcaatcgt atttttattt
     7681 gttccaccaa tattagtata ggtaacagaa ccatcaggct ttactgtagc attaccacct
     7741 aaaatatttt tagttgaatt agcaaggtta cctgttgcgt tcattgccat ataaagctgt
     7801 gaactattaa ttgcatcggt tgatgtagca gaaatctgac ccgctgccac attttggatt
     7861 tggcgtttga tcgtgtttga gccaacagaa acaacattcc ctgctgccgt agtattagcc
     7921 gcaaagccgg aataagtaat accatttacc gtcgcagaag gaactgccac agcgttggaa
     7981 acggttgaat tactccctaa agcaaccgaa ttatttagcg ctacattagc acctgagcct
     8041 aaggcaatag caaaaccggc acttgcttta gcactatcac caattgcaac cgtagattgg
     8101 ttggaagata ctgcacttac ccctaaagct gtcgcattaa cacctgaaac tgtcgcatta
     8161 taaccaatcg ctgtacctct agttgcagta gaagttgcat tagcattagc acttgaacct
     8221 aaagctaaag aataagtagc atttgcaaca gacttatccc ccattgcacc tgaacccatt
     8281 gcaaatgaac gagtgccact agcggcagat ctccatccca ttactgttga acggttacca
     8341 gtagctagag ctcctgcacc aaaagctgtt gcacggttac ctgttgcagc agtatccgta
     8401 cctaatgcaa tagcatttgc tgaagtcgct ctagccccca taccaatagc aatagaagga
     8461 actaatgccc aattctgacc agtgttattg agactctcta caccaatatt atagtaatgt
     8521 aagaagtatc ttctggatcc actaaatttg ttctatgcgt tgcattcgta tctgtaccaa
     8581 ttgcaatagt agatctgcca gttgagattg aatccgcacc aatagcaatt gcgttctccg
     8641 atgatgcagt tgcttgtgtt gaaatataat tacttgttgt tgaacctata agatacaaca
     8701 gccacagcat cattagctcc caacacggca ctagctccag ccaataaagc caatgttgcc
     8761 ttacttgcag aactaacaga tttcgtttta cctttcgctc gttgtaattc agatactgca
     8821 acccaacttt gtgttgcctg attccaaata actttaaaaa tttgattcat aatcgaccct
     8881 atataaaaat aaaaaagatt acgtagaacc tatgttcaac ataatcttca ccaatataaa
     8941 aaaccgccac ctatttaagt gaaataactt acttatagac tcagaaattt aagtgcgcgt
     9001 attttacgct atttgtaata taattcatct tctggagtgt aaatttattg taaataatac
     9061 gaggaatcta accgcttgtt ataacgcaaa acaccttgac ttaaatcaag ccactacctc
     9121 attttgaggg gagatttata cgcagtgaaa ttttaaaata agctaaggtt tacggataat
     9181 cgttcaacac tattgaatta tcactgtagt tatcgttaaa aaggtatgct tttatgaacc
     9241 aattcttccc tctaatcttt agcttaactc tattttccgg cgtaactttg gcactagaaa
     9301 aagcacctcg aactatgccg acagaaggaa taaataagcc cctacttgga caaattctat
     9361 tctttgacaa tatgctgtca cacaacggtt cacaaaactg ctccagctgc cataatccgg
     9421 attatgcctt tattgataac cgcactactc cggcaaaagg ggtggtttca caaggagata
     9481 ctccaaccaa attcggcaaa cgcaactccc cgaccatgct ttatgcgaaa tactcgcctg
     9541 agttccactt tgatgagcaa agtcaagaat atatcggcgg gcagttctgg gacggacgag
     9601 ccaaaaatct cgccgagcaa gccggtatgc cgcctatcga cccaaatgaa atgggaatgc
     9661 ctaacaaatt agaagtagcc aaaagattat ataatgtgcc gatgtatcag cgatttttag
     9721 ggcaatttta cggtgaaaag gtatgggaaa gttatgaaag cgtttatgcg gcaatggaag
     9781 atgcgattgc gacattccaa caagaaaaca aacttctcgc tccatttgat tcaaaatatg
     9841 atctattttt aaaaggcgag gtacaattaa ctgcattgga agaaaaaggc agagctttat
     9901 ttttcaataa agctcaaact aattgtagta gttgccacca attacagagt gctgcaaacc
     9961 accaagaaga aacctttagc aactatcact attacaatgt aggcgtaccc ggtaacccag
    10021 acttgatagc ggttaacggc ttcgcaccag acttcgtcga tttaggctta tttgaaaacc
    10081 caaatgttaa aggtgatgaa acacaaaaag gcaaattcaa aaccccaaca ttgcgtaatg
    10141 ttgccgtgac tgcactttat atgcacaacg gtgtgtttaa agaattaaag actgttttgc
    10201 tgtttttaga cagctacaat aacccggagc gaaaaatcaa ccctgaaacc ggcacggcgt
    10261 ggcaacaagc agaatttgaa cccactatcg cccaccaaaa actcaaagcc aaacccttaa
    10321 gcgatgaaga aattgatgcc ctcgaagcat ttttaaaaac cttgacggat gagcggtata
    10381 gaaaataagg ctacaagcgg taaaattttg gggaaatttt accgcttgcg tttaactacc
    10441 gtgttagctc actttctaac ttttccaatg cctgcaaatc ttcccaatct gcctctttct
    10501 gttttaaaca tttacgctga atatcaaatt tttcgtattg ctctctgaca aagctttcca
    10561 tttgtttatg cgtgattgtt ccaccatttc ctaatacaga aaagccgtta aactcaatca
    10621 acatatctac atttcttcgc cagaaaccta acgtaagatc ttggttgttc ttcacacgta
    10681 attcggcact ttcaagaaag atcattacca agcgatttaa agaatccagc tcattattat
    10741 ctaaatagtt tttcgcaatc acaatatcgc ctttacgcac gacttttcct ttccagctag
    10801 ttaatcccat attcatctta gtcgcatcag cacgttgaca aatcaactca gcggcagtgt
    10861 gtttggttat tgcataaatg agcttatttt gcgtttctgc aaaaaacatt tgcgtatttt
    10921 tatctgtttt gtcgtaatcg ctagagagtt tgaaaagctc tcgtactttt tgatagaaac
    10981 gcaattcact tgcccgaatc tcacgaatct gttcaagtaa ttcatcgaaa taatctaaac
    11041 gaccctgcgg atttttcaaa cgctcgctat caattaaaaa acctttttcg agataagtgc
    11101 gtaatgtgct gtttgcccat tttctaaact gtactgctct tgggctacga actcgaaacc
    11161 ctatcgccag aatcatttca agtgaataat gttttacttg ataattcttg ccatcttgag
    11221 cagttatcaa gtaatccttg ataactgaat tctcatctaa ctctttgtct tttaagatat
    11281 ttttaatgtg ttcggatata ttttgcacag aggtgtcaaa aagttctgca agttgatttt
    11341 gtgtcagcca agcttcattt tcaaccacta acaaggctac attgcttttg ccgtcttccg
    11401 tat
//
LOCUS       DANLXK010000082        11300 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.083, whole genome shotgun sequence.
ACCESSION   DANLXK010000082 DANLXK010000000
VERSION     DANLXK010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11300
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            300..1028
                     /gene="ttrB"
                     /locus_tag="PXD88_001791"
     CDS             300..1028
                     /gene="ttrB"
                     /locus_tag="PXD88_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL6281346.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVMVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            1030..2061
                     /gene="nrfD"
                     /locus_tag="PXD88_001792"
     CDS             1030..2061
                     /gene="nrfD"
                     /locus_tag="PXD88_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL6281347.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2051..5146
                     /gene="ttrA"
                     /locus_tag="PXD88_001793"
     CDS             2051..5146
                     /gene="ttrA"
                     /locus_tag="PXD88_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL6281348.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5287..6132
                     /locus_tag="PXD88_001794"
     CDS             5287..6132
                     /locus_tag="PXD88_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6281349.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6245..7642)
                     /locus_tag="PXD88_001795"
     CDS             complement(6245..7642)
                     /locus_tag="PXD88_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL6281350.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7732..8355)
                     /gene="gmk"
                     /locus_tag="PXD88_001796"
     CDS             complement(7732..8355)
                     /gene="gmk"
                     /locus_tag="PXD88_001796"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL6281351.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8468..8941)
                     /gene="gpt"
                     /locus_tag="PXD88_001797"
     CDS             complement(8468..8941)
                     /gene="gpt"
                     /locus_tag="PXD88_001797"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL6281352.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9087..10496)
                     /locus_tag="PXD88_001798"
     CDS             complement(9087..10496)
                     /locus_tag="PXD88_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6281353.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(10692..>11300)
                     /locus_tag="PXD88_001799"
     CDS             complement(10692..>11300)
                     /locus_tag="PXD88_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6281354.1"
                     /translation="AEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIEGKVTVRTQSYL
                     YNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTATYSGKAFNHDG
                     AKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISSTVHGNNPLNLSG
                     KYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
BASE COUNT         3059 a         2631 c         2590 g         3020 t
ORIGIN      
        1 gcaggatgga aaattagaaa aggaaagaaa cataatatat taattgcccc aaattctagg
       61 agattagcga tacctagtac cccgagtgat attaatgcgt ataaaaactt tagatctaaa
      121 ctaaaccatc ttattgcttt ttaattagta tcaatgccct attatctact tgtatagggc
      181 atttcccttc atccttgacc caaatcaact ttccccttga tatgtggaaa accacaatac
      241 cttgccgttc cctctccgcc ttagaatacc tttgttattt ttaaatttgt gggggaaata
      301 tggatttaag caaacgttcc tttttgaaag agctttccgc cttgacggtg ggggcgagtt
      361 ttgtgccgtt gcaatcggcc caggcgttta tgccggcttg gcgtgagggc gatgagaaca
      421 aacgctatgc gatgctgatt gatttgcgta aatgtatcgg ctgtcaagcg tgtaccgtga
      481 gctgttcggt ggagaacgcc acgccgttgc acagtttccg caccacggtg cgtcaatatg
      541 aaatcaccaa cggcacgcag gtggtgaaca atgtggtgtt gcctcgtttg tgtaaccatt
      601 gcgatcaacc gccgtgtgtg ccggtctgcc cggtgcaggc aacctttcaa cgtaaagacg
      661 gtgtgatggt gattaacaat gagcagtgca tcggctgtgg ttactgcgtg caagcctgcc
      721 cgtatgatgc ccgttttatc aatgaagaga ccaaaaccgc cgataaatgc accttctgca
      781 ctcaccgttt ggaggtaggt ctgctgccgg cgtgcgtgga aagttgcgtg ggcggggcaa
      841 gggtgattgg cgatttgaac gacccgaaaa gtcaaatttc ccaactttat caagcccaca
      901 aagatgattt gaaagtcctg aaaccggagg ccggcaccgt gccacacgtt ttctatgtgg
      961 ggctagacga tgatgccttt gtgagcaaaa ttgacgggca accaatgctc tggacggggg
     1021 aggcgtaaaa tgattcgtga agtattagtg gaaccgcaac atatcgtctg gttgccgtgg
     1081 attgtgcatt atttcttctt cgtaggcgtg gcggcaacgg cagtgtttac cgccgtgctg
     1141 tttgcaaaaa aatcactgaa accgaccgct tgcgagctgg cggcggtgac ggtagccttg
     1201 attggctcga ttgtcgcccc tgtggcattg actgccgacc tgcaccaacc gagccgtatt
     1261 ctgcatttct acaccgattt tgcgtggcga tctccaatgg cgtggggagc gattatcctg
     1321 cccctgttca gcgtggcggt agcgggttat tttgtgctgg cattggctca ccatacccgg
     1381 ccgaacctgc cgaaatggtt agcgtggcta cagttgccga tactgcaaaa tcaaggcttg
     1441 ctttgggcat tccgcctgtt tgccacactc accgctatcg gcattatcgg ctacaccgtg
     1501 cttgaaacct accaaaccgg cacaagaacc ttatggcaca gtgcgtggct gctgccgatt
     1561 atgctctttt ctgcgtgggc ggtggcattg gggcttaccc aagcggtctg caaaatgctg
     1621 ttccacaccc aaaccaacac ggggctatgg acaaaactct gcctgatttt aaccgcactt
     1681 tcgcttgtcg gactagcatt cagtagtcca caagccacac aagattttgc ccagctcttc
     1741 aatggctcaa tcaccgctta ccttgtcggc attttctggc taattgccct catttgcaat
     1801 ttttctgcca aaaaccaccg cttgcaatgg ctcggcgtgc ttgccctcat cgctttcggc
     1861 tggctactcc gctgggtact ggtgatccaa gtccaaacca ttgccaaaac caatgccttg
     1921 caaaatccat atcatttcga ttggacagcc gtcgatggtg gtttggggat tgtctcgatt
     1981 tttgggctaa cggtgctagt aagtatcgtg gtatggcaac tgattttaat aatttgtggg
     2041 ggaagaaaag gtgaacaata aacgcagaaa tctgttgaaa ggcgggctgg cacttggtgg
     2101 ggcggcggcg tttggggccg ggtattcgcc gaaggtgtcg gagattgcca aaggggtgat
     2161 gcacggcaca tcgggcgaga aaacccgtga tgcaattcac ggtaattcgc tcacgccgga
     2221 gtatcaggta aaagacggca aactgctcag caatcctgag caaattgtgt gcaatacaca
     2281 gtgtatgggc tgttggacgc agtgtggcat tcgggcgagg gtggatttga acaccaacca
     2341 agtgattcgc atttcgggca atccgtatca cccgctttcc tccgacaaaa ccctgccgtt
     2401 cggtatgccg attgccaagg cggaactgtt gctggcgggc gaaagtggca ttgaaaatcg
     2461 ctccaccgcc tgtgctagag gggcggcgtt cttggagggg gtgaacagcc cgtatcggat
     2521 tacccaaccg ttgaaacggg tcggaaaacg gggcgaaggc aagtggcaga ccatcagctt
     2581 tgagcagttg gtggaggaaa tcatcaatgg tggcaaccta tttggtgaag gcgaagtgga
     2641 gggcttgaag acgatccgca atctggtcga tccgattaac ccgaaacagc ctgatttggg
     2701 aatgaaagca aaccagcttt tagttacttt tgccggcccc gaaggtcgtc agccgatttt
     2761 gcaacgcttt gcccaaaaga gcttcggcac gatcaacttt tccaaccacg gggcttattg
     2821 tggcgctgcg taccgtgccg gttcgggtgc ctttatgaaa gattttgaca accaacaaca
     2881 cgccaagccg gactgggatc acgctgaatt tattctgttt atcggcacgt ctccggcaca
     2941 gtcgggcaat ccgtttaagc gtcaggctcg ccagcttgcc aaacgccgcc ctgatgacaa
     3001 tttcagctat gtggtggttt cccctcgttt ggagatgacc tcctccctcg ccacccaaaa
     3061 caaccattgg gtgccgatta agcccgaggg cgatttggcg ttggtaatgg gaatgttgcg
     3121 ttggattatc gaaaacgagc gtttcaatgc tgactacctc tcccgcccaa gtctggcagc
     3181 gatggaaaat gccggccacg tcagctatgc caatgcgtca catctgatta tttgcgaacc
     3241 gaaccacccg aaattcgggc aggcgttgcg gattagcgat ctgcaagatg tgcaactcga
     3301 ccccgaagag aaagtggaag aaaacctgat tgtggtaaaa gatcaggcaa gcggcgaact
     3361 catttcagca aaagattgct tacaagcggt catttttgtc gaacaaattg caaaactgct
     3421 tgatggctcg gaagtgttgg tgaaatcctc aatgcagttg ctgaaagagg cgacacaaga
     3481 gaaaaccctt gccgaatata gcgacatttg tggcgtgccg gtgcaaacca ttgaaaactt
     3541 agcgaaaaaa ttcacttcgc acggtcataa agccaatgcc atcactcacg gcggcacgat
     3601 gcacagcacc ggtttttata ccagttgggc gattttgttg ctgaatgcaa tggtcggtaa
     3661 cctcaacaaa aaaggcggaa tggcagtagc cgcaggcaaa ttcaaagatt tcggggacgg
     3721 gcctcgctac aatttagcga acttcccgaa tgaagtgaag ccaaaaggca cgaaccttgc
     3781 ccgcagtaaa aaggcgtacc aaaattcaag cgaatttaag cagaaagtga cgaagggcga
     3841 aaatccgtat ccggcacaag gggcgtggta tccgttcacc ggcgggcaaa ctaccgagat
     3901 gtttacctca atggtgcagg gctatccata ctttgcgaaa gcgtggatca accatatggc
     3961 gaaccccgtt tacggcttaa ccgctatgaa cccgattgcg ttggagaaat taaaagatcc
     4021 gaaaattcta ccgctctttg tctctattga tgcttttatg aacgaaacca ctgcactgac
     4081 ggactacatc gtgccggaca cccacaactt tgagagctgg ggcttttcaa cggcgtgggg
     4141 cggtgtgcct caacgcacca gcaccgcacg ccacccgatt gtgccgtcca aaaacgccaa
     4201 aactgccgaa ggcgacacca tctgtatgga gaatttcgtg attgcggtgg cgaaaaaaat
     4261 gggcttgccg ggctttggcg aaaatgcgat tgccgattta gaaggcaacc gctatccgct
     4321 ccaccgtacc gaagattact tcctacgggc ggcagcgaac attgcctttg ccggtgagaa
     4381 acctgcaccg gacgccagcg agcaagatct gctgctcacc ggcgtgcaac ggattatgcc
     4441 gaaaattgaa caaacgctaa aagccgaaga gcgattaaaa gtggcgaatg tgtattgcaa
     4501 aggcggacgt tttgccccac acgaaagtgc gtggaaagag gagaatatgg agttccagtg
     4561 gaaaaactgc ctgcaaattt ggaacgaaaa cgtgtataaa gcccagcacc acagcaacgg
     4621 tgaacactat tggggctgcc ctcgttatat gtcgccacgt tttgcggacg gctccacgct
     4681 ggagcagcac tatccgcagt cggaatgggg ctttaaactg atttcgttta aatcgaacat
     4741 tatgagcagt attaccgccc cactgttgcg tctgctctcg atcaagcctg agggcttagt
     4801 ggcgatgaac cgtttagatg cggaagaaaa aggcattaaa cacggcgatg tggtgaaact
     4861 cagcacccca accgccggct tgacggtgca gattgtggtg ttggacggta tcgcccgagg
     4921 cacaatcggc atcgaacacg gctacggtca taaacagatt ggggcaagtt cctacaccat
     4981 tgacggcgtg gaaattccag ccaacccgat gatcgccaaa gggattaacc tcaacgacct
     5041 cggcattatc gaccacacca aagcggtcaa atccccgtgg gtagattggg tctgtggctc
     5101 agcggtgaga aatggcattc cggcgaaggt agagaaatta gcctagccga acaagcggtt
     5161 ggttttgcag aaaaatgtgc aaaatcgacc gcttttattg atgtaaggga cactgttcct
     5221 tatgcaaacc agcattgcag agcgtaaaaa atcatactct gcattttaat ttattttgga
     5281 gaacctatga cttttgtcaa aaaaacagca ctgagcctga ttgcaacggc acttttcgct
     5341 acatcaagtt ttgccgctga gcagagccaa taccaacata ttcgtaatgc aacggcgaaa
     5401 attgaatatg ccggcaagac gtttttggtt gatccgtatt tagcggagaa agatcgctac
     5461 ttaccgccga atgcgaaaaa acgtaatccg accttggata tgactgtgag cattgatgaa
     5521 gtgttaaatg gcgtggatgc ggtgatcgta actcacactc accacgctca ctgggacgat
     5581 gtagcacaac aacgtgtgcc gaaaaatctg ccgatttttg tgcagaatgc cggtgatgcc
     5641 cgtttaatcc gttcacaagg ctttaccgat gtgcgtgtgg tcggcaaaga taccccgttt
     5701 gaaggcgtaa ccttaacccg aactcgtggc cagcacggca ccgatgcgat gtatgcgaac
     5761 ccgaaaattg ccgaaatggt cggcgatgcg atggacgtag tgatgaaagc ggaaggcaaa
     5821 ccgaccgtct atttggtggg agataccatt tggaaccacg aaatcgaaca ttcgttcaac
     5881 acttacaaac cagactttgt ggtgctgaat gccggctgtg ccaaactacc aaactttgaa
     5941 ggcagcccga ttatgtgtac cgaagatgtt tccaaagcac acaaaatcgc tccacaagcg
     6001 aaaatcttaa ctgtgcatat ggacgccctg ccacaaacct caatcagcag tgatcagatg
     6061 cgtgattatg tacaaaaaga gggattaaat cgtgtaactg tgccgaaaaa cggtgatgtg
     6121 attaagttct agtagctaaa ctaacattac caaaatggtt taagtagcaa taaatagcga
     6181 agcgggttaa gccatcaagc cttaacccac ttttaccaac catagtatat agttttagat
     6241 ataattatct tctgtattta cctgccattg cttggtaaac cgcattctcg ttggtcaaaa
     6301 tcgcatattt tgcatttaaa atcgccaact gagaattaag ctcggtattc agtgcggtaa
     6361 tccactcacg gaactccgac accccttgtt cataacggtt tttatagtat gaactgatac
     6421 gtttattttt cgcattggta tcttgaagga tttttaacga gcttctcgac tgcgtataac
     6481 tgtaataata acggtcaatt tcatttaagg ctgaggtaat tttttgctca tagtttaaac
     6541 gggcagtcac ataatccgtt tcagaaattt ttacgttatt tttaacccga ttccaatcta
     6601 agaacggtaa atccaattta attaagccgt tacccacagg gttatctgcc acattgccga
     6661 tattggttgc actaccggta atagaaccac cgatggttaa ggttgggaac cagcttttct
     6721 cggttgcggt taaggtttta aatgcacttt gtaagcgttg taacgagcct actacatcag
     6781 ggcgattagc aatggctgac actggcacat ttaaatctac cccttgcaat ttcacgctca
     6841 taatattcgg gtaacgaatg ttaagcggag tatttggctg aacatttaac aaattgcgta
     6901 atgtttgctc ggcaattttt tggttggttt tcagatcaat tacactattt ctggcgttta
     6961 agaccgcttg ttgagcctga tcaaccgcta aactatcaat cgcaccggca ttcattttgt
     7021 tagttaaaat acggctgatt tgctcataat ggcgaatgct ctcttcggta atacgaatcg
     7081 catcacgata gtaagctaac tggtagtaag tagtcacaac cgcattaata atagataaac
     7141 gggtagcttt taagtcttca atggtggctt tatgcgtcca ttctgccgca ctggcggtat
     7201 cggctaaacg tcgccataaa tccacagtat aacttaaatt aaatgcagct tgagctgcgg
     7261 ttgttgaaac accggtcgaa acattatttg aagaagccga acctaaacct ttagccgcag
     7321 aaacagaacc tgaaccacta aaggttggca ctaaatttgc ccctactaaa ttagcgttat
     7381 acaaggcttt attgactgca attccgcttt tggctaaatc aaggttattt ttgatggcta
     7441 aatcaaccac acggtttaat tccgcatccg tatagccttg ccaccattgc tcgttaattt
     7501 gatattgttt ggtaatttca tcatagcttt gataggtttg ctgtgcttgt tgcaaagtcc
     7561 cgtcattgct catattccct gtggtacaag ccgttacggt tagagccaac gccacagaaa
     7621 atgctaattt tgaaagtttc attacatttc cttttgaaaa taaagagggg aaaatgggcg
     7681 tattctaccc aaaaacagat tgcctttcca gttaaatgaa caactgttca tttaattatt
     7741 taacaaatca gtaatcaaat gctgatgacg aatttgttgc gaacctaagc tcaaacgctc
     7801 ggcaattaaa atcgctttta gctctgccaa tgcctgttgg aaatcatcat taataatcac
     7861 ataatcgaac tcattgtaat ggttcatttc cgacaccgcc tctgccatac gtttggcaat
     7921 ggtttcagcg gaatcttgcc cacgcccgat taaacgtttt tccaattctg tttttgacgg
     7981 tggcaaaata aaaacggttt tcacattcgg cactttttcc cgaatttgtc tagccccttg
     8041 ccagtcaata tccaaaaaga catcaatgcc ctgctctagg ctacgttcaa tcatcggcaa
     8101 tgatgtgccg taataattgc caaacacctc cgcccattct aaaaaatacc cttgctcaat
     8161 cagctgctta aactcatcgt gcgaagtgaa ataataatgc acgccgtcct gttctgccgg
     8221 acgaggctga cgggtagtgt gtgaaatcga aagctgtact tccgaacggg gtaaatccgc
     8281 caacaaggcg ttaattaagg aagattttcc tgctccactt ggggcagaaa taatataaag
     8341 attgcctaaa ctcattattt gtatatacct atttgatttt gggaataggg cgaatgatga
     8401 ttcgccccta catttcatag gaataaataa aaaataatgg acaactttca ttgtccatta
     8461 cacaaaatta tctacgtgcc aaaggctgaa cgaaggtaat gcctaaatcc caaggctgct
     8521 caatccacgt ttcttgtgga atatcaatca cataatcatc aaccaacggt gcaccgtgcg
     8581 gtttcgcaaa cacggttaca aaacgagctt tcgggtacat tctgcgaatt tcttttgccg
     8641 tgttgccggt atccactaaa tcatctacca caataaagcc ttcgccatcg gtatcggctg
     8701 cgtgtaacac atttaactca ccttggctat cgtgatcgta gctggcaatg cacactgttt
     8761 ctacgtggcg aatacccaac tcacgtgcta aaacggctgc cggaaacaag ccgccacggc
     8821 tcaccgcaat aatccctttc cactgtgtgg caggtaataa attttctgcc aacttgcgag
     8881 cgtgcatatg gaacatatcc cacgtcacga catatttttc atttgtgtat ttttcactca
     8941 tagaaacaac ctaatataaa attgggggct accccgatat aaaaaattgc actaggataa
     9001 cccgaaaatg cttttttcgc catcatttca tttatttttt tgtgccggca gctacgcaat
     9061 cgtatgctta gcacaaaaaa ccaacactaa aatagctttt ctaaagtgaa aaagacttcc
     9121 ttgttttggc gagagtaaaa atcagcaata ttgctgtcaa ttttttgata acggaaattc
     9181 agcttcggca caatgccctg ccaatgccaa gtgcggttcc aaaccgctaa attggcttga
     9241 tattccgtgt ctaaccgctt atagccaaac aaatagtgct tgtcggcaaa atatcgcttg
     9301 ccaaagccga tacttgcctg cgttgcccag cgttcgcctt gaaaaaccgc ccccactcga
     9361 gccagccact tattcgagct ttgtgctttt tcccgtgcaa tttcacgcac gccgtctaaa
     9421 tttgcaaaaa accgcccatt tttgaccgct tgccactgca caccgccact gagttggtgc
     9481 tgatagctgt tataacggct tgcggttagc tcctcaaaat accgtttttg caaatgggta
     9541 aaactccccg acaccaacca ttgcgaatta aggtaacgca aaccgttgag tgttgcccca
     9601 aattgaacat tataacggct actccccagc caattttgct caataaaagg cgaaaaagtc
     9661 agccgataag cgacggtgcg gtagctataa ttcggcgaaa cggatacgga ttgctcacgg
     9721 taatctcggt tatcccaata gtaaatcccg ctataattga gcgttaaacc gacaaaatga
     9781 ttgcctttca cgttgtgcaa tttactcaac cctaagccat aacgcacgcc ttttgctgat
     9841 tgtggcaaac tgtctgcatt tttgcggaaa atccgcccat ttacattcac aatcggcgaa
     9901 gatgaggcat tattcacgtt atctgtttgg gtatattgca gataaaaatc gggctgccac
     9961 gcctcatttt cagcaatttg gacttgagta ttgcgggcaa ttttagcaag ttccggcggt
    10021 aaatgggctt gaatagcctt aaattcctgc tctgccgcac gaaattgctg atcttctgcc
    10081 aaaatcaacg ccaaatcaaa acgagggtaa accaaactcg ggggcttagc taacagttgg
    10141 cgatagtgaa aaactgcggt ttgatgatct tttttcgcat aggcaagtgc ggcttgcgca
    10201 tagtgccaca acaacgggtc aaaattttca gtttgcggat aacggcttaa aagcggttca
    10261 agcgttgccc aatcttggct gagaatcgct tggttaattt gctgttcaac attctgattg
    10321 actgaatacg caggctgata agcggtcggt ttttgtgaat tttttacaac attttgctca
    10381 aatttaaccg cttgcggctg acgctcaaag gaaatcgggt cagtgttgtg ttcaatcacc
    10441 ttttctgccc atacaacggg gctgaacagc gaaaataaaa ggggatattt tttcataaag
    10501 ataaagaaaa ttggtagggg cggacctata tgttcgcctc tacgggattt atcactctct
    10561 ccccttgtgg gagagggtta ttagaagctg taaattgaaa tctaaactat tgtgtcttat
    10621 ggtatctaca agcaatatca agacaaatgc cgtttaattt ttcgttaaac ggcattgaac
    10681 gttagaaaag gttatttttg gatatcgcca cgagtgccgg caagtccaaa attactcact
    10741 tccccagtaa gatttgcttt tgtctgaatt tcaccggcaa tttcctctgc atttttaccg
    10801 aaaaattcga ctgtatattt tccagaaagg tttaaaggat tattgccatg tactgttgaa
    10861 gaaatctgag tattattaat cgtcccctct tctaatacga ttaagtttcc aaattctccc
    10921 tcaactctac ctgaaccggt acgcttagag aaattaacat tataggttag atcaccacca
    10981 ttaaaacctt tagctccatc gtggttaaat gcttttcctg aatatgttgc agtaccctct
    11041 gttggtaatt tctctgtttt caatccttta actgtaactg ttccatcaac tttatcaata
    11101 taattaccgt tttcccagcc atttctttga actgcttgtg ctgttactac agaatatggc
    11161 tgattatata aataactctg tgttctgact gtgactttac cctcaatagt ttctttacta
    11221 ttaccaagtt ttaagccgta atttgtatca tcaatacctt ttgctttaat aatagctata
    11281 ggatctactt ctttttctgc
//
LOCUS       DANLXK010000083        11076 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.084, whole genome shotgun sequence.
ACCESSION   DANLXK010000083 DANLXK010000000
VERSION     DANLXK010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11076
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(78..1367)
                     /locus_tag="PXD88_001800"
     CDS             complement(78..1367)
                     /locus_tag="PXD88_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL6281355.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDSA"
     gene            complement(1491..2288)
                     /gene="ccsA"
                     /locus_tag="PXD88_001801"
     CDS             complement(1491..2288)
                     /gene="ccsA"
                     /locus_tag="PXD88_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL6281356.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2504..3028
                     /gene="yceD"
                     /locus_tag="PXD88_001802"
     CDS             2504..3028
                     /gene="yceD"
                     /locus_tag="PXD88_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL6281357.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            3045..3215
                     /gene="rpmF"
                     /locus_tag="PXD88_001803"
     CDS             3045..3215
                     /gene="rpmF"
                     /locus_tag="PXD88_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL6281358.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3234..4256
                     /gene="plsX"
                     /locus_tag="PXD88_001804"
     CDS             3234..4256
                     /gene="plsX"
                     /locus_tag="PXD88_001804"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL6281359.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4353..5636)
                     /gene="hisD"
                     /locus_tag="PXD88_001805"
     CDS             complement(4353..5636)
                     /gene="hisD"
                     /locus_tag="PXD88_001805"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL6281360.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5648..6547)
                     /gene="hisG"
                     /locus_tag="PXD88_001806"
     CDS             complement(5648..6547)
                     /gene="hisG"
                     /locus_tag="PXD88_001806"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL6281361.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6580..6707)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6906..7763
                     /locus_tag="PXD88_001807"
     CDS             6906..7763
                     /locus_tag="PXD88_001807"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL6281362.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7904..9385)
                     /gene="ilvC"
                     /locus_tag="PXD88_001808"
     CDS             complement(7904..9385)
                     /gene="ilvC"
                     /locus_tag="PXD88_001808"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL6281363.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9607..10842
                     /locus_tag="PXD88_001809"
     CDS             9607..10842
                     /locus_tag="PXD88_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL6281364.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
BASE COUNT         3310 a         2469 c         2079 g         3218 t
ORIGIN      
        1 atttatatta aaattaacaa aaaaataaca cattatttgt acaaataatg tgttatttac
       61 tttctttttt cttaaaatta ggctgaatct tgctcttttt caattttcgg tgaaagatgt
      121 tcaactttcg cttgtttaac catattttca ctcacttcaa gaatcatcac tttcaagttg
      181 tagagttcaa attccattcc ttcatcagga attttttcta aatgctctaa aatcaagccg
      241 ttaaaggttc tggcttcctc aagcggtaaa tcccaatcaa atagtttgtt cagatcacgc
      301 aggttggctg agccttcaat aatcaccgta ccatctgatt gttgctgaac ttcttgctca
      361 agggtcggtg ctgatgaagt cgtaaattca cccacaattt cttctaaaat atcttcaaga
      421 gtgactagcc ctttaatatc accatactca tcaaccacta aaccaatacg ctctttattc
      481 gctttaaagt tcattaattg tgtagtgagt ggtgtgcctt caggaataaa atagacttca
      541 tctgttgcac gcagtagcat ttctttggta aattcgtttt tctccaacat taaacgaaag
      601 gcttcacgca cccgcaaaat cccaacaata ttgttgtcca tatccccttt gtagataatc
      661 acccgagcgt gaggggcgtg attaagctga cgcataatcg ctttccagtc atcatcaata
      721 tcaatgccgc tgatgtcgtt gcgaggcacc ataatgtcat caaccgtcac tttttccata
      781 tctaaaatag agaccaacat ttcacggtgt tcggcaggaa taaatttacc ggcatcaagc
      841 actacactac gcagctcttc ggagcttaag ccttgtttat ctttttgttg aatccgcaat
      901 aatttcatca gcccggcaat aatcaaattc attaaaaata caatcgggct gagtaatttt
      961 ttaagcggtg ttagcacaaa gctggcgaaa aaaccgactt tttcagggta aattgccgct
     1021 actgttttag gtaggatttc cgaaaaaacc aacattacaa aagttagcaa accggttgca
     1081 attgccacac cggcttcacc ggataactgc ataccgatca tcgttgcaat cgcagaggcg
     1141 gcaatgttga ctaagttatt acaaattaag ataaggctaa gtagcacatc ggtgcgtgcc
     1201 aagagttttt ccgccagttt cgccccttta tgcccttgct cggcaaggtg acgcattttg
     1261 tagcggttta aagacatcaa gccggtttcc gagcctgaaa aaaatgcaga gagtactaaa
     1321 agaatagcta aggtaataaa taaactactc aggggaatac tgtccaaaat tcaattccta
     1381 tgtaaattaa tcataaaagg tagcgtaaca ctaaaagcgt tgtcactacc tcactttgtc
     1441 ggttcagccg acttgcaaaa aattttgctt ttttgaccgc ttgtagatca ttaattgacg
     1501 atcaaacgac taccgaaata gccgatggtg agcaacatca tacccgaaat cgaataaata
     1561 agcacccgtt ttccacgcca atgtaatttc cactgtccaa gtaactgaat gctataaaca
     1621 agccaagcta aaaaggagaa aattgcttta tgaatatgct ccggctcgaa aaagttatgc
     1681 aaataaacca caccggaaaa taaagtgagc gtcagcatag cttgtgcagc taaggttaaa
     1741 gtaaagaaat ggcgttcaac cgtcattagc ggtggtagaa tctggcaaaa gaacattgtt
     1801 ttgctcttta gttttctatc cagccatttg agttgaaaag cataaattaa tgctaaaaag
     1861 aagagagcat aagaaaataa tgcaatccct aaatggaaaa gcagtcccgc attttcttgc
     1921 acattacgga taaaactacc ttttacaaat ccagccaccc ccacactaca aatggcgaaa
     1981 gagtacacaa taattaaagg aaaccaaacc gttttccatt ttaacaacgc aagtgtgaca
     2041 caagccgcca taatgaaact catcaaagag attacatttg ttaccgtaaa attctgccct
     2101 tcgattaaaa ataattcatt atataacaca gaaaaatgca aaatcgtggc aagtaaccca
     2161 aacccaaaga ctaacatcat attaggcttt ttattaactg ttgcggcatt ttctaaattc
     2221 actagagtag gggcaaccca aagtagcgct agagcgtaag caacaatgga taaaagagga
     2281 agtaacatat tgtctcgaat ctcgtcaaat aagaataact atcagaattt taatcaaaag
     2341 taaccgtttt agctagtttt tgctgttgct agatcaaaaa ttatcctaaa aaatgtgctt
     2401 ttcgccttaa attgaaccct accttttctc ggtaagatta tctcactgaa aacaataatt
     2461 ttcctttgac taatttgctt tctatctgta atatgcacac cctatgcaaa aggtaaaact
     2521 accccttacg attgaccctt acaaagatgc tcagcgtcgc gttgattatg aaggctacat
     2581 ttcaggtaaa cttctaacac gcttgggtga atcagtatgt aatgtgcaaa gtgatgcaca
     2641 agtcactctc tcgttatatg tcgatccaca acgcctaact gtgattaaag gcacagcaaa
     2701 agtagatgtg gaatttgatt gccaacgatg tggtgacccg tttacacaaa cgctcgactg
     2761 ttcatttgtt ttcagtccgg tgtctaacat ggatcaggcg gacatcttgc ccgaaattta
     2821 tgaacctatc gaagtaaacg agttcggtga agtaaattta ctagatatga ttgaagatga
     2881 atttattctt gaattacctc tagtcccgat gcatagtgaa gaacactgtg aagtgtccgt
     2941 aagtgaacag gtatttggcg agttgccgga agaactggta caaaaaccaa acccgttcgc
     3001 agtattagct aatttaaaga aaaactagat ctaggagaaa gcccgtggct gttcaacaaa
     3061 ataagaaatc tcgttcacgt cgtgatatgc gtcgttcaca cgatgcatta acaactgcag
     3121 cagtttcagt agataaaacc agtggtgaaa ctcactttcg ccaccacgta actgcagacg
     3181 gttactaccg tggtcgtaaa gtaatcaaca agtaattcct ttcgaggttt atcttggttg
     3241 atatcactct tgcagtagat gtgatgggcg gggactttgg tccccgcgtt actattcctg
     3301 cactggaaaa agccttaaaa caaaatccaa gcctttcttt tttattattt ggtgatgaac
     3361 accaaatagc ccctttatta caaaaacaca cactactcaa ccaccccaaa atccaaattc
     3421 atcataccga acaagtgatt gaagctgatg ttccgttcac tactgcaatc cgccaaagca
     3481 aaaacagctc tatgcggtta gcgattgagg cagtaaaaga gggcaaagca caaggttgtg
     3541 ttagtggcgg taacactggt gcgttaatgg gattggcaaa attattgatt gaaccattac
     3601 caaatattga acgccctgca ctcacttcgc taattcctac cctcaacggc aaatccagcg
     3661 taatgttaga tttaggggca aatattgaag taagcaatca ccagctacaa caatttgcag
     3721 aaatgggaaa cctgtttgct caagtaatgc ttgatttagt ttaccctcgc ctgtctttat
     3781 tgaatattgg tacagaagaa aataaaggca cggcacaact tcaggcagtg catcaactgc
     3841 tgaaaaacag acaagactta aattacaccg gctttattga aagcgataaa ttaaccagct
     3901 atctcactga tgtgattatt tgtgacggct acaccggcaa tatcgcgtta aaagcgttgg
     3961 aaggggcagc taaaaatatt atttctctct ttaaaaaaga gaaagccgat tccaatattt
     4021 gccgtaacac caaacgatat ttactgaaag cgatgttcta ccgttactac cgcaaattgc
     4081 aacaaattaa ccctgaccgc cataacggtg cgaccttgct cggcttatct aaagtagtcg
     4141 tgaaaagcca cggcggggca aatatcaatg ccttttatta cgctattgat tatgcggtgc
     4201 aacaaattca aggcgacatt ccaaataaaa tcctagaggg tttaacccaa aaataagcga
     4261 actcaactgt tcgcttattt tcatttcttg tttcacttaa agatacaagc ggtcaaattt
     4321 gcaaaaaaat ttacccattc aaccgcttgt gtttagcctt ttaattttgc cactcgtaaa
     4381 ctaaccgcat tgcggtgtgc atctagcaat tctgcacttg ccattcgttc caccgtttcg
     4441 gccaaggcta gaaagccttg tggtgtcagc tcctgcaccg tcattcgctt gctaaaatca
     4501 gctaaaccta agctcgaata ggttttagtg tagccgtaag tcggtaaaac gtggttagtg
     4561 ccgctagcat aatcccccat actttccggc gaatacgccc ctaagaaaat cgagccggca
     4621 ttatctaaat ccgccaacaa cgagcgagca ttttcagttt gcacaattaa atgctcgggt
     4681 gcatatttat tactaatttc gaccgcttgt tgcaggtttt ccgcaataaa agtgcgactg
     4741 tgagccaatg ctttacgggc agtttcggca cgaggtaaaa ccgccacctg cttttctaat
     4801 tcttcatcga ctgcccttgc caagctctca cttggtgtga ctaaaatcac ttgggaatcg
     4861 gctccatgtt ctgcttgaga gagtaaatcg ctcgccacaa atgcagggtc agcaaactca
     4921 tcggcaatca ccaacacttc cgacgggcct gccggcatat caatcgccgt gccttcttgc
     4981 acaacttggc gtttcgcctc cgtcacaaac gcattgcccg ggccgaaaat tttatccact
     5041 ttcgctaccg tttgtgtgcc atttgccatc gcaataatcg cttgagcccc cccaactgcg
     5101 taaatcgttt ccaccccaca caaatgggcg gtgtagagaa tttcatcggc aatcggcggt
     5161 ggtgagcaaa gcacaatctt gttacaaccg gcaatttttg ccggcactgc aagcattaac
     5221 acggtagaga aaagcggggc tgaaccgccc ggaatataaa gccccaccgc attaatcggg
     5281 cgagtgatga cttggcaaca cacccccggc tgggtttcaa tatccacctc ttgattttgc
     5341 tgtgccttgt ggaaagcctc gatattcgct ttcgcatttt gaatcgcttg cttaagctct
     5401 ggtgaaatac ggctctgtgc ttgctgaatc tgctgttctg atacaactaa gctctctaat
     5461 tttactttat cgaacttttc agctaattca aataatgcct tatcgccgtt ggcaattaca
     5521 ttcgctttaa tttcattaac tgccgcttta atactctcgc caaccacctg tgccggacgg
     5581 gcaagatatt gctgctgctc agtttctgtt aaattgttcc aaattagggt ttgcatattt
     5641 attcctttta cgccaacatt ttctcaatcg gtaaaaccaa tacggaactt gcgcccattt
     5701 cttttagctg ctccattgtt tcccagaaca ggttttcttg gctgacaacg tgcattgcca
     5761 cacgggtttg gtcgttagct aacggtaaaa tagtcgggtt ttccacaccg ggtaataaag
     5821 cggtaatttc cgccagtttg tctttggggg cgtgcagcat aatatactta gattcgttcg
     5881 cctgttgcac accttgaatg cgggttaata atttatccac taacgcttgt ttttccgctg
     5941 aaagtggttc ttggcgttga attaggcaag cagttgaacg gtaaatcact tcaacctctt
     6001 ttaatccgtt cgcctctaat gttgcacctg aagaaaccaa gtcacaaatc gcattcgcaa
     6061 ttccggcact tggagcaact tcaaccgaac cggtgagtaa aatactttta aacggcacat
     6121 tttgctcttt catataccgc tttaataaat tggggtaaga agtggcaatc acagcatctt
     6181 ctaaatcttt gatattgtta taatttttat cacgatcaat agctaacgat aaacggcagc
     6241 caccaaaatc taactgacga agttttttat aggcaacatt ctcaccagca cttaatcgcc
     6301 ctaattccac ttcctctaat acattttcac cgataatccc aagatcaact acgccgtcaa
     6361 aaactaagcc tggaatgtcg tcatcacgca cccgtaaaat ttcaatcggc atattttctg
     6421 aataggcaat caggcgttga tcgttccaaa tgattttcac gccacattgt ttaagcaact
     6481 cactacattc ttggcttaag cgaccttttt tctgcatcgc aattcttaat cgattttgtg
     6541 ttgtcattgt tgtttccttc ttatgtttta aattgtaaaa ataaaaaaac ctctcgaaat
     6601 cacttccgag agggttaaat ttatgctgcg tttaggcgta ctcggaagtc ttatcttccg
     6661 cacataccaa atgcccgaaa gattattcag gtaaatgatg gtggtgatga gtacgaataa
     6721 aagccatttt gttgttctcc aaactaaatt gctttaaaag atacgcttaa attttggcaa
     6781 tgacaagtgt tttttgcgaa aaaattgcta tttttcatct ctctaaaaca actatcgcaa
     6841 acgtttgcgt aaagcggtat aatttgcctg attttttgca aattcaacaa agtaggaata
     6901 acactatgca aatcagcctc aaaaagatct actccggcaa agtccgtgat ctctacgaaa
     6961 tcgatgaaaa acgtatgctt atggttgcca ccgaccgatt atctgccttt gatgttattt
     7021 tagacgatcc tattcctcgt aaaggcgaaa tcctcaccca aatctccaac ttctggttca
     7081 acaaattagc ccacattatg ccaaaccact tcaccggcga cagtgtgttt gacgtgttac
     7141 cgcaagaaga ggcagaagct attcaacatc gtgcggtggt ttgcaaacgc ttaataccgg
     7201 tgaaaattga atcgattgtg cggggttatt taaccggctc cgggctgaaa gattaccaac
     7261 aaaccggcac gatctgcggc ttaacattgc cggaaggctt ggttgaggcc agcaaattac
     7321 cgcaaccgat cttcacaccg tccagcaaag ccgaggtggg cgatcacgat attaatatca
     7381 gctacgaaga gtgtgaacgc cagatcggtc aagaacttgc cgccaaagtg cgtgatgccg
     7441 ctctaaaact ctacactgaa gcggcaaact atgccctgac caaaggaatt attatttgcg
     7501 acaccaaatt cgaattcggc ttagacgaaa acggtgaact aacgctaatg gacgaagtcc
     7561 taaccccgga ttccagccgt ttttggtcag ttgaaaccta ccgagaaggc acaaatccac
     7621 cttcatttga taaacaattc gtgcgtgact ggctggaaaa tagcggttgg aacaaacaac
     7681 ccccagcccc gaaaataccg gcagaggtaa ttgaaaaaac cgtagcgaaa tatcaagaag
     7741 cattggattt attaaccaaa taacaccaca agcggtcaaa tttacgctat tttttgcaaa
     7801 acaaaaacct gtaagccaac acttacaggt tttttagtta gtggtaaaaa gtgcggttat
     7861 tctaccgcac ttttgcaaaa ttttgtgtaa atctgaccgc ttgttagcct tgcgaagaaa
     7921 tacgtttcat atctgtcata taaccacgta attcttgacc gattaactcg attgggtggt
     7981 tacggattgc gtcattcaca tcacgtaagg taacgttgtc gatttccact gccggagttg
     8041 gttcacctaa atcgcctttc tctaacgttg ggataatttt ctccgctaaa atcggggttg
     8101 caacgtgaga gaataagtag ttaccgtatt ctgcggtatc tgaaattacc acgttcattt
     8161 catataaacg cttacgagcg attgtatttg cgattaacgg taactcgtgt agagactcgt
     8221 agtaagccga ttcttcataa ataccggctg aaaccattgt atcaaaggct aattcaaccc
     8281 ctgctttcac cattgcaacc attaacacac cgttatcaaa gtattcttgc tcagaaattt
     8341 taataccgtc tgcttgtggt gcgttttcaa aggctgtttt acctgtttct tcacgccatt
     8401 ttaataagtt ggcatcgccg tttgcccagt ctgccatcat cgttgatgag aactcaccac
     8461 tgatgatgtc gtccatatgt ttttcaaata agaacgctaa ttcttctttg atttgctcag
     8521 aaagctcgaa cgcacgcaat ttggcactgt ttgataagcg atccatcatt aaggtgatac
     8581 cgccttgttt taacgcttcg gtaatggttt cccaaccgta ttggatcaat ttacctgcgt
     8641 aagccggatc tttaccttcc gacactaatt tgtcgtagca cacgattgaa cctgcttgta
     8701 acataccgca aagaatggtt tgttcaccca ttaaatcaga tttcacttct gctacgaatg
     8761 aagattctaa tacgcccgca cggtcaccac cggtagcact tgcccacgct ttcgcaatgg
     8821 ctaaaccttc gcctttaggg tcattttccg ggtgaacggc aattaaggtt ggcacaccga
     8881 aaccacgttt gtactcttca cgcacttccg tgcccgggca tttcggagcg gtcatcacaa
     8941 ccgttaaatc cggacgaatt tgctcacctt cttccacaat gttgaaaccg tgtgaataac
     9001 caaatgccgc accttgtttc attaacggca ttacatcggc aactacttta gagtgctgtt
     9061 tgtccggcgt taagttaatg actaaatccg cttcaggaat taattgctcg taagtaccca
     9121 ccacaaagcc gttttcagaa gcacgtttaa atgaagcacg tttttcagca atcgcttcgg
     9181 cacgtaaagc gtaagcaata tctaagcctg aatcacgcat atttaaacct tggtttaaac
     9241 cttgagcacc acaacccaca atcacgattt ttttgccttt taagaaattg cagccatctg
     9301 caaattcatc acgatccata aagcggcaac gacctaactg gtctaatttt tgacgtaaat
     9361 ttaaagtgtt gaaatagtta gccatttttt aatccttatt tgaattaatg agattgatat
     9421 gatgttttgt ttgcacattg ttatagtttg atttgattat accttaacct aacattgcgt
     9481 aaattgaaaa tattaatatt tcatattgca taaaatgcaa cttgcaaaaa ttttgccaaa
     9541 tttaaccact tgcaatctct acgataaagt agaaaataac cacctaattt aatagaagat
     9601 caaaaaatga aaataaacag aatcatttta caaagctgta gcgaatgtgg gcaacaagtg
     9661 cgagtcccgc tcacgtcaaa tggcaatgcc gtttgcccgg tctgccataa tatattacgc
     9721 aaaagcaata cttggagctt gcaccgtagt gcttttttgg cattagccat tttaattttg
     9781 cttcccttcg cacttacttt tcccttgatg agcattgact tactcggcat caaaattaat
     9841 gctaccgtat gggacggtat ttggaagatg gcaacggagg gctaccctta caccgctttt
     9901 atggtgctag tctgcgcggt aataatgccg attgcatttg tattgctaat tttaaccatt
     9961 cagctacaac gtattattcg ccaacgcccc cgttacacgc tgattttctt aactaaaata
    10021 aaagaatggg taatgcttga tgtctattta gttgctcttg cggttgccgc ttttaaaatt
    10081 cgagattatg ccgatctaca attcgatatc aacttaatcg cctttgtgtt ggtaacactc
    10141 ttaaacaccc tactttttat taaaaccgag ccaaaacaag catgggaacg tttttaccca
    10201 gaatatcacg ccttgccgtt tgatcaccca agcaatccaa cactttgccc gacctgtgaa
    10261 tattgctttg atgaaactat tttagactta aaaggacggc aacgctgccc tcgttgtgaa
    10321 agcaatttat ctatttccga caacgtaaaa atacaacggg tttgggcttg cttaattgca
    10381 gggactatta tgatgattcc ggcaaatatt ttcccgattt cgacaactga actggcaggt
    10441 caggtttcgg cagattcatt aatgtccggc gtgcttctgt ttatggaaat gggtagctac
    10501 accgtggcag cgattgtgtt tatcgctagt attgcggtgc cggtgagcaa aattaccatt
    10561 attttttatc tcttgctggc aattcattac aagtggaaac acccgattca ttggcaaatg
    10621 aaactactac actacgtcca ttttgtcgga cgctggtcaa tgctggattt attcgtgtta
    10681 tcattgatga tgtcgctact cgaacgaggg cagattctca gtttctcggt aggggaagcc
    10741 gctttctatt ttggagcagc cgtattctta acgatgtttg cctctgcaaa tttagattcc
    10801 agaatgttgt ggaagattca tactgtccag aaaacatcct aaataaagat tttccgataa
    10861 ataatacata acatgcaaag taagaaaagt agtacgtaac ccaaaatctc aatccctatt
    10921 gagtaagaaa gagccgataa tgtagcaccg atagccagaa agaaattagc aaatataaaa
    10981 tagtctttac tatatttact tgaggcaatt agggtatcca ttgcagtact aaagaacatt
    11041 tccaaatacg tgacacccac taatacaata aataat
//
LOCUS       DANLXK010000084        10831 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.085, whole genome shotgun sequence.
ACCESSION   DANLXK010000084 DANLXK010000000
VERSION     DANLXK010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10831
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            46..378
                     /locus_tag="PXD88_001810"
     CDS             46..378
                     /locus_tag="PXD88_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6281365.1"
                     /translation="MALSVSSILSSQATYAEETTAELSEVNVVAKEDVKASIEKKNKE
                     IIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNRVGISIDGVSLFLIQKKI
                     PFINAMVI"
     gene            345..2423
                     /locus_tag="PXD88_001811"
                     /pseudo
     CDS             345..2423
                     /locus_tag="PXD88_001811"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            2478..2984
                     /gene="hutX"
                     /locus_tag="PXD88_001812"
     CDS             2478..2984
                     /gene="hutX"
                     /locus_tag="PXD88_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL6281366.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(3064..4281)
                     /locus_tag="PXD88_001813"
     CDS             complement(3064..4281)
                     /locus_tag="PXD88_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL6281367.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            4442..7975
                     /gene="mfd"
                     /locus_tag="PXD88_001814"
     CDS             4442..7975
                     /gene="mfd"
                     /locus_tag="PXD88_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL6281368.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            8138..8425
                     /locus_tag="PXD88_001815"
     CDS             8138..8425
                     /locus_tag="PXD88_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL6281369.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            8426..8638
                     /locus_tag="PXD88_001816"
     CDS             8426..8638
                     /locus_tag="PXD88_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL6281370.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            8754..9014
                     /locus_tag="PXD88_001817"
     CDS             8754..9014
                     /locus_tag="PXD88_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL6281371.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            9015..9404
                     /locus_tag="PXD88_001818"
     CDS             9015..9404
                     /locus_tag="PXD88_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL6281372.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            9424..10662
                     /gene="pepT"
                     /locus_tag="PXD88_001819"
     CDS             9424..10662
                     /gene="pepT"
                     /locus_tag="PXD88_001819"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL6281373.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
BASE COUNT         3250 a         2162 c         2475 g         2944 t
ORIGIN      
        1 tttacctctt attcaataaa gtctaaaaaa ttgtgcccga ctatattggc tttaagcgtt
       61 agtagcattt tgtcttcaca agctacctat gcggaagaaa caacagcgga attatctgaa
      121 gtaaatgttg ttgctaaaga agatgtgaag gcttctatag aaaagaaaaa taaagagata
      181 attcagcaag agttgattca aaataatcga gatttagttc gttatagccc tgatgttggc
      241 attgttaacc aaggtagaca tcaaaaagga tttgctattc gtggagtgga agacaaccgt
      301 gtaggaataa gtattgatgg tgtctcgctt ttcctgattc agaagaaaat tccctttata
      361 aacgctatgg taatttaaat acatctcgcc aatctataga tccggaatta gctcgtacta
      421 ttgaagtatc taaaggtgca gattctttca atcaaggtag tggtaattta ggcggcggag
      481 ttaattatcg gacgcttgag ccttatgata ttgttcgtaa cggtaataaa tttggtgctt
      541 tttatcgcac aggatatggt actcgtaata atgaatggtt gaatacattc ggtgttggat
      601 atttaggtga gaaagctgag gcgatattgg tttattcaaa tcgccatggg catgaaatga
      661 aaagtgcagg aggttataca cttcctgaag attctctaca aactcgctct ttacgcagta
      721 gtaaacaaac tcctgatgat tctactcata atcatcataa ttatttagcc aaatttgctt
      781 atcgatttaa tgataatcac cgcgttggtg tttcttacag tgggcaaaat aataaaaatt
      841 atattatcga agattcagcc gttactatta cttctttttg gcgtgaagcg gaagaccgta
      901 gtaaacgtga tacagtaaat gttttttatg agtatttccc agagtcaaaa tggatatctc
      961 tagcgaagat agatgcagat tatcaagata ctgaaacatc tgcttataac tatgaaggta
     1021 cacgcgctga agatgcaaca gactggagcc ctgctaaaca aagaaaacca agtgacaata
     1081 atattcgtat ttttaatact gaattgaaac gcttaaattt ccgtttagac agccaagcat
     1141 tagaatttgg taaatggact catcagctat ctttcaaagc ctctactgca gagagagatt
     1201 tcgatgtatt acataaggac tcggtttatt tatccggtgt ttgggtaaat tctcccgatt
     1261 ctacgatgat gtacccaatt aaaacgaaac agcacacttt ttcattgcac gataagattg
     1321 atttaacgca tgattggatt gcaacgctag gcattcgtta tgattgggcg aagtatgaac
     1381 aacaagaact caatggtctt gtttgtcgta actgcgtaaa aactgacaat gcgaaattta
     1441 atcaactaac ttgggttacc ggtttagaaa aacatctgac tgaggcatgg aaagtaggat
     1501 ataacattgg gacaggcttc cgtattccaa atgcatcaga aatgtatttt gattaccgtg
     1561 ataatgctgc aggagcttgg atgtccaatc caaacctaaa agcggaacgt agtttaagcc
     1621 aaaatttaag tttgcaaggt agtggcaatg ttgggctgct ctcagttaat ttccaccata
     1681 ctaaatataa agatttttta tgggagcaag aaacctggga tgtttaccaa gcatatggta
     1741 gagagttttg gcgcccggta cagcaaatgc aaaatattga ttctgcgaaa atctacgggc
     1801 tagaagtgag tggtaaatgg aatttaaatt cagctatgcc aatacctgaa ggctggaagc
     1861 tatttggagc cttcggttac agcaaaggta gtatgtctaa cggggcagat ttactttcta
     1921 ttcagccgat taaagccgta gttggcttag attatgaaca acctgaaggt aaatggggag
     1981 tattttctcg cttcacattc ttgggggcta aaaaggcgaa agatgcaaaa tatttaaaaa
     2041 cattaccgga aaaatgcctt aaagaggata gaacgccaaa tccgtattac ccttattggg
     2101 gggatgaata tgacattcgt tgtactgaat attctcacga gacaggttta gatacctgga
     2161 agcacttaaa tgctaaagcc tttgttgtgg atttatacgg tttctataaa ccaactgaga
     2221 atattacatt acgtgccggt atttataatt tgtttaaccg taaataccat acttgggata
     2281 ctttacgtgg tttaaataca acaggtggaa tcgttaattc tgttggagta cgtgaaaatg
     2341 caacttacgg tggctatcct ggattacaac gctattatga acctggacgt aacttctcgg
     2401 ctaattttga ataccgtttc taatttacaa atttacttag agagctaaga aactctcttt
     2461 acttaaagga acatttaatg atatcaatcg aacaacaaac cgccttacgc aatgaattag
     2521 ccgaaaatcc ggggcaaatt ttagaaatgt tagcggcaaa atatcaatgc acgctggaag
     2581 aggtaatgct gaatttaccg gctgaaatgc taaaagtaac cgaaggggaa cgttttgccg
     2641 aagtgctaca gcaaatccac gaatgggacg atgcgattac gctgatttcg catacggaag
     2701 ataccattat tgagtttgtg ggaaagctcc caagcggttc aatttctcgt ggattttaca
     2761 atttcgaaca taaagagggc ggaggcttac aagggcatct acgctacgaa aattgtgcca
     2821 aaatttattt gttggatcgt ccttttatgg gaaaacgtac tgtttcactg attttcatta
     2881 ataaaaaagg caacgcaatg tttaagattt ttgtcggcag agagaaaatt ggcggggcat
     2941 taaaagagca tcaaattaag gcgctgtatc agttgattgg ctaatctgta aaaagtcatc
     3001 gaaaaatgac cgcttgtaac ttatagaaag ggctacgata ttgaatcgta gcccttttca
     3061 atattagcct accgcttgcg gtaaatagcc agcctgaatt aaaaacggaa tgaccataat
     3121 gataataccg gcaattaacg caaccactaa tgccaaatta ccaccaatca cacggtaagg
     3181 taaattcgga tattggcgac gtgctttcca cgctaagccg ataggtaaaa tcataccata
     3241 gaacgcaaag agtaaaccgg cgtaacctaa tgccttaata aagccgttcg gatagaataa
     3301 agcgaacaga attggcggtg taaaggtggc gatggtcagc cataaacggt tagtcggtag
     3361 atttaagcgt tttaacaaat cgcccacgcc ttcaaaaatt cccatcgaaa cccctaaaaa
     3421 tgaggtaatc aatgcaagca ctgagaataa gcgaaccatt tcgcctaaaa tcgtactacc
     3481 ggtaatctgg ctagtggctt tcaccaagcc gtttaaggtc ggatcttgtg tcaaaattgt
     3541 ggtgaattca ttttggctta ataccccgtg tgtagcgagc tgccacaata aataagccac
     3601 tagcggaatt gccgtcccga tataaataga tttacgaatt ttgccgatat ctgcgtctaa
     3661 atagctatta attgttccca taataacgtg gaaaccgaac gcagtgaaga aaatgggtat
     3721 agcagaaata atgagtaagt tatctaatgg aattgctgtc aagttttcca gcttcgcttt
     3781 aggcagcatc atcagcaaca cggcaataaa agcaacaatt tttcccaaaa acagtactcg
     3841 ggttaaacca tcaaccgatt tcacgccgac taccacaaat gtacctaata ccgcagtgaa
     3901 gattaaaatg ctgattttca gtttcatatc agcatctgcc atttcaggca ttacaccggc
     3961 taacagtgaa ccaccaccgg taatataagc cgcaagtagg gcataaagta gtacgagcaa
     4021 actgaaagtg gctaatacac gcccgattaa gccaaagtat tgctcggcaa ggcttgccac
     4081 tccaacatct ttttgcggag cggtttgata aacttccata aataataaac cggtgtaggc
     4141 caataaagcc cataatccga ctaagagtaa tgcggttgcc ccaaaaccca ttcctgcaga
     4201 ggtgagtggc attgcaagca ttcctgcacc aatggtagtg cctgcaatca ttaatgcact
     4261 tcctaaaatt ttatttttca taatatgtgt gagtaagagt taaaaaaggg gaacatttta
     4321 tcagaatttt ttcgcaatgc gatctagata acataatttc tccgcttatt ttgcacaatc
     4381 agccgtgctt tagtaaacta agcaacaatt tgcaattttt tatttaaaac agaccgcttg
     4441 tatgtcttta atttcactta atctgccgaa atctgacggc aattttcaag atcatcaaac
     4501 cctcggtaac cttgtcgggc attccgatac ccttgcgatc agccaagctg cccgagcctt
     4561 ttacggcttg acggtggttg tcacacccga cacccgcacg gcgttacgct tggaaaaagc
     4621 cttgcctcag tttgcagggc tgccagtgca actgttcccc gattgggaaa ccttgcctta
     4681 tgacaatttt tcgccgcacc aagacattat ctccgcccga ctttctgccc tgtttgaact
     4741 gcaacaaggg cgacagcaga ttttgctgtt gccgatcaac accttaatgc agaaggtctg
     4801 cccgccgaat tatctcgcta acaatgtgct gttgattaaa aaaggcgacc gtttttcgat
     4861 tcaaaaactg cggttacaac tggaaaatgc cggctatcgg gcggtggaac aggtgttgga
     4921 atatggtgaa tacgccgtgc gtggctcgat tttagaccta ttcccgatgg gagcagaaga
     4981 gccgtttcgc ctcgattttt tcgatgatga gatcgacagt atccgcactt ttgatgtgga
     5041 taaccaacgc accaaaacgg aaattgccga aattaattta ctgccggcac acgagttccc
     5101 gactgatagc aacgggatcg agcattttag agccaaattc cgtgaaaaat tcggtgaaat
     5161 ccgccgtgag ccggagcata tttatcagca agtcagcaaa ggcattttaa atgcagggat
     5221 tgagtattgg cagccgttgt tttttgagga aatggcaagt ctgtttgact atttccctgc
     5281 ccaaacgctg tttatcactt tcgccgatat tcagcaaaaa gctgaacaat ttcaccaaga
     5341 tacccaaaac cgctatgaaa gccaccgagt ggatccgatg cgaccgctac tgccgccgag
     5401 tgatctctgg tttgcgattg atgaggtaaa tcgctggctg aaaggctatc cccgtttaac
     5461 gataacttcg gagaaaatcc gtaaatcagc agcgaaaatg aatgcaaatg tggctaactt
     5521 gccggatatt gctattcaat cctctgccaa agagccgttt tctgctttcc agcaattccg
     5581 ccaaaaattt gacggcaaca ttctgttttc ggtggagagc gaagggcgaa gagaaacctt
     5641 gctggatttg cttgctccgc ttggggtgaa gccgaagcag gtcaattcat tagatgaagc
     5701 acaaggtttg ccattttccc tgattatttc accgcttgat caagggtttg tggtggaaac
     5761 gggcgggcac gggacccgtc cctacgatga tgaattaaat acaaatggcg aaaatgataa
     5821 taactacgta ggggcgggtc ctgtgcccgc ccgcaacctt gccatcatct gcgaaaccga
     5881 cctgctgggc gaacgtgtgc aaacacggcg tgagaaaaac cgcaaagccg tcaatcctga
     5941 taccttaatc cgtaatttag cagaactcaa aatcggacag gcggtggtgc atttggaaaa
     6001 cggcgtgggg cgttacggtg gcttaaccgt gctggacgct ggtgggatca aagccgaata
     6061 tctcgtgcta cattatgcta acgatgccaa actctatgtg ccggttgcct cgctccattt
     6121 aatcagccgt tatatcggtg gggcggatga aactgcgccg ctacataaat taggcagtga
     6181 agcgtgggcg aaaacccgcc aaaaagcagc ggaaaaaatc cgtgatgtgg cggcagaatt
     6241 gcttgatgtt tatgccaaac gagaaagcca aaccggtttt gcgtttgcct acgataaagc
     6301 ggaatttgat cagtttagtg ccactttccc ttatgaggaa acggacgatc agaaaattgc
     6361 catcaatgcc gtaattagcg atatgtgcca agccaaagcg atggatagat tggtgtgtgg
     6421 cgatgtcggc ttcggcaaaa ccgaagtggc cattcgagcg actttcttgg cagtgatgaa
     6481 ccataaacag gtggttattc ttgccccaac taccttgctc gcccaacagc attatgagaa
     6541 tttcaaagac cgtttcgcca attaccctgt gaatgtggaa gtgctgtctc gctttaaaac
     6601 cgccaaagag cagaaaacga ttttgcaaaa tgtggcggag ggcaaagtgg atattttggt
     6661 cggcacgcac aaactgttgc aagacgatgt agcgttccgt gatcttgggc ttttagtgat
     6721 tgatgaagaa caccgtttcg gcgtacgcca aaaagagaaa atcaaacaac tgcgtgccaa
     6781 tgtggatatt ctgaccctca ccgccacgcc aattccaaga acgctgaata tggcactcaa
     6841 cggaatgcgt gatctctcga ttatcgccag cccgccggct cgccgacttt taatcaaaac
     6901 ctttgtgcga caaagtgatg aaatggtaat ccgtgaggca attttgcgtg aaattctgcg
     6961 tggtgggcag gtttactacc tccataacga tgtggcaacc attgaaaatt gtgccgagaa
     7021 attggctgaa ctcgtgccag aggcaagaat tgtgatcgga cacgggcaga tgcgtgagcg
     7081 tgaattggag cgggtgatga gcgatttcta tcatcaacgc tttaacctgc tggtttgctc
     7141 caccattatt gaaacgggga ttgacgtgcc gactgccaat accattatta tcgaacgggc
     7201 ggacaaattc gggctggcac aactgcacca actgcgtgga cgggtcggac gctcgcacca
     7261 ccaagcctac gcctatatgc tcacaccgca cccgaaaacg ctcaccaaag atgccgagca
     7321 acgcttggag gcgatgagta ccattgataa tctcggggcc ggttttgcgt tggcgaccca
     7381 cgatttagaa attcgtggtg caggcgaatt gctcggttcg gagcagagcg gacagattga
     7441 aagcatcggt ttttcgctct atatggactt gctcgaaaat gcggtcaaag ctttgcaaga
     7501 agggcgagaa ccgagcctcg atgaaatcac ccaacaccaa gcggagattg aattgcgtgt
     7561 accggcctta ttgccggacg attatctgcc tgacgtgaat atgcgtctgt cgttctacaa
     7621 gcggatcgca agctcggaaa atctgcaaag cctgaacgac ttgaaagtgg agctgatcga
     7681 tcgcttcggc ttgctcccag aggcaaccaa aaacctgttt gcgataaccc aacttcgctt
     7741 gtcggcacaa acgctcggga ttaagaaaat cgatgccggc attcacggcg gttatcttga
     7801 atttaaaccg acagcccagc ccgacccaat gaagtttatc gccttaatcc aaaaacaacc
     7861 agcggtgtac agttttgaag gggcggtgaa gttcaaattc cgcttagcac tcgaagacaa
     7921 ccgcaagcgg ttagaatttg tggaaaattt gctaagggag gttgtgggcg gataaagcct
     7981 cctaaggttg tcaatcttga aaaacgattt ttgcgatctg tatcgtaaaa atcgtttttg
     8041 tttattgcga atccagtaat ttcatctagg ctgtttataa cttaaaaaaa tagatgtaaa
     8101 tatattttat ttacaattaa aaaggagtaa actggcaatg gaagaaatta atggttttga
     8161 atgggatagt gagaaagctc ttcgtaatca acaaaaacac ggagttagtt ttatcgaggc
     8221 ggtaagcgta ttttatgata ataatgcgat gttaatcccg gatccagatc actcatctag
     8281 ggaagagcgt tttttgctac tcgggcgtag caataaagat aatctacttg tggttgtgca
     8341 ttgcgagaga aataccaaca ttcggattat ttcagcacgt ttggcaacaa aacgcgaaag
     8401 tgggcaatat aaaggagtac attaaatgag agatgaatac gatttttcta atgcagtgaa
     8461 aaacccttac gcaaaagggc taaaaagcaa aagtgtggtt actattcgga ttgaagacga
     8521 tgttatcagc tattttaaac aacttgccga agaggtgaat ttgccttacc aaacgttgat
     8581 caatctttat ttgaaagatt gcgttgagca gaaacgtaaa ccgactatta gttggtaata
     8641 ttatgatttg aaatcagtat gttattgagt atttgagaat gggttatctt gccagttgta
     8701 taaaataggc atatactttg gcatatacac tatctatcgg agggtaaagt aagatggaaa
     8761 aaattgcgag attattccgt aacgggcgga accaagcagt gcgtttaccg gttgaatttg
     8821 agtttgatgc agagcaagtc tatgtttcta aaaaagaaaa tggcgatatt ttattatcat
     8881 tgagatcgag aaataccgag cattggcaac gattgtttga gctattgcct gctgttgtat
     8941 gtgatgaaac atttttagat acaaaagaga gaaaccaatc ctttgagcaa cgggatcctt
     9001 ttgaggtagc ttaaatgtat atgttagata cgaatactgt aagctatttt tttcgtggaa
     9061 atgcaaatgt ggtggcgaaa ttgaagtcca ttaatcctga gaggctttgt atttcatctg
     9121 taactgctgc tgaattggtt tatggtgtgg cgaaaagaaa taatgggcag ctttctcaat
     9181 ttttagatta ttttttatcg agtgtaaagg ttttagattg gaattatcgt tgtgctgaac
     9241 tttatggaaa gttacgggca gagatggaga aaaatggcaa agtaatgggc gtgcaggatc
     9301 aaatgattgc tagtcacgct cttgctgaag agtgtatttt agtttctagt gatcaggcat
     9361 ttaaaatggt acctgatctg aaattggaga attggttaca ctaaactata gtaaggaaaa
     9421 acaatgaaac aatcccttct taaccgttta ctacgttaca cccaaattca cacaacttca
     9481 gatccgaaaa gccaaactgt gccaagctcg caacagcagt gggatttgct tcatctgctg
     9541 aaaacggaag tagaggcgat ggggctaagc gagatttatc ttgaccccaa cggctatctg
     9601 ttcgccagct tgcctgccaa tattgacaaa accctgccgg tgcttgggct gattgcccac
     9661 gttgatactt cgcccgattt taatggtgaa aacgtgaaac cacaggtgat tgaggcttat
     9721 caaggcggca atattttgct aaacggcagt ggcgattatc tttcgccaac ggatttcccg
     9781 aatttaaaca agctgattgg cgacacctta gtcaccactg acggcacctc tttgcttggc
     9841 gcagacgaca aatccggcat tgcgattatt ctctcggcta tcgagtattt acaagccaat
     9901 ccgcatattc cgcacggcaa gatccgcatc ggctttacca ccgatgaaga gatcggtcga
     9961 ggcgcagatc attttgatgt aaacgcattc ggtgccgatg tcgcctttac ctttgatggc
    10021 gggcctctgg gcgaattgca atatgaaaat ttcaatgccg atgcagcgac cgttacgttc
    10081 ttcgggcgta gcgttcaccc cggcacggca aagggcaaga tgatcaacgc cttagagcga
    10141 gcttgcgagt tccaacaccg tctgcctccc catttaaccc ctgccaccag cgaagggcgt
    10201 gaaggcttta ttatgttgca cggcattgag ggtggaattg ataaagcgga aattcactat
    10261 attttacgta gctttgagcg tgatgaatta gctgcattcg gcaaaatgct gaatgatacg
    10321 ctggcagaga tgcaacagat ttacggcgaa cattgcggaa aagtcgagat tgtcgagcaa
    10381 tatcgcaata tgcgtgaagt gctggacgat tacggctact tggttgaaat tgccgaaaac
    10441 gcaatgcgtg aacaaggcat tgagccgaat ttagaaccga tccgtggcgg tactgatggc
    10501 tcacgccttt catttatggg cttgccttgc ccgaatttat ttaccggcgg cgaaaatttc
    10561 cacggacgat ttgagtttat ttcggttgat acgatggaaa aagccacaaa agttgtaatt
    10621 gatatttgtc ggaaatttgc tgattatgat ttcaacaaat aaggcggctg caagcggtca
    10681 aatttgatga aaaatttgca aaaagcgtta tttttcacca attaaacgat tttttacaga
    10741 tttcctacaa atttatttga cattaaatct gaaatccata gaatatgcac ctgttgagac
    10801 tctacgaggt tcgtagcgtt tttaaatgcg g
//
LOCUS       DANLXK010000085        10812 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.086, whole genome shotgun sequence.
ACCESSION   DANLXK010000085 DANLXK010000000
VERSION     DANLXK010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10812
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            126..1244
                     /gene="malK"
                     /locus_tag="PXD88_001820"
     CDS             126..1244
                     /gene="malK"
                     /locus_tag="PXD88_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL6281374.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
     gene            1342..2631
                     /locus_tag="PXD88_001821"
     CDS             1342..2631
                     /locus_tag="PXD88_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL6281375.1"
                     /translation="MKKTVLAVAISGAMFAASASAVDFHGYARSGIGWTSGGGEQSAF
                     TVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAYGGTLHNNDWTPTSPA
                     LRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDISGPGAGVENIDLGFGK
                     LSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADVYNDIFDVRLAGIELW
                     KDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFFGGFNKFTAQYATDSM
                     TSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYEKTKLDNKQGKTWYSA
                     GIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQWQAGNSIWARPAIRVF
                     GTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
     gene            2712..3608
                     /gene="malM"
                     /locus_tag="PXD88_001822"
     CDS             2712..3608
                     /gene="malM"
                     /locus_tag="PXD88_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL6281376.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(3768..5636)
                     /locus_tag="PXD88_001823"
     CDS             complement(3768..5636)
                     /locus_tag="PXD88_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL6281377.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(5667..8204)
                     /locus_tag="PXD88_001824"
     CDS             complement(5667..8204)
                     /locus_tag="PXD88_001824"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL6281378.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNVYVVDERNNVESYYNCFGNKEEKIRKINKLQNEK
                     QLKTETPASFGSFNHPQFYQLISPNGELCIVPFQSRQHLDYLAQKHH"
     gene            8465..9682
                     /gene="fabB"
                     /locus_tag="PXD88_001825"
     CDS             8465..9682
                     /gene="fabB"
                     /locus_tag="PXD88_001825"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL6281379.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            9800..9946
                     /locus_tag="PXD88_001826"
     CDS             9800..9946
                     /locus_tag="PXD88_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281380.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            9915..10625
                     /locus_tag="PXD88_001827"
     CDS             9915..10625
                     /locus_tag="PXD88_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL6281381.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
BASE COUNT         3400 a         1952 c         2207 g         3253 t
ORIGIN      
        1 tttagataaa aaggcgacta ttcagcctaa aaaaaagtat tttaggatga tttcttcttt
       61 agataaaaag gcgactattc agcctaaata aaaccaacaa gcaaaagcag aaaagaggtt
      121 tagttatggc gaatgtatca ttacgtaacg tgggaaaatc gtatggtgat gttcatatct
      181 ctaaggatat taatttagaa attaacgaag gagaattcgt tgttttcgtt ggaccgtcag
      241 gttgtggcaa atctacgcta ttacgaatga tagcaggttt ggaagatatt acgacaggag
      301 aactctatat cggtggaaaa ctgatgaatg aagtagagcc ttcaaaacgt ggtatcggta
      361 tggtgttcca atcctatgct ctctatccac atttagacgt tgccgaaaat atgtcttttg
      421 gcttaaagct ggcaggtgta agtaaagcag agcgggatca acgagttaac caagttgccg
      481 aaatcttaca gcttgcccat ttattagatc gaaaacctaa agcactttcc ggcggacaac
      541 gccaacgggt ggctattggt agaacactgg tttcccaacc ggaagtattt ttactcgatg
      601 aaccactttc caaccttgat gccgcattgc gtgtacaaat gcgggtagaa atttccaaat
      661 tacataaaaa actaaaccgc acaatgattt atgttacgca cgatcaagtt gaagcaatga
      721 cattagcgga caaaatcgtg gtattaaatg ccggcggtat tgctcaagta ggtaaaccgt
      781 tagaacttta tcattacccg gcaaatcgct ttgtagcagg gtttatcggc tcgcctaaaa
      841 tgaacttttt accggtaaaa gtgattgcgg tagagccgga acgggtaaaa attgagttac
      901 ctgatgcgaa tcatcataat ttttggattc cggtttccgg cgaaggggtg aatgtgggag
      961 ataacttatc tttaggtatc cgcccggaac atttagttcc ttcggatcaa acccaagtga
     1021 ccttacacgg tattgtgcaa gttgtggaat tgctcggaaa tgaaacacaa atccaccttg
     1081 aaatccctga aatcaaacaa ccaaccttaa tttatcgtca aaacgatgtg gtattagtta
     1141 atgaaggcga cgatctgaat atcggtatat tgccggaacg ctgccattta tttaaggaag
     1201 acggtacagc ttgcaaacgt ttgtttgttg aaaaaggggt ataacaattt cagtttatta
     1261 ctgattttag agggtatttt caatcttcta atcaattaat aattaaccta agtaaaatca
     1321 aatcttaaga gaggttctat tatgaaaaaa acagtcctag cagttgcaat cagtggtgca
     1381 atgttcgcag ccagtgcatc agcggttgat ttccacggat atgcacgttc aggtatcggt
     1441 tggacatcgg ggggggggga gcaatccgca ttcacggtaa atggtggtgg ttcaaaatac
     1501 cgtttaggta acgaatctga tacctatgca gaattgaaat taggtcagga attattcaaa
     1561 agtggtgaga aatctatcta ctttgataca aaccttgctt acggcggtac gcttcacaat
     1621 aatgattgga caccaacaag tccagcacta cgtgaattaa atgtacagtt caaaaacttt
     1681 gcagatagtt taccaggtgc caccttatgg gctggtaaac gtttttacca acgccatgat
     1741 gtacatatga atgacttcta ttactgggat atttcaggtc cgggtgcagg ggttgaaaat
     1801 attgatttag gcttcggaaa actctcttta gcggttactc gtgatacaga gcgtggaggg
     1861 gcgaatactt ttggatatac tacagtttat aaattagatc ctagcacagg taaaattaaa
     1921 ttagataagc agcgtaataa agccgatgtt tacaacgata tttttgatgt tcggttagcc
     1981 ggtattgagc tttggaaaga tggttcgtta gagttaggct ttgattacgg taatgcacat
     2041 gctaagaaag gtgcagccct tgaaaaagga gcaaccaaaa acggttatat ggtaacagcg
     2101 gaatacactc aaggtaactt ctttggtggt ttcaataaat ttactgcaca atatgcaacc
     2161 gactctatga cttcttggaa taatgggcac gcacagggtt cgaaagcaga taataaaggt
     2221 aatatgcttc gtttaatcaa ccaaggggta gtgcaagcga gtgataaagt tgaagtaatg
     2281 tatgccttaa tctacgaaaa aacaaaacta gataataaac aaggtaaaac ttggtactca
     2341 gcaggtattc gcccaatgta caaatggaat gatacaatga gtacattatt agaagttggt
     2401 tatgatcgca ttaaagatca agcaacaggc aagaaaaatg acttggtaaa atacaccgtt
     2461 gcacaacaat ggcaggctgg taatagcatt tgggctcgcc ctgcaatccg tgtgtttggt
     2521 acttatgcac gttggaatga taaattcaac acgaaagctc gtaccgatgc cggctataaa
     2581 gccaaagacg gcgagtttat caccggtgtt caatttgaag cttggtggta atcatcaaac
     2641 ctttgtgtgg gtaggattac ctacccacta tttcagcact ttatcctatt tcacgatttt
     2701 taggggttaa tatgaaaaaa acgcttcttt cgacagcaat attcttcgcc catcttttgg
     2761 tggtgtctcc gagtatagca aatggctcgg caggtaagtc tattcatatt aactcggctg
     2821 aattagctca aattcaatgg caagatgtgc cattttcaca aaccgtaaaa acagatctaa
     2881 gcgagcaaca caaacaagca tttaccacag cgtttgccgg tattgccagc ccggttgcag
     2941 cttatcgtat tccggcaaat caaggcacat tggaaattga aatcgaaagc ccggtgatgg
     3001 acaaaaatgt ttttgtaccc acggcagtcg tgttggatag tcaatttaat gtggcatcaa
     3061 cttacccctc ttctgagttt aaattattgg aagagcgagg actcaaaggt agccgtttag
     3121 gggcagaact taatttaacg ccggcaatga accaagatta tatttacttg ctcatttata
     3181 ccacgcagca agatttagcc aaaaccacga tgatgccgca tccggcaaaa acctatgcaa
     3241 aagcaaccgg taaacaacca ccagcaatta acgatattga agtagcacac agtttaaaag
     3301 ggcaaattca catcaacgtt accggctcga acggcactaa atttattgga ttaccgactg
     3361 aaattttcag ctcaaacaaa gcagcaacgc cggcagctaa aacggctata ccgttgccga
     3421 taaaagaaaa tccagttgca gtaaaaacag cagtagataa agatacggaa gcctatttta
     3481 atcaggcggt aatgaaagcg attaaagcaa aagatattaa taaagcgatg aatttggtta
     3541 acgaggcaga aaaattaggg ctgacttctc cacgccaaat tttcttaaaa aatgtaagtt
     3601 caaattgatt tattgttttt ttcatagata ttctccttgt catcgtgcga tggtttatta
     3661 ccattaacac cctatcagat tatgccgata gggtgctttt ttacgagtga ttatgcgata
     3721 tgtataggaa ggcttatact tgaataagga ttcaaagtat aaattcttta atttttatca
     3781 gtgatatcca cttttataac ttctactgtc tcaccaagct cttctaaaat atcagccgtt
     3841 tcttcattaa gtgcactacc ttcgtgttgt ggatttaccc aaggtgttgg tacccaatat
     3901 ttgcggataa cttctgcgga gaaaccgtgt aataattcct cattaaagcg ttctgcatct
     3961 aatcggcgaa catagctgat aatttgtttt gcctcttcct cgctagaacc taagcgttca
     4021 atggcggctt ggcttaatgc gagggctgat tcaaaggttt ctcgaatgtg ataatcaacg
     4081 tggtgctttt tgactaaatc aaccgcactt tgtctatcat aggttctcgc aaatacaggt
     4141 actaaggggt attcagattt aatcagctct acgattttct ccgttctttc cggattgcct
     4201 acgccaacaa ttacgcagtt tgcattggcg atgccagatg ccctaagtac atctagtctc
     4261 gctccatcac catagtaaag tttaaaacca aaacgagcag cagcacgaat atgatcagta
     4321 tttgaatcaa taaccgatac acttagtcct ttggctaata aggcttggca gactatttgg
     4381 ttaaagcgtc caaaaccgat gactaataca ttggcttcta aatcttccgg taattcaacc
     4441 cctgtcatat tagtggattc atttttcgct tttttctttc tcactccttg cttgattaaa
     4501 atgagaagtg gggaaagcaa cattgagaca attaccgcag cggttaaggt agcgtgagta
     4561 tctggggtta aaatcccagc ggttgcggcg gctgagaata gcacaaaggc aaattcacca
     4621 ccgtgagcca taatggtagt tcgcacaata gattcattca gtgttaatcg ggtgatagag
     4681 gcagcaatga agattccaag gcctttaccg ataacataaa ctgctacaat caccaataac
     4741 catagccaat tattgaggac gaggctgagg tctaatgaca ttcctacgcc cataaagaat
     4801 aagcctaaaa gtaaaccacg gaagggttca atatcagctt ctagttgatg gcggaaagaa
     4861 gactccgaaa gcattactcc ggcaaggaat gcccccattg ccattgaaag cccactgatt
     4921 tccattaaaa gagcggagcc taataccaca agtaaggcag cggcagtcat catttctcgt
     4981 actttggctt tagaaataac acggaaaata gggttcatca gccattttcc actcgcaacc
     5041 aaaataagaa cggcaactag gctaagacca atagcagacc aattagtact ggattcagca
     5101 tctacttggt taggagcaag aaaggcaacc gaggctaata atggcacaat cgctaaatct
     5161 tcaaatagta aagttgcaac aatacgttgc ccttttggcg tggaacttat ccctttatct
     5221 tccagcactt gcattacaat ggcagtagaa gatagcgtaa aacccatacc ggcaataaat
     5281 gccacttctt tggaaaaacc taataagtaa atgccggcta aggttaataa agtaccgcaa
     5341 atcgcaactt gtaagaaacc tcgcccgaag atggctttac gcatcgccca aagcagttcc
     5401 gggtgcattt ccaaaccaat aataaacaaa aacataacca cgccaagttc tgccatatgc
     5461 acaacagcgg cagggtcttg gaacaatcca atgcccgatg gcccgattaa acatcctgcg
     5521 actaaataac ccaatacgct tcctaaacca aggcgtttaa atagcggtac aatagtgacg
     5581 ctggttgcaa gtaatgcgac tgttttaatt aattccggac taactaatcc tgacatagaa
     5641 ttcccacctg tataatataa ataagattaa tgatgttttt gtgctaaata atctaaatgc
     5701 tggcggcttt gaaacggcac aatacataac tcaccgtttg gtgaaataag ttgataaaat
     5761 tgtggatgat taaagcttcc aaatgatgct ggtgtttctg tttttaattg tttttcattt
     5821 tgtaatttat tgattttcct gattttctct tctttattgc cgaaacagtt atagtaactt
     5881 tcgacattat tacgttcatc tacaacatat acattaaaac tattatcgac attgtcttca
     5941 aagaaaaact gtaaaaagcc ttcactggca aattcactaa tttgctgcgg aaattctttt
     6001 ttcttttcat tttcgctttt agcattttgc ttggtttttg caaaagaatt taaattttca
     6061 accgcttgtt gttcatcaat ttgtttaatg ctaaatgttt ttttatgaaa aagaaactgc
     6121 caggtttttc ctgctacttt taaagtgcta aattcattct cttgcagtaa acaaccagtc
     6181 tgaattgtaa tacatttatg aactaaatct gccacaaaat cacgtaactc actacgtaga
     6241 tatttactat agcaaaaaac attaactgat tgaggtgaag aatttccttg ataaattcga
     6301 ttggatacca attttagtgc ttttaaaata gcatcttcac cgtcaaaatg ttgagttcga
     6361 atttcattcc atacatttcg ataaataatg ctcacactac caactaacgt tttttgtgcc
     6421 ttaccaaaat taaacagatc gcttggataa actttttttg gtagttcatc gatatgttcg
     6481 gttggatctt gtactaaatt aagcgctata accaaattgc gaatttcatt agggtgatgc
     6541 atgtcatcat tggtcacttc cggcgcttga attgggaaag ataagcgcaa gtcggtgata
     6601 aattgtcgca atttctcgat atctaaatta gggctaacag tatgtaaatt agttgctgcg
     6661 ttaataatgc cgttaaaata cccccaagca ataagcttaa tcgggctttt attataatgg
     6721 acataacgat tttcagagtc ataacgactt ttaggtgcct gattaactaa ataccaaccg
     6781 ggttgtaacg cagatccaac tttagcttca ataaatgtaa ttgctttttc tgctaaattg
     6841 gacgatattt tatgattaat taaagatatt tttcctggaa gtgcttcaaa tacagaataa
     6901 agttttcgca ttaaaatatc agtatcattt gtcataatgc tcggattaat atgaaatttt
     6961 cgagcaaaat gaattaaatt tcgataactt tgtagtaaat gatcaatcag catattctca
     7021 tgattcatca cttgcttaat tttccaatgt tgacggtttt gaagtaattg aatttgtttt
     7081 tctgaccaag accattggtt aaccagctcg tctaaatcac gacttctcca gttgttattt
     7141 atttctccct caaccgcttt tgcataaaaa cagactcgca agcggtctaa tttcacccac
     7201 tctttgcgtg atcttaagtg ttctgttacc aattcaagca tggctaagta gggatcaaag
     7261 tgatattcca aagcattgtc acttagtagt tttttcttaa attctttgga gatgagcttt
     7321 gttttaggat aagtgtgagc gtagcattcg agcaataaaa ttttaattgc cgatttataa
     7381 gggttattaa ttcctttgta gagctgccat aagcttgcac caaaaaattc actggttgaa
     7441 aggctggaaa aatcgccgaa atcaatccat tccgttaagt caatttcagg gttattgtga
     7501 acattttggt attcattttt atgtaaatgc aaccagagta aacgcttacc ggcaagtaaa
     7561 atagctgaac gataaaattc atctaataga aaaaaatgct gtgctgaacc actgtgttca
     7621 tcggttacgc tactgttata agtttggctc ttaaattgtt ctgggttcat taaataaata
     7681 ttgatgtcga tttggaatgt ctttgcccat tcttgcaatt tattaatttt gagctccatt
     7741 aacttatatt gttcaattgt aaaatggttc ggatagcata gccataaatc taaatcagaa
     7801 cagcttgttt gggtaatagt accggtgcta cccatcgaat aaagagcatc aaagctggga
     7861 tgggggccca aatgatcggc agagattgct tcatcaaaac ggtaagaaac cagaaattgt
     7921 ttttgataat cagagagttg aaaatgccaa atcccttgtg gtgcattttc aacataagcc
     7981 ggtaacacag ggtgattaag atgaataagc aatggaatga gagagaaaac atgcataaaa
     8041 tgatgattat tagcattgat agctcgttct attcggtatg cattaagttg atcaattcgt
     8101 gctttagtag agtttaattt ttgggcgaag ctcccctggt tcgccccaat ggcagcgcct
     8161 tctacggctg ttattttgtt ggctgtcagg gttaatgttt tcacgtcagc tttccttact
     8221 aaagtgtgaa ctgtttagca ttttagcgga aaagtgatta ttatgtaata gggtaaaaaa
     8281 tcgggaaatt aaatttcatt ccctattttg caaaaaatgt ctgaaattca accgctatct
     8341 tgatagaaag agttcagacc agtaatgaaa ttgtgtaaaa taatcaagtt ttagtagctt
     8401 atttgagtga acaagtgtaa gctgaatcaa gtatttttca gatcaaaatg atgaaggaaa
     8461 caaaatgaaa agagtcgtta ttacaggatt aggtgtaatt tccagtatcg gtaacaacaa
     8521 agaagaagtg ttggaatcac taaaagcagg taaatcaggc attgaatttg tgcctgagtt
     8581 tgctgaagtg ggtatgcgta gccaagtggc aggtacgatt aaattaaatc cggctgagtt
     8641 aattgaccgt aaaatctatc gttttatggg agatgctgcg gcttacgctt atctttcaat
     8701 gaaagaagca atcgaagact caggcttaac cgaagaacaa gtttcaaacg atcgtaccgg
     8761 tttggtgatc ggagctggta caggctcggc gcacagtcaa cttgtagctt gtgatgcagt
     8821 acgtggccca cgtggtgtga aagccgttgg gccttacgca gtaaccaaaa caatggcatc
     8881 aagtgtgtca gcatgcttgg caacacctta taaaattcgt ggtgtaaact attcaatcag
     8941 ctcagcttgt gcgacttcag cacactgtat tggacacgcg atggagttaa tccaattagg
     9001 taaacaagat gtggtgtttg caggtggtgc agaagaactt tcttgggaat gtgcaaccga
     9061 gtttgatgca atgggtgctg tttcaactaa atataatgaa acaccaacaa aagctagccg
     9121 tgcttatgat gctaatcgtg acggttttgt gattgccggt ggtggtgcag tggttgtggt
     9181 ggaagagtta gaacacgctc ttgctcgtgg tgccaaaatc tatgctgaaa ttgtgggcta
     9241 tggggcaacc tcagacggtt acgatatggt cgcgccaagt ggtgaaggtg ctgagcgttg
     9301 tatgagacag gcgatggcaa ctgtaaatgg tgaaatcgag tatattaacg tacacggcac
     9361 ttctactcca gtgggtgatg taaaagagtt aggggcgatc cgtaatgtct ttggtgataa
     9421 aacgccagca atttcatcaa ccaaatcaat gaccggacac tcattaggtg cagcaggtgc
     9481 gcacgaggca atttattcat tattaatgtt agataataat tttattgcac caagcattaa
     9541 tattgaaacc cttgatgaac aagcacaagg tatgaatatt gtgactgaac gccaagacaa
     9601 agcattaaca accgtgatgt caaacagctt cggctttggt ggtactaatg cgtgtttagt
     9661 gttccaacgc tattctaagt aacataaaaa gagcaagtga aagcttgctc ttttttcttt
     9721 tgaggtaatt attataaatt tcaaaataag ttctttgcta tttgttattt tgtcattatt
     9781 tttgaccgct tgttctacaa tgattaagcc actagatagt gtttattggc gtggtaaaga
     9841 tgtatctgaa ttttttgcac gtaaacgttt acctgataca gcggttcaat gcgtaaaaga
     9901 taatgaatta agctatgttt atggttattc aactagcttt gtataatttg caaacttatg
     9961 aagttggtcg taatgcaacc actatattta tgacaacaga taaggtttat acaggtggat
    10021 cgacttggac atatcttttt gctgacgctg ataataaaat cacttctgtt cgtgaaatga
    10081 atggttttgg tgatgtcgaa aaagagttta aatgtggtga atataaagaa gcggtaacca
    10141 ttgccagtaa agaggactta gcaaagcgta aaacacagcc tcgtttatgg tcatcaattt
    10201 atatgtcacc tgaacaaaat atgatgtggg tgactgataa tacgtctaaa aatttagaaa
    10261 atgcgaagca agatgcgttt aaacagtgtg aaaagaacgg tggtcgtaat tgccaaatga
    10321 tcttatcgtt tagtaatatg tgccttgctt ttgcacaagg ttataaagat ggtcaaggct
    10381 tcgaggattt tgggtatggt atcgttagta gtcttgctga agaaaatgca ttagagaatt
    10441 gtaatcaaaa aggtggttca agttgtcttc tttctgcccc tgccgtatgt gctattccct
    10501 gtgatatatt gtcgaacaac aaatgtatgt acgatcagcc tcaaattatt attccaggta
    10561 agaataataa ccaaccgatt aatccaccag ctaatggcaa cggtgagcat tggttgagta
    10621 attaaatcat tttagtaaaa agtgcggaaa cgcacttttt tattgcctgc aagcggtcat
    10681 ttttagtgaa aactttgcta aaaatcttgg taaataaaaa tttacaattt atttttaatt
    10741 ttatttaaaa ccatttttat attctatctt agtttttaat tcttattaaa tcatttttat
    10801 aaatgctttc tt
//
LOCUS       DANLXK010000086        10605 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.087, whole genome shotgun sequence.
ACCESSION   DANLXK010000086 DANLXK010000000
VERSION     DANLXK010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10605
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(14..673)
                     /locus_tag="PXD88_001828"
     CDS             complement(14..673)
                     /locus_tag="PXD88_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL6281382.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            803..1009
                     /locus_tag="PXD88_001829"
     CDS             803..1009
                     /locus_tag="PXD88_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6281383.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            1030..1290
                     /locus_tag="PXD88_001830"
     CDS             1030..1290
                     /locus_tag="PXD88_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281384.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            1454..1624
                     /locus_tag="PXD88_001831"
     CDS             1454..1624
                     /locus_tag="PXD88_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281385.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            1599..2468
                     /locus_tag="PXD88_001832"
     CDS             1599..2468
                     /locus_tag="PXD88_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL6281386.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            2465..3826
                     /locus_tag="PXD88_001833"
     CDS             2465..3826
                     /locus_tag="PXD88_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL6281387.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            3823..4359
                     /locus_tag="PXD88_001834"
     CDS             3823..4359
                     /locus_tag="PXD88_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL6281388.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            4450..4665
                     /locus_tag="PXD88_001835"
     CDS             4450..4665
                     /locus_tag="PXD88_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281389.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            4649..5155
                     /locus_tag="PXD88_001836"
     CDS             4649..5155
                     /locus_tag="PXD88_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL6281390.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQLYSFF"
     gene            5205..5417
                     /locus_tag="PXD88_001837"
     CDS             5205..5417
                     /locus_tag="PXD88_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281391.1"
                     /translation="MKKNVIRYWLSVPFRIIAVLFFLVILTVRYVGYLLIYPLAFFAA
                     VGSFIVFCQWTYQEWLYYFKRGFAPI"
     gene            5463..5657
                     /locus_tag="PXD88_001838"
     CDS             5463..5657
                     /locus_tag="PXD88_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281392.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
     gene            5785..6354
                     /locus_tag="PXD88_001839"
     CDS             5785..6354
                     /locus_tag="PXD88_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL6281393.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            6344..6817
                     /locus_tag="PXD88_001840"
     CDS             6344..6817
                     /locus_tag="PXD88_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281394.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            7045..7120
                     /locus_tag="PXD88_001841"
     tRNA            7045..7120
                     /locus_tag="PXD88_001841"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7078..7080,aa:Trp,seq:cca)
     gene            7137..7322
                     /locus_tag="PXD88_001842"
     CDS             7137..7322
                     /locus_tag="PXD88_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281395.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            7348..7518
                     /locus_tag="PXD88_001843"
     CDS             7348..7518
                     /locus_tag="PXD88_001843"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281396.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            7661..7906
                     /locus_tag="PXD88_001844"
     CDS             7661..7906
                     /locus_tag="PXD88_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281397.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
     gene            7899..8468
                     /locus_tag="PXD88_001845"
     CDS             7899..8468
                     /locus_tag="PXD88_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL6281398.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            8441..8791
                     /locus_tag="PXD88_001846"
     CDS             8441..8791
                     /locus_tag="PXD88_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL6281399.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            8796..8969
                     /locus_tag="PXD88_001847"
     CDS             8796..8969
                     /locus_tag="PXD88_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281400.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            9361..9885
                     /locus_tag="PXD88_001848"
     CDS             9361..9885
                     /locus_tag="PXD88_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL6281401.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            9869..>10605
                     /locus_tag="PXD88_001849"
     CDS             9869..>10605
                     /locus_tag="PXD88_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL6281402.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAY
                     LEASEAQIFRGKYQEMEFVPNPDFDGP"
BASE COUNT         3423 a         1793 c         2468 g         2921 t
ORIGIN      
        1 gctttggtgg actttacaaa tagcttctat gctcaacagc gacaccaata atacgaatat
       61 cttgtttcat tgagctgagt gttggaaagt cggggttaag cggtattagc tcaaaatgag
      121 gattgccgga ttcagaccat tcgcctaact cccgataacg ttttaaagta gcctcacctg
      181 tgccattaac cgctgctaca taatcgcccg ggtgaggacg tttgcgaata tcgattaaca
      241 ccagatcgcc ttcactaaat ttaggctcca tcgacattcc ggaaattctt aaaaagaaag
      301 cgtccggtcc ggcatcaatt tccgtatcga tatagtcgta gccctccgaa tctttgaaat
      361 caaaggcttc tgtccataaa cccgcttgta tattgctgat caacggatat gagttcgatt
      421 ttgtcggtct ggcaagctga acgtttgtat caaaagcaag tgtttctgga gaaacaccaa
      481 gcactttgct gagtatttca atatcatcaa gatcgggagt acgattgttt ctctcataat
      541 tagcaatgcg agattgcccc catttgttat ttttatctcg attatctatt gatgtacatc
      601 tttcagcaac ttcatattgg ctgattccta gctgttctct gtaagcctta attctactac
      661 ctaaggttgt catagcactc tcctattaga ttttcctcat tttaacacgc tccgttatat
      721 ccttgtgaat cacaaaatga aatttacaat tagttcattt tgtgatttaa ttaaaagata
      781 taaatcacaa agagaaattt gtatgaataa gatagctgaa atacgaaacc aaattggtat
      841 aagtcaagct cagttagctg ttcagattgg ttgggggcaa ccaagaatag ctaactatga
      901 aactggaaat cgtaccccat ctatttacgt tgctcaaaaa attgttgagg gattgaacga
      961 attaggtgca aacgtacgaa ttgatgacgt tttccccgtt ggcaactaat ttaccccaag
     1021 aggcttgcaa tgccacgcaa tgaattaaca aaaaatgcaa gagcgattgc ggatttgatt
     1081 catcgaaaat ccgcaacggt gacgcataag aaactagcaa gagcaatcgg actgagtgaa
     1141 tcacaattta gccgtacatt tgcagataat gtggaaatgg tggcggtgat tattgattac
     1201 ttaagtattg agcttgcgga taaagacgag ttactagagc tgaaagagaa acgatataag
     1261 cgaataaatc tcgaagaagc gacaacatag aagttaccaa caatgaaaaa ttttttagaa
     1321 aaattcaaat cattctacca cagtaaaaat tcaattttta ttagagtggc aatttttatg
     1381 ctgcttgcgt ggtgggtttt taacaattaa aaaaccaccg ctggaacggt ggtaatttac
     1441 aaggagttac cttttgaaaa atcaacgcaa tgatacacaa aaaagctcct tatggcaaga
     1501 gtttgaatat cgaaaacggt taaaaaatct cattgaaagc ggtttatccg tagccgaaat
     1561 tgaaacccgt tcacaacaaa tttatgagga gctgaaaagt gaatgcacaa ccgaagcaaa
     1621 ttaacccaat tttaaaattg caccctaaac aatcagaggc taagaaagtg agtgttgatg
     1681 atggttatac acaaattccg aatgagttat taaaagcaat tttgcgatcg ggtgttttag
     1741 gttggaaagg ctcttactta ctggctaccg tcttaaaaac attgtcttgg cataaagaaa
     1801 gtgattggtt cacgcattcc caagtgtgtg aaatgatgaa tattgagccg acaaaatacc
     1861 atattaatca actttccgct gctcgaaaag aacttatccg tgaaaatatc ttgtttgaag
     1921 atggtaagga aacaggggta aatctcagtg tttttgaatg gaaaatggta tatcccgaaa
     1981 aagtagggag ttcccgaaat aatagggaat taattcccga aaaagtaggg aatgggtatc
     2041 ccgaaaaagt agggaacaca aaagaaacta ttacaaaaga aaaaataaat aatgaattta
     2101 ctaacgtaaa ttctgtgcaa cagcccgaga cctctttgcc gaaaaaaaca aaatctgagc
     2161 cggtcgatta tcaaggagtg atggaagaat ttaatcgtgc tgtggaagac acaccgattc
     2221 cgcaaattcg ggcgatgagt gatgagcgaa agcgatcggt tcacgcatta gcaaaaatct
     2281 tgcgaaaaga atttggtggc tacaccagac aacactttgc cgattacttc aatgattttg
     2341 tccgacaggc aagtagccgg aaagacagat tttattttgg cgggcttgat ggctcggctt
     2401 gggtagcaaa tttcggctac atcattcgtt cgaaaacgtt ttataagact tgggaagatt
     2461 cgctatgagc caaaatttga aaaatatcac ttacgaggtt gaatatttgc tggttggagc
     2521 attgctgaaa tccggtctta actcgaaagc tagggacgta ttgagctggt tagagcctga
     2581 aatgttcgct acctttcaac ttggggtgat ttatgaggct atccgcaagc aggcgttgaa
     2641 agataacgtg atcgatatgc tgttactcaa taccgactac ggacaagatt ttgccacgtt
     2701 ggcagagata atgaaaaaca cgatcagcgg tgcaaactta gacggctatg cagaaaaagt
     2761 ccggcaatat catcaacgcc gagaagccca gcgagtgttt ttagacgttg caggtgagtt
     2821 gcaaaatgcc cgagacgagc agttagatgc tatcacttca accgggttag ctcacctaag
     2881 caaattatta caacgtggcg gaaaagtgaa accgattgat atgaatgatt tgctcgaagg
     2941 ttatttggaa ttgttccaag aacgtgcaaa accaagtttt aaagagcgtt tgttgtttac
     3001 cggtatagaa gcattagatg ggaaactagg cggtattaac gataccgata tttgcattgt
     3061 agcaggacgt gccggtaacg gtaaaaccga aacagccatc acgtttacta aaaacattat
     3121 cgagaataaa ggttcggtgc tgttcttctc gctggagatg agcaaagagc agattatgga
     3181 taggctgatt gccagtgcaa gcggtgtaaa ttcagtaaaa cttcgcaatc cggaaatgat
     3241 gaatgatgaa gattttgccc gaatgggaac ggcgattcag cctttacaaa atcagcagtt
     3301 gtacattgtt gataaaagcg gattaaccgc agaagagatt gtggcgattg cagagagcca
     3361 tattcaagag tacggcaaag tgagtgcggt agtgattgat tatatcggtt tggttcgaca
     3421 cggcaaacta gacggcaaaa ttaaccgaac ctatcaaatc ggtgaaagta tggagcggtt
     3481 taaaactttc tgcaaaaaca atcacacacc gatgatttta ttggcacagc ttaaccgcaa
     3541 tgcagatggc agtcgcccaa ccaacgcaga tttgcgagac agtggcagtc ttgaacaaga
     3601 tgcaagccaa atcattatgg tgcataacca acgcaacaaa gacggcgagc cagcccccta
     3661 tacagaatgg attgttacta aaaatcgctt tggagcaaat ggcacggttt atatgcaatt
     3721 ccagcagggt aggttcgtag aatgcgacca ggcagaagcg cgggagtatt tccagccgaa
     3781 agaaactaaa acatcatcaa acaaacgcta tggagcaatg caatgacaga ttttgataaa
     3841 aatataaaat acaaaattat ttacgcagat ccgccttgga agtataagga tagtggctgt
     3901 aatgggagtg cagaaaacca ttacacaaca atgaatatca aagaaatatg tgatttaccc
     3961 gtccaagata tttcagacaa agattctatt ctgtttttgt gggttactta ccctatgtta
     4021 cctgagggct taaagttgat tgaggcgtgg gggttcaact ataaaacaat agggtttcaa
     4081 tgggtgaaga caaataagaa gaataagaat tcttttttct ttggcttggg acgatggact
     4141 agaggtaata ccgaatgctg tttaattgca acaaaaggaa agccatcgag ggtaagcaat
     4201 aaagtgagcc aattaattat tgagccaata caacatcata gtaaaaagcc tgacattgtc
     4261 agagaaaaga tagttgagtt gatgggtgac ttgccaagaa tagagttgtt cgccagaaat
     4321 aaaacccaag gttgggatgt ttggggggat gaggtgtgat tgtttcaagc tattgttacc
     4381 caaagtgcgg tagggtttta ttaaaaaggt tggcggttgt gaaggataac gaaggttggg
     4441 acggtttaga tgattactta taaatgcccc aaatgcaacg gagagcttga agatttaagt
     4501 attaatgatg aatggggttg gtttttagat gagccgtatc gttgcaacgg acactataca
     4561 gggcggtttc caaacattag ccgagatagc acgttaaatc gcacaaaatc ctgtgggtac
     4621 tttagcaagg aagaggttaa gaaagtaaat ggcacacagc gttaatgaca tcgtaaaagc
     4681 ccacggcagg cgttataaag caagattgaa aatacagatg ataaaaatgc aaggaggcgt
     4741 tttagtcccc cttaatgagc gtgaagctga agcattggta tcacttaaaa atggcgagca
     4801 atatgaaatt gaggttattc gcactcgcaa tccagccttt catcggaagg tcttcgcctt
     4861 tttaaatttt tgctttgaat attggtcggc agacaaaacc gaatgggagt tttttgatga
     4921 gaggaaacag tttgatactt tccgaaaaaa tctgactgtt ctggcaggat ttaaagaaat
     4981 cacatacacc ctagatgggc gtatgcgtgt agaagctcaa agtcttagtt acggaaatat
     5041 ggaacaagac gagttcgagc aggtttacaa agcattgatt aatgcagcta tcaagcacgt
     5101 tttcaacaat accaaagatg agaataggat aaatcagttg tattcgtttt tttaattaag
     5161 gcgaaatcgc catatttaat taggtttaat tgcaggagat taaaatgaaa aagaatgtta
     5221 ttagatattg gcttagcgtg ccattcagaa ttattgcagt gctttttttc ttagtcattc
     5281 ttactgttag atatgtaggt tatttattga tttatccatt agcattcttt gcagcagtcg
     5341 gtagttttat tgttttctgt caatggacat atcaagaatg gctttattat tttaagcgcg
     5401 gttttgctcc gatttagtgt gtgtttatta attccctcga attcggggga aggagaagta
     5461 agatgacaaa attttttgaa actatcgcat tcgtgatgtt atttggcatt attccaagct
     5521 gtttgttggc gattaatact actttaatga atatgaatat taaaaacgca ccgtggttta
     5581 tggtgattat tcagttaggt tttaatatca cttgttattg gttgtggttt atttctgtta
     5641 tgcggaatgt tatttaagga gattaataag tgagccagtg caatgaactg actgtaattt
     5701 taatcgccat cgctattctt agtgtatgtg ccggttcact cttttttatt gagtggtttg
     5761 ataagagaga tggtgagggt tggaatggct aacaaaccac ctaaacaaca caaatgcaaa
     5821 gagtgcggca gttattacat caaatttcaa agcacgcagc aggtctgctc tgttaagtgt
     5881 gctatggcaa tgggtaagcg taagacagag gcgaaacgca aaaaaagtgc aaaaatcgac
     5941 cgcttggagc aacggaagcg gctggaaaaa ttgaaaagcc gtagagattt tgagaaagat
     6001 ttacaaaaga tatttaataa attcattcgc ttgcgtgata aagatttacc ctgtatttcc
     6061 tgtggccgct atcatcaggg gaaatatgat gcagggcatt ataaaaccgt tggtggtaat
     6121 cctgagctac gttttaatga agataattgc cacagtcaat gtgtgccgtg taaccgacat
     6181 ctgcacggca atattgtgaa ttatcgagta aatctgattg agaaaatcgg gcttgagcgt
     6241 gtggaatttt tagagcgtaa agaccaccca ccattaaaac ttactatcga acaaatcaaa
     6301 gatttaatca aagtctataa agcgaagtgc aaggagcttg agcgtgttac ctagaaaaat
     6361 taaaaacaag tggttagagc ctgaaaagca gaaatggatc gaagagttgc taaggttatg
     6421 gggggcgtgg gaatttggcg gattggattt agaaagtcgg gtaaatatga tttaccggct
     6481 gatgaaatct gcggaggggg ttaaaagtct ttcatctaga gaggtttgta acgatagcct
     6541 cggcacgctg atcaatgaga tttttacggt agtcaccaaa agagacgtaa tgttagccga
     6601 tatactcaaa caaaaatact ggttcgggcg ttcggagcgg caaatcgcta tttattatca
     6661 actaagggac agcgagggta gaaaagaaag acgatggcaa gaaattattc aagataaatg
     6721 caaaaaagcg gaaagaatta ttgcagatat tcttgaaagc aagatttcat ccagtaattc
     6781 tacagataaa ctgaaaaaat atcaattttc cccttgattt tagtgcgtaa caagtgtata
     6841 ttttgtgcta atggtggacg tagtataaat gatgtttacc aatgttagtt aaagacgcag
     6901 cctgaagtaa tattcagttc ggaggagaat aactagaaac gacgtcgagt atagttattt
     6961 cagcgtttgc gtggcagtat gccgaccgaa ttagtttaac agccctgagc agaaatgctt
     7021 ggggcttttt tgtttacgga ttttaagggt gtagctcagt tggtagagca gcggtctcca
     7081 aaatcgttgg ttgttggttt gagtccaacc accctttcca aatgcgagta aatgttatgt
     7141 ataaccttga tgatgcaatt caagaatgca gagaaaaatt tggtgaagat aagccttatt
     7201 tttctgaagc tggaacactt acttttgctg gttgcaaagc cctctctcga ttaagagatg
     7261 aaaagttagg aattaaggct ccgccaaatt tccctttccc aagggttgaa gatctatctt
     7321 agctacaaaa atcaatgagg gattgctatg acggaacaac taaatactca gtcaaaaagc
     7381 ggtgaagaag atcaagaaaa atctcaagat cgctatgccg tgggctggcc atctcgacgt
     7441 atatcagatt gcgttcagca cttccgaagt aggaaaattt atccatttgc cagtaataat
     7501 gacgtgaagc aaggttaaat gcttctggtg gtacagagta aattcaatca tttttaccct
     7561 ctgctagttt atttgttggg gaacagtatt ctagcagaat ttttaaccaa agctcagtct
     7621 cacgactggg cttttttatt gcctcgaaac ggggtggagt atgaagttaa tgaaagatat
     7681 gggaacgcag agctatattt ggtcgggatt tagcacttgg ctggcgtggc tcggcgaaca
     7741 gcagaattta atgttactta gtcttgctat cggtattgtt actgccattg cagggcttat
     7801 tcagcgattt gatgaatggc gtaggcgtaa gcgtgaagat gagcgagcgg aagagcttca
     7861 tcaagcgaaa atggcaagat tgagaaaggg gttaagtgat gagtaaaagc cttaaatatg
     7921 gcagtggtat cgtttgtggt atcgctgcca ttattacatt agtccaatat caacatcccg
     7981 aaatccgcac taaccaagct ggattagaga ttatcggtaa tgctgagggt tgcagacgtg
     8041 atccgtataa atgccctgcc gatgtaatca cggttggcat tggctcaacg gagtttggcg
     8101 gtgaaaagat tgacccaaat cgtatttatt ctgacaaaga aattgctgag cgttgggcaa
     8161 aagatttgaa gattgcggag agttgtgtca atcgtcattt taatggtaaa gacatgaacg
     8221 ataatcaatt ttcgggaatg acgtccgctg tatttaatat gggttgttat aacatgagat
     8281 tttatcggaa taaacaaggt caatatgtgc agactaccat ccataaactc gcagtgaata
     8341 aacaatttga ggagatgtgt catcgactac ctgactttat tcgtgccagt ggtaaggtat
     8401 tgaacggatt ggttatccgc cgtgaaaagg agaaagcatt atgcttaact ggattagtgg
     8461 cacgatagcc attgtgattt tgggcttgtg tgtatggtta tggggtcagt cacagatgat
     8521 agatagctta agagctgaga accgcgcaca agcccaaacc attgagcagc agcaaaaagc
     8581 caatcaacgg ctaaccgata gcttagagca agagcgacaa gcggtcgaaa aaatccaaaa
     8641 aattgcaaat gagctgcgga ataaagtgga gatggccaag aatgaaatta catcaatact
     8701 ggcacaagac agttgtgcta aagctgattt gcctaatggc gttgctgata gcattaagcg
     8761 gctgcaccag cagaacaatc acaagcactg agtatttgta tccgccggca gcttaccttg
     8821 tgccgtgtgg gcgaacagaa tttagcggta gaacctatgg cgatacggtt gagtatctcg
     8881 tcaaagtgat gggagagcgt gatttgtgtg ctaatcaaat tgaccgtatc agagaatggc
     8941 aagcacaaac caaacaaggg tttaaatagc taattatcta attaaccgct attgaaaatg
     9001 ggagcgtaac agctcccttt ttgttttgat ggaaagtaaa tattacataa tttagctatg
     9061 gtttcggggt tggttggata aaacaccgag gaaataccta agtgatgtga tttatataaa
     9121 acaaaacccc gaacatttgc ggtgttcgag gtttttttat tacccattga aacggaatga
     9181 gtaacaagtt atggaaatta ttacattttt aaccgtaacc atcaaggaga ttcttatgga
     9241 atatggttta tggcaaataa gcctagcagt aacagtccct attttggcgt tcgtgtcgcc
     9301 aaagctgatt aatgctattg ctaatctatt aaatgcaatg aagtaaagga atttaaccca
     9361 atgactaaaa aaggcgaggt taaagccacg tctaaaggcg tgggtaaatt aaccgataaa
     9421 cagaaacgat ttgtagaaga gtatctgatt gacttgaatg cgactcaagc tgcgattaga
     9481 gctgggtaca gcgaaaaaac agcatactca atcggagaag agaacctgag aaaacctgaa
     9541 atcagaagtg caattcagga ggctcaaaat aaacgctcgg agagaaccca aattacacaa
     9601 gatgatgtgc taaatgggtt gcttgaagtg attgcaatga gtactggtaa aaaaattgtg
     9661 acagaaactg atgttgcaaa aaatgacaat ggtgagttgg tcggttttga tattgcaaaa
     9721 acaaaattcg aacctgccgc cgcaaataaa gctcttgagt tactcggtaa acatttagga
     9781 atgtttaaag acaaggttga tttaattaat tctgatggtt cactgaatcg accgatggtg
     9841 attgaattaa ttgctccgag tttagacgat gaaagcacag attgaactac cacctaaact
     9901 gttgcctgtt tttgccaaag attatcgtta caaaggtgct tatggtgggc gaggttcagg
     9961 caagactcgg gcatttgcca aaatgtcggc agtgtctgct tataaaagag caatgcgagg
    10021 ggaaagtggc gttattcttt gcggtcgtga gtttatgaac tcattggaag aaagctctct
    10081 tgaagaagtt aaacaggcga tcaagtctga gcctttttta gcaaattttt ttgatgtcgg
    10141 cgagaagtat gttcgcacta aagatgggcg gatttcttat gtgttttccg gacttcggca
    10201 taacttagat agcatcaaat ctaaagcccg tattttgatt gcgtggatag atgaagcaga
    10261 aacagtaagc gaaactgctt ggcggaaatt aattccaacc gtgcgtgaga ataattccga
    10321 aatatgggta acttggaacc cggaaaatag agggagcgca acagatactc gcttcaggca
    10381 aaatccacct gaaaacagct gcataattga aatgagctac caagataatc cttggtttcc
    10441 tgatgtgctc gagcaagagc ggctaaatga caaacagcgg cttgatgatg cgacttatcg
    10501 ctggatttgg gaaggtgctt atttggaagc gagcgaagcg caaatctttc gcggtaaata
    10561 tcaagaaatg gaatttgtgc cgaaccctga ttttgatggc ccata
//
LOCUS       DANLXK010000087        10483 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.088, whole genome shotgun sequence.
ACCESSION   DANLXK010000087 DANLXK010000000
VERSION     DANLXK010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10483
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(52..1899)
                     /gene="selB"
                     /locus_tag="PXD88_001850"
     CDS             complement(52..1899)
                     /gene="selB"
                     /locus_tag="PXD88_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL6281403.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(1909..2205)
                     /locus_tag="PXD88_001851"
     CDS             complement(1909..2205)
                     /locus_tag="PXD88_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6281404.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(2202..2378)
                     /locus_tag="PXD88_001852"
     CDS             complement(2202..2378)
                     /locus_tag="PXD88_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281405.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(2447..3079)
                     /gene="pdxH"
                     /locus_tag="PXD88_001853"
     CDS             complement(2447..3079)
                     /gene="pdxH"
                     /locus_tag="PXD88_001853"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL6281406.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(3137..4519)
                     /locus_tag="PXD88_001854"
     CDS             complement(3137..4519)
                     /locus_tag="PXD88_001854"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL6281407.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            4587..4681
                     /locus_tag="PXD88_001855"
     tRNA            4587..4681
                     /locus_tag="PXD88_001855"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4621..4623,aa:Sec,seq:tca)
     gene            4888..5577
                     /locus_tag="PXD88_001856"
     CDS             4888..5577
                     /locus_tag="PXD88_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL6281408.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            5587..6489
                     /locus_tag="PXD88_001857"
     CDS             5587..6489
                     /locus_tag="PXD88_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL6281409.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            6514..7392
                     /gene="nanA"
                     /locus_tag="PXD88_001858"
     CDS             6514..7392
                     /gene="nanA"
                     /locus_tag="PXD88_001858"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL6281410.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(7453..7659)
                     /locus_tag="PXD88_001859"
     CDS             complement(7453..7659)
                     /locus_tag="PXD88_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281411.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(7617..8255)
                     /locus_tag="PXD88_001860"
     CDS             complement(7617..8255)
                     /locus_tag="PXD88_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281412.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(8497..9216)
                     /locus_tag="PXD88_001861"
     CDS             complement(8497..9216)
                     /locus_tag="PXD88_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6281413.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            9393..9671
                     /locus_tag="PXD88_001862"
     CDS             9393..9671
                     /locus_tag="PXD88_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281414.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            9716..>10483
                     /locus_tag="PXD88_001863"
     CDS             9716..>10483
                     /locus_tag="PXD88_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6281415.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT         2987 a         2232 c         2197 g         3067 t
ORIGIN      
        1 attagtaaat ttattttttc gcataaaaaa atctatgcct aatgccacaa gctaaaatgt
       61 ttcactatct cttaacaaat gcacatcgcc ttttcgtctt aaaaaaccgc tacgatcaaa
      121 atattcaatt aattgtaccg tcaattttcg cccatactgc aactcatctc gcaactggtt
      181 caccgaaatg ctgccgtttt gggcgataaa atctttaatt aacgttgcaa attgcccgat
      241 ttgttcgctt aataaaaatc tatctttgac gattgggatt aaatagccca atttcccgac
      301 tttatacagc aaattccgca tttgggtttc atcaatcgag agctggcttg caatatccct
      361 cacccaaaga gcttgattgg ttgcctcaaa cagcggtcga atttgttgcc aaatttgcaa
      421 ttcatcggcg ttcaattcga ttcgatgttc cggcaaatgt aaccaaccac gactattgac
      481 caaggctttt tgctccacca aatcctcaat aaattgattt gccaagtttt caggcaaatc
      541 caataacgct atgcgatata aacgagcttt ggtcacgccg atttgatctt gatgttgcag
      601 gtggtattct gccatttttt ccaacacccg ttgctgggct tgagctttaa aatccgaatt
      661 aaataaccat ttagacgaga catcaaaccc cagttttgca atatcctctg caaaacattg
      721 ctccgcccat aacagcaagg ataaatccat cgctctgttt tgcagataga gatcaaggcg
      781 tgtcgcaaag tcattacaag cggtggtttt tgctaaattt tttaccaaag ctaaacgggc
      841 ttcggtacgt ttatgccgtt ttggtgagtg aatttccagc acctccgctc cggctaacgt
      901 taggctgtca tcaccgctgc ggatgatcaa cttatcacca acggcaatat gaagtggttc
      961 atctaaaatc acttctgcaa aaaattgctg atttttgacc gcttgttgcc cctcaagcaa
     1021 attcaatttg ccggtaatgt gcgaagcaaa atggtaaaga tgcacaatgc tgttttcttt
     1081 gaaggcttga ttggcagtga gttgaaccgt aatgcgatcg gtggcaaatt tcggctcaag
     1141 ctcggtaatc caatcgcctc gcttgatttc ctctttttcc acgttagcga tatttaacgc
     1201 caaacgttgc cctgccactc ccgtttccga aggcgtattt tgggcgtgaa tcgctttgac
     1261 ccgcactttt ttaccattcg acaaaaataa ctcagagcca acgctcactt ttcccgccac
     1321 cgttgtgccg gtaacgacca accctgctcc tttcacatta aacacacggt caatcgcata
     1381 acggaacggt ttatgggttt gggtatgttg ttgatttaat tgaattaaat gtgcttttaa
     1441 ttcttcaatc ccttgttgcg tttttgccga agtaacaaag gtttttgctt ccgctaaaaa
     1501 cggatagctt gttttcactt gctcaattaa gtggctgatt tgagtttctt ccgcccgatc
     1561 tgccttagta atcacaatca taatatgctg gaaattcagc aggtggagaa tatccaaatg
     1621 ctcttcggtt tgtggcttaa tcccttcttc ggcagaaatc accaacaggg cgtgttgaat
     1681 gccgccaagc cctgccagca tattagataa aaaacgctga tgacccggca catcaataaa
     1741 ccctaaaata tcgttctcaa tcggtaaata ggcatagccc aaatcaatgg ttagcccacg
     1801 tttttgttct tcgggcaaat gggcggtgtt agtgccggtt aaggcttgta aaagcgatgt
     1861 tttgccgtgg tcaacgtgac cggcggtgca gatgatcatt gatagtcctt ataaaaatga
     1921 gtaactattc tggcgagcag atttaaaatc tacaatatag acattttcct gaccaatcag
     1981 gaactttact tggtacttac cgtttaaaat gggaatttct tttttcttgc gaagtcgata
     2041 aacatcggca gtaaaggaaa gtttatccac ttcacttttt attgcatcat aaaattgttc
     2101 tgcaataatc gggttttggg attgttgtaa tatataatct gcttgataaa acaattttat
     2161 ttctgctttc tgtagccaaa caatattgta atcaaacttc atcatttttc cgtgattccc
     2221 aattttttgc gtaaatcttc catcacctga gcgtgggatt tagtttcaat taagccattt
     2281 tctaattgat gtaataaatc aagttcatca ttagtataaa aactttgtgg cttatctgtg
     2341 cgtaattttg ctaaatcttg tgcgagtatg agttccatat ttccccctta caaacttaga
     2401 ttattcaata ttgtaacctg ataaaactaa agttcaagga gtgtatttaa ggcgataacc
     2461 gctctttttt ccactcatta ttttccaacc aataatgaat gcggtcgtgt agccggctac
     2521 ttctgccttg ccagagttca atactgtcgg gaatcagaat atagccaccc caatgcggtg
     2581 ggcgaggcac tgaaagtgga tatttcaatg caaattgagc tgattttagc aacaaagcct
     2641 tgtagttttc gataggctga ctctgctcgc tcgcccaagc ccccaaacgg ctggtgtaag
     2701 gacgagagtc aaaataggca tcggattctg cctctggaat ttttgctatt ttcccttcaa
     2761 tccgcacttg acgttgtaat tctgcccaaa agaaggttaa acatccaaaa ggattatcgg
     2821 caatttccca ccctttacgg ctttgataat tggtaaagaa cacaaagcct tgtgaattta
     2881 cctctttcaa cagcaccatt cggctacttg gtcgcccgtt tgctgcaacg gtagcaatat
     2941 tcattgctgt cggctcattc actttggcat tgattgcctc actcaaccat tgttcaaatt
     3001 gggtgattgg gtttgagtga caatctcgga ttgaaagcac ttttttggtg taatcttctc
     3061 gaatgtggtg cagatccata aggattcctt tatcttattc taaataatcg gacaggcaca
     3121 gtctgcccta ccaaaattaa tattccaaca tctcaatcaa cttatcaaac tccgcgaccg
     3181 agcgtaaatc taaccaaaat ttctgctgag caaaacgccc gataatcggg cttgggtagg
     3241 ttttaaattg ttgttccaat gcaattaaat cgctctgttt ttcagcggaa atagtcactg
     3301 ccaccgaagg taaggtttct gtgggtaacg caccgctgcc gatttgagcg aggcttagct
     3361 caatttgcaa aatataagca gaatttaacc gcttgtgtag tgcctgtttt aatcgctctg
     3421 ctttgtgttg caaggtttca agcggttgag tgagtaaatg aagagtcggc aagttatcgg
     3481 ttaattgctc cggaaataag tagtggcgta gcgttgcctc aagtgccgat aaaatcactt
     3541 tatcgcaacg tagcacccgt tttagcgggt gttgttgcag ttggctaatc atcgcttggc
     3601 taccgacaat aatgccggct tgcggcccgc ctaataattt atcgccagag aaggaaacca
     3661 aatctacccc agccgctact ttttgctgaa cctttggctc agcaggcaaa ttaagagctt
     3721 gcatatcagt tagcgaacca ctgcctaagt cggtaatcac aggcaggtta aactctttac
     3781 cgagagccac caattcctct tccgacaccg aactggtgaa cccctcaatg tggtagttac
     3841 tggtgtgaac tttcattaaa aaggcggtat tttcggtgat cgcgttgcga taatccttta
     3901 aatgagtgcg attagtcgta ccaacttcca ccaatttgca accggcttga gccataatat
     3961 ccggaatgcg gaatgccccg ccaatttcca ccagctcgcc acgggaaacg atgacttcct
     4021 tgccttgtgc gaaggttgct aacatcaaca acaccgctgc cgcattatta ttcacaatgc
     4081 aagcggcctc cgctccggta agtatttgca acaactcgga aatgtagtta tctcggtgcg
     4141 agcgcttgcc tgcttcaata tcaaattcca acgccacatt gtttcgcatt gcgttggttg
     4201 ctgcctgtat cgccttttcc gaccacaacc cacgccctaa gttggtgtgt aacaccgtac
     4261 cggttaagtt gaacacggaa cggattttca cctcactcaa cgcttgcact ttttgttcca
     4321 gccttataaa aaacaggttt tcatcggcaa taaaatccgg caaggcttgc tgttgggaaa
     4381 taaattgacg tgcttgagta agcaaactcc tagcttgttc agccacgctg gaatatgcaa
     4441 atttttggca taattcgacc gcttgtggct ttttcaacaa gaggtcgagc gagggaattt
     4501 ggcgaaatag ttgttgcata atgtgaatga ttgagagaat attttggaca attctaataa
     4561 ataaagtaca atattgccaa tttttcggaa gtgcgtcatc tccggtgagg tggcaggact
     4621 tcaaatcctg ttgaggacgc cagcgttctc gggtgggttc aactcccatg cacttccgcc
     4681 acatttcaaa agccgttaat ctttaacggc tttttgcatt tctgccacat tctctctttc
     4741 cgttttgata aaaaatgaga cttagctcac atttttttat ttttctgttt gtagtaaaaa
     4801 tttattaaat tataattatt tggagtattt tttcacaaac aaaatctagt ccattgacta
     4861 ccttttgaac ataaaaaagg aactgttatg tcaacactat ctcgtgattc tattttaagt
     4921 caaattcaaa acgggctgat tgcctcctgc caaccggttg atgacggccc catggataaa
     4981 cctgaaattg tcgccgcaat ggcagcagcc tctgtgattg gtggtgctaa aggcattcgc
     5041 attgaaggtg tcgataattt aaaagccgct cgtgcggcag tgaatgtgcc gattatcggc
     5101 attgtaaaac gtgatttgcc agattcccct gtgcgtatta cgccattttt agaagatatt
     5161 gatgccttag ccgaagccgg tgccgatatt attgcggtgg acggcacatt ccgcacccgc
     5221 ccggtcagca ttgaagaggc ggtaaaacgc attcacgaaa aaggttgctt ggcaatggcg
     5281 gattgctcca cccttgaaga aggtttacat tgccaacaat taggctttga tattgtgggt
     5341 agtacaatgt ctggctacac cggtggcgaa atgcctgatg agccggacta tcaattagtg
     5401 aaagatttaa aagctgccgg ctgtaatgtt atggcggaag gtcgctacaa cacgcctgaa
     5461 ctggcaaaaa cggcgattga aatcggggcg gattacgtta ccgttggatc ggcattgacc
     5521 cgcttagagc atattgtgag ctggtttgcc gactctgtaa aatcggctca aaaataggag
     5581 ctgcttatgc gttgtttagc aatagacatc ggtggcacga aaattgccac ggcaattgtg
     5641 caacacaatc aagtgtcaca acgccaacaa attcagaccc cgactgataa accacaagct
     5701 gatcaggcag gcagtttgca tcaagcgatt ggtgagataa tgcaacatta tcaagggcaa
     5761 tttgattttg tggcagttgc ctcaacaggc attatcaata aaggggtgct taccgcatta
     5821 aatcctaaaa atttaggcgg attggcagaa tttccgttga aacaaagcat tgaaaaacat
     5881 accgataagc cgattgcatt attaaatgac gtgcaagcgg cggtgtgtgc cgaatattta
     5941 aatgaagacc aacaagcggt caaaaatttt gtatttatta ccgtttccac cggcgtaggc
     6001 ggcggcatta ttttaaacgg cgaactgcaa atcggcagta acggcattgc aggacatatc
     6061 gggcatactc tagccgatcc gaacgggcct ctctgtggtt gtggacgagt cggctgtgtc
     6121 gaagcagtcg cagcagggcg tgcaatagag gcagtttcca gccaatggga aaagccttgt
     6181 tcaccgaaag aggtgttcga gcgattccgc caaggcaacc cacaagcggt cgaattagta
     6241 caaaaatctg caaaagcgat tgctaattta attgcagatt taaaaatcag tttagatata
     6301 caaaaagtgg tgttaggtgg cagtgtgggc ttagcggaag ggtatttacc gcaggtgtcc
     6361 aactatttag ctgaaatgcc gagcgtatat cattgcgtat tggaaaatgc tctatccggg
     6421 caagatgccg gcttaatcgg tgcggcttgg tgggcggaaa accaacttaa tcaaggtttt
     6481 actctttaac aaattctaac tccggagatc caaatgaaaa acttaaaagg tatttttagt
     6541 gcgttactcg tctctttcaa cgaagacggc accatcaacg aaaaaggctt acgccaaatt
     6601 atccgccaca acatcgacaa aatgaaagtg gacggtttat atgtcggcgg ttcaaccggt
     6661 gaaaacttta tgctttctac cgaagagaaa aaagaaattt tccgcattgc caaagacgaa
     6721 gcgaaagatg aaatcgccct tatcgcccaa gtcggtagcg taaacttaaa agaggcggta
     6781 gaactgggta aatatgccac agaattaggc tacgacagct tatctgcggt cacaccgttc
     6841 tactacaaat tcagcttccc ggaaatcaaa aatttctacg aaaccattat tcgtgaaacc
     6901 ggcaacaaaa tgattgttta ctccattccg ttcttaaccg gcgtaaacat cggtgtgagc
     6961 caattcgctg aattatttga aaacgaaaaa atcatcggtg taaaattcac tgccggcgat
     7021 ttctacctgt tagagcgttt acgcaaagcg ttcccgaacc acttaatcta cgcaggtttc
     7081 gatgaaatga tgctaccggc aacggtatta ggtgtggacg gtgcaatcgg ctcaaccttc
     7141 aacgtaaacg gtattcgtgc aagacaaatc tttgaattag cccaacaagg caaaatcaaa
     7201 gaagcatttg aaatccaaaa tgtaaccaac gatttaatcg aaggcatttt aggcaacggt
     7261 ttataccaaa ccatcaaagg cttattggag ttagaaggtg tgcaagcagg ttactgccgt
     7321 gagccgatga cgaaagaaca aactccggca caaaaagaag tgaccaaaca gttaaaagct
     7381 aaattcttgt aatttaagtt gcaaaaggct aaacgaaaat caccgcttgt agtaacaagc
     7441 ggtgattttt tctcaacgac ttgcaattaa tgaagccatt ctgctttttc taccacggtg
     7501 taacgtgtca ccattatatt ttaatcgcac tttttcttgg cgagtatttt ctgatttcaa
     7561 ctctctacct atatcataaa accctgtact ccagatattt tgagtaatat ccgcttttac
     7621 aataatatca ttgaagccgt tggtctgttt gttatccatt tgcaatacca agtttgtgtt
     7681 tccgttttgg tttctttatc atctaaaata gaccaaaaag tcatcgggta atcaaaaaca
     7741 agttttaact tttctttttc cggcacaaat aacatcaaat gatcatttgc agaatactca
     7801 ggagcacttg gaccacgagc agcattatta aacctcacgc cgaaagctct tactttgtcg
     7861 tttagaatat aacgggcggt atcaatttta agactatctg cattcacatc gatagaggca
     7921 tcgatctcca tatcctgctc ccacgattgc aatatcgcat tatcattcac acgagcaaca
     7981 aaaagcgtcc acttaggtgt gttttcgtcg ttttgataat tttctttgct gtatttaggc
     8041 tctattaccg cataactcac taaggtttcc gttgaattgt taggagctgt tttacaggca
     8101 gaagctaaag tacgagcaga aagtttctct tgagaaatct taaagtaatg agcaataatt
     8161 tgatgttgtt gctcagcaca aacctgtgtg ttattacctt catctgcttg agttgcaagc
     8221 gtaagtaaaa gaactaagag gagtatcttt ttcatataga tttatccgta tagaaagata
     8281 actcattcta tggggtactg actctttttg catagagaga aagaaaaaaa tttggtcgga
     8341 aaaataacgg cgagcctagc gaaaacaagg gttcgccgta attttatggg ggaagctatg
     8401 taaaaaacaa aatgagcagg attagaaaaa aatgagcagt ttttgcgata ttttttgcat
     8461 aggtttgatc ggttttaaaa ctattttaaa tctgttttaa actaaagagt gtccgatgtg
     8521 gactacctgc ccgatgattt ggaggttttg agcttcttcg gcggtaatct gtattgggcg
     8581 gtaggactcg ttatcgctaa ttaattcaat atagtcccat tcttttctaa tccgtttaac
     8641 ccatacgctt tccccattct gcacaagata aatcttatca tcaccacgag gctctcgttt
     8701 gctgaaatct accagcattt ggtcactgtc tgcaatggta gggtgcattg atgttccatt
     8761 tgcccaaaac acgccgcagt tgtgggcttt tacgccgagg ctttgcagca ggctgtcggc
     8821 gtaaggttct tgcccgtctg gcttcgttac gccctcgtta aagctgccaa agcctgctga
     8881 aacgttgatt gttctgaagc tgttaatcat tgaaacaata tcatcagcca ttttttctag
     8941 tcgctcaaac tctcttgcca caatactggt attctctgat tgtggtttgc tttccttacc
     9001 tgttgccagc cattcaaggc tcacatttga cacctctgct atttttacaa gatttgaacg
     9061 agatggatct gcctctcctt ttacccacct agatagtgat gcttgggcta cccccactgc
     9121 tcttgcaaac tcactgtaat tgtccttaaa gctatttttt gcaatccatt tcattctttc
     9181 tgagaagctc tcatcgtaaa tgtttggttt actcatcttt tacgtttcca ttaataaagt
     9241 tttactcgta aaacatactc ataaaccatt gatttttaag ttatttatga ataaagcaaa
     9301 aatattttag atgtttttat gttttacggt tgatttgttt aaagttttac ggttaaatac
     9361 acgcatcaaa tagataaaaa gaggtgtatc gaatgagtgt attaaacgat gttaaaaaaa
     9421 ccgcacagag agattggcat aaagccgata ttcttgcgga acttcgtaaa aaaggttggt
     9481 cacttcgttc tttggctaaa gcaggcaatg ttagccataa cacgctgaag tctgttttag
     9541 acaagcctta ccccaaaatg gaacgcttag ttgcaaatgc cataggggtt gcccctgaag
     9601 tgatttgggc tgggcgaaca gcagaacgca ttgaacgtaa tcggcgacca actttaacta
     9661 ataagtttta atcataaatg atctttaacg taaaagatat aggagaagaa catttatgag
     9721 cgaattaagt ttaaaaacgc actattcagt ggctgaattg ttaagtttta agttatctag
     9781 cctaccaagt gctcataaaa atgtgcttga gaaagcaata agggaaaact ggcaatctca
     9841 aaaacgcaaa ggcagaggcg gcggggttga atatgaatta atcagtttac ccaccgaagt
     9901 ccaacaggaa atccgcacca agttactcaa acttcttcct gctgaaatca gcaaaggcga
     9961 attgagtgta gtgcgacaaa acattgattt ggagcagata accgataaac aactttctac
    10021 ggcagatgct cgcattatgg tggtgcggtg gttcttgatg caggaagtgc agttggggct
    10081 aagccgcaca aaaacgctag accaagtcat tgcagcggtg gcaagcagtg aaattcctgc
    10141 tgaaatttgc aaagcgatta tggcgggcaa tagtaaagcc ggtggaaagt taaagctatc
    10201 taaacgcacc ttgcatagtt gggtgctggc gtatgaggca ggcgaaaatt cagcggaacg
    10261 gttaaaacag atgataccgc tgaaaacaca aaaacgtgcc gtgcccgagc ggtgtggttg
    10321 gttgcaagcc tttctgccgt tttatcaaac ctttagcaat gtggcactca cacaggctta
    10381 tgctcaattt gcaatgcagt atgagggcga agatttacct acagagagcc aagttcggta
    10441 tgccttgaag cagttgcccg attatgtggt gcaacaaggg cgg
//
LOCUS       DANLXK010000088        10409 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.089, whole genome shotgun sequence.
ACCESSION   DANLXK010000088 DANLXK010000000
VERSION     DANLXK010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10409
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1841
                     /locus_tag="PXD88_001864"
     CDS             <1..1841
                     /locus_tag="PXD88_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL6281416.1"
                     /translation="NRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFVAITYISF
                     ENPQEVWTWGLKMAIYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNILKRSVWII
                     ALLLNTSIFTNLEMGISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENVTTEEKKE
                     SKSILLTIVKLVLLLAPIILIILIALGYYYTALVIIEHLVDSYFAIITWIIIRNILYR
                     AFSISSRRLAYRRLQEKREAAEAKTRAKAEQNDENPDGVELPFELKEDSIAVSEVKNQ
                     MLKLTDFVLWIGLFVLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMESITLLNLL
                     TAILIIVVMVVLIRNLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGAIFAFGTL
                     GMSWSKLQWLLTALSVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGTYSGTVSK
                     IRIRATTLVDFDGKEVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSDLELVKRL
                     LLQVAEENPKVLKDPQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALNTRIHQLF
                     NEHNIDIAFNQLDVYIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            1844..2926
                     /gene="aroC"
                     /locus_tag="PXD88_001865"
     CDS             1844..2926
                     /gene="aroC"
                     /locus_tag="PXD88_001865"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL6281417.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            2945..3772
                     /gene="mepA"
                     /locus_tag="PXD88_001866"
     CDS             2945..3772
                     /gene="mepA"
                     /locus_tag="PXD88_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL6281418.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            3845..5764
                     /locus_tag="PXD88_001867"
     CDS             3845..5764
                     /locus_tag="PXD88_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL6281419.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            5870..6196
                     /gene="secG"
                     /locus_tag="PXD88_001868"
     CDS             5870..6196
                     /gene="secG"
                     /locus_tag="PXD88_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL6281420.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIE
                     NSDIPQ"
     gene            6221..6306
                     /locus_tag="PXD88_001869"
     tRNA            6221..6306
                     /locus_tag="PXD88_001869"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6255..6257,aa:Leu,seq:gag)
     gene            6509..7750
                     /locus_tag="PXD88_001870"
     CDS             6509..7750
                     /locus_tag="PXD88_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6281421.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(7909..9777)
                     /locus_tag="PXD88_001871"
     CDS             complement(7909..9777)
                     /locus_tag="PXD88_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL6281422.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(9788..10183)
                     /locus_tag="PXD88_001872"
     CDS             complement(9788..10183)
                     /locus_tag="PXD88_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281423.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         3057 a         2198 c         2184 g         2970 t
ORIGIN      
        1 ataatcgact aaaaattgtc gccacagata gccaatggaa cacccctctt gctatttttt
       61 ggacattagt gctttgcctg ccaagtacac taatgttctt agccggattt gttgctatca
      121 cttatatttc atttgaaaat cctcaggaag tctggacttg gggattaaaa atggcaattt
      181 attggctgta ttttgccttt ttagtggcga tgctacgccc gcacggcata ggacatattc
      241 actttaatat gccacaaaaa agtaatgaaa tcttccgtaa tattttaaaa cgttcggtat
      301 ggatcattgc tttattactg aacacctcta tttttacaaa cttagagatg ggaatatctt
      361 acgacatgct tggacaaaca atgactattt ttgtccttat attaatgatt tggatgattg
      421 taccggcatt taggcaagct atttctacct atgagaatgt cacaacagaa gagaaaaaag
      481 aatctaaaag tattttactc actattgtca aattagtgct actgcttgcc cctatcattc
      541 ttatcattct gattgcattg ggctattact atactgcact ggtgatcatt gagcatttag
      601 tagattctta ttttgcgatc attacttgga ttattattcg taatattctc tatcgagcat
      661 tctctatttc atcacgccgt ctggcttaca gacgtttaca agaaaaaaga gaagcagctg
      721 aagccaaaac acgagctaaa gcagaacaaa atgatgaaaa cccggacggt gtcgagcttc
      781 cttttgagct aaaagaagac tctattgccg taagcgaagt caagaaccaa atgttgaaat
      841 taactgattt tgtgctttgg attggcttat ttgtgctgct ttactgggtt tggtcggact
      901 taattactgt tgcactctac ctagacggcg ttaccttatg gcaacaaagt gttacaacag
      961 aagccgggat tgtaatggaa tccattaccc tgctgaattt actcactgct attctgatta
     1021 ttgtggtaat ggtggtactc attcggaact tatccggttt acttgaagcc ctgattttct
     1081 cgcacttcaa gttatcgcaa ggtacaccat acacaattac cacactctta acctatttga
     1141 ttattgcgtt aggggcaatc tttgcgttcg gtacattagg gatgtcttgg agcaagctcc
     1201 aatggctact aactgcactt tctgtcggtc tgggttttgg tatgcaagag atctttgcaa
     1261 acttcgtttc agggattatc atcttgtttg aacgtccaat gcggattggc gacaccatta
     1321 ccatcggcac ttacagcggt acggtttcca aaattcgtat tcgtgccaca accttagtcg
     1381 attttgacgg caaagaagtg attgtaccaa acaaagcatt cgtaaccgaa cgcttggtga
     1441 actgggcatt aagcagcacc gcaacccgca ttattgttca agtcggcgtg gcttacgggt
     1501 ctgatttaga attagtcaaa cggctgttat tacaagtggc ggaagaaaat ccgaaagtct
     1561 tgaaagatcc acaaccaagg gcttatttcc ttacctttgg tgcaagcact ttagatcacg
     1621 aattaagagc ctatgtgaac gatttatctg atcgtaaccc aactattgat gcactaaata
     1681 cacgcatcca ccagctcttt aatgaacata atattgatat tgcatttaac caattagatg
     1741 tttatatcaa aaacaacgat acacaagatg aaattaaagt agattcaaaa cgctttgagt
     1801 ttgaacgacc aaataacata acagcaaaag aaaaggaata acaatggcag gcaacagcat
     1861 cggacaatta tttaaagtga ccactttcgg cgaatctcac ggtattgcat taggctgtat
     1921 cgtagatggc gtaccgccga atatggcttt aagcgaagca gatttacagc cggatttaga
     1981 ccgccgtaaa cccggtactt cacgctacac cacgcctcgc cgtgaagatg atgaagtgca
     2041 aattttatcg ggagtctttg aaggcaaaac gacgggaaca agcattggtt taatcattaa
     2101 aaacggtgac caacgctcac aagactatgg cgacattgcc gaaaaattcc gcccggggca
     2161 cgcagattat acctatcagc aaaaatacgg cattcgagat taccgtggcg gtgggcgttc
     2221 ttctgctcgg gaaaccgcaa tgcgggttgc cgccggggcg attgccaaaa aatatttgcg
     2281 tgagcaattt ggcattgaag tgcgaggcta cctctcacaa atcggcaata tcaaaattga
     2341 cccgaaaacc gttgaaaata ttgaacaaat tgattggcac gcagtcaata gtaatccttt
     2401 cttctgcccc gatcccgttg cgattgaagg ctttgatgcc ttaattcgtg agctgaaaaa
     2461 agagggcgat tcggtggggg caaaattaac cgtgattgca gagcgtgtac ctgtagggtt
     2521 aggcgaacct gtgtttgacc gcctagatgc cgaccttgcc cacgccttaa tgtcgatcaa
     2581 cgccgtgaaa gcggtggaaa ttggcgatgg ttttgcagtt gtggaacaac gtggtagcca
     2641 gcaccgagat gagatgacgc cgcaaggctt tctctctaat cacgccggcg gaattttagg
     2701 tggtattagc tccggtcagc cgattatcgc tcatattgcg ttaaagccga cctcaagcat
     2761 tactattccc ggcagaagcg tgaacaaaaa caacgaagcc gttgaagtga tcactaaagg
     2821 cagacacgac ccctgtgtag gtattcgtgc tgtgccgatt gcagaagcga tgatggcgat
     2881 tgtactactc gaccatctgt taagatttaa ggctcaatgc cgttaaacac ataaaattgg
     2941 aaaaatgaaa ttattaaaaa cacttttagt ctcaagcctt gcttttacag ctaccgcact
     3001 gaatgcaacg caatgggaga aaatcaaaac tccggttcaa ggaaaagcac aatctatcgg
     3061 cggttatagt aacggctgta ttattggggc acagcccctt gcattaaaag gcgaaggcta
     3121 ccaagtgatc cgctcggctc gtaaccgcta ttacggacac ccacaactgc tcgattatct
     3181 cactcactta ggcaaaaaaa ccaaagctgc cggtgtgccg accattttaa tcggcgatat
     3241 gggaatgcct gccggtgggc gttttgcctc cggtcacgcc tcccatcaaa ccgggctgga
     3301 tgctgatatt tggtttaagt tcggaccgat ggacgatgaa accgcccgca atccagcagg
     3361 gcttgccacc attatggtaa accgtagtac cgagcgggtt gatgattcac tctggaatca
     3421 acaccatact aatttagtaa aacttgctgc aaccgatcct cgagtggatc gcatttttgt
     3481 caatcctgcc attaaagtga aactctgcca aaccgcaggc aatgatcgtg cttggttacg
     3541 caaaattcgc ccgtggtacg gacacgactc ccatttccac gtccgtttaa cctgcccggc
     3601 tgatgccgca agttgtgaaa atcaagccct tgtgcctgcc ggtgacggct gtggtgaaga
     3661 gctttactcg tggtttgagc cgaaagaagc ctccggcaca ccaaaagcca aagtgctacc
     3721 cacagcgcct gttcaatgtc agatgatttt atctgaacaa ggcttgaatt aattgcaaaa
     3781 taacaacctt ttttgaccgc ttgtcagccc acaagcggtt cattttctta aataatttac
     3841 gattatgcgt ttatttgttg ccgaaaaacc cagccttgcc cgagcgattg ccgatgtgtt
     3901 accaaaaccc cataccaaag gagatggctt tatccaatgc ggcgaacacg acactgttac
     3961 ttggtgtatc ggtcatttat tggaacaggc tgaacccgat gtctatgatg agcgtttcaa
     4021 aatgtggcga atggaacatt tgccgattgt gcctgaacaa tggaaattga ttcccaaaaa
     4081 agagacgctc aagcagttta aagtggtgga aaagctgatt aaaaaagccg atgttttagt
     4141 caatgccgga gacccggatc gagaagggca gctgttggtg gacgaagttt ttggctattt
     4201 gaatttatct gctgaacgca aaagccaaat tcagcgttgt ttggtaagcg atctcaaccc
     4261 gaatgcggtg agccgagcca ttgaaaaatt gcaaaaaaac agcgatttta taccgcttgc
     4321 aacctctgct ctcgcccgag ccagagcgga ttggctgtat ggtatcaata tgacccgagc
     4381 ctatacccta caggggcgtt gggcaggcta taaaggcgtg ttatcagtcg gacgtgtgca
     4441 aacgccggta ttagggctga ttgttcgccg agatctggag atcgagcatt tcgtgccaaa
     4501 ggattatttt gaggtgttgg cacagattgt cgtgccggaa acccaagagc gatttaaggc
     4561 gcagtggcaa ccgagcaaag cctgtgaaga ttatcaagat gaagatgggc gggtgctgtc
     4621 tcgtccattg gcagaaaatg tggtaaaacg gattaccgac cagccggcaa ccgtcaccga
     4681 atatcaaaat aaaattgaaa aagaaactgc accgctgcct tattctcttt cggtattaca
     4741 aatggaagcc gccggcagat atgggctatc cgcccaagcg gtgttggata tttgccaaaa
     4801 gctgtatgaa acccataaac taattaccta ccctcgttct gataatcggt atttgccgac
     4861 cgaacatttc aacgacagat ttaaagtgat ggcggcgatt gctcatcatt tacctgaata
     4921 tcaacaaaaa ccggaagtga ttgatgccac tattcgcaat cgttgctgga atgataaaga
     4981 ggtggaagcc caccacgcca ttattcccac tgcacggcaa gggacggtac atttaaccga
     5041 aaatgaaaaa agagtttatc aactcattgc ccgccaatat ctaatgcaat tctgccctga
     5101 tgcggaatat cgcaaaagta aaatcgggct tgaaattgca ggtggtagtt ttgtcgctca
     5161 agcacgcaac cttgtaattg ccggctggcg agcgttactg ggtaaagaag atagccttga
     5221 cgatgcagag ccactactac cgattgtcaa aaaagggcaa atcctccatt gtgaaaaagg
     5281 ggaaattgtc agcaaaaaaa cacaaccgcc ccgccacttt actgatcgca gtttgctttc
     5341 agcaatgacc gggatcgccc gttttgtaca agataaagaa ttgaaaaaaa tcttgcgtga
     5401 aaccgatggt ttaggcacgg aggcaacccg agccggtatt atcgaattgc tgtttaaacg
     5461 tggtttttta atccgtaaag ggaaaaatat ccacagtacc gaagccggca gaatattgat
     5521 tcaagcactt cccgactctg ctacccagcc ggatatgacc gctcattggg aaatgcagct
     5581 gaatcaaatc agcaaaaaag agaccagcta tcagcaattt atgtttgatc taaaccaaca
     5641 gctcccacat ttattacaaa gcccaaaccg ccaagtgttg caaaatttag cgaaaatcac
     5701 accgcttgca agcggcaata aacctcgtta ttttaaaaag cgaacacaaa ctgctgaaaa
     5761 ttaaatcaag caggtaaaaa ttactgttta gcacttgtca aacgggcgta aattctatat
     5821 tatgcacgcc attgcaaatt tcgcataaag aatacaagag aataaattaa tgttaattaa
     5881 tgtactcact attgtttatc ttgtagttgc cgtattactg atcgcatttg tattaatgca
     5941 acaaggtaaa ggcgctgatg caggtgcttc tttcggggcg ggtgcttcag caacagtttt
     6001 cggctcagca ggatcagcaa attttttatc aagaacaact gctctacttg caacgatttt
     6061 cttcgcaatt agtttagtta tcggtaattt aagctcacac aatgtagcac cgaaaagcca
     6121 atttgaagac ttaagccaag ttgaacaaaa gcaagtagaa cctgtaaaaa tagaaaatag
     6181 cgatatccct caataatcgc ttaacattaa aaagaataaa gctctggtgg tggaattggt
     6241 agacacgcca tcttgagggg gtggtggaca cagtccgtgc gagttcaagt ctcgcccaga
     6301 gcaccattca actaaatttg gctcaacgga gctaaactaa aaaagcctta gaaagcctgt
     6361 aaaatcaaca tttacaggct tttttactat cttaactcaa cggctctaaa cgtttcctat
     6421 cacaaatttt agttacacgt ttagttacac gttttaaatc gtgttactat actttcaata
     6481 atcgtgtaac acttcgtagg tttaatttat ggctagaaca actaaagcat taaataaaac
     6541 tcaaatagaa aatgccaaat caaaggataa agaatatatt ttatccgatg gcgatggatt
     6601 aaatcttaga gttaaacctc tccctaaagg ctctaaaatt tggattttta actacactaa
     6661 cccacaaact aaaaacagaa caaatttaac tattgggcgt taccccttaa ttacacttgc
     6721 ggaagctcgc actatatgtg atggctaccg ctcgttaata gagaaaggca tagatccaca
     6781 ggaagaaaaa aagcggctgc aacaagaagc agaaaatcga gtaaatgata ctttccggaa
     6841 tgtggccgaa agctatttca atggtattta taaagagaaa gcaaaaaatc cgattactcg
     6901 tgaaaagaat tggataaggt tagaaaatca tattttcccc tatatcgggg ataaacacgt
     6961 tgaagaaatc aaagtaaaag cccttgttga tatttattct aaagtggcag ataaaagcaa
     7021 cacattaaaa aaactgcatc agcttgtatc tgctgtaatg gatcacgcca ttacgcaagg
     7081 cattatagaa agccataact gccgattagc agttaaaaac ttttatatca agccatctac
     7141 gccaaatccc actattgagc ttgaagaatt accgcagtta tttactgatt tacataatgc
     7201 gaagttatca aagcaaactt acgcccttgt ttgttggtcg ttcttgactg ctctacgccc
     7261 aaatgaagcc gttaatgctg aatggaaaga aatagacttt gagaaaaagc tatggaatat
     7321 ccctaaagag aagatgaaag gaaaagcaga taaaaaacgc cctcactctg tgccgttatc
     7381 ctcccaagcg ttaaagatat tagagatgat gaaaatgcac tctaattcta gcccttttgt
     7441 ttttccaggt cgttcatcaa atagtaaacc aatgagcaac gcaacggtaa attcaacatt
     7501 aaaaaggaat ggatataaag atagactaac cgcacacggt attcgggcat ttgtgaaaac
     7561 atttctatct tctcgcaaag tagatcgcca cgtttccgaa agtatattat cccatttatt
     7621 agaaggtgga gatgatttag aaaacacata caaccgatat gattttttag aagagcgtgt
     7681 gccagtaatg cagcttttag gtgattattg cgaacagtgc ggaatgaatt tagagttagt
     7741 tcggggttag ggaggtaaaa tatatgattt tagtcgtcac gtcatcactt ttcccacttt
     7801 cccctttaaa atcaaatagt taagtggtga tgactggttt taaagtcatc attaagtcat
     7861 cacaaaaagg tgatgaccta gaaaaaaaga ggggtttccc cctctttgct aattcaaaat
     7921 atcactttga aagtcatcaa aatttttgaa atgaacgttt gttcgttgcc ctttattcgt
     7981 ctttcgtttt gtgaaatcgt gcttattgcc gtgttgcttt actgcttgct caatacctac
     8041 tacaaaagta tttaagccta gttctagcac attcttagcc ttaacaaagg ctaaatatgc
     8101 cggataaagg tgcgttctta ttttgtcgtg tccaagcgtg ttgccagttc cgatataaag
     8161 cccgtctgta ttttctgttg tatatagata ctcgaaaaaa tccgttaatg ggtcagactg
     8221 ctttttaatc tccaacgcct ctaggctctc tttttgctcc tctaaggctc ttttagcttc
     8281 gagtgggtca gggaaggtat caagcacttt acggataatg ccccctatct ctaatgtaat
     8341 tttatccata aaatacggat cacgttcatt ttcaggcggt cttttattaa aacggaaatt
     8401 gacaatccgc ctatctatac cgccattccg ttctgtccat ttacaagggt cgttattgac
     8461 gatcataatc attgccgcaa ttcttgcgtt aaatgggtgc ttgttcttcg gatcgactcg
     8521 caccatatca ccgccagtaa tcgctttcaa tccgccacca tctccagcgt atttcgtttg
     8581 ctcggaacag ataatcagct ttttatcttc cagccctgcg attttgcgtt catcatcaaa
     8641 gttttctagc cttgctgaag ctgtgttctt ttctccagct aatagtgtcg caatgccagc
     8701 aaataccgat ttaccgcttc cgcctttccc tgttacttgg aagaatactt gccagttgta
     8761 gcggtttgtt aaaatcgcat agagagcggc tagaatgttc ttcgccttgt cttgcttgcc
     8821 gtctgataca aagttaagcc attgatcaaa gtgtggtgtt tcggctacgt tctcgtcata
     8881 gctatgtgga atataagccg ttagccagtt ttggcggtta acggttcttt gaacatttac
     8941 cgaataaggt gggtaagggg ttaaagtttc gggttgcccc ttgctattcc aaccaatcac
     9001 cgtagccggt tgtacttcca ttttttgaag cgtgccgaat ggtcgggttt tatcgttggc
     9061 tgtcgtgcgt ggataagcta agaagccttt agcttgtttt gtgcctgtac cgttggttaa
     9121 atcggtttct tcagtttcga caaaggattc tgaaatttct tcagtcagcc agcctagaat
     9181 atctacacca ccaaagtcta aaatctcttg cgtggttttc gggtaagcgt aaatattatg
     9241 aacggcaatc gttacttcat tcattttcgg ggtggcggtt tcggtgcgtg cttcgccttc
     9301 accgatatga tttaccgctg caccgccagc cgatactaat tttttatatt ctttgccttg
     9361 ggtcagtttc accacgttag caatttgtcg cataacagaa tcatctgtta ggcgtttcat
     9421 tacttgcttg tcaagttccg gaatcactga atagccaccg tctgcccctc catttgtatt
     9481 cgtagcaagc gaacgcaatt cgcctgtttt aatccagtgg cgaagctcgt catcagatac
     9541 tttcacattt gcggtttcaa cctgttgccc cggttggtta cgctgttcat cagtaatcgc
     9601 ttcataacgt gcgatttctt ttactaaatt ttcagcttgt gagcggagtt catcaaactt
     9661 agccccttct gcttcagttg ttgagcgttt ttcttcgtct gctttggtta aaattgaacg
     9721 catttctgct tcaatagccg ctttttgttg gcggagttct aaaagttttt taaacattgc
     9781 cttatcctta attcaaataa ttgatattgt agtgaagcgt tgctgttttc cacgctgatt
     9841 cgttagcatc ataatcatag ctatacttag ccagcacaca ttcgtccata ctgtggaatg
     9901 tggcttgatt catcacatca ctgatttttt gagccactaa atctaggtcg ttttcggttg
     9961 aaaacattgg taagtaaatg ccgattttca aataggcgtt gcattcgcca tcgcaaagcg
    10021 tgagttggct atattccgct tcatcaatga atacggcgat agccggtaat tcattttcta
    10081 catcggtgaa tacggctcgg ccgttatgga aatgttgaat gccttgaatg ttaccttgta
    10141 ataagtcgat aacttcttgg cggattgctt cgttagaaat cataaaaaag tcctcttaat
    10201 taagaaggct acaattagcc acagaacaat ataggcataa tttcaacgga gtaaataggg
    10261 taaaatttaa tcgtttagct acgtttgaac acgttaagag gataattttt aaatgattat
    10321 tttttattca acaaaagaca aaatggaagg aaataaacga ataattttat agaagtgatg
    10381 actgtgacta cttagtgacg acttaaaaa
//
LOCUS       DANLXK010000089        10282 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.090, whole genome shotgun sequence.
ACCESSION   DANLXK010000089 DANLXK010000000
VERSION     DANLXK010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10282
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            184..561
                     /locus_tag="PXD88_001873"
     CDS             184..561
                     /locus_tag="PXD88_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL6281424.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            650..1237
                     /gene="yihI"
                     /locus_tag="PXD88_001874"
     CDS             650..1237
                     /gene="yihI"
                     /locus_tag="PXD88_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL6281425.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            1251..1718
                     /locus_tag="PXD88_001875"
     CDS             1251..1718
                     /locus_tag="PXD88_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL6281426.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            1718..3085
                     /gene="hemN"
                     /locus_tag="PXD88_001876"
     CDS             1718..3085
                     /gene="hemN"
                     /locus_tag="PXD88_001876"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL6281427.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            3159..5492
                     /gene="lptD"
                     /locus_tag="PXD88_001877"
     CDS             3159..5492
                     /gene="lptD"
                     /locus_tag="PXD88_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL6281428.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(5634..8273)
                     /gene="ppc"
                     /locus_tag="PXD88_001878"
     CDS             complement(5634..8273)
                     /gene="ppc"
                     /locus_tag="PXD88_001878"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL6281429.1"
                     /translation="MNQQYSTIQHNIHMLGEFLGETIRDAQGNYILELIESIRVLSRN
                     SRAGDENAREQLLDKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGS
                     RSLDSLFLRLKSQNIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNL
                     LEHDDLTEAESYKIKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVP
                     EFCRQLNFYLEKHFGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKAT
                     ELFLQDIKNLAEELSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEG
                     KISTIDESDILTSDQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRL
                     DIRQESTRHEMAIAEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPET
                     KEVLDTCKIVAEQPEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLG
                     DLDHSEKVMTDLFNIGWYRGVINNYQMIMIGYSDSAKDAGMFAAGWAQYRAQEALVNL
                     CEKYNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPA
                     VAVESLELYASAILEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFR
                     SATPEQELSRLPLGSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQL
                     IDEGNETLLKEMCNEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLR
                     TQLQADLKTVLALAHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENA
                     DPVLEQALMITITGIAAGMRNTG"
     gene            8398..9366
                     /locus_tag="PXD88_001879"
     CDS             8398..9366
                     /locus_tag="PXD88_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL6281430.1"
                     /translation="MCLKLLFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVF
                     LIGILAYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSR
                     HVKKGTTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVI
                     TLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESA
                     DGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAI
                     GSFCSLIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
     gene            complement(9415..9585)
                     /locus_tag="PXD88_001880"
     CDS             complement(9415..9585)
                     /locus_tag="PXD88_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL6281431.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(9586..10167)
                     /locus_tag="PXD88_001881"
                     /pseudo
     CDS             complement(9586..10167)
                     /locus_tag="PXD88_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
BASE COUNT         3096 a         1959 c         2186 g         3041 t
ORIGIN      
        1 tggcatagta gttccttttt gatgtatcaa tactaaaaat aacctgtatt attctagcag
       61 atttctgggt aatcgaggag ttgataacat ttaaaaatta gcgttttgca aaattttcca
      121 aaaaaagacc gcttgttagg ctataatagc caaccaaaca gaccaattca aaggagaatc
      181 ggtatggaat atcaatttac ccatagtatt cacggggtgg tggcaaaatg ttcgatggat
      241 cacgaggcgt ttgctcgttg gttgaatgcc gaaataacgg aaaatcctag ccagttagcc
      301 cctattttcg ctgaaataga gaagtgtcga gccgcatttc cgaatcatta tgaatgtgtg
      361 tttgaagggc gggagtatag tctctatttt gattatgatg aagtgatggc aaaagcaaac
      421 aatttagatg ctgcttttga tgatgaggaa atggaagaag gctttcaatt ttacaatgaa
      481 gagagcatcg cattttgtgg cttagatgac tttgagaaat ttttgaaagc ctaccaacat
      541 tttgtgcaaa cttatcattg attgaaatga ttaattgaaa ccaaagctat taagggaatc
      601 taattccttg tagaatagcc gtttatagca attttaagat attaaattta tgagtcgtac
      661 taaaaaaaca cgtcgtatta ccgacattat gccggcaaga aagaccgata aacctaaaca
      721 gcccatgcct aaattaggtg gggggaaaaa tcgcaaactg acccgttatg agttagatgc
      781 tcaagcccgt gaggaaaaac gtaagcgtaa acataaaggc ttgccgacag gctcacgcaa
      841 tgctgatccg gcagagcaga aaaaagcagt ggtgaaagag gtgaaagatc cgcgtatcgg
      901 tagccgtaaa aaagtgccgt taatggtgga atttgtgaac cagccggaaa aagggcggac
      961 gattaaggct gtgccggttg agccaatcaa accaacgctt tcaccggaac aagagctgga
     1021 gcagttagaa aataacgaat gtttaaatca gttgttagat gatttggagg cgggcaaaac
     1081 cttatccgca gaagatcaga aatttatgaa tgaatgttta gatcgcattg atgaattaat
     1141 gactgagctt ggcatcgaat atgaagatga agagggcgat aatggcgatg cgttattacg
     1201 ccaatttgaa acgatggata ttaataaatt ccgctaggta gccgattatg atgctaagaa
     1261 tattcctgat ggtgcttgcc gctttgattt taatttcgct gggcgggtat gcactgcact
     1321 taatgctgaa agtgcgagct cagaaaaagc acgaacaagc actgattgaa caggcaaagc
     1381 aagcacaaaa agatcgttat attcggattt tagacagcat tgaagttatt gctcgggcaa
     1441 tgatttcaga acagtgcgat ttttcggaag gcgttttacg tttaaaaccg ctattagatg
     1501 ttctcggcag aaaattaagc gactatacgg cgatgtgggc gttgtatggc gtggtagaaa
     1561 atatgccgat tttagatgaa cgcaaaaatt taaaacgtaa cgaaagaatg aagttggatt
     1621 tagagcggga agcaaaagaa gcggagcttg aatcagacat caaaaatgag tgttaccaat
     1681 tattaaaaga tattgaagaa atgagaaagg caatctaatg tcagaaatta tttgggattt
     1741 agcccttatt caaaaatata accattcagg gcctcgttat acctcttacc caacagcgtt
     1801 ggagtttaac gaaaattaca ccaatgaaga ttttattcgt gctgcagctc gttaccctga
     1861 gcgtccgctt tcgctttatg tgcatattcc gttttgccat aaactgtgct atttctgtgg
     1921 ctgtaataaa gtgattactc gtcatcgcca taaagttgaa atttatttag attatttaga
     1981 gcgtgaaatt aaaactcgcg cacctctgtt tcaaaatcgt ttagtgaccc aaatacactg
     2041 gggtggcggt acgccgactt atttagacga agatcaatcg gcacgtttaa tgcaaatgct
     2101 acgagccaat tttgatgtga gcgatgatgc ggaaatcagc attgaaatgg atccgcgtga
     2161 aatcgaatta agtatgttgg atcacctgcg tgctatcggt tttaaccgtc tgagtatggg
     2221 tattcaggat ttcgataaag aagtgcaacg tttggtgaat cgtgagcaag atgaagagtt
     2281 tatttttgcc ttgatgaaac gggcaaaaga acttggtttt gtttcaacta atgtggattt
     2341 gatttacggc ttgccaaaac agaatgtgga aagctttatg tacaccttaa aacgtgtggt
     2401 agagctaaac cctgatcgta tgagcgtatt taactatgcc cacttgccaa gccgttttgc
     2461 tgcacaagtg aaaattaaag aagagttgtt gccggctccg gaaaccaaat tgacgatttt
     2521 gcaaaattcc atcgaatttt taggcaaaaa cggttataag tttatcggta tggatcactt
     2581 tgctaaacct gatgatgagt tagctattgc acaagaaaaa ggcattttac accgtaactt
     2641 ccaaggctat accactcaag aagagtgtga tttattggga atgggcgtat cggcaatcag
     2701 cttactcggc gatacttacg cccaaaaccg caaagaatta caacaatact atgctgatgt
     2761 tgaaaccaac ggtattgcgt tgcataaagg cattgcgtta acccaagatg attgcattcg
     2821 ccgtgatgtg ataaaagcct tgatttgtaa tttcaaatta gattttgcca ccattgaaaa
     2881 gcaatatggt attgatttta aacgttattt tgccgaagat ttagctttct tagcgccgtt
     2941 ggcggaagat gaattattaa cgatgaatga cgacagcatt gtggtttccc cacgagggcg
     3001 tttattgatc cgtaatattt gcttatgctt tgatgtctat tcaagacaat tagcgagaag
     3061 acagcagttt tcccgtatta tttaatgagc aagcggtcga ttttggtaaa aattttgcaa
     3121 aaacagaccg cttgttcccg gcttataaag gaaaaatgat gaaacagcgt tatagcttac
     3181 tttctcttgc tgtgatggca gcttgttata gcaacagtgc cgcagctgat ttaaagcaac
     3241 aatgtttact tggcgtgccg cattttcagg gcgaagtggt agagggcgat caacttagaa
     3301 tgcctgttac cattgaggct gacagtgcgg tcattaacca gcctcgtgat gccacctaca
     3361 ccggtgatgt aacgatcaaa caaggtaacc gttcgatttg ggcggatcag gtgcgggttg
     3421 agcaagatgg cgaaaatgcc cgaatggcgt atttgcaggg taattttaac taccaagata
     3481 atttgattca ggcaaccggt tcagatgcga ccatcaatct gctttccaaa gatgcgaatt
     3541 tagctaatgc taattaccaa ttaattggca gacaagggcg tggcacggca gaatccggtg
     3601 aattcggcaa cagcaaacac acgctgaaaa atgccagttt cacttcgtgc ttaccgaatg
     3661 ataattcgtg gcaaattgaa gcgaatgaaa tgattcagca cgttgatgaa gaatatgcgg
     3721 aaatgtggca cgcccgtttt aaagtgctgg gaatgccggt attttattcg ccttacttac
     3781 aatttccgat tggcgaccgc cgccgtagtg ggttattaat tccaagtttt gagcgttcaa
     3841 gcaaaaacgg ctggacatat tcgcaaccgt tttattggaa tatcgcaccg aatatggact
     3901 cgaccatcac tccaacttac tattcacgcc gtggttggca aatcagcccg gaatttcgtt
     3961 atttaacgaa aatcgggcaa ggcttagtgg caaccgaata tatggcgaaa gatcgtttaa
     4021 gcgagtacca accgggaaat gatgatcgta aacgctattt attccactgg cgtcacgcaa
     4081 tgagtttttt aaccgattgg cgtttctcgg tcgattacac caaagtgagc gacagacgtt
     4141 atttctctga ttttgattcg gattatggta gcagtactga tggctatgcg acgcagaatt
     4201 ttaaattagg ctactatcag ccgaattata atatctcaat ttcaggtaaa aaattccaaa
     4261 ccttcgatga gttggatatc gggccttatc gcgttctgcc acaaattgat tttaactatt
     4321 ataaaaacga tctaattaaa ggcggagatt tcaaattctt tgcccaagca gcccgttttg
     4381 aaaatgatag taaattaatg ccaaaagcgt ggcgtttcca cgctgagcca acactgaatt
     4441 tcccattagc gaaccgctat ggtagcttaa atttagaaac caagctctat gcaacctact
     4501 atcaacaaac gaaaggtagt gagagtacgg aagaaattaa gaaaagtgta agtcgtgtac
     4561 tgccacagat taagctcgat tttaaaaccg tgttggaatc cgataaacag cttttctctg
     4621 gctatactca aacgcttgag cctcgggtgc aatatattta tcgcccatat aaggatcaaa
     4681 gcgatattgg ctcgaaagca catcgaagtg tgagcttagg ctatgactct gcattattgc
     4741 aaaacgacta tttctcactg tttaatgaca gacgttatag cggtttagat cgtatttcgt
     4801 cagcaaattt agtcaccgca ggtggcacaa cccgtttctt taaagaggca accggtgaag
     4861 aggtgtttaa tttcagctta ggacaaactt attatataag cccgtctaaa attgatgata
     4921 cctcagataa cagcactaaa ggtcatacga cttcatgggc agcggaatct aactggaaat
     4981 tccataagaa ttggaattgg catggtagct atcaatatga tactcgttta aaccaaacgg
     5041 cgttagcgaa tatgtcattg caatacaaac cacagtcaga caaattgatt cagcttaatt
     5101 accgctatgc aagtaaagat tacatcaatc aaaacttgaa cacgaataag tatgggcaat
     5161 ccattaaaca agtgggcggt gtgctaggtt gggaattaac cgataaagtg tcggtaatga
     5221 ccagttatta ccacgacctt gcattgaaaa aaccggtgga agggcaaatt tcgcttaact
     5281 acaacacttg ctgttgggcg gcaaatgtgt atgtggctcg tcgcttagtt tcaacgccgg
     5341 taggttcatc tgatacgatc aatgatttct actatgacaa taaattcggc attaactttg
     5401 agctacgctt tggcacaaac tacagcaatg gtgtaacccg tatgctaaaa cgaggtatta
     5461 ttccttacac cgagccgtat agcattaatt aacaaagtaa aaacaaataa gtaaaaatac
     5521 aaatcggggc gaaaaatatt tgccccgatt tttttatatt tggctgataa gcggttaaat
     5581 tctgttggaa ttttgcaaat cttccgctaa attcaaccgc ttgccatcga aacttaacct
     5641 gtatttcgca tacctgcggc aatacctgtg atggtgatca tcaatgcttg ctctagtaca
     5701 ggatcagcat tttcaccttg tttgcgaatc ctatctaaca attctacctg aagtagattg
     5761 agcggatcgg tataaatatt gcgtagtgca atcgattctg cgatccaagg taaatcggcc
     5821 attaattgtc catcgtgagc cagtgcaagt acggttttaa gatcagcctg tagttgcgta
     5881 cgcaacatat tgcctaaacg gtgtagtttt ggctcgacta ggcgttggtc gtaatattcc
     5941 gccagccaaa tatcagcttt actaaatacc atttccagca ttccgatacg ggtcgagaaa
     6001 aacggccatt cgttacacat ttcttttagt aaggtttcat taccttcatc aatcaactgt
     6061 tgcaatgctt gccctgcacc taaccaagca ggtagcatta agcggttttg catccaagcg
     6121 aaaatccaag gaattgcacg caaactctcc actccgcctt ttggattacg ttttgcaggg
     6181 cgtgagccaa gcggcagacg ggaaagttct tgctctggtg tagcagagcg gaaatacggt
     6241 acgaagtcta gctcgccacg caccatatca cggtaaattt ggcaagaaat atcggaggct
     6301 tttgctagca catctcgcca ttgctgcttt ggctccggtg gtgggaaaat attcgcttct
     6361 aaaatcgcac tggcatagag ttctaaactt tcaactgcca cggcaggtaa gcctaattta
     6421 aagcggatca tttctccttg ttcggtcact cgtaagccat ttttgagtga gcgaggtggc
     6481 tgagaaagta aggctgcgtg agccggtgcg ccaccacgcc cgatagtacc accacgaccg
     6541 tggaataagg ttaattcaat attatatttt tcacataaat taaccagagc ttcttgcgcc
     6601 cgatattgcg cccagccggc agcaaacatt ccggcatctt tggcggaatc agagtagccg
     6661 atcataatca tttggtaatt gttgatgacg ccacgatacc agccgatatt aaataaatcg
     6721 gtcatcactt tttcactatg atctaaatcg cctagcgttt caaataatgg ggcaaccgga
     6781 atagtaaatt tgcaccccgc ctctttgagt aaaaggtgaa ccgagagtac atcagaggcc
     6841 tctcttgcca ttgaaatgac ataggctgaa atgacacctt caggttgctc ggcaacaatt
     6901 ttacaagtgt ctaacacttc tttagtttca gggcttggag tccagttggt tggaatcaat
     6961 gggcggcgag aactgagttc acgcactaag aatgcctgtt tatcatcttc cgtccagtga
     7021 gcataatcgc ctaagccgat atagcgggta atttctgcaa tcgccatttc gtggcgggta
     7081 ctttcttggc gaatatctaa gcgtgataaa cctaaaccaa aacagtttat acgacgtaag
     7141 caatctagta atgcaccatt tgcaataatt cgcataccac aggcttgtaa tgactcatag
     7201 caatcaaaaa gcggttccca caattgctga tctgaagtta aaatgtcact ttcatcaata
     7261 gttgaaattt taccttccaa taattccgca tagtaaattt cggtattaat taatttctgg
     7321 cgtaatactt ttagtaatac gcgatatggc tctaaatggt tgccatattt agcacgaaat
     7381 gcaggggtac actgtgtaat cgataattct tcagcaagat ttttaatatc ttgtaagaac
     7441 aattccgtgg ctttccaacg gttcattctt aatacacggc gagttgtttc tgccgtgacg
     7501 aacgggttac cgtcacggtc tccgcccatc caagaagaaa aacggacagg ggctaaattt
     7561 accggatatt gcacaccaaa gtgtttttct aaatagaagt taagctgacg gcaaaattcc
     7621 ggcacggctt tccataaact attttcaatg actgccatac cgcctttggc ttcatcaaca
     7681 ggggttgggc gttgggttct gatttcatta gtatgccaag caagggcaat cagttgcatt
     7741 aaacggcgct tgattttata gctttctgcc tcagttaaat catcatgttc caacaaattc
     7801 aaacatttat tgatttcaac gtgtttatgc cccagcgaac ggcgggttac ttccgttggg
     7861 tgagctgtta gcactaaatc aatcattagg ctttccacgg ttttaatcac tttttcaacg
     7921 gggatatttt gtgattttag acgaaggaac agagagtcta atgagcgact accaagtgat
     7981 tcatcaatat gatggcgaga aacagtttga tgttgttcag caatatttgt tagatttaga
     8041 aaatggctaa atgcacgtgc aacgggtaag acatcatcgt tagaaatatt ggctaattta
     8101 tctaatagct gttcacgggc gttttcatcg ccggcacgag aattgcgaga taacacacga
     8161 atgctttcga tgagttctag aatgtaattt ccttgcgcat cacgaatcgt ttctcccaaa
     8221 aattcaccta acatatggat attatgctga attgttgaat attgctggtt cataaaaaat
     8281 tcctatggta aacataaatt aaattaggtc taaatatgcc gaaaatcgct gaaaatagca
     8341 aatagattta atttaatttt tgaattaaat gataaaacgc aaaaaatagc tgtcaatatg
     8401 tgtttaaaac tgttgttcgg ttttgataac ttgcctgttg tttatgtgct attcactgtt
     8461 attcaagttg gcttatccat taatggtttt aaaggtatta aatggttgga aaatgtttct
     8521 tgtgtgttcc tcatcggtat tcttgcttat atgctttatg ttgtgaatac aaaattctct
     8581 gtagaaatag gcgagcgctt tgccaatatt gaaggcactt ggggaatgcc attctgggct
     8641 gcaactacag cattcttggg tatttattca acaatgattt taaatgcttc cgattattct
     8701 cgccacgtta aaaaaggaac aaccccaaca gcaacaggtg tgatttatgt attatcaatc
     8761 ctccctgtaa ccttatttat gggtttaata gggttgttag ttacggcagc tacaggcaat
     8821 agtgacccaa ttgaagtatt tgcaactgca atggataata aatttttaac agtaataacg
     8881 ttattattca ttgcttttgc acaggttacg acaaacgtgt tgaataatat tgttccgcca
     8941 tcttacattt taatggattc atttaaaatg aaatggtcgc atgccaccat tttagtgggc
     9001 attctttcta tatgtgtaat gccttggaaa ttggtaactg ctgaatcagc agatggatta
     9061 tctttgttta ttaaaattta ctcggcattc ttaggcccta tttttgcggt aatggtcgtc
     9121 gattactaca tcttaagaaa acgtacttta aacgtaaatg acttatataa taaagaaggt
     9181 attttcaaag ggattaactg ggcagcaatt attgcgattg ctatcggttc gttttgctca
     9241 ctgattgtgg tggatctctc ttggtatgtc agtttaattc catcaggctt gagctactat
     9301 attttgatga gggtgttaaa aagttccgaa gctttccgta aagggacagt gctagaacat
     9361 caataagatg acaagcggta aaatttatta aaaattttac cgcttgcttt tacgctaaga
     9421 gttaaattct ttcattagct tatctacggt tttgcagttt tggctaaagg ctctgcaacg
     9481 agaacaaagc attaaatgaa cttgcacatt aacacgttgt tttaatgtca gtttttgttc
     9541 ttgggacaga gaaactaatt cggtaatttg cttacatttt aacatttaac ctccaaacca
     9601 tttttgactt aaacagacct gtaactgcaa tcttgcccga tacagtaagg tatgcacatt
     9661 tgctggtgaa atctcacatt ctgcgcaaat ttcttcggtt tccatttcca aatgggaacg
     9721 catcataaac acccttgctt gatttgccgg cagattattt aggcaaaatt caaatacttg
     9781 ccagaattga gcggaatagg tatggctttc ggtgttcttc cactcattag attgataagc
     9841 atctttatcc caaccgccat tttcgttaaa caatttatcg gcaagatcgt gatcgtcttc
     9901 ttccatcagc tcagatactg ccaccaattt gcctttggct ttcactaaat ctacgatctt
     9961 gttttttaaa attgcaaaaa tctacgtttt taacgcactt tcacctttga agctgtcggc
    10021 atatttataa gcgctgacaa acgcctcttg caccacatct tcggcaagtt cgttattttt
    10081 taactgtaaa aaggcaaact tcaccatttg cagacgaata tcttctagct gcgaggggga
    10141 aatttgccgt aaagccggtt ggctcattgc gtgatccttt ggtaaaaaat tgagagaaac
    10201 taaccgcttg tatcctattt cataaggttt tacccaactt aggggatatt ggtatgaagt
    10261 atttttaaac ctaacatact aa
//
LOCUS       DANLXK010000090         9895 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.091, whole genome shotgun sequence.
ACCESSION   DANLXK010000090 DANLXK010000000
VERSION     DANLXK010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9895
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            19..3177
                     /locus_tag="PXD88_001882"
     CDS             19..3177
                     /locus_tag="PXD88_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL6281432.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIHGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(3211..6102)
                     /gene="glnE"
                     /locus_tag="PXD88_001883"
     CDS             complement(3211..6102)
                     /gene="glnE"
                     /locus_tag="PXD88_001883"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL6281433.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(6274..6555)
                     /locus_tag="PXD88_001884"
     CDS             complement(6274..6555)
                     /locus_tag="PXD88_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL6281434.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            complement(6557..7021)
                     /gene="yciA"
                     /locus_tag="PXD88_001885"
     CDS             complement(6557..7021)
                     /gene="yciA"
                     /locus_tag="PXD88_001885"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL6281435.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(7011..7568)
                     /locus_tag="PXD88_001886"
     CDS             complement(7011..7568)
                     /locus_tag="PXD88_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL6281436.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(7577..8386)
                     /locus_tag="PXD88_001887"
     CDS             complement(7577..8386)
                     /locus_tag="PXD88_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6281437.1"
                     /translation="MAQALLYFTTKYLQSIEGYFMSIKFVDLLQQSWNFMRNQQAFSL
                     FAIVTIVVVQLVFILVSPNSPELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINV
                     LMIFNIQSINDGNYRQFFQNAGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVII
                     ALPVLVVGFYFFIKLSLVIYAYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYL
                     LPGMLSRLFTVFGNDFIGIFITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
     gene            8457..8894
                     /locus_tag="PXD88_001888"
     CDS             8457..8894
                     /locus_tag="PXD88_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL6281438.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
     gene            complement(9179..9601)
                     /locus_tag="PXD88_001889"
                     /pseudo
     CDS             complement(9179..9601)
                     /locus_tag="PXD88_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(9731..9895)
                     /locus_tag="PXD88_001890"
                     /pseudo
     CDS             complement(9731..9895)
                     /locus_tag="PXD88_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019518307.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
BASE COUNT         2904 a         2119 c         2072 g         2800 t
ORIGIN      
        1 tggggagatg gagttgtgat gattaccatc aacgaaaaca ccattgaaca atccgccatt
       61 gcaactttgc aaagcttggg ctgggactac acctacggca aaaaaatttt ggcaggttta
      121 gaacacgaat ggcgggagcg aaccgctgag gtgattttaa agccgctttt ggcgcaagcg
      181 attgcaaaat tcaacccgaa tttgcccgct tgtgaggtgg aaaatgtggt ggcacaggtg
      241 tgccgtgccg acagtggcga tttggcggag cgtaatcgtc aggcttatga ttggctaaga
      301 aatggggtca aaatcactta tcagttgtac ggtgagcagg tgtctgatgt ggtgcagctg
      361 attgattttc agcgtccaga aaataacgat tttcgcattg tcaatcagct ggatattagc
      421 ggcaaaaaag gcaaacgcat tccggatttg attggctttg ttaatggctt gccgctggtg
      481 gtgtttgagc tgaaaaatcc gctcaaagaa aatgccgaca ttggcaaggc gtttgcccaa
      541 ctgcaaacct ataaagatga aatttctgat ttgtttgtgt ttaatcaggc actcgtgatt
      601 tcagacggca ttgtcgcccg catcggttcg ctgaccgctg atttcgaccg ttttacccct
      661 tggcgtgtgg ttgatgaaaa aaatcagagc aaacgcattg tgtttgaaga tgaactcacc
      721 gccctgctgc aaggcgtgat gacacccaaa aatctcttgg attatgtgca gaattttgtg
      781 gtgtttgaac gggacggcaa aaaccgctta attaagaaaa tcggagcata tcatcagttt
      841 tatggcgtga atgaagcggt ggattgcacc ttgcttgccg ccacaggcaa ccgcaaaatc
      901 ggcgtgtttt ggcatacgca aggttcgggc aaatcgcttt cgatgctgtt ttatgcaggt
      961 aaagtattaa gccaaagcag cctgaaaaat ccaactttgg tgttggtaac cgaccgcaac
     1021 gatttggacg gtcagcttta cgccactttt tgcggtggcg aggcactgct caaacaaacg
     1081 ccaatccaag ccgatgggcg agacgaactc cgctctgccc ttgccagtcg ttcggcaggc
     1141 ggtgtgattt ttaccaccat tcaaaaattc ggcttaatgg agggtgagct tgcccaccct
     1201 gtattaaacg agcgggaaaa catcattgtg attaccgatg aagcacaccg ctcacaatat
     1261 ggttttagcc aaaaaatcaa ccacaaaggc gagtatcgtg agggttatgc caagcattta
     1321 cgcagtgcat tgccgaatgc ctcttttatt ggctttactg gcacaccgat tgaacttgat
     1381 gacaaagaca cccaagaagt cttcggtaaa tatgtctcga tttatgattt tgaagatgcg
     1441 gtggaagatg gggcaaccgt gccgattatt tatgagccac gccaaatcag cttaggcgaa
     1501 agtggcgagt tttccaaagt gatggaagag gcacaacaac tgattgatga cgatgaaaac
     1561 agctataact tccgcctgcg tgaaaaactg cacagcgtgg atagccgttt gcaaaaaatg
     1621 gcggaagata ttattgccca ttacgatgag cgtaccaaac agcaagacgg caaggcgatg
     1681 gttgtggtga tgagccgtgc catttgcgtg aaattgtacg aaaaaatcac cgcacttcgt
     1741 ccagaatggc actcaaacga tgtgcttcaa ggcagcatta aaattgtgat gacaagtaat
     1801 gccagcgacc ctgccgagtg gcaaaaacac aatcaggata agaaaacctt agaaaaacgc
     1861 tttaaagacc cagacgatcc gctcaacatc gtgattgtgc gggatatgtg gctgacaggc
     1921 tttgatgcgc cctgctgtaa cacaatgtac attgataaac caatgagcgg acacaacctg
     1981 atgcaggcaa tcgctcgggt aaatcgggta tttcgcaaca aaagccgtga aaatggcggc
     2041 ttgattgtgg attatgtggg cttgaccgat gagctggaaa aagcgatgaa gcagtacacc
     2101 aacgcaggcg gtaaagaaaa gccggtgcgg gacatttcag cggtgctgga aaaaatggtg
     2161 gaacatatca cggtcattca tgggcaattt gccacaccga ttgacggaca agcggttgat
     2221 attgccaaaa tgttgcaaat cagcgaaccg cctaaactgc tcaatgcgat tttgacatca
     2281 gccaaccata ttcttgccct agaccgcatt cagccacctg ataacactgc caaagacaaa
     2341 accccacgca aaaacgcctt tttgcaatcg gtacgcttgg cgaaaaaagg ttatgctttg
     2401 tgtggggcat taaaagcagt tgaaccctat aaacaggaac tggcgtttta tgatgcagtg
     2461 cgtgccacca ttatcaaaaa cagcaccgct cctcgcaatt cttcgagcga aaatgaccgc
     2521 ttgttgcagc ttaccgcctt gatgaatcgt gcggtacagt cggatggtgt ggtggattta
     2581 tttgatttgc tgaaaaaaga ccgcccaaac atcaacctgc tttctgatga gtttttggaa
     2641 acagtaaaaa acagcccaac caaagatttg tggctatcag caatggagcg ttatcttgcc
     2701 tcacaactgc gagagcaaag cggtgccaat cttgccacaa aaaaagcatt tgaacagaaa
     2761 ctcaaagagg cgatgaacca ataccacaac cacaatttaa gcgtattgga aattttagaa
     2821 gagctgatcg ccctcgccaa agagtttgaa gcccgccaaa aacgagggga agcgttggga
     2881 ctaagccctg cggaaatggc gttttatgat gctttggcac gtaatgaaag tgcggtgcgg
     2941 gaaatgggcg atgaggtatt gatgaaactt gccaaagaca ttaccgataa attacgcaaa
     3001 tcggtcaccg tagattggca atataaagac tcggttcgtg ccaaaatgcg aaccttaatc
     3061 cgcattgctc tgcgtaccta taaatacccg cccgatttac aggcggaagc gattgagttt
     3121 gtgttgcaac aagcggaaga gatcgccgga gagttcgcta tcaccgaaac ggcgtaatct
     3181 atattagggc gtgcaatgta cgccctaaat ttatgctaat aacctctgcc acatttcccg
     3241 cacaaatgct cgctcggtgg taaattcact tgcgtccacc acgctgtctt tgcgtaataa
     3301 gtttaggtgg tggattttgt tacgcagtgc ggtgtagcaa tgttgtagct gttcgctttg
     3361 ttcggaactt aaaataccgc attctactgc gctgtcgaaa attcggacat tatccgacca
     3421 tactgccatt ttcgggtgtt ggtggctgtg ggctaatacc aaatattggg cgataaattc
     3481 aatatcggta atacctcctt gatcttgttt aatatgaaat tgctcggctg aatgcgagct
     3541 taaatgttgg tacattttct gtcgcatttc gcaaatttct tggcgtaatt gaccgcttgc
     3601 acgaggctga gcaagcgtgc tttggcggat tttttcaaag gcttgtttga ggttttccgc
     3661 cccaaataca catcttgtcc gcacgagggc ttggctttcc cacgtccacg cttcattttt
     3721 ttgataatgc tcgtaggcat tgaaagtgct gactaaaagc ccagcctcgc ctgatgggcg
     3781 aagtcgcata tccacttcat atagtacgcc ggcactggta ttaaggttaa aaatcgagtt
     3841 aattttttga gccaatttta agtaaaattg atggcttgaa atctcttttt taccgccaac
     3901 agtttggcta tcctctgggg cattatgcaa gaaaaccaag tcgagatctg aattatagcc
     3961 cagttcaatc ccgcctagct tgccgtagcc aataactgca aacccttttt catcagcctc
     4021 taaatgttcc ggcacaccaa agcgttggct gacttgcttc cacgccatat ttaccaccgc
     4081 attaataatc gcttctgcta agtaagtaag atgatcgctg atcttcatta ccagcagcac
     4141 gcctaaaata tcagcagcgg cgatgcgtaa aatttgggtt tgtttgaact gacgtaagcc
     4201 atcaatcagt gcttcttcat cttcttcagg aatgcggatt aaataatcct gcaaggcaga
     4261 ttgatatttt tcaaaagcct gcacgtcggt taagcctcta tggctcatca gctcatcaag
     4321 tagcattgga tatcgagcta tctgttccgc aatcataacc gacttactac acaatgctaa
     4381 aagttgaggc agaatctgct ctttttcgag cattaattcc aaataggtag ttcgggtggt
     4441 gattttatcg acaatattca acacgcgagg caataacaat aaatgatctt cacctttaaa
     4501 aatgctgtcg gcaattctag gcattaaatt gcgtagcacc tctcgccctc ttaccccaat
     4561 cgggcgtttt acccaatctt gaaaggtagt agaaaagtga cggaaaatct ccgtataatc
     4621 attttctgca acctttggat aaccttttag cactgcggat aaatcttcaa ggcgaatgtt
     4681 atagtgcaaa atgtctttcc attcggctaa tttttcatta accggattgc agttggcttg
     4741 tgtttcctct tcaccgataa tttcattaaa aatctggcgt actgcttgtt gatattggct
     4801 caatactgcc ataaattgtt gccaatcgtt aaaggaatgc tccacccaat gcgttttttc
     4861 gctatataga tcttgctgat aatagctttg gcaagcaaat acaaggcggg cttgcgaggc
     4921 ttcatcagtg ggtagggttt gagtttgttt atcgtcaatc gcttgtaata cattttcaat
     4981 ttgacggtaa aaaatatagg cattgtggag cgtttccacc tgcgtttggg ttaataaatt
     5041 taattctgcc aagcgtggta gcacttttaa caggctacgt tcttgtaaaa ttttatctcg
     5101 cccgccacgg atcatttgga aagtttgggc gataaactcc acttcccgaa tcccaccggc
     5161 accaaattta atattatcgg ttaaattacg gcgaaccact tcacggctga ttttttcttt
     5221 catttcacgc aacgattgga ttgcactgaa atccagataa cggcggtaaa caaaagggcg
     5281 gagcatttgc tttaaatagc gatgatttaa attttggcta tcctcgccta aaatttttgc
     5341 tttaatcatc gcataacgtt cccaatcacg cccttgctct tggtaataat cttccattgc
     5401 agtaaaactc agcaccaagg ctccgctatc accaaagggg cgaagtcgca tatcggtacg
     5461 atacacgaaa ccatcagcgg tgatctcatc taatacttta attaaccgct gccccattcg
     5521 ggtaaaaaat ttgctgtttt caatcgattt gcgtccacct tcggtttcac caatatcggg
     5581 gtaggtaaaa atcaggtcaa tatcggaaga aaaattaagc tctcgtccgc ccaatttgcc
     5641 catacctaaa atcagcagtt cttgtgtttc gccaagagtg ttctttggcg tgccatattc
     5701 ggcacagcaa cgctgaaaca accaatctcg agcggctaga atcaggctct cggctaaatc
     5761 cgacaaatgc tgaaatacca attctaccgt cgctaattta tttgactgaa taaagctcag
     5821 acgagccaat tcacggtggc gaaattgccg caaaaccctc cccaacattt cttcattttc
     5881 cactcttgct aatatttttg ctaaacgctc agtataattg cagcaatcat caggcgtagg
     5941 aaacttggca agccattctg ccagtaaatc cggctgtttt tgcaaggttt gatgcacgaa
     6001 attggaaagc gaaatcgccg tcacaagcgg ttgaatttgc tcagaatttt gcaaattggg
     6061 cggtaaattg agttgggata agggaattag ggtggtaagc ataaatttag gctcaaaatt
     6121 gaaaatagat agaattttac gctcgatcaa ttcccctctt tagcaaagag ggcttagggg
     6181 agatttggca gaggtaattt tactctcata cgaaacatta atatcgtaat caaatctccc
     6241 ccagcccctc ttttctaaag aggggagaaa aaattaaaac actcttttaa acggtttaat
     6301 aatcacatcg ctatacacac cggcttccac ataaggatct tggcttgccc attgttgagc
     6361 ttcttcaagt gagttgaact ctgcaattac agttgaaccg gttacgcttg agccgtcttc
     6421 agtcgggtta ggccctgcga ttaataatcg accttctgcc tgtaattttt ccaaacgagc
     6481 caaatgagcc gggcgaactt ctaaacgttt ttccaacata ttgggattat cttgggcaaa
     6541 gataacataa tacatactat tctccttgtt tttcaggggt taaatcaatt agcgataatg
     6601 cttcgtctaa ttcggggtta ttttctctcg gcacagcacg cggtttgcct tctttatcaa
     6661 tcgctacata ggtaaataag gcttcggtta cgagataacg ttcgcgattg ccctcataaa
     6721 cttgtttgat aaagacctcg actttcactt gcatcgaaga acgccctatg tgcattaact
     6781 tgccgtagca gcagaccaca tcaccgactg aaatcgggcg gtggaaaatc attttatcta
     6841 ccgttaccgt aacgactcta ccttttgcca actctttggc taaaattgca ccgcctaaat
     6901 ccatctgcga cataatccaa ccgccgaaaa tatcgccatt ggcgttagta tctgacggca
     6961 ttgccaaagt tcttaaaatc agtttccctt ccggggcttt tccatagggt ttatctttca
     7021 tttttttgtt cctgcttttc agcatctttt aagtaagggt aaaggacgaa accggtaata
     7081 accgttgcga ctaaggttaa gccaataatg ccaaaggatt tgaaatcaac ccaaatctct
     7141 tccgataaat attgactgat ataaatattc agcagcatac aaatcagaaa gaatactgcc
     7201 caaccgaagt ttattttatt ccacactgct tcaggcaact gaatttcttt gcctaataat
     7261 tttttgatta atggtgtttt gaacacaaat tggctcacta atagcaccaa tgcaaacaga
     7321 gcgtaaacaa tggttacttt ccattgtaaa tatttaactt cattaaaata ggcactcagt
     7381 aagccgaaaa agaccaccga gccacccata ataatttgct gtttttcaat tttgccgtag
     7441 agcattttta aggcgatcat ttgcacgatt gtagcgataa ccaatgcgat agacgccatc
     7501 tgaataccgc tcattttata cacgacaaaa aacagaatca gcggaataaa ttcaagtaac
     7561 tgtttcattg atactcctaa cgcactgccg gcatttggcg gtaaacttgg taaaagcgga
     7621 agctgaaaat cgccataaag acgttaatta ccgcacttaa aacaatggta atgaatatgc
     7681 caataaagtc attaccaaac actgtgaaca aacgagataa catccccggt aataaataag
     7741 aaatcacaca aaataaaatc agcggtagca tttttccacg tgataattga agcgtaaatt
     7801 taatactttc cgatagactt ttctgcggtt tctccaataa ataagcataa atcactaacg
     7861 ataatttgat aaaaaaataa aaaccgacta ccaacaccgg caatgcaata atcactgttt
     7921 caggcgatgc cattgcaaaa gatgcaccga gagaaagcgg taacaccatc acaaattgta
     7981 acaacagcac aggtaggaag tgctttaatg cgtttcctgc attttggaaa aattgacgat
     8041 aattgccatc gttaatcgat tggatattga aaatcattaa gacattgatc aaaagattga
     8101 caacacctaa taaaatagtt ggcaatagta tagacaccat tttagaggca tcaatttgaa
     8161 gttgttgcgg ttgcgactcc gccattagct caggcgaatt tggcgacact aaaataaaaa
     8221 ccaactgcac aaccacaatg gtgacaatgg caaacagtga aaatgcttgt tgattacgca
     8281 taaagttcca actttgctgc aataaatcga caaatttaat tgacataaaa tacccttcaa
     8341 tagattgtaa atattttgtt gtgaagtata gcaaggcttg agccaaactg cattaaccta
     8401 ttgtagattt taatcagtta gctaaaataa aagaaaaatt tgaaagagat aatcctatgt
     8461 taagcttatt tgatgcagga cagcgttacc tcaacactct gccgaatcag aaaaaattag
     8521 ccaattttat gccagattac cacattattc gcttggtaaa attttcctct aaagtaatgc
     8581 ctgcttttgc ttgctttgca ttagtttggc aatattgctt taccgatccg acccaatcta
     8641 ttttagccaa ttcggtactt actgctgttt tcgccatttc tattccgttt caagggttat
     8701 attggcttgg aaaacgggca agatcaccgt tatctttatc attattggaa tggtatgagt
     8761 cgcttagaca aaaattaatt tcggcacaag tcaaattaga agaaacacaa gcggtacctt
     8821 ctttccaaga ttttgcaaat ttactcaagc tagcagaaga gacttgggga gatgaatatt
     8881 ttgatgagtt ataaaataaa aaaagcccca cttaaaataa gtggggtaaa acttttgttc
     8941 taattctgga ggtttgaatt actgttttat tgtggggtac tgatcttttt tgcatagaga
     9001 gaaagaaaaa aatttgggcg gaaaaataac ggcgagcccc gtgaatacaa gggttcgccg
     9061 ttattgtttg gttggagcta tgcaaaaaac aaaatgagca ggattagaaa aaaacgagca
     9121 gtttttgcgt tattttttgc ataggtttga tcggttttaa aactatttta aatctgtttt
     9181 aaactaaaga atgcccgatg tgtaccactt gcccgatgat ttgtaggttt tgggcttggt
     9241 ctgctgtaat ctttattaac tcgtactctt ctcggttgtc tgaaataagc tctacaccgt
     9301 cccatagcag ttttacacgc ttaacccaaa cactgtcgcc gttttgtaca atgtaaatat
     9361 tattgtcgcc tcgtatctca ttacgactta aatcaactag tagctggtcg ccattatcaa
     9421 tagtcggata catcgagtct ccacttgccc aaaaaacagc acacttcttg gcattaacac
     9481 caagcgtatg caacaagcta tcagcataag gctcttgtcc atcaggtttt gttacacctt
     9541 cattaaagct cccaaagcct gcagatactt taatagatgc aaaactatca atcattgaga
     9601 ttatgttatt caaaacggtg cctgataatt cagatccttt gttttgctct tcaggtgtaa
     9661 tctctcttac tatgctatcc ttgattgcat ttattccact tttaaatccg agtgcttctt
     9721 gggctttacg aggcaatgaa gttatgtgat attcattccc cccacctttt actccaactg
     9781 catcacgttt tatccagagt tcttttaatg cctttcttgt aatgtttgtt gcttgctttg
     9841 gaaggtcagg caaatccaat tcttctagtt ctttggctga aaaccaaact ttatc
//
LOCUS       DANLXK010000091         9858 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.092, whole genome shotgun sequence.
ACCESSION   DANLXK010000091 DANLXK010000000
VERSION     DANLXK010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9858
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            164..1870
                     /locus_tag="PXD88_001891"
     CDS             164..1870
                     /locus_tag="PXD88_001891"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL6281439.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            1919..2758
                     /gene="menH"
                     /locus_tag="PXD88_001892"
     CDS             1919..2758
                     /gene="menH"
                     /locus_tag="PXD88_001892"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL6281440.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(2807..3484)
                     /locus_tag="PXD88_001893"
                     /pseudo
     CDS             complement(2807..3484)
                     /locus_tag="PXD88_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            3570..4232
                     /locus_tag="PXD88_001894"
     CDS             3570..4232
                     /locus_tag="PXD88_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL6281441.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4222..6150
                     /locus_tag="PXD88_001895"
     CDS             4222..6150
                     /locus_tag="PXD88_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL6281442.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6150..7037
                     /locus_tag="PXD88_001896"
     CDS             6150..7037
                     /locus_tag="PXD88_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL6281443.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            6995..8101
                     /locus_tag="PXD88_001897"
     CDS             6995..8101
                     /locus_tag="PXD88_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL6281444.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8098..9522
                     /locus_tag="PXD88_001898"
     CDS             8098..9522
                     /locus_tag="PXD88_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281445.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            9637..9843
                     /locus_tag="PXD88_001899"
     CDS             9637..9843
                     /locus_tag="PXD88_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL6281446.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3050 a         1987 c         2126 g         2695 t
ORIGIN      
        1 aaaaagagag agtttactaa gtaaagtgtt gctcaataga tagaaatttt cacgaagttt
       61 tacaaaaaca ttccaatttt ctcctaaaaa acttcccaca ataatttcac tttttgctac
      121 aatcctaacc atttatcgaa tttatcaatc agtagagaag aatatgaata ccagttcttt
      181 taatcgcact tgggcaaaag tgattttaag tgcattaatg cgttatggcg taaaacattt
      241 ttgtattgct ccgggttctc gctcaacacc gctcacatta gcggcagtgc aacttcaaca
      301 aacgcaatat gcagagtgcc acactcattt tgatgagcgt ggtttaggtt tttatgcgtt
      361 agggattgct aaagcaaccg acagcccggt tgctattatt gtcacttccg gcacagcagt
      421 agcgaacctt tatcctgcgg tgatagaggc aagcctgagc caccaaaaac tgattattct
      481 ttctgccgac cgcccaaccg aattaatcgg ctgtggggta aaccaagcca ttcatcagca
      541 aggtattttt gccaattacc cggttgccag tgtcaatcta ccgaaagcga acgaggctta
      601 ccacgcaagc tggctggttt cgaccattga gcaagcctgc actacccaag cacaacaagg
      661 cggtgtgttg catatcaatg tgccttttga agagccgctt tacgaagcag acattaatga
      721 aattctaaat acaccttggt tacgcccaat ccaaggctgg ttgaataacg ctcaaaccaa
      781 atggatagac caacaagcga ttcaaagcga agtctcaatg cacgaaaatt gggattactg
      841 gcgaactaaa cgaggggtga ttgtggtcgg caaactgccg ccggaacaag gcacaggttt
      901 aaaaacttgg gcggaaacca tgggttggtg cttgctaagt gatgtgcaat cttgcattga
      961 agccagcctg ccgtatgccg atatttggct ctccaacgag actgtcaaac agcgtttatt
     1021 gcaagcggat atcgtgattc aattcggcac gcaaattgtc agcaaacggg tgaatgaatt
     1081 tttaaaagca ttccaagggg aatattgggt ggtggaacaa tcgcacgatt accataatcc
     1141 aaacgctcat catcaaaccc gttttattgc caaagcacat cactttttgc gggtacaccc
     1201 accacttcgc caaaagccat ggttgcttga gccattggca ttatcgcaat tctgctccac
     1261 tttcatagag caacaagtgg gtggcagctt aagtgaagcc tcacttgcac acaacattca
     1321 agatgtttta gcaattaatg gcaacttatt tatcggcaat agcttatttg ttcgattggt
     1381 tgatgctctg tgcaaactgc cggaaggcta ccctgtttac accaaccgtg gtgcaagcgg
     1441 tattgatggc ttaatcgcaa caatggcagg cattgcaaaa ggtagcgacc gcccgactgt
     1501 cggtgtggta ggtgatattt ccgcattaca cgatcttaac tcaattgcat tgctcaccaa
     1561 aattaaccag ccgaccattt tatttgtggt gaataacagc ggtggtgcgt tgtttgatat
     1621 gttgcctgtt gatagcaaag cgaaagatca atattaccgc cttgctcaca actttgaatt
     1681 tgctcaagtc gccacaatgt tcgggcttga atatatccgc ccgtttactt gggcagatct
     1741 aaaaaccaaa ctcaaacacg cctatgctcg taaaggtgtt accattgtgg aaatcaaagt
     1801 aaatgaacac gacggcagca atatgtataa atcattgcta aaacaaattt cacaggcgga
     1861 aattgcctaa tcacaactgc ccctcgccaa tcctgcgagg ggtaaaaatg tatcgactat
     1921 gctttcctat caatggcacg ctcaacaagg cacacccgtg gttttccttc acggcttgct
     1981 cggctcacaa caagactggc aagctgttct ccaacatttg caaaattttc cgcaaattcg
     2041 accgcttacc attgaccttc cttttcacgg aaatagtaag cacattacct gtgccgattt
     2101 tgccaacctg cgacaacaac tacacgccac ccttgaaagc ctaatcggct cacgaccttt
     2161 ctatttagtc ggctactcac tcggtggacg agcggcactc gattatgtgt taaatatgga
     2221 gaatccgaat ctgcagggcg tggtgttaga aggggcgaat atcggcttaa gcacagaaaa
     2281 cgaccgccag attcgccggc aaaatgaccg ccattgggca aaccgtttcc gtcaagaacc
     2341 catcgaacaa gtgcttgaag attggtacaa acagcctgtt tttgcggatt taagcgatac
     2401 ggaaagagaa tgttatattg atagcagaaa gcacaatcaa ggagagcaaa ttgctcaaat
     2461 gctggaagcc accagcctcg ccaaacagcc tgactacacc gaaaaactca agcagacgga
     2521 taagaatatt gtctttttta tcggtgaaaa ggatcagaaa tttcgcaaaa tggcatcaag
     2581 ccaccaacta ccaacacaac tgattgctaa tgcagggcat aacgctcatc gggctaatgc
     2641 taaaaatttt gtggagaaat tggggttatt gatactccac tccgacagcg acctacggtc
     2701 gcaatcggtt aagcataacg gtgcagctct gctgcacaaa agccccagtg gggcttaatc
     2761 agccgtaggc taaatataac ctagtacggc tcagccgtgc taggtgttag ggctccccct
     2821 gcaaccgttg caataagcga tccatcgccc gataaccaag tgcttccgct aaatgcagtt
     2881 gttgaatatt cgcctcgccg gctaaatcag caatagtccg agaaactttc aaaatacggt
     2941 ggtaggctcg taccgataaa ccgagctttg tcaatgcagt ttctaaaaat agggcatctt
     3001 gtgccgataa ttggcaatct cgctcaattt ctcgggtggt gagttgagaa ttgattttac
     3061 ctgctcgctc aaattgcatt tttctggcta aaaacactcg cttgcgaacc tgctcggtgg
     3121 tctctcctcg attctccgtc ccactttgca atgctccttg tggcaaaagt ggcacttcta
     3181 tagagagatc gaaacggtct aagaaaggtc cggaaaggcg gtttaaatac cgcattacct
     3241 gttggggcga agtgcggtta tgcgtgcctt gataatgccc tgtcgggctt gggttcatcg
     3301 ctgcaattaa ttgaaagcgt gccggaaatt gtactttagc gttggctcgg gaaatcacaa
     3361 tttcgcctgc ctccaacggc tgacgtaacg catcaagcac tttacgttca aattcaggca
     3421 attcatctaa gaacagcaca ccgttatggg caagtgaaat ttcccccggt ttggggatcg
     3481 agccactgta aaaactagaa ataaatgtca taaaaactag aaatagctgt cagattattt
     3541 agaaaacaag aaataggtgt caaattatta tgagaaaaac acatagtttt caacaggtta
     3601 gaaaaattaa acccacttgg atgagtgtat cggggcatat tccatttaga aacggagtca
     3661 gtattcccta tgaatcgact ttagagcgtg attttttgat gtatttcact tatctacctt
     3721 cagtagatga agtcgtctct caaccgacta ccctaccttt cgtcaagaat gggatcactt
     3781 atacctatac accagatttc ttcttgtcat ttacagacgg tcgaaagccg atgttaatcg
     3841 aggtcaaacc gaaagcaaaa tggcagaagc actggaaaga atggaaagaa aaatggaaag
     3901 ctgcaatacg tttttgccaa gaaaacggtt atgtattcca tgtgtatgat gaagatcgga
     3961 ttcgacatct agcgcttttc aatctcaact atgttcagcg ctataagcga atacaacatg
     4021 aacaagaaga tatagatgct attctagccc aagtaaagct gatgggaaat accactattg
     4081 actatttact ctctcgattt tttgcaggtt ctctatatcg catgaaaggc ctacaaatca
     4141 tctatcactt actggcaacg aaacaactac attgcaattg gtttctacca cttaatgaat
     4201 ttaccgaggt atgggggaat aatgatgagt aactctggat ttacagaaaa gcgctatcat
     4261 caccgattag atcggggacg tattattttg caaaaaggta atatttacct aaatagagaa
     4321 gatggagaac agtatgaatt ggttgattat atggatgaac cctcccaact gctcgtacga
     4381 aatctcaaca ctcgtacaac caaagtcgtc agtattcatc agcttgaaaa tttcaaaatg
     4441 aacgagcgaa cggatctttc tgtggatgta accgctatta gtaatgaata ttgggagaaa
     4501 gcccaacaaa aatatgaggc aattaaaccg ttattaggga tggatcaaca tcggccttac
     4561 gcagttaagg ctcgtgcaga agatgttggg gtgaaccctc gtacattata ccgttggtta
     4621 caagcctata attccatagg atctatcgca ggtttagtcg atcaaaaacg tggatggcaa
     4681 caaggaaatt cccgtttaac gccagagcaa gacaagctga tcgtgcaggt aatcaatgag
     4741 ttttacctac ataaacaacg cccaactact gagcaaacta ttagagaaat tcgccgccga
     4801 tgcaaaattg aaaaagtgga aagcccaagc aaagaaacca tccgtatgcg cattttgcat
     4861 atttcagagg aagagcgatt acggaaacgc gggcaacgag aaaaggcacg caacaaattt
     4921 aagccgaagc caaatagctt tcctgatgcg gattatccat tgagtgtggt acaaattgac
     4981 catacaccag ttgacctaat tattgtggat agtaagtatc gtaaaccgat tggccgaccg
     5041 tttttgacgg ttgcgataga tatatacagc agaatgattg ttggttatta cctttcactt
     5101 gatgcgcctt ctgtaacttc ggtggcgatg tgtattgcac gtggtatttt gccgaaagaa
     5161 cgcctactgc ttgatttagg tttgcaaggc tcagaatgga atgcttttgg ctacccagtg
     5221 aaagtgcatg tggataatgg cccagatttt caggctttgg atttatctaa atcttgttct
     5281 gcacacggaa tccatcttga atttagaccg atggggcgac ctgaatatgg cggacatatt
     5341 gagcgtgtta tcggtacatt tatgaaagaa gttcacagtt tagcaggaac aacattctcc
     5401 aacatcaaag agcgtgactc ttacgattcg gaaaaagagg ccattatgac tctcgatgag
     5461 tttgaaaaat ggttggtaca ttacattgtg aatgtttacc acaaacgtgt gcattctgct
     5521 ttaggcattt ctcctgaaca aaaatggaag attggtattt ttggagatga aaatgaagtg
     5581 ggatgtggtt atccgcaact tcctgttgat gaacaaacac tactacttga tttcttgcca
     5641 agtatcactc gtaccattca gcataatggt gtaacaattg acggacttcg ttattacgat
     5701 gttgcgctaa atatgtatat cagtgattca gatgaaagcg gtaaatctaa ggaatttctg
     5761 tttcgccgag acccgcgaaa tatcagcaaa atttggtttt atgatccgaa attaaaacgt
     5821 tacttcccaa ttccatttgc aaatcaggca atgcccgaaa tgagcatttg ggaatataga
     5881 gaggttcgta gccgaattgc gaataaaggt gataaatata tcaacgagca acaagtttta
     5941 gacggtttaa ccgagatgcg tgaaatggtt gctgaatcgg ctcaacggac gaaaaaagca
     6001 cgccgtcagg ctgaacgaca aaaaatgcac aaagcaagta agccaattat tgaaacaaaa
     6061 gtggaaacta aggctgttgt accagtcgta gtaacatcga atttgcttgc tttagatgat
     6121 gagagcttat cttttggtga ggtggactaa tgcaatacga acatgttcat gaaaaattcc
     6181 gccatcttgt gacagcggac aatcaggaga ggattgcgtt cttggacgag ccaagatggt
     6241 taggttatgg tgtcgccaaa gacattatgg ataatttggt ttctttaatg aataaaccaa
     6301 aacgcccacg aatgttgaat ttgttgattg tcggcgattc caataatgga aaaaccacac
     6361 tgatccgccg cttcttcgac ttgtacggtc aggcgtatat cgacagtgat tctaatgcga
     6421 tttaccctat tcttcttgcc gaagccccac caagtgcgaa tgaaaaagaa ttgtacatct
     6481 cattattaga gcggttctac gtaccatata agccgacaga tacgatagcc aaacttcgtt
     6541 atcagactat ccatttgttc cgagaatttc gtgtcaaaat gttggttatt gacgagtttc
     6601 attctctgtt ggttggtaca ccacgcttac aacgacaggt gatgaacgca attaagatgc
     6661 tttgtaacga gctacaaatt ccaattgtcg gtgttggtac tcgtgatgca attcgggtat
     6721 tacatacgga tcgacaacat gccagtcgtt ttgatgttgc ggaattgcca atatggaaac
     6781 tagataagga atttcaaaaa ctcctatttc aattccaagg gattttacct ttgagggaga
     6841 gttcaaatct gcaatctcca gaacttgcta cgaagatcca caccatttca ggtgggaact
     6901 tagggaacgt gcatcgctta ctaacagctt gtgcagttca agccattaca agtggcacgg
     6961 aaaaaatcac cttagacatc attgagaaaa attcatgggt acaaccaaca aacggctatc
     7021 gcaaaataat cggataaaaa aaggtgttat tcatacccct atttattcaa atgaaagtat
     7081 tagctcgtgg ttaattcgtg catcctttga ttgtggtaca gatccactga cttttacagg
     7141 gttttattgg gaaaaacatc ggttgtggac attagattta gatcgtggct tggaaaatat
     7201 tgagccaact atctatgatg atgtacaggc attatcgggt aaaatccaac tttcagaata
     7261 ttccttgttt cgcaggcttt accctataaa tgcagatgaa accttagcta aaggtcaagt
     7321 aagatgggtg attccacgtt cggcaaggaa tagaacccat cacattggtc aacaatattg
     7381 tcctttgtgc ttggatgagt cgccacattt acgcaatgat tggcggttag cgtggaattt
     7441 tggttgtctc aagcataata tgatgttggc gaacagatgt ttttgttgtg gtacattgta
     7501 tcaaccccat ttactatcag cggaaaagag gcatttgaat cattgtcatc aatgtggtgg
     7561 gaaactggaa caaggcacaa tggaaatgag tctagctgaa aagctgacat tgcaaggtat
     7621 taatcaggta ctcgaaaaag attcaggcat ctgttttgga tacaaggtgt cgggtaaggt
     7681 gtggtttgat atgctccgct actgcatcaa cttattgaga cgtgcatcag acagaccaaa
     7741 tcatgcctta gcaaaatttg tagttaatct acagattgat gttgaaaata tatgtagccc
     7801 caaaacagga ctttcttttg aacaacttcc gctaggtgaa cgtacaaatt tacttgtgaa
     7861 tgcctatcat attttgggaa tggaagcaga ttctattcgt agtgcaattt atttgtgtgg
     7921 cggaacacaa aaaaccttta tgtttgaaaa atatcctgat ttttggcaag aatttatggc
     7981 actagcaccc gcaggcccaa atagaacacg aaaacgcacc aagccccaaa atgagtctat
     8041 cacagcaatt aatcgccgtt gggagcgttt gaaacgcaaa ctacacttaa ataacgaatg
     8101 aaaattaatg taataaaacc acaggaagaa ccttgctccg cttgtggcaa aatttctcgc
     8161 atttggcgca gatataatgg cgaaggctac tgtgccaatt gctatgctaa gtggtttccg
     8221 aaaaaagagt gcagctgttg ccatcaacca aagcgtatct atttgagttc aacagtatgt
     8281 tgggattgcg aaaaacagac tgactgtgta cgttgcggta aggctgcggg tacattcaaa
     8341 attggtaaaa ttacccgtta tggtgcagtt tgtaatgtgt gttcacgtta ttttcgtgaa
     8401 gaacgagaat gttttgagtg tggtcaacta tctagaacta tgcttcgagc atcagagtca
     8461 ggtcatagcg agctactctg cttgaagtgt tttcaaaaat atcggtttgc gacttgtaaa
     8521 aactgtcgcc gttatcgcaa agttcatgac cgtgataatc agctttgtcg aaaatgtagt
     8581 gagcaacgaa cttcacaatg cccgaagtgc aaacaggata tgcctgcggg atatggtaat
     8641 atttgtgcag attgttctag gcgaactcta ctgttcaacc ttattcgaat gaatgtgcat
     8701 ttattccgcc acaaaaaagt gaaaagagca tataaaaagt tcattttttg gtatctcgca
     8761 aagtgtggcg tgagtgttgt gctgaaaaaa tcagacgacc acgtcctctt ttttatgcgt
     8821 tgcgatgaaa attggggcaa cattccagac taccgtgagt tggttacatt ctttaaaccc
     8881 aatggattac ggacgcattt gactgtgttg cgttggttgc ttgataccaa tcaagtcaaa
     8941 gtagatgaga gcttaaaaga ggaaatggcg gggttggaac gtattcaatc cctatttaac
     9001 aaattaagta actctgtacc ttgtattgca aactactaca cgcagttaca acataaatat
     9061 gaggcgggca aaacatcact gaaatctgtt cgattagctt tacaacctgc gattgatttc
     9121 atcagttcag aatctgtctc gttactgccg actcaagtac aactgaatag ctatcttgtg
     9181 gcaaaaacgg gacagattgc tgctattaca ggctttataa accacctgaa ccgagaatat
     9241 cattgtgaat tagaaattga ccgctccctc attcaaaaga tgaaagaaaa gcagttgaag
     9301 cagcaagcaa aacagcgatt agcgatactc tacaagcaag aaaaactaag tatcaaagag
     9361 caaaatgagc tactctcagt cgtattactg aatttgcaca acatttggat aaaatcaccg
     9421 aaaaaattaa gtatttcaga gatagacggt atagcctact atgttgataa tgagaaaaaa
     9481 tactttatac caaaagacat tcacatacgc ctgatggaat aagctgtcgt caatttttat
     9541 ttttgcgatc tgtgtcgaga aaataatatt tatgaatcga cagatgaaat aatattgata
     9601 aagtctcttt gtgtgttcaa caaacaggag ataaatatga cattaaaggc tcaatttcgt
     9661 gaatggctta aaaaagagca agaacatgat gaaatgatag ggttcgccca tatcccttgc
     9721 attttatcta aagtggatag caaactggcg attgttagcg gaaatgctta tgagaagaaa
     9781 tatctcagat attggatcaa gtgttttagg ttcgatagaa atatcagcaa gtatattaaa
     9841 taggttaaat atctagct
//
LOCUS       DANLXK010000092         9753 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.093, whole genome shotgun sequence.
ACCESSION   DANLXK010000092 DANLXK010000000
VERSION     DANLXK010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9753
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXD88_001900"
     CDS             complement(115..1830)
                     /gene="proS"
                     /locus_tag="PXD88_001900"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL6281447.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
     gene            complement(1994..2155)
                     /locus_tag="PXD88_001901"
     CDS             complement(1994..2155)
                     /locus_tag="PXD88_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281448.1"
                     /translation="MEQKLNNVFGGIMFKEKDYDEYLEAKVKKGQIFTLEQANAEWQE
                     IIEQIEREN"
     gene            complement(2208..4091)
                     /gene="htpG"
                     /locus_tag="PXD88_001902"
     CDS             complement(2208..4091)
                     /gene="htpG"
                     /locus_tag="PXD88_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL6281449.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
     gene            4255..4542
                     /locus_tag="PXD88_001903"
     CDS             4255..4542
                     /locus_tag="PXD88_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL6281450.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            4542..4970
                     /locus_tag="PXD88_001904"
     CDS             4542..4970
                     /locus_tag="PXD88_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL6281451.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            4974..7055
                     /gene="recG"
                     /locus_tag="PXD88_001905"
     CDS             4974..7055
                     /gene="recG"
                     /locus_tag="PXD88_001905"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL6281452.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(7077..8011)
                     /locus_tag="PXD88_001906"
                     /pseudo
     CDS             complement(7077..8011)
                     /locus_tag="PXD88_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(8064..9716)
                     /locus_tag="PXD88_001907"
     CDS             complement(8064..9716)
                     /locus_tag="PXD88_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL6281453.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
BASE COUNT         2616 a         2350 c         2059 g         2728 t
ORIGIN      
        1 cacgcattct atttcctata ttctaaaaat aatagagtat tttatacttt agttaaatac
       61 tcgctgcttt atattaaagg gcgtatttta tacgcccaat tttgttattt ataattaagc
      121 ctttacattc gcttttaaga acgcaagtaa gctctctttg gcgatcatct gtttttcacc
      181 gctgcggcgg tttttgtatt cgatttcgcc gttctcgagg tttttctcac caataaccac
      241 catatgcggc acaccgataa gctccatatc cgcgaacatc acgcccgggc gttctttacg
      301 atcatcaaaa atcacctcaa cgccttgagc ttttaagtta gcgtataact cttcagcgaa
      361 tgcctgcact ttttccgatt tgtgcatatt catcggcaca atcgccaccg taaatggcgc
      421 catttcatca caaggccaga taataccacg atcatcataa tgttgttcaa tcgcagctgc
      481 caccacacgg gtaacgccga taccgtaaca acccattgtc atcactagcg gtttaccgtc
      541 ttcaccttgc acagtggctt tcattgcttc tgagtatttt ttgcctaatt ggaaaatatg
      601 ccctacttca atacctcgtt tgatttgaag tgtgccttta ccgtccgggc ttgggtcgcc
      661 ttccaccaca ttgcgtaaat ctgcaatttc cggcacagca acatcacgct cccagttcac
      721 gttaaagtag tgtttgccat caatattcgc accgcagcca aaatctgaca tcaacgccac
      781 tgagcggtca ataatcaccg gaatcggcat attcaccaca cctaacgagc caacaccggc
      841 accgattttg gctttaattt ccgcttcatc ggcaaactca agcggatcag ccaccaacgg
      901 gtgtttttga gctttaattt cgtttaactc gtggtcgcca cgaatcacta acgcaattaa
      961 cggttgctct tcagttgccc ctttcaccac taaggttttc accgtttttt caatggctaa
     1021 accgtgattt tctactaatt cattgatggt tttcgcattt ggcgtatcca ctaattgcat
     1081 ttctgccgtt ggtgcttggc gttcacccac cgcaaccgct tcggctaatt caatattggc
     1141 agcaaaatct gattcggttg aaaataccac atcatcttca ccgcttgagg ctaacacttg
     1201 gaactcgtga gaggctgaac cgccgataga gccggtatct gcctgcaccg cacggaaatc
     1261 taagcccaaa cgggtgaaaa tattgctgta aacctgatac atcacatcat aggtttcttg
     1321 caggctctct tgtgtggtgt ggaaagaata ggcatctttc atcacaaatt cacgcgaacg
     1381 cattaccccg aaacgagggc ggacttcatc acggaatttc gtttgaattt ggtataaatt
     1441 cagcggaagt tgtttgtacg aagaaacttc acggcgaacc aagtcggtaa tcacttcttc
     1501 gtgagtcggg ccaagcacga aatcacgctc gccacgatct ttaaaacgta ataattccgg
     1561 gccgtaatca ttccaacgac cggattccac ccataattcc gccggctgaa ccaccggcat
     1621 taatacctcg atagccccgc ctttgttcat ctcttcacga ataatatttt ccactttttt
     1681 caacactttg atcccggtcg gcaaccagtt gtataaacct gacgccatcg ggcgaatcat
     1741 tccggcacgc aacattaatt gatggctaac tacttgtgca tcattcggca tttctttaag
     1801 ggttgaaaat aaatattgac ttgtacgcat tgctattcct attcttttta aactttgaaa
     1861 cctgaaaaaa tctgcttatt ttaaaacaaa gcggttaaat tttcaggaaa ttttgcaaaa
     1921 tcctataaaa aaataaccgc ttgtaagcgg ttattttgtt ttaactaagg gtattttctt
     1981 aaactgtgta tgcttaattt tctcgttcaa tttgctcaat aatctcttgc cattcggcat
     2041 ttgcttgttc aagagtaaaa atctgacctt tttttacttt agcctctaaa tattcatcat
     2101 aatctttttc tttaaacatt attcccccga atacattgtt taatttttgt tccattatat
     2161 attgaatatg gaaaaacgga aacctagatt tccgttttta gtaatggcta gcccaacaat
     2221 ttatttaccc gtttaataaa ggctgtcggg ttttccaacg tgcctcgttc agcaagcaga
     2281 gcttgttcaa acagcagttc aatccaatcg gcgaactcgg cttcatcggc aagatcagct
     2341 acttttttca ccattgggtg atctgggttc agctcaaaag tatatttcac ttctggtgct
     2401 tgttgcccca ttgctgcaaa cagttttgcc atttgggtgg tcatttcatc gctgtcagtg
     2461 gaaaccactg ccggtgtgtc ggttaagcgg tgagtcagca ccacgttttt gacccgttca
     2521 ccaaagtagc ctttcgcccg ttctaagaac gaaccaaact ccgcctgttg ggctttttgg
     2581 ctctcttctt cctgcttgtc ggcaagctcg cctaagtcta agtccgactt ggtaatgctt
     2641 tgtagcggtt tgccgtcaaa ctcggtgagg tggctaacca accattcatc aatgcggtca
     2701 gaaagcagta gcacctcaat gccttttttg tggaacagct ctaagtgcgg gctgttttta
     2761 gccgcttggt agctgtctgc ggttaagaag tagatcgctt tctgcccctc tttcattctt
     2821 gcaatataat cggcaaaact gaccgcttgt tcgctgtcat cacgctgggt ggaggcaaaa
     2881 cggagtaagc ctgcaacctg ttgtttgttg gcaaagtctt cgcccacgcc ctctttaagc
     2941 accacgccga acgcttgcca gaattgggca tatttttcgg catcgtcttt cgccaatttt
     3001 tccagcagtt gtaacgcacg cttggttaag gcagaacgga gcgattgggt aactttattc
     3061 tcttgcagaa tttcacggct gacgttgagc ggcaggtcgt tggtgtcgag caagccacgc
     3121 ataaaacgca agtagttcgg cataaagact tccgcatcgt ccataataaa tacacgctga
     3181 acgtagagtt tcaagccgtg tttttgctcg cgttggaaca gatcccacgg ggctttgctc
     3241 ggcacataca gcaagctggt gtattcttgc ttaccttcga ctttattgtg cgaccaaatc
     3301 agcgggtcgg caaaatcatg gctgaggtgt ttgtaaaatt cggtgtactc ctcgtcacta
     3361 atctcatttt ttgagcgtgt ccaaagcgct tgagctttgt taattttttc ccatttttga
     3421 ccgcttgctt tgccctcgtc atcgtattca ttggtctgaa tttccaccgc caggccgata
     3481 tggtcggagt atttgccgat aatctcacgc aaacgccatt cgtttaaaaa ctctttttcg
     3541 tcctcacgca agtgaagaat gatttccgtg ccacgctctt ttttctccag atcggcaacg
     3601 gtgtaatcgc cctcaccggc agattcccaa atcacgcctt gctcggcagg cactccggcg
     3661 gcacgggttt tgactgtcac tttatccgcc acgatgaaag aagagtaaaa gcccacgccg
     3721 aactgcccga taagctggct gtctttggct tgatcagtgc cgagtgcgtt caaaaattct
     3781 ttggtaccag attttgcaat cgtaccgaga tggtcgatca cctgctcacg ggtcataccg
     3841 ataccgttat cggcaatcgt aatcgtaccg agtgtttcat caacagagac acgcacacgc
     3901 agttcgccat caccttcata caaagccggc tcggaaaggg ctttaaaccg caatttatcg
     3961 gcggcgtcag aggcgttgga aataagctca cgcaggaaaa tttctttgtt ggagtaaagc
     4021 gagtggatca tcagttgcaa taactgtttc acttccgact ggaagccacg ggtttcttga
     4081 ttatttgcca ttgtgtattc ctttattcat taaaaaacag ggaatagatg gggcaagtgg
     4141 tcagattttc aagatttttt gcaaaatatc tgttgccaaa tagcgaatta attgaaagat
     4201 attactacat ttaataaaat acactcatct ttttactaca ttttggagag cgatatggca
     4261 ataaccatta cttccagaga atttaatcaa aatgccagca aagtgttaaa aatggcagaa
     4321 aaagagccgg tttttattac caaatggggc aaaatcgtca atgtggtgtc tagttatatg
     4381 gattatcagc agaaaaagcc tagcgagcca agctttgaag agctattcgc ctcttccgaa
     4441 aatgaggatg tgagcgatga attttggcaa gagtttgaac aaacattggt tgaaatccgc
     4501 aaaagcaata aaccaagacc tgttgatttt ggagatgagt aatgtatcgc tacctttttg
     4561 ataccaatat agtttccgag ctttataagt taagaaatga caagatggat gtcaatgttc
     4621 gccagtggct gagaggggtt aatcctagcc agaccaatat cagctgtatt acgttatctg
     4681 aaatcaaaac aggtattttg ctgaaagccc gcaaagacaa agaacaatca gaccgattaa
     4741 atgattggtt tgaaaataat gtattaaagg cttatcaaac aaaagcgttt gtggtgaata
     4801 acgacattgc tctattggca tcagagtacc atattcccaa taaaatggat ttaaatgatg
     4861 cttatattgc ggcaaccgcc aaataccaca atctgatttt agtcacccgc aacaccaaag
     4921 attttatccg ttgtgatgtg cgtttattta acccatttga aaccgcataa ataatgagtg
     4981 aacaattatt agacggcgtg ccattaaccg ccctttccgg cgtaggagcg gcaatttccg
     5041 aaaagttaag tcgaatcggc attaataatg tgcaggattt actgtttcat ctgccaatgc
     5101 ggtatgaaga tcgcacccgt attaccccga ttgctgatgt tcgcccggaa agctttgcca
     5161 ccattgaagg ctatgtacaa cttaccgaag tccagtttgg taaacgcccg attttatcgg
     5221 ttacactctc cgacagcacc agcaaaatta tgcttaaatt cttcaatttc aatgctggaa
     5281 tgaaaaatag ccttgccacc ggcgttcggg taaaagcctt tggggaaatt aagcgtgggc
     5341 gatttatggc ggaaattcac caccctgaat atcaaattat tcgggataat caaccgcttg
     5401 tactggctga aaccctgacc ccgatttact ccaccactga ggggttaaaa caagcctcgc
     5461 tgcggaaatt aaccgagcaa gccctcgctt tattagagaa agtgaaagtc gccgagctgt
     5521 tgcctgatga atacaatccg cacaaataca gcctaaaaga agcgttgcag ttattgcacc
     5581 gcccaccgcc gacgatttct gccgaagtct tggaaaaagg tgaccaccct gctcaaaaac
     5641 ggctgatttt tgaagaactg ctggcacaca atttagcgat gcagcaactc cgtttagggg
     5701 taaaacagca atatgcagag gcacttactt accaaaccga tataaaacag cgttttctcg
     5761 acagtttgcc ttttaagcct actcacgcac aaagccgagt aaccgcagat attgagcaag
     5821 atcttgccaa accacacccg atgatgcgac tggtacaagg cgatgttggt tcaggtaaaa
     5881 ccttagtagc cgccttggca gcactattag cgattgataa cggcaagcag gtggcattaa
     5941 tggcaccgac cgaaattctt gccgaacagc acgccaataa ttttgccaac tggcttaatc
     6001 cctttgggat tgaggttggc tggcttgccg gtaaagtgaa aggcaaggcg agaaccgcac
     6061 aacttgaggc aatcaaaaac ggtgatgtgc agatgattat cggcactcac gccctgttcc
     6121 aagacaatgt ggaatttcac catttagcgt tggtgattat tgatgaacaa caccgttttg
     6181 gcgtacacca acggctgacc ttgcgggaaa aaggagcgaa agaaaataac tatccgcatc
     6241 agctcattat gacggcgacc cccattccga gaacgctggc aatgacggtc tatgctgacc
     6301 tcgacacctc aatcattgac gaactgccac cgggtagaac gccaatcacg actgtggtga
     6361 tttctgaaga tcggcgagca gaaatcgtcc aacgggtgta ccaagtctgt aagcaagaac
     6421 accgccaagc ctattgggtc tgcaccctga ttgatgaaag cgaagtgttg gaggctcaag
     6481 ccgcggcagc gattgccgaa gatttacagc gagccttgcc ggatttacgc atcgggttag
     6541 tacacggacg gctgaaacca caggaaaaac aagcgattat ggcggaattt aaggcagcga
     6601 atttagattt gctggttgcg accaccgtaa ttgaagtggg agtggacgtg ccgaatgcta
     6661 gcctaatgat tatcgaaaat tccgaacgac tcgggctggc tcaactccac cagttgcgtg
     6721 gacgtgttgg gcgaggggca accgcctcgc attgcgtctt aatgtacaaa ccgccgctcg
     6781 ggaaaatttc cagcaagcgg ttacaagtga tgcgtgatag ccaagacggt ttctacattg
     6841 ccgaaaaaga tttggagatt cgaggcacag gcgaaattct cggcacaaaa cagaccggaa
     6901 tggcagaatt taaggtggcg gatttaatgc gagaccgcaa aatgattccg ctggtgcaac
     6961 gttacgccaa gcaaattatt agcgaaaatc aaccgcttgc agaggcgtta attaagcgtt
     7021 ggttagacaa caaggcggaa tataccaacg cttaaccggc aagcgggtta tttagattac
     7081 ggcaggtttt tcaccgattc aattaccaaa tcccaaaagc gggatttgtc taattttttt
     7141 gctacccaag tattacactg ttttggcggg tagcggaaat ccgccaccgt catacccagt
     7201 gtatgcgtgc ctgttagctc aatattgacc ggcacttgct gaacttcaat caggcttggg
     7261 tcaatcacat acgccaccgc acaggcatcg tgaaccggtg gagcatcaaa gccttgagcc
     7321 tgtttataca ttttggcgaa gaacgccagc aattccacca caaactgccc cgatttgctg
     7381 tttaatgcct taaagcgttc aaccacatcg ggggtcgcaa gtgcttggtg agttaagtct
     7441 aagccgacca tcgtcacctt ccaaccggca ttaaacacaa tatgagcagc ttccgggtca
     7501 attttaatat taaattctgc caccgcactc cagttgccgg tgtgataacc tccgcccatc
     7561 agcaccactt ctttcactct ttcaataata cggggctcaa ggcgggcagc tagagcaata
     7621 ttggttattg cccaccggtc ggcactaagg taatgctttt ctccgggtgc gacattatca
     7681 aatcaataat taattgagcg gcgtgttttt tctcaaattg tcgggtagat tcagggagta
     7741 caggcccatc cattcccgaa tcaccgtgaa tatccggggc attttccact tcacgcacca
     7801 gcggtctggc acaacctttg gcaaaaggaa cgttgcaaat atgagcaatt tccgcaaccg
     7861 ccaacgcatt acgcgatact ttttctaagg tttgattacc taccaccgta gtcactgcca
     7921 acaaatcaat attcggattc ccccaagcga gcatcatcgc aatcgcatcg tcatgccccg
     7981 gatcacaatc taaaataatt ttttgagcca ttattgtctc ctttaaaaaa gggagagcct
     8041 aagctccccc tcaattaatg ccattagcaa tcttgtttgc cgtattcttc ttggcgaagc
     8101 agcgaacgca cactttcgtc aaactgagcc agcacttgct ctgcgttttc agcgtctgtg
     8161 ccacgagcat ctaaatagaa tttaattttc ggctcagtac ctgaagggcg agcaatcaaa
     8221 cggctgccat tttccaacac aaacactaaa atgtcatttt ggcgtgtggt tttggtatgg
     8281 tcaataaact cagccacttt aaagccacca atttcgcttg gaggattgtt gcgtaacgcc
     8341 gtcattaatt tgccgatttc ggctaaatca caaactctga tcgaaatttg accgcttaca
     8401 taagccccga actcttgtac aaactcggtg gtgtaatccg caagggtttt accttcttgt
     8461 ttgaggctgc acactaaatc taagaacata atggcagcgg aaatgccgtc tttatcacgc
     8521 actttgtctg ggtcaaccaa ataacctaag gcttcttcaa agccaaataa taggttttca
     8581 acttttccga tatatttaaa gccggttaag gtttcttccg agcttaaacc atattttttc
     8641 gcaatttcag ctaacgccgg agaggatact aacgagcaag ccaacacgcc ttgtttacct
     8701 tgtgcgtgga attgtttggc taaataccag cctaagaaac agccgatcac attgccatgc
     8761 agtggtttcc agttgccttg agcatcaggc acggctaccg ctaaacggtc agcatccggg
     8821 tcgttggcga taataaattc ggcatttttc tctttcgcca atttaatcgc taaatctaac
     8881 gcccctttct cttccgggtt cgggaaatta accgttggga acgaaccgtc cggctgaatc
     8941 tgctcactaa ctaaatacgg ttgcggtaag ccggcttttt ctaatgtttt gcttaacact
     9001 tcatagccca caccgtgcat tgcagtgtaa acgtagttta tttcggcttt tggccgtttg
     9061 gctagtgagg cggttttctc aatataagca tttaccactt catcgtctaa caccgtgaaa
     9121 tcttggctac gaggtaaatc acgaatatcg cctgctgcta ctttatcaat cagagcagca
     9181 atttctttat ctgccggcga aacaatttgt ccgccaccgt tggctttacc taaataaact
     9241 ttatagccgt tatcttccgg tgggttgtgg ctggcagtta ccatcacacc ggctgtggta
     9301 tcaaaatatt gaatcgcata ggcaagcact ggtgttggca atttgcgagg aagcaggtac
     9361 gttttaatgc ctgccgctgc cataatttca gcggtgtcac gggcaaacac atcggaattt
     9421 ttacgaccgt cataaccaat aacaattgac ggctctttat cataaccttt aataaaccca
     9481 gctaaaccgc tggcagcttg tgccaccaaa acacggttca tacccattga acccgcttgt
     9541 aagcgaccac gcaaaccagc cgtaccaaac tgtaaacgtc cgtcaaaacg ggctgttaat
     9601 tctgcttttg ctttctcgtc cgattctgcc gcttgaatta actgctctaa ttccgcacgg
     9661 gtctctgcat ccgggtcttg ggctaaccaa ttttgtgcaa cttggaaaat agtcattttt
     9721 tactcctatg taatttaaaa actctgttta gat
//
LOCUS       DANLXK010000093         9720 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.094, whole genome shotgun sequence.
ACCESSION   DANLXK010000093 DANLXK010000000
VERSION     DANLXK010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            96..1574
                     /gene="fruB"
                     /locus_tag="PXD88_001908"
     CDS             96..1574
                     /gene="fruB"
                     /locus_tag="PXD88_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL6281454.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            1588..2532
                     /gene="fruK"
                     /locus_tag="PXD88_001909"
     CDS             1588..2532
                     /gene="fruK"
                     /locus_tag="PXD88_001909"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL6281455.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            2558..4222
                     /locus_tag="PXD88_001910"
     CDS             2558..4222
                     /locus_tag="PXD88_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL6281456.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            4389..4907
                     /locus_tag="PXD88_001911"
     CDS             4389..4907
                     /locus_tag="PXD88_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL6281457.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(5060..5923)
                     /gene="rarD"
                     /locus_tag="PXD88_001912"
     CDS             complement(5060..5923)
                     /gene="rarD"
                     /locus_tag="PXD88_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6281458.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            6101..6685
                     /locus_tag="PXD88_001913"
     CDS             6101..6685
                     /locus_tag="PXD88_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL6281459.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            6767..7225
                     /locus_tag="PXD88_001914"
     CDS             6767..7225
                     /locus_tag="PXD88_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL6281460.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            7222..8079
                     /locus_tag="PXD88_001915"
     CDS             7222..8079
                     /locus_tag="PXD88_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL6281461.1"
                     /translation="MMKSLCKFLSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANCAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     HGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFDRGSGGFGGGFGGGFGGSRGSGDSFGGGSS
                     GGGGAGGSW"
     gene            complement(8194..8673)
                     /gene="ispF"
                     /locus_tag="PXD88_001916"
     CDS             complement(8194..8673)
                     /gene="ispF"
                     /locus_tag="PXD88_001916"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL6281462.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(8675..9358)
                     /gene="ispD"
                     /locus_tag="PXD88_001917"
     CDS             complement(8675..9358)
                     /gene="ispD"
                     /locus_tag="PXD88_001917"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL6281463.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            complement(9376..9654)
                     /gene="ftsB"
                     /locus_tag="PXD88_001918"
     CDS             complement(9376..9654)
                     /gene="ftsB"
                     /locus_tag="PXD88_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL6281464.1"
                     /translation="MRLLITFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENT
                     KLTSRNKLIEAEIYDLKNGVDALEERARLEREMVKENEMFYRIVPKNK"
BASE COUNT         2922 a         2090 c         2031 g         2677 t
ORIGIN      
        1 atatttttag ttggctataa cggtttagca aaatatagag taaactaacc ataacattac
       61 agtttaaaaa tcaactttaa atccaaggag ctaaaatgct taatttatcg gcaaaaaaca
      121 tccgtttaaa tggttcagca agcaacaaag aagaagttat ccgttttgtt gccgccgaat
      181 tagtcgccaa gggcaatgta gcagccggct atgaagtcgg tatgcttaat cgtgaaaccc
      241 aaacctctac ttttttaggt aacggaattg ctattcccca cggcacgctt gatacccgtg
      301 atttagtcaa agaaaccggc gtgcaaatta tccaacttcc gcaaggcgtg gaatggggcg
      361 aaggcaacac tgcttatgta gttatcggga ttgcggctaa atcggacgaa cacttaacct
      421 tactccgtca actcaccact gtattaagtg atgaagaggc tgctgccaca ttagcgaaaa
      481 cgcaaaattt agatgaattt attgccgtat taagcggtaa gaaaaacctt cctgccttat
      541 ctcaagagct gatttctctg aatatcgaat cttcaagccc tatcacttta tcagccatta
      601 acgccgcaaa actacaagag caaggctatg tttcccaagc attcatcagc gatgtggttg
      661 ccaacaaagc gttacattta ggcaataatc tatttgtggt ggattccgcc aaaggcaacc
      721 aagctaacgg tatcgctatt gcccgtaata cgcaaggtca aaccctacta actgtggcag
      781 aaaccgacaa tgctctacag ccactattaa ctcaattatt aaaaccagaa gtaagaagcc
      841 agtttgctca tttctctgcg gagcaaatgc ttggtttatt aaaaggcgaa agcgtagctt
      901 caacccctgt aaccaatgtc gaagcgagtg gcaaccaagt ggttggcaca ttcaccattc
      961 gtaacgacaa cggcttacac gcccgcccgg ctgcggtgtt agtacaaacg gtgaaaccgt
     1021 tctcctcaaa aatcagcgtt gaaaatttag accgcaacac tgcaccggca agtgcgaaaa
     1081 gtgcaatgaa agtagtagca ctaggggcaa gccaagggca tcgtttacgc tttgtggcag
     1141 agggagaaga cgcccaacaa gcgattgagg cattacaaca agcaattatt aacggcttag
     1201 gcgaaagtgt ttcattcgta ccggcggtgg cagatacgat tgaaagcatt gctgtttcag
     1261 caattcctgc ggaagaaact gcgactgctg tcgatgccaa tacgaaagaa gcaacttttg
     1321 taattaaaaa cgaacacggt ttacacgctc gcccaagtgc ggtgttggtg aatgaagtga
     1381 aaaaattcaa cgccaaaatt gaagtgcaaa atgttgataa aaattcaccg cttgtaagtg
     1441 ccaaaagctt aatgaaaatt gttgcccttg gcgtaaccaa aggcacgacg ctacgctttg
     1501 tggcaagcgg tgatgatgcc gaagtagcac ttgcggcaat cggtgctgcg attgaagcag
     1561 gtttaggcga ataagcgagg aatcattatg cgtattgcaa ccgttaccct caaccctgcc
     1621 tttgatttag tcggcaaact tcaacgtatt gaaatcggcg aagtgaacac cgtagaaacc
     1681 cttggtttat accctgccgg caaaggtatt aacgttgcta aagttttagc tgacttaggc
     1741 acaaaacttt cggttaccgg ctttttaggc gaagaaaatc aaggcgattt cgtaaatgcc
     1801 tttaaacaca atgatttggc tgatgaattt taccgtatta acggtaaaac ccgcattaat
     1861 gtcaaaatca ctgaaaccga ggctgatgta actgatctga actttctcgg ctttgaaatt
     1921 tcggaaagcg attgggaaaa attcgtcaca ttatctcatc agtgggaaag caaatttgac
     1981 ttagttgcag tgtgtggatc tctccctcgt ggcgtaacgc cggaaaaatt tgcttcttgg
     2041 ttggaatctt tacaccgcca aggcttaaaa gtggtgttag ataccagcaa tgcggctctc
     2101 accgccggct taaccgctca cccttggtta gtaaaaccaa accgccgaga gctggaagtg
     2161 ctggtcgggc attcactcaa ctcaatcgaa gagattatta gtgcagctaa acaattacgt
     2221 tcccgtggta ttgaaaatgt aattatatca atgggcgaac aaggctctct ttggctaaat
     2281 cacgaaggcg tgttacaagc ccgcccacca cgttgcgaaa atgtagttag cactgtaggt
     2341 gctggtgatt caatggttgc cagcttgatc tacggcttat ctcaaggttg gagcaaagag
     2401 cagaccttgc gttttgcctc agctacttct gctctagctg ttgttcaaag taacgttggg
     2461 attgcagacc gtgcggcgtt agacgatatt attaaacaaa ccgacattac cgtgatttca
     2521 gaaaatcatt aaacctcaat caaaggaaca aaccaatatg aatatttctt ttgtatttcc
     2581 tcaaacacta ggcaacgcac gccgtttctt agtgaatgaa atgttatctg ccgctgccaa
     2641 gcaacaagga cacaatgttg tggcggcaaa ccaagctgat tttgtggtgt tattcgataa
     2701 cgcaattcca caagaagctg ccggcaagca aggggcaatt ttggacttag aacaagcctt
     2761 tgctcaacct gaagccagtc tcaaacaagc ggtcgaaaat gcacaaactt ttgcaaatgc
     2821 taccgcaacc actgcggttt cagcggtttc atctggtgtg aaaaatatcg ttgctgttac
     2881 cgcttgccca actggcgtgg ctcatacttt tatgtctgcg gaagcaatcg aaaattatgc
     2941 caaagcacag ggttggaaca tcaaggttga aacccgtggt caagtaggag caggaaatcc
     3001 aatttccgcc gaagaagtcg cagcggcaga tttagtcttt gtagctgccg atattgatgt
     3061 cgatttggaa aaattcaaag gcaagccgat gtatcgcacc tcaaccggtt tagcattgaa
     3121 gaaaaccact caagaatttg aaaaagcctt tgctcaagcg aaaatttacg aaggtggtgt
     3181 ggcaaaagcg gataatgctg aagctccaac ttctgagaaa aaagggttat ataaacactt
     3241 gatgaccggt gtatcacata tgttaccgct ggtggtagca ggtggcttgc tcatcgctat
     3301 ttcctttatg ttcggaattg aagcctttaa agatgaaacc atcgcaggcg gcttgccgaa
     3361 agccttaatg gatattggtg gcggtgcggc attccactta atgattgcgg tattcgcagg
     3421 ctatgtagcg ttctcaattg cagaccgtcc ggggttagct gtcggtctta tcggcggtat
     3481 gcttgctacc accgcaggag cagggatttt aggtggtatc gtagccggtt tcttagccgg
     3541 ttataccgta aaattcttaa atggtgcgat tcagctaccg gcaagtttaa cctcacttaa
     3601 acctattttg attttaccac tcttaggctc agcgattgtc ggcttactga tgatttatgt
     3661 catcaaccca ccggtgaaag cattaatgga tgccttagtg gaatggttaa acacaatggg
     3721 gcaaaccaat gcaattattt taggtattat tctcggtgcg atgatgtgta ccgatatggg
     3781 tggtccggtg aataaagcgg cttatacctt tggtgtgggt ttaattgctt cacaacaata
     3841 tatgccaatg gcagcggtga tggcggcagg tatggttcca ccaattggta tggcgattgc
     3901 gaccctgatt gctcgtagca aattcaacac caaccaacgt gatgcaggta aagcttcatt
     3961 cgtgttaggt ttatgcttta tttcagaagg ggcattaccg ttcgtggcgg cagaccctgt
     4021 gcgtgtaatt gccagctcaa tcttaggcgg tgcaaccgcc ggtgcaattt caatggcact
     4081 aggcattacc ctacaagccc cacacggcgg tttattcgtg attccattcg tttcacaacc
     4141 gttaatgtac ttagctgcta ttgccatcgg ctcattagtc accggcgtag tctatgccgc
     4201 tatcaaacaa aaagcagaat aaagcacaaa cacaaataca aacaaaaacg gagcgaaacg
     4261 ctccgttttt atatcatatt ggtacttact gaattctatt tcatcgaaat atcaagtcta
     4321 aaatattatt tttgcgatcg agatcgaaaa aatcattttc atcactttac gaataatatc
     4381 aactcgttat gattttgcta cgaggagata ctatgcagtt tattgaattt accgatcctg
     4441 atagtggaat ttcttatcaa tacagtgaat ttactattgc taatgtcgca tttatcatta
     4501 atttctgctc agatgccgat gttatatcga ctttgtccgc attaggcaaa gatatcacaa
     4561 actatataaa cacctattcc tgttgcacaa tcaaatttat ggcgaaagag catctagaaa
     4621 atagcggttc taatattgac atttatgccc ccgcagcgaa tcatcagttc aaacgtaaag
     4681 aaataattgc tttacaagaa acccttgagc gtttattatt tgagcattat gtacgtttta
     4741 caccagaaag ctatctcttc attgccgaga gagattcact taaccgaatg tatcagcgta
     4801 tgtgtgtgcc acgatgtgat tttatgcaat ctttccaagt ggtttatccc ttgggcgtta
     4861 atcaagattg tttcatttta attacgccaa aaggaaatct aaaatgaatc aacaacgtcc
     4921 agtttccgtt cgtttaaagc aagaaggctt aatcgctttt aagcaagcct atcagcgagc
     4981 aaaaaaagca ggtctattga aaccggtcaa ataatcttta aaccgcttgc tctacaagcg
     5041 atttattttt ccttaattat cacaccttgc tacgaaaact atcccaactc aataatccaa
     5101 tcgaaaccag caaacagacc atcaaaatat aggaattggc atcgagtttt tcgccgatgg
     5161 caaaagaaat cagcaacatc accaacggtt caacatagcc cagtaaacct aatacattaa
     5221 tcggtaataa attgctcgag aggatataaa gaataaaagc actgccactt accagcccca
     5281 gcaatccgag gtagaaataa atttgcggat tttctgccac tattggcgtc atttccactt
     5341 ggctgagata ataaagtgca acgggtaata ccagtaacaa ctccacaaaa aaagtagcta
     5401 acgtgttgat ttgaaaataa cggcgaaggg taatataaag cggataaccc aacccagcta
     5461 cccaagtcgc ccacgaaatc gtgctgttaa aaaacaaact actgccaaca ccgatgactg
     5521 cgaaaagtag agaaagccat ttcaggcggg taaaatgttc tttaaacacc atttttccta
     5581 gagccaccgc cacaatcggt aaaagcaagt aaccaaacga cacctgcaac gcctgcccgt
     5641 gattaggagc ccataaaaac agccaaagct gcacgccggt gttgagagca aggagcaaaa
     5701 tgaccaatac aagcggtgga ttttgtcgaa ttttttgcaa aagatccgca aaagccgatt
     5761 gctgtttaaa caatataatc gccagcaaaa taaacggaat gactaccact atccgaaagc
     5821 cgaacatcgc ctctccctct aacgggcgaa gcaatatcgc aaaatagtaa actgctccaa
     5881 acagcacatt ggctgcaagc gaagctaaaa ttcctttgag catttggctt tcctcttatc
     5941 aacaatcaaa caacaagcgg ttgactttga acaaaaattt acaaatctta tctacgcccc
     6001 atagtatgaa aaaatttgta agtaagctag ctatattcga tttttcccga tacaatgctc
     6061 ccaatttttc actcttttat ttatattata ggacttcata atgaaaaaga ttttttggat
     6121 tttactgatc gccatgcttg ctgttggcgg ttattcttta acaaaataca acgatttaat
     6181 gcgtgcagaa gaagacatca actccgtatg gggaaatgtt gaatcggctt accaacgccg
     6241 tgcggattta attccaaact tagtgaatac cgtaaaaggt caggctaact ttgagaaaga
     6301 aactttaacc tctgtgattg aagctcgtgc aaaagcaact gcggtaacca ttgacccaag
     6361 caatgcaact gaagagcaaa tggctaaatt ccaagaagcc caacaaggtg taaactctgc
     6421 tctttcacgc ttattggttt cagttgagaa ataccctgaa ttaaaagccc acgaagcgtt
     6481 tttaaatcta caagctcaat tagaaggtac ggaaaaccgc attaacgttg aacgcaataa
     6541 ctttaacgaa aaagtgaaag agtacaacaa gcaagtgcgt gaattcccga ctaaattagc
     6601 ggcaatgatt atgggcttta aagcaaaacc gcaatttaaa tctgaagcag gttctgataa
     6661 agcaccaacc gtaaacttca actaatttta gtttcaattt attcatatta aaagcaataa
     6721 gctctttcaa atccggtgct tattgcttta tttttaaggg gaacaaatgg gattattttc
     6781 ttttctctcc aacaaattac cgatagatac gcaacgcatt gaacaagcaa ttgccgattt
     6841 agagcaaaaa acctctgccg aattgcgtgt ggtggtggaa cgaaaagcca aaatcggcaa
     6901 aaccgacaac gccgctatgt tgcgagcaag tgagcttttc gatgaattaa aaatgcgtga
     6961 aacggctgaa cataacggtg tgttgatcta cctttcattc aagcctcact acgctgcgat
     7021 tattggcgat gaaggcattc atcaaaaagt cgataacgat ttttggcaaa aaatctatgc
     7081 cacaatgtgt ttggactgcc aacaaggcga ttacacccaa gccatttgtg atgcaatcaa
     7141 aatggtggaa gctccgctcg ctcaccattt cccttatcag gctgatgata aaaacgagct
     7201 ttcaaacgag gtggtagtca aatgatgaaa tccctttgca aatttctatc tattttcaac
     7261 cgcttgttat tggtgtgctt ggctctgttt agcctaaatg ccacagcggt gacctaccca
     7321 gagccgccta atccgtttta ttatattacg gactacacca aaaacacctt gagccaacaa
     7381 gaatggcgga cattagaaga tgccttaatt gctaactgtg ccaagacaag ttcgcaaatt
     7441 gccgtggtga ttattccaag cacggaaggc gaggcagttt caacctatgc tcataccctg
     7501 tttaacaaat ggggaatcgg acggagcaaa aataacgaga acaatggtat attgttatta
     7561 attgccaaaa atgatcgcaa actctttatt gccaccggac gtgggcttga aggagcgtta
     7621 cctgatgcga ttgcatcgag cattatccgc aatgacatca cgccattctt caaacaagag
     7681 caatatgcag ccggtatcgc ccatggctta tccgccatta tggcagccat taacggggaa
     7741 tatgcccctt atgcaagtta tggcgaagaa atgcaagaat ttgatgacat agacggctta
     7801 ctctttttct tgtttgccgg cattgtgatt ttcctaattt tccgcccacg aggaaacagt
     7861 acctatatta gtcccagctc aatggatcaa ctaggacaaa tactaagaga aagccaacgc
     7921 agaggtgggg gctttggcgg tggtctcgga ggtggctttg atcgaggctc aggtggattt
     7981 ggcggaggct tcggtggtgg ttttggcgga agcagaggca gtggcgacag cttcggtggt
     8041 ggttcatcag gcggtggagg cgctggagga agctggtagt ttccgcccaa tttaaaacaa
     8101 tacaagcggt catatttctc aaaaaaattg cgtatttttc gctaaacgca caaaacgcta
     8161 atgaaaataa gaccgcttcc tcacttctct aagctatgcc ctttttagta acaatgctac
     8221 ggcttcacaa gctatgcctt cacctcgccc ggtaaaccct aatttttctg ttgtagtggc
     8281 ttttacattc acttgtgata tatcgcattg tagatcgtct gcgatcacct gtctcatttt
     8341 atcaatatgc ggtcgcatct tcggagcttg agcaataatg gttacatcga cgttaccgac
     8401 ttgatagccc tgttcttgca cttgtcggta agcttcaatc aacaaaccac gactatcggc
     8461 atttttgtat tgcatatcag tatcagggaa taatttgcca atatcaccta aagctgctgc
     8521 gccaagcaac gcatctgtta aagcgtgcag cgctacatct ccgtcactat gcgcaatgaa
     8581 gcctgtatga taaggcactt caaccccagc aatcatcagt ggtctatctt cgccaaaagc
     8641 gtgaacatca aaaccgtgtc caatacgtat cattttagtt ctccaaatta tgtgtaaggt
     8701 aaaattccgc taaggctaaa tcttcagggc gagtgatttt gatattatca cttctacctg
     8761 aaaccaattg tggctggtag cctgcaagct ccattgcaga tgcttcgtct gttacctgaa
     8821 gcttattggc aaaagcagag gataatgctt gttttaatgc ttgagcagga aaaaattgtg
     8881 gggttaaagc gtgccataag gttgagcgat cttctgtgtg tgcgattttc gtgccgtttg
     8941 ctcttttcat cgtatctacc gctggaatgg cgagaatgcc accttgcgga tcgttaattt
     9001 gcaaaagttt atctaaatct gaccgcttga ggcaagggcg agccgcatcg tgaactaatg
     9061 cccaagcatt ttcagtgttg atttcctgta aggcatttag cactgaatct gctctcgttt
     9121 ctcctccaaa aacaagttgg atcttagggg attttaggag ttccaatgtg gaataaaaag
     9181 ggtcttttct tgccaccgct acaatcactt tttcaacatg agggtgttca agaaaaatag
     9241 acactgtatg ctctaagata gtcttaccct ttaattgtaa atattgtttt ggtttttctg
     9301 cttgcatccg gctaccaact cctgacgccg gaattactgc aataattttt cgcttcataa
     9361 tatatcaatt atgtattatt tgttttttgg tacaattcgg tagaacatct cgttctcttt
     9421 taccatttct cgttcaagtc ttgctctctc ttcaagtgca tctacgccgt tctttaaatc
     9481 gtaaatttcg gcttcaatta gtttattgcg tgaagtaagc tttgtgtttt ctacttttaa
     9541 taaagcaatt tcttcttgca cttcttgata atcactccaa ccattttttc caaaccaaaa
     9601 gctatattgg aaaaagccga gtaatagggc aaaaaaagta attaataaac gcatttattt
     9661 tctcttatat gaaatagtaa tgaactaagc gggttgattt taccttgaat ttgcaaaaaa
//
LOCUS       DANLXK010000094         9542 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.095, whole genome shotgun sequence.
ACCESSION   DANLXK010000094 DANLXK010000000
VERSION     DANLXK010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9542
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..373
                     /locus_tag="PXD88_001919"
     CDS             <1..373
                     /locus_tag="PXD88_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281465.1"
                     /translation="FALVQAELKYSGSNIPSEYSKFNLENVLIDFPNKTNSVAYQNLV
                     IHNAKTRAGKLKTQYANAHDLGNLVLVEDIQKIFSGLLEIIYQVRCHLVHGSLSPTPE
                     NHEVVKYCYLILWDCLKGFCD"
     gene            complement(641..1378)
                     /locus_tag="PXD88_001920"
     CDS             complement(641..1378)
                     /locus_tag="PXD88_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6281466.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(1375..2343)
                     /locus_tag="PXD88_001921"
     CDS             complement(1375..2343)
                     /locus_tag="PXD88_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6281467.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            2524..2859
                     /locus_tag="PXD88_001922"
     CDS             2524..2859
                     /locus_tag="PXD88_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6281468.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            2843..3166
                     /locus_tag="PXD88_001923"
     CDS             2843..3166
                     /locus_tag="PXD88_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6281469.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(3156..5042)
                     /locus_tag="PXD88_001924"
     CDS             complement(3156..5042)
                     /locus_tag="PXD88_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6281470.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            5072..5872
                     /gene="metF"
                     /locus_tag="PXD88_001925"
     CDS             5072..5872
                     /gene="metF"
                     /locus_tag="PXD88_001925"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL6281471.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(5921..7081)
                     /locus_tag="PXD88_001926"
     CDS             complement(5921..7081)
                     /locus_tag="PXD88_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281472.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(7141..8157)
                     /gene="galE"
                     /locus_tag="PXD88_001927"
     CDS             complement(7141..8157)
                     /gene="galE"
                     /locus_tag="PXD88_001927"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL6281473.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(8245..8406)
                     /locus_tag="PXD88_001928"
     CDS             complement(8245..8406)
                     /locus_tag="PXD88_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL6281474.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(8384..9385)
                     /gene="lpxK"
                     /locus_tag="PXD88_001929"
     CDS             complement(8384..9385)
                     /gene="lpxK"
                     /locus_tag="PXD88_001929"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL6281475.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(9387..9542)
                     /locus_tag="PXD88_001930"
     CDS             complement(9387..9542)
                     /locus_tag="PXD88_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281476.1"
                     /translation="MSLGNGVEEIQRLQLIISHKDELLAHKEEIIENQKRELALLRDL
                     VETLKNK"
BASE COUNT         2616 a         2073 c         2117 g         2736 t
ORIGIN      
        1 ttttgcatta gttcaggcag agttaaaata ttcaggtagc aatattccaa gtgaatattc
       61 taaatttaac ttggaaaatg tgcttattga ttttcctaac aagacaaatt ctgtagcata
      121 tcagaatcta gttattcaca acgcaaaaac gcgtgcagga aaattaaaaa cacaatatgc
      181 aaatgctcac gatttaggca atttggtttt agtagaggat atccaaaaaa tattttccgg
      241 gttattagaa ataatttatc aagttcgttg ccatttggta catggtagct taagtccaac
      301 acctgaaaac cacgaagttg ttaaatattg ctatttgatt ttgtgggatt gtttaaaagg
      361 attttgtgat tagttattgt caataaagct acaagcggtc aattctccca aaactttgca
      421 aatttccccg caaaactgac cgcttgttct cctctatcca ttcacctcaa ccaacttttc
      481 tctctacccc tactcaaaat cggttaaaca atctgttgag gtaaatgttg tgtcggaatg
      541 ggatttaatc ttaatgaaac tgaaaaaatc ttctgccaag caaatttccc taaaattgga
      601 agttcatttc caatttctca aaaaatcacc caaaccggaa ctacacttcc aatttttcaa
      661 tcccccacat ttcccttttc tcccaatcca tttcagcttt caccccaaaa gccgttgcaa
      721 tattttcggc atttaagacc gcttgtgtgt tgccgctgac gagtaaattg ccgtttttaa
      781 gcagaatgat ttcatcacaa aaacggtagg caaggggcaa atgatgaatc accaccacgc
      841 aggtttgtgt tggagttagg gctttgagct gctgcataat atcgatttgg tagtaggggt
      901 cgagggcggc aatcggttca tcggcaagca agatcggggc ttgtttcatc aaacaacggg
      961 cgagttgcac tcgggtctgt tcaccgccgg agagctgttg gtaagtgttg tccagcaggt
     1021 gagaaatcgc caattgttcg gcaaccgaac gcaccttttg acgctcttgt tcaggcggaa
     1081 gcggtgcggg caagccgagt gcaatcacat catacaccga aagttgccac gccacgttga
     1141 gctgttgggc gaggtaggca aattgtcggc tcctctcaac ggcggaaagg gcgtgcagtt
     1201 tgcaattttc cagccaaatt tcaccgcttg tcgggcgtag aatgccggca atcgctttga
     1261 gcaacgagga tttccctgcc ccgtttgcgc ccataatgcc gatcaatttg ccttttggca
     1321 gatagcaaga gaggtgttga ataccgtggg caagggtgag attttcaatc ttgatcattg
     1381 tgccaatctc cattgctggg tgaataaaat ccaaatcaaa aacggtacgc ccaaaattgc
     1441 cgtgagcgtg ccgatgtaaa ttcgggcaaa aaacggcaca tattgcaccg ccagatctgc
     1501 aatcagcagt aacaacgccc cgattaaagc ggaggtaaga taaagctggg acggcggttt
     1561 tttcagccaa atacgggcaa gatgaggggc tatcaagccg ataaaaccga tggtgccggt
     1621 ctgtggaatc gttgctccga ccaacagcgc cacgccaatg ctaacggtaa aaaaactgcg
     1681 ttgcaggttg atgcccattg ttgctgccgt ctcttcgcca aaggtgagca ggtcgagata
     1741 acgccgttcc cgatagaggc agacaatgcc gagcaagatc aacggtaacg cccaacatac
     1801 tgcctctgcg gttgcccaga ctaatgagcc ttgcaaccag cggtagagtt ccgccaacgc
     1861 ccacgggctt tcggcattgg aaagcagtaa agtcaccgct gccccgagca acacgtttac
     1921 cgccacgcca cttaaaatca tcattgttgt gccgtggcga aagctaatca gccacaccag
     1981 caaaaatgcc cccagcgccc ctgccacacc gccaaacagt agccagccca tcggggctga
     2041 aaaatagtag agcagaaata cgctcaccgc cgttgccccc gaactgctcc caagcaaacc
     2101 ggggctggca agcggatttt taaacacgcc ctgcatcgca ttgccggcaa gcgcaaggct
     2161 ggcgcccgtc agcaccgcca agccaatacg gggcagtcga atttcaccca gcaccagcca
     2221 gcgcagatcg cttagcacgc cttccgcatt tttaagcaag gcaaaatcgc tcagttggta
     2281 aaaggctgcg ttgctaacaa tcagcaacaa caagcttcca agcacaatgt ttaatttctt
     2341 cattcttctt tctctcatca aacgtgcaaa ttataccata gcgccaaagt caagctgaaa
     2401 acgctatttt tgcgatcatc atcgaaaaac tagcgtttgc cgaatgtaac ccacgacagg
     2461 ctttgctata ttccttcaat cagcctaagt tttgtattta aaacattaca gattgggggt
     2521 agaatgtacc atattgaacg cactgaaatt ttcgaccaat ggcttgaaaa tttaaaagat
     2581 ccacttgctg tggtgaccat tgcaagacgt attgaacgtg ccgaaagcgg aaattttggc
     2641 gataccaaat atatcgcaga aggaatttcc gaaatgaggc taaacgtcag caaaggttat
     2701 cgcctttact atgcgcaaaa aggtagcatt atttatatac tactaaatgg cggacataaa
     2761 ggcacgcaac aagctgatat tgataaagct aaaatgctat gggcagaaat taaacaacat
     2821 atggcagaac aggagaaaaa gaatgaacga attatatgac gccccaattc cacaagctac
     2881 tcgtgaaaaa tttggcattc aacctttcga tgccgctgaa tacctcgcca atgacgagct
     2941 aatcgccctt tatttggcgg aaacattgaa agacggcacg gacgaggagt ttattcaagc
     3001 attgaatacc gtggcacgag cgaaaggaat gaatgagtta gcgaaaaaag cagggatcgg
     3061 gcgtgaaagt ttgtatcaaa gcctttccag cagtaagccc cgttttgaga ctatccgcaa
     3121 aattattagc gcattaaatt tggagttgtc ggtcgttaag gcgtaagttt gtgcattaat
     3181 tgtatcccct gccaaacccc gtggtcgaaa cagtaggtgt atttcatcgg taggacaagc
     3241 ggtggatttt ggctcatttt ttgccatatt ttttgtaatg ctgggtgttt gagcagttcg
     3301 gcttggttgt tatagctttg gttatcggtg aggaacaata actgtttggg ttgcgctaac
     3361 agcagttttt ctagcgagaa attctgtggc gtgaggtcgc tttttaatgg tgacagaccg
     3421 agaagatcca acaacgtttg atattgcgga aaatgcggtt cgatcatacc cgtttcgctt
     3481 agaattaaag tttcagcaag cggttgtttt agcggaattt tttgcaaacg tagccgttcc
     3541 accagctttt ccgctttggc ttgattttgg gttagctcgc ccagttgtaa aatcagtgtg
     3601 aaaagctgtt cgggtgtttg cggactgtcg tttaatgcga ctaacttaaa gccaagctgt
     3661 ttcagccgtg cggtgagttg cggatagaag gtttcattca gcaaaatggt gctgtcggca
     3721 tagggcaaca gggcggtgag ttcaggctca acggtgggct tgtccgtgtt cagtttatcc
     3781 aacatcatca acggcttttg ggaatagggc gacatcgccc gaatttgctg tggttcggca
     3841 agttccagca acagacggtc gctacacaaa tttggcgata aacggtaagc tcctgaaata
     3901 cgcccagtga tagaattttt aaactgtgaa ttatcggtgt aacggccact aatagaaaaa
     3961 ctgtgatctt gttcggtaaa taagcgatat tctagtgccg cacttttttc ggataaggtt
     4021 ttttcacgca aatatttatc agaggtatag cgtgtttttg cataatctgt cagtaaactg
     4081 accgcttgtg tcacttctcc ttcacggtca aagtttacat ctaattgata attcgcatta
     4141 agttgttttt cgttgctgta gcgagcattt gaaccgaaat gtgttgcttt actattgaat
     4201 tggctgatat ttgcttggtg tttcagcagc tcttgttcat ttccccaata accgcctaat
     4261 ttaaaagttt gattgcgagt acgggaatat tcaccgctaa cgtctgaatt atagccatca
     4321 atatgaacgg tttgggaaga ttgagcggca agaacttcta cccctttgtt accgaggtca
     4381 taacctaaac gtaaagagcc gttatcacga tgaaagccat ctcgttcgct tgcaccaccg
     4441 gttttcactt ctgagcctgt ttctgtggta tagctgaaat ggtttttact cagtgcggaa
     4501 atgcctttgg tacgatggct atcaccgtgt aaggcatagt agaaaccgtt gtgaaatccg
     4561 gaaagtgttg cgctggcatc acgggtatta tttgagccta aaccaagatc gacctccgca
     4621 ttgaatggtt tctctttgta taaaccgctt ttagtggtga tataaactac accacccata
     4681 gcactgcttc cccaaagggc ggattgctcg ccacgcaaca cttcgatacg ttcgatattg
     4741 ctaatcggta agccaccaaa atcgaaattt ccaatattaa tcggattgac ttttacaccg
     4801 tcaatcacaa ccgcagtatg gcgagattct gcccctcgta aaaataagct agtaagagta
     4861 ccacgcccac cttgttgccc aatcgccacg cccggcacag tctttaacac atcactcaca
     4921 taagtcgcat tgcgtgcggc aaaatctttt tcggtaagaa ccgtcacgct ggaagcggtt
     4981 ttgtcttggt tgattggggt tgcataggcg gaatagactg ttacggaatc aagctgagtc
     5041 atctcatttt gtgcaaaagc tgtacttgct agtgcaacag aaatggcgaa tgctgtggga
     5101 ttctattgat cgcctaagtc ctttaaaacc gaaatttgtt tcggtaactt atggagcaaa
     5161 ttctggtgag cgagatcgta cacacagtat tgtgaaatca atccaagaaa aaacagggat
     5221 catttcagct ccgcacttaa caggcattga tgcaacaccg gaagaattaa aggtaattgc
     5281 caaagattat tgggatagtg gtattcgccg aattgttgct ttgcgtggcg atataccgaa
     5341 aggttatgat aaagcactat tttacgcctc agatttagtc gctttattaa aatcagtagc
     5401 agatttcgat atttccgtgg ctgcctaccc tgaagttcac cctgaagcaa aatcagcaca
     5461 ggcagattta cttaacttga aacgtaaaat cgatgcgggt gcaaaccacg ttattacgca
     5521 attctttttt gatgtagaga gttatttacg ttttcgtgat cgctgtgttt ctattgggat
     5581 tgattgtgaa attgtgccgg gtattctgcc ggtgacaaat ttcaagcagt tgcaaaaaat
     5641 ggcagcagtg actaatgtta agatcccgac ttggatgggt aaaatgtacg aagggttaga
     5701 tgatgatcaa accaccagaa acttagttgc agcaagtatt gcaatggata tggtgaaagt
     5761 gctttctcgt gaaggggtga atgatttcca cttctatacc ttaaatcgta gtgaactcac
     5821 ttatgcaatg tgccatactt taggcgtaag acctgattta acaactgcat aatcgaacat
     5881 taaggctgta tagctaaatg agctatacct ccttatagtt ttacttctct tcagccaccc
     5941 aaatctcgcc attttttaat aataaatagg ctttgttgga atcggctttg gtttgtttaa
     6001 ttccagccgg cagggcggtt ggcaattcag tgatcttgcc tgttttatcc aacacaacaa
     6061 cttgttgata gcccatttgg ggtatcagtg cgaaagtctc tgttgtcgcc actaaattgg
     6121 tttcgtgatc accatagcgg tgattgctta agccggaggt aataaaacgt tcagctaatt
     6181 ggtttccttt caggctgtat tcaaccaaat tgccttttag atgtggcatt tggattgcat
     6241 agagcttgcg gttaaagata aacggcgatt gccaacggtt agtcgacagc ggctcacttt
     6301 cggcttctat tgataatttt ccgtctttaa cgccaatcac aacagtgctg gccccattgc
     6361 catcgccaga gataacagaa acgatcttgg tttttccatt ttctgtgaaa gtcgcccagc
     6421 ggttggcttc aaatactcgc ccttgttggg tgagtttttc tgctaagggg tttagggtat
     6481 ggcgttctag aaattgaatt tcgcctgcct ctacatcatc gcctaataca ccgtgttgat
     6541 atgtaaaatc atcaggcttt gcaagtacag caatatgccc ttggttaggt gtttcggcat
     6601 caaaatcaat ttgcagaggg tgagcatcag gcaacacctc ggtttctgcg gtggcagtaa
     6661 tagtggcttg gtttccttgc gtttcaattc tggctaactt aaattgtccg ttttgtttgg
     6721 tcacggcaat ggtggcaaaa ttaagggcgg tcattgtagc tttcggggca aggggaatgt
     6781 tggaggtata gattttatca gccgtccaca gcataaaatg cccgttttga tccgctaacg
     6841 caattcgttg gtattgagct ttaggttcaa tctcggtgga aactccatct gccagttttt
     6901 gagcttgttg tgtgactctc cataattgtt tttgttggtt aattaccact aattcgcctt
     6961 gttctgaaag gtcaaattgg cttactttgc caatttgggg aagtgggagt ggagaaagct
     7021 gaacatcagc aaacaaagaa gcggagaaca agcttaagat taacagaata gattttttca
     7081 ttagcgttac ctaaaaagaa gatttaaatg ataaagggag atgttatctc cctttacgct
     7141 ttagccttta taaccattcg ggttattttt ttgccaattc caagtgtctt tcatcatttg
     7201 ttctagccca cgctcggttt cccaacccag ttgctctaac gctttttgtg gagcggagta
     7261 gcaaacggca atatcgcccg ggcggcgatc taccactttg tatggaatag taatgccatt
     7321 tgcggcttca aaggctttta ccatatctag caccgaataa cctgttcctg tgcctaaatt
     7381 gtaaacgtgg aaaccggcat cattttggtg cttgtctaag gcttttaagt gaccaagtgc
     7441 taaatctacc acgtggatat aatcacgcac acctgtgcca tcgtgagtat tataatcgcc
     7501 accaaacacc gataattgag gtaatttgcc cacagccact tggctgataa acggcattaa
     7561 gttatttggg ataccgtttg gatcttcacc gattaaaccg ctttcgtgag cccctaccgg
     7621 gttgaagtaa cgcaatacta ccgcacttaa ttgtgggaag gctttaacgg tatcttcaag
     7681 aatgcgttca accatatatt tggacgtacc gtaagggttg gttgtgccac cgacagggca
     7741 agattccaca atcgggataa tctgcggatc accataaacg gtcgccgatg aactaaacac
     7801 aatggtattc acattggctt ttagcatctc ttctaccaat acaatcgagc cggttacatt
     7861 gttttgatag taacgtagcg gttctctgac gctttcgcct acagctttta aaccggcaaa
     7921 gtgaattacc gattcaatct gattttccgc aaaaattttg cgtaaaatat cacgatctaa
     7981 aatatcgcct tgatagaatt ttacgctctt gccggtgatc tgcttcacac gctcaagtga
     8041 tacttcagag gaattagaaa gattatctaa caccacgatt tcacgatttt cgtttaataa
     8101 ttcaactaat gtatgtgaac cgatgtagcc tgcaccacct gtaactaaaa ttgccatttt
     8161 atgttcctct ataaaattaa tacgaaccaa ggttattgtt gctattttac ccgatttaat
     8221 caggcttgct aatatttatt cagtttataa tgccactccg gcttccggca gtaattccgg
     8281 aatgccgttt ttaatcgggt aagcaatatt gagcttaggg ttaattaatc ggttgttctc
     8341 tttgtcccat tctaattttt cattagagac agggcagacg aggttattga gtagtgtttc
     8401 gttcatcttc ttttcctagt ttttgtagaa tcggggctaa caaacaagcg gtcgattttt
     8461 ctgaaaatgt tgcagaaacc ggtacatacc accaatttgg ctgtgcaaaa tcgtggcatt
     8521 ttaccgcatc tttctcggtc attaataacg gcgtttggct atcagcaaat tgagccagct
     8581 gagccttatc aaaggcttga tgatcggcaa agccttgagt tttggcaagc ggaatgccta
     8641 atttttctaa catcgtaaaa aagcgtggtg ggtgaccgat accggcaatc gccacacagg
     8701 gttgggtaaa ttcgcttaat ggcttgcgtt gattggtgac taaattaatt gcatcagacg
     8761 gttcaagcgt cattaaatgc tcgttagctt gcggtgtgcc gccgttgcaa ataaccgctt
     8821 gcacggagtt taaacggctc ggtaattcac gcaatccgcc cgccggcagc acaaaaccgt
     8881 taccgaaacg ccttacgcca tcaaccacca cccattccat atctcgctgt agggcatagt
     8941 gttgcaagcc atcatcggtg atgatgatgt ccggctcaaa ctgatttaat agtaattcaa
     9001 tgctttgttg gcggtttgga gaaatagcca aaggcacatt ggttcgctga acaatcagaa
     9061 ccggttcatc acccaccatt tcagcagaac tttctcgggt aactaattgc ggaaacgttt
     9121 tcgctttacc gccatagcct cgagaaatca cgcctacttt tacgccacgc tgttgcagtt
     9181 gttccaccag ccaaacgacc actggcgttt tgccgttgcc tccaaccgag atattaccga
     9241 ctaccagcat aggcaaaggc gaacggtacg attgcaaaat attcagagaa tataaccgct
     9301 tgcgagcttg actaatcagc caaaacagca acgaaagcgg cgaaagcagc caagtgataa
     9361 gggattttgt ttgccagatt ttcatattat ttatttttaa gtgtttcaac taaatctcgt
     9421 aataaggcta attcacgttt ttggttttcg ataatttctt ctttatgggc taataattca
     9481 tctttgtggg agataataag ttgtaaacgt tgaatttctt ctactccatt tcctaatgag
     9541 at
//
LOCUS       DANLXK010000095         9511 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.096, whole genome shotgun sequence.
ACCESSION   DANLXK010000095 DANLXK010000000
VERSION     DANLXK010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9511
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..462
                     /locus_tag="PXD88_001931"
     CDS             <1..462
                     /locus_tag="PXD88_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDL6281477.1"
                     /translation="AQDPTAAVKCWVFNGDLYIEFEAGKVGLELDDTADFIAKGVPQI
                     ADHVVRADSARPESISYLKRHGLPRIIGVEKWKGSVEDGIEHIKSYGKVFIHPRCQQT
                     LNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYALTPLMQVKSAKGVLL"
     gene            459..1835
                     /locus_tag="PXD88_001932"
     CDS             459..1835
                     /locus_tag="PXD88_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL6281478.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            1789..2727
                     /locus_tag="PXD88_001933"
     CDS             1789..2727
                     /locus_tag="PXD88_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL6281479.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            2714..4084
                     /locus_tag="PXD88_001934"
     CDS             2714..4084
                     /locus_tag="PXD88_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL6281480.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            4077..4511
                     /locus_tag="PXD88_001935"
     CDS             4077..4511
                     /locus_tag="PXD88_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281481.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            4526..5515
                     /locus_tag="PXD88_001936"
     CDS             4526..5515
                     /locus_tag="PXD88_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL6281482.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRS
                     DVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            5527..5778
                     /locus_tag="PXD88_001937"
     CDS             5527..5778
                     /locus_tag="PXD88_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281483.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHADGETGETGETGETGETGETGETGETGQKGKKDKGK"
     gene            5781..6158
                     /locus_tag="PXD88_001938"
     CDS             5781..6158
                     /locus_tag="PXD88_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281484.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            6158..6502
                     /locus_tag="PXD88_001939"
     CDS             6158..6502
                     /locus_tag="PXD88_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281485.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            6504..6872
                     /locus_tag="PXD88_001940"
     CDS             6504..6872
                     /locus_tag="PXD88_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL6281486.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            6869..7249
                     /locus_tag="PXD88_001941"
     CDS             6869..7249
                     /locus_tag="PXD88_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281487.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            7253..7735
                     /locus_tag="PXD88_001942"
     CDS             7253..7735
                     /locus_tag="PXD88_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281488.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(7775..8191)
                     /locus_tag="PXD88_001943"
     CDS             complement(7775..8191)
                     /locus_tag="PXD88_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL6281489.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(8247..8423)
                     /locus_tag="PXD88_001944"
     CDS             complement(8247..8423)
                     /locus_tag="PXD88_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL6281490.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            8519..9190
                     /locus_tag="PXD88_001945"
     CDS             8519..9190
                     /locus_tag="PXD88_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281491.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(9205..9438)
                     /locus_tag="PXD88_001946"
     CDS             complement(9205..9438)
                     /locus_tag="PXD88_001946"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281492.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
BASE COUNT         2824 a         2007 c         2277 g         2403 t
ORIGIN      
        1 gcgcaagatc cgacggcggc ggtcaaatgc tgggtattta atggcgatct gtacatcgag
       61 tttgaagcag gcaaagtggg cttagaactt gacgacaccg cagactttat tgccaaaggc
      121 gtgccacaaa ttgccgatca cgttgtgcgt gcagattcgg cgcgtcctga gtcaattagt
      181 tacctcaaac gtcacggctt accgcgcatt atcggtgtgg agaagtggaa aggctcggtg
      241 gaagacggca ttgagcatat taagtcctac ggcaaagtct ttattcaccc acgctgtcag
      301 caaacgctca acgaatttcg cctttattcg tacaaaaccg accgcttatc gggcgatgta
      361 ttgcctgtcg tgattgatgc ccataaccac tttattgatg cgctacgcta cgcattaacg
      421 ccgttgatgc aagttaaaag tgccaaagga gttttactat gagcctagag caagacagac
      481 tggctttttt agccgaagcc ctagggcttg gcaatatcaa acgaagaacg ttatggaagg
      541 agtttggcta ccctaatacc ttaacattca accatttctt aaaagcctat aagcgcaata
      601 gtatcgcttt tgcagcgatt aaccgcttac ttgacggttg ttgggttgac tgccccgtaa
      661 tcgttgaggg tgagcaaaag aacgaatcaa agcagacaac cgaatgggag tccaaagttg
      721 aacgttttat gaaacgctac tggtcggcaa tcaaagaggc agatagacga aaccttgtcg
      781 gtaactattc ggcgttatta cttcaagtaa gagatggtca acaatgggat cagcctattt
      841 tgcaaggcgc gctatctagc attggagagt tcggactggt taaactgatc cccgtgtggc
      901 agtcacagct ttcagtgaca gagtttcaag aggatgtgac cgccgataat tacggcgaac
      961 cgctgatgta tcaattcagc gaatctgcct ttggcaaaaa aagcgtgtca cgaaatatca
     1021 aggttcacgc aagtcgtgta attttgctca atgagggtgg cgactttaat tcccctcatt
     1081 ctggagttcc tctgcttgag gcgggttaca acaagctagt tgatctcgaa aaaacatcgg
     1141 gcggcagcgc cgaaggtttt ctgaaaaacg caagccgaca attagggatc aaattaacaa
     1201 aagatgttga tttgagacag ctcgaagaca gcgcaaaagc ccttgggttt tcttcatttt
     1261 ctgatgcgtt gaacgacaag atcaagaaaa tcaactcagg aacagactca gccttgatta
     1321 ctcacgaagg tgatgcctct gtgttgtcag tcgcaccagc agatccgaag ccaacgtggg
     1381 aaatttctgc aaatgagttt gccgcctcag tacaaatccc tttcacgatt ttgttcggac
     1441 agcaaacagg gcgattggca agtgacgagg acaaaaccga ctgggcaaac cgttgcaacg
     1501 gtcgtcgaaa tggttttctc accgatgtga taacacaact acttaatcgc ttgtggttca
     1561 tcggtgtgct acctatgcca aaaaatagcg atgtcacagt gtcttggtct gacttacttg
     1621 caccaagcga aaaagagaaa atcgcaaacg cacaggcttt ggcttcagtt gcaactacat
     1681 cgcagtctgc ctttggtttt gccgcggtaa cagcgaacga aatccgcgaa tctttagggt
     1741 ttgaacctct gcctgataat ctgattccgc caacaattga cgacgaaaat gaagatcaag
     1801 acgaaaatca agccactgcg gattccgaca aataaagccg atccgctcaa tatgggagtg
     1861 tcggttgcca agctatttcg tcacattgat gtcatttact cacaaattaa gcgctccatt
     1921 aagcaacaaa tcttgcaaaa gatgtcactg cgactgcaag caaataattt tgagtatttt
     1981 ccttcgtatc ttactgcgac tgagttggcg gatttgcttg aaaccttgca aaagattatc
     2041 gacaaagaga ttttgtcgaa tggttctcaa ggcgaaaatc tctggtttga ctcctatatc
     2101 gacgaagcag cactaaaagg cactcagtct gcggtcactg atttaggtct gcaatcagag
     2161 gcttatcgca gtcagcgaaa cttatcatca atcgttttca gtcctgcgta cttcaaccga
     2221 ttggcgattg cacacatggc aagttatagc gagtggcaag gtttaagcga cgagttgcga
     2281 aaatctttgg cgggggtgat cacggaggcg gttttaaacg gcaaaaacgt gaaagaaact
     2341 gcccgtgaga ttcggcaaaa acttgatgtg tcatcaaaac gggcgaagcg aatagcgcaa
     2401 tcaagccagt tggcggcata tcgtcgggca gaatggcaag aggcggaaga ggcaaaagaa
     2461 gaacttgggc taaacaccaa gctcttacat ttttcagcgc tcaaagctac tacgcgatta
     2521 gcacacgccc aacgccacgg caaatacttc gatgttgcag aggtgcgcga atggtatagc
     2581 cgagacggca accaattcaa ctgttactgc aagcagtctg tggttgtggt caacgccgac
     2641 ggtaaaacag atattgagcc tctccttgtt gggttggcta aagaacgtaa acaatgggta
     2701 ggagcattaa aaaatgtcaa aaaataacgt gaacatcgtc accgtcatta acagcaaaaa
     2761 tatcagcaca gaatctattg acggagatca acacctgatt atccgcggcg ttgtgccgat
     2821 tgttgatgat gttgtgatga acgacggact ttatcctgcg gatgaaatca ataaaagcta
     2881 caacagctta gagggcaact ttatgccgct tgggcatcca aaaatcgaag gtaaatacgt
     2941 ttcagcccaa gatgttcgag cggtgaacaa acatcacgtc ggtgcgtggg cgaagaacgt
     3001 acgcaaggaa agtggcaaag tgctggtcga tatgtatatc aaccgccgct ttgcggaagg
     3061 ttcagaacag ggcaaaacct tgcttgaacg acttgacgga atggtgacaa acaccaacgc
     3121 tgaacctatt cacgtttcca cagggctgat tctaaacaaa gtcaagcaat cgggtaaatc
     3181 caaaggcaag aaatatagct ggattgcgac aaatatgtcg ttcgatcata ttgcaatatt
     3241 gcttgatgtg ccgggcgcgg cgacacctga tgatggcgtg gggatttttg taaaccaaga
     3301 cggaagcgaa atgggggtgg aaaatgtaaa cctaacacaa gcggcggatt accgcacaga
     3361 aaagctgttt gacaaagtac gattttacct gatggcgaac tcagatttat cgtttgaaga
     3421 aattcatcgc gcgctgcgtg aagctattcg ccccgaaggc aaagataagt ggtcattttg
     3481 ggtcgaagct gtttacccga aatacttcat ctattcggac gataacagcg gcaagaaata
     3541 caagcggagc tattttattg acgaaaatga caatgtgcag ctcactagcg aacctgtcga
     3601 agttgtcaag aagattggct acgaagaaat tacaaccaat gaggaacata atccaatgaa
     3661 aaccaaaatc ttagccgtgt tgaatgcggc aaacgtgaaa acggaaggct taaatgacga
     3721 tcagctcttg gaagcctaca acaagctgca agcggataag ggtaaagagc ctgaaaagcc
     3781 taaaaatgaa gatgacagcg aaattgatga gaaaatcaag aaagcagtca atgccgcgat
     3841 tgagccactc cagcaagcct tgcaagctaa tactgacaaa gagcaagcag caatgcgtgc
     3901 ggcggtgaaa gccaagttca atatgagcga tgccgcagtc aatgctttgc aaggcgaggt
     3961 attaactgag ttgtatgcgc aaacgcaaca atcggtcgga ttaaacaata attcggcaaa
     4021 cggcaacggc gacaatcaat gggatggtta ctcactcaac caagaggaga aaggcaatga
     4081 gtaatgtaat ttatcgcggt tcggtcaagc gtgaacctca aacggtgaat atcgtgatca
     4141 acgatacttc ggcaccgggt gcagtagtta aactccacaa cggcaaatta gaggcggcgg
     4201 ctgatttaaa aggtcgccgt tttttattgg gcaacaaccg ctttaagggg cagacaatcg
     4261 aacaagcgta tgcgaagggc gatactgcaa cggcgtttcg tttagagcct gaacaggagt
     4321 attacgcgca aattgccgac ggcacttata actttggcga tgaactcacg gtaaaacaag
     4381 cgggcggcaa actgaccaaa gcggagacgg gcgatgtagt gctatttttc ttcgacgaag
     4441 aatcgcagcg tgtaatcagt ggcggcaaag gctatgccga tgtcgtggtg gcaaacgcct
     4501 acactaaata agaggtaaca aagcaatgtt gaaattcaca aaagaacaag aacgcttcgt
     4561 gattaacgag cggatcaatt acgacaaaaa acacgcgcta atggcagcaa attcggcggg
     4621 gttattgggc aacgcgatga ctttgccgaa agatgtctgg gcggaatggg atcgtgatgc
     4681 agtgcaaatt cagcgcgaag aattggtggt gtttaacgat ttagcgggca tttcaaaatc
     4741 aatgccgatt ggcaaactta ttcaccattt ccaaacggta tctgatagcg gttcggttaa
     4801 tatctcatta gacggtcgtt catcagcgaa aaccgataac gtggtgctta actaccacgg
     4861 tacaccgttg ccgattattg attccacttt ctcttttggc tggcgcgata tgtcggcagc
     4921 tcaaagcgaa gggtatcaga tcgacggtgc agcacgcgcg aacagtctcc gcaaggtggc
     4981 tgaaaaaatg gaagatctcg ctttaaatgg tgattcctct attgtggttg gcaatgccaa
     5041 gctttacggc ttgcgtactg cgccaaatcg tatgactaac acacacaatc tggatttagc
     5101 cactgcgaca ccgaaagaaa tttacgatgt gttccgtgac ttgattagca aattccacgc
     5161 gaagaactac tactctcctg taacgcttta tgtgaactat ggcgactatt tcgcaatgag
     5221 tacacgtgat tactccgagc agaaatccga aggatctatc ttgaacaaag tgatgacgat
     5281 tccgcaaatt gcgaaaatcg tgccagcaag ccgtgtaccg caaaatgaaa ttctcggctt
     5341 gtgcaagcgt tcggatgtgt accaagtgct taacggtatg ccgttagtga ctcgtccgat
     5401 tgcgcgccat aatgaaaccg atgattactc gttccaaatt atggcagccg ttgccgtgga
     5461 gttcaaattc gacgataaag gcaatgctgg ctatatccag tacactaaat cctaaggcgg
     5521 tgcaaaatga agtggctatt aacacacgat agccacgagt tgaagaaagg cgatgtttac
     5581 gaaggcgaaa cattaccgct ttggcttgtg ggcaaagcta tcgaaatcga agaaaaatcc
     5641 tttgaagttg caacgccttc tgatcacgct gacggcgaaa ctggcgaaac tggcgaaact
     5701 ggcgaaactg gcgaaactgg cgaaactggc gaaactggcg aaactggtca gaaaggcaaa
     5761 aaagataaag gcaaataact atggcagcag aaatagagct atccgaagcg cgaacaacgc
     5821 ttgacgaact gggtttcact tcgccgaact ctctgcttga gctttacgtt cagcaaacga
     5881 acaccttaga ccaggcgttg aacaaatcgg ggtacagcga agaaacacag aaactgatca
     5941 agctctatct ggttgctatt cttgcaattt catctggggc gcgccgtata aagtcagaag
     6001 gtgcgcctag cggtgcaagc cgaacgtttg agtatgatcc aaacgcgcta gacaacctta
     6061 agtcggcgat tcgctcaatt gatccgaaag gttgcgctga aagtttgcta cccaaagata
     6121 aagttgtcgg ctttttcgat gtggtcggag gctgctaatg tcaaatttat cgaattggtc
     6181 ctacaccgca aaagccacgc tttggcaggc taaaggaaag aacgatgacg gcgttttagt
     6241 tttttctacg ccacaaatca tttcctgtga ctacggtgca gatagaaagc gcgcacgttt
     6301 tgagattggg cgtgaacaag cggtcaaaaa tgtgatctgg acggagttcg cccacgccaa
     6361 attaggcgat tatgttctga ttggcgaaag cgagcaagcc gatccgattt tggctggcgc
     6421 agaggaaatt attcatatac agcgctttgc tgatacgttc gaccgcaatc gtgatgattt
     6481 tgcgctgata acaggcgggt aaaatgggga tcaaagtaaa aggcataaga caggtcaagc
     6541 agcggctgaa tcaggttgtt ggcgaggttc agagccaaaa agcaactcgg gcaatgtttc
     6601 gcattttgaa tgcggttgcc cctcttgcgg cgcactatac gcctgttgat acctcaacgt
     6661 tgatcaacag tcaattcact gaaatggaag tgaacggcac acgcttgatt ggaagagtgg
     6721 gttattctgc taattatgcg gcttacgttc acgatcctaa tatcaagcaa aacttccgca
     6781 agccttcagc gaagaaagag tttttgactt ccgcgctgaa cgaatcaaag gctacgatca
     6841 aatccattgt taaagaggag ttgtcactat gatttcttat gtcaaagcct tcaaacaatg
     6901 gttagaggct cactctcttg cagacggcta tgttgtgcag ctttaccagt gggaggatac
     6961 gcaaaaagcc aagcctgtta ttgttattca gccaaatagt ggttcgccgc aagtttctga
     7021 cctgagcagc gaacactatc tgctaattag ccttgttgca ggtaaaaatt caggttacac
     7081 aatcgaagag cgagcaaggg cgattatgtc aaagatttta gttgagcctt tcgcttcctt
     7141 tggttacatc gaatcaatgg gcggattacc cgccccaatt ttcaccgaag ataatcgaat
     7201 gatttttcgc ttaccacttc ggattatttc aacaaatcaa gaggagtagt ttatgggttc
     7261 tccatctcca caaaataacg cagaaaatct cgtggtgggg cgtgccgtag ttttagagta
     7321 cggtacgact gatgcaaagc cacaagaaag cgaatggaag gttgcgggcg caatgacgac
     7381 aaagagttgg gattttagcc caaattcggt tacatcagag gctgatgatg ctggcggctt
     7441 ccctgaaacc ttaattacaa actcagactt tagtatttct ggtgacggtg agtggcgcaa
     7501 acgaccaaaa tcgaaagaac taggcatcaa agatctagtt gtgttatacg caaatgcggt
     7561 aaaaaatcgc acccaacctt acatttgggt tcgtttgaaa tacgcaggct taacaattct
     7621 cggaaaaatg gttatcactg cattaagtag cgaagcccca accaatgact tagtgaaatt
     7681 ctctatagag ttcaaggttg gcgattcaag cactatcgaa attgctgcag cgtaaaaaat
     7741 cccaccctct ataacaagag cggtgggatt atcattatcc tagggatagt tgtaggggct
     7801 ttcctaagct agccaaaata cgaccaatag tgtcgatttt tgtaatatgg cgaggggcta
     7861 aaattcgctg tacttctggc ggacggatat tagttaatcg ggcaatttct gccttgctta
     7921 ccgcttgttc ttgcattgta ttatgcaaaa gcacttttgc gtagatgctc tctggcataa
     7981 acacaggcac ttcgtcggta tttactgggc gagtgagcgg aaagcgtcta tcttcatcga
     8041 aataaatttc aacacaagat agtagcacgt cttctgccat ttccattgct tcttcaaatg
     8101 tatcgccttg ggtgatagct tctggcaaat caggaaatgt cactacaaag cccccttctt
     8161 cagcgggggt aaataacgct ggataaaaca tattttctcc ttattcaagg gtgtagtgaa
     8221 agccccttaa catcaggggc tttatattat tttaagccta gttgcttttt aaccccttcc
     8281 actaagcctg tttttaactc ttggcttggg tgtttgggga ggtggcttct tttgcccttg
     8341 tagtagagtt tcaaatgctt tgatccattt tcaacctcta ccccattagc ctttagccac
     8401 cttaggaatt cgctttgctt cactacctcc tcctatttgt ttaacttggg ttcattatat
     8461 gcaaaaatgc taactttgtc aacagaaagt tagcaaaaat gctaattttt ttgttgaggt
     8521 gaaaatggtt agctatccaa ttactgaaat tggtgaaatg cttattgcaa ccgatgggcg
     8581 agacttttta ttcagaccga gtttcaaaaa tatctacaaa attggaagcc cacaagaaat
     8641 tgtaaaaatc tatgcactat tgcacggctg tgagattcga gagatattgc cgcacatttt
     8701 aaccaaatcg gagtctcatc aatcttactt ttggtcagtg ctgaattcgc ctgtttttgg
     8761 cagaaaaatt ctgcaaaacg caatgatcgt gatgtcgtgc tgttgcgatg atgatatttc
     8821 cctgttgatt ggcgagtggt tgccgtcaaa gtctggcgtt aggtacaagt tgggtaaaat
     8881 gccacctgag acaattatca attttgcaaa aaatttaatg ggtcacggag tgattggttg
     8941 ctgcgaattg ccaaagaaag aacaatctgc aaaaaatgaa ttttcagaaa gttttgatgc
     9001 tgttgagtac ataagtttag cccgaactca tttcaatatg agccgcgaag acgctgaaaa
     9061 tctcacgatg accgaattgc agcaacttct aaaaagtcaa atgcctgccg aaaataatag
     9121 ctatggacag ttcaccgaag aagagtacga cagaattatg gcggaatatg agaaaagaag
     9181 agcggcttaa atagccgcta acatttaaaa gaacctacct gatagaacgg gagtgaaatc
     9241 cttgtaatgt gctgaataaa aaagctctct tatgtcattg agtagctcaa attcatcttt
     9301 ggatcttgcg ttgcagattg ccacatagtc atctacgcag gataaaatac gttcaatact
     9361 gacttctttt atccagcata cttcttggtt ttcattcagc cagttggcaa agtcttgttt
     9421 agtgcagtct tttttcataa gttctccttt ttgattattt gcaaaaaaaa tcatatcaaa
     9481 tcatccgttg ttatctattg gcgaaaataa t
//
LOCUS       DANLXK010000096         9367 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.097, whole genome shotgun sequence.
ACCESSION   DANLXK010000096 DANLXK010000000
VERSION     DANLXK010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9367
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..196)
                     /locus_tag="PXD88_001947"
     CDS             complement(<1..196)
                     /locus_tag="PXD88_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6281493.1"
                     /translation="MPTKPHKEYHELVELLISRGMLINDKSYAEKKLSQVGYYRLSGF
                     WHISRKPNQDGGLSENFLENV"
     gene            complement(408..2525)
                     /gene="spoT"
                     /locus_tag="PXD88_001948"
     CDS             complement(408..2525)
                     /gene="spoT"
                     /locus_tag="PXD88_001948"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL6281494.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(2635..2916)
                     /gene="rpoZ"
                     /locus_tag="PXD88_001949"
     CDS             complement(2635..2916)
                     /gene="rpoZ"
                     /locus_tag="PXD88_001949"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL6281495.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3019..3516)
                     /locus_tag="PXD88_001950"
     CDS             complement(3019..3516)
                     /locus_tag="PXD88_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL6281496.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(3541..4563)
                     /locus_tag="PXD88_001951"
     CDS             complement(3541..4563)
                     /locus_tag="PXD88_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6281497.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(4603..6033)
                     /locus_tag="PXD88_001952"
     CDS             complement(4603..6033)
                     /locus_tag="PXD88_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL6281498.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6138..7061)
                     /locus_tag="PXD88_001953"
     CDS             complement(6138..7061)
                     /locus_tag="PXD88_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL6281499.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(7178..8605)
                     /gene="miaB"
                     /locus_tag="PXD88_001954"
     CDS             complement(7178..8605)
                     /gene="miaB"
                     /locus_tag="PXD88_001954"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL6281500.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(8822..9322)
                     /gene="crr"
                     /locus_tag="PXD88_001955"
     CDS             complement(8822..9322)
                     /gene="crr"
                     /locus_tag="PXD88_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL6281501.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
BASE COUNT         2577 a         2127 c         1804 g         2859 t
ORIGIN      
        1 gtacattttc gagaaaattt tcgctaagcc caccatcttg attaggcttt ctagatatat
       61 gccaaaatcc agataaacga taatacccta cctgagataa ttttttctct gcatagcttt
      121 tatcatttat gagcattcct ctagatatga gtagttctac taattcgtga tactctttat
      181 gtggttttgt aggcataaaa ttgaaggcat tttaagaaag gcaaggacgt agcttgacac
      241 tctaagtcga ttacatttag taaacctcag ggacaggggc tacgccacga ttgcaaggga
      301 ttatacattt tagctgatta aagtcaaaag gtttcatcaa ttaataatag caatactgta
      361 cttttaagga ctataattgc aaaaaactga taaaatttta ccgcttgtta ctgcttacgg
      421 gccgctttta caacaccttt tacacttaat agcttacgga gaatcagctc agaatgctct
      481 ttattttcca cagaaatttg tactctcact tgatagatat ttccttctct tgcctcgcta
      541 ttaatgctgc caatgttgct atttaatttg gcaagcgttg atgtgatccc cgcgagtacc
      601 cctggttcat tgataatatc cagtacgatt tccgtttcaa attgaatcgc tttttctttg
      661 gcaatttccc attccacagg taaataatta ctcggctctg ttgcgtaatc tttcacatta
      721 ccacaacaag cattgtggat tgccaatcct ttacctgaac tgacgtgagc aataatttca
      781 tcacccggta taggtaagca acagtttgca aaactgataa ggcggttctc aatcccttca
      841 attttaagcg gttgattatt ttctggatta ccatcagtat caattaatag tggctcccct
      901 aataagcgtt gagcgataac attactcatt tggttaccta gaccaatttc agccagtagc
      961 tcatcaaagc ttgataaacg tagctcgtct aatacggatt gaatagtttc tgaacacaat
     1021 tcatcaagtg agcgtaaatt cattgcccga actagctgtc tacgcccaag tgcaatcgcc
     1081 tcatcgtgct gctgattttt aagcgattga cgaattttag ccctcgcctt accacttact
     1141 acaaaattta accacgatgc atttgggcgc ttaccttgct cggtaataat ttccaccgtc
     1201 tgtcctgttc gtagcggttc tgaaagtgga tacggattgc gatcaaccat cgcacctaca
     1261 caacgatccc caatgcctga atgcaccgca taggcaaagt caatagcggt agcattcgcc
     1321 ggcaattcaa caatacgccc tttcggggta aagacgaaaa tatcgtcaga gaacagatcc
     1381 gatttaacgc tatcaataaa ttctgctgta ttgccggcac tgttttgcaa ttcaacaata
     1441 ctttgtagcc attgctgggc tttgagttga acggtcgtgt tatggtgcga ctcgccctct
     1501 ttgtaacgcc agtgagctgt tacccccata tccgccattt tgtccatatc ttcggtgcga
     1561 atctgtacct ccaccggtac accgtgcggg ccaatcatcg aagtgtgtaa agattgatag
     1621 ccgttcggtt ttggcacggc aatataatct ttcacccgtt tcggacgagg cttatacagt
     1681 gcgtgcatct gccctaatac acggtaacaa ttatctacat tatcaaccac tactcggaaa
     1741 gcataaatat ctaaaatcga atgaaaatgt tgatctttct ggcgcatttt ttggtaaatg
     1801 gaatagagat gtttttcacg cccatacaca cgggcttcaa tttgcacctc ttctaaccga
     1861 ccacgaatat catcggcaat gcgttgaatt agctctttac gatgtcctct ggcactggca
     1921 atagccattt tcagtacccg ataacgttgc gggtgcattg cctcgaagcc taaatcttcc
     1981 aactcgtttt taatatgctc tattcccaag cgatgtgcca acgggctata aatctctaag
     2041 gtttctttcg ctatacggcg gcgtttatcc ggacgcaaag caccaagcgt acgcatatta
     2101 tgggttcggt cggcaagttt aattaacaca acccgaatgt ctttggtcat tgccaaaatc
     2161 attttacgga agtttgccac ttctgcctct tggcgggtgc ggaattttaa tttatccagc
     2221 ttagaaacgc cttgtacaat atctgctacg ctctgtccaa attccgccgc cagttcttct
     2281 tcggtgtaag gtgtatcttc aatcacatcg tgcaacaaag ccgcaatcac cgcttcttga
     2341 tcgagcttca tttccgcaat aatcgacgcc actgctaccg ggtgagtaat atagggctca
     2401 ccgctagagc gtgtttgtcc ctcgtgagca tcacgggcta tcacataagc acgttttaca
     2461 cgctcaatct gctcgggtgg caaatagcct tgaataattc gatctaaagg ttcaaaaaga
     2521 tacacgttat acctcaacaa cagaaataaa aatggacaac gaatttgcaa attttgagga
     2581 aaatcctacc gcttgcagac tcaattgtcc attctctatt tacgaaaaat aaaattacgc
     2641 ttcgttgctc atttcagtta aaaatgaaat cgcctcttgc tccgccgctt cttgcttaat
     2701 agagtcgtga ttttccagct gatccataat gtcagttgta attaaacctt cttcaatttc
     2761 acgtaatgca atcacggtcg gcttatcgtt ttcttcaggc acaagtggct cacgggtgtg
     2821 aagttgtaat tgtcttgcac gacgtgcagc aattaagatt aaatcaaaac ggttgccaat
     2881 tttctccgct gcttcttgta cggttacacg agccataaat ttactccaaa gatttattcg
     2941 gttttattca taaaaagatt gcgaattata cagaaattcc gccaattccg caatgaaagc
     3001 gggctaaatt cacaaaattt atttggtatt cagtaaaatc gccaataatt cagcctcaac
     3061 ctctttgccg aattttccca ttctaaaatc ggcttttagt tgctcgaatt gctcagggtt
     3121 cgctgccatt ttatctttta aaaattgcgg aaattcagat aacactaatt ctgttttgcc
     3181 attacgaata tcaaaaatag ttggaatttt ttgcgcagaa atgaccgctt gttgctgttc
     3241 atcgctgtca aaatgtttgc gttcctgatt atctttgcga gccacatatt tcaccttaat
     3301 gttaggattg agctttgcca ttcgctggaa ataagccaca atttccacac aatcggggca
     3361 atatggctct gccattacca gccagtcccc ttgcacgcca acagcttgca gtttttcttc
     3421 cgtatctgtg gaaagcttga cctccacata cacttctaat tgattttcac gatcttcatc
     3481 gctgttaaat tctaaatatt cgtaaaaatg tgccataatt ttgtcttttc ctatctcatc
     3541 ttaaatggat ttacgccata aaatttcaca atcaacttta acgtcatcta ttttctgttg
     3601 cgctaacttt tgctgaatta attcaaaggt acgttcggca atttgttggt ggtcttgctt
     3661 aattgaatga atatgaaaag gtagtgcatt cagtaaatgg tgatcatcaa aggttgctaa
     3721 atgcagttct tgagtcaata atttatccat ttgttggtgt tcagtcagat agcgcattac
     3781 tccctcaagt agggtaaaag aggctgtgaa taccgcttct gggagcctgc caagtttttc
     3841 aactatctga gcgaacattt gatagcccga ttccggctga tagtcttgat gcagaaccca
     3901 attttcatca agtgccaaat gtgactgctc caaaccttca cggaagcctt ttaaacgatt
     3961 ttgacttggc gagagtgaaa gttgtccacc taagtaaaaa aactctttta agtgataagc
     4021 ccgtacaata ttttccacca acatactgat actttgtgta tcattactgg tgatagaagg
     4081 gatattcaac ccagaaatat agcggtctag ctgtaacatt ggggtatatt gtgccgcatt
     4141 ttgataataa gtcggctcat tatgtgtcgg agcagtaatc agtaaatcta cctgtctgtc
     4201 taataaacgc tctatcgctt tcttctcacc ttcaaaggta tcatccgagc aagcgatcac
     4261 tagctgtaac ccgttttcac ggcataattt ctctaaggtt cttgaggtca gagcaaagcc
     4321 ataattcgtt aaatcgggaa tgactaaacc gatcacattc gtgcgttgag cctgtaatga
     4381 ttttgcatat acattagcac gataaccgtg ttttttagcg atctctttca ctttttggca
     4441 ggtttcggat ttgattctaa aatcattgcc ccgcccattt aaaatcatac tgactgttgt
     4501 tttagatacg ccgctgagtt ccgcaatatc actgagcgtt aggcgttttt tagtcacact
     4561 tatctccttt tagcataaaa atgggcatta ctgcccattg ctttattcta cgctaattgg
     4621 caatactttt gctactttca cttgaatcgg acgagagctt tttacgacat tttcacgctt
     4681 agcgataaaa aagcgtgaag tcagcacttt ttccccgccg tttacgaaaa tttccaccac
     4741 agaacggtca aagaaaatct cgattgtctc taattgttca attttgcaat gacgaaccga
     4801 gccaaatttt tccatcaatt ctgtttgttc ggtttggcta cgatctaagc tcaacacccc
     4861 attttcaaaa cgtaagctga gcttttgccc ctgttcattg ctgaaaaaat ccaacacaag
     4921 cggttgattt tccacagaaa tttgcaagta ggcagtatcc aaattctcga ttgcaaaatt
     4981 ttctgacatt tcgaccgctt gtaattcgcc tacattcacg attgggtttt gtatcacttt
     5041 gccgttttgc agggaaagtt tacgaggcaa tgtcagcatt gaatgccact gatatttatc
     5101 agttgggtaa gtgagatcag gcaagccgac ccagccaaac aaaatgcgat cggaattttc
     5161 caccgtttgc ggtgcgtaaa agtcaaagcc gtagtccagc tcttcaatat gctctgcccg
     5221 taatctgttg ccgtttagct cgccaagtgc gtaagtggcg tggtagttat tttggaattg
     5281 atggctttca cgcagtttgc cttgtggcga ccacacaaac agatctttac caccaagtga
     5341 gaacagatcc ggacactccc acataaacac attgctgtta tcaaaattgt ggacttccag
     5401 ttctgcgatt aaacggggtg tggcatttaa atcgtccatt tcataaatta acgccgtgcc
     5461 ggtcaagttt tcacgctgag cccccaacac aaaacgaatt ttgccctctg cggtaaggta
     5521 aggtttcggg tcacgcacgt gttcggtgta gcctgccggt gcttggtcga taatgcaacg
     5581 cttttccaat aatttgcccg atttatcaaa aatcgcgata ttttggtgag gaatgcgggc
     5641 attatctgat gggcggcgtg tattgccggt gtaaaaagcg acaatcttat cttgccataa
     5701 aatcgcccca cctgaataac agccgtggga ttcaaacagc tcatcgggaa tcagcaaatc
     5761 ccctttactg aacgtttgaa aatcggtagt gatgaaatgc tgccaatgtt tcattccatg
     5821 taatgcccca taaggaaacc attgggcgaa aatatggtat ttttcaccat cgaaaatcaa
     5881 gccgtttggg tcattaaata agcctgtttc gggagcgaga tgataggttg ggtaaaaatc
     5941 gggatcagat aaaacggttt ggcgaagagc gtttaattcg ccctcgcttt gtgcgtgcag
     6001 gcttttgtat ttgccgttgt tgaaaatgtg catagagtgt tcctgtcatt tcagaaatta
     6061 cgatggtgca agcgtccacg cttgtaccct tttgtaaaaa atgaggcaca agcgtggaca
     6121 cttgcgccat cattacatta ttccgccaaa aatgcgtcta actccgcttt attcggtaat
     6181 gccgacatcg ccccttttgc tgtggtggct aacgcaccgg aagcatttgc tttgcggatc
     6241 acttcaacta acacagtttc atcgtgccaa ttcggcgttt gagcaagacc ggctaataat
     6301 ccgctgacaa aggcatctcc ggcaccggtg gtatccacag gtttcaaggc tttgccggca
     6361 acgacttggc tttttccgtt gaaatggtag attgcaccgt ctttgccaag ggtgataata
     6421 atcaatttct ccggatactg agcggtaata gcttgtgtgg cttgttccaa agtttctgtc
     6481 tcggttaata aggtcagctc ttcttcggaa aatttgagaa tatccgccat cgccaccaca
     6541 gaatttacca ctgttttcat ttcatcaagg ctcttccaga gcgattcacg caagtttgga
     6601 tcaaacgaaa catagccacc cgcctttttc actcggcgaa tcccttcaat ggtagtggaa
     6661 cgggatgggt cgttaatcaa ggcaatagaa cagcagtgta agaaatcacc ttggttaaat
     6721 tcaggtaaat cgccgatttc taaaaattgg tcggcactcg gatttaccat aaaagtaaaa
     6781 ctacgctcac cgttatctaa gccaacaatc acggtggaag tgcggtgctg agcgtctaaa
     6841 atcatctgtt tggtgcaaac attttctgcc tgtaacactt ctcgcataaa tttacccaga
     6901 gggtcgttac ccacacgccc gataaatcct gcctcaaccc ctaaacgaga aacgcctact
     6961 gcaacattcg ccggagcacc accggcacat tttaaatagt gatgttcgcc gtcgggaatt
     7021 aaatccacca ccgcatcgcc tgttacccaa atcttactca tctcatacac ctttaattag
     7081 tcacaaaaca ccaagctaaa acgatttagc atttattcga ttatatacta aaagaccgct
     7141 tgtacatacc tacaagcggt cattttttct ttaattttta cagattaacc acgtatttac
     7201 ctacacctaa atcatcttct ttacgagtgc gggcaatcac gctttctgcc gattccacca
     7261 cacgtaatcc catttggtct tcggtacgaa tcacttcgcc acggagtgag ttggtataaa
     7321 catcggtgat tttcacatcg acaaatttgc caatcatatc cggtgtgcca acaaagttta
     7381 ctacacggtt agtttcggtt ctgccggtta attccatcaa gtctttctta gacgggcctt
     7441 caaccaaaat gcgttgttct gtaccgagca ttgcacggct aaattgcatt gcttggtggt
     7501 tgatgcgttg ttgtaaacgg gataatcgct cttttttctc atcatcggag acattatcag
     7561 gcagatctgc cgctggtgta cccggtcgag ccgagtagat aaagctaaag ctcatatcaa
     7621 agttcacttg ctcgatcact ttcattgttt gctcgaaatc ctctgcggtt tcgcccggga
     7681 agcctacaat aaagtccgaa ctaatttgaa tctcaggtcg aacagcacgc aatttacgga
     7741 taatcgcttt gtattccaac gctgtgtggt tacgcttcat cattgttaat acacggtctg
     7801 aaccactttg aatcggtaaa tgtaagaaac tgaccaattc aggtgtatca cgataaactt
     7861 cgataatatc atcggtaaat tcaatcgggt ggctggtggt gtaacgtaag cggtcaatac
     7921 cgtcaatcgc tgccactaag cgtaataatt cggcaaaggt acaaatgccg ccatcaaaag
     7981 tttcaccacg gtaagcattt acgttttgac cgagtaaatt aacctcacgc acaccttgtg
     8041 ccgcaagttg ggcgatttca aataatacgt catccaccgg gcgggaaacc tcttcgccac
     8101 gagtgtaagg cacaacgcag aacgaacaat atttattgca gccttccata attgaaacga
     8161 atgctgtagg gccttcggct tttggctccg gcaagcggtc aaatttttca atttccggga
     8221 aagaaatatc gacaatcgag cttttaccgc cacggatttg gttgatcatt tcaggcaaac
     8281 ggtgcaaagt ttgtggcccg aaaacaatat ctacataagg ggcacgatca cggatatgct
     8341 ccccttcttg tgaagccaca caaccgccaa caccgataat caggttcggt ttatcttttt
     8401 tccagttttt ccaacgcccg agttgcgaga atactttttc ttgtgctttt tcacggatag
     8461 aacaagtgtt tagcagcaac acgtctgcat cttcagggtt ttcagtcagt tcaaaaccgt
     8521 gagtagagtt taggagatcc gccatttttg atgagtcgta ctcattcatt tggcagcccc
     8581 aagtggtaat atgtaattta gccataacgt ttaaaattaa taaataattc aataacttag
     8641 aaaagaaaag cgtaaagcaa tttattattt ttgacttaaa ataaaccctt tacgcaaaat
     8701 ttgtggcgtt attttacctt gttgcctatt ttttatctat aaataatcgc catttatccg
     8761 attttaccta aaacaaaaaa gccacgatct tccatcgtgg cttccagcta agtaggaggt
     8821 attatttggt taaggttaaa accacgcttt caccggcaac aacttggcca tttaatttag
     8881 ataagttgct gatttcatcc atatttgaaa tcacgattgg tgttaatact gatttggctt
     8941 tgccttcaag tagagctaaa tcaaatttaa tgatcggctc gcccactttt acggtttgac
     9001 cttcctgtgc aaggcgagta aagccttcgc cttttaattc aacagtatca ataccgaagt
     9061 gaacaaataa ttccacgcct tcttcagatt caatcgaaaa agcgtggttg gtttcaaaaa
     9121 ttttgccgat agtcccattt actggagcaa cgatagtgtc tccactcggg cgaattgcca
     9181 caccgtcacc tacaattttt tcagagaaaa caacatcagg cacatcttca atatttacga
     9241 tttcacctgt taatggcgca tagattttga tttcttgact ctctttttgt tttgagccga
     9301 ataatttatc aaataaaccc atcttaaaat ctcccttaga tattagatac aaaattctcg
     9361 tacattt
//
LOCUS       DANLXK010000097         9062 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.098, whole genome shotgun sequence.
ACCESSION   DANLXK010000097 DANLXK010000000
VERSION     DANLXK010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9062
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(96..171)
                     /locus_tag="PXD88_001956"
     tRNA            complement(96..171)
                     /locus_tag="PXD88_001956"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(136..138),aa:Asn,seq:gtt)
     gene            complement(177..252)
                     /locus_tag="PXD88_001957"
     tRNA            complement(177..252)
                     /locus_tag="PXD88_001957"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(217..219),aa:Phe,seq:gaa)
     gene            complement(384..1475)
                     /gene="mltC"
                     /locus_tag="PXD88_001958"
     CDS             complement(384..1475)
                     /gene="mltC"
                     /locus_tag="PXD88_001958"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL6281502.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            complement(1492..1761)
                     /locus_tag="PXD88_001959"
     CDS             complement(1492..1761)
                     /locus_tag="PXD88_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL6281503.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            complement(1765..2910)
                     /gene="mutY"
                     /locus_tag="PXD88_001960"
     CDS             complement(1765..2910)
                     /gene="mutY"
                     /locus_tag="PXD88_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL6281504.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            2994..3386
                     /locus_tag="PXD88_001961"
     CDS             2994..3386
                     /locus_tag="PXD88_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL6281505.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            3387..4256
                     /locus_tag="PXD88_001962"
     CDS             3387..4256
                     /locus_tag="PXD88_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6281506.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            4272..4985
                     /gene="sfsA"
                     /locus_tag="PXD88_001963"
     CDS             4272..4985
                     /gene="sfsA"
                     /locus_tag="PXD88_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL6281507.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            5046..5567
                     /gene="hslV"
                     /locus_tag="PXD88_001964"
     CDS             5046..5567
                     /gene="hslV"
                     /locus_tag="PXD88_001964"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL6281508.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            5824..7149
                     /gene="hslU"
                     /locus_tag="PXD88_001965"
     CDS             5824..7149
                     /gene="hslU"
                     /locus_tag="PXD88_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL6281509.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            7225..8103
                     /locus_tag="PXD88_001966"
     CDS             7225..8103
                     /locus_tag="PXD88_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL6281510.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(8173..8889)
                     /locus_tag="PXD88_001967"
     CDS             complement(8173..8889)
                     /locus_tag="PXD88_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL6281511.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
BASE COUNT         2689 a         1923 c         1829 g         2621 t
ORIGIN      
        1 gaacgcataa tactaaaaat tgagcaattt cttagtagtt agccggaaag ctcaaaaaga
       61 aaaccctgat gattactcat cagggcttca gaatatggct cctcctgcgg gactcgaacc
      121 tgcgacatat ggattaacag tccaccgttc taccgactga actaaggagg aattgatggt
      181 gcctcgaggc ggaatcgaac caccgacacg gggattttca atcccctgct ctaccgactg
      241 agctatcgag gcaacgtcgt tgcgtggtgc attatgctga tttcagcttg caacgtcaaa
      301 cgtttttttg caaatttaaa aaaaccgctg ctcaaatgtg ctttttttat acttttcggc
      361 taaaaaacag cataattcac acattaacga atattgcgat atttctctct ggcggtggtt
      421 acttttctta aataatttct agcttgagaa gatggatgag cagtggttaa aattcgataa
      481 accgcatcag acgaaagatc gttaattcta tcaatcgcag agtatcggtc tgaatcaaac
      541 actcgtaata ccgcacctgc tccgctattg tatgcagaaa tcattgcata gcgtttagcc
      601 acaggatctt caattccatc taagtattca tcacgcaaaa tagtcaaata aagcgtacct
      661 gcatcaatgt tatttgatgg attataaaga tattcacgac ttggctgccc tcccatacct
      721 ttacgggcaa aaatatcacg cccggcggta cgaggtacaa cctgcattaa gccaatcgca
      781 ttggcatagc tgatggcata agggttgaat gctgattcga cttccataat ccctaaaatc
      841 aaacttggct caataccata ctgcttcgcc attttacgca ccagcggtaa atattgtctg
      901 gcacgtactt caatgtgtcc tgccaccatt ttaatcgtta caaagctcac agtttgacca
      961 tttttcaaac ggcgtgtttg caccttattt tgcaacaaat aagtcgcaaa atcattggcg
     1021 atggcaacat tggtaatatt tcgcccgaat tgatcttcaa cctgtccgtt taggaaaggg
     1081 ttagagctaa tcggtgcatc gcctgaggca aataaatcaa tccctttcgg gtctctgccc
     1141 attaataaag tatgaataat cgaattgcgt agatgattct gattccctaa agtctcaatc
     1201 gtaatcaccc cttcttcaaa cgaaatatgg ctacgggtgt aaaacttatc cgtatatttc
     1261 acataatctt tcttactggc aactaacagc tcgttacttc cccaaatatc atcaatattg
     1321 tgagaaaact gccctgccaa aatatccaaa ccattggtat ctttagaata atctactcgg
     1381 gtagattttg gcttcttagt cgatttattg ctcccacaag caataagaaa cggaataatt
     1441 gccaacatcg gcaaatattt agcatatttt ttcattgtga tttaaccttt attattcgac
     1501 cggcttatag ccttcgatga tgatctcttt accttcaaat aaaaaattga ccatctcttg
     1561 ttcgagcagt ttacggtgtt cggggttcat catactgagt tttttctcat tgacgatcat
     1621 tgtctgtttt ttaatccact cagaccacgc ttgcttgctg attgagtcaa aaatacgctt
     1681 acccagctcc cccggataaa gttgaaaatc taaaccttct gcctcttgtt ttaaatattc
     1741 gcaaaatacg gtacgagcca taatttaatc cttaatctca tttttcacac tgaatgccag
     1801 ctcatctaaa atacgtttaa ccggcgttgc taaacccact tcgttatgtt ggtgcaaatc
     1861 ataccaataa tccgcatttg aagatacctt agaaagataa tttcctgctt tttcttcgac
     1921 aacaagcggt gaattttcac ttgttttttt caaatcggtt tctactaaaa ccggggtaat
     1981 atccaaatga aaatggctaa aagtatgcct aaatgcagtt aattgctgtg aaatttgcaa
     2041 attttgcata aaatcagacc gcttgagagc ctctaagctc tcaaattgcg gaaacacaaa
     2101 taagcccccc caaatgcctt ttgcttcccg tttttgtaac agcactttcg agccgctttt
     2161 cagcactaaa aaataggttt gacgctccgg caaggttttt ttcggtttct tggcaggaaa
     2221 gctatcccac gcttgcattg cattcgtttt acaattttct tgtagcgggc agagcaagca
     2281 cttaggcttt gtacgggtgc aaatcatcgc ccctaaatcc atcatcgctt ggttaaagtc
     2341 tgccacttgg gtatcaggcg tcacactttc gcttaattgc caaaggcgat tttccaccgc
     2401 tttttcaccc gcccagcctt ctactgcaaa atagcggctt aacacccgtt tgacattgcc
     2461 atctaaaatc gggtgtgggg catctaacac agaagacaaa atcgcccctg cagtacttct
     2521 gcccactccg gttaatgcca acacatcatc aaatcgggta ggaaattcac cgccaaactc
     2581 atctcgaatt tgaattgccg ctttatgcaa atttcttgcc cgagcgtaat aacccagccc
     2641 tgtccacaaa tgcaatactt catcaatcga ggcattagct aagtcaatta cggtgggaaa
     2701 tcgttccata aaacgtgcaa aataaggaat aacggtcgct acttgagttt gttgcaacat
     2761 tacctccgac aaccaaacct gatacagcgt tttattttgc tgccaaggta aatgtttccg
     2821 cccatattgc tcaaaccaag ctaaaacagc tttggcaaac ggatcagaag cttttgcttt
     2881 cgctaaagga aatggggaat tgctgttcat taaaaatctt gaaatccgaa aaataaatta
     2941 tcatactgca agcggtcagt tttaccaaaa attttacaca ttaaggaaaa aagatgaaat
     3001 cgcccatttt aggtttccac cacattgcat taattgtttc cgattacgaa aaatccaaac
     3061 atttctacac ccgcatttta ggggcagaga tcatcgcaga aacctaccga gagcaacgtg
     3121 ccagctataa attagattta cgctttaaag atggctcaca aattgaatta ttcagttttc
     3181 ctgaaacgcc gcctcgtttc acctcgcccg aaacctgcgg gcttcgccat ttggcatttc
     3241 gagtggaaaa tattgaatat gccatcgcat ttttagaaca acatcaatta ccgcatgaag
     3301 ggatccgaat tgatgagatc accggcaaac gcttcacgtt tttccgagat ccggacgatc
     3361 tgccgttaga gttttacgag gtctaaatgt tatatttact gattgcaacc ctgatttggg
     3421 cgagttcatt cattgtaggt aaagtggcga tttcagcctt tgaccctgtc caaattatgc
     3481 aaattcggct gacgttagcg gcgtttatcg ctctgccgtt ttttattcct gcgtataaaa
     3541 aaatccagaa aaatcagcac attaaagtct ggctgattag ttttctcact tttcctctgt
     3601 acgtgatctt acaattttcc ggcttgaaat taacttccgc agcaagtgcc gtggcactac
     3661 tcgggctaaa cccgctttta actgtgttag tcggctattt ttgtttcaaa aaacaggcaa
     3721 ccaggctcga ttttatccta agtttatttg cctgcttggg gattttaatt atggcatcgg
     3781 gtagcgatga tagcggttca atcaatgtat taggattatt gcttgtaacc ttaggcagtt
     3841 taagttttat tgtgggaatg tacctcagca aagagattct gcaatcagta aaagtgatcg
     3901 atttaaccaa gatcatgctg gtgcaagggg caattaccgc cttacctatt accttactct
     3961 ttgcagaaaa ttggcaactg ccaaccagtc tctcagcatg ggcgagcgta gcatatttag
     4021 gcattatttg taccagcttg gcaatattgt tatggaacaa aggcatcagc caatcttcgc
     4081 ctattcttgc aggtattcta ctcgcacttg aaccggtatt cggactgcta atggcattgg
     4141 tctttttatc agaacagctc agtttagtga cttgggttgg gattattatt gttatttgca
     4201 ccgccttact ctccgttttg ctaccgatga tgaaaagata caagcggtta atttaacagg
     4261 attttttgca aatgaaattt ccccctcttt cccacggcat tttacttcgc cgttataaac
     4321 gttttcttgc cgatattcag ttgccaaatg gcgaacaaat taccctccat tgcccaaata
     4381 ccggtgcgat gacaggctgt gccaaccccg gtgatacagt ttggttttcc acctctcata
     4441 accccaaacg taaatatgct cacacttggg aactaaccca aacccaagcg ggggatttta
     4501 tttgtgtcaa taccttgaga gccaatcagc ttgtacaaga agccttggaa aatcaatgga
     4561 ttagcgagct tgcggattat cagcacattc tgcctgaaca aaaatatggc agtgaaaaca
     4621 gtcggattga ttttttgctc aaatcggacc ttctgccgga ttgttttgtg gaagtgaaat
     4681 ctaccaccct tttaaccgaa aacggtgtgg gaatgttccc cgatgccaaa accgagcggg
     4741 ggcaaaaaca tttgcgggag ctgacgaaaa tcgctgaaca gggcttacaa gcggtcattt
     4801 ttttcgctat tttgcacaca ggtattgaac ggtttgaagt ggcaaagcag atagacccca
     4861 aatatgccga attattcgct caagccattg cacaaaaagt gcaggttctc tcctataaaa
     4921 tggcaatttc attggaaaac gggcaaccta ttgcggcaac cttaacaaag aaatgtgagt
     4981 tttaagcttg aaaacacaca gcatatcccc atataagcca aagtttttaa aaagaaggat
     5041 ttagtatgac aacgattgta tgcgtgcgta aagacggaaa agtggctatc ggtggtgatg
     5101 gtcaggcaac gcttggaaat tgtatcgaga aaggcacggt gcggaaagtt cgccgtttgt
     5161 ataaagacaa agtggtgaca ggctttgccg gctcgaccgc tgatgccttt attttgcgtg
     5221 atttattcga gaaaaaattg gagttacacc aagggcattt agtgaaatcg gcagtggaac
     5281 tggcaaaaga gtggcgtacc gagcgtgctt tacgccgttt agaagcgatg atgattgtcg
     5341 ccaatgacag cgagttttta ttggtttcag gttcgggcga tgtgattgag ccggagcaag
     5401 atgtgctggc gattggttca ggcggtaact atgcgaaagc cgctgctctt gcgttattac
     5461 gcaccgaaaa taatttatct gcaaaagaaa tcgttgcgga agcgttaaaa atcgccggcg
     5521 atattgatat ttacagtaac tacaatcacg tgattgaaga agtttagtta aataactctc
     5581 tccccttgtg ggacaaatgt ttacatttga acgttggctt tgccaacggc tccacaggag
     5641 cgagcgtagc gagtattgag accgaaaaat atttcgttca gaaatatttt tcagagagag
     5701 gggttaatgc aaaacgttta agaaaaaaga ccgcttgtta ccctctccct gatttttctt
     5761 ctgaacaaag aaaaatctgt ccctctccca caaggggaga gggtaattaa tttaaggaat
     5821 aacattatgt caatgacacc ccgtgaaatc gtctcagaat tagacgcaca cattatcgga
     5881 caaaaagatg caaaacgtgc ggtagcaatt gctttgcgta accgctggag aagaatgcag
     5941 ttgccggaag atctccgcca agaagtgacc cccaaaaata ttttaatgat cggtccgacc
     6001 ggtgtgggta aaaccgaaat cgcccgccgt ttggcgaagc ttgccaatgc cccttttatc
     6061 aaagttgagg caaccaaatt cactgaagtg gggtatgtgg gtaaagaagt ggattcgatt
     6121 atccgtgatc tagctgatgt gtcgatgaaa ttagtccgcc aacaagcggt cgaaaaaaat
     6181 aaaatgcgtg cacaagatgc agcggaagat cgcattttag acgtattatt gccaccggcg
     6241 aaagatcagt ggggaaatgt gcaggaatcc gacaataatt ctacccgcca aactttccgc
     6301 aaaaaattgc gtgaagggca attagacgat aaagagattg aaattgacgt ggcagctcaa
     6361 gtgagcgttg agattatgac cccgccggga atggaagaga tgacctcgca attacaatcg
     6421 ctgtttgagg gaatgtcgcc aagcaaaacc aaaaaacgca aaatgaaaat caaagatgcg
     6481 ttaaaggtga tgcttgatga agaagcggcg aaattagtaa atcctgaaga gctgaaacag
     6541 caagcgattg aagcggtgga acagcacggt attgtcttta ttgatgagat cgacaaaatc
     6601 tgtaaaaaag gcgagcattc gggtggagat gtttctcgtg aaggtgttca gcgtgattta
     6661 cttccaatca ttgaaggctc aacggtaaat accaagcatg gtatggtgaa aaccgaccat
     6721 attctgttta tctgctcggg ggcattccaa gtggctcgcc cgtctgattt actcccagaa
     6781 ttacagggtc gcttgccgat tcgtgtggag ttaaaatcgc ttaccaaaga agattttgag
     6841 cgtattttaa ccgaaccgaa tgcctcatta accttgcaat atcgtgagtt gatgaaaact
     6901 gaaggcgtgg agattgagtt cactaaagac ggtatcagcc gtattgcaga aagtgcattc
     6961 cgtgtgaacg agaaaaccga aaacatcggg gcaagacgtt tacacaccgt gcttgagcgt
     7021 ttgatggacg gcatttcgtt cgatgccagc gaacgccgtg gtgaaaaaat catcattgat
     7081 gaaaactatg tttccgaagc gttaaatgac gtggtggaaa acgaagattt aagtcgcttt
     7141 attttgtagt tttaagttat acaagcggtt attttagcga aaaatcttgc gaattagccg
     7201 cttttcatat tgttagttgt aaaaatgaaa aatctataca aatggcctgc tgcacaatcg
     7261 ctttatccaa atcagggaaa gaagtcttac gcagggaaac gttttcgtta ccgtcttcgc
     7321 tcttggttgc atcattccaa aatcaagcaa tttgagcagt tcgttacaca aaatccacaa
     7381 ctgattccgc tcttaaatgc tcgaccaaat tacagctacc ccgtggctca ccgcttttta
     7441 gataagcgtt tcagtgcaaa acaacgctta caaaaaatca cagataacct gctgttttta
     7501 ccgcaaaaat tggctcattt accacctcta tgggaacaag cggtcaattt tggtgaaatt
     7561 attgcagatt ttgagttatg gcttaacatc aatgaacatc agccgatgga aggtttttgg
     7621 gcattagaac ttcgccacag accgactaat cagctagttt atttattaac atttggtaag
     7681 ttagatgaag ccttgttgat agccgtaatt caaggtccga attttgaagg ttcaaaagag
     7741 ctggtgaaac aattaaccaa aagttgccac ggcttacgcc cggcctattt aatggttgaa
     7801 acgatgaagg ctttaacggc tgttcttggc tatcagagtt tactaggcat tccacagaaa
     7861 taccagaata aatcccgctg ggtgcaaagt aagcgctatg tagtggatta tgatgctatt
     7921 tttgcggaat cgggcggaaa gccgggaaat tattggcagt taccccttga attggaaagt
     7981 aaaaaaatag atgaaattcc aagcaaaaaa cgctcaatgt atcgcaagcg ttatgaaatg
     8041 ctagctaatt taaagcagac catggagctt atgcttaaaa cttatactgg cttaaatggg
     8101 taaatcaaag aatacaagcg gtcaaaatct gcaaaacttt gcaaaacttt gcaaaaaatg
     8161 accgcttaca agttacttgc cgcccatcca tttatcatag attttttgat attcgccatt
     8221 ctctttaatc gtttttaatg ctgcattgaa ttgatcaact aatacttggt ttttcaagtg
     8281 agttgcaatg cctaaaccat caccaaaata gtttggatta ttgattttct cccctacaaa
     8341 atctagccct tcgtgttttc ttgccatctc agccaatacc ggcacatcgc caaaaatagc
     8401 atcaattcgc ccattttgca catctaaaat agcattttga taagaggcat aagatttcac
     8461 attgtactct tttttctctt ttgctaaata gtgttggtaa gtagtcccat tttgcacacc
     8521 aatcgttttc accttagcaa aatctgtatc ttttttcgca atgaaggcag cagagcttgg
     8581 aaagtaaggc tcgctaaata atacttgttt cttacgtggt tccgtaatac ccatacctga
     8641 aattgcagca tcaaattgtt tttgttttag gctttggatt aagctatcaa aaggttggct
     8701 atggaatgta caatttgcat tcatctcttt acagatagca tttgcaatat ccacatcaaa
     8761 accgataatt tctcccttct cttcggtcat ttcaaatgga ggatagcttg gctccatcac
     8821 aaatttgata tcttgtgcct gcgcagtaac cacacacccg aataaaaggg tcaaaagtgt
     8881 ttttttcata aaaagtccct gtgttttcat tataaggatt accactttaa cgcagttact
     8941 ttcttaaaaa aagtcttctt ttcataaagt ttgttttatg tcatacaaac acatcaaatt
     9001 gagatgtagt ttctcaatcc tcttgattcc tctatctcaa aaaaacaacc caaaagaaaa
     9061 aa
//
LOCUS       DANLXK010000098         8934 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.099, whole genome shotgun sequence.
ACCESSION   DANLXK010000098 DANLXK010000000
VERSION     DANLXK010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8934
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..209
                     /gene="zapB"
                     /locus_tag="PXD88_001968"
     CDS             <1..209
                     /gene="zapB"
                     /locus_tag="PXD88_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL6281512.1"
                     /translation="VLDQLEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTLRSEY
                     EQLKVEQQNFQDRLRSLLGQIDNV"
     gene            265..846
                     /locus_tag="PXD88_001969"
     CDS             265..846
                     /locus_tag="PXD88_001969"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL6281513.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(937..2055)
                     /locus_tag="PXD88_001970"
     CDS             complement(937..2055)
                     /locus_tag="PXD88_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL6281514.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2145..3593)
                     /locus_tag="PXD88_001971"
     CDS             complement(2145..3593)
                     /locus_tag="PXD88_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL6281515.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3740..5437)
                     /locus_tag="PXD88_001972"
     CDS             complement(3740..5437)
                     /locus_tag="PXD88_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL6281516.1"
                     /translation="MLLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSAT
                     VIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIF
                     GPLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
     gene            complement(5581..6132)
                     /locus_tag="PXD88_001973"
     CDS             complement(5581..6132)
                     /locus_tag="PXD88_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL6281517.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEF
                     WSNNSALIISLLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
     gene            6231..7040
                     /locus_tag="PXD88_001974"
     CDS             6231..7040
                     /locus_tag="PXD88_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL6281518.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
     gene            complement(7057..7749)
                     /gene="tsaB"
                     /locus_tag="PXD88_001975"
     CDS             complement(7057..7749)
                     /gene="tsaB"
                     /locus_tag="PXD88_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL6281519.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(7836..8918)
                     /gene="aroG"
                     /locus_tag="PXD88_001976"
     CDS             complement(7836..8918)
                     /gene="aroG"
                     /locus_tag="PXD88_001976"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL6281520.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAEAVEKRRNFAK"
BASE COUNT         2473 a         1985 c         1887 g         2589 t
ORIGIN      
        1 cggttttaga ccaattagaa gaaaaaatta aacaagctgt tgaaactatt caattacttc
       61 aattagaagt tgaagaatta aaaggtaaaa acgatgcagc gaaacaagaa aacgacacct
      121 tgcgcagcga atatgaacaa ttaaaagtgg aacaacaaaa cttccaagat cgtttacgtt
      181 cacttttagg tcaaatcgac aacgtttaat tctattttca gcacaaacgg ctaaattttt
      241 agccgttttt tatttgttac agctatggca aaactctatt tttactactc ctcaatgaat
      301 gcaggcaaat ctactactct gcttcaatct tcttataatt accaagaacg tggaatgaac
      361 actttagttt ataccgccgc tattgatgac cgtttcggtg tggggaaagt caactctcgt
      421 atcggtattt cacaagaagc caatttattt accgctgata ccaatctatt tgcggaaatt
      481 aaggcattac actcaaacaa agcgttacac tgtatcttga ttgatgaggc tcagttttta
      541 actaaaacac aggtttatca attaagtgat gtggtcgata aactcaaaat tccggtgctt
      601 tgctacgggc tacgcaccga tttccaagct gaattatttg aaggtagcaa atatttgttg
      661 gcttgggcag atgagctgga agaactcaaa accatctgtg attgtggcaa aaaagcccat
      721 tttgtcgttc gattaaatga aaaaggcgaa gccattaaag acggtgaaca aatacaaatc
      781 ggcggcaatg atagatatct ctctgtttgc cgttatcatt acaaacaaaa gttaggtaag
      841 ctataagcta caagaagcag caagcggtta aattttcggg aatttttgca aattttcagc
      901 gaaatttaac cgcttgtttg tgttatttac ctctctttac tttcctgcaa accgaatttg
      961 ctcactcatt tgtctcatca cactcgaagt ctcggcaaaa aactgttggt aagaggggca
     1021 aaggtagttg tggttttcgc tgtttgcttg ggggacgatg cggtgtttgg ggcagccgcc
     1081 gtggcaaagt atgcggaatt tgcagtttag gcaggcttgc gagagttttg cctgtttatt
     1141 ctgcccgaat tggcgttggg cggctgatga gacgatctct gccagctgct gttggttgag
     1201 gttgccgatg tggtaatcgg gatagacgaa atggtcgcaa ctgtacacat cgccacaggc
     1261 ttccaccacc agcgagctgc cacaggtcgg gcggaataca cagttgttgg agggatagcc
     1321 aagccattgc ccgagcaggt tatcaaactc gatcacaaaa atctgcccac ggtcaggcag
     1381 ccattcgtga aaaacatcca ctaaaaattg cccgtagcct tggggcggaa cggaaaaggg
     1441 ttgtaattcc cccttgtggc tttccaccac cggaatgaac tgcatataac ggctaccgag
     1501 ggctttgagg gcttgatagg tttctctgcc ccgttgccag ttgcggtcgt tcaccaccgt
     1561 gagggtgtta aattccacgc caacctcttt caataaatcg accgcacttt tcacccgttc
     1621 aaaggtcggt ttaccgttgg tggaaatgcg gtagcggtcg tgaatgtcgc tcagtccgtc
     1681 aatggataag cccaccagaa aatgattctc tttgaaaaag ctcgcccact ggcggtttag
     1741 ggcaatgccg ttggtttgga ttgcgttggt gatctgcttg ccgtttgcaa atttttgttg
     1801 atatttgacc gcttgtttgt agaaatctaa gcccagcagg gtcggctcgc ccccctgcca
     1861 cacaaaatcc acccgttggc tttggttggc ttcaatgtaa tgacgaatgt agttttgcag
     1921 cgtttcatcg ttcataaact gcgatttttc tggcggaatg gtctgttcct tgctcagata
     1981 aaaacagtac tcgcactgaa tattacagtg aaaactgctg ggttttgcca ttaggtggaa
     2041 gtaggtggtg gtcattgtat ctctaaattg taggggcgga ctttatgttc gcccattgtt
     2101 tacattaatt ttcgggcggg tataaaaccc gcctctacaa acaattatat ctcatcaata
     2161 atccgataca cccaattttc cagtgggtcg ttgaggcgtt tcatttcctg tcgcatttct
     2221 tccaacatct cttttttcac ggcttggtag gcttcgtcat aaaagaggtt gtgcatctct
     2281 tcggggtctt ttctgacatc gtagagttcg cagcggtcgg tggcgttgaa gaccaatttg
     2341 taatccttac gccgccacat tcgctgttca aaatagacaa aatgccctgc cagttggcac
     2401 aacaagcctt tgcggtcgtt gttttggctt tgtctggtta tcggcagaat actctcgcct
     2461 tggaaagcgg tcgggatcgg ttgatttgcc acatcataca cggtggaagt gagatcgtgc
     2521 aaataaacga ggttgtcatc gacttcgttc acccttgtag agtgcggatc tttaataatc
     2581 agcggaatgt tgtaggtggt ttcaaacata aactcgcctt tttcgatcat cttatgcgcc
     2641 cccatcgcat cgccgtggtc ggcggtagca acgaggaagg tattttcata gagattgttc
     2701 tcttccaaga aacggaacag ctcgccaatg gcatcgtcaa tcagcgtgat gtagccccag
     2761 aatttagaaa tcacctcttt ccaacgatct tcgctcgcct cccacattcc ccacatttgt
     2821 gaaatggtgc ggaagtggtt cggtttgccc tcaagcggtt tgaagaaact ctcgtccaat
     2881 accacttggc ttgggtcata cattgaataa tacggctccg gcactacaca cggagtgtgc
     2941 ggcccccaga agttgatcca cgcaaagaac ggttttttct catcaaggga ggcttgaatg
     3001 tattttttcg cctcgtcaat gataaaccac tctattgtct gctcgcgact gccggaaagc
     3061 aaaccacaga gttcctgcac acgcaggtgt ggattgtcgc caaaataggc tcgactgact
     3121 tcgggtgcgt catagccctt ttccgccagc cattcacgat aacggttgga gtgtgttggc
     3181 ggctgattaa acacgaggtt tttatacact tggctgcccg ggtagccata gccgtcaaag
     3241 ttatgaccgg cgatgccata atcttcggga acggattttg taccaacgtg ccatttgccg
     3301 atcacaaagg agttatagcc ctccacgccg gcaatattag ggttttgttg tggaatttcg
     3361 cctgtgccgc ctttttcgcc gtttttgata atcccgtggc tggacggcat taagccggta
     3421 aacagcgagg tgcgagccgg cccgcagacc gaagccggcg taaaggcgtt gttaaaccga
     3481 atgccgtctt tcgccaagcg atccaaattc ggggttttta ccacctgatg cccgtaagtg
     3541 ccgagcatat ctttacgcac ttgatctaac aaaatataga tgatgttatt cataatgacc
     3601 tctttaaggc ttgttaataa ccgataaatt atcaagtttc ggagatctgt tcccctcttt
     3661 agcaaagagg ggatttttga tctcgagcct tttccgttct tggtattttt atactaatga
     3721 ggagaaggct cacattcatt taattcaccg cctttttgcc tttacatttt gcaaaaaaca
     3781 cgacacaaac caccgcttgt agcacagcat acaccgccag caccattgcc ggattgccgt
     3841 ctggtgaggc taaaccgagc ggagagagga aagcgtatag cgtgaataag cccaacacga
     3901 tagaagccac tgccagtggg gcatattccc agctggttaa gtccacattg gcgtggttga
     3961 ttttgttgtc ttcgtatgga gtcgcacgtt ttaggaaaat tcctaaaatc agcattaacg
     4021 ccacatcgaa cacgaacaag ccagcttgca catacacgaa gttgattttt acatcaaaca
     4081 cccaaacgat gcagaagtag agaataacgt gtgcgagtaa ggcaatgcgt gcggctttgc
     4141 ctgagacggt tttgttgaat aagccgatga caaacagtgc cacaatcgga atgttcacaa
     4201 aaccggcgaa acgtttggtc agcaagaaaa taccgtctgt gccgaacatc agtaacggcc
     4261 caaagatcat cgtaatcacc gccattaccg cagagacttt tttcgcataa cttatcagtt
     4321 ccgcatctgt gaactgtttt ttgctgatag acggcagtaa gtctttacag taaatggttg
     4381 ccgctgagtt taagaacgag ttgaaggtac tcaaaatcgc cccgaacagt gcggcaataa
     4441 agaagccttg tagcacggtt gggaaagttt tattcactaa ttcagggtaa gacacatcaa
     4501 tcggtttcaa gccctcacct aaaatatgga aactgagtaa gcccggtaag tttaagataa
     4561 gcggtagcaa taataagaac agtgccgcaa ttaagatccc tttttgaccg gcttttaagt
     4621 ctctcgcccc caaggcacgt tgcacaatgg cttggttggt cgtccagtag aagaaatgca
     4681 ccaccataat accggtgaaa atggtcggcc aaggcactgc atcggtggca ctacccaccg
     4741 cattccattt ttcaacgtga gtagtggtga tgattttcac cccttctgcc atactgccat
     4801 tacctaaata gataagtgca aacaccggca ctaataatgc cccaatgact aacaagaccg
     4861 cattccaagt gtctgacacc gccaccgctt ttaagccacc gaaaatggca taaatcgccc
     4921 caacaatacc aatcgcaatc accgtatagg taatcgctgc cccatagctt aagccgaagg
     4981 cagtttcaag gttgaagatt ttattgaagg caatcgcacc ggtgtaaagt gcagtcggaa
     5041 tgacgatgaa aagatagaac accaaaaaca agcccgacat aatcaaacgg gtttggcggt
     5101 cgaaacggtt ttcaaagaac tccggaatgg tggtataacc gttgcggata tatttcggca
     5161 acagataaag tgccaagaag caaagcggaa ttaccgccgg cacagtccac gcaataattg
     5221 agaaattacc ggcataagag ttggcattca cgccgataag ttgctcggta gaaagggagg
     5281 ttaagaccat cgaacagccg ataaccgtag cactcaagcc acgccctgcc aagaaataac
     5341 ctttagatgt cgaaagatcg tcgtttctgg tttttagcca agagatatac ccgactaatc
     5401 cagttacaac cagaaaggta attattgtta ataacatatt cttcacctca atatgactat
     5461 ataaatgata tatcccatta gagacggcaa tagcataaat cttattttta acgatagaat
     5521 atgatgtttg tcataataga tatgtgatgg tgatcacaac tatgaataat ttatgacaat
     5581 ttaactgatt ttctttaatt ctcgccttaa tcgaatggct gtttcggttt cacaacctgc
     5641 aaattcggcg atttcacggt tagtccagtg ataattggga taacgttggt gtaaataatg
     5701 aatactgttc attacccgct cttgcgtttt ttgataggaa accattgata aacgatgctc
     5761 tgcgtcttgt aattctgtcg agagctgttt taacagagag ataattaagg cggaattatt
     5821 cgaccaaaac tcaatgaaat ttaagggggt aatacgtatc aattctgccg gctgtaacac
     5881 ccgagccgag caatggtagc gattatcgcc aaaaaaggtt ctaaacccaa aataatcgtt
     5941 ggctttatat accctcacca agctctcttt accattttca agcatatggt acagccctat
     6001 taatccgctt tttaaaaaat aaaattctct ggcgtgataa ccctgagaat aaatgacgac
     6061 tcctttttct agatcagaca ttacacttaa ttggcaagac atcaattgtt cgggggttgg
     6121 catattgttc attgattatc cttattattt tattttttcc atatatgatt gcgatcataa
     6181 tcctttattt agaaaatttt gcatacttat cacactttag gagatggatt atgacaatga
     6241 ccgtgataat tattttgatc atttgtggca ttatagtcaa tatcacttct gcactatttg
     6301 ggattggcgg gggtgtttta atgatgccga ttttacattc actgtttcct gaactgcctc
     6361 tccaagtgat ttccgcctgc tctcttacca ttgtgattgg ttcagccact atcaatttat
     6421 gcttattcca ccatcaacag ataaaaatca atcgaaaaaa tgtgttgatt tggtcacttg
     6481 cgatgatgtt aggcgtacaa attgggtttg aactcagttt tcttttctct gataacagca
     6541 ttatcgctat ctttattcta accctgctga cactttcatt taaaacccta tttcacaaac
     6601 caagagttaa agcaatagta ccacctaaac caaaagaagc agtatctaat gccacaatgt
     6661 gcagtttagg cggtttaatt gcaggtatta ccggcattgg cggcggttcg attatggctc
     6721 cgattgtcac gcaaatacgc tcggtttcac cgaaacaggt tgcagtttat actaactata
     6781 tgatggtgat tggcggaatc ggcaatttat atggctactt atcccgccct tttgtgttga
     6841 attcaacctt agcaacttgg caaatcggct atgtgaattt tgcaattgtc ggcaccgtag
     6901 tgataagttc tctctttact gtctattttt caatgaaatt acgcaatatc ttgagtcccg
     6961 aattaactac taaattactt ggtgtaatcc tattcactat tgcctgttat atgggctttt
     7021 tgcaatattt attcacttaa ccataagttc aatagattat tgcttatgag gtagtttttc
     7081 ccaagtaact tcattacgca aatacaccgg ttctatttca aaagcagatt ggatattgcc
     7141 tttttgaatc tcagtttcag caatcgaaag catatatcgg ctggaaggca aggtaatatc
     7201 actgataaca agcggtagat tttgctcaga aaattgcgaa tatgccgccc aacctgtgcc
     7261 aaccaccaca gtctcttcac tcatttggaa ttgacttatt gcgacttctg gcgaacagac
     7321 ttgttcagcc accacttcat tccattcttc accctttcgt tcaaattgag caaagtaaac
     7381 ttcattcatt cgggcatcaa ttaaggcaat tacctttgtt gcacctaatt tttggtatgc
     7441 ttcttctgcc attgctttta agttagaaac agctaccacc ggcaaattcg ctcccattgc
     7501 caacccttgt gccacactta caccgaccct cacaccggta aaactgcccg gcccacgtcc
     7561 gaatactaaa taatttactt ctttgagttc gatattggct tgattaagta attcatctac
     7621 catcggcaaa atacgttgag tatgggaacg agggctgatt tcatctaaga acgtgatatt
     7681 tccgttatac tgtaacgcta cagagcaagc ctctgttgca gtatctaaag caagaatgct
     7741 gggtttcatc atatgtttag tttgaataaa ttaaatttgc tttaaggtta aacaaataaa
     7801 gggcgaatta tattcgccct cggttcaaga aaagattatt ttgcaaaatt tctgcgcttt
     7861 tcaaccgctt cagcaagtgc gaataacgct ttttcactat cttcccagcc aatgcagccg
     7921 tctgtaatac tttgtccgta aactaacgcc tctaaacctt tgccttcaat taagtcttgg
     7981 cgaccttcta ccaagtggct ttcaatcatc acacctgaaa taaagtctga tccacctgca
     8041 atttggttgc acacatcagc acaaacgtcc atttggcgtt tgaactgctt ctggctgtta
     8101 gcgtggctga aatcgatcat cacgtgtgga cgtccgccgg atttctcaat cgcagcacaa
     8161 gccgctgcaa cggagtcagc atcgtagttg gttgcgctat cgccaccacg caaaataatg
     8221 tgacagtcag gatttcctgc tgttgaaaca atcgcagaat gcccgaattt agtgaccgat
     8281 aagaaatggt gtggcgattt tgcggaagaa attgcatcta atgcaatttt cacactacca
     8341 ttcgtgccgt ttttaaaacc taccgcacag gataaaccag aggctaattc acggtggact
     8401 tgagattcag tcgttctcgc cccaattgct ccccagctca taaagtcagc cacatattgt
     8461 ggtgtaatca tatccaaaaa ctcgccggca gtcggcacgc ttaaatcatt aatatcagat
     8521 aatactttac gggcaatgcg taaaccatcg tttaaggcaa aggtttcgtt caaataaggg
     8581 tcgttaatta agcctttcca accaacggtt gtacggggtt tttcaaaata gacacgcatc
     8641 accacttcta agttttggtt aattttcgga tcagcacgca ttgctttaat tttttgtgca
     8701 tattctaatg ccgctttcgg gtcgtgaatg gagcaaggtc caatcaccac taataagcga
     8761 tcatccgcac cgtgtaaaat tttgtggatt gattgacggg ttttagcaac ggtttccgct
     8821 gcaacatcac ttgccggata ggcttccagt aatgcaatag gtggtagtaa ttcttcaata
     8881 ctggtaattc tgacatcgtc atttttgata taagacattg tgttcactct ctaa
//
LOCUS       DANLXK010000099         8801 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.100, whole genome shotgun sequence.
ACCESSION   DANLXK010000099 DANLXK010000000
VERSION     DANLXK010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8801
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(50..823)
                     /locus_tag="PXD88_001977"
     CDS             complement(50..823)
                     /locus_tag="PXD88_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL6281521.1"
                     /translation="MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNA
                     EQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENV
                     GLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCF
                     DKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWH
                     NTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
     gene            972..5168
                     /locus_tag="PXD88_001978"
     CDS             972..5168
                     /locus_tag="PXD88_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL6281522.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(5223..6317)
                     /gene="mobA"
                     /locus_tag="PXD88_001979"
     CDS             complement(5223..6317)
                     /gene="mobA"
                     /locus_tag="PXD88_001979"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL6281523.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            6404..6673
                     /locus_tag="PXD88_001980"
     CDS             6404..6673
                     /locus_tag="PXD88_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL6281524.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            6737..7375
                     /locus_tag="PXD88_001981"
     CDS             6737..7375
                     /locus_tag="PXD88_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL6281525.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            7459..8235
                     /locus_tag="PXD88_001982"
     CDS             7459..8235
                     /locus_tag="PXD88_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL6281526.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            8245..8499
                     /locus_tag="PXD88_001983"
     CDS             8245..8499
                     /locus_tag="PXD88_001983"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL6281527.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            8501..8794
                     /locus_tag="PXD88_001984"
     CDS             8501..8794
                     /locus_tag="PXD88_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL6281528.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2912 a         1758 c         1626 g         2505 t
ORIGIN      
        1 taaatttgta aacaatatta ctaattcagc tgcttgctct cattaaacac tatcgcacta
       61 aaaccctcac tcctagcgtt tcattttgtt gaagtagagt atttatccga gcggtttcca
      121 cacataccat attttgatac gccgtttctg tcatcgcact aacggtatta tgccaaggat
      181 tccaaagtac ggtttcggtc gcattaatat gctcaacttt aatggtgcgc tgatttgcaa
      241 aatcttgaat aaaattcacc gcttgtgccg gataaataca atccacattt tcacttatct
      301 tgcgaggtga tggcacttca acttcttgat cggttagctt atcaaaacag cgagttggca
      361 agccttgcac ttccactttt tcaatatcac caatattaaa ataagagtgc aatgccagtt
      421 gtgctggttc tggatctaaa tgggtaaaat ataactcaca agtttcgcct aacatcattt
      481 ccattttcgc tttattctct aaggcaaata ccaaaccgac attttcatca gaacaagtat
      541 gctcaactaa acgccattct tgaatgcgag ctgtgccgtg ggcaggctct tttattgaac
      601 cgaaccacgg ataacaaatt ggtataccgc cacgaatcgc agagccaatt ctaaacggtt
      661 ctatctcact taaccacagc acatcttgct ctgcattata cggctgccaa cttagcaatt
      721 gtgctccttg taatgcaatt ttagctttga atttattgtg attaacttct agcacgtcta
      781 attcattata tttgattaat tttaatgcat tactcaagtt cataatttat tcctttgatg
      841 actaaaataa ttgacagcaa acactactta gtaattttat ataaaataag ggaagacatc
      901 ttgccaaact atcagttata agacagaata gccagaattt tttattactt ataaggataa
      961 acttctcatt tatgaagacc aaaacattta ctcgttctta tcttgcttct tttgtaacaa
     1021 tcgtattaag tttacctgct gtagcatctg ttgtacgtaa tgatgtggac tatcaatact
     1081 tccgcgattt tgccgaaaat aaaggaccat tttcagttgg ttcaatgaat attgatatta
     1141 aagacaacaa tggacaactt gtaggcacga tgcttcataa tttaccaatg gttgatttta
     1201 gtgctatggt aagaggtgga tattctactt taattgcacc acaatattta gttagtgttg
     1261 cacataatac tggatataaa aatgttcaat ttggtgctgc aggttataac cctgattcac
     1321 atcactatac ttataaaatt gttgaccgca atgattatga aaaggttcaa ggagggttgc
     1381 acccagacta tcatactcct cgattaaata aattagtaac agaagttgtg cctgccgcag
     1441 tcaccaatgc aggtacatct attaaaccct acttaaatga agaacgcttc cctatgtttc
     1501 ttcgtgctgg ttcagggaca caagcgctaa gaggaaaaga aagtaataaa acaactggaa
     1561 tcgctggtgc ttatgaatat cttactggcg gtaccacatt acaattatct aaaagctccc
     1621 ctgatcactg gttagattat tcaagtaacc tttatcaagt aagctatgga ccactttcaa
     1681 cctatgcact acctggtgat agtggttcag gttcttacgc ctatgatatg aacgaaaaac
     1741 gatgggtatt agttggtgtg ctcaatttct ataatggtat ggataatcaa ttcaaccgct
     1801 ctgcgattat ccgtaaagat ttccacgaga aaaaatttgc cgaagatatt gcaggaacaa
     1861 tcaataatac cgtacaaaat gcacaattca attggactgc tcaaggtaaa tccagctctc
     1921 ttagtcaatc aaataatgtg caaaaactca acgttgatct aaaagatagt agcattgcaa
     1981 accaaaacac ttctctgcca caagaaaatc acggtaaaac cattaatttt aatggtaaag
     2041 atgcaactat tgtactaaaa caggatattg accaaggtgc aggtgcatta aatctgaacg
     2101 ctaatctcac tattcgtcct gaaacagacc aaacttggca aggtgcaggt attatcgtcg
     2161 gtaaagataa aaaagtgaat tggcaagtaa aaaatccaca aggcgatcgt ttatctaaac
     2221 tcggggaagg aacactctat gtaaatggac gtggacagaa tcttggcgat atcagtgtag
     2281 gtgatggtat tgtaatactt aaccagcaag ccgatcacca aggaagaaaa caggccttta
     2341 atacagtagg aatcgtaagt ggtcgcccca ctgttgtgct aggtagtgca gatcaagtta
     2401 atcccgataa tatttacttt ggatttcgcg gaggtcgttt agacctaaac ggtaacagca
     2461 tcgcctttaa acgtattcaa aacagcgata aacatgctcg tattgtaaac cacaatcgcg
     2521 atcacatttc taccttaata atacaaggcc aagatcctct cactagtaat gatcttatat
     2581 ggggaaaatg ggcaagtaat agcccagcag acatttacga atataccaat ccttatcaaa
     2641 ataaacgcaa agattacttc cgtctgaaag gtaattcgag agtatattat ccaacgaatg
     2701 ctacaagtaa cgatcactgg gaatttcttt ccagtaaccg cgagcaagca atacagaaaa
     2761 tcctagatgc caaaaactta agacagcgct atgacacgtt taatggtttt ataggggaag
     2821 atgcttccaa taaaactaat gggatattaa atgtcgtgtt tgatacaaaa acagaagtaa
     2881 atacagaaca agataaatta aagaatatct acacaatgtc gggaggattt aaccttaatg
     2941 gtgaactcac ccttaaaggt ggtacattgt tgctttctgg tcacccaacg ccacacgctt
     3001 atgatattaa gaataagcat gatgttgtgc gtgaaaacga ttggcaagac agccatttta
     3061 ctgctaaaaa tatcacggta aataaaatgg cacaactcta tatcgggaga aatgtcaatg
     3121 aagtaaatag tcactttact gcgactgata aagccaaact caatttagga tttattaatc
     3181 gttcaacgcc aagttgctat gattctgaat acacaggcac tacacattgt gaagtgcaag
     3241 cggtcatttc cgataatatt tttgcaaatc tagcaacaac cgccattaaa ggtaatgtta
     3301 aattacaaaa ccatagccaa ttaaatttag gcaaagcaaa cctcactggt tctgtacaag
     3361 ctgatcaaac aactcatatc actttagcaa atcacagtca ctggttaaac aatggtacga
     3421 gccagattgg gcatcttaca atggaaaaag ggtcgatcct tagcctaaac gataaatttg
     3481 ctaccacgga aatcccagtc cgattcaaca agatgatcat ccaaggtaat ctaaaaggta
     3541 atggacgaat taactatacc gcaaatttag ccaagggcga atctgatcat ctccaagttg
     3601 acggtattgc tgaaggaaat tttgtccttg ccgttagaaa tagcacaact gaagcaaatc
     3661 caaaaagctc attaaaccta ctaagcttaa aaaatagcaa ccaagaaggc aataaagctt
     3721 ctatttctct agaaaataat tatgttgatc taggtactta tcgttatgta ttagaaaatc
     3781 gtaatcacaa ttaccattta tttaatccat taataccaaa ttcaacctct aaagagatga
     3841 atgctacatc tgtatcctct attccaaaaa aggaatctgt tactaatgtt cctactttag
     3901 ataagaaaga aactgaacaa aatcttactc aactacaaaa agatttttca gcacaccaat
     3961 tagaaaatca aaaagcaaaa caatctatga taaatgctca atctgagcta agacgactca
     4021 attcacaact gaatgtattg caaaaatatg tgaattctcg tcgcttaggt tactatactc
     4081 agcaggcagt tttagaacaa attagcatta ttcaaaataa aattaaacaa acacaaacaa
     4141 tatttaatga cgctaatgca actgtaaaac tcacagatca aaagctagaa gaagccaaat
     4201 tagctctagg ctctgtaaac gatcttgtat taataaaagc ctctgctcca gcaatgcaag
     4261 caactaatca agatacgagt atgatgaata ttattcaagc agattggata agccaatacg
     4321 ctaacacagc actttctgaa ctctcggcac aggctaattc tgctctgcaa atcagtaata
     4381 gcttagatcg ccaactcttc aaacaaagcg ataaattcaa cgtatggagc agcgtcgaac
     4441 atcagaaaac cgagcataaa tcagatttat accgcccgta taaacaacaa accaacctga
     4501 cccaactggg catacaaatg ccgatagata acggtttaat gtttggagtt gcattatcta
     4561 aaaaccacgc taacgcggaa tttaacgagg gtgtaaacgg taaatcgaat ctactaatgg
     4621 caagcctata tggtaagtgg caatctcaac aaggcacttt tatcagcctt gatggcagct
     4681 acggtaaagc aaaaaaccaa ctctacctat ttggtgaaaa ccactttacc cgccgaattt
     4741 cctctattgg tgctaacatt ggacatcaat ttgacctcgc aggagttcaa attcagccaa
     4801 caataggagc aagatactac catttcagcg gccaagacta tacactagga ggagcgaaaa
     4861 tcagctcacc aaatacccac tttatgacat atcaagcggg tctaaaagct agtaaaacct
     4921 tttcattgga tgactggaaa gttgaaccaa gcattacaac ccactatgtg gatgcaagta
     4981 acaaacgctt agcagtaaac gtcaataata acaatatcaa ccaacgtttc ggtcgctatc
     5041 tgaaaaccga agctggtatc cgatttgaac ataaccaatg gcaattcgac ttacacgctg
     5101 gtttcattaa cggcaacgaa atcaaaaaac aacattttgc tggtgttaag ctaggatata
     5161 gctggtaaga aaaagcccct agaactattt ctaggggctt tttctactct taaaaagagt
     5221 atctaacttg ccttattttc taaccaattc ttaataaaat ctgctattcc cccaatatta
     5281 ttaatatcca accaattttc tctctcaagc gggtaatccg ttgcggtggc aatcgtccat
     5341 tggtctagct ctggcaatgg tttttcaatc cctttgcggt ggagctgaat ttttggcaag
     5401 gtttcgtgtt taaagccttc tacgaaaacg agatcaacct cttgcgggtt gaattttgca
     5461 attaattgag aaaattcgac cgcttgtttg gtttctgtca ttaatgccca acgttcatcg
     5521 cacacaatca ttgtcgggtt tgctcctgct tcacgtaggc ggtagctgtc tttgcctttt
     5581 ttatctacat caacgttatg gtgggaatgt ttaatcagcc caacccgaat accgcaagcg
     5641 gtcaattttg ggattaattt ttccaataag gtggttttac ctgtgccgct gtagcctgta
     5701 attgcaaggt tttttacagg gaattggctt actcggctta aatcttccaa tgtattcacg
     5761 ttggtgaatg ccgatttttg ttcggaaaaa tcaactgcca cgcttttttg tgattggaag
     5821 aacgcaagca attgctgttg gtttgagcct aaataggctt tcaaatcttc ttgtaccgaa
     5881 cgatgaatca acgcaaaagt gggatgtgga cgctcaccat catgggcata tgcaatttgt
     5941 acgttattta tccgcaaagc agtttttaat ttttgcaata acagctcagg cataaagggc
     6001 gtatcgcaag gcacaaaaag caaatagtca ctttcaattt gctcaaatcc tgccagcatt
     6061 ccactgagtg gaccttgaaa atcaggcaag ctatcttgat agtaagaaaa agcaggataa
     6121 agctgctgat attgctcaat agaacgattg acattaagcc aaatgtcact aacttgtggt
     6181 gaaagtcggg ctaaaatgtg tgaaataagc ggttttcctt caaaaagttg taaccctttt
     6241 tctaccccat tcattcgacg agctaaaccg cccgctaaaa tcacggctga aatgcgttct
     6301 tctattgttt tactcacagc tttatccctt aaaattttgc aaaaataaga gtaaaagtat
     6361 attatttcgt ttaatttcca acaagttttt taaggggtaa aagatgaaat gcgaacgttt
     6421 agaagagtta ttagagttac ttggcgaaca ttggcgtaaa aatcctgact tacacctcat
     6481 tgatattttg cagcagcttt cagttgaagt gggcgagcct gataatttca aagcgttaag
     6541 cgatgaagtg ttaatctatc agcttaaaat gcgaaatgca ggcaaatttg agcctattcc
     6601 cggcataaaa aaagattatg aagatgattt taaaacggct ttattgcgag ctcgtggaat
     6661 tttaaacgat taagattgtc ttatccgtta gctagtttag catttattat ttatcaacat
     6721 ttttgaagga atcattatga aaaaattggc attaaaaacg gcatttgttg cactttctgc
     6781 cctttttaca tttaactcaa cggcaatcgc tgctgatcca accgcaggca aagaatatat
     6841 cgaagtgcgt aaagcacctt ctgcacaaaa agaagtggtg gaatttttct cattctactg
     6901 cccacactgt tatgattttg aattaagcta caaaatccca agccaaatca aagaaaaatt
     6961 accaagcgat agcaaattag tgcaatatca cgttaatttc ttaggtcgcc aatctgaaga
     7021 tttaactcgt gcttgggcat tagcaatggc attaggtgcg gaagataaag taaaaaccgc
     7081 attatttgaa ggtgctcaaa aagacgcatt caaatcaatg gacgatattc gctctgtatt
     7141 cttagcaaac ggcattacag ctgaacagtt tgatagcggt attaatagct ttgcggtaaa
     7201 tggcttagtg aataaacaag ttcaattagc ggaagacttc caaattcgtg gtgtgcctgc
     7261 attcttcgta aatggtcaat accaactcaa cttagaaggc tttgcagatt cttcatcaac
     7321 gaatgatttc atcaaacgtt atgttgatgc ggttgtgttc ttaagcaaga aataacccct
     7381 taaaatagtt agggttttta caatgctgag taggtaaatc ctattcagca ttttttatat
     7441 gcaaactcgg agaacaaaat gacaaagtta tctatcctaa accttgtacc tattcgtgaa
     7501 gggcaaactg ccaaacaagc ggtcgattct atggtgaaat tagcaaaaca cgcggaaagt
     7561 atcggcattg aacgctattg gattgcagag caccacaata tgaaaaacct tgccagctcg
     7621 gcaacacagc tcctcattca gcatgccctt tctcacactg aaaaattaag agtgggatca
     7681 ggtggcgtga tgttgcctaa ccatagtcct tatattgtgg cagagcaata cggtacgctt
     7741 gaaacactct accctaaccg tgtagaactt gggcttgggc gagcaccagg caccgatatg
     7801 cgaaccgcta ccgctttacg ccgtaatgca caaagtctgc catttcctga tgaaatcagc
     7861 gaactaaaag gttattttga aggcacaaat tctgtgtctg cctaccctgc acaggggttg
     7921 aatgtgccgt tttatatttt aggctcaagc cctgaaagtg cctatttagc agcagaacgt
     7981 ggcttgcctt atgcctttgc ttcacatttc gctcctcgtt ttatggacga tgcggtgcga
     8041 atttatcgca cacactttaa gccgtctgaa gtgttagata aaccctatgt gattttaggt
     8101 gtgaatgcga ttgcggcaga aaccgaccaa gaggcagaac agcttgctac cactcagact
     8161 cagtttttct taaatgttgt taccaatgcc caaaactatt tacaaccgcc cgtcgaatcc
     8221 gatgataaag tgtgaaaaaa ttttgtgaaa gcggaaatcg taccgcattt cgggcctgtt
     8281 tcgttccaac aaaatgcgtt atacaaccaa gagaaacccg ttgttcgcca aatgactgct
     8341 tgttcactta tcggtagccg agagagcatt gaacaacagc tcaagtcatt aaaagcacgc
     8401 attgaaattg atgaaattat ggcggtaagc tacattttcg atgagcaaaa acagcatcaa
     8461 tcctatactt ggttaaaaga gattgcagat aaggtgtgat atgagcaaaa caatgcaaca
     8521 aaaagccgct gatgcacata atatgtgtaa gctaaaaggc gactctatgt tagataactc
     8581 agaccgccaa attgcctttg aagcagtgta tgatagtgaa gaaatagctg tacaagcggt
     8641 cgaatttttc acacaaaaag caaaatcggt agaaaccgag ccttgcgaca ttcaaagtga
     8701 aatcacaccc attatagatg gctttctgat gaaaatgtgg ataactttca gttgccaagc
     8761 agaagtaatc ttatttcaaa tggcggtgag atagatataa a
//
LOCUS       DANLXK010000100         8756 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.101, whole genome shotgun sequence.
ACCESSION   DANLXK010000100 DANLXK010000000
VERSION     DANLXK010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8756
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(78..1361)
                     /locus_tag="PXD88_001985"
     CDS             complement(78..1361)
                     /locus_tag="PXD88_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6281529.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            1527..5243
                     /gene="metH"
                     /locus_tag="PXD88_001986"
     CDS             1527..5243
                     /gene="metH"
                     /locus_tag="PXD88_001986"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL6281530.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
     gene            5351..7354
                     /locus_tag="PXD88_001987"
     CDS             5351..7354
                     /locus_tag="PXD88_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL6281531.1"
                     /translation="MIEKQNYHLVQLLKDSNYQSTQFSPAYIKKLEESIFLKSGKNGD
                     IPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFERMELEYSVVFGREKKRADIV
                     IFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPIGVWTNGESISYYNRRDPNY
                     FKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKSLKDLVIEMEDEVLANAGVD
                     VFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESELKAKIQSLFDRAKNKWEGVF
                     AESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYV
                     IDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPE
                     QTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWND
                     VYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQS
                     KVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYIRDFIAERCRILAVVGLHGN
                     VFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKSSKDNSGDKIYVKNADGTLK
                     LDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSFVGKD"
     gene            7453..>8756
                     /locus_tag="PXD88_001988"
     CDS             7453..>8756
                     /locus_tag="PXD88_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6281532.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSSTFPKANITQAMSFVRLKSKYNKELLPTYLFAFLQSSYGKIQINRNARPTGQYNL
                     NNEELGAIKVPLIDLETQKQVDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQAD
                     SNPVNVKSLKESFLQTGRLDAEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTK
                     PMYQYIEIGDVNIGDGSYQTNWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGE
                     NDQDLVVSGAFTVLRRKENSVFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDIL
                     NLPIPKISGEIQEKIAEYIRQSNDLRQQAQNLLAQAKNNVEF"
BASE COUNT         2792 a         1750 c         1948 g         2266 t
ORIGIN      
        1 accgactaaa ttactaggta attcaatcgg ttataagtgg tcggatattt aataaaaaat
       61 cttattttta tgaatagcta ttcagcttgt ccccaaggag caaccttaaa caacattagc
      121 attcccggaa taccaataaa gaaacagagc cagaagaatt ggtaatagcc catcatttcc
      181 actaaatgcc ctgtgtatgc ccctaacatt ttgcttggta gggcagcaag gctggtgaaa
      241 atggcgagct gcattgcagt gtaagcggga ttagtttcac gagccataaa ggcaacgaaa
      301 gccgctgtgc ctaaacccac gcccagatat tcacctgcca tcactaagcc taatttccaa
      361 agctcggcag ctccaatgct ttcggtaggg aaatgctcaa aactggcaag gtaagcgaag
      421 cctaaaatag taattaattg tacaaatccg aacagccata aggctcggtt aacgcccaat
      481 ttcaacattg ccacgccacc aataataccg ccgccaatgc tgcaccaaag tgaagttatt
      541 ttcacaatgc cggcaatgtg cgatttagta aaacccatat ccaaaataaa tttggtttgt
      601 agcgtagttg caagggaatc gcctaattta tataggaaaa taaatagaat cagcccaatc
      661 gctcctgcca cgcctttacg ggtgaaaaac tctttgaacg gatcgacaaa cgccatataa
      721 aacggcttag aacggtcgat tggcttatga ttcggctcgg cagcgattat tagcgtaacg
      781 aataagcaag gcactaaaaa agcagcggta atcagaaata cggtatccca cgcatagtga
      841 tcggctaaaa ataatgaaag cccacccgga atcagccctg caatacgata agcattaacg
      901 tggatagagt tacctaaccc gagttcgtta tccgataaaa tttcacgccg aaaggcatcc
      961 accacaatgt cttgcgtggc ggaaagaaaa gctaatagca cagaaagagt aacaataatt
     1021 gaaatatctt gcactgggtt gaacaagcca aagctggcta aaatcaccaa tagcccgatt
     1081 tgtgaaatga aaatccagct tttgcgtctg cctaaaaaag gtggaaagta gcgatctaac
     1141 aatgcagccc acaggaattt ccacgtgtag ggcaaagagg tcagggtgaa ggcggcaata
     1201 gttttaatat ctaaattggc actggttagc caagccggca ttagctgaat taacacaaac
     1261 aacggtaaac cggaacaaaa gccggtgtaa acacaaagca acatattttt agtaaaaatc
     1321 tgttgccaga tagagcgttt gggttcgtga caagcggtca tatttttcct acattttgca
     1381 aaataaaaag gggaagaact gagccaatat agcataattt taaaggcgac tctaaccctt
     1441 tccatttcgt cacagataag gtttgacagc cttgcgacat atttctatta ttccttttaa
     1501 tcaaactaaa aaactggaag cagagtatga acacgcagca tagaaccgaa ttacttcaaa
     1561 atgcccttac cgaacgcatt cttatcttag acggtgcgat gggaacgatg atccaaaaat
     1621 ataaactaac cgaatctgat ttccgaggtg aacgttttaa aaacagtacc atcgatctta
     1681 aaggcaataa cgacctactc acactcaccc agccactcct gatttctgct attcacgaga
     1741 aatatttagc cgccggtgcg gatattatcg aaactaatac ctttagtgcg acgaccattg
     1801 ctcaagcaga ttatgaactt gaaagtattg cttatgagct gaatcttgtg ggggcaaaac
     1861 ttgcccgtct tgccgccgat aaattctcca tccctgaaaa acctcgtttt gttgccggta
     1921 ttcttgggcc gactaaccgt acttgttcga tttcccctga tgttaatgac cccggtttcc
     1981 gtaacattac ctttatgcaa ctggtggaag cctatgccga ggcaacccgt ggtttgattg
     2041 aaggtggggc ggatctgatt atgatcgaaa ccattttcga taccctgaat gccaaagcgg
     2101 cggtgtttgc aattgaaacg gtgtttgatg aactgggcgt gaaattgccg ataatgatct
     2161 ccggcaccat taccgatgcc tcagggcgaa cgctgtcagg gcagaccacg gaggcgtttt
     2221 ataactcgct ccgccacgcc aaaccgctga cgttcggctt gaactgtgcg ctcgggccga
     2281 aggaactccg cccttatgta gagatgatgt cgaaaatcag tgagactttt gtttcggttc
     2341 acccgaatgc cggcttgcca aacgcttttg gcgggtacga tttaggggcg gaagagatgg
     2401 cgacttacat caaagagtgg gcagaactcg gctggctgaa tattgtcggc ggctgttgtg
     2461 gcaccacgcc ggagcatatc caagcctttg ccgaagcaac caaaggcgtt gcgcctcgta
     2521 aattacctga aattccaacc gctatgcgtt tgtcgggctt agaaccgctg acgattgacg
     2581 ataattcgct gtttgtgaat gtgggcgaac gcaataacgt caccggttcg gcaaaattta
     2641 agaagctgat taaagaagaa aaatttgcgg aagcgattga aattgccatc agccaagtgg
     2701 aaaacggggc gcaggtgatt gacgtgaata tggacgaggc gttgctcgat tccaaaaaat
     2761 gtatgacccg tttcctcaac attcttgcta ccgaacctga ggcggcaaaa gtgccgatta
     2821 tgattgactc ctcgaaatgg gaggtgatcg aggcgggctt gcaaacggtg cagggcaagc
     2881 cgatagtgaa ctccatttca ctcaaagagg gcgaagagaa atttattcac caagccaaac
     2941 tctgccgccg ctatggggct gcggtggtgg tgatggcatt tgacgaagtc gggcaagcgg
     3001 ataccgaaga acgcaaggta gaaatttgta cccgagctta tcggattttg gttgatcagc
     3061 tcggcttccc accggaagac attattttcg acccgaacat ttttgcgatt gccaccggta
     3121 ttgaagaaca caataactac ggcgtggatt ttatccaagc ctgtgagcgg attaaacgag
     3181 acttgccaca cgccaaaatt tccggcgggg tgtcgaatgt ctctttctct ttccgaggca
     3241 acaatgtggt gcgtgaggct attcacgccg tgttcctcta ctatgcgatc aaagccggaa
     3301 tggatatggg gatcgtgaac gcagggcagt tggcgattta tgacgacctc gaccctgaac
     3361 tgcgagaggc gattgaagat gcggtgctga accaccgtca tgacactacc gaccgcctgt
     3421 tggaaatttc cgaaaaatat cggggcgtaa aagtagaaag tgccgatgaa agtgccgccg
     3481 agtggcgaaa tttacctgtg gcagagcgtt taaaacacgc cctcgtaaaa ggcataacga
     3541 cctacattat tgaagatacc gaagaggctc gccagcaatt tgcctctccg ctggaagtga
     3601 ttgaagggcc gctcatggcg ggtatggacg tggtgggcga cctgttcgga gacggcaaaa
     3661 tgttcctgcc gcaagtggtg aaatcggctc gggtaatgaa acagtccgtt gcctatttag
     3721 agccgtacat caacgccacc aagcagaaag gatcgagcaa cggcaaaatg gtgatcgcca
     3781 ccgtgaaagg tgatgtacac gacatcggca aaaacatcgt tagcgtggtg ttgcagtgca
     3841 ataactttga agtgatagac ttaggcgtga tggtgcctgc cgatgtaatt atcgaaactg
     3901 ctattcggga gaaagccgat ctcattgggt taagcggact aattacccca tcgctggacg
     3961 aaatggagta ttttttaggt gaaatgaacc gcttgaagct cgatattccg gtgctgattg
     4021 gcggcgcaac gacctcaaaa gagcatacgg cgatcaaact ttatccgaaa tataactacc
     4081 ccgtagtcta taccgccaac gcttcacgtt gcgtaaccgt ctgtgcgacc ttgatgaacc
     4141 ctgaggcaaa agccgaattt tgggaaaaaa ccaaagccga atacgaagaa attcagcgta
     4201 aatttgccgt tcgcaaacca cttcgcaacg gtttatctat tgaggaggct cgagccaatc
     4261 gttttgacgg atttagtggc gaatgggcag actatgtgcc gccaacgcca aaacagaccg
     4321 gcattatcga gtacaaaaat gtaccgattg ccaccctacg caaatttatc gactggtcgc
     4381 cgttctttat gctctggggc ttaatgggcg gttatcctga tgcctttgat tatccggaag
     4441 gcggcgaaga ggcacgccgt gtctataacg atgcccaacg ggtgctggac gaatttgagc
     4501 aaaacggcaa gctcaaccca agtgggatta tgggcatttt ccctgccgtg cgtgagggcg
     4561 atgatattgc aattttaaac gaagatcgca ccgcttgtat cggcaaatcc taccacctcc
     4621 gccaacaatc cgaacgaggc aaaaacagca aaagcccgta caacctctgt ttaagcgatt
     4681 ttatcgccga ccgagaaagc ggacaacaag actggttcgg aatgttcgcc gtttgtgccg
     4741 gcattgaaga acactattta gttgaaagct acaaagcggc aggcgatgac tacaacgcca
     4801 ttttgctcca agccgttggc gaccgcttgg cagaagcaat ggcggaatac ctacactttg
     4861 agctacgtac caaagtctgg ggctacaccg tggaagacga agacaacgga cgcttaatcc
     4921 gtgaagaata catcggcatc cgccctgcgc ccggctaccc aagctgcccg gaacacaccg
     4981 agaaacagat aatttgggac ttgttagagg tggaacaacg catcggcatg aaactcaccg
     5041 aaagctatgc catgtggccg gcagcaagtg tctgcggctg gtacttcacc caccctacca
     5101 gcaactactt cactctcggc aagattgatg aagatcaggt gttggattac gccaaacgca
     5161 aaggctggga cgaactcacg gcgaagaaat ggttaagtgt ggcgatgaaa caagatgtca
     5221 agtcgcaggc tgaaaacatt taatgtagtg gcgggtttta acccgcctgt tacaagcggt
     5281 tggttttgag ataaaatatg caaaatttat ctctctttta tgcaaagaag ttatcatcga
     5341 gaacaaaaca atgattgaaa aacaaaatta tcacttagta caacttttaa aagacagtaa
     5401 ttatcaatca actcaatttt ctcctgcgta tataaaaaaa ttagaggaat ctattttcct
     5461 caaatcaggg aaaaatggag atattcctca tattcaatgt cttgttcgta aaaaggatat
     5521 taagctcaca cctgaagaag cagtacgcca actctattta atgaatttgc attatgaata
     5581 tgattatcca tttgaacgaa tggaattaga atattctgtt gtattcgggc gtgagaagaa
     5641 acgagcggat attgtcatct ttgatagaga taatcctaac gctgtctata ttatggtgga
     5701 gctgaaaaag ccgaaattaa aagatggtaa agaacaatta aaatcttatt gtaatgcgac
     5761 tggagcacct attggtgtat ggacaaatgg cgaaagtatt tcttactata atcgccgtga
     5821 tcctaattat tttaaagata ttcccgatat tccgaatgct caacaaaaac tttctgattt
     5881 attacaagaa cgttggacta ttcaagatct gatagataat gacaaaattg ccaaacaacg
     5941 taaatcattg aaagatcttg ttattgaaat ggaagatgag gtactggcga atgctggagt
     6001 tgatgttttt gaagagttat ttcaacttat ttttactaaa ctctatgatg aaatggaaag
     6061 tacacgcaat aaaagtcgtt atttagagtt tcgtaactat ggtgataccg aaagtgaatt
     6121 aaaggcaaaa attcaatctc tatttgatcg tgcaaaaaat aaatgggaag gcgtatttgc
     6181 tgaaagtgcc aaaatcaacc tttccccttc gcatttggcg atttgtgtat cttcattgga
     6241 agaagtaaag ctgtttaatt ctaaccttga tgtagtggat gaagcatttg agtacttaat
     6301 taataaatcc agtaaaggag agaaaggaca atactttacg cctcgttacg tcattgatat
     6361 gtgcgtaaaa atgctcgatc caaaacctga agaaacagtc attgataccg cagcaggaag
     6421 ctgtggtttt ccagttcatt ctatttttca cgtttgggaa aaacaactta aagcgagagg
     6481 attagaacgc tcacacttat ttactgctga agaaaaattg cctgaacaaa cagattatgt
     6541 gaaagaaaaa gtctttgcga ttgatttcga tgaaaaggca gtacgtgttg ctcgtaccct
     6601 aaacttaatc gcaggagatg ggcaaaccaa cgtactacat ttaaatacct tagattatga
     6661 acgttgggaa gattttacta aggaagaaga atggaatgat gtatatggag aaggctggaa
     6721 aaaattaaga aaattacgta aaactaaaaa tgaaaatcga gatttccaat ttgatgtgct
     6781 aatggcaaat ccgccttttg ccggtgatat taaagaaact cgtatattag ctcgctatga
     6841 attaggcaaa aatagcaaag gaaaacagca atccaaagtc ggacgagata ttttatttat
     6901 tgaacgcaat ttagatttct taaaagacgg tggacgaatg gcgattgtgc taccacaagg
     6961 gcgttttaac aattccagcg ataaatatat tcgtgatttt attgcagagc gttgccgcat
     7021 tttagctgtt gtgggcttac acggaaatgt gtttaaacca cataccggca caaaaacttc
     7081 cgtactattt gtgcaaaaat ggcacgatga actttgcccg aaagtagagg attacccgat
     7141 tttctttgcc acaatgcaga aatccagcaa agataattca ggcgataaaa tctatgttaa
     7201 aaacgctgat ggcacactca aattagacaa ccatcaacac ctaattgtgg agcacgatct
     7261 atttaatcac gataatagta cccaagacgg cattgcagaa gcctttattg aatttgctaa
     7321 aaaagaaaag ctctcttttg tgggaaagga ttaagcccat ttgaccctgc taaatatcag
     7381 gcattgttag atgggctaga ggtgagcgag gtttatttga gtaaggttcg ttctgcaagt
     7441 tattcggaac gaatggatag tactttcttt ttgaaaaaat acttaaacca tccgagtttt
     7501 aattttccat tatcgctgaa tgaggtttct ctgattaaaa gtggtacaac accaacagat
     7561 cgagatgata acttaaaaga gggggttgtc ttattaaaaa ccaatgatat taggaataat
     7621 ctattaaata agtactcttc ggtagattat tttattagcg aagatatcaa tgagaaaatg
     7681 atttcatcac aactgaaaga aggggatgtt ttagtaaata tcgttggtgc aactttggag
     7741 gttgttggtc gggtagctta tgttagtagc acttttccaa aagcaaatat tacacaagca
     7801 atgtcttttg taagattaaa atcaaaatat aataaagaat tattaccaac gtatttattt
     7861 gcttttttac aaagttctta tggaaaaatc caaattaacc ggaatgcacg cccaacagga
     7921 caatacaatc tgaataatga ggagcttggt gcgattaaag tccccttaat tgatctagaa
     7981 acacaaaagc aggtagataa aatcattaag caaagtaatg attttgtaca aaaatcaaca
     8041 caaagttacc aagaagctga aactttatta ttagaaaatc tcggtttgag agcttttcaa
     8101 gctgatagca atcctgtaaa tgttaaatcc ttaaaagaga gtttcttaca aacaggacga
     8161 ttagatgcag agtattatca aactaaatat gagcaatact ggaatttaat tcaatcgcaa
     8221 gattatgttt ttattcgtga tgaatattta catatcaccc aaaaacctga ttggacaaaa
     8281 ccgatgtatc aatatattga aattggtgat gttaatattg gtgatggttc atatcaaacg
     8341 aattggatag agacacaaga attacctgct aatgctaaaa ctcaagccca aacaggtgat
     8401 attttaattt caaccgttcg cccttatcgt ggtgcagtaa caattatcgg tgaaaatgat
     8461 caagatttag ttgttagtgg tgcgtttaca gtattacgca gaaaggaaaa ctctgttttt
     8521 aataatgaag ttttaaaggt gctattacgg tcagaactat ataaagattg gttactacaa
     8581 tttaatgtag gtacgagtta tcctgtaatt aaagataacg atattttgaa tttaccaatt
     8641 cctaaaataa gtggagaaat ccaagaaaaa attgctgaat atatccgcca aagcaacgat
     8701 ttaaggcagc aagcacaaaa tttactcgct caagctaaaa ataatgtaga gtttga
//
LOCUS       DANLXK010000101         8485 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.102, whole genome shotgun sequence.
ACCESSION   DANLXK010000101 DANLXK010000000
VERSION     DANLXK010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8485
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(75..539)
                     /locus_tag="PXD88_001989"
     CDS             complement(75..539)
                     /locus_tag="PXD88_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL6281533.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCGGIARN
                     NPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIK
                     DRGKYSRFFGILHHLALINRFTLNDCLAHAYDQIKDRKGEMQAGIWVKEDDL"
     gene            complement(523..726)
                     /locus_tag="PXD88_001990"
     CDS             complement(523..726)
                     /locus_tag="PXD88_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281534.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            complement(723..1250)
                     /locus_tag="PXD88_001991"
     CDS             complement(723..1250)
                     /locus_tag="PXD88_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL6281535.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     VTHWQPLPEPPKEEK"
     gene            complement(1328..1780)
                     /locus_tag="PXD88_001992"
     CDS             complement(1328..1780)
                     /locus_tag="PXD88_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL6281536.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPAVTLTLPCPLKEPQENM
                     WFIDNDFTIVKSMFANAPFVKKFLPQGRCFASEEDAQEWLDAMRNSRR"
     gene            complement(1801..1977)
                     /locus_tag="PXD88_001993"
     CDS             complement(1801..1977)
                     /locus_tag="PXD88_001993"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281537.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
     gene            complement(1990..2625)
                     /locus_tag="PXD88_001994"
     CDS             complement(1990..2625)
                     /locus_tag="PXD88_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL6281538.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            complement(2622..3416)
                     /gene="bet"
                     /locus_tag="PXD88_001995"
     CDS             complement(2622..3416)
                     /gene="bet"
                     /locus_tag="PXD88_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL6281539.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            complement(3457..4407)
                     /locus_tag="PXD88_001996"
     CDS             complement(3457..4407)
                     /locus_tag="PXD88_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281540.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            complement(4420..4632)
                     /locus_tag="PXD88_001997"
     CDS             complement(4420..4632)
                     /locus_tag="PXD88_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281541.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            complement(4766..5245)
                     /locus_tag="PXD88_001998"
     CDS             complement(4766..5245)
                     /locus_tag="PXD88_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281542.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            complement(5242..5601)
                     /locus_tag="PXD88_001999"
     CDS             complement(5242..5601)
                     /locus_tag="PXD88_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281543.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            complement(5605..6111)
                     /locus_tag="PXD88_002000"
     CDS             complement(5605..6111)
                     /locus_tag="PXD88_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281544.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            complement(6298..6373)
                     /locus_tag="PXD88_002001"
     tRNA            complement(6298..6373)
                     /locus_tag="PXD88_002001"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6338..6340),aa:Arg,seq:tct)
     gene            complement(6680..6916)
                     /locus_tag="PXD88_002002"
     CDS             complement(6680..6916)
                     /locus_tag="PXD88_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281545.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            complement(7298..7528)
                     /locus_tag="PXD88_002003"
     CDS             complement(7298..7528)
                     /locus_tag="PXD88_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281546.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
     gene            7820..8095
                     /locus_tag="PXD88_002004"
     CDS             7820..8095
                     /locus_tag="PXD88_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6281547.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
     gene            8104..8409
                     /locus_tag="PXD88_002005"
     CDS             8104..8409
                     /locus_tag="PXD88_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL6281548.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
BASE COUNT         2138 a         1705 c         1691 g         2951 t
ORIGIN      
        1 aagaagaaac cgaaactctt atagagtggc ggaatgcttt tctgcaagat gtttcggttt
       61 ttatagctta ggtactataa atcgtcttct ttaacccaaa tcccagcttg catttcgccc
      121 ttgcgatctt tgatttggtc gtaggcgtga gcgaggcagt cattaagcgt aaatctattt
      181 attaaggcta aatggtgtaa tatgccaaaa aaacggctat atttacctct gtctttaatg
      241 cgttcaatat catatagaca atgaacagcg accgaaatat caaatctgta accatttaat
      301 ctatgatttt caaattgtac agggtaaata ggttgttttt cttgttttgc tttaataata
      361 cagacaacaa tcaaatcccc aatcgcatct ttaatcattt caggattatt gcgggcaatg
      421 cctccgcaga gttcgccaaa ctcttccatc agtttgagca tttgcttttg tggggttgag
      481 ccgttaatta aattgcggtc ttccgcccat tgttcgatgt ttttaattag ttgttgcatt
      541 gtttagtcct ctcatttctt tcattgcttc atcaatcgcc gtgcgtaaat cggcatttct
      601 tgcccaatga aaatactgct cgtgcggttt ggtatagcta gcaataataa attcgtccac
      661 caaatcagaa tatcggacat ctaatttgcg ttgggcgata aagtctaagc gttcggtgtc
      721 ggtcattttt cctcctttgg tggttcggga agtggttgcc agtgggttac tgcaatcaca
      781 tcgtcatcaa gcccatattg atttacacta agaaaatacc actcgttatc ggcaagttct
      841 cttgaaacta ttaaaattaa ctgcattcct gaaatatcgc ataaccctag cacatccgtt
      901 tcaataggtg gtaatttgtc ctcaatggaa atccagccgt tgttttctaa aagtgttggt
      961 ggttcaataa cttgttcagc ttccccaaat aactccgatg ctctttcttc gtctgttagt
     1021 ggacgaatat ctgattttgc tctacctaaa acaacaccat aaactgcata gggtaaatca
     1081 taggcttcat agctttcata gctttcgtga tcatccatgt cacccgcaaa ctcataggct
     1141 tcagtagcac catttaaaca gctttgtttt gcttgctcta atgtttcgtg caaccttatt
     1201 acatgtgtct catccgagac atcgaccgaa aaatattttt cttcattcat tttctttctc
     1261 cgcgttccgt gtttatgtgg atatacaaga aattcaacag cagcattcag ctgttagtgc
     1321 tgccgattta cctacgacta tttcgcattg catctaacca ttcttgagcg tcttcttctg
     1381 aagcgaaaca tcgcccttgt ggcaagaatt tttttacaaa gggggcattt gcgaacatag
     1441 attttactat ggtaaaatca ttgtcaataa accacatatt ttcttgaggt tcttttaatg
     1501 ggcaaggtaa cgtcaatgtt actgctggtc ttggttcttc ccacatacca acaatatcat
     1561 attgagctat tgttccatca ttgaaatgag atccgctaac agcccacgat acttctgaca
     1621 aaaatacatt ttcttcatca actgtatacc cttgtacttg gtggtcttta ttatctctaa
     1681 tatagtcatc actaattagg tattttacaa atgccttatc attatttctt agttttactg
     1741 gctcacctgc caatgcttta tttaaatcaa atggtttcat tttattctcc gtgtttgtgg
     1801 ttatgttgat gtacaggcaa ttccaccata gcattcagcg gctgtggcgt gagtggctct
     1861 tgcggaatat tcagccgtcc gcctaaagtg gcatatggct ttgatgcggt agagtgttct
     1921 gccgttgtgg ttgattgtgt cgttttggag tagttcgtat ttcttttggg ttgtcatatt
     1981 ggctacctat taaaaagccc ctttcggggc ggttaccccc ttcaatgcat aaagggattt
     2041 gataaattgc gggatatatt gatcaaaggc tttcatcaat accggatcac gttcggctgt
     2101 gtagatgtaa agcggttgtt tttggtattc ggggcagtag ctgacaaagt cccacgtttc
     2161 gtagcctgtt acccaaaggg cagattgcac ttgaataaga tattcattcg gcacaccgcc
     2221 ttctagcagg tatttgatgt gggttttcat tttcgggcat ttgatttcca accctttttt
     2281 tagattggga attaagccgt caggacttac cattaactgt ttttcggcgt taaggtacac
     2341 accgccgact tgcacgactt cggtgtcggt ttcaaactcg taagccattc gtgcaagcgg
     2401 ttcaagctcg ttgcctcgtg ccatatcaga cgacttaaaa ccgtcttttg ctccctcaat
     2461 gctttcggca accagttcgg caagatagct attccaagcg gacgattttt taccgcttgg
     2521 cgtaacgata ttttcaatgc ctgtggcggt gggaatgccc aatctggcat tgagccattc
     2581 ttctgatcct tgttcgcaat ctaaaatgat taaatcgcct gtcatagtgg gatttcctca
     2641 ccgacacttt cgccattatc cgccttttca gcgttttgct tgtctagcgt aagattgagc
     2701 tttttaatca ctgcctctgc ctgcgattta gggatttggt tcagtgcttg aacgccaata
     2761 taggcgagaa ttttcgcctc ctccgtaccg gttacttgca ttaactgccg gatttgcgac
     2821 agttgttctt ccgaaatgag ttcaacggca gtggtttcta ccacgttatt ttgtggtgtg
     2881 atgtttttag gtggtttttc attttccgca atacgctctg cttcgtcttg gtcgtaaata
     2941 cccgtaaagc caaaggctaa tcttgcacat tggatcattg ctttatggcg taacattctt
     3001 tttgggtgag agttccaagc tggagagctc tttttacatt cccccataaa ttccgtcacc
     3061 acaatcggtt tacttctatc tttacggtag atagtacaag tacaggcgga atagtcatcg
     3121 gtaaaatgaa attccattcc atcatattga ggctcacggt taataatgcg aacccaacca
     3181 tcaacgccga caataggcgt taatccaccg ttcccaccgg ggaatgcata aatttctttt
     3241 gtccaagggt ttaattggta ttggttagca ataaccaata gtgcaatcat ttgagcatcg
     3301 cttacggttg cccctgcgaa agcagacgat ttaagtgtct caactaatcc tgagccatct
     3361 cccatttcaa aacgctcggc aagtttgttg gttagtgttt gtaatgcagt tgtcataata
     3421 tgatccttat ttaggttgaa tttgtgcggt atcaaatcat ttagccttat tgagcgaaac
     3481 gctatcccca aatttcgctt tcagctcacg agcaatactg actgcgttgg tttggattgt
     3541 ttggtttaag cgaatagtaa tgataaaatc gcctaatggc ccatcggttt gtgccggttc
     3601 ttcgatgttc atttttgcca cattttgcgg attttcgacc gcttgtttgc gctccatttt
     3661 atcagtaatc gctttggctt cggcttgtac tttgtcggct tctgctttgg ctttaatcgc
     3721 cgcctcacgc tcggcttctt cggcaaggcg ttgttgaata attggggcga ggtcgtcttg
     3781 ggttgcgatc aatttcactg catcaggaaa aagataagct gattttgcag caagctgttc
     3841 taatcgctca gtcaagcgcc cgatttctac cgacatttcg ctgataatca gcgctttttc
     3901 ggcgttcacg gctttggtta agctgtcaat cgtgcgttta tttttctgtg cctcggcaat
     3961 acgattagca atgccgtgtt ttggcattgt gatttctaag gcaagggaaa tatcacttac
     4021 tttaaccagc ttgtttctgg tatcagtgat ttcttcaatg gctttatcgg caatctgttt
     4081 tttgatttcc gtttctttgc tcttaacgag cttgtctcgg gttaatcgct cttggcggaa
     4141 acgttcagcg atttgttctg ctgttaatac caattccgca atctcgccag tttgcgtttg
     4201 tttaattgcg tcacgaattt ttttctcaat gctttcaagc tccttcactt cttcttttgc
     4261 ttttgcaaaa tcatcatcgg tttcaaaggt ggtggtgagc gtggcaaggt attgatttgc
     4321 ttgctcttca aaagtttgca agttggtaga aaccactcgg ctttcggttt ttaaaataag
     4381 ttcaaattgt tgatttgcag ttgtcatttt cttattcctc taaaattcat ttctgtgttt
     4441 gttctgttcg gctaggtagg cgttgattgc gttacgccag ccatcagaac cggctaggat
     4501 ggtggcaatg gtttcaaagc cgttgttttc taatagctcg atgatgtttt cttcagccaa
     4561 gatgaaagcc tcttcgctag ggtcttcttc tggttgaagt gaagcatctg tgtagtcttc
     4621 gtatcctatc atcacacttt ctccgttact ttaaattcgc aagtttcagg cttgcaggtg
     4681 ctttcaggga taagctcttc attgcattag gagggtgatg gcaaccataa aaagcagggc
     4741 gtataagccg tatttaatcc attgtctaag catgtttagc attgtttgcc tcttgtgtac
     4801 gttttaccat ttcggcaaga acgttgaaga aatcagtttc aagggtaatt gtttcggcac
     4861 ttgctcgtct gtctagatgt aagcgaatat taccgttgct atccacaaag tagccgttta
     4921 gcccataagg tatgaatggc ttgcgttttg gttttgatgg tttaggctta acctgttcag
     4981 gatcttcctc aatttgttca aaattgtaat tgtacataat aggctgatga ccccggattt
     5041 caggataatt aggcaaatta acggctttgg ttttattcag agcttcaatg cgcttattta
     5101 ctgccttaat agcgttaatt tcagacatca tctctgccgt gctgatttct tttatgccgt
     5161 ttaatataac ttctccgaag tagcgttttg tatgattatt ttttaataag cggatagtat
     5221 agctttctac tttattgcgt ttcatttcag caactccttg atttggctaa tacgatactc
     5281 aatcacctca agtattccgt cttgcttctg tttgcgttgc tcaaggtttg ataattcttc
     5341 tcttaatgct tggcggttga tttggtgttg cataaatgca ggtgaatcaa tttgtttcca
     5401 ttgttctaca aaggattttg cctgttcagg gcacttgaag cgtttgcgta tccttgaaat
     5461 ctgcacccac acatcattga ttttttgctt tatgcggata tccgctctcc agcaatcgtg
     5521 gcgtttatgc ttaatgttgt ggcgaaagcc tttcgtggag ctgtcgtgcc atacactggt
     5581 ataaatacta aacgtcgtca ttttttactc cttgtgaata ctaaattcat tcaaacaatg
     5641 cttatttttc aagaattcat ctaagcactc atcaagagtt agctcgtatt ctttaagaat
     5701 gccatttagt tcaatcagaa tcccagagca tttgttaaat aaattaatcc tgattgtatt
     5761 ttggttttgt tctttttcat tgctgtccac taaccaagga gcaaaccaag caaattgcga
     5821 ggtatgatgt aacatacgta tcgctctttg ctcgggtggg gttgttccac tagctttcca
     5881 cgtgtgaagc tctaagtctt catcgaactg gatttgatgg ttaatgatcg ttagtagtgt
     5941 aaaaatctct ccagcagcaa gtttaatatg ttgttctgca ttattagcta ccccgtagca
     6001 cagtttccct actgatgtag cgagatacag acaatgtttt tgagtaagct caatatgggt
     6061 caaaccctgt tgttttgctc gctcaataat aattttgtat ttagttttca ttttgaatcc
     6121 ttttatgtgg ataaaaaaag ccccgcacga ggcggggaaa cggagtcatt atgtttatta
     6181 tcaaccgctc tttttaagtt gtagcagtta cacaacttag ccattcaaaa ccgctctaca
     6241 cggtaggttt ccacttcgta ggctcgtcat cgatgatgtg cgtaaagcgg ttttggatgg
     6301 cgaccgcaga gagattcgaa ctctcgaccc actgcttaga aggcagctgc tctatccact
     6361 gaactatgcg gtcaaagtac cgttgcttaa ccccaacggc agggcttact tcaatctaag
     6421 gaatgtgatg gactaaccat ctctaacaac tctctagtac attcgtttcg ctgcctaacg
     6481 ccgactttag aaaacattaa aactaaaacg gggttatttg tctcactctc tgttgagagc
     6541 tgttagagat ggtggctctt ttttatactt gtgagccacc gggccaagtc ctcttgtttg
     6601 ccacaacttc gaggaatata atacttgggc aacatctagg gctaatgccg aaaaaatgaa
     6661 atcactttgg tgttattgat tagttatttt ttcggtattt atcaccattt ttcgtatcta
     6721 aaagctcttc tgtaatacag ccatcactaa atttattgat ggctgatatt gcttggcaaa
     6781 ccgctatttc cagccccaca taatatggcg ttatagagac ggattttaat attgcctgcc
     6841 taatatcttc tttctgtaat tcatcaatcg ttgaaggttc aacgctgcct aatttaacaa
     6901 attcctgatt actcattttg ttctcctgtt attaatattc caaagcacac tttctcaaat
     6961 atgctttgga attgaaccag cgtttgtgct tcccgattca ctgccagtgc ttaacctttc
     7021 cgctagttcg cacatcacca gtaaattcgc cacaactacc gtactattct ttcagtccga
     7081 gtagcttaga gagtttcaca acttgcctat aagttcattt accgcatacg ttttaccgct
     7141 ttatgcaaag attggttctg tctctccaat gtcattacat tgctaagtaa tccgcttgtc
     7201 gtgatgtgtt tttggtttaa tttttaaaga acaatgcctt tcggcgaggt ttagaacctt
     7261 tattcaagcc ctccgtgaag ggctttgata aaaattctta gtgaatgtag gcttgccaaa
     7321 gttgttgagc ttgctcggcg ttcattttgt cgctttggtt ccagtcgatt aacttgccat
     7381 ttctgaacat tgctctttca atcacaaact cttgcgtggc ttcattttca aagacctcaa
     7441 acacattgat gaaatcactg gtgcgttttt ctttgcgtcc gcataaaatg tagtctttgt
     7501 ggttatttag cgttgcttgt gcgttcattt tggtttcctc tttgtctgtg gcgttgtttg
     7561 ttttgatggg tttattatca caaattgaaa tcattaagtc aattcaattt gtaattattt
     7621 tagccaaaca aatttcaatt cgtgattaaa taattgattt taaagagaaa ttatttttag
     7681 aaaggttgtt tgattgcttg ttttttaaac acttaacata agaagagaaa gacaattagg
     7741 agaaaaagca cttaaaaaag attgtctttt ttattgtgcg tgatatattt gtatcacatt
     7801 gtgtttgcta ggtgttatta tgattaagag cttcaagcat aaaggcttaa aacaatattt
     7861 tgaaaaagga ataacaaaag gtattcagct taatcatcaa cgtaaaatcg atggtatttt
     7921 agatttgatt gattcagcag aaagtattga tgaatttatg cctttttacc aatgccacga
     7981 gttaaaagga aatcgaaaag gcatttattc tatgacggtt aatggcaact ggcggattac
     8041 atttgaattt gtaaatggcg atgcttatat tttgaattat gaagattatc attaggggga
     8101 gttatgcgta aaccagcaca tccggggcaa attttattag atggatttat tgaaccaaat
     8161 aacatcaaaa ttaaagaatt agcagatcat cttgggtttt ctcgtgaaac tttatcaaga
     8221 gtattacacg gcaaaacacc aatgactgca aatttagcgt taagtttaga agaggcagga
     8281 attagtacgg ctaagttatg gctaaactta caaactaaat atgatttatg ggagttaaag
     8341 cagcagcggt taaatcctgt tatgcctttt cattttggtg gaaattatgg agaaactgct
     8401 cacgcttaat aatgccctct tcggaggatt ttattgttct taggaaaaga aaaccgccac
     8461 gagggcggtt tattcaagga atatt
//
LOCUS       DANLXK010000102         8317 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.103, whole genome shotgun sequence.
ACCESSION   DANLXK010000102 DANLXK010000000
VERSION     DANLXK010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8317
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            49..1041
                     /locus_tag="PXD88_002006"
     CDS             49..1041
                     /locus_tag="PXD88_002006"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL6281549.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSATYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVALTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1165..1584)
                     /gene="atpC"
                     /locus_tag="PXD88_002007"
     CDS             complement(1165..1584)
                     /gene="atpC"
                     /locus_tag="PXD88_002007"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL6281550.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1612..2985)
                     /gene="atpD"
                     /locus_tag="PXD88_002008"
     CDS             complement(1612..2985)
                     /gene="atpD"
                     /locus_tag="PXD88_002008"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL6281551.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(3006..3872)
                     /gene="atpG"
                     /locus_tag="PXD88_002009"
     CDS             complement(3006..3872)
                     /gene="atpG"
                     /locus_tag="PXD88_002009"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL6281552.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3898..5439)
                     /gene="atpA"
                     /locus_tag="PXD88_002010"
     CDS             complement(3898..5439)
                     /gene="atpA"
                     /locus_tag="PXD88_002010"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL6281553.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5452..5985)
                     /gene="atpH"
                     /locus_tag="PXD88_002011"
     CDS             complement(5452..5985)
                     /gene="atpH"
                     /locus_tag="PXD88_002011"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL6281554.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(5999..6469)
                     /gene="atpF"
                     /locus_tag="PXD88_002012"
     CDS             complement(5999..6469)
                     /gene="atpF"
                     /locus_tag="PXD88_002012"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL6281555.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(6530..6784)
                     /gene="atpE"
                     /locus_tag="PXD88_002013"
     CDS             complement(6530..6784)
                     /gene="atpE"
                     /locus_tag="PXD88_002013"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL6281556.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6902..7690)
                     /gene="atpB"
                     /locus_tag="PXD88_002014"
     CDS             complement(6902..7690)
                     /gene="atpB"
                     /locus_tag="PXD88_002014"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL6281557.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7713..8096)
                     /locus_tag="PXD88_002015"
     CDS             complement(7713..8096)
                     /locus_tag="PXD88_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL6281558.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
BASE COUNT         2492 a         1862 c         1545 g         2418 t
ORIGIN      
        1 aagcacgaga aataaaaaat caacattctt taattaggaa agcaaacaat gaaaaaatct
       61 tttattttac agcaacaaga aatcagtttt gttaagaaca catttactca atatttaatt
      121 gataaattag gcattattga agttcagggg cctattttga gcgaagtcgg caacggtatg
      181 caagacaacc tttccggtat cgaaaaagca gtaaaagtaa acgtaaaatg tattccaagc
      241 gctacttatg aagtggttca ttctcttgca aaatggaaac gccacacctt agctcgtttt
      301 ggatttaaag aaggagaagg gttatttgtt catatgaaag ctcttcgccc tgatgaagat
      361 tctttagatc gcacacactc ggtatatgtt gaccaatggg actgggaaaa agtcattcct
      421 gaaggtcgcc gcaacttcga tttcttaaaa gaaacggtaa acgaaatcta taaagcaatt
      481 cgtttaaccg aattagcggt ggaggctcgt ttcgatattc catctgtatt gcctaaacaa
      541 attactttcg ttcacagcga agacttagtg caacgctatc cgaatatgac cagcaaagag
      601 cgtgaaaatg ctatctgtaa agagtgcgga gcggtgttct taatcggtat cggcggcaaa
      661 ttatcagacg gtaaacctca cgatggacga gctccggact atgatgactg gacaaccgag
      721 tccgaacaag gctacaaagg cttaaacggc gatattttag tttggaacga agaactcggc
      781 acagcctttg aactttcctc aatgggtatt cgtgtagatg aaaccgcctt acgcttacaa
      841 gttgctttaa ctggcgacga agaccgcctc gaaatggatt ggcacaaaga tttattagcc
      901 ggcagactcc cgctttctat cggcggcggt atcggtcaat ctcgcttagt gatgttctta
      961 ctacgcaaaa aacacatcgg tgaggtgcaa tccagtgtct ggccaaaagc ggtatttgaa
     1021 gagtttgaga atattcttta ataaaacaaa aaagcgaacc ttagggttcg cttttgcttt
     1081 ctacaagcgg tcttattttg caaaaaattt actgttttta accgcttgta aaacaaaacc
     1141 ccactttcgt ggggtttttt gatattaacg tttattcgct aatttggttt tagtgagttc
     1201 gtaaacacgc agtttcgcaa tttctctcgc taacttcgcg gtcatatccg catcgctggt
     1261 ttttgaaagt gtttcttcta ctttgcgttt tgcggcaaga atacgctgtt cgtctagttc
     1321 ttcaccacga attgcggtat cagccaacac tgttactacg gtcggttgta cttcaaggaa
     1381 accacctgaa acgtagataa actcttcttt gccgtcagct aaagtgaatt taaccattcc
     1441 cggtttaatt gcggttaata acggtgcatg ccctgcatac acccctaatt caccatctgt
     1501 ccctgaaaca cgcacgctgg taactgtgcc ttcaaagatt ttacgttctg cactcactac
     1561 cgtgagttca aattgagatg ccatgttgtt ctcctttagt ttagaacaaa attacatctg
     1621 ttttgctctt tcaaccactt cgtcaattga acccgccata tagaacgctt gttccggaat
     1681 atggtcgtat tcgccttcta aaatgccttt aaagccacga attgtttctt ttaacggtac
     1741 gaatttgccc ggtacgccgt tgaatacttc cgcaacgtgg aatggttgtg aaaggaaacg
     1801 ttcgatttta cgcgcacgag caacaaggcg tttgtcgtct tccgataatt catccatacc
     1861 caaaattgca atgatgtctt ttaactcttt ataacgttgt aatgtacctt gtacaccacg
     1921 agcaacgtta tagtgttcct caccaaccac gagtggatct aactgacgag aggttgagtc
     1981 aagagggtca accgccgggt aaataccgag tgaagcgata ttacggctta ataccaccgt
     2041 tgagtctaag tgggcaaagg tagttgccgg agacgggtca gttaagtcat ccgccggaac
     2101 atataccgct tgcacagagg taatagagcc ggttttggtt gaggtaatac gctcctgtaa
     2161 tacgcccatc tcttctgcaa gagtcggctg ataacctacc gcagacggca tacgacctaa
     2221 taacgcagat acttcggtac cagctaaagt ataacggtag atgttatcca cgaagaataa
     2281 tacgtcacga ccttcatcac ggaatttttc tgccatggtt aagccggtta atgccacacg
     2341 cagacggttg cccggtggtt cgttcatttg accgtaaacc agcgatactt tgtctaatac
     2401 gttagagtct ttcatttcgt ggtagaagtc attaccctca cgagtacgct cacctacacc
     2461 ggcgaatacc gagtaaccgc tatgttcgat agcgatgtta cggattaact ccatcatatt
     2521 tacggtttta cctacacccg caccaccgaa taagccaact ttaccaccct tagcaaatgg
     2581 agcaactaag tcgataactt tgataccggt ctctaaaagc tcggtgctgt tcgcttgttc
     2641 ttcgtagctt ggtgctgcac ggtggattgt ccaacgttct tcttcaccga ttgggcctgc
     2701 ttcatcaatt ggctcaccta atacgttcat aatacgaccg agtgtttttg taccaaccgg
     2761 tacttcaatc gctttattcg tattttcaac ttttaagcca cgttttaaac catcagatga
     2821 accaagtgcg atacaacgga ccacaccgcc acctaattgt tgttgaactt caagggttaa
     2881 tcctgattca acttttaatg catcataaac ttttggtact gcatcttgcg gaaactcaac
     2941 atcgattacc gcaccgatga tctgtacaat ttttcccgtt gccattaccg ttcctctatt
     3001 cattgttaaa ttgctgcggc acccgcgaca atttcattta attcattcgt aatacttgct
     3061 tgacgagctt tgttatacac taactgtaac tcattaatca gattacctgc gttatcggtt
     3121 gctgctttca ttgccaccat tcgagcagcc tgttcagacg caagattatc taccactgcc
     3181 tgataaactt gagattctaa ataacgaacc agtaagctgt ctaataacgc ttgtggattt
     3241 ggttcataga gataatccca agaaccagtt tgctctaatg agtcattttc cagtgcaggc
     3301 aaaggaagca actgttgtac tgtcggtttt tgtgacatcg tgtttataaa acggttatat
     3361 accacataca cttcatcaat ttcgccttca cggtaggcat ttaccatacc attaacaata
     3421 ccgactaaat cttccattgc cggtgtatca cccaatccat tgatatgacc tttaatctct
     3481 agccccattg ggttaaaaaa ggagatccct ttatttccca ccacagcaag tcgagactta
     3541 acaccttggt catctttttc tttcaattca tgtaaaacgg ttttaaataa attgatattt
     3601 aagccaccac ataaaccgcg atcggttgaa actactaaat agccaacttt ttttaccgga
     3661 cgtggggtca aaaatgggtg tttatactca atgttacctt tggcaatatg gctaattgcc
     3721 ttgcgaatac tttcagcata agggcgagaa gccgccatac gctcttgggt tttacgcatt
     3781 tttgatgcgg caaccatttc catcgctttg gtaatttttt gtgtattacg aacacttgca
     3841 attttggttc ttatctcttt agcacctgcc atattatttc tccgctaaaa agttagatta
     3901 ccaagcactg ttctttttga aaccagataa aatctcgttc aatttatctt taatttcatc
     3961 gttgaaattg ccggattttg acagttcttg cataaactcg ccgtagttac tttgagcata
     4021 agctaataag tttgcttcaa atgagccaac acgctcaacc ggaatatcat ctaagtaacc
     4081 gtattcagct gctgctaatg ataaacctaa ttgtgcaaca gacatcggct cgaattgttt
     4141 ttgtttcaac aattcagtta ctttttgacc gtgtgaaagc tgtttacgtg ttgcttcatc
     4201 aagatctgat gcgaactggg caaatgccgc taattcacgg tattgagcaa gtgcggtacg
     4261 gataccaccg gcaagcttct taaccagttt agtttgtgca gaaccaccta cacgggaaac
     4321 cgagataccc gggtttaccg cagggcgaat accggcattg aataagcctg attctaagaa
     4381 aatctgacca tcggtaattg aaattacgtt agtcggtacg aaggctgaaa cgtcacctgc
     4441 ttgggtttcg atgatcggta atgcggttaa agaaccggtt tgacctttca cagcaccgtt
     4501 agtgaaacgt tctacatagt ctgcatttac acgagacgca cgctctaata agcgagagtg
     4561 tagatagaac acatcacccg ggaatgcttc acgacccggt ggacggcgta ataacaatga
     4621 aatttgacgg taagcaactg cttgcttaga caaatcatcg taaacgatca acgcatcttc
     4681 accacggtca cggaagtatt cacccattgc acaacctgca taaggtgcaa gatattgtaa
     4741 tgcagcagat tcagacgcag aagccactac aacgatagtg ttcgctaatg caccgtgttc
     4801 ttctaattta cgcaccacgt tggcgatagt tgatgccttt tgaccgattg caacgtagat
     4861 acatttaatg cctgaatcac gttggttgat gatcgcatca atcgctaatg cggttttacc
     4921 ggtttgacgg tcacctataa tcaattcacg ctgaccacga ccgattggta ccattgagtc
     4981 caccgctttg taaccggttt gaaccggttg atcaaccgat tgacggtcga taacgcccgg
     5041 tgcgatcact tcgattggtg agaaaccgtc attttggatt tcgcctttac catcgattgg
     5101 ctgacctaag gtatttacaa cacgacctaa taagccacga ccaaccggca cttctaaaat
     5161 acgaccggta cattgtactt gcataccttc tgctaaatcg gcataaggtc ccattacaac
     5221 tgcaccaaca gaatctcttt ctaagtttaa tgcaatcgca taacgattgc ccggtaatgc
     5281 aatcatttca ccttgcatta catcagataa gccgtggata cgaataaccc cgtcacttac
     5341 cgaaacgatt gtccctgtgc tttgagcttc actcaccaca ttaaactggg caatacgttt
     5401 tttaatcaat tcactaattt cagttgaatt tagttgcatt ttttattcct cttacaagct
     5461 caactcttga ctcaagcggt ttagctgtcc acgactacta ccatcaatca ctacatcatc
     5521 ataacgaatg atcacacccg caattaatga actatctatt gatgaagtaa tacgtacttt
     5581 cgttccgagt cgcttttcca tcgcattggc aatttttgct tcttgtgcat ctgttaattt
     5641 atctgcagaa acaacctcaa catctttaat tgattcctgt tctgctctta attctaaaaa
     5701 tgcattcaat accgcaggta atactgctaa acgcttgtta tcagccatta cgcgaatgaa
     5761 attttgccca tattgatcta attgttcgcc acaaatcttg ataaacgtct cagaaatctg
     5821 accgcttgca agtgatgagt taagaaaact agctacttgc tcatcgttag cgacggcggc
     5881 agaaaaagtt aacatctgct gccattgttc caattgacct tgttctaaag caaaatcgaa
     5941 agccgcttta gcataggggc gagctactgt gcttaattct gacatctgcc cctcctagtt
     6001 atagttccgc aactagctta tcaataatat cgttgttcgc agcggcatcc accgaacgac
     6061 ccacgatttt ttctgcacca gcaatagcca atgcagccac tttttgacga agctcttctt
     6121 gaacgcgttt acgttcgctt tcaacttccg cgtaaccctg ttcaataata cgttgacgtt
     6181 ccacttcagc ttctgcttgt acagattcta aaatttcatt acgacgtttt gttgctaaat
     6241 caatgatatt ttgtgcttct tctttcgctc taaggatttc ttgatccgca gccgctttag
     6301 aatcagcttg ttcttgtttc gctttttcgg cagaagccaa tgcgctagca atatttgcct
     6361 gacgctcttc tatcactcga attagcggtg gccatacaaa cttcatacag aacgcaacaa
     6421 aaagtgcgaa cgcaatcagt tgaccaatta gtgttgcatt taaattcaca acgccctcct
     6481 aaaagccggt aaagttattc aactgaataa cggttaatca aatcccgact tatttcaata
     6541 aatcaatgaa cgggtttgcg aagatgaata gtaatgaaat acctacagcg atcattgcga
     6601 tagcatctaa aagaccagca acgataaaca ttttagtttg taagcttgat gctaattccg
     6661 gctgacgtgc agatgactct aagaatttgc cacctaagat agcaaagccg atagcagtac
     6721 caagagcagc gaaagctaat aaaattgaag caccaataat tgttgctgtg attactgatt
     6781 ccataatgtt ctccattaga ttgaggaatt agcccgaagg ctgggttgtt gataaaaata
     6841 catatcaagc ggtcaatatt ttgcaaaaat ttgcgaaaaa cctaccgctt gtaaggctag
     6901 tttaatgatc cgctttgtta taagcgatac tcaaataaac aatcgttagc atcataaaaa
     6961 taaaggcttg aagcgtaata actaaaatat ggaaaatcgc ccaaaccaag tgtaatggaa
     7021 tccccaacgc ctgtagagcg aagttgtctg ccatatacat tactgcaata aggataaaga
     7081 ttaactcacc tgcatacata ttaccgaata aacggaacgc caatgaaatc ggttttgcca
     7141 aaagcgttac cgtttcaaga ataaagttta ccggaatgaa tgcccagtgg ttaaacgggt
     7201 gtaacgtgta ttctttcact aaaccgccaa aacctttcga tttcaccgtg taaaataaaa
     7261 ttaacgcaaa tacacaaata gacataccca gtgttgcact aatatctgcc gttggtactg
     7321 cacgcaaata gtgaatacca aacagattgg ctaactgtgg taagaaatcg accgggataa
     7381 ggtcgatcgc attcataata aacacccaac agaaaatcgt taatgctaat ggtgcaatta
     7441 cattgcgagg tccgtggaag ttatccttca ctaaaccgtt tacccactca ataacaatct
     7501 caacaaaaca ttgcaatttt cccggaacgc ccgttgttgc attttttgct acacgcgaga
     7561 acacccataa aaaaatcgca cctgccacta aagagaagaa cagtgtatct aaatgcactg
     7621 cccaaaagcc ttcacctgtc gataaaaaac tcaagtgatg gctaatatat tctgctgtcg
     7681 ttccagccat aacatatcct tttaaattaa aattagtggt gatgtttgct taatacaaac
     7741 gggatcatat tatttaaaaa taatgcgata aaataaccca cgaaaaacaa cacaacatct
     7801 agagcaggga taagtttaaa acagccgatc accaaaataa tagtaaccaa ccatttcatt
     7861 ccttcaccac gatagaaagc ggtcattttt gactgatttt ttgcagattt cttaaagaaa
     7921 acccaatata caaacacaag atgaggcaaa aaactcgcta aagcaccgcc tagaaaggaa
     7981 aaattaaaat tcattttcca taaagacact ccaagtgcaa aaacgcacaa gagaaaaaat
     8041 tcaaccttta atgcttgttt atattgtgat tttgctctat tgattacagc tgacacattt
     8101 tatccttttt gaataagtaa accacacaat caggctaata attagccact gttgaatcaa
     8161 agaaaatccg tgctaaatta tactttacaa atgaattgtt gcaaccgaaa agcgacacaa
     8221 aaacttgtta ttcttcacat ttttgaaaaa aaattttatt tacgttgcat ttttttgagt
     8281 aaaaccatca aaatcagtta acaaaaaaac aacaaat
//
LOCUS       DANLXK010000103         8281 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.104, whole genome shotgun sequence.
ACCESSION   DANLXK010000103 DANLXK010000000
VERSION     DANLXK010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8281
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(374..2044)
                     /gene="glnS"
                     /locus_tag="PXD88_002016"
     CDS             complement(374..2044)
                     /gene="glnS"
                     /locus_tag="PXD88_002016"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL6281559.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2205..2648)
                     /locus_tag="PXD88_002017"
     CDS             complement(2205..2648)
                     /locus_tag="PXD88_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL6281560.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(2699..3274)
                     /locus_tag="PXD88_002018"
     CDS             complement(2699..3274)
                     /locus_tag="PXD88_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL6281561.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3381..4271
                     /locus_tag="PXD88_002019"
     CDS             3381..4271
                     /locus_tag="PXD88_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6281562.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4338..4904)
                     /gene="efp"
                     /locus_tag="PXD88_002020"
     CDS             complement(4338..4904)
                     /gene="efp"
                     /locus_tag="PXD88_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL6281563.1"
                     /translation="MASYSTNDFKKGLKFIQDGEPCVIVENEFVKPGKGQAFTRTKIR
                     KLISGKVLEINFKSGTSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGD
                     NVKWLVDNAECIVTLWNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGA
                     VVNVPLFVQIGEVIRVDTRSGEYVSRVK"
     gene            5071..5640
                     /locus_tag="PXD88_002021"
     CDS             5071..5640
                     /locus_tag="PXD88_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281564.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
     gene            5694..6686
                     /gene="epmB"
                     /locus_tag="PXD88_002022"
     CDS             5694..6686
                     /gene="epmB"
                     /locus_tag="PXD88_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL6281565.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(6786..8189)
                     /gene="asnS"
                     /locus_tag="PXD88_002023"
     CDS             complement(6786..8189)
                     /gene="asnS"
                     /locus_tag="PXD88_002023"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL6281566.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
BASE COUNT         2373 a         1782 c         1721 g         2405 t
ORIGIN      
        1 tcttatctat tcttcgagaa gacaatgcta tcataaaaga gcatcacttt tggtttccaa
       61 agattataga aagctcaaat aatacactac ctcataattt aaaatgaaac gtttcaattg
      121 gaaaaagtgg attttgtgac tgagatcaca aatttaaaca ttggtctgta tttttgagag
      181 attttgtttg aaactgccgg caaattcgct taaccttaag gtaacaagaa taagtgttgt
      241 acctagcaac ctaacacata aatttgcttt ccgagtggcc ccaagaattg gggctttttt
      301 tatgcttgat gagtcgtttt gagagtaaaa aaataccagc atatttgctg gtatttgaat
      361 gaagagagtt agattagaac gctacgcttt cttttaagct gacagttaag ttaaatacaa
      421 ggttgtctgc cgaaccatct ttgctgtcta agcagtagta accttcacgc tcgaattggt
      481 agtcttgttc cggtttggcg tgagctaaac ttgactcaac aaaaccatgc ttaaccacta
      541 atgattcagg atttagcacc gcattgatgt cttcttccgc ccccgggttt ggtactgtaa
      601 ataggcggtc gtaaatgcgg aactctgccg gtttgttatc ttcagcagat acccaatgaa
      661 tcacgccttt tactttgcga ccatcagccg gatttttgcc caatgtatcc gggtcgtatg
      721 tgcaaaaaat agttgaaatt cgaccgcttg catctttttc cacacgctca gctttaatca
      781 cataggcatt gcgtaaacga acttctttgc ctaagactaa acgtttatat tgcttattgg
      841 cttcttcacg gaagtcggct tcatcaatat aaatctcacg ggtgaacggt aaatcacgct
      901 cgccaagctc tggacgattt gggtgattag gggcttttaa tatttccttt tcaccgaagt
      961 tttcaatcac cactcgaacc gggttaatca ccgccatcgc gcgtggtgcg ttttcattta
     1021 agtcttcacg aatgcacgct tcaagggcag agtattccac cacgttatct tgcttggtta
     1081 ccccaatacg gcgacaaaat tcacgtaaag acgctggggt ataaccacgg cggcgtaagc
     1141 cggaaatggt tggcatacga gggtcattcc aaccatcaac aatgccgtct gtgactaatt
     1201 ttaataattt acgcttagag gttaaagtac cttctaaatt taaacgtgaa aattcgtatt
     1261 ggtgcggtaa cggtctttca atcgaaatat tgtccagcac ccaatcatat aagcggcggt
     1321 tatcttggaa ctctagcgta catagcgagt gagtgattcg ctcaatcgca tcggaaatgc
     1381 agtgggtaaa atcgtacatc gggtagatgc accatttatc accggtttga tgatggtgag
     1441 caaatttcac acggtaaagc accggatctc gcatcacaat aaacggggac gccatatcaa
     1501 tttttgctct caagcaggct ttcccttccg caaactctcc gtttttcatt ttttcgaata
     1561 acgctaagtt ttcttccacg ctacgatcac ggtaagggct gtttttgccc ggctcggtta
     1621 aagtaccacg gtattcacgc atttcatcag gcgataattc atcaacatag gctaatcctt
     1681 tgttgattaa ctcaatcgca tagccataaa gctggtcaaa atagtctgag gcataacgag
     1741 gctcaccctc ccatttaaaa cctagccact ccacatcttg cttaattgaa tctacatatt
     1801 ccacgtcttc tttaaccggg ttggtatcat caaaacgcaa gttacataaa ccgttataat
     1861 cttgagcgat accaaaattt aaacagatag atttagcgtg tccgatatgc aaataaccgt
     1921 ttggttcagg tggaaaacga gtgtaaacat tgttgtgctt tccgcttgct aaatcttcat
     1981 caataatatg ggtaataaaa ttggctcgag tgccagtttc tgccgttaaa atttcttcgc
     2041 tcatagttct ctctaaatgt atcaataaaa ataacggatt attctacact taattgaaac
     2101 agacttaaag actaaagcaa aattcctcgg tttcctccaa agaattttgc tgttttagta
     2161 agatgcaatg gaattgcaaa tttttagcta aatttaaccg cttgttattg cctgatttca
     2221 cggctttcgc tgatcataaa attcgcaatc cgtttggcaa tccgccattt accctcttgt
     2281 ttaacatagg tatcggcata acgcacgctg tgatcgtgca agatctcttt gccctctttg
     2341 gtttctacca gtttcaccgc acaatagttg atcgctgtgg cgttattttc atcaataaaa
     2401 ggcacggtat gctgaccgtt taaatgataa acgctgtgaa acggggttaa aaaggtggta
     2461 aacacctgtt cgatttctgc cacgccgtgc atttcaaaca ccaattttcc gccgatgtag
     2521 gtgtttacga cggcatcttg cgtgaaaagc ggcatctgct cggcaacctt tttttcatcg
     2581 gcaaggttag agaatgtatc tactaaatct tttagtgcta aacgatcttg gatttgttgt
     2641 aagttcattg tgttttcctt ctgatttttg caaattttct ttggtttttc accgcttgtt
     2701 aggctgcaat accaacactt tcacggattt cgctgttttc acgcaaaatg cgagccacaa
     2761 aatcggcaat ggatttgcgg gaaacgctgt gtcctttgaa cggttcgcct ttgtgagtca
     2821 gctgatattg cacttccgaa ccgttggtaa accagcccgg gcggacaacg gtataatcca
     2881 actcgctggc ttcaatcacg gctgccgatt ggcggtaagg ctctaaaatt gccccgtgat
     2941 cttcgccggt ttcgccataa atccccattg agctaatcca aaccaagcgt tttacctgag
     3001 cttcattcat tgcgttcacc acatttcccg ccatcgcttt taagtcgccg gcaagtccag
     3061 cgtaaacggc atcaacgcct tgcattgctt gggttaatgc gtggaaatcc aacacatcgc
     3121 cttgcacaat tttgacgcgt tcagtttcaa atttcgctac tgattgcgga cgacgggcaa
     3181 aaagggttaa ttgcacatta ttgtctttta gcagttcagg aatcacgaca ttcgctaggc
     3241 taccgcttgc tcctaaaatt aagatctgtt tcattgctgt tctccattga atgaagtcag
     3301 tatagcggtg tagattgcat ttgattagta gggtaaaatc gcttgaagta atgagaaaaa
     3361 ttcattaata aggtggttaa atgaaagaaa acctcaacga tttaagagct tttttgttgg
     3421 tagcacaaac gagcagtttt accaaagcag cagcacagat gggcgtgtcg cagtcggcgt
     3481 tgtcgcacag cattcggggg attgaagaac ggttgcaaat caagctgttt catcgcacca
     3541 ctcgtagcat ttcaaccacc gaggcagggg agaggctgta tcaacggctg ttaccgctgt
     3601 ttgatgaaat cgaccaagaa gtaaatgggc tgagtgagtt tcgcaatgcg ttaaaaggcg
     3661 ggctgagaat taacggtaat gaacacgttt tccgtgatgt gctggcagat aaattcgctg
     3721 agtttgtcaa acgttaccct gaagtagcat tggagctagt ggcggaagat cgctttgtag
     3781 atattgtcgc cgagcgtttt gatgccggta ttcggcttgg ggcagatgtg gcgaaagata
     3841 tgattgcact acgcatttcg cccgatgtga aaatgaccgc agctgccagc cccaactatt
     3901 tggcacagca cggcacgccg aaaacgccct ttgatttaac cgaacatcat tgtctcaaac
     3961 atcgtcttgc gacattgggc ggcattctgg cgtgggaatt tcgggatccc atcaccaaga
     4021 aaatcgttaa atttcaaccg cagggcaatc ttactgccaa taacggcttc ttgctgcaac
     4081 actatgccaa acaaggttta ggcattcttt ggagtccgca agacagcatt caaaccgagc
     4141 tggataacgg cagcctcgtg ccgattttaa ccgactgggc aatgcagtat gagggctatc
     4201 atctctatta ccccaaccgt cgccaaaatt cgcctttgct gaaagcgtta attgatgtgc
     4261 tgagaggata ggtaaaaatg agcggtcgtt tttagcaaaa aattgaccaa aaaacgacca
     4321 cttgtagaga agctaaatta tttcacacga gaaacatatt cgcctgaacg ggtatccaca
     4381 cggataactt caccgatttg aacgaataaa ggcacgttta ccacagcacc ggtgcttaat
     4441 gttgccggtt taccgcctgt acctgcagta tcgcctttta agcccgggtc ggtttcgacg
     4501 atttctaact caacgaagtt tggtggtgtg actgcaattg ctgaaccgtt ccataaagtc
     4561 acgatacatt ctgcattatc aactaaccat tttacgttgt cgcctaacgc tttttcatct
     4621 accgagattt gttcaaaggt ttcagggtgc ataaagtacc agaaatcacc atcgctgtaa
     4681 gagtagttgt agttagaatc tactacatct gctgcttcaa ccgaagtgcc tgatttgaag
     4741 ttgatctcta atactttgcc agagattaat ttacggattt tagtacgggt aaatgcttga
     4801 cctttacccg gttttacgaa ttcgttttca acaattacac aaggttcgcc atcttgaata
     4861 aattttaaac cttttttaaa gtcgttagtg ctgtagctag ccattatttc ctcaattatt
     4921 taaaaaataa caataaatta acaaattttg aacccaaccc tattgggttt gtcaaaaaga
     4981 gccatataat aacctaaatt cacaaaatta gcgaaagatc tcttgcgatt tttgctataa
     5041 tttttcaaac tttattgata aggaatgcga atgaaaaaac tgattactct ttctgcgatt
     5101 ttagccgttt ctgttgcaac cgtggcagag gcaaaacgtg gcggtgggag cttccgttca
     5161 gttagcccgt caaaagcggt agcaactaag ccggtagctt ctcaaaaatc aaccacaaat
     5221 cagcaaacgc aacaaaaaga tgctactttt gccaatacgc caaacagtgc aactgcccag
     5281 ccacaagtgc gtcaaggcag cacgatggca aatgtagcga tgggggcagc agccggttat
     5341 attttaggtg atatgatgtc atcaaatgca catgcaaatc agcctagcca gcctgcggat
     5401 gcaaatgcac aagcggtcaa ttctgcacaa aatgttgcaa atggagcagt tcctgctatt
     5461 gcagaattta agagtattgg cggtcaaatc gatccgtttt tagtagaaaa aaccgatggt
     5521 tatcgccgtt attgtatttc aggcgtgcaa tacctagtcg ctgcacaagg tgtacaaacc
     5581 tcaccaactg taatggttaa tccaaatggc acgccattac aatgtaactt aattccataa
     5641 ttatttttat ttgcgggcag gcaaaaacct gccccttgta tctacaatat tcaatgcaac
     5701 caattcaaat caaaccgctt tggctaaccg agctggctca agcctttaat aaccctatcg
     5761 acttattaca atttcttgaa ctcaatccaa atgattttga gggcgatata gctgcccgta
     5821 aattatttgc tcttcgagtg ccaagaatgt tcgccgaaaa aatggaaaag ggtaacccaa
     5881 acgatccgct ttttttgcaa gcaatgtctt tacaggcgga atttattgag gcagaagggt
     5941 ttgtggtaga tccattggaa gagcaacaaa gcccagcacc gaatatttta cataaatacc
     6001 ataaccgttt gttatttatg ctaaaaaaca gttgtgcgat taactgccgt tactgttttc
     6061 gccgtcattt cccttatgag gaagtgaaaa gcggtaaagc tgtgtggcaa cagggactaa
     6121 cttatattgc tgagcatccc gagctggagg aagtgattct gtccggtggt gatccgctga
     6181 tggcaaaaga tcaggactta gattggatat taacgcaatt agagcagatt tcgcatatca
     6241 aaaccctgcg tattcattca cgcttgccgg tcgttattcc caatcgaatt acgacagaat
     6301 tatgtgaacg gttatcaaaa tctcgcttga atgtcgtgtt ggttacccat attaatcacg
     6361 ccaatgaaat tgatgctgtt tttgcaaaca aaatggctca actgaaaaaa gccggcgttg
     6421 tattgctgaa tcaatcggtg atgttaaaag gtgtaaacga taatgctcaa accttaaaaa
     6481 ggttaagtga taaacttttt gaatatggga ttttgcctta ctatttgcat ttatttgata
     6541 aagtggcagg ggcgagccat ttctatattg aagatgaaca ggctggtgag atttaccgag
     6601 aattacagcg tatcacttca ggctatcttg tgccaaagct ggcaagagaa atagcgaaag
     6661 agccaaataa aattttgaaa ggttagctta aacagaaatc aagaaacaaa aggcgaaaat
     6721 ggtaaaattt tcgccttttt taaccgcttg ttgcaagcgg ttaaattctc ttactttttt
     6781 gcaaattaga agttcgcatt gcgtggagca cgtgggaatg ggattacatc acgaatgttt
     6841 tgtaacccgg ttacatacac gattaaacgc tcgaaaccta aaccgaaacc tgagtgtggc
     6901 actgtaccgt atttacgcaa atcacgatac caccagtaat cttcagggtt taagcccatt
     6961 tcattcatac gctgatctaa cacttctaaa cgttcttcac gttgagaacc accgataatt
     7021 tcaccgattc ccggagctaa aacgtccatt gcggcaaccg ttttgccgtc atcatttaaa
     7081 cgcatataga aggctttaat gtcttttgga tagtttttca cgaccaccgg cgatttaaag
     7141 tgttcttcgg ctaagaaacg ctcgtgttca gaggaaagat cgattcccca agacaccggg
     7201 aattcaaatt ctttgccgga tttcaataag atctcaatcg catcggtgta atctacttga
     7261 gcaaatggcg aattgataaa gttttctaaa cgactaatcg cttctttatc aacgtgttta
     7321 acgaaaaatt ccatatcatc tttacgttct gcaagcaccg ctttaaacac atatttcagc
     7381 atatcttcgg ctaattttgc attgtcgttt aagtcggcaa aggcaacttc cggctccatc
     7441 atccagaatt ctgcaagatg gcgagttgtg tttgagtttt ctgcacggaa tgtcggaccg
     7501 aaagtataaa ctttacttaa ggcacacgca taggtttccg catttaactg gccggatacg
     7561 gttaagaacg attctttacc gaagaaatct tggttaaaat ccactttgcc gttttcgcca
     7621 cgaggtagat tttctaaatc cagcgtagaa acacggaaca tttcacctgc accttcagta
     7681 tctgaggcgg taattacagg tgttgctacc caatagaaac cttgctcgtg gaagaaacgg
     7741 tggatagctt gagctaaaca gtgacgaaca cgagcaactg caccgattaa gttcgtacga
     7801 gggcgtaagt gagcgacttc acgcagatat tcgatagagt ggcgtttcgc tgccattggg
     7861 taggtatcag gatcttccac ccaaccaagc acttccactt tacttgcttg taattcaacg
     7921 gcttgacctt cagcagggga ttccacaact ttaccggtca ccaccacaga gcaacctgcg
     7981 gttaaatgta atacttcggc attataattt ggtagatcgt tattaataat cgcttgaatt
     8041 gggtcaaagc aagaaccatc gtaaacgctc aagaaagata aaccggcttt tgaatcacgg
     8101 cgggtacgca cccaaccacg cactgtcgct tcttcaccta ccgctatctt gccggatagg
     8161 atttccgaaa ctgttggaaa tttagacatt gaatacctca aattctttgt tgtgagtttt
     8221 aatataagaa acgttccgta ttctacaaga aaataggggg aaatataata attttacgga
     8281 a
//
LOCUS       DANLXK010000104         8277 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.105, whole genome shotgun sequence.
ACCESSION   DANLXK010000104 DANLXK010000000
VERSION     DANLXK010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8277
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..402
                     /locus_tag="PXD88_002024"
     CDS             <1..402
                     /locus_tag="PXD88_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL6281567.1"
                     /translation="AIGSYPAIKEIGEERAKKHQDILDLNRELYSAMVNRDFSALQTL
                     LSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLSTDFQGNQSSGLLRVNGEFFG
                     IERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            415..1308
                     /gene="murQ"
                     /locus_tag="PXD88_002025"
     CDS             415..1308
                     /gene="murQ"
                     /locus_tag="PXD88_002025"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL6281568.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(1392..2336)
                     /gene="prmB"
                     /locus_tag="PXD88_002026"
     CDS             complement(1392..2336)
                     /gene="prmB"
                     /locus_tag="PXD88_002026"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL6281569.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            2429..2974
                     /gene="smrB"
                     /locus_tag="PXD88_002027"
     CDS             2429..2974
                     /gene="smrB"
                     /locus_tag="PXD88_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL6281570.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            3038..3523
                     /locus_tag="PXD88_002028"
     CDS             3038..3523
                     /locus_tag="PXD88_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL6281571.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(3525..4274)
                     /locus_tag="PXD88_002029"
     CDS             complement(3525..4274)
                     /locus_tag="PXD88_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL6281572.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            4446..5309
                     /locus_tag="PXD88_002030"
     CDS             4446..5309
                     /locus_tag="PXD88_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL6281573.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            5433..6026
                     /locus_tag="PXD88_002031"
     CDS             5433..6026
                     /locus_tag="PXD88_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281574.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
     gene            6381..6692
                     /locus_tag="PXD88_002032"
     CDS             6381..6692
                     /locus_tag="PXD88_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281575.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
     gene            6692..7933
                     /locus_tag="PXD88_002033"
     CDS             6692..7933
                     /locus_tag="PXD88_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL6281576.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
BASE COUNT         2565 a         1562 c         1785 g         2365 t
ORIGIN      
        1 gcgattggaa gttatccggc aataaaagag attggcgagg agcgggcaaa aaaacatcaa
       61 gatatattag atttaaatag agaactttat agtgcaatgg tgaaccgtga tttttcggct
      121 ttgcaaacat tactaagcga tgattttgag ctttattcat caacaggtga agtgattgat
      181 aagcaagaat ggatcaaatt aatccaaaag agagtattgg aatttgataa ggttgatttg
      241 ctatctaccg attttcaggg gaatcaatca tctggattat taagagtaaa tggtgagttt
      301 tttgggatag agcgggataa tgtggtggta gaaatgaata ttcgaaccat tgtgagaaat
      361 acagaacgcc aaattaaatg tattgtgatt aaagaggttt aagtgtcgca actattgaat
      421 gccttagggc agatgattac cgaacaacgt aatccgaatt cgatgaatat tgaccgcctt
      481 tcagcgttag atatagtcca agtcatcaac caagaagaca aacaagtagc gattgcggtg
      541 gagcagtgcc tgcctcaaat tgcacaagcg gtggaaaaaa ttgtgcaagc ctttgagaaa
      601 ggtggacgat tggtttatgt cggtgccggc acgagcggaa gattaggggt gcttgatgct
      661 tcggaatgtc cgcccactta tggcgtaaaa cctgaaatgg tggttggatt aattgccggt
      721 ggtgagcggg cattacgttt cccgattgaa ggggcggaag ataatcgtga gcaaggcaaa
      781 gtagatttac aagcggtcaa ttttagcgaa aaagatgtat tggtcgggat tgcagccagt
      841 gggcgaacgc cttatgtgtt aggggcgatg gaatatgcta agcaacttgg tgcgaccacg
      901 gtgtcgattg ccagtaaccc aaattcggca atggcacaaa ttgcggatat tgcgattgaa
      961 accgttgtcg ggccggaagt gctaaccggt tccagccgta tgaaatccgg cacagctcaa
     1021 aaattggtat tgaatatgct cactactgcg tcgatgattt taatcggtaa atgctaccaa
     1081 aatttaatgg tagatgtgca agcaactaat gaaaaactca aagctagagc aattcggatt
     1141 gtgatgcaag cgacagaatg tgaacgagaa gtggctgaag atacactaaa attagccgaa
     1201 aataacgcta aattggcaat tatgatgatt ttaggtaact tagataagca gaaagccgaa
     1261 gatttattaa gccaaaatca agggcgatta caaaaagcgt taaaatagaa gtatgtctgc
     1321 tctccccttg tgggagagag acagatcaat cattcattca gaatgattga tcagagagag
     1381 gggaggcaga tttaagcaaa taaatggcga tgtttcacta gttcttcttt ggttaaactg
     1441 aacaccccta agccaccgtg ttcaaattcc agccagttaa acggcacact ggggaattgt
     1501 tcgattaaat gcaccatact gttgccgact tcgcagacta gcacgccatc atcatttaag
     1561 taatcagcgg cttgagcaag aatccgcttg gttaaatcta acccatcttt gcccgagcca
     1621 agagctaatg ccggctcgtg atggaactct tcgggcatat cgcctaagtc ttcttcatca
     1681 acataaggcg gattagtcac aattaagtcg tatttatctt gcggtaaatt gttaaacaga
     1741 tcggaacaga tcgggaaaac tcggtgagac acctgatgac gctcaatatt aatttgagca
     1801 acgtctaagg catcaaggga aagatcaacc gcatcgactt ctgcttccgg aaaacgctcg
     1861 gcacaggcaa tcgcaataca accgctgccg gtacacatat ctaaaattcg atgtggctcg
     1921 tttttgataa tgcctttaaa cccttttttg atcagctcac caatcggtga acgtggcacg
     1981 atcacacgct catcgacata atattcaccg ccacaaaacc aagccgagtt ggtaaggtat
     2041 gctacaggtt tgcgagagcc taaacgctca cagattaaat tgatgatacg ttctttctca
     2101 actcgagtta agcgagagga ataaagtgtt tccggtacat caaacggcaa ataaagccct
     2161 gccaacacta attgttgtgc ctcgtcccac gcattatcgt agccgtgccc gtaataaaga
     2221 tcagaggcat taaaatagct atacccccaa cgcatcatat cttgaatagt gactaaatca
     2281 ttcacaatgg gcagggcgga aatttcatca agaagttcgg tattatattt aaacattggc
     2341 gtgccttttt tcgtattgtt aaaatggctg tgttatacca cattttgctt tgtgttagaa
     2401 tgtaaaaatg aataagaagg aaaagataat gaacgatacg ttattagacg atgaatttgc
     2461 attattcaga gaggcagcaa aaggcacgaa aaagctgaca caaaatacct ttgtgccgaa
     2521 agcggaacct cgcaagaaat tgcaagaatt gcgagaatta aaagaaaaag ctgatacaga
     2581 attttatttc tcggatgaat atgagccttt gctgaaagaa gaaaatgaaa aagtgaaata
     2641 tctgcgagaa gatgttgatc cttatattct caaacagtta cggcgaggcg atttccaacc
     2701 cgagctgttt ttagatctgc atggtttaac tcgagaaaaa gcgaagaaag agttggcagc
     2761 gttgatttta gcctgtgagc gggaaaaggt atattgtgcc agtgtgatga ccggctttgg
     2821 cactcgcacg ctcaaagatc aaattccacg ctggttggtt cagcacccaa aagtaatggc
     2881 gttgcaccag gccccgaaag agtggggcgg agatgcctct attctaattt tggttgagca
     2941 gcctgaaaat cctgaaaaaa tgtttgggcg ttaaaattcg gctgaattgc caatttttta
     3001 ttaaaaacga ccgcttgtgt atcattaagg agaaatgatg tcagaacaaa ctttccacca
     3061 acttacagca ttattagatt cgcatcgagc tcgctatcga gtggtaggac atccttctgc
     3121 cgggaaatcg gaagaagtgg caaaaattcg aggaacagaa atcgggcaag gggcgaaagc
     3181 cttagtttgc aaggtaaaag gcaatggggt aaagcaagct gtgcttgcta tattacctgc
     3241 tgattaccaa gcggatttaa caaaaattgc agagcatctt ggtgggttaa gagcctcact
     3301 tgccagcccg gctgaagtgg cagaattgac cgattgtgta tttggggcaa ttccgccgtt
     3361 tagctttcac cccgatttat tattggtggc tgagccaagt ctgtttgagc gttatgctga
     3421 attagccttt aatgccggta cgttggaacg ttcgattatt ctgaataccg aggattacca
     3481 aaagatagtt aatcctgtgt tggttcaatt cgccaaaagc taggttatgg ggcgaaaaac
     3541 tccacgattt tgccaatagc gatatccatt aatttagggt tagaaaaagc gtgatctgcc
     3601 ccttcaatcg ggagcagttc aatcacgtta ttatcggcaa actgctgtga agtgcttaac
     3661 gccaccattt catcttccgt gccgtgcaga attaaaattt gctcggcata atccaaataa
     3721 tcgttttggg taatatcggt tagctcatca aaaaaggctt ggctgatttt catctggcga
     3781 tcaaaccccc acaaaatttc tcgccctttg gcaagttttt gccgttcctc ttctgacaag
     3841 cggttcatta acgaatggta gatttgtact gccggtgccc gcaatgcaat tttccgaaac
     3901 ggattgcctt tttccgccag atatttcaag gttaaatagc cgccaaaact agtgccgtag
     3961 gcatacagat ttttagcatt caggctggtt ttggcataat caatcaccag ttgcagataa
     4021 gtaatggatt cctcaaccga gagtttttta cgggcatcat caccgtggca agggaaatca
     4081 aaggcaaggg cagcgtagcc tttatatttt gagctaaggc gttccccaaa tttggtattc
     4141 gatttcagat ctttagacga accaaagccg tgcaacacaa tcactacatt ctcgatctgc
     4201 tgcaattctt tttcataaaa cagtttacag cgaatgctga gaccctgttc attaatctca
     4261 aagcgttttt ccattttatg ttaagtattg aaattgaaga tgacaaaatt ttagcactat
     4321 ttgagtgcaa gcggtcggat ctctcgcaaa atttgcaaat tttccggtaa atttaaccgc
     4381 ttgtactagc caaaatttaa gcatatttat agaatacagc cttcgttttt aaaaggagaa
     4441 atgaaatgtt acaacttatt ttagcgattt tatgtagcgt gactgtaggc gtgttgatta
     4501 aattcgcccg ccaaaaaggg attcgtatcg accaaagtat tgcggtgaac tatatcgtga
     4561 ctaccacgat gacgttttta ttactaaaac cggattacca agggcagtcg attaccgata
     4621 ttattgctaa taacccgact tcctatattt ttgtgatttt aagtatcaca ttgcctacta
     4681 ttttcttggt gcaagcaaaa gccctagagt ttgccggtat tatccgaacc gatgcggcac
     4741 aacgtttatc gctgttcctg ccgattttgg cggcattcac catttttggt gagcaggtta
     4801 cgcaaaataa attaattgca cttctgttag ctttcgtggc actcggttgc ttattatgga
     4861 aaggcaatca gggaatggaa aaaggcggaa aaattgcgat tatcagcctt gctctggttt
     4921 gggtaggcta tggcgtgaac gatattttat ttaaacagat tgccaaatca ggctctgctt
     4981 tccctgtcac cctttcgatt gcctttatcg gtgcaggctg ttttatgttt atctatttgc
     5041 tacttaaacg cactcaatgg cacgttccaa gtgtcttaac cggcttattg ctaggcgtgt
     5101 tgaacttcgg caatattctg ttctatattc aagctcacca agccatgaaa gatgacccaa
     5161 ctttagtctt cactggaatg aacttagggg taatttgctt aggcactttc gttggagcat
     5221 tcttctttaa agagaaaatc cacaaagtga actacttagg cgtggcgatt gcgattgtgg
     5281 cgattatttg cttgttttat tggcggtaaa tatactttcc aaaattaagg gcgaacataa
     5341 tgttcgccct taatttttga gtaatatagt gtaaaatatt caataaattc gaccgcttgt
     5401 tgtaccgatt catatttcat aaaggacaaa aaatgaagct aaaagcctta tctacactca
     5461 ttgcctcttc aatgctatat agtcagagtt ttgctgtacc gccggaaaaa acagctgaag
     5521 agccacagcc ctttttcaat aaaaccgaat ctgggtatga tttagtcttt aatgatcaaa
     5581 actatcgttt aattgaaacg gaattaaatg gcgagaaaat ccaattccgt gcctttgagc
     5641 ggattgtgta tgtgaacaat ccgattgagc cagattacca aacaattaat ctgtatgtgc
     5701 cggaagctta ctacaataat ggcgaaatca atggctacca agcggatacc gccccgatct
     5761 tcttgccaaa ttcagtgggg ggctatatgc cggcaaaagc ggcaagttat gataaaaaaa
     5821 gacgtgacgg ttcaccaggt acgattttgg tggcgttatc taaaggctat gtggtggcaa
     5881 gtgtgggagc aagaggacgc acgctacaaa aagagggaaa atacaccggc aaagcacctt
     5941 ctgccattat tgattcaaaa tccgccgccc ataaagcgtg tcggttcgag tccgaccact
     6001 ggcaccactc actatgtaaa atttagtttt acatagtttg ctgtaagcat ttgaattttg
     6061 aatcgtttgt gtaggattgt tcaaatcata ttcgcaaata cacagttact acgatgtatc
     6121 cagccaatac atccattggg attttccgtc cgaatttcag acgttctaga tcttacacat
     6181 tctttcaagt ttgtaaagcc tgaaaatcat tttttagatt gattttattt gaaaaaatct
     6241 attttttctt ttaattcaaa tttagtcaaa acttcaccag atattttttt ccgaaaaacc
     6301 ctctctacct attttactgt ttacataact gctcttgcaa ttgctataaa tggacattat
     6361 aatttccaaa aaacataaaa atggtaataa taatgctcag taaaacaaaa tcaccaactc
     6421 tgtttcctaa gtaccaaaat gccttgcttc aacttggaga aaatattagg ctagcctcaa
     6481 aaaggagaat gtttactcaa acattattgg ctcaaagaac tgggcttagc cgtgtaacag
     6541 tgagaaaaat tatgaatggt gatccaactg ttgcgattgg atactaccta atggttttag
     6601 gtgttctcgg tctagaacaa gatttcactg atgttggaaa ggatgatgag ttaggacgta
     6661 aattgcaaga tattgaatta ttaaggaaat aatgatgaat aaacgaattt atgtgtttgc
     6721 agattgggaa actttttcac agcctgaatt agttggggtg ctttcttctg atgtagtgag
     6781 aggcaaagaa aatttccgtt ttagctacga taacgagtgg ttaagttcac cctatgtaca
     6841 gcagattgat cctaacttat acctttaccc tggagagcaa tacagtacag atacacaaaa
     6901 ttttcatatc tttttagatt cttgccctga tagatggggt agattgttaa tgaaacgtcg
     6961 ggaggcagct ctagctagtc aagagaatcg taaacctaag ttactaatag aaagtgatta
     7021 ccttttaggc gtacacgata tgaatagaat gggggcttta cgttttaaaa ctgaattgaa
     7081 tggtccattt ttggacaata atactcgtct tgcagcacca ccactgtctt ccttaagaga
     7141 attagaattt gcagcaatac aacttgaaag cagtgataat gtggacgatc cggattattt
     7201 aaaatggctt catatgttga tatcaccagg gtcgtcacta ggcggagcta gaccaaaagc
     7261 ttcggtaata gatgaactaa atcaactatg gattgccaaa tttccaagtc ggtacgatga
     7321 ttatgatatt gctctttggg aatatttagc ttatcgactg gctattcaag ccaaaattga
     7381 aatggctact tgtagaattg aacgctttaa ccaagaacac catacttttt tgacacaaag
     7441 atttgatcga cattgtggaa aacgtcgcca ttttacgtca gcattaaccc agctgggtta
     7501 ttatgacgga gactatgagg caagctacct tgagattgct caatttttaa cagaaagtgg
     7561 ttcaaatact cgaattgact tggctcaact atggagaaga attgtattca atattgctat
     7621 ttcgaatact gatgatcatt tgcgtaacca cggatttatc tacgctcaag aggggtggat
     7681 attatctccc gcatacgatt taaacccagt accactatct caaggattac atttaaacat
     7741 aacagacagc gataaccgat tggattatca gctcgccttt gatgttgctg acttttttca
     7801 attatctaag caacaagccg tacagattta tgatgaagta ctgaaagaaa ttaataattg
     7861 gcaaaatgtc gcaaaagaaa ttggtattcc acgccaagag caagagcaga tgaaatttgc
     7921 atttaatgta tagtaattga cttgtggaac caatcatcgt agtctatgtt ctaaaaaagt
     7981 agcgttacct taataacgca atgagttgtt ggctcattgt caatctgata ttaatctagg
     8041 atgtaaaggc ctagcggtgg caggcaccag aaagacctga tactaatcta gggtataaag
     8101 acctagcggt ggcagacacc agaacaaacc aacatcttat aaaaccatta gtaacacttg
     8161 acttttttct caaccatatc cgcaaggaag cgtagcctta aaaacgcaaa tgtaggaaac
     8221 taatctaggc atatataatg cctagcagat ggcagacatc agaaaaacta acattta
//
LOCUS       DANLXK010000105         8241 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.106, whole genome shotgun sequence.
ACCESSION   DANLXK010000105 DANLXK010000000
VERSION     DANLXK010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8241
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            64..2451
                     /locus_tag="PXD88_002034"
     CDS             64..2451
                     /locus_tag="PXD88_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL6281577.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
     gene            complement(2618..3154)
                     /gene="hpt"
                     /locus_tag="PXD88_002035"
     CDS             complement(2618..3154)
                     /gene="hpt"
                     /locus_tag="PXD88_002035"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL6281578.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(3193..4542)
                     /gene="pmbA"
                     /locus_tag="PXD88_002036"
     CDS             complement(3193..4542)
                     /gene="pmbA"
                     /locus_tag="PXD88_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL6281579.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            4641..5171
                     /locus_tag="PXD88_002037"
     CDS             4641..5171
                     /locus_tag="PXD88_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL6281580.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            5177..5548
                     /locus_tag="PXD88_002038"
     CDS             5177..5548
                     /locus_tag="PXD88_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL6281581.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            5561..6274
                     /locus_tag="PXD88_002039"
     CDS             5561..6274
                     /locus_tag="PXD88_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL6281582.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            6277..6840
                     /locus_tag="PXD88_002040"
     CDS             6277..6840
                     /locus_tag="PXD88_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL6281583.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            6903..7343
                     /locus_tag="PXD88_002041"
     CDS             6903..7343
                     /locus_tag="PXD88_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL6281584.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(7347..8222)
                     /locus_tag="PXD88_002042"
     CDS             complement(7347..8222)
                     /locus_tag="PXD88_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6281585.1"
                     /translation="MMKTILIDEANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPA
                     EFEAGLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKE
                     LVIFLYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLE
                     KEGNLLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTL
                     QNEFQHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFG
                     ITPSQIKRDKAKGII"
BASE COUNT         2478 a         1647 c         1554 g         2562 t
ORIGIN      
        1 cataagattg aaccatataa tagctgttca gctaaaaatt agtctttgca ctttatcccc
       61 ctaatggaga aaatgatgag aaaaatcaat cagttaatca tatccccata ctttttccta
      121 agtattttat ctgcttccgc taactctgat ttttggaaaa gcgaccttaa ttttaatctc
      181 acaaatatta ccaagcgtgt cggagtcgat aactttacca ctccagtagc tggcgagcct
      241 tgggctggta ttggtccaaa tggtgaagct gcaggtactg cgccattata ttatagccgt
      301 attccagcta tgcaagttac cgaagataac aaattagttg ttatgtttga tttacgctgg
      361 aatcgtgcgt atgaccaaga tcgtattgat cctggtattg cgatttcttc cgatggtggc
      421 catacttgga cgaagaaaac cgcttggtct tttgatagaa ctaatcaccc agcacgccgt
      481 tcaatggatc caacgctatt acataatcct attgataata gtttatatgt aatgcacgga
      541 acttggtcta tgtcggatca acaatggtat ggtgggcgtg ttcctcactt taatagtggc
      601 agctgggcag ctaccattta taaatctact gatggtggtt taaattggga gaaaaatact
      661 gagtttagta aattcagcaa tttagacgta ttttctaaag tcaccaaaaa tggaaaacct
      721 accttaggct ttttaggcgg ggtcggatct ggaattgtaa tgcaagatgg tacgttggtt
      781 ttcccaattc aaaccgcaca tcaaaatggt attgcgacca ctattatgta ttctaaggat
      841 aatgggaaaa cttgggaaat gccagaaatt gacaacccag ttgcaccgaa ccaaagttct
      901 ttagaaaata tggtgtttga actcgaaccg ggtaagctag tgatgactgg acgaggaaac
      961 agtcgctggg catactcttc tactgatatg ggtaagacct gggaattatt tactccaact
     1021 aatggattat taccaactag ctcacaacca actcaaggct cttctatcta tgtaacacta
     1081 ccaaatggtc gaaaagtgct actaatctct aaaccagatg gaaagaatga tgggtggaaa
     1141 aggggtgata ttacactttg gatgctagat gcaaaagatc catcgcacaa acacaaggtg
     1201 catattattc gtccaggttc aggtaatgcc gctggtgctg gttattcctc tttagcctat
     1261 aaagaaggga atttatttgt tgcttttgaa aacgatggtg atatttcagt aaaaaattta
     1321 actgaacata ttgctgaaat ggaagcaaaa gctatcgaat ggggattacc agatgaactt
     1381 actcctgctt tggataaaat caatgcactg ccttatctca ataaagctca aaaagagacg
     1441 ctagtcgaaa aaatgcgtcg tgctaatgat actgcgattg cacaatcttt tgtgattaac
     1501 aaagaaatgt ataatctgaa aaacaatagt gatgagctgg ataaattggc aaaaaatatt
     1561 actaaagcac tgccgtctca acagaatatt tatcaaagag ccttagccta tgtgaataaa
     1621 gtcaccaata cagcggatac cacttattta aattataatg gtattatgga tacctatgct
     1681 aatttatatg aaagctattt ggctttaaat actaaattag acttcactcg ctacatccaa
     1741 aaagcgagaa agttcaatga atataacact gatattttat atcgtagctt tgataatttc
     1801 tttgcccatt acgacacagg tgtaaaacac aataatctat ccttaggctt gaatacaaaa
     1861 ttaagtgaga atttacgtgg tggcttattc tttgaataca gtaataaaaa tcgtaatagc
     1921 gtacaaattg gtgcaagagc taaatatgaa atggataatc accaactttc tggcttctta
     1981 cgctatcgtg gcgtaaaaca taaagatatg ctagcacgta ataacagtgt tgatggctac
     2041 ctaaattatg cttatcgtat tcaattagat gataaattaa gcattagccc atcagttggt
     2101 gcttacgttt cacgttcttc tcgctcatta atagatgaag atcttgcgat taatagccgc
     2161 acggtctatg caagtgatgt aggattgaat atccattata agctaaatga tattgatgct
     2221 tatattcgtc caagtatagg ctttgtcaat ggtgatataa ctttatctca atctaatgat
     2281 atgacaaaca catacaaaat aaaggataaa agtaacgtgt attctgtcac gacagggttg
     2341 aaaaaacgct ttgcaaatgg tgtggcatta ggggctgatt tcaaattaca tcgttatggt
     2401 tctcaaacta ctgaaagtaa tttcggtcta aatgtaagtt ataactggta ataccgtaaa
     2461 ctgattacga tttaaaagtt agactagccc aagactgagt tctatattcc atagagctca
     2521 gtcttttaat ttttctttct cgataagaat attttatatt tcaaccttaa tcgagaatgt
     2581 aattagtcgt gaaaatctaa gtagtgattg agttttttta ttcaatcact actttagcaa
     2641 tataatctaa atgacgatat ttttgggcat aatcaatccc ataacccacc acaaattcat
     2701 cggggatctc aaatcccacc cattttacgg gcacatcaac ttcgcggcgg caaggtttat
     2761 ctaataaagt acaaatagca agtgaatttg gctcacgtaa cttgagaatc tcccctacct
     2821 tgcttaaggt gaagccagta tcaataatat cttctacaat caatacatct ttaccttgaa
     2881 tttcgccatc taaatctttt agaattttga catcacggct ggattccgtg ctgctgccat
     2941 agcttgatgc ggttagaaaa tccacttcta caggtaactc tagctttctt actaaatctg
     3001 ccataaacat aaacgagcct cgcaataaac caaccactac aaggttttgg cactgttttt
     3061 ggtgatagtg ttgattgatt tcttttgcta attcattgat tcggtttaat acttcttctt
     3121 ttgaatgtag cgtttcgata tgatgttttt ccattgattt ctccaaataa aattgattac
     3181 aagcggccgt ttttactcgc ctgaaaccat cattttttct aataagattg aacctgtttg
     3241 gatatttgag cggtgttcaa tatcatcgcc taccgccact aaatttttat acatatcttg
     3301 cagttgccct gcaatggtaa tttccgctac agggtattga atttcaccgt tttctaccca
     3361 aaatcctgct gcacctcgag agtattcccc tgttacgcta ttaatcgcag aacctagcat
     3421 ttccgttact aataatcctg ttcccatttc cttaagtaac gtatttaaac caccttgacg
     3481 atttggttta actaaccagt tatgaatacc acctgcgtgt cctgtacttt ttaaccccat
     3541 tttacgccct gaatagctag tcattaaata cgtttgtagc acgccatcag taataatttc
     3601 acggttttgg gtaattacac cttcactatc aaacgcagaa gaggctaatt gacgcaacaa
     3661 atgcggacgc tctgaaatcg caaaccattc aggcagaatc tgttcgccta atttatctaa
     3721 taagaaactt gatttgcggt ataatgcacc gccactaata gctccggcca aatgccccac
     3781 taaaccggtt gccacatcgt tatagaaaat cacagacatt tcgccggtct taattcgttg
     3841 cggattcaat ctatctaccg ctttaattgc agcttgctcc cctacccatt tcggtgcttg
     3901 taatttatca aactcacgga aaatggtgta ttcataatca cgctcaagct gatcttcata
     3961 agctgaaatc acgctacaag agagtgaata tcggctcgac aggtaactct gcaacattcc
     4021 gtgcgtattg ccataaacac gcacgccact gtgagaattg aaagttgccc cgtcactatt
     4081 cacaattttt tcgtctgcat ttaaggcata atgctccgct tcaatcgcca attcgactgc
     4141 ttgatcaact gaaatatccg cttggtggta caattccaaa tcttctgcct caaaggcaag
     4201 caattcttta tcagcaagcc cggtacaagc atcttctgag gtatattttg caatcgcaag
     4261 agctgcttca accgtttttt gaatcgactc tggctgaaga tcggaggtgg aagcattacc
     4321 tttgcgtttg cctaaataaa ccgaaatacc gagagaacca tcgttattga actcgatgtt
     4381 ttcaacttgc tctaaacggc ttgaaaccga aagcccggca actttagtca cgcctacttc
     4441 cgcctctgcc ccagcctgtt ttgcaaaatt taaggcaaat tcgaccgctt gtcgtagctc
     4501 ctgttcttgt tgtaacaagg tttgtttatc tgtaattgac attttgttcc attgattgat
     4561 tgcattgatg aatatattct aactcaaatt tctgttagaa tacggcattt tttagagttt
     4621 atgtaatgaa aggataaaga atggctaaaa aacggagcaa aaacgaaatt gactggacag
     4681 atgaggaaga agaaatcatc tgggtcagca aaagtgagat aaaacgagat tctgaacact
     4741 taaaaaaaat tggggctgaa ttgatcgaat tgaccccaca aaatttggaa aaaattccac
     4801 tagacgatga tttaaaagag gcaattcgcc aagctcaagg ctttaaaatg gaggctcgcc
     4861 gccgtcaaat tcaatttatc ggcaaattat tacgcaaccg tgaccaggag ccgattcaag
     4921 aagccttaga taaagtgaaa aatcgccata atcagcaaca agccctatta cataaattgg
     4981 aattagtgcg taatcaactg attgcaatgg gcgatgcatc attagataat ttattgacgg
     5041 aatatcctca attagaccgc caacatttgc gtaatttaat tcgtggggca attaaagagc
     5101 gtgaagccaa taaaccggca aaaaattacc gtgaaattta tcaatattta aaaactgaaa
     5161 tcgtggagtg attattatgg agtacctatc aaccattctt aaagctcata tcggcttagc
     5221 ttatattagt ttaattttat tattaacccg tggattttta tcgtcaaaga tggtggattg
     5281 gcgacaatat aaaattttgc gcattgcccc acacgcagtt gataccttct tacttatcac
     5341 cggtattgct gctgtcgcta ttttcttagc ttatgatttt ttcaccttag cacaattcag
     5401 ttggttgcta ccaaagttac tcttcttagt actttatatt gtatttgcga caaaagcgtt
     5461 caaaaaagga caaccgtttt cgctcaaatt ttatctgtta gccgtagtct cattcttatt
     5521 aatgatgcta actgccactt ttcactaaat aagggaaact atgatcgggc cttttgtgaa
     5581 tgccggtgca attattttag ggggcgtgct gggtgcttgt ttagggagtc acctgcctga
     5641 acgtattcgc actacgttgc cgctggtatt cggcttatgc tgtttcggct taggtatgat
     5701 gctgactgcc tcagtaaaat atatgtctgc ggttgcctta gcattgattt taggcacgat
     5761 catcggtgaa ctgatttatt tagaaaacag aatcggtaaa gttgccggtt tagctcgtgg
     5821 tttaattgac cgcctattcc caccggtgca tagtctttcc caagaagagt ttttagagaa
     5881 atttattgct ctgcttgtac tgttttgtgt gagcggtacc ggcatttttg gtgcaataaa
     5941 ggaaggaatg acaggcgatc caagtattct ttacattaaa tcgattctag atttcttcac
     6001 cgcaatgatt ttcgctgctt cgttaggcta tgccattgcg gcgattgcag tgccgttgat
     6061 tattgtgcaa gggattttaa ttctactggc aaccgtgatt atgcctttaa ccactgccaa
     6121 tatgatggca gatttctccg caaccggcgg tttactgcta tttgcaaccg gctttcgcat
     6181 ttgtggaatt aaaaactttc cggtcgcaaa tatgctacca gcactactcc ttgcgatgcc
     6241 gatgtcttat ttctgggaat ggttggtaca ttaatgatga aaaaacgtat tattgtcggc
     6301 attagtgggg caagtggttt tcaatatggc tataaagtgc ttgaactgct gaaaccgttt
     6361 tcagaaattg aaacccacct tgtaatcagc aaaggagctg aactcactcg tactctcgaa
     6421 acggattata cccgagaagc tcttcatgat ttagctgatc aaatacattc gctaaacaat
     6481 gtcggagcaa gcattgccag tggttcattt aaaaccgaag gtatggtcat cgccccgtgt
     6541 tctatgcgaa cccttgccgc tattgccaac ggtttgagcg ataatttgct gacccgtgcg
     6601 gcagatgtgg tgttgaaaga acggcgtaaa ttggtattaa tggtgagaga agctccgctc
     6661 aaccttgctc atattgacaa tatgcgaaaa gtcacagaaa tgggcggcat tattttccca
     6721 cccattccgg cgttttacca aaagccaacc agccttgacg agatggtcac ccacagcgta
     6781 agccatgccc tttccctgtt ggatattgac attccaaata ccccacattg gggagaataa
     6841 ttcggcttat cttttgcttt ttgaaatgct agaatacctg ataaaaacta tcaggtattt
     6901 ttatgcacaa tccaatcccg acccatattt tagatttcat tcaaactaac cacgttgtca
     6961 atattgcagc tcataccgaa caggattttt gggcagcaaa ttgcttttat gcctttgacc
     7021 aagaaaatgt tcgcttgatt atcttaaccg ccaagaaaac cagacacgct ggcttgatgc
     7081 ttgaaaaccc acatattgtc ggcacaattt gtgggcaaat tgagaagatc aacgaaattg
     7141 aaggtgtcca attctccgct accgccgaat gtttagaaga taaacaagcc gaaaaagccg
     7201 ctttgcaaat ttattaccaa aaacacccgc ttgcacggct taagcctagc gatgtttggg
     7261 tgttatcatt caataccatc aagcacaccg gtaataaact tatgtttgcg aaaaagacga
     7321 tttgggagag aaatataatt tgaagctcaa ataatgcctt tagccttatc ccgtttgatt
     7381 tggcttggtg ttatcccaaa agttcgctta aatgccgttg aaaaattctc cgaattggca
     7441 tatccggcaa attcagctgc ttgtgtaata ctctgccctt gtaatagtaa tttataggct
     7501 tgttctaatt tagaacgcct taaatacgca aaaatagagg ttttgtggta atgctgaaat
     7561 tcattttgta atgtggtcac attggtatgg aaatatattg caatctgctt caaactccag
     7621 ccgtcaaatt taccgctctc aagcaattct gttaactgtt gcacccgatc tttttttaac
     7681 cggggagcct gtgtcagctg agaaaaagca cttgctaata aagctaatag attaccttct
     7741 ttctcaagta acccaaatgg ttgcatttcc tgctctgaca caatatcgtg aataagtttt
     7801 aacatactct gagtcaaaat aatttggtgg gcttttaaat gctgtttaaa gtgatgatag
     7861 cttgccaaat ttaactggct ttctattagc catttagggt agagaaagat aacaagctct
     7921 ttttgaagtt gccctttcct aaaaatttta cgccccattt cagctctatt tagcggtaaa
     7981 aatgcggctt gaggttttaa acttgcatct aattcaaata cttccgaatt aaaatcaatt
     8041 tccgatcgac cactcaacaa tataaccaat cttagtccgg cttcaaattc cgcaggttct
     8101 tgctctacgg tttcagtaac tgaaatctct gtatatttca gcataagatc tgaacgtagt
     8161 cggtataaat gtgaaaaacc ttttatttgg ttagcttcat caatcaagat tgttttcatc
     8221 attaaaaact ttttttcgca t
//
LOCUS       DANLXK010000106         8088 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.107, whole genome shotgun sequence.
ACCESSION   DANLXK010000106 DANLXK010000000
VERSION     DANLXK010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8088
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            130..777
                     /locus_tag="PXD88_002043"
     CDS             130..777
                     /locus_tag="PXD88_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL6281586.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(910..2286)
                     /gene="trkA"
                     /locus_tag="PXD88_002044"
     CDS             complement(910..2286)
                     /gene="trkA"
                     /locus_tag="PXD88_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL6281587.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(2286..3617)
                     /gene="rsmB"
                     /locus_tag="PXD88_002045"
     CDS             complement(2286..3617)
                     /gene="rsmB"
                     /locus_tag="PXD88_002045"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL6281588.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(3669..4094)
                     /locus_tag="PXD88_002046"
     CDS             complement(3669..4094)
                     /locus_tag="PXD88_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL6281589.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(4187..6835)
                     /locus_tag="PXD88_002047"
     CDS             complement(4187..6835)
                     /locus_tag="PXD88_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL6281590.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(7037..7999)
                     /locus_tag="PXD88_002048"
     CDS             complement(7037..7999)
                     /locus_tag="PXD88_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL6281591.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
BASE COUNT         2333 a         1881 c         1579 g         2295 t
ORIGIN      
        1 ctttttggct aattaatttg caatttaaat taattgagtg cagaatgcca ttagcctttt
       61 ttgaaatcac attccataaa atggcttgat taacacaaca caattatcac tcaaattagg
      121 attttcatta tgagtatttt ccaacaaacc aatccaaacc gccgtcgtta tgggctagct
      181 gtatttatcg ggattattgc cggtattatt tcagcattcg taaaatgggg ggcagaacat
      241 cctttcccac ctcgtagccc tatcgatctg tttaccgctg cttgcccgca acctgtgtta
      301 gatgcaatga atgccgcagc agaccaagtg gctgccaaaa ccatcgcatt acaagaatgt
      361 tcacgtgcat ttttaaaccc accacacgtt ttcttacgtg attatattgg tatcgatcca
      421 actgaagcag catttacctt tgctgaccac gcgttcaact ggattggtgt cacccatatg
      481 attttctcgt tagtctttgc gattggttac tgcattgtgg cggaaatctt cccaaaaatt
      541 aaattctggc aaggtatcgg tgccggtatc atcgctaata tttgtgttca ctacatcacc
      601 ttcccggcat taggtttaac accaccggtt gctgaatggc cgttatatga acacatttct
      661 gaattagttg gtcatatttt ctggttctgg accattgagg tgattcgtcg cgatttacgt
      721 aaccgtatta cgcgtgaacc tgatgccgaa gtgccgttag atcaaccgtt ccgttaattt
      781 aaaattagct cgatttatac aaaagccgca atcacgttgc ggctttctta ttttacaagc
      841 ggtcaaattt tcatgaaaat ttaccaaaca aaaagcacat tgtttcatgt agcaatgcgg
      901 agcttggctt tataagaaaa atacaccaag ttggaacagt ttttcaattt catcgatctg
      961 tttcttatcg ttcacaaaaa taatcacacg gtcattttct gcaatcatgg tggatttgtg
     1021 ggcgataata acttcttcgc ctcgcaccac cgccccaaca attgcccctt gcggtagttt
     1081 taattcacgg atttgtcgtc caaccacttt tgaagtggtt gcatcgccgt gagcgataat
     1141 ttctaccgct cctgcaaccc caagtttgag tgaagaaact tgtaaaatat cgccttttct
     1201 aacgtaacta gcgagagcag aaatagtagc ttgttgtggg gaaatggcaa tatcaatagt
     1261 gccaccttga atcaggtgta aataggcagg gcgttgcact aaaataatca cttttttcgc
     1321 cccaagccgt tttgccagca gggcggacat aatattcgct tcatcatcac tggtgacggc
     1381 aaggaataaa tcaatattct caatatgctc ctcaaacagc aactcttcat cggaggcatc
     1441 accggtaagc accatcgttt tagatagttt ttctgctaat ttttcggctc gaaccggatt
     1501 gcgttcgata atttttaccc gatactgatc ttctaaatcc cgagctaacg aagagccgat
     1561 gctccctcca ccgacaatca taatccgctt atgtgggcga tcaagccgtt gtagttcact
     1621 cattactgct cgaatatgtt gggttgcaca gatgaaaaag acttcatcac ctgcctcaat
     1681 aatagttgaa ccttgtggca caatcgcttt gtcttggcgg aaaattgcca cgacccgagc
     1741 atcaatatgc ggtaaatgat cacgcagggc tgaaatcggg taaccgacca aaggcccacc
     1801 gtaataggct tttacattca cgatactgac taactcatca gcaaaatgag taatttgcaa
     1861 cgcccccgga tagtgaataa ggcgtaaaat atcttctttg actaaaattt caggggcaat
     1921 aatatggtca ataggcaata catcatcatt aaacaaccgc tctcgttctc tcacataatc
     1981 agcactgcga atacgggcaa ttttggtcgg cacattaaat aaagtgtaag caatttggca
     2041 agcgatcata ttcacttcat cactattagt tacagcaact aatagatcag catcacctgc
     2101 accggcatca cgcaaggttt gaggtgaagc atattcgccc cgaatcacct gtaaatcgtg
     2161 tttatctttg agcttgtcta aacgagttgg gtcattatcc accaagacaa tatcattgtc
     2221 ttcactcacc aaattttctg ccagcgtaga accaacttgt cctgccccta aaataattac
     2281 tttcattact ctgctacttt ttgtagtttt gcgtagaaga aaccatcacc accgtttggt
     2341 tgtgggaaga actgtttttc taacactttt tcgccgttaa aatcgatttc aagttgtttt
     2401 gcattcggtg tatcttgtaa aaaccgttga atttgctcgc tattttcttg cggtaacacc
     2461 gagcaagtgg catataacaa aatgccgttt ggctttaacc tttgccataa cgccttgaga
     2521 atctcaccct gtaatgtggc taattctgca atatcaccct ctttacgcaa ccatttaata
     2581 tcagggtggc ggcgaatgac tccggttgcg gaacaagggg catcaagtaa aatgcggtca
     2641 aacagcacac cctcttcaag ccattcctca ggtttggaag catcgccaca aattacctgt
     2701 gcaatctgcc ccagtcggac taagttttca cgcactcggc ttaaacggct ctcttcaata
     2761 tccaacgcca taacctttgc tttcggtgct ttttctaaaa tatgggtagt tttgccaccc
     2821 ggtgcggcac aggcatctaa aacggtttca ccattttctg ccccgagcaa ctccgctgac
     2881 cattgtgcgt gagcatcttg cacggttgcc caaccttgct cgaaatgtgg cagttggttc
     2941 acatttaccg ctctctccag caataaagca cactttggca cgcaagcggt cggattttct
     3001 gaattttttg caaattcagg ctcaaccagc tcgctaatca acgccgcata atcattggtc
     3061 ttgatatgtt gttgattgac tcgaatccac attggtgggc gttggttgtt tgcttcaaca
     3121 atttctcgcc agttcggata ggctttttta agtttattga ccaaccattc agggtggagc
     3181 gtttgccaat gtttatctac cttcgctaag atttcttctt gctctcgcag aaaacggcgt
     3241 agcacaccgt tagtcaaggc tcggaagcta tccagtttta gcgttttagt tgcattcact
     3301 acctcatcaa ccgcagcgtg tgccggcact cgcatataaa gcagttggta taaacccact
     3361 aacagtaagc aatgcaccaa acgggttttg cctttcagcg gtttttcaac taataatttg
     3421 atgatcgatt ccaagcgagg cagcacacgg cacactccga aggtgatttc ttgcactaag
     3481 ggtaaatctt ttggttcaag ctgtttttga gcgtcaggaa tcaaggtgga aagtgattta
     3541 ccttgatcta acacctgtaa aataatggtt gcacttattg ctctagaaga aagtgctttg
     3601 aacgattgtt ttttcataaa taaaaatgcc attccgacag aatggcacta ttgtaactga
     3661 atgcgggatt atcttaaaac taaaattggc ttggtggtgt tgcgagccac tttaaccgta
     3721 ttagagctta agcccttcgc atttggtttg ctgcttgcca gcatcataat taaatccacc
     3781 gacttttcat cggcaatacg gcaaatttct tcataaatcg taccatacgc cacaatgtgc
     3841 tgcacttttg aaccttcagg aaaatggttt ttggtaaatt cgtgcaattt ttggtttgct
     3901 tcagccacca cttctttatc gaaatttttc ggcaagaatg cagaaattaa gctgttatcc
     3961 accggctcaa taatagacac aacccgataa accgcattcg gattttttgc cgtcatttgt
     4021 aatgccgtat ctaccacata tttagcactt tttaggtcgg ctaaatcaat cgcaataagt
     4081 aatttgttat acatatttat tccgtagggg caggtcctgt gcctgcccga atattaacta
     4141 aaatagcgga cgggcacagg acccgtccct acatagcata taaatactat gcaataacac
     4201 actgtttttt cactctacgg cgttggtttg ccacaatacc aaataccaac aatagagcag
     4261 gaatgaagat ccaatcttta gaaggagcat cttgcggtac ggcaatgtag tgaatggttt
     4321 gatcccagtt taagcctgct ttagctgccg gagaatccat ttctaccata tcaatcacca
     4381 cttttggtgt ttctacgcca tcaactttga ttttttcatc ggtttgaatt agcgttaagc
     4441 ctaagttttt caaacgctct tcgccggttg ctccttccgg tacaggtaat tgagcgtaga
     4501 actcaatttc tttaccgtaa gggtttaatc cctctacttt taaagtaaca ttttgaccta
     4561 ctttgcttgc aagcaactgt tcttcaaact gcaccggctc gatatgacgt tcagacggat
     4621 aaattctgtc cataaagaag cccggacgga acaaggcgaa agcggctaca accagcaacg
     4681 ccgtttccca ccatttgttt ttagtcacaa tatattgcat tgtagcagag gtaaaggcga
     4741 gaaccccaac agttgcggta ataaacacaa cccagccgtg ccccggataa cgcagatcaa
     4801 ttaataataa atcggtatta aaaataaata agaacggtaa aatgacggtt cttaaactat
     4861 atttaaatgc caccataccg gtattaatcg ggctaccgcc tgaaattgct gccgcagcga
     4921 acgaggctaa accaacaggt ggagtcacat ctgccataat cccaaaatag aatacgaata
     4981 aatgcaccgc aatcaacggc acgattaacc cgttttgacg accgacttcc atgataaccg
     5041 ttgccattaa tgatgacacc acaatgtagt ttgcagttgt cggtaagccc attcccaaaa
     5101 ttaagctgaa tacggctacc aagatcaaca ttagcacaat gttgcccatt gataggagtt
     5161 caatcacact tgaaagctga accccaaagc ccgttagtgc cacaacgccg acaataatcc
     5221 ctgctgttgc ggtagcgagg gcgataccgg tcatattacg accgccagcc tcaaggctat
     5281 ctaccacatc tcgaacacct tgtttgataa tctctttggt tacgctctct ttacggaaga
     5341 aattcagtaa cgggcgttgg gttaattgaa taaaaattaa ggtaatggtt ccccagaatg
     5401 cggataagcc cggcgaaagc atttccacca ttaagcacca aagtagcaca accacaggaa
     5461 taaggtaatg taaacctgca tttacggttg gttttctttt tggtagagaa acaatttctg
     5521 agtttggatc gtccgcttct aaatcagggt agcttgccac acggcgaata gccagtagat
     5581 accataagcc taagaaagca cagacaatca taaacgcata atcttctgcc acatcacgaa
     5641 tccaacctaa gccgtagtaa acgccaatcg ctaatcctac gatcactaaa attgaagcta
     5701 cggttcttag caagaagact aaaatcgggc ttggctcttc ggctcttggt aagccttgta
     5761 aattcatctt acaagcttct aaatgcacga tatacaccaa cgcaatatac gaaattaacg
     5821 caggtaagaa ggcgtgagta atcagctggc tatacggcat attcacatat tcgatcatca
     5881 agaacgctgc agcccccatt accggtggca taatttgacc gtttactgat gaggcaactt
     5941 ccaccgcacc ggctttttct ttggtaaagc cgacccgttt catcattgga atagtgaatg
     6001 tacctgtcgt cacgacgttt gcaatcgaag agcctgaaat caagccggtt aaagcggaag
     6061 aaaccaccgc cgcttttgcc ggaccaccac gcaaatgccc taaataggca aaggcggttt
     6121 taataaagta gttacctgct cctgctttat cgagcaacgc cccaaataat acgaacagga
     6181 acacatattt ggtcgaaacc ccaagggcta caccaaacac gccttcagtg gtaatccatt
     6241 gttggttgat aatttgagaa agcgaacctg agcggtggct tacaatccaa tctgccggga
     6301 aatattgccc gaagaagtta tagatcagga atacaatcgc aataatcaca agcggtaagc
     6361 caagactacg gcgggtcgct tccagcacca ataaaatccc taaacagccg gcgataatat
     6421 cttgcgtatt tggcgctcca aaacgtttca ccaaaccttc atagaagaaa atataataca
     6481 acgctaaccc agctcctacg atggcaaaca cccaatctat tttaggaata tgatgtttag
     6541 gcgagctggc aaaagcaggg taagatagga acgccaagaa cattgcaaag gctaagtgga
     6601 tagaacgggc tttggtgtcg tccaccacca cattcaaatt aatgcctgcg tgagtaagcc
     6661 attcttggaa tacaaacggc aatggagaag cataataaat ttggaacaca gaccaaagaa
     6721 tggcgacata cacaatggct tttttcgcaa gaccggacgg ggttcgcccc ccactgtcat
     6781 tggaggcaac catatcttgt aggtcatcgt aatcaacctt agattcaact gacataaaga
     6841 ctcctcaaaa cgcaagcggt cattttctta ttaaatttta caaatttcct caaaaaacaa
     6901 ccgcttgctc gtgaaaacac tgttgataag ttatcaatta aaggtgaaaa tcgataactt
     6961 atcaacagtt tcaaaaaagc aaaaaaccag cacgctaaaa aacgtgctga ttgaatcaaa
     7021 ttacagaaag gaaatattac ttaatccaac ctttctcttt atagtaacga attgcacctt
     7081 cgtgtaacgg agcagaaagg gcgtttttga tcatctcttc ttgttttaag tgttcaaacg
     7141 ccggatgtaa acgtttgaaa cggtcgaagt tatcaaatac cgctttggtt acattgtaca
     7201 ctttatctgc atccacatcg gcagaagtca ctaacgttgc atatacaccg aaggtttctg
     7261 tcggctcatc cgaaccttta tataaaccgc ccggaatcgt agctttggca taatatgagt
     7321 gatctgccac taatttatca atttcagggc cggttaccgg cactaatttc gcatcgcaag
     7381 aagcggctgc ttcttttaac gcaccattcg ggtgacctac gttataagtg atggcatcta
     7441 agttgttatc acacattaca gatgccattt ctgccggttt caattcagaa gccactttga
     7501 aatctttatc cgtccagcct tttgccgcta aaatcacgtt cattgttgca cgagtaccgg
     7561 aacccgggtc gcccacgttt acacgttttg cttttaaatc atcgaacgat ttaatgcctg
     7621 aatcggtacg agccattact gtaaacggtt ccgggtgaag cgagaaaatg gcacgaattt
     7681 tatcgttttt cttaccttca aatgagcttg agccgttata ggcgtggtat tgccagtctg
     7741 attgtgcaat ccccatatcc atttcttttg ctgcaatcgc atttaagttt gcaaccgatg
     7801 cccctgttga aggagcgtta cattttaaac ctgtttttgc tgaatcacgg tttactaatt
     7861 ggcaaataga ttgacccaca acataataaa caccggtttg accgcctgtt ccgatagtca
     7921 caaatgtttc agccgcttga acagatgctg ttcccatcac aaggcttgca aggaaagaaa
     7981 gtttgactaa ttttttcatt tttaactcct aaaattaagg atcagaaaac aaagatttat
     8041 tgttttgagc cactgctcac actacaagag atacaaaact tctttgag
//
LOCUS       DANLXK010000107         7923 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.108, whole genome shotgun sequence.
ACCESSION   DANLXK010000107 DANLXK010000000
VERSION     DANLXK010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7923
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            44..3115
                     /gene="fdnG"
                     /locus_tag="PXD88_002049"
     CDS             44..3115
                     /gene="fdnG"
                     /locus_tag="PXD88_002049"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:629..631,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL6281592.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3118..4032
                     /gene="fdxH"
                     /locus_tag="PXD88_002050"
     CDS             3118..4032
                     /gene="fdxH"
                     /locus_tag="PXD88_002050"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL6281593.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4025..4702
                     /locus_tag="PXD88_002051"
     CDS             4025..4702
                     /locus_tag="PXD88_002051"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL6281594.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4758..5675
                     /gene="fdhE"
                     /locus_tag="PXD88_002052"
     CDS             4758..5675
                     /gene="fdhE"
                     /locus_tag="PXD88_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL6281595.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5745..6131)
                     /locus_tag="PXD88_002053"
     CDS             complement(5745..6131)
                     /locus_tag="PXD88_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281596.1"
                     /translation="MLRNFMIMLHFIYGFAMKNAFSFFVISLFLTMNSISYASNPIPS
                     NKEKLNGVKKQQDKPKFRISERKVLKNKEKDEEVSNFSMEELRVGAQRPLDDSVIQYF
                     KSQCRYAFMSDREIIANRCEVKKIAD"
     gene            complement(6142..7512)
                     /gene="gorA"
                     /locus_tag="PXD88_002054"
     CDS             complement(6142..7512)
                     /gene="gorA"
                     /locus_tag="PXD88_002054"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL6281597.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
     gene            complement(7589..>7923)
                     /locus_tag="PXD88_002055"
     CDS             complement(7589..>7923)
                     /locus_tag="PXD88_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL6281598.1"
                     /translation="LNLIDVVMIANLLVMVIVGGYETFVSRLKVDDHPDQPEWLDHVN
                     ATILKVKLSMAIISISSIHLLQTFINASNLDEKQMMWQVVIHLAFIVSALAMAYIDKM
                     LNSGHMKH"
BASE COUNT         2384 a         1734 c         1651 g         2154 t
ORIGIN      
        1 caaattttgt tttatttctc acattatgtg atttggagtg attatgcaga tctcaagacg
       61 taagttcttc aaggtctgtg caggtggtat ggcgggaact tctgctgcaa tgttgggttt
      121 tgctccagca acagcattag ctgcaccgcg tgagtataag ctcttaagag caaaagaaac
      181 tcgacaaacc tgtacttact gcgcggtagg ctgtggcatg attatgtaca gcttaggcgg
      241 cgaagcaatg aacagcaaag gaaagttaat tcatattgag ggtgattctg accatccagt
      301 aagccgtggg gcgttatgtc cgaaaggtgc aggggcgttg gactatgtta atagtgaccg
      361 ccgtgtgcat tatccggaag tgcgtgaagc cggttcaagt gagtggaaac gcatttcttg
      421 gcacgaggca attgaacgta ttgcccgcca tatgaaaaat gaccgtgatg agaacttcgt
      481 cacccacaat gaagcagggc tggaagtaaa ccgttggatg acggcaggtt tcttggcagg
      541 ctcggcgtgt agtaacgaaa ccggtatcgt cacccagaag tttatccgct ctctcggtat
      601 gatttttacc gacaaccaag cgagtatctg acacggacca acggtagcaa gtcttgctcc
      661 atcatttggt cgcggtgcga tgaccaacca ctgggttgat attaaaaact ccgatttagt
      721 gatcgttatg ggcggtaacg cagccgaagc tcaccctgtg ggtttccgtt gggcagttga
      781 agcgaaaaaa cagaacggtg cgaagttaat ggtggtagat ccacgcttta accgtagtgc
      841 tgcggtggcg gatatttata taccattgcg tccgggtacg gacattgcgt tcttgttagg
      901 tgcggtaaac tacctgctta aaaacgacaa aattcaacac gagtatgtga agcattacac
      961 caatgccaca ttcttactca acgaagggtt taaattcgaa gacgggcttt tcaccggcta
     1021 cgatgaagcc actcgtacct ataaagacaa atccacttgg gcttatcagt tagatgaaca
     1081 gggtcagccg aaacgggata tgacaatgca agatccacgt tgtgtgatca atatgctcaa
     1141 agaccacgtt tcccgctata cgcctgaaat ggtagaacgc attaccggta cgccacaaaa
     1201 agatttcctg attttctgtg aagagattgc gaaaacctca gcgccggata aagccgccac
     1261 cttcctctat gccttaggtt ggacacaaca caccgtgggc gcacaaaaca ttcgctcaat
     1321 ggcgatcatt cagttgctgt gcggtaacat tggtgtctcc ggcggtgggg taaacgcact
     1381 gcgtggtcac tctaatgtac aagggattac cgacctaggc ttgttcccac atatgttgcc
     1441 gggctatatc cgcctgccaa ccgaagcgga cgcaacctta gaaagctact taaatgcgat
     1501 tgcaccgaaa accttagtgg cagggcaagt aaactacggg caaaacaacc cgaaattcgc
     1561 tgtgagtatg ctcaaaacct tctacggcga taaggcaacc aaagagaacg agttcggcta
     1621 tcactattta ccgaaatacc cgaaaggcgg tacagatcac ttccgcttta tcgaacagat
     1681 gtatcaaggc aaagtgaacg gctatttctg ccaaggtatg aacccgattg cctcttaccc
     1741 taactcgcag aagttaatta aagcgttgag caatttgaaa tatttagtca tttttgaccc
     1801 gcttattacc gatacttccg agttctggaa aaatcacggt gagttcaaca atgtgaaccc
     1861 gtctgaaatt caaaccgaag tgttccgctt gccgaccact tgctttgcgg aagaagatgg
     1921 ttcaattgcg aactccggtc gctggttaca atggcactgg aaagcagcag acgcaccaca
     1981 cgaggcaaaa ccggacgtgg atattctgtc tgaaatccgt gccgaactga tccaccttta
     2041 tcataaagaa ggcggaaaag caccgcttga accgttagaa gcgatgacgt ggaactatat
     2101 gaacccgtta gaaccgaagc cggaagagat cgccaaagag aacaacggtt atgcattgga
     2161 agatctgaaa gatgcagacg gcaacatcat cgtgaaaaaa ggcgaactat tatccagctt
     2221 tacacaaatg cgtgatgacg gtacaacctc cggtggttgt tggatctact gcggtcaatg
     2281 gactccgaaa ggtaaccaaa tggcgaaccg tgataactcc gacccatcag gcttaggtaa
     2341 caccttaggc tgggcattct cgtggccggt aaaccgccgt attctataca accgtgcatc
     2401 ggcagattta agcggtaaac cgtggaaccc gaaacgccag ctagttaaat ggaacggtaa
     2461 aaactggaac tatgtggacg ttgccgatta cggtacagca ccaccaaata gccctgtgac
     2521 accatttatt atgcaaccgg aaggggtatc cggcttgttc gtgcgtgaac gtatgcaaga
     2581 cggtccattc cctgagcatt atgaaccgtt tgaaacgcca atcggcacga acccgttaca
     2641 cccgaatgta atcagcagtc cggtggcacg cattctgccg agcgataaag aggatttagg
     2701 caccagcgat gagttcccat atgtcggtac aacttaccgc ttaaccgaac acttccacta
     2761 ctggacgaaa aatgccctga ttaacgtcat tgctcaaccg gagcaattcg tggaaatcgg
     2821 cgagaaactt gccgaagaga aaggcattaa aaatggcgac aaagtacgtg tttggtctaa
     2881 acgtggcgaa attaaagccg ttgccgtggt gactaaacgt atccgttcat tggtctctga
     2941 cggcaaacca atccacacta tcggtgtgcc gatccactgg ggctttgcgg ctacaaccgg
     3001 tgcgaaaaaa ggctattttg ccaataactt aaccgtgcga acaggtgaac caaactcaaa
     3061 tacacctgaa tcgaaatgta tgttattaaa cattgagaaa attgtggggg cttaacaatg
     3121 agtacagttc aaactcaaaa cattattaaa atctccgcaa cctcggcgct gacaccggcg
     3181 ccgcaggctc gttcgcacca agtggaagta gcgaaactga tcgatgtcac cacttgtatc
     3241 ggctgtaaag cctgtcaagt gggctgttca gaatggaatg acattcgctc cgatgtaaat
     3301 gcaaactgtg tcggcgtgta cgacaaccct gcggatctaa atgcgaaagc gtggacagta
     3361 atgcgcttta acgaagtaga agaaaacgac cgtttagaat ggttgatccg taaagacggc
     3421 tgtatgcact gtgccgagcc gggttgcttg aaatcttgcc cgtcaccggg tgcgattatc
     3481 caatacgcca acggtattgt tgatttccaa tccgacaaat gtatcggttg tggctactgt
     3541 atcgcaggtt gtccgttcaa cattcctcgt atgaatccgg acgataaccg tgtttacaaa
     3601 tgcaccctgt gtgtggatcg tgtcaatgtt ggtcaagaac cggcttgcgt gaaaacctgc
     3661 ccgaccggtg caatccgctt cggtagcaaa gaagagatga agttctatgc agaacaacgc
     3721 attgctgatc tgaaatctcg tggctatgaa aatgccggct tgtacgaccc tgaaggcgtt
     3781 ggcggtacgc acgtaatgta tgtattacat catgccgaca aaccggagct ttattcaggc
     3841 ttaccgaaag atccgaagat tgataccaca gtaaccttat ggaaagacgt tttaaaacct
     3901 gtggcggcag tagcgttggg tggtttagct ttagcagaag ttgcacacta tattaccgtt
     3961 gggccaaacg ttgaggaaga tcttgaagaa caccaccata gcgaaaatgc agaaggaggc
     4021 aaacatgagt aagaaatttg aaatcacgaa cgataccaaa atcgttcgtc ataagccctt
     4081 agctcgtgtt agccactggt tcttagtaat ctcttttttt atgacgatgt ttaccggtgt
     4141 tgccttcttc ttccctgact ttgcttggct taccgagatt ttaggtactc cacagattgc
     4201 ccgtgcagtc cacccattta ccgggattat aatgtttatt gcatttatta ttatggcgtt
     4261 aatatattgg caccataata tccctgagaa aaatgatatt cgttgggcaa aaggcattgt
     4321 tgaagtacta aaaggtaatg agcataaggt ttccgataat ggaaaataca atttgggtca
     4381 aaaattactc ttttggactc ttattcttgc gatgttcact cttttagcca cagggattat
     4441 tatgtggaga caatttttct ctcactactt ctcgattcct atgctaagaa ttgcaatttt
     4501 acttcattca gcaagtgcat ttatgctatt taccggaatt ttagtacata tgtatatggc
     4561 attctgggta aaaggctcaa tcagaggtat ggttgagggt tgggttaccg ttcgctgggc
     4621 aaaaaaacac cacccaagat ggtaccgtga agaagtgcta cctgaattag aaagacaagt
     4681 agctgagcaa aataataaat aacctcaagt gcggtattat taccgcactt ttattttatt
     4741 ggtttaaaaa gaatattatg agtatcaaaa tactacctca agatgatatc aaacaagcag
     4801 ctagttcatt tcagcaaccc gagctcttat ttgctaatcc caaaaatctg tatttacgcc
     4861 gcgctaagcg gctacgtgaa ttagccaagc aaaacccatt cggtgaatat atggagtttt
     4921 ctgctaacct cgtggacatt caattagcat tacttgaaag ccagccaatt gcagattatt
     4981 ctcaaaaaat aaccgcttgt gtagagcgca cgcaaggaga aacaccgcta aatgcacaga
     5041 attttcagcg tactgatgaa tggcggacac tactcttagc cattattgag aaattcaagc
     5101 cttatgcaaa tgatactgtt cttgcaacaa ttgaagtatt ggaaaaggca gctaagtcag
     5161 agctagacac acttgctgat aatttgctaa atgaacgata cgaacttgtg ggcgcagata
     5221 aagctgtctt tatttgggct gctctctcac tttactgggt acaattagct caacaattac
     5281 cacgtaattc tcgtgcagaa ataggccata aacatttatg tccggtatgt aactcagcac
     5341 ctgtaagcag tgtgattcat ttcggtgaag ctcaagggtt acgttatcta cactgttctt
     5401 tatgtgaaag tgaatggcat gtagtacgta caaagtgtac aaactgtgat gaaaccggca
     5461 aactggatta ttggagctta gatacagtag aagcagcagt taaagctgaa agttgtggcg
     5521 actgccattc ctacttaaaa gtactctatc aagataaaga cgtgaatgtg gaacctgttg
     5581 ctgatgattt agcaactcta ttcttagatt ccgagatgga acaaaaaggt ctttcaagaa
     5641 gtgggataaa tccattttta tttcaagtag agtaactcat ttacaacaaa aacggagcat
     5701 aacgctccgt tttttattac atttaactca tacactatac ttttttaatc agctattttt
     5761 ttaacttcac agcggttagc aataatctcc cgatctgaca taaatgcgta tcggcattga
     5821 gatttaaaat attgaatcac agaatcatca agaggtcgtt gtgctccaac acgtaattcc
     5881 tccatagaaa aattactaac ctcttcatct ttctctttat ttttcaatac cttacgttca
     5941 gatattctaa acttaggctt gtcttgctgt ttttttactc cgtttaattt ttctttatta
     6001 ctaggaatag gattacttgc ataactaata ctattcatcg taagaaaaag agaaataaca
     6061 aaaaagctaa aagcgttttt catagcaaac ccataaataa aatgtagcat aatcataaaa
     6121 ttacgtaaca ttttattaca tttagcgcat ggttacaaat tcttcagatc ctgtcgggtg
     6181 aatagccact gtgttgtcaa aatcagcttt cgttgcgccc attttaattg caacagcaaa
     6241 accttgaatc atttcatcaa caccaaaacc aataccatgt aacccaacca ctttttcccc
     6301 ttccccaaca caaactaatt tcattcggca aggttgacga tgttgtgtaa ccgcagtata
     6361 cattgcagta aatgaagatt tatacacttt cacattttct gccccatatt gctcaatcgc
     6421 ttttggctca cttaaaccaa cagtacctat tggtgggtgg ctaaaaacga ctgtcggtac
     6481 taagctataa tccaaatgtt catttggttt attattgaac aaccgttccg atagcctgcg
     6541 accagctgca actgcaacag gagttaattc aataccacct tcaataatat caccaacagc
     6601 atagatattt ggcacattag tattttggaa tttatccact ttgataaaac cacgctcgtt
     6661 ggtttcaaca ccagcagcct ctaaattaat cttatctgtc gctggctcac gaccaatagc
     6721 ccacaccaag ctttcaacag aggtttcacg accatcttgc aattttaatg tcaatgaacc
     6781 atctgcattt ttaactactt cttgaggagt cgcttgtgta tgtaattcga tcccatcttg
     6841 agctaatact tcaagcaatg tatccactat taatgggtct tgattacgca ttggagcatg
     6901 ttgacgaaca aaaagatggg tatttactcc taaactatta aatactccag ctaattcaac
     6961 tgcaatatac cctgccccca caattgctac ggacttcggt aaagcatcta gtgcaaatac
     7021 accatcagaa gtgataccgt attcagcccc tttcacattg ggtacagttg gacgaccacc
     7081 tgttgcaatc agaatatggt ctgctgtgac ctcctcaacg gaaccatcag cataactcac
     7141 ttctaatgtt ttagcatctt taaagcgagc aaaaccattt aaaacatcaa cattattttt
     7201 tgccagcaca ttaccatatg aggtatgaat gcgcccaata taggcctggc gactctcaac
     7261 taatttggca taatcaaaat tatttaccgt aatgtcaaaa ccataatcag gggcgtaatg
     7321 gttaatcgct tctgcaactt gtgcaccata gaacatcact tttttgggta cacatcccac
     7381 gttcacacaa gtgccaccta aatgttttgc ttcaataatg gcacattttt gcccatagct
     7441 tgctgctcga ttaattgaag caataccacc actaccaccg ccgatagcaa tataatcata
     7501 atgtttagcc ataagctatt cctcgatcta taaaaacaaa agcaacttat tcgttaagcg
     7561 ctttatcaaa ttaaatttgc atagaagact aatgtttcat atgccctgaa ttcaacattt
     7621 tatcaatata cgccatcgct aatgctgaaa caataaaggc taagtgaata actacttgcc
     7681 acatcatttg cttttcatca agatttgaag cattgataaa tgtttgtaat aaatgaatag
     7741 aagaaatact gataattgcc attgaaagtt ttactttcaa aatagtcgca ttaacgtgat
     7801 ccaaccattc tggctgatca gggtgatcat ctacttttaa tctagagaca aaagtttcat
     7861 atcctccaac aataaccata accaaaagat ttgcaatcat caccacatct attaaattta
     7921 ata
//
LOCUS       DANLXK010000108         7667 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.109, whole genome shotgun sequence.
ACCESSION   DANLXK010000108 DANLXK010000000
VERSION     DANLXK010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7667
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            47..676
                     /locus_tag="PXD88_002056"
     CDS             47..676
                     /locus_tag="PXD88_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL6281599.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            824..1453
                     /locus_tag="PXD88_002057"
     CDS             824..1453
                     /locus_tag="PXD88_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6281600.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            1519..2034
                     /locus_tag="PXD88_002058"
     CDS             1519..2034
                     /locus_tag="PXD88_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL6281601.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(2082..3012)
                     /locus_tag="PXD88_002059"
                     /pseudo
     CDS             complement(2082..3012)
                     /locus_tag="PXD88_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3071..3721)
                     /locus_tag="PXD88_002060"
     CDS             complement(3071..3721)
                     /locus_tag="PXD88_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL6281602.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQFATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            4050..5408
                     /gene="mnmE"
                     /locus_tag="PXD88_002061"
     CDS             4050..5408
                     /gene="mnmE"
                     /locus_tag="PXD88_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL6281603.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            5409..6674
                     /gene="tilS"
                     /locus_tag="PXD88_002062"
     CDS             5409..6674
                     /gene="tilS"
                     /locus_tag="PXD88_002062"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL6281604.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(6664..7557)
                     /gene="xerD"
                     /locus_tag="PXD88_002063"
     CDS             complement(6664..7557)
                     /gene="xerD"
                     /locus_tag="PXD88_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL6281605.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         2376 a         1744 c         1637 g         1910 t
ORIGIN      
        1 attttcaata aaagcattaa aaacattatt agcattgggc gtggcaatgg ctgtttcagc
       61 tacttcattt gcacaaacca ctcaacctac tgcggctgaa caaatgaacg cagttaaagc
      121 ctctgttgcc gaaaaagcaa ctgtggctaa agaagcaaca aaagagaaag cagcggagtt
      181 aaaagccggt tctgcggaaa aaatggcgat agcaaaagcc aaaaccgaat catttaaaga
      241 ttccgctaaa aacaaaatgg acgcagtaaa agccaccaca gcagaaaaaa cggacgtgat
      301 taaagcgaaa gccgcatctg caagcgacac aatgaaagtg aaagctcagg aagcaaaagc
      361 cgccaccgca gagaaagctg caactgctca tgaaacctta aattcagcca aaaccgcaac
      421 cgctgaaaaa gcggcctcaa tgaaagcagc tgcaacagaa aaaatgtcag cagtgaaaaa
      481 atcacaaaaa gtgaatatca acactgccaa cgaagagcaa ttacaatcgc ttaccggcat
      541 tggtgaagca aaagccaaag cgattgtaga ataccgcaaa aaacacggta aaatcaaaaa
      601 tgcagcagaa ctggcgaaca ttcccggcat tggcgatgca accattgaga aagttgctcc
      661 atatttaact ttctaatgtt ctgcaagcgg ttattttgtt gcaaaatttt gcagaaaaat
      721 aaccgcttgt tcatttcaca ccttgtattc ttaaatttca cccccattaa gtgaatcgta
      781 tttctttcaa tacagtattc aataaactca aaaggaacag aaaatggcat tagatttcaa
      841 ttcagttgga ttagattcag tagaagcaaa aggcggttac ggcatcggtt tacaaattgg
      901 tcagcaactt ttaggcagcg gaatggacgt aaacgcagaa accgttgccc gtggtattta
      961 tgatgtgtta aacaacaatg agccggcaat cgacatcaat gaagtgaccg ctgcattaca
     1021 agaattaggt cagcgtgcgg aagcggctca agcagaagca ttcaaagcga ttgatgccga
     1081 aaacaaagcg ttcttggaag agaataaaaa agcaaacggt gtaatcgtta ccgacagcgg
     1141 tttacaatat gaaattttaa ccgaaggcac aggcgaaaaa ccgactgcga cttcaaccgt
     1201 gcgtgttcac tacaccggtt cattaattga cggcaccgtg tttgacagct cggtaaaacg
     1261 cggtcagccg gcagaattcc cggtaaacgg agtaattcgt ggttggacag aagcattgca
     1321 attaatgccg gttggctcaa aatggcgttt aaccattcca caagaattag cctacggcga
     1381 acgtggtgca gaagcatcaa ttccaccatt tgcgacctta gtgtttgaag tggaattgct
     1441 tgatattctc taatcaaact caaataaaaa acctgtggag gcatttcaca ggtttttgct
     1501 atttaagata actatattat gcagaaaaaa tcactcatat ctcgcttact taaaaatatt
     1561 ttcctctacg gcagcctgtt tatcattatt agcctggtgg ttgattggta tcgctcgccc
     1621 tccgctccgg cacaatttga gcaaaccgtg cattatgata ttcaacacca gccgaaagta
     1681 atcgcccaat taagccacga gaagccgatg ctactctatt tttggggaag ttggtgccac
     1741 tattgccaag tggtttcgcc aaatatccaa caattagcga atgacggcac ggaagtttta
     1801 ggtgttgccc tgaaatccgg cgatgaaaat gacgtacaag cctatctcaa tgaaaatggc
     1861 tacactttcg ctactttgaa tgacccaagc ggtgatttct ctcgaggttg gaacattcaa
     1921 gccaccccaa ccatcttgat tatcaaagac ggtaaaatcg cccaccacac caccggctac
     1981 actagctatt tgagcttaaa attcagacta tggctggcag acgtgttgta ttaaacgatt
     2041 cctttcattt gcaaaaaaat ccactaaatc cgaccgcttg tttacaccaa aaagacaagc
     2101 ggtactaaat tcattgtcat cattgtggtg atcgataaaa tcagcctcga tgagccaaaa
     2161 ataaagcctc ggtttttgcc gttgtcgaat ttcaccagta aatttgccat tgctgtgagg
     2221 gcgtacactt ccaccaccgt aaaaatcacg gtgtaaatat aggcagcggt cagagttgcg
     2281 acttttaccg caataaacca aggggcaata atcgccaccg ctaataacgg cgaaatccaa
     2341 attaattgct gtttggtgag gttgatttta cgagaaaaag tcgattgcaa actgacggtt
     2401 aaaacaccgt tgatgaataa cgcaatcggc gaatgctccg gtgcgtgcag gacattgtcg
     2461 aataaatacg gaaaaatcac tcagcggcac aaatagcatt aagtgagcga acaaaaactc
     2521 tttgttgatg atttccttaa tttgtgcgaa acgaaatttc acgccgccat tcacgccttc
     2581 caccgaataa aacggcttga ccataaacgc aaacaagccg gcttccaaaa taaagcagat
     2641 ccaaatcagc gtttcaatca tctcaaacct aataaacgga ataataatca gcggggcgag
     2701 cattgaagac atactggtga cttttagata tttgccttgt aaacgggttt tagcagcata
     2761 ttcatcgccg gcaatcgcca gtaaacaggc tctggcatta gtgccgaata agcaactccc
     2821 caacccaaag caagtggttg ccaacaataa aatgaggtaa ttatccgctg ctaaaaacag
     2881 catataggca accacatcta ataaacagcc caataacatc atttttgcca agccgtagcg
     2941 atccccccaa atgccggcta aaattgccaa tgcctgatta caaaacaaca gcaatgaaag
     3001 gaaaaaagcg atttgggcgt tatctagccc tttctctttt aaataaaaga aaaggggctg
     3061 tcctagataa ctaacctaaa ctacccttaa ccaattgttt taaaaaggat atttgagatt
     3121 ttaagtcact gtgattaaaa cgccattcgc attctttcaa atacagctca aaatgcactt
     3181 tgggaatgcc gttaaactta cgcaaatggc gttttgcttg gctcccaaaa ttctcaattc
     3241 cattaatgtg attttgattt tcagcgaagt gtgtgctgtg attaatgcga aaatggttaa
     3301 attcactcac atcaagcaca tcataacttc gatagaaatc ggtgtaaaca atactatcgg
     3361 gtttcacctt ttcccgaata atcggcaaaa gtgtggcaaa ttgcgtgttt ggtactacca
     3421 cggtataaac ctttccgtcc cgctttaaaa gcccgaacac ggcggttttg cctgctgcac
     3481 cacgtccacg tttaccttta cgatgaccgc cgaaataact ctcatcaacc tcaatttctc
     3541 cctcaaacat ttccaaatga gggctatgtt gatagataag caaccgcaag cgatggaagt
     3601 aatacgccgc cgtgtttttg tttacattga ccaactcaga tgctgttcgg gctgttaccc
     3661 ctgcaacaaa ctgctcaatg agtttgtttt gtttgtactg acttagacga ctttttctca
     3721 tttgggtatc ttaacctaaa tggagttttt agtcgttatc taggacagcc ccaaagaaaa
     3781 acacgctttg cattgaaaaa aaggcggtgg tggaaataaa acggcgtagg agtaatagtt
     3841 tttctaaaga cattcagaat ggttgaattg gttaaataaa gagcggttat tctacctttt
     3901 aagtcaaccc caatcaatcg gcttttgttt tacctttggc gtgggtttcg gtatgataag
     3961 cgatatgtag tggcgggtcc tgtgcccgcc taaataccaa tgataacttg cgggcgagca
     4021 caggactcgc ccctacgata aacaagaaaa tgaaagacac cattgttgct caagcaacac
     4081 cgattggcag aggcggtgtg gggattctgc gagtttccgg tccgcttgcc gaaaccgttg
     4141 ctcaagccgt attaggcaaa acattgccac cccgtatcgc aaattatttg ccgtttaaag
     4201 acgaagatgg cactgtgttg gatcaaggca tcgccttatt ttttaaagct cccaactcct
     4261 ttaccggcga agatgtgctt gaacttcaag gacacggtgg gcaggttatt ttagatttac
     4321 tgctcaaacg cattttacaa gttaaggggc tacgcattgc ccgagcaggt gaattttccg
     4381 aacaggcatt tttaaacgat aagctcgacc ttgcccaagc tgaagcgatt gcggatttaa
     4441 tcgacgccac cagcgagcaa gccgctcgtt cagccctgaa atcactacag ggtgaatttt
     4501 ctaataaaat caatgcgtta gttgattcag taatttattt acgcacttat gtggaagcgg
     4561 cgattgactt ccccgatgag gaaattgact ttctggcaga cggtaaaatc gaggcaaaat
     4621 taaatgagat tatcgctcaa ttagacggtg ttcgccgtga agcgaaacaa ggctcgattc
     4681 tgcgtgaagg aatgaaagta gtgatcgccg gtcgcccgaa tgcagggaaa tcaagcttgc
     4741 ttaacgcctt agccggacga gaggcggcga ttgtaaccaa tattgctggc acaacccgtg
     4801 atgtgttgcg tgaacatatt cacattgacg gaatgccgtt gcatattatc gacaccgccg
     4861 gtctccgtga tgccagtgat gaggtggaac gtatcggcat tcagcgtgct tgggaagaaa
     4921 tcgcccaagc cgaccacgtt ttattaatga ttgacagcac cgagcaacaa gccgatcagt
     4981 tccgacaaga gtgggcggaa tttctagcca aactgccggc aaatatgcct gtgaccgtaa
     5041 ttcgcaacaa agtcgattta tccggcgagc aggaaggctt aattcaggtg gacgatttca
     5101 cgatgattcg cctctctgcc caaaccaaag tcggcgttga tttattgcgt gaacacttga
     5161 agaaatcaat gggctaccaa agttctacgg aaggcggatt cttggctcgc cgccgtcatc
     5221 tgcaagcatt ggaaaccgct gccgagcatt tagagcgagg gcatatccag cttactcaat
     5281 tcttagccgg cgaattgtta gcggaagagt tgcgtatggt gcaaaatgcc ttaagtgaaa
     5341 ttaccggcca gttcacctct gatgacttat taggcaacat tttcagctca ttttgcatcg
     5401 gtaaataaat ggcacttttt aaccgctttc aaacccagtg tgcaacgcat ttgccgaacc
     5461 aaaccgcctt tttaatcggc ttaagcggtg gggtggattc ggtggtacta ctccaccttt
     5521 ttgcccgcac ctcatttcac gttagggcaa tttatgtcca ccacgggcta agcccaaatg
     5581 cggacgactg ggcagccttt tgcgaacaat attgcaagcg gttaaatatt ccctttattt
     5641 tacaaaaggt cagagtggat agctcaaacg gcgttgaaaa cggggcgaga gaagctcgtt
     5701 accaagccat tcaacaacag cttaagccca atgaagtgtt cgccaccgcc caccatttag
     5761 atgaccaagc cgaaactttt ttgctcgccc tcaagcgagg cagtggagtc aaaggattat
     5821 cggcgatgca agcggtcact tttttgcaaa attttaccgt ttttcgaccg ctactcactt
     5881 ttactaagtc agatttgatg ggttatgccg ttcaacatca gctaggttgg attgaggacg
     5941 aaagcaatgc cgataaccgt tacgaccgta atttccttcg caatagcatc ttgccactac
     6001 tcaatcaacg ttggcagcac ttcagccaaa tggttgcccg ttccgctcag cattgtgcag
     6061 aacagcaagc cttgatagaa gagctattaa gcaatgaact caagtcaaga acaggggaaa
     6121 aacaacaact caacattaac ggctttgggc aattttcact tgccaagcaa cagcaactta
     6181 gccgcctttg gctggaacaa aacggagtga gaatgccaag ccaagcccag ctacaagcgg
     6241 tcatttctga actgattttt gcaaaagccg ataaaaaccc acaggttaaa gtcggcgaaa
     6301 atattatcag acgctatcaa caagctattt acgttaccga agagatcgcc gacattccgc
     6361 cgtttgaggt agtacttccc acagaaacca aagtggaatt accctatcag ctcggtacta
     6421 ttattcgcca acaacaagag atcatttgca aaaaaaacgg gaaaaatcac cgcttgcaac
     6481 tgccccaaga gctggctcaa tcaactattt ctattaaaat cgggcaacta ggcaaagtaa
     6541 aatgctacgg caaggctcaa cgggaagaaa tgaaaaagat ttggcaaaat cacggcatac
     6601 ctgtttggga acgcaaccgt acaccgctga ttttttggca agacgaatta gttggcctat
     6661 tacctatcct ctagggtgaa attgctgatg aagcgatttc aaacgggctt ttgccacttg
     6721 agtgtaaatc tgggtggtcg ataaatcact atgccccagc aacatctgta ccactcgcaa
     6781 atcagcccca tgattgacca aatgggtcgc aaaggcgtgg cgaagcacgt gaggcgagag
     6841 tttatctgca tcaatacctg caagcacggc atagtgctta atccgatgcc aaaacgtctg
     6901 ccttgtcatc tgctgacctc gccggctcgg aaatacaaca tcagactgct gattattcag
     6961 caaaataggg cgaccgtact ggaaaaactc ctgtatccaa taattcgcct cctcgcccaa
     7021 tggcactaac cgctctttat cccctttacc gataattctc accacccctt gtttgaggct
     7081 gatattatcc atcgaaagcg acaccagctc cgttacccgc agaccggtgg catacagcag
     7141 ctccagcatt gctttatccc gtaactctat cggatctaac gtattcgggg catctagcaa
     7201 atccattacc tgatcttcac ttaaggattt gggtaaagaa gcaccccgtt taggggaaga
     7261 aagggttaaa gtcgggtcat cttggcgata atgctcaagg cataaaaaac ggaaaaattt
     7321 ccttaaacaa ctcaacattc tggcagagct tgtcgcctta tagccttgct ccaaacgctc
     7381 gccgagaaaa ccttgtaagt cgatatgatc gagagacaga aatgctttag gttcagaaaa
     7441 ataatcggaa aaacgctcta agtcagaacg ataagaggca acggtatttt cagacaaacc
     7501 gtgttcttgc catagtgtat cgagaaattg ttcaataata gggtcaagct cagccataca
     7561 agcgggtata ttttcaggaa attttgcaaa ttttaacaga attaaatcta taaaaataca
     7621 aaagcgatag aaacgaaaaa accgattagc ttatgctaat cggttta
//
LOCUS       DANLXK010000109         7537 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.110, whole genome shotgun sequence.
ACCESSION   DANLXK010000109 DANLXK010000000
VERSION     DANLXK010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(25..1860)
                     /gene="glmS"
                     /locus_tag="PXD88_002064"
     CDS             complement(25..1860)
                     /gene="glmS"
                     /locus_tag="PXD88_002064"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL6281606.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(1908..2669)
                     /locus_tag="PXD88_002065"
     CDS             complement(1908..2669)
                     /locus_tag="PXD88_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL6281607.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(2826..3026)
                     /locus_tag="PXD88_002066"
     CDS             complement(2826..3026)
                     /locus_tag="PXD88_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL6281608.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            3251..4285
                     /locus_tag="PXD88_002067"
     CDS             3251..4285
                     /locus_tag="PXD88_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6281609.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            4353..6283
                     /locus_tag="PXD88_002068"
                     /pseudo
     CDS             4353..6283
                     /locus_tag="PXD88_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
     gene            6381..7430
                     /gene="fbpC"
                     /locus_tag="PXD88_002069"
     CDS             6381..7430
                     /gene="fbpC"
                     /locus_tag="PXD88_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL6281610.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         2055 a         1704 c         1530 g         2248 t
ORIGIN      
        1 agatatcttg gggtttaact aacattactc tacagtcacc gcttttgcaa ggttacgagg
       61 ttggtcaacg tccgttcctt tgattaaggc aatgtgatat gaaagtagtt gtaacggcac
      121 ggtgtagaaa atcggtgcgg ttacttcatc aactttcggc attacaatcg ttttgaagcc
      181 ttctgcttct tcaaaacctg catcgtgatc ggcaaacaca tataactgac cgcctcttgc
      241 acgcacttct tcaatattgg atttcacttt ctcaagcaag tcattttccg gtgctaccac
      301 cactaccggc atatcgctat caattaatgc taacgggccg tgttttaact cgcctgcggc
      361 ataagcttct gcgtgaatat atgaaatctc ttttaatttc aatgcagatt ccatcgcaac
      421 cgggtaatat tctccacgac ctaagaacaa tgtgtggtgt ttatccgcaa aatcttccga
      481 taatttttcg atttgtttat cgaacactaa cgcactttca atttgtgctg gtaagcgttg
      541 taaagattgc acgatatggt gttcttgctc ttcactcatt ctgccttgta agcgtccaat
      601 cgccacattt aataacaata agcaagttaa ttgagtagtg aatgctttgg ttgatgctac
      661 accaatttca acaccagctt tggttaagaa tgcaaaatcg gattcacgca ctaatgaaga
      721 acttgccaca ttacacaccg tcattgccgc catatagcca gattctttcg ctaaacgcag
      781 tgcagctaac gtatctgcgg tttcacctga ttgtgaaagc gtgattaata agctgttcgg
      841 gcgagtaacg aatttacggt aacggaattc ggaggcaatt tccacatcac agctcacgcc
      901 tgcaatggat tcaaaccaat aacgtgaaac cataccagca ttgtaagagg ttccacaagc
      961 cacaatttgc acgtgttcta ctttcgataa aatctctgcc gcattcggtg caatggctga
     1021 aatatctact ttaccgtctt tgatacgacc atctaaggta ttcataatcg caaccggctg
     1081 ctcaaaaatc tctttttgca tatagtgacg atattgtcct ttatctgccg cgtctgcctc
     1141 aaaattgcct tcgtgaattt cacgctctgc cttgttgcct tcacggtcat aaatatccac
     1201 tgtgcgacgg gtaatttcgg ctacatcacc ttcttctaga taagcaaaac ggcgagttac
     1261 gcttaataat gcaagtgggt ctgaagcaag gaagttctcg cctacaccgt aaccaatcac
     1321 taacgggcta cctgagcgag ccacaattaa atgctccggc tcttcttcat ttaataccac
     1381 tgtgccgtaa gcaccacgca gttgcaccac ggttttttgt accgcttcca ataatgaaga
     1441 agcagaacgc aattcccatt caactaaatg agcaatgact tcggtatcgg tttgagattg
     1501 gaacacataa ccacgctctt gtaacactat ttttaactct tcgtagtttt cgataatccc
     1561 gttatgaact actgcaattt tgccactgcg gtgtgggtga gcattagttt ctgacggctc
     1621 gccgtgcgtt gcccagcgag tgtgtgcgat cccagtgccg cctaatagtg gcttagtgtc
     1681 taacgcctca tctaaggctt tgactttacc gacacggcgt acaatttgca ttgttttatc
     1741 atctgcattt aatactgcta caccagcaga gtcatatcca cggtattcta agcgatgtaa
     1801 accatcaacc aagatttctg cgatatcacg ttgtgctact gcacctacaa ttccacacat
     1861 aaatttgctt tcctatgttt aagtttaaaa attcatttga gctactgcta ttttgcaata
     1921 accacttcga cacccatttt ttcgatttgt tctttcgttt caaaacttaa ttgactgtcg
     1981 gtaataattt tggtaatatt ttgccatttc aattcaatat tcggcatttt ccgaccgatt
     2041 ttttgcgatt caattaacac aatcacttca cggctcactt ctgccatcac ctgacttaag
     2101 ccaactaatt cattaaaggt agtcgtgcct cgagccaaat ctaaaccgtc cgcaccaata
     2161 aaaagctgat cgaaatcata tgaacgcaat acctgttctg ctactttgcc ttgaaaggac
     2221 tcagaacggc tatcccaagt gccgccggtc atcaacactg ttggttcgca ttcgagggaa
     2281 gtcaattccg tcgctaaatt cagcgaattt gtcatcacca ccaagccggt ttggttcaat
     2341 gcttttacca aagctccggt cgtgctgccg ctgtcaataa tgatgcgatt atgatcacga
     2401 atacaatcac gtgcggcttg agcaatcatt ttcttttgaa tcgaaagttg ctcaataaac
     2461 gcttcttcca tcatttccga tggaattttt accgccccac catacttacg caataaaaaa
     2521 ccactttctt ccaaagcggt taaatctttt ctaatcgtaa cttcagacgt ctcaaagaaa
     2581 tgagcgagtt catctacact cacttcattt ttctcttgta ccatttgaac aattaaatgg
     2641 cggcgttgtt gcgtgttacg ttttgacatt ataatcttca cttaaatttc gtttcaaaac
     2701 ttttgcatta taaagaaagc tcgcgaaaag aaaagcagaa aatgcaaaat ttacaaaatc
     2761 tatacaaaat aaaaccgctt gtaatattga tttacaagcg gttgatttct tgaaattttt
     2821 tgcaattatt tgatttggct accaatcacg ccaccaagtg cggcaccacc taaagttgca
     2881 ccggtagatt caccaatcgc gtgaccagcc acaccgccaa ttgctgcacc gattgcagta
     2941 ttacgttgcg tttttgtcat attgttacag ccagacacag caaccattaa taccattgca
     3001 ccaacaactt tcaaaataga tttcataata atccctcata attaatcaat ttcaaataag
     3061 ccaatattct tggctatgct ataagattta atttatttag aaaggttcaa ctactaccac
     3121 ctatgaattg caaatttttt cacaatttag gccgcttgtt gattgaactg tgagcttgct
     3181 cacagaattt tatggtattt cttgctatat tgtatagcaa tctatgcgat aactcattaa
     3241 ggaaataaaa atgaaattaa aaaaattatc tttagcactc tcgactttat tactcggttc
     3301 agcctttgcc aactctgctt tagcggaagg tcgtttaacc gtttattgta gtgccactaa
     3361 tgaactttgt gagcaagaag tgcaagcatt cggcaaaaaa tataatgtta aagtagcatt
     3421 tgtgcgtaat ggttcaggca gtacattggc gaaaattgaa gcggagaaaa acaatcctca
     3481 agctgatgta tggtatggcg gtactttaga tccacattca caagctgcag aaatgggttt
     3541 actcgagccg tataaatcac cgaatctcga acaaattatc gaaaaattcc gtgatccggc
     3601 aaaattaaaa ggcaactact cttcggctgt gtatatgggg attttaggtt atggtgtgaa
     3661 tttagaccga atcaaaaaac tcggcattga aaaagtgcct agcacttggg aagacttgct
     3721 cgacccacgc ctagccggtg aaatccaaat tgccgaccca caaagctccg gcacggctta
     3781 tactgcgatt gcgaccttcg tacaactttt aggagaagaa aaagccttcg actatttccg
     3841 caaattacac aaaaacattt cacaatatac caaatccggc atcacaccgg cacgcaatac
     3901 cgcccgtggt gaaaccgcta tcggtatcgg tttcttacac gactatgcga ttgagaagaa
     3961 aaacggggct aacattgaaa tgaccgcacc aacagacggc acaggctacg aattaggtgg
     4021 tgtgagtatc ctcaaaggtg caagaaatct tgataatgca aaactgttcg tggattggtc
     4081 gctttctaaa gaagctcaag aactctcttg gcaaaaaggc aatgcgttcc aagtattaac
     4141 caacaccacc gcagaatctt ccccttatgc tctagatccg aaaaacttaa acttaatcaa
     4201 ctatgatttc gagaaatacg gctcgagcga agagcgtaaa cgcttgattg ataagtgggt
     4261 aaatgaagta aaattagcga aatagtgtta atctttccac tgaggggata agcaattatc
     4321 ccctctctaa ttataagaat ctgtgaggtg ttatgcagaa tttttccttt tcccgaccgc
     4381 ttgtttgggt gcttatcggg ttactcggtt ttctcttgtt accgtctaaa gccttagatt
     4441 atgggctgtt tgactcaacc tctgatgaac tgctcgccgc aatgggctgg gcgtgctgtt
     4501 cgcctttatt ttcctgtcag cgattgtgct gaaaatcagc ctcggttatg cggtgttgcc
     4561 gttgattatt gccattatgg ggcttgcgac cccaaattta gcaacgctca aagtaatgca
     4621 gggtgaccgc tttattatcg gctcgttact gagcattatt ctgctgattt tcttttttat
     4681 tgtgtatccg accatcgcca tttttgtgtc gatgttctac aacggctcgg aatttgtgcc
     4741 aagccaagtg ctgacaattt tgcaacaacc ttatgtcgtt cgagtcatcg gtaactcgct
     4801 ctcggttgcc ggcacggtgg gcgttctctc caccctattc ggcttagcct ttgctctcta
     4861 caccactcgg attgctaaac gctcggcgtt tatcgggcgg attttctcga ttttacctat
     4921 cgtcaccccg ccgtttgtgg tcggtttagg cgtaaccctg atgcttgggc gttccggcta
     4981 tgttactgaa tttttagtgg attactttgg ctttgccaac aattggctgt acggtttcac
     5041 cggtattgtg atagcccata ccctcgcgct cacgccaatg tcgtttatga ttttggaagg
     5101 ggcattgaaa tccattcacc catcggtgga agaagcagct tacaccctgc gttccaaccg
     5161 ctatcaagcc ttttttaaca ttattttccc attgttaaaa ccggcattgg caaactcctt
     5221 tttagtggtg gcaattcaat ccctcgccga tttcagtacg ccgttagtat tgggcggtag
     5281 ctttgatgtg attgcaaccc aaatctactt ctacattgcc ggttctcaac tggattatgc
     5341 ctctgctagc acgcttgggg caattttgtt ggtgttctcc ttagccattt tcgtgatcca
     5401 atacctctgg atcggcaatc gctcttatgt gacggtgtcc ggcaaatcct atcggggtga
     5461 tgtccaagac ttaccaagcg gtatgaaatg gctgattatt tgcaccttat tgttctgggg
     5521 aaccttcaac ttagtgctgt acggcagtat tttctacggc agtttcaccg tgaactgggg
     5581 tgtggattat accttaaccc ttgataacta catcaagcta ttcgggcaag ggtttagcga
     5641 tggcggtttc ccttcgttaa ttcaaaccgt gattttcgct gccgctgccg ccccgattac
     5701 tgcactattc ggcttgctga tcgcctatgt gacagttcgg cgtgatttca aaggcaagaa
     5761 aaccctggaa tttttaaccc tgctctgctt tgccgtaccg ggaacggtgg caggtgtttc
     5821 ttacattctc gcctttaacg atgccccgat ttacctaacc ggcaccggta tgatcatcat
     5881 tctctcaatg gtaatgcgga atatgcctgt gggtatgcga gcggcaattg ccggcttagg
     5941 gcagttggat aaatcgctgg acgaagcctc gctctcgctg aaagccggtt cgttcaaaac
     6001 gatgctgttt gtggtgttac cgctactcaa accggcactg ctctccgccc tcgtcaccag
     6061 ctttgtgcgg gcaatgacga ctgtcagtgc gattgtattc ttagtcaccg ccgacactcg
     6121 tgtggcaacc tcctacattc tcaaccgtgt ggaagacggt gaatacggca ttgcgattgc
     6181 ctacggctca attttaattg tggtgatgat ggcgattatc ctgatttttg actggattgt
     6241 cggcgacacc cgtatcgccc gttctaaggc gaaaaaaatg taaaaagaca tctactctct
     6301 ccctttatgg gagagagaca gaaaaatact tcgttcagaa gtatttttca gagagaggga
     6361 tataattaaa aggacaatat atgaacaacg atttcttagt attaaaaaac gtcaccaaat
     6421 ctttcggcaa ggtgacggtc attgataatc tcaacctcag tattccgcaa ggtaaaatgg
     6481 tgacattact cgggccgtcc ggctgtggta aaaccaccgt actgcgttta gtggcagggc
     6541 tggaaaaccc gacttcgggg caaattttta ttgatggcga agatgttacc caaagttcga
     6601 tccaacaccg tgatatttgc attgtgttcc aatcttatgc gttatttccg catatgtcga
     6661 ttggcgataa tgtcggctac ggcttgaaaa tgcagggcgt accgaaagaa gaacggctgc
     6721 aacgagtgaa agaggcgttg gaattggtgg atttaggcgg ctttgaagat cgctttgtcg
     6781 atcaaatctc tggcggacaa caacaacgtg tcgccctcgc ccgtgcctta attctgaaac
     6841 cgaaagtgct actgttcgat gaaccgctga gtaaccttga cgctaactta cgccgttcaa
     6901 tgcgggagaa aatccgtgaa ttacagcaac gtttaaacat tacttccctt tatgtgactc
     6961 acgatcagtc cgaagccttt gcggtttcag atgaagtaat tgtgatgaac aagggaaaaa
     7021 ttatgcaaaa agctccagcc aaagagttat accttcgccc taattcttta ttcttagcaa
     7081 attttatggg tgaaagcagc atttttgaag gcacgatagc tggcaaccaa attaatataa
     7141 atggatatca atttacgtta gcaaatgctg aacaatttga gttacccgat ggggaatact
     7201 tagttggcat tcgtccagaa gctattcatt tagctgaaca aggaaatata agtcaactct
     7261 gtaaaattaa aaatgcagtt tatatgggaa atcattggga aattatagct gaatgggaag
     7321 ggaaagattt attagtcaat actaaacctg aaaattttta ccctcatatc aaacaggcct
     7381 atgtacattt tatcgaacaa ggtgtttttc ttttaaagaa agagctataa cgaatttata
     7441 ctaaattaag aggaaggtag ttataactat ttagcaattt tgagaaaaat aggccgcatg
     7501 caaaatctct tgatgacaag cggtcttttc tcgccga
//
LOCUS       DANLXK010000110         7531 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.111, whole genome shotgun sequence.
ACCESSION   DANLXK010000110 DANLXK010000000
VERSION     DANLXK010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7531
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            35..778
                     /locus_tag="PXD88_002070"
     CDS             35..778
                     /locus_tag="PXD88_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6281611.1"
                     /translation="MFEFIKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLG
                     ILILYIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITG
                     IPLERMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTT
                     KENAIFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKL
                     NFMHFIPQAGAMNSNMLALKEWIGYWKEK"
     gene            complement(855..3053)
                     /gene="priA"
                     /locus_tag="PXD88_002071"
     CDS             complement(855..3053)
                     /gene="priA"
                     /locus_tag="PXD88_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL6281612.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(3065..3677)
                     /locus_tag="PXD88_002072"
                     /pseudo
     CDS             complement(3065..3677)
                     /locus_tag="PXD88_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(3670..4569)
                     /gene="rarD"
                     /locus_tag="PXD88_002073"
     CDS             complement(3670..4569)
                     /gene="rarD"
                     /locus_tag="PXD88_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL6281613.1"
                     /translation="MLKGILLSLSASVLFGCMYYLAIFLKPLAGVSIFGIRMLVTIPF
                     LFLALYLFKKQNEFWVFLQRLKQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVS
                     MGYLLMPIIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGY
                     PIYFYLRRKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLI
                     SGTALISYTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISIS
                     FLVLDGMFALRQQRKRKLSVNNE"
     gene            complement(4796..6013)
                     /locus_tag="PXD88_002074"
     CDS             complement(4796..6013)
                     /locus_tag="PXD88_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL6281614.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            6201..7505
                     /locus_tag="PXD88_002075"
     CDS             6201..7505
                     /locus_tag="PXD88_002075"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL6281615.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT         2268 a         1653 c         1487 g         2123 t
ORIGIN      
        1 tatctttact tatttttact acgatattct ttctatgttc gagttcatta aactgatcac
       61 cgcaatgatc ctcccgccat ttaatattat tttgctgtgg ttgttagcat taatcctctt
      121 ttctttaggc tataaatacg ctgcttactt ctttgccttg ttaggtattc tgattttata
      181 tatcttcagc attccctata cttcacagaa attaggggat tcattagtcg aagcagagcc
      241 atttaccata gagaaatata aaaatgctca agcgattgtg gtgctaggtg gcgggctacg
      301 agacagccaa gagttattcg gcaaactggc aattaccggt attccgctgg aaagaatgcg
      361 ttatgccgct tatctgcata aagaaaccgg cttaccgatt ttagcgaccg gaagcagccc
      421 aaatgggact tctgaggcaa aggttatggc agatgaattt aaaatgttct tcaatattga
      481 gaccaaatgg ctggaaaata aggcgaaaac caccaaagaa aatgcgattt tcagccgtga
      541 gattttagaa aaagagaata ttcataaaat cattcttgtt accaaccaat ggcatatgaa
      601 acgggctgaa atgctgttta gccaacaagg atttgaggtg atgtctgcca gcgtcggttc
      661 tggcgatacg cccgatcatt acaaactcaa ctttatgcac tttattccgc aagccggtgc
      721 aatgaatagc aatatgctgg cattaaaaga gtggattggt tattggaaag agaaataacc
      781 gaagataaat agcagcaagg caggttttca cctgccttct ttttgcaaaa aatcagtcaa
      841 aaacaaccgc ttgtctaact aatctcttgt gggtcaatgt cgatattcag cctgatatta
      901 ttcggaatgt ttaaactttc cctttcttga tcaaaggcat cgagtagctg ttgtaatgct
      961 cctcggagag ggtgttgaat cagcaataac cagcggtaat gtcctgcttt cttcgccatt
     1021 ggggctgaaa atggtggagg gagctggaag ccttgcccgt tttgttgctg gattttttgg
     1081 ctaaaataat ctgctaattg ctcaagcagc tgtaaggttt gttgattatc tttgccggtc
     1141 gctttgaaca aaacttgcga ggaaaatggt ggcaaactca ttaattgcct catttttaac
     1201 gcctcatcag caaaagctcg gtagccttgt tccagcaagg ttttaagcag tgggtgatca
     1261 gggtaatggg tttgtagcac cacttcgcct tttttctccg ctcgccctgc tctgcctgcc
     1321 acctgtatgt aaagctgtgc taatttttct tccgcacgaa aatcagttga aaataacgct
     1381 gaatccacat taacaatcgc caccaacgtc acattcggga aatgatgccc ttttgccaac
     1441 atttgcgtac caatcaaaat ttggcttttg ccctctcgaa tagcggtcaa atggttttcc
     1501 aatgcacctt tgcgagcggt agaatctctg tctatacgag tcacttggta atgagggaat
     1561 tgctgattta gcacctgctc aagttgttct gtgccgacac cggtagttat taaatgggtt
     1621 gaaccacaat gtccgcattg gcggggaatt accctttggg tggcacaatg atggcaacgc
     1681 aacacttttt gcttttggtg gtaagtaaaa ggcttattac acgcctcgca ctcacaaacc
     1741 caaccgcatt cgtgacaaag taataccggg gcaaagccac ggcgatttaa aaacagcatc
     1801 acttgattgc cttgctctaa ctgggttttc atcattgaaa gcaagcgctc cgacaaaccg
     1861 gcagttaccc gttgcgtttt taaatcaata atctgctgat tggcaagttg tgcattgccg
     1921 gcccgagcgg ttagtgtcag ttcgataaat ttcccgtttt gcacattgtg caaactttca
     1981 agacttggcg ttgccgagcc cagcacaatc ggaatatttg catttttcgc cctaaccacc
     2041 gccaaatccc gtgcgtggta acgccaaccg tcttgttgct taaacgagct atcgtgttct
     2101 tcatccaaga taatcacgcc caatttttga aactgggtaa ataaagcaga gcgagtgccg
     2161 attacaatcg cactttctcc atttttcgcc cgcaaccacg catttaaccg ctcagtttcg
     2221 ttcatattcg agtgcaatac gtcaatttca acgttaaagc gagctttaaa gcgttgtacc
     2281 gtttgcggtg ttagcccgat ttcaggcaca agcagcagca cttgttcctc tcgcttaagc
     2341 accgtttcaa ttaactgcaa atacacttcg gttttgcccg agcctgttac gccattgagt
     2401 aaaaagctcg caaaagtggt ttgtgcattt aaacggctga ccactaaggt ttgttgttta
     2461 tttaagatca gccgattgtt agtatttact aacggaaatt cacctagtga gtcttgccac
     2521 gcttgtgcca taaacggcac atcaattttc tcgatatacc ctttttcgag taagcctttc
     2581 caagcagatg ggctacaagc ggtcggtttt tcaaaatatt ttgcacattc ggcaagctcg
     2641 gttaaccgtt ccacctgctt tttggctttt ttattttcac cgataatcag agatttccgc
     2701 ccttgctccg tcaccacaaa ataattcggt tgaactcgct cagtggaatc gccattgcgt
     2761 aattttatcg gtaaggctcc ggttagcact tcaccaatcg gggcgtggta ataacgagcc
     2821 gcccagttca gcagttgcca catttctgag tcaaaaatcg ggctagaatc caacgctgct
     2881 ttaatcggtt tgagtttttc ggttggcaca tcactagttt gcgggaaatc gaccacaatg
     2941 ccgattttgg tctggcgacc aaaaggcaca accacccgcc cgccttggca ggcattgaat
     3001 gccggcggta gcaaataatc aaaataacga tgtaacggca cattcagtgc cactctgatt
     3061 aatctcactt ctctaaacca attttgattg caagcccgat aaatatcgag ccgcagattt
     3121 tatttaacca atttccaaag gtttgattat gccgtaaaaa acgcccaaca ggtgcagcgg
     3181 ctaagactaa aatacttacc caaataatgc tggtggataa aaacgttagc cccaacagca
     3241 taaaaggtat tttccaaatt actggataca aactgcggca ataacgccaa gaaaaagagc
     3301 aatactttcg ggtttaatag attggtaatc aacccttgac ggaatatctt ccatagagga
     3361 agtttgtcta gattgatttt ctctaacacc aacggctctc gccacatttt aatgccgaga
     3421 tagcagagat aaattgcccc tgcgtatttc agaaaattaa ataaagtggg cgaatgtgcc
     3481 acaatgcctg caagcccgag tgaaaccgca agaatatggc ataaaatgcc tgctagaatg
     3541 ccgaatgaag acattaagcc cgactttttc ccctcagcaa tagtgcgagt taaaatatag
     3601 atagtatccg aacccggtgt aagatttagc agaatacaag cggtcaaaaa tccccaataa
     3661 tttacaatat cactcattat tcacactcaa tttacgttta cgctgctgac gaagagcaaa
     3721 cataccatct aatactaaaa atgaaatgga gatcaacaag caaatcatca acaagtaaga
     3781 ttcatttgct aacctttcgc caattaagaa agacaccacc aacatcaata gtggctcaac
     3841 atagcctaat aaaccaagca aattaaaggg taaaatcgtg ctggctagcg tatagctgat
     3901 aagtgcagtg ccactaatta aacccagtaa tgcaataaaa tagtaaatat tgaggttttg
     3961 tgtttcgaca tattgcatat cggtttgaga gataaaataa caagctacag ggagcaaata
     4021 taaaatttct accacaaagc tatgtaaatg gcttaagcca aactttcggc gaaggtaaaa
     4081 atagattggg taacctgtgc aaacaaataa acttgctatc gaaatttttc ccgtaaacaa
     4141 aatattactc gctacaccaa tgaaagcaac cacaatcgcc aaccatttat tcaaggaaag
     4201 cgtttcttta taaaccactt tgccaaatgc caccataata atcggcatta atagatagcc
     4261 cattgaaacc tcaatcgctt ttccgctatt gggagcccat aaaaacagcc acatctgccc
     4321 gcccacaata gatgccgtga ttaaaataac cagcaataaa taaggctctt gctttaggcg
     4381 ttgaagaaat acccaaaact cattttgttt tttaaataag tataaagcaa ggaaaagaaa
     4441 aggaatcgta accagcatac gaatgccgaa aatgctcaca cctgccagcg gttttagaaa
     4501 gatcgccaaa tagtacatac agccgaataa cactgaggct gaaagagata aaagaatgcc
     4561 ttttaacata gtgataagaa agtaattatt ttttaatttt tcaaatctcc cctacccctc
     4621 ttttctaaag aggattgtcg agttctaaat aaatgaataa tgttcggagg taggggcggg
     4681 tccagtgccc gcccgcaaat taatatcgtt agcggacagg cacaggacct gtccctactg
     4741 atattataga acttacaacc ctgcttttat aaagtggggt aaagggagat tcgacttagt
     4801 cttgacgata ggttttcaag aaattcgcaa ggcgaccaat cgcttcttca atttgatgtg
     4861 cataaggcaa agttaccaca cggaagtgat ccggtttttt ccagttaaaa ccggaacctt
     4921 gcactaatag cactttttct tgtcgcaaca aatcgtagat gaatttttgg tcatctttaa
     4981 tgccgtacat ttcggtatca attttcggga acatatataa cgcccctttc gcttttacac
     5041 agctaatacc cggaatttgt accaataatt cgtgcatttt atttcgttgt tccagcaaac
     5101 gaccgcccgg caacacaaat tcattgatac tttgataacc acctaatgcg gtttgaatgg
     5161 cgtgttgcat cggcgtattg gcacataaac gcatagaaga gagcatatcc aacccttcaa
     5221 taaaaccttt ggcttgatgc ttcggaccgc tcagcaccat ccagccctga cggaaaccgg
     5281 caacacgata cgccttggat aaaccgttat aagttacggt taatacgtcc ggtgcaagag
     5341 cagcaatatg gtgatgtacc gcaccatcat agacaatttt ttcataaatt tcgtcagcaa
     5401 aaataattaa gttatgctga cgggcaagtt ctgcaatttc cagcaaaatt tgacggctat
     5461 acactgctcc ggtcgggtta ttcgggttga taaccaaaat ccctttagtg cgaggcgtga
     5521 ttttcgattt aatatcttca agatcaggga accactcatt ttcttcatcg cacaggtaat
     5581 gcactgcttt accaccggct agggttgaag ctgctgtcca taacggataa tcaggcattg
     5641 gaattagaat ttcatcgcca tcatttaata acgcctgcat cgacattgta atcagttcag
     5701 atacgccgtt gccgatgtaa acatcgttta catccatacc acgcatacct tttgattgat
     5761 aatattgcac aatcgctttg cgggcagaat acaaaccttt tgaatcacaa tagccttgtg
     5821 cggttggaag attacgaatc acatccacta aaatttcatc gggtgcttca aagccaaaag
     5881 gggctgggtt accgatattt aattttaaaa ttttatgccc ttcttcttct aagcgaagtg
     5941 cctctttatg aattggccca cggatatcgt aacgaacctg agctaactta tctgatttgg
     6001 gaaaacgatc cattgtaaac ttcctataat gtattatcta attgtagtct catcccgctg
     6061 ttcaaaaaat cggtaattcg gaatgaattt gtaaacatta ctctaatttg ggaggaaaaa
     6121 aaagaggaaa tacgttaaaa tggagacctt tttttcaatc agctaaaaac aagcggtttc
     6181 tttttctgat ttttttgcaa atgcttattt ttcatcaatt aaaacaagaa cttacaaaaa
     6241 gttactcaaa agtgggaaga gagcaaggat tggtcgccat tcaagcctct atgccgctat
     6301 tggaggcaaa tattccgcta ctcggttggt tgaaaacaca aaaaacaagc taccctcact
     6361 tttttctgca atatcgtgat acagatcaga ccattgccac cattggcaca cttcgccaat
     6421 tttatacgct agaagctgca caatctttta ttcaacaaca tcatttcccg ttaatcggcg
     6481 ggcttcaatt tgaaggcaat acgcaattta ttttgcctca attttcattg gtaaaaaatc
     6541 agcaaaattt aaccgcttgc ttctattttg atagtgataa ctttgaacaa caagcggtta
     6601 tttttgaaca atttcttgca aatttcagcc aaattaccga attaggacta acggataatc
     6661 cgctcgtttc aatgagtgcc accagccatt ttgagcaatg gaaagccaat attgaaaaag
     6721 cgattgtttc tattgagcag ggcgattttc aaaaagtggt attggcaaat gcgatgagac
     6781 ttcattttga gcaacccatt tgtgcttaca gcttgctggc acaaagccaa aaaacaaatt
     6841 taggttgtta ccacttttta tgggcggaaa gtgctgatgt tgcctttctt ggctcaaccc
     6901 ctgagcggct atatcaacgc caagggctac acttttctac cgaagccctc gccggcaccg
     6961 ctgcggttac caccagtgaa gtgcaaaccg aactcaatgc acaatggctg ttaagtgatc
     7021 ccaaaaatat ctatgaaaat caattagtgg ttgatgacat tgaaaaccaa ctcaaagatt
     7081 gcgtgaccga atttgcagta tccgaggcaa aaattaagcg tttgcataat gtgcaacacc
     7141 tacgccgcca aattcaagca acgctcaaac cggacacctc agattcagat tgcttaagca
     7201 aaatccaccc aactgcggca gttgcagggc ttccccgcca aaaagcaaag ggttttatta
     7261 ccgaaaatga gccttttacc cgccattggt atgcaggtac attaggcgta atgggcaacg
     7321 aggaagccga attttgcgta acactccgtt ctgcattaat ttcacaaaat tcaattacgc
     7381 tttatgccgg tgccggcatt gtgtcaggct cagatccaca atcggaatgg caagaaatta
     7441 aacgtaaggc acaaggaatg gcaaaactgt tggatgttga tttagtaaca aaaggggaac
     7501 tgtaagctag gctttcagaa cttaatctct t
//
LOCUS       DANLXK010000111         7530 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.112, whole genome shotgun sequence.
ACCESSION   DANLXK010000111 DANLXK010000000
VERSION     DANLXK010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7530
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1995
                     /locus_tag="PXD88_002076"
     CDS             <1..1995
                     /locus_tag="PXD88_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6281616.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAGSFGRGLMGAGVGIAAGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRI
                     DGKRELLDAVQKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGA
                     SANDMAQIAISSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQA
                     GLSGIEGFERLLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKT
                     GKTKAIDFAKSMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRL
                     FNELTNLVEGTAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIR
                     DTNAHKVESLKNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVK
                     IFGAALAASSVLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGV
                     ATMLHGDQAPMSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDV
                     SAYEAKQKNSNTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGI
                     EAGLASQSHTIANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1995..3287
                     /locus_tag="PXD88_002077"
     CDS             1995..3287
                     /locus_tag="PXD88_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL6281617.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3290..4417
                     /locus_tag="PXD88_002078"
     CDS             3290..4417
                     /locus_tag="PXD88_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281618.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4419..5081
                     /locus_tag="PXD88_002079"
     CDS             4419..5081
                     /locus_tag="PXD88_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL6281619.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            5200..5550
                     /locus_tag="PXD88_002080"
     CDS             5200..5550
                     /locus_tag="PXD88_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL6281620.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5563..6624
                     /locus_tag="PXD88_002081"
     CDS             5563..6624
                     /locus_tag="PXD88_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL6281621.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
     gene            6624..7214
                     /locus_tag="PXD88_002082"
     CDS             6624..7214
                     /locus_tag="PXD88_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL6281622.1"
                     /translation="MVTINSKHGKALGGLLPPVSYDPNGRWLALSLEVEGRELDRIDA
                     RAKTLIDAVDVSTGIFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQ
                     VAKELGYCIKISEPQPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMA
                     GDALMGRYKDPILESLLEEVKPAFSRVWVRYLGDIE"
     gene            7211..>7530
                     /locus_tag="PXD88_002083"
     CDS             7211..>7530
                     /locus_tag="PXD88_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281623.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDATRDNFNALANPDGYKHIGRCKSVA
                     ELRT"
BASE COUNT         2220 a         1395 c         1905 g         2010 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctcgcaa
       61 aatgagctac gccgtgcctc agaagcgact aagcaacgag tccgagagtt aaatgctgaa
      121 ttgggtaaaa ccagttttgg ggataaggca ggaagttttg ggcgtgggtt gatgggtgca
      181 ggggttggaa ttgctgcagg tgcagcaatg gctcgccagc ctgcaagaaa tcaaatggaa
      241 tttgatagac agcttgcaat ggtagcgaat accgcctttt cagatcgtga tgtgaaaggg
      301 cgtattgatg ggaaaagaga gttacttgat gccgtacaga aagcagtaag tgtaggcggt
      361 ggctcaaaag aagaagcgtt gagctcacta gacgctttac ttgcctcagg tgctgtttct
      421 accgaaaccg ctctcaattt actcccaacg ttgcagaaag gtgcggtcgc aacaggggca
      481 agtgcaaatg atatggctca aattgctatt tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg gtcgagtctt agatatggca gttgccgctg ggcaagccgg tagctttgag
      601 cttgcagata tggcaagttg gttgcctcaa caaatggccg ctgcaaaaca agctggctta
      661 agcggcattg agggatttga gcgactttta attgcaaacc aacaggctcg tgtcactgcc
      721 ggtacaagta acgaggctgg taataattta gtgaatctgt tgggtaagat tactgctaaa
      781 gaaactaatg agcgttttaa gaatattgaa tataaagatc cgaaaactgg caaaaccaaa
      841 gcgattgatt ttgcaaaatc tatggagcat tacaagggaa aagggcaaga ttcattgcag
      901 gcttttatgt ctattatgga tgacgttgtc gggagtgata aacgctatca agaactacaa
      961 gctaaactta aaactgctaa aggcgaagag cagaaacgct tattcaatga attaacaaac
     1021 ttagttgaag gtacggcaat tggagaaatt atttctgatc gccaagcatt aatggctcta
     1081 ttagggataa agaataatgt tcaattaggt gaaaaagtac agaaagatat tcagaatagt
     1141 gaaggagctg ttgaaacctc tcacgctgtt attcgggata ctaatgctca taaagttgaa
     1201 tcattaaaaa atacaactga atttgcacaa atgaaaaact ttgaaaaagt aaatggagtg
     1261 ttaggcacat tagctgaatt actgaataaa tacgccaatg aataccctaa cttaactcaa
     1321 tttttaagtg gtgcaacaga tgccgttaaa atttttggag cagctcttgc tgcatcaagt
     1381 gtgcttgatt tattaaccgg taaaaaagac aagggcggac taattggtga tgttttggat
     1441 aaatcatcaa aagctagtgg aggtaaaggt aaggtaggta aattgctttc ggttggtggc
     1501 tcttttgcta gtgttgcagg cgttgccaca atgctacacg gcgaccaagc cccgatgagt
     1561 gaggagcgaa aagcagagtt aagagatcct aattatcaag ctcgtaaaat gtacgagtac
     1621 aaaaaagaga ttttaggtag ccgtttccac tcgttttttc gtagtaatga aacccttgag
     1681 caatatcgga aagatgtgag tgcttatgag gctaagcaaa agaatagcaa tactatggga
     1741 gctgtacaag gggttttaag taccattccg agcttacaag agttacgccc taaagttgat
     1801 tcggttactc aaaccctatc cacctatcaa gccgactttc aggcttttgg ggcaacgatt
     1861 tcagccggta ttgaggcagg gcttgcctcg caatctcata cgattgcaaa tcaaatcacc
     1921 gtggagctgg acggttcggt ggtggctgaa aaagtggctg aatatcagtt taattttaac
     1981 aagaggatgg cgtaatgagc ggttggacaa tgcctattca acaggcgagt tttaaaggtg
     2041 tgcgttttga cgtgcttgca gtggatgata gctttgagcg agcggtagtt gaacacgcct
     2101 acccttttgt aaatggggct gatttagagg atatggggct aaacacccaa actattcggc
     2161 tgcaagcggt cttttttggc tcaagctatt acacggacta tatccgctta ctttcagttt
     2221 tgcagcaaaa aggggctgat gtattagtcc accctattcg tgggcgttta ccgaatatgt
     2281 tactcgtttc ggcgaatcta cataccgatg ccgaaaatat caattatgtt gccttagatt
     2341 tgacctttaa agaggcaacc gaaatgcagc cgatttttgc ctttgaagat tcgctgattt
     2401 cgaaaatcga caagctgcta cttgatctcg aaaacctgtt tgatgatggc ttgcgttttt
     2461 gggatagcgt tggggtgttt gatctgaaat ctcgtttgct tgggctttgg ggggcgttgt
     2521 ttgcctcgtt tgaggcggtg cgtaacctgt ttgacttgga caagaaaaaa tacagcattg
     2581 cctcatcaac ctcacaacgc acctatttaa gagacggttc gggggcattg aatcagttaa
     2641 aagaaatggt ggatagcggt attcaggggc gtgctgattt aacgacactc tcgtttaaat
     2701 ctcagttact caatattact gatgcgatag ataacactca ggcgattgtg agcaaagtgg
     2761 ctagagatga gggttttaac cgctcaaaaa cggttaagtt acttggctct gatgtggttg
     2821 agcttggcat tatgcttgac cttattgcca cgactaagct caccaaagtc ttgactgagc
     2881 tggtagaaga gcgtgaggaa gagctgctaa ttggtgattt agagttaatt aaccaaattg
     2941 tgcgtgagca ttggctgaat attatcaaca aactgcgtga gcaacagaag aacactcaaa
     3001 aaggcgtgcc gagtgataag acaaaagtta tctacgagac cgcagaaaag ctgatcaaca
     3061 atatccgtaa tgttgcccat cagtttactg cacttgtgct tgcggtaatt aataaaaaac
     3121 cgcctttgac cgtgcgaatg gtaatggata gcggcacaat ccataaagta gctcacgcct
     3181 tttatgggga ttatgagcga gcggatgagc tattacgtct taatccgcat attcgccagc
     3241 caaactttat tgagcgaggc acgctgttaa attgttattg ggagtaaaaa tggaaaatga
     3301 aattgtggtg gagattgacg gctcgcagca taaaaactgg aaaagttatg atattgacag
     3361 cgatttttta attcctgctg atagttttaa ttttgagttg ggtaaatcta gcaatataga
     3421 ggttttacct aattattcgg gcaaaacggc aatagttaaa atcaatggca aaacggtgct
     3481 cactggcatt gtggatacca cacatcacac cattagcaaa agcgggcgtg ggtttagcct
     3541 aaatggacgt gataaagccg ctattttggt ggattgctct gccccgatta ccaatgtgca
     3601 agggctctct ttgcttgatg ctgttaaaaa aattgtaacc cctcttggga ttaaagaggt
     3661 gcaactgaaa gccgagaaaa acccgacttt aagcaaggtg gatattgatg tgggtgaatc
     3721 ggcgtgggag gcgattatgc ggtgtgccaa ctcggcaggt ttgcattgtt ggtttgaccc
     3781 caaaggcgtg ttaattgtcg gcggtgcgga ttacgctcaa ccgcccgttg ccacgttata
     3841 ttgcgtgaaa gagtcggggg atagccgtaa aaataacttt gttgatgcaa cactttctta
     3901 tgatgtgtcg caaagctatt cggaggtcac ttttcttgct caaaaacacg gcaaagattc
     3961 tgataatgcc aagcacgatt ttaaatgggt gtataaaaat gaggaaatgg agctttataa
     4021 accgaaaact atcgtgctgg gcgatgtgga gaacctcgaa gccttgatga aacaggcgaa
     4081 aaaacaggta tcagattggc agttggagtc atttaacctc acgattattg tacctgacca
     4141 taaaaccaaa gacggcacgt tgtggcaagc tgggcaacgt gtgcacgtgg tatgtgagga
     4201 gtatgattta gatggtattt tctttttaat ggggcgacgt tttcgactct ctcgcacggg
     4261 tggcacaacc accgaattgc ggttaaaact ggatggcgtg tggacacctg atgcttatca
     4321 agctaaagca caagaggctc gcaagcgtaa aggcaaaaaa ggacgtaaga aaaaagagcc
     4381 tgtagaatat gtaggctcgt gggagttggg aaaataatat gatgagaaaa ttagcaaaac
     4441 agactaaaga ggtggcaaaa ggtgtgcaag atagcgtgcg tgctgctttt agaggggtat
     4501 taaatttagt caagagtggc agtgatattc agcaggtaca ggtgtccgct ttagcggacg
     4561 aaactatcca agatttagag ctaatgcagc attttggttt cacttccgtg ccacctgccg
     4621 gcacgcaagc ggttgttatc cccttaggtg gtaaaaccac gcacggtatt attgtggcga
     4681 ctgaaaacgg ctcgtttagg gttaaaaatc taaaaaatgg tgagacggct atttatgatt
     4741 caagcggctc aactatcata ttaaaaaacg ggcgagtgat tgatattgag tgcgatagct
     4801 ttaacattaa atgcaagcaa tattccgtca ccgcaagcgg tggagcaaat tttaacaccc
     4861 cgaaactaga aaccgaccag cagtttgtgt ctcaagggca gatcagcggc aacggtggaa
     4921 tggtagttca aggcggaagt ggtgcaagtt tcactggctc attaacacaa caaggaggca
     4981 gtatctcaac tgatggtgat gtggtggcat cgggtaaatc actggttaca catcaacaca
     5041 acgaacaagg cgatggcaga cctacctctg ctccaattta acttacaagc taatttacaa
     5101 gcggtctaat tttgcaaatt ttttgtagaa aaagaccgct tgccatttgt ggaagtctct
     5161 ccccgttact cctgtcttta atgtctctac catagcaata tggacagaga aatcagcccg
     5221 ctcactcggg actatacaag tgaaaatata actacactgc aaaatgccgt gtatatcaga
     5281 ctaactactc cgaaaggctc gtggtgggca gatgggcgtg taggttctct gctccatctt
     5341 attcaacgtg agaaagattt aagccgtgtg gggctattag ctcaacagta cgccgaagag
     5401 gctttgcagc cgattattga tgacggacga gccaaaagca ttacggtgac acacgagcag
     5461 ccaaaagacg gctcgttaaa tcttttaatc tccgttattg ataatcgtgg ggttaaattt
     5521 gagtttaaac accctgtaaa actggtttag gtggttttta aaatgtatca aatcccaacg
     5581 cttgaagatg ttagaagaga aattctgcga gatattcaat ctttagagcc aactgctgat
     5641 attgaggtgg attcggatta ttttgttcgt gcctccgctt tggcaagctg tgtggtgggg
     5701 ctgtatgctc accaaaactg gattgttcgt cagtatttcc cagatacggc agactccgaa
     5761 tacctcgaaa tgcacgctaa attgcgaaat ctttaccgta aaaatgcgac ctatgcgagt
     5821 ggttcgttga aagtttttgg tactgctggc tcagtaatca atgagggctt gcaagttaaa
     5881 tttggcgagc gtttttatgt aaccaaaagc tcggacgtta ttggtgatga tggctctgca
     5941 acggtgcgag tgatttcaat ggcaacaggg gcatcaagca atgttaaatc tgaaagtaaa
     6001 gcacaactga ctgctgctcc tgctggcgta tcaagcgatt gcttgttatt gcctgatgtg
     6061 acaggcggga cggaagtgga aagcgatgcg gcattgctgg ctcggttatt agagcagatt
     6121 cgccgaccac cgtcaggcgg gaataaaaat gacttccgcc aatgggcaga aagcgttgat
     6181 ggcgtaacct ctgcgtttgt ttatccatta cggcgtggcg agggtacggt agatattgca
     6241 atcacctcag gtgataccgt gccaagtgat gaaatcgtgc gagcaactca agcttatatt
     6301 gatgaagtcc gccctgttac ggctaaatcg gtttatgtac ttaagccagt tgaaaaacgg
     6361 gtcaatttta acatcaaagt gcaacttgat acggatacga cgcttgatgg tgtaaaagcg
     6421 gaaatcgaaa acgctttaga gaattatttt ttatcactca aacctgctga caccttaatt
     6481 atttcgcaaa ttgaggcagt aattagtgat ttagtgggcg tagtagatcg tgagattgta
     6541 cagccaacca gaaaccaaac gattgatgcc taccgtgaaa tgggctggtt cagattgggt
     6601 gatgtaactg tggagttgat gtgatggtaa cgattaactc taaacacggc aaggcattgg
     6661 gcggtttatt accgcctgta tcgtatgacc caaacggcag atggctagcg ttatcccttg
     6721 aagttgaggg gagagagcta gaccgcattg atgcgagagc caagacttta atcgatgccg
     6781 ttgatgtatc aacaggcatt tttattgatg attgggagcg ggtttgtggc ttaacggcga
     6841 atagctcact accgcttgaa acccgaattg agcgtgtgat tgcaaagctg aatcagttgg
     6901 gtggattgtc gataggctat atcactcaag tggccaaaga gcttggatat tgcatcaaaa
     6961 ttagtgagcc acaacccttt attgctgggc taagccgagc tggggatatg ttatggcata
     7021 aagacattat gtggacattt tttgtggata tttgcaaccc cacagatgat tacaagcgtt
     7081 ttagagcaag tgtgtcaatg gctggcgatg cgttaatggg acgatacaaa gacccaattt
     7141 tagaaagtct acttgaagag gtaaaacctg catttagccg tgtgtgggta agatatttag
     7201 gagatattga atgaaacaag tgatgaatcc gattaatacc ccaacacagc gttttaaaga
     7261 tggcaaccct gccactggtg aatatggcac gattgtgact gctgaatttt tgaataacgt
     7321 ccaagattcg gtcattaaca cccaacaaga attgcacagt gtacttgctg aagcaggaat
     7381 cgaagcaaat gacgaacaag ttaatcaggt ggctaaagca atcaagaaaa ttgcgggcga
     7441 tgctactcgt gataatttta acgcattagc caaccctgat ggttacaaac acatcggtcg
     7501 ctgcaaatcg gttgcggagt tacgtactat
//
LOCUS       DANLXK010000112         7512 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.113, whole genome shotgun sequence.
ACCESSION   DANLXK010000112 DANLXK010000000
VERSION     DANLXK010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7512
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            60..479
                     /locus_tag="PXD88_002084"
     CDS             60..479
                     /locus_tag="PXD88_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL6281624.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            550..2106
                     /locus_tag="PXD88_002085"
     CDS             550..2106
                     /locus_tag="PXD88_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL6281625.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2164..2421)
                     /gene="rpsQ"
                     /locus_tag="PXD88_002086"
     CDS             complement(2164..2421)
                     /gene="rpsQ"
                     /locus_tag="PXD88_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL6281626.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2421..2612)
                     /gene="rpmC"
                     /locus_tag="PXD88_002087"
     CDS             complement(2421..2612)
                     /gene="rpmC"
                     /locus_tag="PXD88_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL6281627.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2612..3022)
                     /gene="rplP"
                     /locus_tag="PXD88_002088"
     CDS             complement(2612..3022)
                     /gene="rplP"
                     /locus_tag="PXD88_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL6281628.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3036..3743)
                     /gene="rpsC"
                     /locus_tag="PXD88_002089"
     CDS             complement(3036..3743)
                     /gene="rpsC"
                     /locus_tag="PXD88_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL6281629.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3763..4095)
                     /gene="rplV"
                     /locus_tag="PXD88_002090"
     CDS             complement(3763..4095)
                     /gene="rplV"
                     /locus_tag="PXD88_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL6281630.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4106..4381)
                     /gene="rpsS"
                     /locus_tag="PXD88_002091"
     CDS             complement(4106..4381)
                     /gene="rpsS"
                     /locus_tag="PXD88_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL6281631.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4412..5233)
                     /gene="rplB"
                     /locus_tag="PXD88_002092"
     CDS             complement(4412..5233)
                     /gene="rplB"
                     /locus_tag="PXD88_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL6281632.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5252..5557)
                     /gene="rplW"
                     /locus_tag="PXD88_002093"
     CDS             complement(5252..5557)
                     /gene="rplW"
                     /locus_tag="PXD88_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL6281633.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5554..6156)
                     /gene="rplD"
                     /locus_tag="PXD88_002094"
     CDS             complement(5554..6156)
                     /gene="rplD"
                     /locus_tag="PXD88_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL6281634.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6172..6801)
                     /gene="rplC"
                     /locus_tag="PXD88_002095"
     CDS             complement(6172..6801)
                     /gene="rplC"
                     /locus_tag="PXD88_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL6281635.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6827..7138)
                     /gene="rpsJ"
                     /locus_tag="PXD88_002096"
     CDS             complement(6827..7138)
                     /gene="rpsJ"
                     /locus_tag="PXD88_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL6281636.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2198 a         1591 c         1376 g         2347 t
ORIGIN      
        1 actgataaac acataacaaa attcatttat attaatggag attcaacacg gctgaacaaa
       61 ttgttccttc aaatgaagct gttttaaaag cagtccacga tactttagtt atttcaacaa
      121 ctgatttaca aggtgttatt acttacgcta acgacctttt ctgcaaatta accggtttta
      181 cccgtgaaga attaattgga caaccgcata atatcgtacg ccacccagct gtaccaaaag
      241 aagtttataa agatatgtgg gatacaatcc aagccggtaa aatctggaca ggtatcgtac
      301 caaactgcgg taaaggcggt gtagtttatg tggttgatac caccgttcaa ccaatgtttg
      361 atgaaacagg caaaattaca ggctatatca gcgttcgccg tgtaattaat gatttaatga
      421 ccaactttga agcagtagaa tcagcaaaag aaatctttga tgacttctac ggtgaataat
      481 taaaaaacaa tgattgcgtg taaaagatga tctcttttac acgcaatttt ttattttcga
      541 ggagtttgta tgtctctcat tccccatatc cacattgctt atggttcgga gtctggtaac
      601 gcagaaaagc ttgcccaaca attagctatc caaccctttt tacttcccta ctcacccaca
      661 ctttctacat taaacgaaac cgatttaagc caattatctg ccgagagttt attgcttatt
      721 gtaaccagct cctttggtga tggcgaacca cctgaaaacg ccgatgaatt tgcagaaaaa
      781 ttggaaaatt tgaccgcttg taatctgcaa tatgcgatat tcgggctagg tgatattact
      841 tatgataaat tctgtggcta tagcaaacaa ctagattcat tattacaaca aaaacaagct
      901 aaagctgtga ttgcaagggt tgatgccgat ttaaactatc aagaaatttt taaacaatgg
      961 ctacccctag tggagcaggc attacattca acaaacaaag aaacgatcca acattccctt
     1021 tctgttcaag cttacggcga ggaaatggca taccaagcag aagtgttgga aattaagcat
     1081 ttggcaaact caagccctgc ggtgtatcac attcgtttat cattaaaaga gagcggtatt
     1141 ttctatcaag caggggattt aatttatgtc aaagtgcagc aaccagacag actattaaat
     1201 gaatatgcag aatggtttaa cgatcaaaat gcagttgcat tactacgcca taaagaactc
     1261 cgactactaa gtaaaaatgt actgcgtgat attcaaaaaa tttgcggcag taatgaactc
     1321 aaagatttaa ctaaaatttc caataaaaaa gcattggaac aatatgtcta tgggcgggat
     1381 ttattagacg tattacgcga ttttgaccca aacaaaagcg tgacattagc cgatttagag
     1441 ccaattttat ctaacttagc cgcacgagcc tattcaatta gctcttgcgg taaaactcac
     1501 cctgattatg ttgatttatg tatccgccac gtttcgtatc atttaaacgg tagagattat
     1561 caagggactg caagtgggta tttatccgaa ttacaagcgg gcgattttgt ctcgattttt
     1621 gcaaatgcca atccgaattt ccgtttaccc gaaacattaa ccgctccggt ggtgatgatt
     1681 ggctcaggta ctggcattgc tccgcatatc gcatttttac aagcgttaga gcagcaatat
     1741 cagggggttg aaagctattt attcttcggc gagcgttatc gtgataaaga ttttctgtat
     1801 caaacggaac tggaaaatta cttagcaaaa ggcaccttaa ctcagctgtt tactgctttt
     1861 tcacgtgatc aggcagagaa gttttatgtg caagatgccc tatcgcaaca agcagagtta
     1921 gtttggcatt taattcagca aggggcttat ttctatattt gtggtagcaa agcaatgagt
     1981 aaagcaatag atgcggaact catcaaaatt gcagatcaaa ttggaggcga tccttatatt
     2041 gatgatttca ataatattat tgcaaaattg gtcgcagaag gccgattaat gcgagatgta
     2101 tattagcaaa tgaaaaaaac taaaaaccca gcaaaagctg ggtttttatt taatcatagt
     2161 tcattaagca acaactgctt tctcaactac acgaactaaa gtccaagatt tagtttttga
     2221 aataggacga cattccttaa tttcaacaac atcacctaat ttagcttcat tgttttcatc
     2281 gtgtacatga agtttagtag tacgacggat aaacttaccg tataacggat gtttaactgt
     2341 acgttcgata gcaacaacaa atgatttatc cattttgtcg ctaaccactt taccttgtac
     2401 tgtacgaatt ttatcagtca ttattcaccc gccttttcgg ttaatacagt tttaacttgt
     2461 gcaatactac gacgcacttg ttttaactgg tgggtttgtt gaagctgacc ggtggctgct
     2521 tgcatacgca atttgaattg ttcacctaaa aggttcacta actcaccatt cagctcttca
     2581 acacttttat tacgtagttc ttgagctttc attacatcac cgtcttagtt acaaatgtgg
     2641 ttttgaacgg aagtttagct gccgctaatg caaacgcatt gcgtgcaact tcttcagaaa
     2701 caccatccat ttcatagaga actttacccg gttggattaa ggctacccag tactcaacgt
     2761 tacctttacc tttacccata cggacttcta atggtttttc agtaattggt ttgtctggga
     2821 acacacggat ccagatttta ccttgacgtt taaccgcacg gctcatcgca cgacgagcag
     2881 cttcaatttg acgagctgtt aaacgaccac ggccaatagc ttttaaacca aatgaaccga
     2941 agctcacttc tgtgccaccc gcgataccac ggttacggcc tttgtgtact ttacggaatt
     3001 ttgtgcgttt tggttgtaac attcagtgat tctccttatt tacgaccttt gccacgtggc
     3061 gcctttttag gctgtgccgc tggttctttt tcagattcaa tcactgcagc cattccacca
     3121 agaatttcac ctttgaagat ccacactttt acgccgatta cgccgtaagt agtgtgagct
     3181 tcagcagtac tataatcgat gtctgcacga agcgtatgta gaggtacacg accttcacga
     3241 taccattctg agcgagcaat ttctgcacca cctaaacgac cgctaacttc aactttgata
     3301 cctttagcac ctaatttcat cgcgttttga actgcttttt tcattgcacg acggaacatc
     3361 acacgacgtt caagttgaga agcgatgcta tctgcgacta atttcgcatc tagctctggt
     3421 tttttcactt cagcgatgtt gatttgagct ggaacgccag cgattttcgc aactgcgttg
     3481 cgtaattttt caacatcttc acctttttta ccgataacga tacccgggcg agctgtgtga
     3541 atagttacac gaatgctttt tgcaggacgc tcaatagtga tgcgtgatac agaagcgttc
     3601 gctaactctt tgtttaaaaa tttacgtact ttgaagtcgc cgtctaagtt atcagcgaaa
     3661 tcttgtgtat tcgcgaacca agtagagttc caaggtttaa caatacctag gcgaatacca
     3721 ttaggatgta ctttctgacc catttgttat tctcctactt aattaacgat ctgacacaac
     3781 cacagtgatg tggcttgtac gttttaaaat acgatctgca cgaccttttg cacgtggcat
     3841 tacacgtttc atgcttggac cttcatcaac gaagatttta gcaactttaa gatcatcgac
     3901 atctgcaccg tcattatgct ctgcgtttgc aatagctgac tctaatactt tcttaacaag
     3961 cgtcgctgct tttttgttag tgaaagttaa gatttctaat gctacagaaa cttttttacc
     4021 gcgaattaaa tcagcaacta agcgagcttt ttgggcagaa gtacgagcgt aacgatgttt
     4081 agcaatagtt tccatctttt acctcttatt tcttagcttt cttatctgcg gcgtgaccgc
     4141 ggtatgtacg agtcggtgca aattcaccta atttatgacc gatcatttcg tcggaaacat
     4201 aaacaggaac gtgctgacga ccattatgga ctgcgatggt caaaccaatc attgatggaa
     4261 tgatcattga acgacgggac caagttttaa ttggtttttt atccccgctt tccaccgcct
     4321 tctctacctt cttcaacaag tgtaggtcaa ggaaaggacc tttcttgagg gaacgtggca
     4381 ttggtgttta ccttttagtt aatgaattaa attatttgcc acgacgacgt acgatgaatt
     4441 tatcagtacg tttgttgtga cgagttttct tacctttggt ttgaacgccc caaggtgtaa
     4501 caggatgttt accgaagtta cgaccttcac caccaccgtg tgggtgatct accgggttca
     4561 ttgcagtacc acgaacagtt ggacgaatac ctctccaacg gtttgcacct gctttaccaa
     4621 gaacgcgaag catatgctct gagttaccta cttcaccaat ggttgcagta cactcagcta
     4681 atactttacg catttcgcct gaacgaagac gtaaagttac atagttacct tcacgggcaa
     4741 tgatttgaac gtaagcacca gcagaacgtg caatttgacc acctttacca ggttttaatt
     4801 caacgttgtg tacagttgta cctactggga tgttacgcat tggtaatgcg ttacctactt
     4861 taatcggagc tgaagcaccc gcttgaattt gatcaccagc agttaaacct tttggtgcta
     4921 aaatatagcg acgttcacca tctttataaa gtactaatgc gatattcgca gaacgatttg
     4981 gatcgtattc taaacgctca acaacacccg gaatgtctaa tttattacgt ttaaaatcaa
     5041 ttaaacggta gtgttgtttg tgaccgccac caatgtgacg agttgtgata cgacctaagt
     5101 tgttacgacc accagtttta gatttagtat ctaaaagtgc tgcaaaaggt ttacctttgt
     5161 gaagctcagc gtttacaact ttaacaacgt gacgacgacc agcggaggtc ggcttacatt
     5221 taacgatagc catttatttt atctcctctg attactctgc cgcaccttca acgaagtcaa
     5281 gcgattgacc ttcttgaaga gttacataag cttttttcca gtcactacga cgaccaactt
     5341 tagcaccacg gcgtttagtt ttacctttaa ctactacggt acgaacagaa tcaactttta
     5401 cttcaaaaag ttcttcaact gcatttgcaa tctcaacttt gtttgcatct aatgcaactt
     5461 tgaatacgat tgtattgcct ttttctgcgt tgtttgtcgc tttttcagag atatgtggtg
     5521 ctttaagcac gtttagcaaa cgttcttgtt gaatcatgct aacatctcct caatttgttt
     5581 tactgcatct acggttacaa ccactttatc gaaagcaatt aagctaactg ggtcaatacc
     5641 ttgcacatca cgcacatcaa ctttatataa gttgcgtgct gctaagaata aattctcatc
     5701 tacgtttgca gtaatgataa gagcgtcatt taacgccata tcttttaatt tttgtgctaa
     5761 tactttagtt tttggtgcat cgatttcgaa tttctcaaca accactaaac ggtcttgacg
     5821 aactaattca gaaagaatgc ttttgattgc accacggtac attcttttgt tcactttttg
     5881 gctgtgatct tgtggtttcg cagcaaaagt tacactaccc gaacgccaaa ttggtgattt
     5941 aatatcacca gaacgtgcac ggcctgtacc tttttgacgc caaggttttt tacctgaacc
     6001 agacacttca gcacgagttt tttgagcacg agatccttga cgagcacctg ctgcataagc
     6061 aacaactact tggtggatta atgcttcatt gaactcacgt ccgaaggtag tttcagaaac
     6121 agttagtgcg tttgcaccta caacttgtaa ttccatctct atctcctaga cttatgcttt
     6181 aactgccggt tttacgataa catcaccatt agttgcacca ggaacggcac ctttaactaa
     6241 taataattta cgctcaacat ctacacgaac aacttcaagt gattgaacgg ttacacgctc
     6301 tgcacctaag tgtcctgcca tttttttacc tttaaacaca cgacctggag tttggttttg
     6361 accaatagaa ccaagtacac gatgtgataa agagttaccg tgagttgcat cttgagtacg
     6421 gaagttccaa cgtttaacac caccttggaa gcctttacct tttgatgtac cagtaacatc
     6481 gactttttta acatcagtaa agatgtcaac attgatttct tgacctaaag tgaattcttc
     6541 accttcagta gtacgaaatt cccataaacc gcgtccagct tcaacacctg ctttcacgaa
     6601 atgacctgct tctggtttag ttacacggct agctttttta gagccagtag taacttgaat
     6661 tgcagagtag ccatcgtttt caagggtttt aacttgagta acacggttgg cttcgatttc
     6721 gataacggta actggaatag acacgccgtc ttcagtgaaa acgcgggtca taccaacttt
     6781 acgaccgatt aaaccaatca ttgtaataac ctcttaaaat tcccaattaa cctagactaa
     6841 tctgaacgtc aacgccagca gctagatcta aacgcattaa tgcatcaaca gttttttctg
     6901 ttggttcaac aatatcaact aaacgtttgt gagtacggat ttcatattgg tcacgtgcat
     6961 ctttattcac gtgtggagaa atcaatacag tgaaacgttc tttacgagtt ggtaaaggaa
     7021 ttggaccacg aacttgtgca ccagtacgtt tagctgtttc tacgatctcc gcagtagatt
     7081 gatcaattaa acgatgatca aatgctttta agcggatacg gattctttgg ttctgcatta
     7141 gaccagagct ccaattaaaa aatttagcta ataaaaaaac caaactacca cttaacaaat
     7201 tagttaaggg agctcagtta aacctatata gttccaaaat taggaacatt gtatacacta
     7261 caatatctgt agtgccattt gataaatgat tacatcaaat gtctttagat acctaaagct
     7321 ttgctatcat actcgtttca tttcccttat gcaagtaatt tttgtttttt atattgacaa
     7381 taatttgatt cgataaaact tctaaagata cacaatattt ccaatacttc atttgaagtg
     7441 gctcaaataa attgtattta tgcatttttt tattcaaact tttcgagcca cttcacaaat
     7501 ctaaaaaatc ct
//
LOCUS       DANLXK010000113         7505 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.114, whole genome shotgun sequence.
ACCESSION   DANLXK010000113 DANLXK010000000
VERSION     DANLXK010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            20..1483
                     /gene="ubiD"
                     /locus_tag="PXD88_002097"
     CDS             20..1483
                     /gene="ubiD"
                     /locus_tag="PXD88_002097"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL6281637.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            complement(1568..2392)
                     /locus_tag="PXD88_002098"
     CDS             complement(1568..2392)
                     /locus_tag="PXD88_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6281638.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDY
                     LTNWRLAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            2519..3364
                     /locus_tag="PXD88_002099"
     CDS             2519..3364
                     /locus_tag="PXD88_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL6281639.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            3821..6763
                     /gene="rne"
                     /locus_tag="PXD88_002100"
     CDS             3821..6763
                     /gene="rne"
                     /locus_tag="PXD88_002100"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL6281640.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            6909..7469
                     /locus_tag="PXD88_002101"
     CDS             6909..7469
                     /locus_tag="PXD88_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281641.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
BASE COUNT         2425 a         1588 c         1649 g         1843 t
ORIGIN      
        1 atcgaaaaat atgaccgcta tgaagtataa aaatctccgt gaatttctcg atttccttga
       61 gtctcagggt gaattagtcc gtattcagca agaaatcgat ccttatttag aaatgacaga
      121 aatcgccgac cgcaccttac gcaaaggcgg gccggcatta ctgtttgaaa acccgaaagg
      181 ctatcaaatg tcggtgttgt gtaatttatt cggcacgccc aaacgggtag ctctgggaat
      241 ggggcaagaa gataccaaag ctctgcgtga gctgggcaag ttacttgcct ttttaaaaga
      301 gcctgaacca ccgaaagggt ttaaagattt gatcgggcaa ctgccacaat ggaagcaaat
      361 tttaaatatg ccgcctaagg tactgagcaa agccgattgt cagcaagtgg tgatttcggg
      421 tgatgaggtt gatctctaca aattaccgat tatgcactgt tggccgggcg atgtcgctcc
      481 actggtcact tgggggctga cgattacgca agggccttac aaaaaacgcc agaatttagg
      541 catttatcgt cagcaactta tcggcaaaaa caaactgatt atgcgttggc tttcccaccg
      601 tggcggtgcg ttagacttcc aagagtggaa agccgaaaac ccgggtaaac cgtttctggt
      661 gtcggttgcg attggtgcag atccagccac tattttagcg gcagtcaccc ctgtgccgga
      721 tacgctttcg gaatatgcgt tcgcagggct gttgcgaggg cataaaaccg aagtggtcaa
      781 atctatttcc aatgagttag aagtgccggc aagtagcgaa attgtgctgg agggctatat
      841 cgatctggaa gaaaccgcat tggaaggccc ttatggcgac cacaccggct actacaacga
      901 gcaagagtat tttccggtat ttaccgttac ccatattacg atgcgaaaag atgcgattta
      961 tcattctacc tacactggca gaccacctga tgaaccggca gtattaggtg aagcattgaa
     1021 tgaagtcttt attccgattt tgcaaaaaca gtttccggaa attgtcgatt tctacttgcc
     1081 acctgaaggc tgttcttacc gtttagcggt agtgacgatg aaaaaacaat atgccggaca
     1141 cgctaaacgg gtgatgatgg gagtttggtc gttcctgcgt caatttatgt acaccaagtt
     1201 tgtgattgtg tgcgatgacg atgtgaacgc tcgagattgg aaagatgtaa tttgggcgat
     1261 caccacccgt tgtgacccgg ctcgagatac gacactgatt gaacacacgc cgatagatta
     1321 tctcgatttt gcctcgccaa ttgcagggtt aggctcaaaa atggggattg atgccaccaa
     1381 taaatgggcg ggtgaaacca cccgagaatg gggaacaccc atcgaaaaag atgacaatgt
     1441 ggtgaaacgc attgatgaga tttgggattc tcttggcatt taaggcaaca tttaaccgct
     1501 tgtgcaacat aacaagcggt taaatttttt gacattttta ccattcggct atttgtttct
     1561 catcaggtta cgactcttta ttttgagcca gccactcggt aggcgaaagc cctaattccc
     1621 gcataaagac acggctgaga gcagcattat ggctataacc gacttgctct gccaccaatg
     1681 ctactggtat ccctttttgt aataaatgct gggcaaccgc tagtcgccag ttagtgagat
     1741 aatccatcgg tgaaaccccc atcgtttgtt taaaataagc agcaaagcgt gagcgagaca
     1801 ttaatgccac atttgccaac tcctctacat tccaatctcg ctctggtgca ttgtgaatag
     1861 ctaacagcac tttccccagt tgcttatctg ccaagccttt taacaaacct gtttgaatat
     1921 accctttttc caaacattgg cgggcaactt tcaaggtaaa ataggcacat aaatgatgaa
     1981 tcattgcctg ataaccacac cctttctgat tcacttcact aaaaatttga tcggctaata
     2041 cccccaattc cggatactgt gccaactcta agatcacaat attgtgcaag gtatgagtta
     2101 atgggttgcg aatccctttg ccaaaatcaa aattaataca aaatatatct aacccactat
     2161 catctaacgg gtgcaaacta tgcaaaatat tggttggtga aaaaataatc gctgggcgtt
     2221 caatcgtaat cgggcgttcg gcagcctgat ttaaaataaa acgtccctga cgaacgaaat
     2281 gtaaatagcc tttattctct tcattaaaac tcccgatttg gcataactga cctagatgaa
     2341 ataaatccgt gcgaaactga aattgggtaa aaagatgagt caaactatcc acattaagct
     2401 ccttgggtaa agaattgaga cgaacggtta aaacaggaga aatgcgatca ctataatagc
     2461 aacccgttcg gtaacgcaag ttatcattac aatttgtata tctattaatg aggataaaat
     2521 gatgtcacag gaacaatttg aagaaatcaa ccaagaacgc cgtcaagccc ttaaccacgg
     2581 ctctcgtatt gcaatggcag ccagtgtatt aggtgcatta ggtattgcat caacagcaaa
     2641 tgcaaaacaa gccagtgcag aaaaatcacc ttatgccgag ccggaacaat acggtttaaa
     2701 acgccatgga atgaccattg atccaaaacg tgtggcatta gtggtagttg atccacaaat
     2761 tgacttccta ggcccgaaag gcgtgatgtg gggcgtgtta ggtgactcaa ttaaagaaaa
     2821 caacactgta gctaacattg aaagcttatt taaagcagca aaagcagtcg atatgccaac
     2881 ctttgtttcg ccacactact attacccgac tgatcacaaa tgggaatttg gttcaccggg
     2941 tgaacacttt atgcacgaca gcggaatgtt tgcgagaaaa ggtcaataca ccatggaagg
     3001 ctttgaaaat tcaggtgcag actttatgcc tgagtacaaa ccatacattt ttgatggcaa
     3061 aacagtgatt acctctccac acaaaatctt tggaccggaa accaatgact tagtgttgca
     3121 attacgcaaa cgtaaaatcg accaagtaat tttagccggt atggctgcca acttatgtat
     3181 tgattcacac ttgcgtgaat taatcgaaca aggttttgaa gtaacagtgg tgaaagatgc
     3241 aaccgcaggg cctcgtattc ctgaaggtga cggctacctt gcagcattaa ccaactaccg
     3301 tattatcgca aatgacctct ggaccactga agaagcagtg aaaaaaatga cggcaaaagc
     3361 ataatattcg ctttacaagc ggttaaattt agctcttttt ttgcaaattt aaccgcttgg
     3421 atttcacgct tatctccagc actcacacta aatctcatta tttttcctta tcaccccatt
     3481 cattttcatt atattcatct ccacaacaaa taacagctac catacaacaa ttaccttgcc
     3541 tttttcaggg ttaaaatgcg ataatgactc gttatttttg gcttgaaaaa gcaatagaaa
     3601 attgcaaaaa ataaagcaaa aataaccgct tgtaatagag ataaacaagc cttaagtgat
     3661 tgattttgca gtttctttaa gacaagacaa agtaaacgta agacaaccat caatgcacta
     3721 tcgggaatga agacagtcgt gagatagaca ttaaatccat tcccttatta atgggtcaaa
     3781 atgaccgtgt aagacaaaaa caaaataatg agaaaacaca atgaaaagaa tgttaatcaa
     3841 tgcaactcaa aaagaagagt tgcgtgttgc cctcgttgat gggcaacgct tatttgactt
     3901 ggacattgaa agcccgggtc acgaacagaa aaaatccaat atctacaagg gtaaaattac
     3961 ccgtgtcgaa ccaagccttg aagctgcatt cgtagattac ggtgcagaac gccacggctt
     4021 cctaccttta aaagaaattt cccgagaata cttcccgtca gactatgtgt ttaacggtcg
     4081 cccgaatatc aaagatatta ttcaagaagg gcaagaagtg attgttcaag tcagcaaaga
     4141 agagcgtggt aacaaaggag cagccttaac cacctttatt tcgcttgcgg gcagttactt
     4201 agtcttaatg ccgaacaacc ctcgtgccgg tggtatttcc cgccgtattg aaggtgatga
     4261 gcgtttagaa ctcaaagagg ctttagactg cttagatgta ccggaagacg tgggcttaat
     4321 cgttcgtacc gccggtgtcg gcaaatcgcc ggaagagtta caatgggact taaaagtctt
     4381 gttacaccac tgggaagcga ttaaaaaagc ggcggaatct cgcccagctc cgttcttaat
     4441 tcaccaagaa agtgacgtga ttgtgcgtgc aattcgtgac tatctacgcc gtgatattgg
     4501 cgaaatctta atcgacaaca aaaaagtgtt cgagaaagcc aaaaaccaca ttcgccttgt
     4561 tcgcccggat ttcatcaacc gtgtgaaatt atacgaaggc gaagtaccac tattcagcca
     4621 ctatcaaatt gaatcgcaaa tcgaatcggc attccaacgt gaagtgcgtt taccttccgg
     4681 tggctctatc gttattgatg taacagaagc cttaacagca attgatatta actcctcacg
     4741 ttcaacccgt ggcggcgata ttgaagaaac cgctcttaac accaacttag aagcggcaga
     4801 tgaaattgcc cgtcagttac gtttgcgtga cttaggtggt ttgattgtga tcgactttat
     4861 cgatatgaca ccggttcgcc accaacgtga agtagaaaac cgtattcgtg aggcgacacg
     4921 ccaagaccgt gcgagaatcc aatttgcccg tatttcccgt ttcggtttgt tagaaatgag
     4981 ccgtcagcgt ttaagcccat cattaagtga ggcttcatcg catatctgcc ctcgctgtca
     5041 gggaactggt aaagtacgtg ataatgaatc aatcgcactg tcaatcttac gtttattaga
     5101 agaagaggca atcaaagaaa acactgcaca ggttcacacc attgtgccgg tgcaaatcgc
     5161 cagctactta ctcaacgaaa aacgtaaagc gatttccagc attgaaaaac gccacgatgt
     5221 acaaattgtt gtagtaccgt ctgaaagtat ggaaacgccg catttcagcg tatatcgcct
     5281 gcgtgaaaat gaaattactc caacgttaag ctacgattta accaagcatt acgaagctcg
     5341 tcatgaagaa gaacacccac atcatcacca tcaagaagat gtgctggtta cccgtaacga
     5401 gccggtgatt acggtagagt cagtgttaca aagctcggag ctgaatctcc aaccttcgcc
     5461 aacaccaacc gaaccaccaa aaccatcgct gttaagccgc ttaattgcga ccattaaagg
     5521 ctggtttagt gaagaaaaag tggaagaaaa accgaagccg aaagcacgca atcagcgtga
     5581 gcgtcgccaa cgccgtgaac gcccgaaccg taatgctaaa gcggaaaatc aagagcgtaa
     5641 aactccgcaa gctcaaacta ctccagcgga agaaaaaccg atgcgtagcg agaaaaaagc
     5701 acgccgagcg gtagtggaag aagtttccgg tgtaaccgag caagagagtc gtagcaactc
     5761 ccgtgaggtt caaactgaac gtcgccaacg ccgtgatcta cgtaaaaaag tgcgtatcga
     5821 aacacaagaa gtagaagtgg aaaatctaac acctgctgtt gaggaaacgg tggcaaaaca
     5881 agttgaaaat gtgcaaaaaa atcaacaaat tcaaccgctt gcaacccaag aagtacctgt
     5941 tgaaacagct cctgaggtag aaacaacgaa cgaaggacgt gaaaataacc gccaacgccg
     6001 tttacctcgc catttgcgtg tgggcaatca gcgtcgtcgt gaaaatcaac gcaatcaggt
     6061 tatttctcct atgcctctaa cttcagctgt tgcttcgcct gagcttgcga gcggtaaagt
     6121 ttgggttcag gttacctcta ctgtcaaagt agaggaaaaa gcatcattct tatctgttga
     6181 tcaaatgctt gaacagcaag aaaatcagct tgttgagaca gagaaaaaat cagaagagaa
     6241 gaagcttcat acagttagtc cgctaggtgg ctttgtagca caagcaacta accgtgattt
     6301 ggttaaggag aagcaagaac agctttccaa accgaaagaa gaaaaagttg cttctgaaga
     6361 cgtaaaacca gtagaggtaa aagagcatat tgctccattt ggtagtgttg ttgctcagca
     6421 ttctgaacgt gatttagtta aagagaaaaa tgagcgagtc agtaaattcc aatcgcaagc
     6481 aacggttgca ccagcgattg tggaagaggt tactaacccg attgaagtgc caaaatcaac
     6541 ttacgaaagc gattatcgat ttaacggcag attaggtaca ttctctcgtg ttgagcatac
     6601 ccaagccgct atgaccattg cttctgcacc aagtgacaag cttgaagtag tcgaaattag
     6661 ccaatggcaa aactctaaat actatttcta tggcaaaggg tttggcggat ataccagcgc
     6721 agtgagccaa gtgcagtcag cgcctcgttc aaccaatggt taagtacaat taattggttt
     6781 aaatgcctat tagttataac taataggcat ttttttatca aagtatgaac tttctatcaa
     6841 tttttctgcc taagtaaacg cactttatta caaagtgcgt tatttttagt ttatttaagg
     6901 aactcggtat gaaaaaatca tttttatcat tattagtgtt aggtacaact atggcacttg
     6961 ctgcttgtga tcaggcaaaa gaagccgcgc aatcaactac agacaaagcg gttgaagtaa
     7021 aagaagctgt agctgaaaaa gctgcagaag ttaaatcggc tactgaagcg aaggttgaag
     7081 agttgaaagc ggcagcaaat gatgcagctc aagcaacagc agataaaaca gaagaggcaa
     7141 aaaaggcagt ggcagagaaa gccactgagt taaaaaccac aactgaagct aaagtggaag
     7201 aactaaaagc agcagcaaat gatgcagctc aagcaacaac agataaaaca gaagaggcaa
     7261 aaaaggcagt agcagagaaa gctgctgagt taaaagccac aactgaagct aaagtggaag
     7321 aactaaaagc agcagcaagt gatgcgactc aagcaacagc agataaagca gaagaagcta
     7381 aaaaggcagt agctgagaag gcagcagaag tgaaagttga gacagaaaca aaagttgaag
     7441 aaatgaaaaa agcgattgaa agcaaatagt gctttttagt ttctctgtag ctatcgaaac
     7501 acgct
//
LOCUS       DANLXK010000114         7488 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.115, whole genome shotgun sequence.
ACCESSION   DANLXK010000114 DANLXK010000000
VERSION     DANLXK010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7488
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            115..1911
                     /locus_tag="PXD88_002102"
     CDS             115..1911
                     /locus_tag="PXD88_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
                     /protein_id="HDL6281642.1"
                     /translation="MDFLTEILLFLKDQVLNKAPFLLGIVACLGYILLKKDTSTIIKG
                     TIKTIVGFMIVQAGSGFLVTNFKPVIDGLAKYHQLTGAVIDPYTSMQSTIQTMGENYA
                     WVGYAVIGALFLNILLVVFRRLTGIRTIMLTGHIMFQQAGLVAVFYMIIGASMWETII
                     YTSVLMALYWGISSNIMYKPTQAVTGGAGFSIGHQQQIASWIAVKLAPKLGDKDDTVD
                     KMKLPNWLNIFHDSISATALVMTIFFGIILLSFGLDNLKELAGKTNQFMYILEMGLKF
                     AVAIQIIVTGVRMFVAELSEAFKGIAERLIPNSVLAIDCAAIYAFSPNAMVFGFMWGA
                     IGQFVAVGGLLAVGSPVLIIPGFIPMFFSNATIGVFANQFGGWKAVMKICFVMGIIEV
                     LGSAWVIQMLASQGTTFNGWMGMADWALFFPPILQGIISIPGFFFVIVAAAMVYMFFA
                     SKQLRAEEAEAAARGITLEQLDGYGLDEVKAEPKAEAVVQQAVENAENSANPIRILAV
                     CGSGQGSSMMMKMKIKGYLDKRGIPNIMDSCAVTDYKGKLSEVDIIVSSKHLANEIEV
                     PEGKAVLGVQNMLNPNSFGDELVELINQHNAK"
     gene            1991..3052
                     /locus_tag="PXD88_002103"
     CDS             1991..3052
                     /locus_tag="PXD88_002103"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL6281643.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3040..3504
                     /locus_tag="PXD88_002104"
     CDS             3040..3504
                     /locus_tag="PXD88_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL6281644.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3535..3651
                     /locus_tag="PXD88_002105"
     CDS             3535..3651
                     /locus_tag="PXD88_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL6281645.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3667..4134
                     /locus_tag="PXD88_002106"
     CDS             3667..4134
                     /locus_tag="PXD88_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6281646.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4189..4869
                     /locus_tag="PXD88_002107"
     CDS             4189..4869
                     /locus_tag="PXD88_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL6281647.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4937..6079)
                     /locus_tag="PXD88_002108"
     CDS             complement(4937..6079)
                     /locus_tag="PXD88_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL6281648.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6089..7468)
                     /locus_tag="PXD88_002109"
     CDS             complement(6089..7468)
                     /locus_tag="PXD88_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL6281649.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
BASE COUNT         2200 a         1737 c         1615 g         1936 t
ORIGIN      
        1 ctcacaaata attaaaaata atctttttta atctttttct agcgtttatc attaattccg
       61 acaacttctc tggagttttt tagttctatt aatctctcaa caaagaggcc ccctatggac
      121 tttttaaccg aaattctcct tttcttaaag gatcaagtgc tgaataaagc acccttctta
      181 ctaggtatcg tagcttgctt aggttacatt cttcttaaaa aagacacttc tacgattatt
      241 aaaggcacaa ttaaaacaat tgtcggtttt atgattgtac aagccggttc aggtttctta
      301 gtaaccaact ttaagccggt tattgatggc ttagccaaat atcaccaact taccggtgca
      361 gtaattgacc cttacaccag tatgcaatcg accattcaaa ccatgggcga gaactacgct
      421 tgggttggtt atgccgtaat tggggcgctg ttcctcaata ttctattagt ggtgttccgc
      481 cgtttaaccg gtatccgtac cattatgctc accggtcaca ttatgttcca acaagcaggc
      541 ttggttgcgg tgttctatat gatcatcgga gcgtcaatgt gggagaccat tatctacacc
      601 tcagtgttga tggctcttta ttggggtatt tcgtctaata ttatgtataa accaacccaa
      661 gcggtaacag gcggtgcagg cttctcaatt ggtcaccaac aacaaattgc ttcttggatt
      721 gcagtcaaac tcgcaccaaa acttggcgat aaagacgata ctgtagataa aatgaaattg
      781 cctaactggc tcaatatttt ccacgacagt atttctgcaa ccgcattagt aatgaccatc
      841 ttctttggaa tcatcttact ttcattcggt ttagataacc tcaaagaact tgctggcaaa
      901 accaaccagt ttatgtacat tcttgaaatg ggcttgaaat ttgcggtggc aattcaaatc
      961 attgtaaccg gcgtacgtat gtttgtagct gagctttcag aagccttcaa aggtattgct
     1021 gaacgcttaa ttccaaactc agtattagcg attgactgtg ccgctatcta cgctttctcg
     1081 ccaaatgcga tggtattcgg ctttatgtgg ggggctatcg gtcaatttgt ggcagtaggc
     1141 ggcttgcttg cagtaggctc accggtgctt attattccgg gctttatccc gatgttcttc
     1201 tctaacgcaa ccattggtgt gtttgcaaac caatttggtg gttggaaagc agtaatgaaa
     1261 atctgttttg tgatgggtat tattgaagtg cttggctcag cttgggttat tcaaatgctt
     1321 gcttcacaag gcacaacctt taacggttgg atgggtatgg ctgactgggc attgttcttc
     1381 ccaccaatcc tacaaggtat tatcagcatt ccgggcttct tctttgtaat tgtggcagca
     1441 gcaatggttt atatgttctt cgcatctaaa caacttcgtg ccgaagaagc agaagcggca
     1501 gctcgtggca ttacacttga acaattagac ggctacggct tagatgaagt aaaagcagaa
     1561 ccaaaagcgg aggcagtagt acaacaagcg gtcgaaaatg ccgaaaattc tgcaaaccca
     1621 atccgcattc tagcggtgtg tggctctggt caaggctcat caatgatgat gaaaatgaag
     1681 atcaaaggct atctcgacaa acgtggtatt ccgaatatta tggattcctg tgcggtaact
     1741 gattacaaag gcaaattaag cgaggttgat attattgtct ccagcaaaca tttagccaac
     1801 gaaatcgaag taccggaagg caaagcggta ttaggtgtac aaaatatgct aaatccaaac
     1861 tcatttggtg atgaattagt tgagctaatc aatcagcata atgcaaaata agtaagttta
     1921 ggggtgaata atcaccccta tctatgctaa agattgtaaa aactcacttc atcaaacgag
     1981 gaattatcca atgaaaaaaa tcttatccac cctgtttatg ctctccgcgg ttagcgttgc
     2041 cgttgccaaa gaggtaaaca ttaaactact tggtacctca gacgttcacg gacgtgttgt
     2101 gccgtggagc tacggggcag acgtggaaga caaatccggc tcattcgccc aaattgcaac
     2161 ctatgtcaaa gaggtgcgtg ccaaccacaa aaatgtgttg ctgtttgata ttggcgatgc
     2221 gattcaagac aaccaagtcg aagagttcgc taaaacctta gacaaagcga aaaacaatcc
     2281 cgtgccgaaa gtgctgaatg caatgaatta cgacatcttc attctcggca accacgaatt
     2341 taacttcgga atgccgaatt tagatgcgat tttaaaagac atcaacgcca aaattctcac
     2401 tgccaacttc tatcacaaag acggcaaacg ctacgttgag ccaactacca tcattgaacg
     2461 tgatggcgta aaacttggga ttatcggctt aaccacccca atgtcggcta tttttgaaaa
     2521 agacaccggt catttagacg caatgaagtt cacttcgccg attgaagagg cgaaagccca
     2581 aattgccgat ctcaaagcca aaggcgtgga cgccattatt gtgctggcac atatggggat
     2641 tgagaacgaa aacaacattc ccgacaccgg cgtggcggat ttagtgaatg cagtggacgg
     2701 tattgatgta attatcgccg gccatatgca taaagatgtg ccgagtgaaa ctatcaaaaa
     2761 taccctgatt accgaaccgc accgctacgg cacagtggtt tccgaagttg atcttgcctt
     2821 tgatgtgaat gacaaaggcg aagtgaaact actttctaaa accgccaaaa ccgtaccggt
     2881 gaagaaactc gcaagcgatc cggaaatcga aaaaatttac caaccgtatc acaatgaact
     2941 gcgtgcctta aacaacgtca aaatcggtga aactgcacaa gatttaatcc cacaaggcaa
     3001 aatcacggtg tatcgattgc tttctcgcaa gacaccggaa tgtcctcatt gatccacgat
     3061 gtgcaacaac attacagcgg tgcagacgta gtgagttttg catttgacta cgaaaccgtg
     3121 cgtttagaca aaggcgacat caagaaaaaa gacatcatct acaactaccg ctatgccggt
     3181 ggcgatgtga gcatgtatga gctaaccggc aaacagctta aacagtatat ggaatggtca
     3241 gcggattact tcgacaccat tcaagccggt gacaaagact accgctacaa cgctgtgcgg
     3301 ggtaaatcta aatacgttac cttcgaccta ttcggcggcg taagctacaa catcgaccta
     3361 cgcaatccaa gcggtagcaa aattgtcgat ctaaaactgg caaacggcag tctaatcacc
     3421 gatgacggca aatacaaagt gggaatgaac tcctaccgct ttggtcagct caccaaaaaa
     3481 ggcggcatct gggaaggaca gtaaatcccc gtgatttggg aatccaaagt cgccatgggg
     3541 gctgaaaaag gcacaatcca aaatatgctg attgattaca tcaccaacgt caaaggcgga
     3601 aaaatcgaag gcaaatcgca taaccgctgg gcgattatcg gcttaaatta acgaaaggga
     3661 aacactatga acttaaaaca atctcttatt gaaaataact ctattttgct caatcaatca
     3721 gcggcgaatt gggaagacgc aatcaaaatc ggcactgatt tattagtcaa agccggtacg
     3781 attgaaccac gctattacga taatattgta agcaaaatca aagagatggg gccttatatt
     3841 attcttgcac cgggcttggc aatgcctcac gcccgtccgg aagaaggtgt gattaaaacc
     3901 tctttcgctt tagtgacttt tgacaccccg atttattttg agggcgaaga tgagccggtt
     3961 cacgttatgc taacccttgc agggagtgac tctgatcagc atatgcaagg cttggtagaa
     4021 atcacccaag tgctagatga cccagagagc gacacaggtg ttgatttaga taaaatccgc
     4081 cgctgtaaaa cggctgaaga agtgtatgca gtaatcgatc aggcattagc ctaatattct
     4141 acaagcggtt caaaaacatc aatattttgc aaatagagga atacaattat gtccaaacca
     4201 ttattacaaa ttgcccttga ttctctttca ctggaaaaag cggtggcgga tgcaaaacaa
     4261 gcagaaaacc aagtcgaaat tattgaatgc ggtactattc ttgcttttgc tgagggtatg
     4321 aaagccgttt ccaccttgcg tgtattgcac ccaaatcaca ttattgtgtg cgacttaaaa
     4381 accaccgatg gcggtgcaat tttagctaaa atggcatttg aagccggtgc cgactggctc
     4441 acggtttcgg ctgcggctca ccctgcaacc aaagcggctt gcaaaaaagt ggcggacgaa
     4501 tttaacgctg ctcacccgga gctaaaagtg aaaaaagaga ttcaaattga aatctacggc
     4561 aactggacgg tggaaaaaga tgccaaagag tgggtagaat taggggtaac ccaagcgatt
     4621 taccaccgct cccgtgatgc ggaactagca ggtaaaggtt ggacaacgga agatgttgag
     4681 ttaatgaaac agctttctga cttaggcatt gaattatcta tcaccggcgg tatcgtaccg
     4741 gaagatattc acctgttcaa agagatcaaa aacgccaaag cctttattgc aggccgtgct
     4801 ttagtcggtg aaaaaggcaa acaaactgcc gaagccattc gtgtggagat tgataaatac
     4861 tggaactaat ccggcattga aacccaataa aaatggcgtt ctctcaaccg gaacgccatt
     4921 ttttatctca ttttttctat tcttgcaagg ccgatatttt ccacaatctc gctacatttt
     4981 cggcagttga aatcaggttc tctttgcctg attttaacac cgcttctaaa ttgctgacct
     5041 gtcgaataat cggaaatacc gcatcaatgc cgtgttggta caccacaggg taatcttctt
     5101 tcaatgagcc aactatcgca atcaccggct tgccaaactg cttagcgact ttcgccaccc
     5161 caatcggggt tttaccggcg atagattgag cgtccattcg cccttcccct gtcaccacca
     5221 aatccgcatc ggcaagtttc tcagcaagat cggttgcctc aagaataatt tgcacgccgg
     5281 aacgtaatgt tacgttaggc agtagcagta aaccaccgcc cattccaccg gctgcaccgg
     5341 caccggcttt ctcggcaatc tcaatgccta attgggattt tacggtttcg gcaaaatgca
     5401 acagggcgtg gtcgagcatt ttaaccattt ccggtgtagc tcctttctgt ggcccaaaaa
     5461 ttgccgaagc ccctcgctcg ccacacagcg gattatcgac atcgcaagca acctcaaatt
     5521 ccacttgctt taagcgtgaa tccaaaccgc ttaaatcaat ctgctgaatt tggcttaatg
     5581 cctcgccacc aaagccgatt tcccgctgtt cggcatttag aaatttcgct cctaaggctt
     5641 gtagcattcc gacaccgcca tcgttagtcg cactgccgcc aatgccgaga atgatttttt
     5701 ccacccctaa atctaaggcg gctttaatta actgccccgt gccgtagctg gtggtaacca
     5761 gcggatttcg ttgctccatt ggcactaaat gcaagccact tgccgccgcc atttcaataa
     5821 aggcggtttt ttgatccccc gacaagccaa aaaagccctc cacctcattt gcaagcggtg
     5881 caattacgct gattttttgc aaactgccgt gagtggcatc aaccagcgac tgtaccgagc
     5941 cttcgccacc gtctgccatc ggtacgagct gatactccgc ctcagggaaa acacgggcaa
     6001 aaccctgttg aattgcttga gccacttcta atgcggtcaa actctcttta aatgaatccg
     6061 gtgcaatcac aattttcatc gtcaatcctt agagtaaaat caatgaaagc agataaaccg
     6121 tgagcatacc caccacaccc ataatgaaag ttagggtagt ttgcgtacga tagccttgtt
     6181 gcggagtcag tttagtaaag tttgttacca cccagtagta gctgtcattg gcgtgggaaa
     6241 cgcacattga gccagccgca atcgccatta cggttaaggc tgccgccatt tcactggtta
     6301 gccctaaggc gttcattaat gagtccggtg cgttgaacat tcccataatg gaggcggtgg
     6361 tgataattgc caccgttgag ctgccttgtg cggtttttaa aattgccgaa atcaggaacg
     6421 ggaagaaaat ccctgctgta ctgataatat gagcgttttg cttgatgtaa tccacaaagc
     6481 cggcttgagt aatcacgtta cctagcacac caccggcggc ggtaataaag agaattgggc
     6541 cgactaattt cagggtatca ttggttaagc tgtcaaattc cgccatttta ccgcttgaaa
     6601 ccagtaggaa aatagcgaag atcaccccaa ttgctaacgc aataatcggg ttgccgacaa
     6661 attgtaggaa tacgccgaaa tcgccactta caccggcaat tttggcaatc gagccgatag
     6721 ccattaagat aatcggcata aaaatcgggg caaagcttaa aaacccactt ggtaatttgc
     6781 cgtattgttt gatcagatct tcatagcttt ggctgattac ttgatccgct tgagcttctt
     6841 ccatcacgct gacttgtttg ccaacatatt tggcaaagaa gtaactggca atcaacacag
     6901 gaatcgaaac cacaaagccc attccgatca caagcaggag attatggctt aaaccaacag
     6961 caccggctgc tgcaatcggg cccggtgtcg gaggaataaa gacgtgggag gcatataaac
     7021 cggcacttaa cgccaccgcc attcccaccg gattggcaag aatttttttg cgaatagctt
     7081 cacgaatcgg gtttaacacc acaaagccgc tatcacagaa cactgggata ccaaccaccc
     7141 agcccataat caacattgcc agttcagggc gtttttgccc caccactttt accaccatat
     7201 cggctaattt gagggctgca ccggtttttt ctaaaatcgt gccgataatc gccccaaaaa
     7261 taatcacgat accgatactt ttgaaggtat tactaaaacc ttcgcccaca atagttggaa
     7321 ttttggcaag cggtaaacct gccactaatg caagggctat cgaaatcgac attaaggcta
     7381 agaacgggtg aactttccac ttcgcaatca tataaatcat tatgatgata gcgaccagaa
     7441 agatcagaat aagtgcaata cctgacataa taagtctcct cattgtag
//
LOCUS       DANLXK010000115         7474 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.116, whole genome shotgun sequence.
ACCESSION   DANLXK010000115 DANLXK010000000
VERSION     DANLXK010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7474
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(40..1095)
                     /locus_tag="PXD88_002110"
     CDS             complement(40..1095)
                     /locus_tag="PXD88_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6281650.1"
                     /translation="MGRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYRTHGKTEISL
                     GTNRNEAFIKAAQLNIERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCKIKNLL
                     LFFNDAPLEEITPQHIREYMTWRKDTPGSANNEFSMFSHIWQYAREWGYTNLPSPNIG
                     MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGY
                     LHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIR
                     EQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLGHTSVQMTKTYIRKA
                     PIVTPIKESVPSSKHQS"
     gene            complement(1055..1330)
                     /locus_tag="PXD88_002111"
     CDS             complement(1055..1330)
                     /locus_tag="PXD88_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL6281651.1"
                     /translation="MEQPTEFLTKDELADLTGYRQKKRQIEWLRERHYIIQDENKYKP
                     LVLYKDVYGHPRQQYPEAQSTGKWKSPAYLMGVKNGKTTQTTESLLT"
     gene            complement(1420..1926)
                     /locus_tag="PXD88_002112"
     CDS             complement(1420..1926)
                     /locus_tag="PXD88_002112"
                     /inference="COORDINATES: protein motif:HMM:NF024784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL6281652.1"
                     /translation="MRILPRNENYAATENGEIFSFLSNKILKPRPLKNGYLRVQLVDE
                     NGVKDYLIHRLVCETFHGYPDLHVNHKDRDKTNNRPENLEWCTRSENMLHCSRLGGFS
                     KQSERMKKMNIESCSVPVAAITLDGKLFKKYTSMTSAGKDGFSHSKISLCIQGKRKTH
                     KGYIWQKL"
     gene            complement(1904..2500)
                     /locus_tag="PXD88_002113"
     CDS             complement(1904..2500)
                     /locus_tag="PXD88_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL6281653.1"
                     /translation="MPLSITANLTKAVQLKHQGEALSGGSETLVVHGTQDPIISQNKA
                     HCLGRNNGQENVLFEVKGAEAVRISEIQDKTPTLKARMGTGGNNIPCIALAGNTIGRQ
                     PQNDGNGNVFDESGVSYMLTRTDVHAVSAGTTIRKLTPTECERLQGFPDGWTKITYRG
                     KSAEECPDSPRYKAIGNSMCTNVMKWIGERLSAYLTSQ"
     gene            complement(2421..3740)
                     /locus_tag="PXD88_002114"
     CDS             complement(2421..3740)
                     /locus_tag="PXD88_002114"
                     /inference="COORDINATES: protein motif:HMM:NF024795.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HDL6281654.1"
                     /translation="MNNIIKFTYGSICSGIEAASVAWHDIGTPLWFSEIEPFPCAVLA
                     HRFPDVPNLGDMTALPEKILNRKIPAPDVLVGGTPCFTAGHMVLTDKGYMPIETLSVG
                     DLVVTHKGQLKPILRVGSEIKPVGKLTAVGLPESIVCTPEHPFYAQKWQTINTKRNGK
                     YHRKTIISKPEWIEAHKLEGYQWVSLTDFSVMPYGGFHSKLTDDEVLLIAGYYLGDGW
                     IRRWKGKNKKAVVISVNKEKYRKFSLSFAKLPHHITTENNSVIKITICDTELADFLYS
                     QFGEKAGGKTIPAWCLSHSFRSKIFEGYMITDGSFRNGVYTANSISKSLAYGIAALSQ
                     TLGYISSVSKVTVAPTKEIQGRIVNQNDYYQMRAFLQSTSRKSRLDENRLLRSVQSFE
                     ITGNEVVYNIEVADDNSYILNNAVVHNCQSDKGGTVKASGGGFEWRE"
     gene            complement(3737..4642)
                     /locus_tag="PXD88_002115"
     CDS             complement(3737..4642)
                     /locus_tag="PXD88_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL6281655.1"
                     /translation="MQFQEHNNRKKADKFAEYITGEALRRYVAEKVKQYARNNVSVFD
                     GAAGSGQLEQFVRPTSFTAVEVQSESCDVLRHNFPTAQIYNQSFFLYPNGEPCDCVIM
                     NPPFSLKFKDLSQAEQAQIQSEFPWKKSGVVDDIFVLKGLANSHQWGFFILFPGVGYR
                     QTEKRFREEVGNQLVELNRIQNAFEDTPIEVLFLVVDKTKTTDDCSRELIDCAGGQIQ
                     QICADKWKIRPDHWESIQPPPPPQEEIKPLELEAFAREQAIERIVGEVRLSKLIAEFF
                     EPELRRTFNAFIDDICVAVQAEKIV"
     gene            complement(4876..5553)
                     /locus_tag="PXD88_002116"
     CDS             complement(4876..5553)
                     /locus_tag="PXD88_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL6281656.1"
                     /translation="MSNQVQFPVFNFNSSAVRVIIDPNQEPWFCGADVCRILGYVNES
                     LTLQKHCKENGVSKRYLTDKMQRQQKAIFINEPNLYRLIIKSRKPEAEKFEAWVFEEV
                     LPQIRKTGKYALQNNQQNLPLAPPPKKYSFDFTEDELQSLIWAWFAFVRGIHTFRYIY
                     PMFQKLGSNIAPEIYGQGFEYSHTAQSAHKILERITKEFDYDPMTNWRVLKHVRGFDP
                     AFKKPTF"
     gene            complement(5801..6640)
                     /locus_tag="PXD88_002117"
     CDS             complement(5801..6640)
                     /locus_tag="PXD88_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL6281657.1"
                     /translation="MANSVMIVQGVEVKVTARDGEDYISLTDMCKAFGDSDQLIKNWL
                     QNKNTIEFLQVWEELNNPNFNLVELHQIKNNIGLNRFVMSVKKWTATGAIGLVAKAGR
                     YGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQQEANESKLEWSVKRILSKANYR
                     IHTDAIKAHIIPALLNTKQHTFVYSSEADILNQALFGQTAKQWKDRNPNLKGNMRDHA
                     TVEQLTVLAALESQNALLIEQGYSQEERLAMLNRLAIQQMSSLLQTRAIEELKEKPLL
                     IEE"
     gene            6870..7247
                     /locus_tag="PXD88_002118"
     CDS             6870..7247
                     /locus_tag="PXD88_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281658.1"
                     /translation="MFSLLRDALTFAAMFTGILFPAIIHKYDLSLGTQIQLLSFVPAF
                     FVLCHFLIKRKYQRDFDRLSYLSAVVCVAMCAGVGAFSQSEMIELGFKVERVLDYVTI
                     KFLLYFWSLLLLPVVLRKLFGKD"
BASE COUNT         1927 a         1512 c         1541 g         2494 t
ORIGIN      
        1 aacgttccga aaaaatgcaa aatgttccga aactgtcttt taagactggt gttttgagga
       61 gggaacactt tctttgatag gggttactat tggggctttt cgaatgtatg ttttggtcat
      121 ttgaacgcta gtatgaccta gttgttggcg agcggcttct tcacctagag aaagggcttt
      181 atctgttcct gatttagctc ttagatcccg aaattggaat gccattattt catttgcgta
      241 ttccgggtta ttcttgaccg cttgttcccg aatataagtg aaccttttac ctagttttct
      301 agcggttagc ttttcccctt tcttagtgct gaataagtgt gttccagtag ctttctccag
      361 cctatcttgg ataatatcag ccagttttcc cactatctca atacgtagtt tggcttgtgt
      421 tttttgctga acaatatgga gataaccatc aaaaatgtgt tctttccgga tattgaccaa
      481 atcgacagga cgttgtccgg tgatataggc gagatccatt aagtctctca tatcctgatc
      541 tgccacttca tataccatct gaaatatatt gttctcaacg taaatttcac gctttctgat
      601 agggtagcgt ttcattccga tattagggct tggtaagttt gtataacccc actctcgagc
      661 gtattgccaa atatgactga acattgaaaa ttcgttatta gcagatcccg gtgtgtcttt
      721 tcgccaagtc atatactctc ggatatgttg aggggtgatt tcttcgagag gagcgtcatt
      781 aaagaatagc agtagatttt ttatcttgca caaatctgtt tgtgctgtgc tcgctttttt
      841 ctgaggtata acttcatctc gataacgttt ggctacaagc ccgaaggtaa ttctggcagt
      901 ttggctttct ctttctatat tgagttgagc agccttaata aaagcctcat ttctatttgt
      961 gcctagagag atttccgttt ttccgtgcgt gcgatatagc caataaatga cagttttgcc
     1021 tgattttcgt gtaactgttt ttggacgtaa attctcaggt aagtagcgat tctgttgttt
     1081 gcgtggtctt cccatttttc actcccatta aataagcagg tgatttccat ttcccagtgg
     1141 attgagcttc tggatattgt tggcgggggt gcccatagac atctttgtat agcactaatg
     1201 gcttatactt gttttcatct tgaattatat agtgacgctc cctcaaccat tcgatttgtc
     1261 ttttcttttg acgatagcct gttaaatcag caagttcgtc tttcgttaaa aattcagtag
     1321 gttgttccat attctctcca aataaccccc tcatttagag ggattgagtt aaataatcgt
     1381 taagcctttg tcctatccac cgcatacaag ggacggccat tataactttt gccatatgta
     1441 acccttgtgc gttttgcgtt taccctgaat gcaaaggctg atttttgaat gtgagaaacc
     1501 atctttacct gcacttgtca ttgaggtgta ttttttgaat aatttcccgt ccagagttat
     1561 tgcggcaaca ggaactgagc aactctcaat attcattttt ttcatcctct cggactgctt
     1621 gctaaaacct ccaagtcttg agcaatgcaa catattttct gagcgtgtac accactctaa
     1681 attttcaggt cggttatttg ttttgtctct gtccttatga tttacatgta gatctggata
     1741 accgtgaaaa gtttcgcata ccagtctatg gattaaatag tcttttactc cattctcatc
     1801 tacaagctga actcttaaat aaccattctt taaaggtcta ggttttaaga ttttgttgct
     1861 caagaaacta aaaatttctc cattctcggt agctgcatag ttttcattgc gaggtaagat
     1921 acgcacttaa tctctctcct atccatttca ttacatttgt acacatcgaa tttcctatcg
     1981 ccttatatcg tgggctatca gggcattctt cggcagattt gccacggtat gtgattttcg
     2041 tccagccgtc tggaaagcct tgtagtctct cgcattcggt gggagtaagt tttcgaatag
     2101 ttgttccagc actgacagcg tgaacatcag ttcgggtaag catgtaactt acaccactct
     2161 catcaaatac gttgccgttt ccgtcgtttt gtggctgtct gccgatagta ttaccggcaa
     2221 gggcaataca agggatatta tttccacccg tccccattct tgctttcagt gttggcgttt
     2281 tgtcctgaat ttcgctaatt cgtacagctt cagcaccttt tacttcaaat aagacgttct
     2341 cttgcccgtt gtttcgacct aaacaatgag ctttgttttg gctgataatt ggatcttgcg
     2401 taccgtgaac aactagcgtc tcactcccgc cactcaaagc ctccccctga tgctttaact
     2461 gtaccgcctt tgtcagattg gcagttatgg acaacggcat tatttaagat gtagctgttg
     2521 tcatctgcca cctcaatgtt ataaacaact tcatttccag ttatctcaaa ggattgcacg
     2581 cttctcaata atctattttc atcaaggcga ctttttcttg atgtcgattg gaggaacgct
     2641 cgcatttgat aatagtcatt ctgattgaca attcttcctt ggatttcttt tgtcggagca
     2701 acagttactt tggaaacaga tgagatatat cctaaggttt gggataatgc agcaatgccg
     2761 taagcaaggg atttcgaaat gctatttgcg gtataaactc cgtttctaaa agagccatcg
     2821 gtaatcatat acccttcaaa aattttactt ctgaaagaat gagataaaca ccaagccggt
     2881 atagtttttc cgccggcttt ctcaccaaat tgcgaataaa gaaaatcagc aagttcagtg
     2941 tcacaaatag tgattttaat taccgaatta ttttcggtag taatatgatg aggaagtttg
     3001 gcaaaagaaa gagaaaactt ccgatatttc tctttattta cagaaataac aacagctttt
     3061 ttatttttgc ctttccatct tcttatccag ccatcaccaa gataataacc ggcaattaga
     3121 aggacttcgt catcagtcag tttgctatga aaaccaccat agggcataac tgaaaaatca
     3181 gttaatgata cccattgata gccctctagc ttatgagcct caatccactc aggtttggaa
     3241 atgatagttt tcctatggta ttttccattc cttttggtgt ttatcgtttg ccatttttga
     3301 gcataaaaag gatgttcagg ggtgcaaacg attgattcag gtaagccaac agccgttaat
     3361 tttccaactg gttttatttc actgccaaca cgcaaaatag gttttagttg tcctttatga
     3421 gtaacaacta aatctccgac agaaagtgtt tcgattggca tatatccttt atccgttaaa
     3481 accatatgcc cagcggtaaa gcaaggcgta cccccaacca acacatcagg agcaggaatt
     3541 ttacgattga ggattttttc aggtagggcg gtcatatcgc ccaagttcgg cacatcgggg
     3601 aaacggtgag caagcactgc acacggaaac ggctcaatct cgctgaacca taacggcgta
     3661 ccgatgtcgt gccacgctac acttgctgcc tcaatgccgg agcagataga tccataggtg
     3721 aattttatta tgttgttcat acaatcttct ccgcctgcac cgcaacgcaa atatcatcaa
     3781 taaatgcgtt aaaagtgcgg cgtaattctg gttcaaaaaa ttctgcgatc agcttggata
     3841 agcgaacctc gccgacaatt cgttcaatcg cttgctctcg ggcaaacgcc tctaattcaa
     3901 gcggttttat ctcttcttgt ggcggtggtg gcggttggat actttcccaa tgatcaggtc
     3961 taattttcca tttatcagca caaatttgtt gaatttgccc accagcacaa tcgattaact
     4021 cccgagagca atcatcggtc gttttggttt tgtctaccac caagaatagg acttcaatcg
     4081 gggtatcctc aaaggcgttt tggatgcggt tgagttctac aagttgattg ccaacttctt
     4141 ctcgaaagcg tttttctgtt tggcggtagc caacgccggg aaagagaatg aaaaatcccc
     4201 attggtgact atttgccagt ccttttagga cgaaaatatc atcaaccacc ccagattttt
     4261 tccacggaaa ttcggattga atttgtgctt gttcggcttg gcttaaatcc ttaaatttaa
     4321 gggaaaatgg cggattcata atcacgcaat cgcacggttc gccgttagga tagagaaaga
     4381 agctctgatt atagatttga gccgtaggga aattgtgccg taacacatcg cagctttcgg
     4441 attggacctc taccgcagta aaagaggttg ggcggacaaa ttgctccaac tgcccagaac
     4501 ctgccgcccc gtcaaaaaca gaaacattat ttctggcata ctgcttgacc ttttcagcaa
     4561 cataacggcg tagagcttca cctgtgatgt attcagcgaa tttgtcggct tttttgcggt
     4621 tattgtgttc ttggaattgc atttttcctc caaaaaataa ccgcttgcgg aacaagcggt
     4681 tgggttaatt agcgttgagc tgtacaaatt ttgccatcgc agtcgttgcg taactctaga
     4741 tggtcagcag caactgcaaa ggcggttaaa aagagtatga tttttgcgta tttcatcgtc
     4801 taatcctcaa aatttgggtg caggaaaccg ccgcttgatg tttcgcaagc ggtcgggttt
     4861 tataattttt tgtgattaga acgttggctt tttaaatgcc gggtcgaaac ctcgaacgtg
     4921 tttgagtact cgccagtttg tcatcgggtc gtaatcaaat tctttggtaa tccgttcaag
     4981 aattttatga gccgattgtg cggtgtggct atattcaaaa ccctgtccgt agatttcagg
     5041 tgcgatattt gagccgagtt tttgaaacat cgggtagata tagcggaaag tgtgaatgcc
     5101 acgcacgaaa gcgaaccaag cccatatgag gctttggagt tcatcttcgg taaagtcgaa
     5161 agagtatttc tttggcggtg gtgcaagcgg taggttttgc tgattatttt gcaacgcata
     5221 tttaccagtc ttgcgaattt gtggcagaac ttcttcaaat acccacgctt caaacttttc
     5281 cgcttctggt ttgcgtgatt tgataatcag tcggtatagg tttggttcgt tgatgaagat
     5341 cgctttttgt tgtctctgca ttttatcggt gaggtatcgt ttcgataccc cattttcttt
     5401 acagtgtttt tgcagagtaa ggctttcatt tacataacct aaaattcggc aaacatctgc
     5461 accgcaaaac cacggttctt gatttggatc gataatgaca cgaacagcag atgaattgaa
     5521 attgaaaaca gggaattgaa cttgatttga cattttttgt accttttgga tttaagtatt
     5581 taatccgatc attaagtggg tgatcggggt tcaacttacc ctccaaaaga tgggcggagc
     5641 ttattcagat gtattgtata tcgctctctc gccccgatca tttcggatta aacctaaaat
     5701 ttaggtacaa aaaaaccgct ttatatcgga ggcggaaacc gcttttggaa agtaagtgtg
     5761 gttatcttag ccgaaagggc ggttttttgt caattagatt ttattcttca attagcaatg
     5821 gcttttcttt cagttcttca atcgctctgg tttgtaacag cgagctcatt tgctgaatag
     5881 ccaaacggtt gagcattgcc agtcgctctt cttggctgta accttgctca attagtaggg
     5941 cgttttggct ttccaatgca gcaaggacgg taagttgctc aacggtagcg tggtctcgca
     6001 tattgccttt caggttcgga ttgcggtctt tccactgttt tgccgtttgt ccgaagagag
     6061 cttgattgag aatgtccgct tcgctggaat aaacgaaagt atgttgtttt gtattcagca
     6121 atgccggtat gatgtgagct ttgatggcat cagtatgaat gcggtagttc gccttgctta
     6181 aaatgcgttt tacgctccat tcgagcttac tttcgttcgc ttcttgctgt ttgagtcgtt
     6241 ggaactcttt gatgagataa agcttaaatt ctggactgag ccaagaacca aattcgagag
     6301 caatatcttt gtgggcgtaa gtgccgctac catatcgtcc tgcttttgct actagcccaa
     6361 tagctcccgt tgcagtccat tttttgacag acatcacaaa gcggtttaag ccgatgttgt
     6421 ttttaatttg gtgtaattcc accaaattaa aatttggatt attcagctct tcccaaactt
     6481 gaagaaattc aatggtattt ttattttgaa gccagttttt aatgagctgg tcactgtctc
     6541 caaaagcttt gcacatatca gttaggctga tgtaatcctc accatcacga gcggttactt
     6601 tgacctccac gccttgtaca atcattacgc tatttgccat ttcgtttctc cgtttttagg
     6661 tacaaaaaaa gccgttggtg gacggcttga aagtgcggtt atcttaatcc gaattggggg
     6721 cggtgtcaat tagattaatc cgtataagta tggaaccaag ttaaagagta gaactacaac
     6781 acataaccaa aaaatgaaat tcatatcttg ctcagttttg attttgtgta aaatacgctt
     6841 aagtttgttt ttcatttagg aaacctttaa tgtttagttt attgcgtgat gctttaacct
     6901 ttgctgcaat gtttacaggg attttatttc ctgcaattat tcataaatac gatctatcac
     6961 ttggtacaca aatccaatta cttagctttg ttccagcttt ctttgtgttg tgccattttc
     7021 ttattaagcg aaaatatcaa cgtgattttg acagactttc gtatttatct gctgtggttt
     7081 gcgtagcaat gtgtgcaggc gttggagcat ttagccaatc agaaatgatt gagctaggtt
     7141 ttaaagttga gcgtgttctt gattatgtga ctatcaaatt cttactctac ttttggagct
     7201 tgctgttatt gccagttgtg ctaagaaaat tgtttgggaa agattagttg gttatttaaa
     7261 gagagctatt tgtcaaacct caatatctat ttttgcgatc tgcatcgaaa aaataaattt
     7321 tcgttctgac agtaaaacgc tttcgtagta atctcataaa aaacataagg ggaacactat
     7381 gaaagagctt ttcaaacaat ggctaatcaa tcaggactcg ccattcatta atagctgtgg
     7441 cgttgagtgt attttgtcaa aagttgatga ccgg
//
LOCUS       DANLXK010000116         7462 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.117, whole genome shotgun sequence.
ACCESSION   DANLXK010000116 DANLXK010000000
VERSION     DANLXK010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7462
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            4..504
                     /locus_tag="PXD88_002119"
     CDS             4..504
                     /locus_tag="PXD88_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL6281659.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     HRRLTV"
     gene            792..2186
                     /gene="fumC"
                     /locus_tag="PXD88_002120"
     CDS             792..2186
                     /gene="fumC"
                     /locus_tag="PXD88_002120"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL6281660.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2313..2423
                     /locus_tag="PXD88_002121"
     CDS             2313..2423
                     /locus_tag="PXD88_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL6281661.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2528..3778
                     /gene="lysA"
                     /locus_tag="PXD88_002122"
     CDS             2528..3778
                     /gene="lysA"
                     /locus_tag="PXD88_002122"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL6281662.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            3792..4421
                     /locus_tag="PXD88_002123"
     CDS             3792..4421
                     /locus_tag="PXD88_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL6281663.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4492..5937
                     /gene="tldD"
                     /locus_tag="PXD88_002124"
     CDS             4492..5937
                     /gene="tldD"
                     /locus_tag="PXD88_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL6281664.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            6001..6882
                     /gene="prmA"
                     /locus_tag="PXD88_002125"
     CDS             6001..6882
                     /gene="prmA"
                     /locus_tag="PXD88_002125"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL6281665.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(7057..7132)
                     /locus_tag="PXD88_002126"
     tRNA            complement(7057..7132)
                     /locus_tag="PXD88_002126"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7097..7099),aa:Trp,seq:cca)
     gene            complement(7198..7274)
                     /locus_tag="PXD88_002127"
     tRNA            complement(7198..7274)
                     /locus_tag="PXD88_002127"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7238..7240),aa:Asp,seq:gtc)
     gene            complement(7285..7400)
                     /gene="rrf"
                     /locus_tag="PXD88_002128"
     rRNA            complement(7285..7400)
                     /gene="rrf"
                     /locus_tag="PXD88_002128"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2225 a         1663 c         1646 g         1928 t
ORIGIN      
        1 tatatgcaaa caatcaatga aattaaagaa gaaatctacc ctatatttga gcctatcatt
       61 ggaacaattc ggctaaaaac ctacttttcc tactacgcag tttttaagga tggattgatg
      121 attgcattgt atcaaaatgg agcaacttat ttacgtattg cgaaaaaaga tattgaatac
      181 attcgtcagt atcctaaaac ctgtatctta tgcgatgaaa aaattggtat acaaagtaga
      241 aaatttcatt atattccgca agttctcata gatgatacac caaaatttag ctcgctactc
      301 tttggaatta tagaggaact ccgaacggag aagtacaaaa taagccaaaa gcgagctaca
      361 caaatccgaa acctaccaaa tatgaattta aagttagaaa gaatgttgaa aaaaataggg
      421 attcattcca ttcatgattt tactcaagaa gggtatatgt caacttttat caaactgatt
      481 ctccaccgaa gacttactgt ttaagctaaa cggagcttta aatcaccaat atatttacac
      541 cttcacagat caacaaaaaa gggaactaat gcaagaagca aatcaagcgc tatataattc
      601 aggcctaaga aaaagattta acgccctgta gttaaataat gtgatccaaa tcataaaata
      661 taaaaaaacc aataaggaat tgcaattcgc agttcctttc tttttctttt atatgctagt
      721 atcaccttat acctctaaat tattagtgcc tactgatttt caattaatcc aacaatttag
      781 gagagcgcat catggaattc cgtatcgaaa aagacacaat gggcgaagtg caagttcctg
      841 ccgataaata ctgggcggcg caaaccgagc gttcacgcaa taacttcaaa atcgggccgg
      901 aggcatcaat gccggcggaa attatcgagg cgtttggcta tctgaaaaaa gcggctgcct
      961 atgctaatca cgatttaggc gtactagcgg tcgaaaaacg ggatttaatt gcaaaagcct
     1021 gtgatgaaat tttggcgaac aaactcgatg atcaattccc gctggtgatt tggcaaaccg
     1081 gctcgggtac gcagtcaaat atgaacgtga atgaagtcgt ggcaaaccgt gcacacgtgt
     1141 taaacggcgg caagctgggt gaaaaatcga ttattcaccc gaatgatgat gtgaataaat
     1201 cccaatcttc taacgacacc tacccaactg caatgcacat cgctgcttac aaaaaagtgg
     1261 tggaacacac cctaccttgt gtgaaacgtc tgcaaaaaac cttagcggaa aaagccgaag
     1321 cctttaaaga tgtggtcaaa atagggcgta ctcacttaat ggatgctacc ccgctcacgc
     1381 tcggtcaaga gttctctgcc tatgcagcac agttagcatt cggcatcaaa gcattggaaa
     1441 acaccctgcc acacctgcgt gagctggcac tcggcggcac agcagtcggc accggcttga
     1501 ataccccgca aggttacgat gtgaaagtgg cggaatacat tgcgaaattc accggtttac
     1561 cgttcgttac cgcccaaaac aaatttgagg cattagcgac tcacgatgcg attgtcgaaa
     1621 cccacggtgc attaaaacag cttgcggtgt cgctctacaa aattgccaac gatgtccgtt
     1681 tattagcctc cggtcctcgt tcaggcattg gcgaaattct gattccggaa aacgagccgg
     1741 gttcatcaat tatgccgggt aaagtaaacc caacccaatg cgaagcaatg acaatggtat
     1801 gtgcccaagt attaggcaac gatgtaacca tctcttttgc cggcacgcaa gggcatttcc
     1861 aactgaatgt ctataaaccg gtgatggcgt acaacttcct gcaatcggct caactgctag
     1921 gcgatgcgtg cgtgtcgttt gacgaacact gtgcagtcgg cattgaaccg aactaccctc
     1981 gcattaaaca acagctcgac caatcgctga tgttagtgac cgcattaaat actcacattg
     2041 gttatgaaaa tgcagcgaaa atcgccaaaa ctgcccacaa aaacggcaca acactgaaag
     2101 aagaggcgat taacttaggc ttagtcacgg cagaacagtt cgatgaatgg gttcgtccgg
     2161 aagatatggt tggcagcttg aaataagccc aacccttctc ttgtaatctg atttacacct
     2221 caatctaccg gtaagattga ggtgtaattt tttatagcga gggtactgat tttgttttag
     2281 aatgaagcat cattttttaa gcggaaaaac ctatgaaaaa actcatttta atcgcattag
     2341 ttactacttt aggcttaagt gcttgtgggg tcaaaggccc actctacttc cctgagcaag
     2401 cccctaaaca tgaacaaaaa taagcattgc aagcggtctg ttttggctaa aattttgcaa
     2461 atttttgtga aaaaatgacc gcttgttgcc tcttttcttt caaaatccca aacacaacgg
     2521 actttcaatg aaccattttg aatataaaaa caaccaactt tttgctgaag aagtcgctat
     2581 tgccgatatt atcgagcaat acggcacgcc agcttatgtt tactccagat ctacccttga
     2641 acgccactgg cacgcattca ataatgcgtt tggctcgcac ccacatttag tttgctttgc
     2701 agtcaaatcc aactctaaca ttgccttgtt aaatgtaatg gctcgtctcg gttcaggctt
     2761 tgatattgtc tctcaaggcg agttggagcg tgtcttagct gccggcggcg aagcctctaa
     2821 agttgtcttt tccggtgtgg caaaatcgca cagcgaaatc aaacgagcat tggaagtcgg
     2881 gattcgttgc tttaacattg aatcggtttc cgaacttcac cgcattaacc aagttgccgg
     2941 tgaactaggc aaaatcgcac cgatttcact gcgggtaaac ccggatgtgg acgcccacac
     3001 tcacccatac atttccaccg gtttaaaaga aaacaaattc ggcgtgagcg ttactcaagc
     3061 ccgtgaagtg tatcgcttag ccaaaacctt accgaatgtg aaaattaccg gtatggattg
     3121 tcacatcggt tcgcaattaa ccgaattgca acctttttta gatgcaacgg atcgcttaat
     3181 catcttaatg gagcaactgc gtgaagacgg cattgagcta caccacttag acttaggtgg
     3241 cggtttaggc gtgccttaca acggcgaaga gcctccgcat ccgaccgaat atgccaaagc
     3301 cttgctggaa aagctcaaag gctatgaaaa cttagaaatc attattgaac cggggcgtgc
     3361 cattaccgca aatgccggta ttttagtgac gaaggtggaa tacttgaaac aaaatgaaga
     3421 tcgtaatttt gcgattgtcg ataccggtat gaacgatatg attcgcccgg ctctgtatga
     3481 agcctatatg caaattacgg aagtggataa aaccttaaac cgtgacaaag ctgtttacga
     3541 tgtggtcggt ccgatttgcg aaacctcgga tttcttaggc aaacaaagag aattggcaat
     3601 ttctgaaggg gatttaatcg ctattcgttc tgccggtgct tatggggcgg cgatgtcttc
     3661 aacctacaac tctcgcccac aagcggcaga aattatggtt gatggcaacc aagcccattt
     3721 aattaaagcc cgagccactt ttgctgattt atggcgttta gaaaaattat taccttaatg
     3781 aggaagaaaa gatgaaatta tatggattaa ccggtgcttg ttcatttgta ccacacgttg
     3841 ccctagagtg ggtgaaattg cgtgccaatc aagattatgc gtttcaagct gttagccgtg
     3901 aatttattaa atcggcggaa tatctggctt taaaccctcg tggtaacgta ccattgttgg
     3961 ttgatggcga cttggccctc acgcaaaacc aagctatcgt ccactattta gacgagcttt
     4021 atccggaagc taaattattc ggcagcaaaa ccgctcgtga taaagccaaa gcggctcgtt
     4081 ggttagcttt tttcaattca gatgtgcata aatcattcgt gccactgttc cgcttgccaa
     4141 gttatgcgga aggcaatgaa acgctcacca aaactattcg ccaacaatcg gctgagcaaa
     4201 ttttagaaca actggctttt gcgaatgctc atttagaaaa tcatattttc tttggcgaag
     4261 aaatttcggt tgccgatgcg tatctctaca ttatgctcaa ctggtgtcgc ctactagggt
     4321 tggatttctc tcatctttcc caactttctg cctttatgca acgagtggag gcagaccaag
     4381 gcgtagataa tgtgcgtgag caagaaggct taaaaggtta attcaccatt gttcatttaa
     4441 gacggtagat tttatgttaa aatctaccgt cttttatttt taggaatcac catgctaaat
     4501 caggtttcaa acagcttgct tgctccaagt gggcttgaat tatcgcactt aactcaagtg
     4561 ttagatcact tctccggccg tcatattgat tatgccgatc tctacttcca actcagccaa
     4621 gacgaaagct ggagcttgga agacagcatc atcaaagaag gcggttttta tatcgaccga
     4681 gggttcggtg tgcgagccat atcaggcgaa aaaaccggct ttgcctacgc cgatcaaatc
     4741 acgttaaaac agcttgagca atgtgccgct gccgcacgtt caatcagccc aacaagcggt
     4801 caattatcgg taaaaaattt caaaaaaacg accgcttgtt ctcgctaccc ggcaatcaac
     4861 ccgctagaga ccatcagccg tgaacaaaag gtcgaattgc tccatttggt ggataaaacc
     4921 gctcgaatgg cagatccgag agtgattcaa gtgaatgcga atctctcagc ggtatatgaa
     4981 gaaatgttag tggcagcgac tgacggcaca ctggctgcgg atattcgccc gttagtgcgt
     5041 ttatctgtgt cggtactggt ggaacaaaat ggcaagcgtg aacgaggttc agcaggtgcc
     5101 ggtggtcgct ttggtttaga ttggttctta gcaccaagcg aaaccggctt tagccgtgcg
     5161 gaatcgctta ccaaagaagc cgttcgccaa gccctcgtta atctcacagc cattcctgca
     5221 ccggcaggca cgatgccgat tgttctcggt gctggctggc cgggcatttt gctccacgaa
     5281 gcagtcggac acggcttgga gggtgatttt aaccgtaagg aatcttcgct cttcagtggt
     5341 aaaatcgggc aaatggtcac ctctgagctt tgcaccattg ttgatgacgg tacggtgccg
     5401 aatatgcgag gctcaatcac ggtagatgac gaaggcgtgc cttcgcaacg taatgtgtta
     5461 attgaaaacg gcattctaaa aggctatatg caagacaaac tcaatgcccg cctgatggga
     5521 gttgccccaa ccggcaacgg cagacgggaa tcttacgctc atttgccgat gccacgaatg
     5581 accaacacct acctcaccga aggcaatcac gaatttgaag agatgattga atcggtcgaa
     5641 tacggtttat atgctcctca cttcagtggt ggacaagtgg atattacctc cggcaaattt
     5701 gtgttctcca ccgccgaagc ctacttaatc gaaaaaggca aaatcaccaa acctgttacc
     5761 ggtgcaaccc tgatcggcag cggcatagaa gcaatgcaac aagtttcaat ggtcggcaaa
     5821 aaaatggaac tcgaccccgg catcggcact tgtggcaaag aagggcaatc cgtaccagtc
     5881 ggcgtagggc agcctacagt gaagttggat aaaattacgg tggggggaag agggtaatct
     5941 ctccccgttt gcaaaatata aagaaaatat caccgcttgt agcgataaaa ggaaaacaaa
     6001 atggcttggg tacaaattcg tttaaacagt acagataaac aggctgagga aatcagcgat
     6061 tttttaaccg agattggagc ggtgtcagtg acttttatgg atagtcaaga taccccaatt
     6121 tttgaacctc ttccggggga aacccgtctt tggggaaata ccgatgtggt tgggcttttc
     6181 gatgcggaaa ctgatatgaa tcttatcgta gaagcactaa aaaccagcaa attggtggac
     6241 gaaaactttg ctcacaaaat cgagcaaatc gaagacaaag actgggaacg ggagtggatg
     6301 gataatttcc acccaatgca gtttggcaaa cggttatgga tctgcccaag ctggcgtgaa
     6361 gtaccagacc cgaatgcagt gaatgttatg ttagaccctg gtttagcatt tggcaccggc
     6421 acacacccaa cgacctcgct ttgcttacaa tggttagata gcttagattt agaaggcaaa
     6481 acggttatcg acttcggctg tggctccggt attttagcta tcgctgcact taaactcggt
     6541 gcaaaacaag ccatcgggat tgatatcgac ccacaggcga ttttagctag tcaaaacaat
     6601 gctgaggcga acggcgtagc agaaaaacta caactattct tagccaaaga tcagccaaga
     6661 gagttacaag ccgatgtcgt tgttgcgaat attctagccg gcccactcaa agagttagca
     6721 ccgaatatca tcacgctggt taaaccaaac ggcaatttag gcttatccgg cattcttgct
     6781 actcaggctg aaagtgtgtg tgaggcttat agcgaagcct ttacgctaga ccctgttgta
     6841 gaaaaagaag aatggtgtcg tattacaggc cgcaaaatct aatataagaa gccctgtttt
     6901 aaacagggct tactttttga taaattctac tactctttac ctgtcttggg aatcgttctc
     6961 cctaaattaa ttaacacaag cggtagaaat aacaggaaaa tttacaaatt acataaatga
     7021 aaaaagccga ctgaaatcag tcggctttct aaataatggc aggggcggag aggctcgaac
     7081 tcccaacacc cggttttgga gaccggtgct ctaccaattg aactacgccc ctattgatag
     7141 gtattcattt tgcacttata ggggcgaatt actattcgcc cctgcattaa agattattgg
     7201 cggaacggac gggactcgaa cccgcgaccc cctgcgtgac aggcaggtat tctaaccagc
     7261 tgaactaccg ctcctaaatt aatagattga taatgcccta ctctcacatg gcgaatcacc
     7321 acactaccat cggcgttact gcgttttact tctgagttcg gtatggagtc aggtagagcc
     7381 acagcactct ggttatcaat caaattcttt catttagtca gtttactaaa atatagttta
     7441 tactttctaa taaactcact aa
//
LOCUS       DANLXK010000117         7321 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.118, whole genome shotgun sequence.
ACCESSION   DANLXK010000117 DANLXK010000000
VERSION     DANLXK010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7321
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..2455
                     /gene="thrA"
                     /locus_tag="PXD88_002129"
     CDS             <1..2455
                     /gene="thrA"
                     /locus_tag="PXD88_002129"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL6281666.1"
                     /translation="RVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKITN
                     HLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQQ
                     VAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSYL
                     ESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACLK
                     ADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPLN
                     IPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAARV
                     FSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDII
                     KDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIEA
                     VKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDKM
                     LLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYARA
                     LKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLAA
                     GDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARKL
                     LILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEGK
                     VLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGNS
                     VTAAGIFADILRTLQGGVN"
     gene            2455..3402
                     /gene="thrB"
                     /locus_tag="PXD88_002130"
     CDS             2455..3402
                     /gene="thrB"
                     /locus_tag="PXD88_002130"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL6281667.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(3517..4893)
                     /gene="cysS"
                     /locus_tag="PXD88_002131"
     CDS             complement(3517..4893)
                     /gene="cysS"
                     /locus_tag="PXD88_002131"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL6281668.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            5049..5558
                     /locus_tag="PXD88_002132"
     CDS             5049..5558
                     /locus_tag="PXD88_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL6281669.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            complement(5650..6579)
                     /locus_tag="PXD88_002133"
     CDS             complement(5650..6579)
                     /locus_tag="PXD88_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL6281670.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(6582..7301)
                     /gene="fdhD"
                     /locus_tag="PXD88_002134"
     CDS             complement(6582..7301)
                     /gene="fdhD"
                     /locus_tag="PXD88_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL6281671.1"
                     /translation="MPVALVYNGISHTVMMATPANLEDFALGFSLAEGILNAPSELYG
                     LDVIEQENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQLEQVNQSCKIVKKN
                     NRLQNVNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLAIREDVGRHVALDK
                     LIGWYAKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTEMAVNMARENQFTL
                     LAFARKGKATIYAGEERLALN"
BASE COUNT         2140 a         1578 c         1562 g         2041 t
ORIGIN      
        1 gcgagttctt aaatttggag gcacttctct tgccaaccct gaacgcttta tgcaagcggc
       61 agagattatc gagaaagctc atttggcaga tcaagctgcc ggcgtattat ccgccccagc
      121 caaaattacc aatcatcttg tcgctattgt agataaagcg attgccggtg aatcatttca
      181 atctaacctt tctgaagcta ccgagatttt ccacaacatc attaacggct tatatgctac
      241 aaataatcac tttgctaaag aagcactgtt agccttagtg gaagcggaat taaaccaaat
      301 tcagcaagtg gctgcagaag cagctcaaac taaatcgttg tcagataaaa ttgctgccac
      361 tattcactgc cgtggtgaaa aactctctat tgcgatgatg caagcgtggt tcgaggcaaa
      421 aggctatgaa gtcactcgta tcgaccctgt tgaaaaatta ttggctcacg gcagctattt
      481 ggaatcttcg gtcgatattg ccgaatccac caagcgagtt gatgcaggtt caattccaaa
      541 gaaaaatatc gtgctaatgg ctggttttac cgcaggtaat gagcaaggcg aactggtgtt
      601 attagggcgt aacggttcag attattctgc cgcttgtttg gcagcgtgtt taaaagccga
      661 tgtttgtgaa atctggacgg acgtagatgg cgtttacacc tgcgaccctc gtttggtgcc
      721 tgatgcagta tgcttagaaa caatgagcta tcaagaggca atggagcttt cctactttgg
      781 ggcgaaagtg atccaccctc gcaccatcgg gccattagtg ccgctcaata ttccttgttt
      841 aatcaaaaat accggcaatc cggacggaaa aggcacatta attgatggca atgtggcaaa
      901 cgataatctc aaagtaaaag ggattaccaa ccttgataac gtggcgatgt tcaacgtttc
      961 aggttcagga atgcagggaa tggtgggcat ggctgcccgt gtgttctcga cgatgtcaaa
     1021 agccggtatt tcggtgattt taattaccca atcatcatca gaatatagca tcagcttctg
     1081 cgtgccggca aaatcggcag aaaaagcgtt agcggctcta aatactgaat ttgcacaaga
     1141 gttatctgaa aacttacttg acccgattga tattattaaa gatttatcca ttgtttcggt
     1201 agtgggtgat ggtatgcgta ccgccaaagg aattgcggct cgcttcttct ctgccctagc
     1261 ccaagccaac atcagtattg tggcaattgc acagggttca tctgagcgtt ccatttctgc
     1321 tgtcgtgccg ttaaacaaag cgattgaagc agtaaaagca actcacaaat cgctatttaa
     1381 cagtaaacgt gtggtggata tgtttttagt gggtgtaggc ggtgtgggta gcgaactcat
     1441 cgagcaagtc aaacaacaaa aggagttttt ggcaaagaag gatattgaga tccgtgtgtg
     1501 tgctttagct aattcagata aaatgttact caacgaaaac ggcttaaatt tagacaactg
     1561 gaaagaagat ttagaaaaag caattcagcc gtcagacttt gatgtattgc tttctttcat
     1621 caaattccac cacgtggtaa acccagtatt tgtagattgc acttcggcac aatcggtggc
     1681 gaacctgtac gcacgagcct taaaagaggg cttccacgtg gtaacaccaa acaaaaaagc
     1741 caatacatca ggttacgatt actacttaga aatgcgtgaa aacgcccgcc aaagccagca
     1801 caaattcctc tacgaaacta atgtaggggc aggtttaccg gtaattgaaa acttacaaaa
     1861 cctattagct gccggtgacg aagtagagaa atttgaaggg attttatccg gctcgctctc
     1921 tttcattttc ggcaaattag aagaaggttt aaccctttcg caagcaactt taatcgccaa
     1981 agaaaaaggc tttaccgagc cagatccacg agatgattta tccggtgcag atgttgctcg
     2041 taaactctta attcttgttc gtgaaaccgg cttaccgctt gaatttgaag atattgaaat
     2101 tgaaggcgta ttgccaaaag gcttctcgga aggaatgagt cgtgatgagt ttttacaagc
     2161 tctaccgtct ttagacgaag aattcagcaa gcgtgtagaa gctgccaagg ctgaaggcaa
     2221 agtgttgcgt tatgtgggct cgatcacagg tgataaatgc cgagttgcca ttgaagccgt
     2281 ggacgaaaac cacccacttt acaaagttaa agacggcgaa aatgcccttg cttttctcac
     2341 acgttactac aaccctattc cattattatt gcgtgggtat ggtgcgggca atagcgtaac
     2401 cgctgccggt atctttgcag atattctgcg tactttacaa ggaggagtga actaatggcg
     2461 ttacgaattt atgccccagc ttcaagtgca aatattagtg tgggttttga ctcattaggc
     2521 gctgcaatct ccccgattga cggctctttg ctcggcgatg tagttcaaat tgaagagagt
     2581 gaacaacaat ttgagctaga aagtgcaggt tattttgtac gtaaattgcc caaagaacca
     2641 caaaaaaaca ttgtctatca agcctatgtg ctatttagcg aacgcttgaa attacgtaac
     2701 ggcagtgtaa aaaatttacg cttaacactt gaaaaaaata tgccgattgg ctcagggcta
     2761 ggctcaagtg cctgctcgat tgttgcagca ttagtggcac tcaataaatt ccacgatgaa
     2821 ccgttctcca aaatggaatt actggaaatg atgggcgaat tggaaggcag aatttcaggc
     2881 tcaatccact acgacaacgt tgccccttgc tatttaggtg gcctgcaatt aatgacacaa
     2941 tcgctcggca atatttgcca acctctgcca ttctttgatg aatggtattg ggtgcttgcc
     3001 tacccgggcg tggaagtatc aaccgccgaa gcccgtgcta ttttgccgaa aagctatact
     3061 cgtcaagata tgattcagca agcccgctac ttaggatctt tcgtccatgc ttgccataca
     3121 catcaagata tcttggctgc tacaatgatg aaagacctaa ttgctgagcc ttaccgtgaa
     3181 gatttactgc cgaactttcc ggctgttcgt caaggctgta aagacttagg tgcgttagcg
     3241 gttggtattt caggttccgg tccgacaatg tttgcgatag cccctgatct cgaacacgct
     3301 caacgtttag tgagctattt agagaaagaa tatctgcaaa acaacgaagg ctttattcat
     3361 atctgtaaag tcgataatca aggagcaaga gagctgaaat agccctctcg aacaaccata
     3421 tcactaaata acttaaagga ctgactccaa taccacttgg agcagccctt tttgattaat
     3481 tttttgaaaa gtctatcact tataaacaat cgaaggctat gccttacgcc aaattgtgcc
     3541 gtttggggtg tcttcgagga caatatttat cgctttgagc ttatctcgca cttcatcggc
     3601 aaccgcccag tttttagccg ctttggcttc gttgcgttgt ttgattaagg cttcgatttc
     3661 tgccgtttca tcgtcattcg catcaccttt taaaaacgca tcggggtctt gttccagtaa
     3721 gcctagcacg ccggctaact cttttaaacg aacggctaaa ccgttggctt ttgccatatc
     3781 ttcggttttg agtttgttca actcacgggc aatttcaaat aacaccgcta atgcccccgg
     3841 ggtgttgaaa tcatcgtcca ttgcggtttt aaaggcttct acatagtgtt ctccgatggc
     3901 ttcgcccgac acatcacaac cacgcagagc ggtatataaa cgctcaagag ccgaacgggc
     3961 taaatcaagg ttgtcaatgc tgtaatctaa taacgaacgg taatgagcgg ttaagaagaa
     4021 ataacgtaac gattcggcat cgtataagcc taacatatgg cgaatgctga agaaattgcc
     4081 caaagatttc gacatttttt ctttatcaat ggtaagcatt ccagtgtgta accaataatt
     4141 gacataatcg ccaccgtgag cacagcaaga ttgtgcaatt tcgttttcgt gatgcgggaa
     4201 cattaaatcc gagccaccgc cgtgaatatc aaaatgttcg cccaactctt tgctattcat
     4261 tgccgaacat tcaatatgcc agcccggtct gccattgccc cacgggcttt cccagcttgg
     4321 ctcaccggct ttcgacattt tccacaagac aaaatccatc gggtttttct tgatggattt
     4381 aatttcaacc cttgcaccgg cttgtagttg ctctaaattt tggcgggata atgcaccata
     4441 tttctggaac gattccacat caaacatcac atcgccatcg gctgcgacat aagcgtgtcc
     4501 gttgtgaatc agtttttcta ccatcgcaat aatttcagga atatgcttgg tggctcgtgg
     4561 ctcaacgtcc gggcgaagaa tgtttaacgc atcaaaatct ttgtgcattt cagcaatcat
     4621 tctatccact aattcatcgc aagtttcgtt attttctaac gcacgtttga tgattttgtc
     4681 gtccacatcg gtaatgttac gcacatagcg taaattgtag cctgaataac gtaaataacg
     4741 ggcaatcaca tcgaaagaga caaaagtgcg accgtgccca aaatgacaaa gatcgtaaac
     4801 cgtgacgcca cagacgtaca ttcccacctg atttgggtta atcggtttaa attcttcttt
     4861 ttcacgtttt aaggtgttat aaattttgag cataaagtcc tcttgtgtaa cattcagtaa
     4921 caaatggggc taagtatagc gaataagcgg tctgattttg agattttttt gcaatttggc
     4981 gtaaactttt taataatagc gagcgaaatt tattttccat tccattttta tttataaagg
     5041 aacaaagaat gattacatta cataccaatt tcggtgacat taaaatcgaa ttaaactttg
     5101 aaaaagcccc gattaccgct aaaaactttg aagattacgc taaagaaggg ttttataacg
     5161 gcacgatttt ccaccgtgtg attgacggct ttatgattca aggtggcgga atgacggcag
     5221 gtatggctga aaaaccgaca aaagatccga ttcaaaacga agcgaacaac ggtttaagca
     5281 acaagcgtgg cacaatcgca atggctcgca cttctgatcc gcattctgct tcgtcacagt
     5341 ttttcattaa tgtggcggat aatactttct tagattatcg ctcaaaagag atgttcggca
     5401 gaagtgtagt gcaagattgg ggctatgcag tatttggcga agtggttgaa ggtatggacg
     5461 tggtcgataa aatcaaaggc gtaaaaaccg gcaataaagg cttccaccaa gacgtgccgg
     5521 ttgaagatgt ggtgattgag tctgtaagcg ttgcctaatt ccgcaaatta gcctacaagc
     5581 ggttgatttt tcacaatttt ttgcatttct cagcgttgca aaaaagtagc agaaatcgac
     5641 tgcttgtttt tatagaaatt gatacagcca aataatcagc ggcattgtaa acacacaaag
     5701 taaagtggtt acgccataaa tcgcactggc ttttttggca tcttgcccgt aagccaccgc
     5761 catttgggtc gccgttgcag cagaagggct gatggtggct aagaatgtaa tcattaccac
     5821 cgtttttcca ttctctatcc agctcgcaaa accgccgagt ttaatcaccg ctaacaaaat
     5881 cagcggaata aaaatcaagc ggagaaaagc caccaagtaa atgcgtttat cggtaataat
     5941 ctctttaaat ggaattgctg caattaacat ccctgccaca agcattgcta aaggccctaa
     6001 catatgccct aaagttgaga gcgtgtttgc aagcgtagcg ggcagtttga tatgtagcaa
     6061 aaacaacatc ataccaatca caatcgcaat aatgttgata ttaaagatca tctttctaaa
     6121 cggcacattg cctttgccac aaatcagcag ccgtaagtga gaccaaaaca acacattttg
     6181 caccacaata aaagccgttg aataaatcac ccattcattg ccgaacaggg aggcaacaat
     6241 cggaataatt aagttgccgg agttggaata aatagcggtg gcttgttcta tgttgtctaa
     6301 tttcaacgct cttttgagca gccaaccaag cagaattaac aagccgttta ataagacgga
     6361 gattaaaaat gccagataca agccgtttag tatttcggtg gtgtaatcta cttgaaaagc
     6421 agtaatcagc attgccgggc tgataatgta aagtccgata accgaaatcg gataactgtg
     6481 ctccgatttg agtaatttag ttttaacgat gaggtagccg agcagcacca tcagggttaa
     6541 ttgtagaatt ttatcggcta ataaaagggc tatttccatt atcaattaag agcgagtctc
     6601 tcttctcctg cataaatggt cgctttgcct ttgcgggcaa aagcaagtaa ggtaaattga
     6661 ttttcacgag ccatattcac tgccatttca gtggtcgctg agatggcaca caacatttca
     6721 atgccaacgg ctaagcattt ctgcaccatt tcaaagctgg cacgactggt tacaaacaca
     6781 aatccaatcg gaaaatcagc tttagcatac caaccgatta atttatccaa cgccacgtgt
     6841 ctgcccacat cttcacgaat ggcaagcagt tttccatccg gggtaaaaaa tgcagcggcg
     6901 tggcttgcac cggtttcttt cgataagaat tgagcatttt ctagctgtaa taaacaatcc
     6961 tctaaaatca gtggattgac gttctgcaag cggttatttt tcttaacaat tttgcaactt
     7021 tgattaacct gctctaattg ctctacaccg caaataccgc aacctgttct gcctgccatt
     7081 gagcggcgtt tatcttttaa tgcaacaaat tggcggctcg atatttcaag ctgaatttct
     7141 actccatttt cttgttcaat tacatctaaa ccatataatt ccgatggggc atttaaaatc
     7201 ccttccgcca atgagaatcc taaagcgaag tcctccaaat tagccggtgt tgccatcatt
     7261 acagtatgag aaataccgtt atataccaaa gcaaccggca cttctgaaat taaattttct
     7321 t
//
LOCUS       DANLXK010000118         7197 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.119, whole genome shotgun sequence.
ACCESSION   DANLXK010000118 DANLXK010000000
VERSION     DANLXK010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7197
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            8..901
                     /locus_tag="PXD88_002135"
     CDS             8..901
                     /locus_tag="PXD88_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL6281672.1"
                     /translation="MNKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLL
                     EDFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQ
                     TFGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRL
                     TESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS
                     IFSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSA
                     QVQKVQFFVEWIQQKMKECCA"
     gene            977..1660
                     /gene="yjjG"
                     /locus_tag="PXD88_002136"
     CDS             977..1660
                     /gene="yjjG"
                     /locus_tag="PXD88_002136"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL6281673.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            1657..2640
                     /gene="cysB"
                     /locus_tag="PXD88_002137"
     CDS             1657..2640
                     /gene="cysB"
                     /locus_tag="PXD88_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL6281674.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            2641..3285
                     /locus_tag="PXD88_002138"
     CDS             2641..3285
                     /locus_tag="PXD88_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281675.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(3359..4408)
                     /gene="ansB"
                     /locus_tag="PXD88_002139"
     CDS             complement(3359..4408)
                     /gene="ansB"
                     /locus_tag="PXD88_002139"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL6281676.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            4672..6309
                     /gene="pyrG"
                     /locus_tag="PXD88_002140"
     CDS             4672..6309
                     /gene="pyrG"
                     /locus_tag="PXD88_002140"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL6281677.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            complement(6477..7073)
                     /gene="nfuA"
                     /locus_tag="PXD88_002141"
     CDS             complement(6477..7073)
                     /gene="nfuA"
                     /locus_tag="PXD88_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL6281678.1"
                     /translation="MEEQTIHISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAE
                     CGVSYCPPNAVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNA
                     KMRKVADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSM
                     VDVTLKEGIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
BASE COUNT         2173 a         1311 c         1525 g         2188 t
ORIGIN      
        1 aaaaattatg aacaaaaaac ttccaccact caatgcattg aaagcatttg aatctgctgc
       61 acgccattta aattttacta aagcggcaga agatctcttc gtcacacaag ctgcagtgag
      121 ccaccaaatt aaactattag aagatttttt aggtgcttcc ctgttccatc gccgtaaccg
      181 tttgctggaa ttaactgagt taggcgcaca atatttctat gaagttcagc cattattaga
      241 acaaattgct ctcgcaacag ataaaattag gcagcaaagt agtcgtcaaa ttctgactat
      301 tagcgtacca caaacatttg gtatgcattg gttagtccca cgtttggcgg atttccacga
      361 aaaatatcca gaagtggaag tacgtattaa gggtgttgat caagatgagg gattattagg
      421 taaagaaaca gatgttgcta tttattatgg taagggggat tggcaaggtc tggaatctat
      481 ccgtttgacg gaatcccgta ttgttatttt agcttcgcct gagtatttat cgcaaaatac
      541 cattcattta ccggcggatt tagcaggtaa gcatttatta cattcctcca cccataataa
      601 gtggaaaaga atggttgaac atttgcatat agaagatata gtagatgcgg aaactggctc
      661 aatttttagc catactttta tggtgcttca agctgcaatg caccaacaag gcattgcgat
      721 tgccaaccag ttgttggcac agcacgaaat tgaaaaaggt actttaatag agcctttccc
      781 aaccacattg tttgatgaaa aatcgttcta tgttgtctat ccttcgcaat cagcccaagt
      841 tcagaaagta caattttttg ttgagtggat tcagcaaaaa atgaaagagt gttgtgctta
      901 agcgtggctt tatcagcggt atgcgaaaaa ttagaaaaat ttgaccgctt gttatctaag
      961 ttaaaaaagg aatattatga aatatcaatg ggtattattt gatgctgatg aaaccttgtt
     1021 ttcatttaat tcttatcttg gtttaaaagc gatgctggct cgttaccaaa ttgattttag
     1081 tgaacaagat tatcaagact ttcaagcggt aaataaacca ctttgggtgg cttaccaaaa
     1141 taatgagatc actgctcaag atattcaaac cagacgtttt gtaaaattat ctgctcaaac
     1201 aggcgtagat ccgctacaac ttaatcaaga gttaatggcg gagatggcat tcgtcagtca
     1261 gcctttagaa ggtgtaatgg atatgttaaa tgctttatat ggtaaagtaa aaatgggcat
     1321 tatcaccaat ggttttaccg atttgcagca aaaacgttta gataatactc aaacttcaca
     1381 tttttttgat attgtagtga tatcagaaca aattggtgcc gcaaagcctg atcgccaagt
     1441 gtttgattac gcttttgcat taatggacga atttgatcgt actaaagtgc ttatggtagg
     1501 cgataccctc gcttctgata ttttaggagg taataatgct ggaattgata cttgttggtt
     1561 aaatttgctt agtaaagaga atgatacgga tattaagcca acttacgaag tgcatacgat
     1621 gcaacagatt attgcgattg tagaggggaa atcattatga agctacaaca gttacgttat
     1681 atcgttgaaa tagtaaacca gaacttgaat attaccgagg ccgcagaggt gctttacact
     1741 tctcaaccgg ggattagcaa acaagttcgt ttgttggaaa gtgagttggg aattaatatt
     1801 tttgagcgta acggtaagca cgttaagggg ctaacgcctg ctggtgaaaa aattgtggcg
     1861 attgctcgtg aattattggt aaaagcccag agcattaaat cggttgctga agaacaaact
     1921 cgacccaaca aaggcatctt acgcattgcg accaccaata cccaagcccg ttatatgcta
     1981 ccgagtgtaa ttgagaagtt taaggctcgc tatcctgaag taagtttgca tttgcaccaa
     2041 ggctccccga atcaaattta tgatgctttg gtggctggag aagtggattt agccattacc
     2101 acagaagctc aatatttatt tgatgaagcg gttttattgc cgtgttattg gtggaatcgt
     2161 tcagttattg tcaaaccaga gcatcctctt gcggcttttg tgaaccaaag taaaaatttg
     2221 actgtcgaac aattaggtag atatgatttg ataacctata cttttggttt tacagggcaa
     2281 tcggatttag atcatgcctt caataaggaa ggtattttgc ctaatatcgt atttacggcg
     2341 acagatgctg atgtaatcaa aacttatgta cgcttaggct taggggttgg tattatggca
     2401 tcaatggcac atacggaaac ggataaagac ttagtcgcta tcaatgcaag tcacctgttt
     2461 caaccgagta tgacgcaaat cgcctttaaa cgaggaactt ttcttcgtaa ctatatgtat
     2521 gattttatta attatttttc gccacattta acacgggtac aagtggagaa agcggaacaa
     2581 ttacgagata acaatgcaat ttcaaggttg ttcgaaagta tatctttaga ggagaaatag
     2641 atgagaattt ggcagaagtt agcgagcgta atcgtggtca ctttgggctt gatttcaaac
     2701 gccagtgcgg agaattttaa gttgaaatac agctcaaatt atttaatgcc agcctacatt
     2761 aactttaata acggtggtgg ccaatataat attcaggcaa aaattaatgt gcctttatat
     2821 aatattgtct tttctgcgaa gggaacagaa aaaaacgaac aatttcatat gttgagctac
     2881 cgagataccc gtaacggcaa aacttatgcg atggcagaaa ttgattctaa aacggtaaaa
     2941 tatggcaaag tgaaagagcc actaaaagaa gaagcgctga ctatgccaac ttatgatttg
     3001 ttcaccacag cctttcagtt gagctattac gataaattac cgagcagttt tcaaactact
     3061 aacggtaaaa aactttaccc aacaccgaat gtgcagctac gcaaagccca aaaagaggta
     3121 aaagtaggcg gcaaaaccta ccaagaaatt acctacaagt ttagaaccag tgataaaaaa
     3181 gacattacgg tgaaaaaatt tgaaggtgaa aaattccctc gctatatcgc ctatagtcgt
     3241 gatggcgaca attatgagct aacttttgat agctttgtaa aataataaag attagtaatg
     3301 agacaagcgg tctattttgt gatttgtttt gcaaaataga ccgcttgtta tttacttttt
     3361 agaaatcttc aaaatattgt tgaatagttt ttatatcatt tgtttgtgtt aaggcgagct
     3421 gcagtaatac tcgagctttt tgaggattta atgtgccgga agcaataaaa ccatacttgc
     3481 tatcatcaat ttctgcatct cgggtagtat atccggttgg cactcgagac gagcgaacca
     3541 cggtaattcc ttttttagct gcttcttcaa gtaaagccaa attagccgca ttcatattgc
     3601 cattgccaac tcctgcaacc acgatgcctt gataactcgc atctaataat gcttgaagcg
     3661 gttcggttgg catatttgaa taagcataaa taatgccgac ttttggcaat tccgttaatt
     3721 catctacttt gaaaggggtg tttacggtgt gtttactttc aggagagcgc tcataatcaa
     3781 ctttgctatt atggatatag cctagtgcgc caaagtttgg tgagttaaat gtttgcactg
     3841 atgtagtact ggtttttgta acatcgcgag cgcccaatac aatatcattc attgcaacca
     3901 acacccctct gccactagat ttagaatctt tggcgacaac aactgagtta tataaattta
     3961 atacgccgtc ggcacttttt tcagttgctg gtcgcatggc ccccactaat actacgggtt
     4021 tttcgcattt tacagtcata tcaaggaagt atacggtttc ctccatagtg tctgtgccgt
     4081 gcgtaataac gaagccatct gtgtttgggc attgttgatt aattgctttt gccagtttta
     4141 gccatacttc atcagacata tcctgagatc cgattttaac gatttgttct cctttgatat
     4201 ttgctaattt tttaatatcc gggacggctt ctatgagtgt ttcaatattt agctgcccag
     4261 cttgataagc tgaggttgcc gtattttttt ggctaccggc aattgtccct ccagttgcaa
     4321 gaattgtaat attaggtagg tcggctgctt gaattggcat agtagcaatg cttaacagag
     4381 ttggcagtag taattttttg attttcattg tatcgtctcc agtattagaa aaacaggtat
     4441 tatgatatct ataaacatgt aggttaattc tgatctatcg caaataatag tgtattaatt
     4501 aagattagtc ggcattattg aaaaaagaat taatctgact gcttgccgat tttccattag
     4561 caaaaaaatg taatttgatg taaactactt tcccgtcctg atagtttctt ttttacgaag
     4621 taaactgata ttctgaattt ccaacctaat caatcagcaa aggcaatcac aatgacaacg
     4681 aattatattt tcgtcacagg cggtgttgta tcttctttag ggaagggtat tgcggcagcc
     4741 tctttagcat ctattctgga agctcgtggt ttaaatgtaa ccattatgaa gcttgatcct
     4801 tatatcaatg tcgatccggg tacaatgagt ccaactcagc acggggaggt atttgtgacc
     4861 gaagacggtg cggaaaccga tttggattta ggtcactacg agcgttttat ccgttcaaaa
     4921 atgagcaaag ccaacaactt taccagcggt aaaatttact ctgaagtgtt gcgtaaagaa
     4981 cgccgtggcg actatttagg tgcaaccatt caggttattc cgcatattac caacgagatt
     5041 aaagcccgtg tgttagaagg cggtaaaggg cgtgatgtcg ccattgtaga agtaggtggc
     5101 acggtggggg atattgaatc actgccattc ttagaagcac tccgccaatt agcggtggat
     5161 atcggtcgtg aaaaaacctt gtttatgcat ttaaccttag tgccttatat tccaaccgca
     5221 ggggaagtga aaactaagcc gactcagcat tcagtaaaag agttgctttc aatcggtatt
     5281 cagccggatg tgttaatttg ccgttcagat cgtgctattc cggaaaatga gaagaaaaaa
     5341 atcgcccttt tctgtaatgt gccggagcgt gcggttattt cgcttaaaga tgtagattcg
     5401 atttatcgca ttccggaatt attgaaatcg caagggttag attcctttgt gtgcgatcgt
     5461 ttccgtttag attgcaaaga agccgatctt tcagagtggg aacaagtgct atactgccaa
     5521 gcaaacccaa ccggcgaagt gactatcggt atggtcggaa aatatgtgga attacctgat
     5581 gcgtataaat cggtgaatga ggctttgaaa cacgcaggtt taacgcatcg tttaacagtg
     5641 aatattaaat acattgattc acaagatatt gaaaccaaag gcacagagtt attggcaggc
     5701 ttagacggca ttcttgtgcc gggcggcttt ggctatcgtg gcgtggaagg caaaattcga
     5761 accgcacaat atgcccgtga aaacaagatt ccttacttag gtatctgttt aggtatgcag
     5821 atcgccctaa ttgaatatgc ccgtaatgtg gcaggtttaa ccgaggcaaa ttcttctgaa
     5881 tttgataaag attgctcaca gccggtgatt ggcttaatta ccgaatggca agatgcggaa
     5941 gggaatgtgg aaacccgcag cgatgagtca gatttaggtg gtacaatgcg tttaggctca
     6001 caacaatgcc atttaattga aggctcaaaa gctcgtgagt tatatggtgc ggaaacgatt
     6061 gttgaacgtc atcgccaccg ttacgaagta aacaataagc tgttaccaca aattgaagcg
     6121 gcaggcttaa aagtgagcgg tttatcggca gatcgtaaat tagtggaaat tattgaagtg
     6181 ccaaatcacc cttggtttat agcagcacaa ttccatccgg aatttacctc aactccgcgt
     6241 gatggtcatc cattatttgc aggttttgtg aaagctgcga aagatcacca agagagtcgt
     6301 aaggcttaat caaacttaac aagcggtcga atttactcat ttttttgtac aaacgcttgc
     6361 gtttgaacat cggctttgct gatggcacga agtgcgagcg aaagcgagta aatttgaccg
     6421 cttgctcatt aattataaga aagggataaa tcaatgattt atccctttta gtatttttaa
     6481 tagtaagaat gttcaccgtg ttggtgttcg gtaatatctt tcacaccaac taattcatca
     6541 gggaacattg ccagaagctg tttctcaatt ccctctttta aggtcacatc caccattgag
     6601 caaccgttac aaccaccgcc gaattgtagc acggcatatt tatcttcggt gatttcaatt
     6661 aaggtcactt taccgccgtg gctggcaagt tgtggattga cttgggtttg aatcacataa
     6721 tctaaacgct cgataaacgg tgcatcatca gccactttac gcattttggc gttaggggct
     6781 ttgagggtaa gttgtgaacc cattgggtcg gttacataat caatttccgc ttcgtctaaa
     6841 aacggtaagc taatatcatc gacaaatgca gagaaacggt taaatttaaa ttcggtatcc
     6901 gtctcttcaa ctgcattggg tgggcagtaa gagacaccgc attctgcccc cggtgtgccg
     6961 ggattgacca caaaaatacg gatattagtt ccctcttctt gctgttctaa tagtctggca
     7021 aaatgggctt gtgctgcatc tgatattgaa atatgaatgg tttgttcttc catttaaatt
     7081 atcctgtttt ttaatatttt acaaaattta tcaactattt tacgcctgaa tttcaaaatt
     7141 gcctagctaa aaaaattttt gcaaattgtt aataaaattt aaccgcttga agggaaa
//
LOCUS       DANLXK010000119         7152 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.120, whole genome shotgun sequence.
ACCESSION   DANLXK010000119 DANLXK010000000
VERSION     DANLXK010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7152
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            219..887
                     /locus_tag="PXD88_002142"
     CDS             219..887
                     /locus_tag="PXD88_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6281679.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            884..1765
                     /locus_tag="PXD88_002143"
     CDS             884..1765
                     /locus_tag="PXD88_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6281680.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQLPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            1765..2580
                     /locus_tag="PXD88_002144"
     CDS             1765..2580
                     /locus_tag="PXD88_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL6281681.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            2577..3713
                     /locus_tag="PXD88_002145"
     CDS             2577..3713
                     /locus_tag="PXD88_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL6281682.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            3741..4139
                     /locus_tag="PXD88_002146"
     CDS             3741..4139
                     /locus_tag="PXD88_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL6281683.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            4174..5877
                     /locus_tag="PXD88_002147"
     CDS             4174..5877
                     /locus_tag="PXD88_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL6281684.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            5989..6633
                     /gene="adk"
                     /locus_tag="PXD88_002148"
     CDS             5989..6633
                     /gene="adk"
                     /locus_tag="PXD88_002148"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL6281685.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(6695..>7152)
                     /locus_tag="PXD88_002149"
     CDS             complement(6695..>7152)
                     /locus_tag="PXD88_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6281686.1"
                     /translation="YFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPSYKPR
                     AEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQASVV
                     NEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
BASE COUNT         2086 a         1406 c         1427 g         2233 t
ORIGIN      
        1 ttgactttca tttataataa aaatatattt agcaccgttt tcataataga ttttcatcta
       61 ctcattttca ttttgattga tttggtgggg taatcccacc ttttttatgc tcttaaaaca
      121 caacactatg attcaaataa attccattag ctactctgtt gaacaaaacc gtaaactgct
      181 aagcaatatt tccctcaatt taagcaaggg gcgtttatat ggcgcataac ggctcgggta
      241 aatcaacgtt aatgcgttta ctaagcggag atataacgcc taccagcggt tcaattttag
      301 tcgatggatt accacttcat cagctttcta ccaaagaagc ggcaaaacat attgcctatt
      361 taccacaacg tttacctgaa gcggcggatt tcttagtgca ggaactggtt gctttagggc
      421 gatttccata tcaaaaatgg ctacaaaaac caacagaatt tgatgttcaa attgttgagc
      481 aagcaatgga aagcacctcc gttactcagt ttgctaaaca gcctgtaaat agtctatcag
      541 gcggagaaaa acaacgagtt tggcttgcta tgtgcttagc ccaacaaaca ccctatttac
      601 tgctagatga gccattggct gcccttgata ttgtttatca agttgaagta atgcagctta
      661 ttcgcaagct agtgaatgaa caaggtctaa ctgtcattat cattattcac gatattaatc
      721 ttgcctccca attttgtgat gaaattattg cgttaaagca aggcgaactc tgtattcaag
      781 gttctgttga tgaaattatg caagaacaga aattacttga gatcttcggg ctaaaactgc
      841 acttgtttaa ccaccctgca ggcttacata aagtggcggt attatgatgt ttaggcaata
      901 caagcggttc atttttctct ttattttgca aatttctacc gcatttgctc aacctaatat
      961 ttttacacca gattggtcta ttgcctctgc ccttactgaa atgggaaatc cgcccattgc
     1021 gatgggggat aagcgaattt atccgctatg gtcgcaccgc cctattcagc ctaatagcgt
     1081 gttagatatt ggagcgcgtt atcagcctaa tcgcgaatta ttagcacagc ttcctgttga
     1141 attggtgcta tcaaactttt tctacgctca cttggcttct gtttacccga aagaaattcc
     1201 acaaatagac gtgctatttg atggtggcaa tactgaacct cagcaacatt ggcatactta
     1261 ccaaaaagcc actcgtatga ttggaacaga gattaaaaac cctaatgcgg cagaagcata
     1321 tttaacgaaa actgaacaaa cgttggctca atgggggaaa gaaatcctta acagtaatcc
     1381 agatattgat tactactctg ttgttcaatt tggctctccg agagagttac gcatatatgc
     1441 gtctaattca atgttccgtg tagcctttga tttgatgggc ttaaaacaag ctgatttagg
     1501 tgtgggagat cgctggggaa ataaacttat tcctgtgagt gatttagcta aattacccga
     1561 acgcacctgt ttaattgtca tctcaccttt ttctaaaatg acgcaagcag atttagaaaa
     1621 tagctacatt tggcaacgtt taggatttgg taaaaaccgt tgtatgaaag tattaccgcc
     1681 tgtttggctc tttggtgggg ctgattccat ctcgcacttt gctgagtttt tacacaatgc
     1741 aatgacacaa ggagaaaaag agtaatgaaa tcatcattct tattgattgg ctgtattctt
     1801 ttatccttag taacagctgt tatccgttta aatatggtct gggagtggga atggcagtta
     1861 ctactcataa atgttgattt attgccaatt aatcaagctg cggtaaaagc agctctttta
     1921 cctgaaatga caacgtcatt tttagcaggc ggtttattgg ctatagccag cagtggctta
     1981 caacatattg tcagaaataa tttagcgtca gatagcacac ttgccgtcag tagcggggct
     2041 caacttgcat tgatgattgc ggttatcttt ttcccagccg ccgagctttt ttctagtttc
     2101 tggattgcgt tacttggctc tttagctgct atcgtactgg ttttatttat tgctaaagcc
     2161 tctaagctca atccccttac ccttatttta gggggattga ttgttaatat tttgtttgga
     2221 gctattgcct ctttactgac ccttttctac tttgattttt tatttggcgt gatggtttgg
     2281 ggaagtggct cacttttaca agatggttgg gcaacttcta ttaccttagc gataacggta
     2341 gtagttgcat tttttatctt tgtcttactc tctcgtccac tcacaatttt aagtttagat
     2401 gatgaacaag ctcgccgctt aggcgcgcct gttaatttac tacgctactt agttattttt
     2461 gtttgtgccg ccattacagc attggttgta agcaaaatag gtgtgattgg ctttattgga
     2521 tttgcagtgc aagtttggct cattttgcca aaatacgaca tttattactt cgcctcttga
     2581 ttgcttttct agcgggcgga tttttactct tttttaccaa taatctcatc ggcattgtta
     2641 gcagaattta cgacactcta ctacctgttg gtgcatttac cgcaacacta ggcgcaccat
     2701 tattaatttt cttggtatta cgccaacgta aagcacaatt tgaagcaagc aatacagcat
     2761 acttccccgt taaacgcctc aattcgtgga aactgccaat attgttgtta tgcgctggag
     2821 ttatcctatt ttgtctatta caaatcattg ctccaacaat gaatggctgg gctattagca
     2881 ttgatgaaaa cctgatgagt tcctaccgct tgcctcgtag tctaagtgcg atagcaacag
     2941 gggcaatgct tgcggtaagt ggtagcctat tacaaatctt aacgagaaac ccaatggcaa
     3001 gccctgaagt attaggtgtg agttcagggg caactattgc tgcagtactg tcattcttac
     3061 ttttcccaac attatctagc attagcttct tgttatttgg tgtattaggg agtttgactg
     3121 ttctcgctct tattatgtgg ctctctcgta aattacaacc atcagcgtta atgattacag
     3181 gtgttgctat tggagcttta gtcagtggct taatggctat tattcaacta agcggcagcc
     3241 ctcgtttaac ggcagttatt agttggctgt ctggctcaac ctattacgct aatccgaata
     3301 cagtttggat tttattatct gttgcaatcc tacttatcag tgccacttta ctgtttatca
     3361 aacctttacg tttgatctca cttggcgaga ccgtttctta ccatttaggg ttagaggtta
     3421 aaaaagtaca aatgattgta ttacttttaa ttgccctaat gagtgccgcc tctacacttg
     3481 cggtagggcc aatgagcttc attgggctaa tgacccctca tttagctaaa aatttaggtg
     3541 caattacacc ggagaaacag atccctatat cggcattatt aggggcaatg ctaatgctca
     3601 ttgccgattg gctcgggcgt tatctaattt tcccttatga gattggggca ggcattattg
     3661 cctctattct cgggggtatc tatttcttac tgttactcaa acaacataaa taatttttta
     3721 ttcattactt aggagaaatt atgaacacgc tatctaaagc gataaaactt gccttataca
     3781 gttctggtat agggtttatc tcaacagctt acgctgaaac agttactcat cttgataccg
     3841 tagaagtaag tgccgaaacg ccaaatgcct catcggaaga aactggacgt tatgcacaga
     3901 aaaaagccaa aggctctaat ggaatggcat tgagtgcgaa agacacgcca caaagcgtaa
     3961 cggctgtaac gcatcaacaa atcagagatc aaaatcttaa tacgattgcc aaagcacttg
     4021 aagcaactca cggtgtttct gtttctttac ttgacagagg acgctattct ttcagtgctc
     4081 gtggttttgg gattgataaa gtcaaggtag atggtatgga tctcaaagta agtaaataac
     4141 caatggacaa cgggcgaaaa tacaggcaac agcgtgttat acgaccgagt agaagttgtg
     4201 cgtggtgcta caggcttaac tactggggca ggcgatcctt ctgcaagtgt taatcttgtt
     4261 cgtaaacgag ccaatagcat ttcccgttat actattttag aagctggaat cgggcgttat
     4321 gctgatttca atacaatgat tgaccatagc caagcattga ataattcagg atcagtaaga
     4381 ggccgcttta ttgcagagca taaaaacggt aatacgttca ttaaaaatga aaaagaacgt
     4441 tacaccacgc tttatggcaa tattgaagca gacttaactg acactaccaa acttgggtta
     4501 ggtgtaagct atcaaaaaga aaaacgtgat gcagcacttt ggggtggttt acccgcattc
     4561 tatagcgacg gtggtgaaac taactggagc agaagcaaaa atgccagtcc ggaatgggct
     4621 tactgggata atgaatccgt aaactatttt gccgatatta cacaaaaact aggcgaaaaa
     4681 tgggaacttg cattaaaagg caattaccgt gtaggcaaac ataattcaga acttttctat
     4741 ttcagcggct catcacttaa tcgccaagat ggattaggtt ggtcgccttg gccgggtaaa
     4801 tttaaaaatg ataatacaca atctaatgtg cagcttgatc ttaccggttc attctctgct
     4861 tggggattag aacacgatgc ggcaatcggt attcaataca atcgagcaca tcgtaattcc
     4921 tacgctgccg ataatagcac ctttgacgga gctttcgact ttaataattg gaatggcatt
     4981 tatgctagac caaactgggg aagtatgtct gaaaaatact accaaaactt aaaagagttc
     5041 ggggtgtatg tttctacccg tttacatctt acagatagac tttctatgct tctaggttct
     5101 cgtatttcat cgtaccgcac agaaggcact ttctatggtt caacacaaaa cttccacgct
     5161 aacgatgttt ggacacctta tgcaggatta acctttgata ttaatccaca aaataccgtt
     5221 tatgtaagtt ataccgatat tttcaaacca caaagtcaag tggacatcaa taacaaacta
     5281 ctctctcctg ttacgggcga aacctacgaa gcaggttgga aagggagtta tttcaatgac
     5341 aacttgcaaa ctcaaattag cgtatttgaa acaagacaag ataatctagc tcaatctgcc
     5401 ggtattaacc ctaatacatt attagcctac tacacagcct ctaaaggtgc gaaagttcga
     5461 ggctttgaag tagaagcatc tggaaatgta actgaaaaat taaaactcag tgcaggatat
     5521 actcagtgga aaggcgatga tgcttcaggt aacccaatta acacaactca accacgcaaa
     5581 caatttaaac tctttgcaac ttacgatatg aaccgtttag tgcaaggttt aacggtagga
     5641 gcaggtgtaa actggcaaag cagaatttat accaaacacg ctacttatgg cgaatatggt
     5701 caaaaagctt acactttagt gaatttgatg gctcgttatc aatttaatga caacttctca
     5761 gcacagctta acattgataa cttattcgat aaaaaatatc gtaacgccct cagctttagc
     5821 caatatagct acggtgagcc attctataca cgcttaaatt tacgctatga attctaattc
     5881 cgtataacaa gcggtcaaaa aattaaaaaa atttgcaatt ttaggcagta atcggtaagg
     5941 ttactgccta agtgatttta ttatttttag tttaattgag gttttcaaat gaaagtgatt
     6001 ttattaggtg cgccgggtgc gggcaaaggt acgcaagctc agtttattat gaacaaattc
     6061 ggtattccgc aaatttcaac cggcgatatg ttccgtgcag cgattaaaga aagcactgag
     6121 cttggtaaac aagcaaaagc attgatggac gaaggcaagt tagtgccgga tgaattaacg
     6181 gtcgccttag taaaagatcg tattgctcaa ccggattgtg ctaatggctt cttattagac
     6241 ggtttcccac gcaccattcc gcaagctgat gcgttaaaag agtcaggtgt aaaaattgat
     6301 ttagtgttag agtttgatgt agctgatgaa gtcattgttg agcgtatgag tggtcgtcgt
     6361 gttcaccaac cttcagggcg tacttaccac gtggtgtaca atccaccgaa agtggaaggc
     6421 aaagatgatg tgactggtga ggatttaatt atccgccaag atgacaaacc tgaaacggta
     6481 ttagagcgtt tagcgattta ccacaaacaa accaaaccgt taatcgccta ctacaccgca
     6541 gaagcagaag ccggcaacac tcgttatgag cgtttagatg gaacaaaacc agtggaagaa
     6601 gtaagtgctg agttagcgaa aattttatct taaatggatt attaaaatga acaagcggta
     6661 atatttttcg agaatattac cgcttgttct ttgcttaaac acaatatttg gtgagcatta
     6721 agatatcatc ataaatcggt gaaataaaca cttccggatt ttcaatcttc atctcctttg
     6781 gtttttcttc tagcttttct ggctctttct tatctttatt ctctaccggt tgagtcgctt
     6841 catttaccac actagcttga gttttatctg ctacaggtat atctattttg tttggtgctt
     6901 gctctactgc ttgagaatcc gctttcagct ctttagaaac ttcagtattt acgataggtt
     6961 cttgtaagtt ttccgctact ctttcctcta cttgtggctt aatactttct gcctctgctc
     7021 tcggtttata agatggatca agtaattgat ggctaatatc cattttcgga tcaagccaaa
     7081 ttgctacaat agcatcattg aaagctttat taaacacatc agagactact ttatcattta
     7141 aaataaaata ac
//
LOCUS       DANLXK010000120         7069 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.121, whole genome shotgun sequence.
ACCESSION   DANLXK010000120 DANLXK010000000
VERSION     DANLXK010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7069
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            24..1400
                     /locus_tag="PXD88_002150"
     CDS             24..1400
                     /locus_tag="PXD88_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL6281687.1"
                     /translation="MLSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEG
                     AGFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHS
                     PSGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVAC
                     ALTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMI
                     LGLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLAT
                     NSTIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGG
                     VPALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSP
                     LATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVF
                     GWIAAMTL"
     gene            1498..2301
                     /gene="xthA"
                     /locus_tag="PXD88_002151"
     CDS             1498..2301
                     /gene="xthA"
                     /locus_tag="PXD88_002151"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL6281688.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            2455..3039
                     /gene="lptC"
                     /locus_tag="PXD88_002152"
     CDS             2455..3039
                     /gene="lptC"
                     /locus_tag="PXD88_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL6281689.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            3063..3569
                     /gene="lptA"
                     /locus_tag="PXD88_002153"
     CDS             3063..3569
                     /gene="lptA"
                     /locus_tag="PXD88_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL6281690.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            3581..4306
                     /gene="lptB"
                     /locus_tag="PXD88_002154"
     CDS             3581..4306
                     /gene="lptB"
                     /locus_tag="PXD88_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL6281691.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            4348..4860
                     /locus_tag="PXD88_002155"
     CDS             4348..4860
                     /locus_tag="PXD88_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6281692.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            4873..5736
                     /gene="rapZ"
                     /locus_tag="PXD88_002156"
     CDS             4873..5736
                     /gene="rapZ"
                     /locus_tag="PXD88_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL6281693.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            5819..7003
                     /locus_tag="PXD88_002157"
     CDS             5819..7003
                     /locus_tag="PXD88_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL6281694.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
BASE COUNT         2163 a         1444 c         1451 g         2011 t
ORIGIN      
        1 aaataaccta aggatcaaac acaatgttat caaacgaagt ctttatttcg attatcgtgc
       61 tgttaatcct aagcttgctt agaattaatg tagtaatcgc acttattatt tctgccctta
      121 cttgcggtct aatcggtaat cttggtgtag aaggggctgg atttaccgaa gcattggaaa
      181 aaacaataaa aagttttact ggtggtttag gtgggggtgc ggaaactgct atgaactatg
      241 ccgttcttgg tgcgtttgcc gtagctctat caaaatcagg cgtgaccgat ttattagcct
      301 ataaagtgat caaatccttt ggtcacagcc cgtcaggtcg ctccgttact tggtttaaat
      361 acattgtatt atttgtgtta gtggcatttg caatgtcatc tcaaaaccta attccaattc
      421 atattgcctt tattccgatt ttaattccac cgctattaag cgtaatgaat aaattgcaaa
      481 ttgaccgccg tgcggtagct tgtgctttaa cctttggttt aaccgccact tatatgttaa
      541 ttccggcagg tttcggtcag atctttattg aaagcatctt agttaaaaat atcaaccaag
      601 caggtgaacc gttccaatta gtgactacca cagcggaaat gaccaaagcg atgttaattc
      661 ctgtttccgg tatgatttta ggcttactgt ttgcattctt tgtgtcatac cgtaaaccgc
      721 gtgtgtatat tgaaaatatg cctgaaccaa ccgcagatga tattgaagcc cgtgttgcaa
      781 acgttaagcc cttccatatc ggcattagta ttgtggcgat tatcgcgacc tgttcggtgc
      841 aattagcaac aaattcgact attatcggcg gcttagtcgg tctggttatt ttcgccttag
      901 gcggtgtatt tagactgaaa gagagtaacg atgtcttcca agctggctta cgtttaatgg
      961 cgatgattgg ctttgtgatg attgccgcct ccggttttgc cggcgtggtc aattcaacag
     1021 gcggtgtgcc ggcattggta gaaagcctgc gtgatgtgat ttcatcaaaa gaaatggcag
     1081 cattgctaat gttagtcgtt ggcttattta ttacgatggg tatcggctct tcattctcga
     1141 ctgtgccgat cattacctca atttatgtgc cgctttgtat ctcatttggc ttctcgccac
     1201 tggcgacaat ggcgattgtc ggtgttgctg ctgcactcgg tgatgcaggt tctccggcat
     1261 cagattccac acttggtcca acctccggct tgaatgctga cggtaaacac gaccacattt
     1321 gggattctgt tgtaccaact tttatccact ttaacattcc attattagtg ttcggctgga
     1381 ttgcagcaat gacactttaa gctataatat gcaaaatttt tgctaaaaat gaccgcttgt
     1441 agccattaca agcggtctat tttcttcttt attttgcaaa ccacattagg atcaccaatg
     1501 aaatttatct cttttaatat caacggatta cgagccagac cacatcagct cgaagcgatt
     1561 atcgaaaaac accagcccga tgtactcggc ttacaagaaa tcaaagttgc cgatgaagat
     1621 tttccttacg atttagtcaa tcacttaggc taccacgttt tccaccacgg gcagaaaggt
     1681 cattacggcg tggcattact gactaaaaaa gagcctatag cggtgcgtaa aggcttcccg
     1741 acagatgtac ttgatgctca aaaacgaatg attatggcgg atatcgagac cgatttcggc
     1801 gtgctaaccg tattaaacgg ctatttccca cagggggaaa atcgcagcca cgaaaccaaa
     1861 ttcccggcaa aacaaaaatt ctatgctgat ttgcagaact acttggaaag cgaattaaag
     1921 ccggaaaatc cgattattat tatgggcgat atgaacatca gcccgactga tttggatatc
     1981 ggcatcggcg agccaaaccg caaacgctgg ctgcgtgacg gtaaatgttc attcttaccc
     2041 gaagagcgtg aatggctaga tcgcttatac agctacggct tggttgatac tttccgtgca
     2101 ggcaacccag acgtgaacga taagttctct tggtttgact accgttcaaa aggttttgat
     2161 gataatcgtg gcttgcgtat tgatttaatt cttgcttcaa aatcacttgc tgagcgttgc
     2221 gtggaaacag gcattgattt agacattcga gcaatggaaa aaccgtctga ccactcccct
     2281 gtttgggcaa cctttaaata aagttgcaaa aaaatctgag ttttcaaccg cttgtcagtt
     2341 tttagcccta caagcggtta ttttttctca cttttttgca ctttttacgc tgtactatat
     2401 ccctattcaa atctgtgcta caatcaaaca ctatttttag attatttttg gattatgaac
     2461 aaacgtttaa ccgttatttt actgattatt gttgccgtac ttggtggctg gtattacagc
     2521 ttacaagaga aagagaatac ggggcttgat cagcttatta aaaaggaagg acagcctgaa
     2581 tatgtgggga ataaaatgtc caccacggtc tatgatctaa aaggaaaccc acaatatttc
     2641 gctcaagcta ctgaaattaa acgctatgag tctactgagc gtactgagtt ttttaaacct
     2701 tttattgagc tttttgccaa agagtcgacg caaaaacagt ggaaagtcag tgccgattat
     2761 gcagaaatta ccaaagaaaa aatgttaaat ttaaaaggta atatcaaact tgttgcatta
     2821 gatcctgcat cacgtttgca acaaatcact accgatacgt taactgttga tttaaataca
     2881 caggatattt ttaccgaaag tacggtcaaa tcgataggtt ccggttttac tacaacgggg
     2941 gttggattaa aaggtaactt aaaacaacaa gttgcgactt tgcaaaaaga tgtaaaatct
     3001 tacattgaac cgaccattat tcaagaaact aaagaataat ttgcttggaa caaggaataa
     3061 caatgaaatt aatgtttaaa tctattttag tgagcgtgtt actgggtagc agcttttccg
     3121 cttatgctct aaaaggcgat accgatcagc cgattaatat tgattcaggt agccaatcgt
     3181 tagatatgac taacaatatc gtgaccttta gcgataatgt cgttatcact caagggtcga
     3241 ttaaagtgac cgcagcaaac gtcaaaatta cccgtcaaga aggtaaaaaa gaaactattg
     3301 acgctacagg ctcacctgta acattccaac aaaccttaga taacggtaaa ccggtaaacg
     3361 gtaaaggcaa cagcgttcat tatgatttaa actctgaatt tttaacgctg attggcaatg
     3421 cggaactcaa acaacaaggt agctttatta aagccaataa aattacctat gatgtgaaaa
     3481 aacaacaact taaagctacc agtggcggta aaacccgagt gaaaaccgtg ctaattccaa
     3541 atgaacttca agataacaag aaaaaataag gttaaatgat atgtctgtgc tttatgccga
     3601 acatttagca aaaagctata aacaacgcca agtggtaaaa gacgtcagcc tgaatgtcaa
     3661 atcaggtgaa atcgtgggct tgctcggtcc gaacggcgca ggtaaaacca ccactttcta
     3721 tatggttgtg ggtttggttc gccacgacca cggcacaatt cgtattgacg accaagatat
     3781 cagcacacta ccaatgcacg acagagcaaa acaagggatt ggctatctac cgcaagaagc
     3841 atctattttc cgccgtttaa gtgtgtacga taacttaatg tcggtattac aagtgcgtaa
     3901 aaatatcaat gataaacagc gtaaagagcg tgccgaagag ctgattacag aattccatat
     3961 tgagcatatt cgcaatagtt taggtcaatc actttcaggt ggtgaacgcc gccgtgtgga
     4021 aattgcccga gcattagcag cgaacccgaa atttattctg ttagatgaac cttttgctgg
     4081 ggttgaccca atctcggtaa ttgatattaa aaaaattatc gtcaatttaa aagagcgtgg
     4141 tttaggggta ttgattaccg accataacgt acgtgaaact ctagatgtat gtgaaagagc
     4201 ctacattgtc ggtagcggcg aaatgattgc cagcggcaca ccacagcaag tgcttgaaaa
     4261 ccctgatgta aaacgtgttt atttaggcga tcaattcaaa ctctaaaaaa tcccctcttt
     4321 ggggatttca tctttagatg aaaaattatg acaaaactaa ccgaatttct aagccctgaa
     4381 aatgttcgcc aaggtgtact gatttcaagt aaaaaacgag cgttagaact cgtgggtaaa
     4441 atcgtggctg aatcaatcaa ccaaaccgaa cagcaatctg aagcactctg ccctattgaa
     4501 tgctttggca atttatttaa acgtgaaaag ttaggcacaa ccggcttaaa tcaaggcatt
     4561 gcacttcctc atgcaaaatt gcccgcttgc ggtgatattg agctgactaa accgattgcg
     4621 gtctttttac aactggaaga agcgattgac tacgaagccc aagacaacaa agaagtggat
     4681 ttaatttatg caatgatgtt tccggaaaat agctgcgaac agtataaaag ttgcctacct
     4741 gcaattgcac agaaacttac cgataaatcg ttattaaaac agctccgagc agctgaatcc
     4801 gcagaagata tttggcaaat tttggtgtat gctgataatc acctaaaaga tgaagaataa
     4861 tactgaggaa atatggaatt aatcattata agcggacgct caggctctgg taaatcggta
     4921 gcattaagag cattagaaga tgcaggttat tactgcgtgg ataatatccc tttaccttta
     4981 attccaacct taacctacta ccttactcaa gaaaatcgtt cggcagtcat cagcttagat
     5041 attcgtaatt taccgaatac gcctaatgcg attgaagaat tgcttaccca gcttgagcct
     5101 ttaaatgcta agctgatttt tttagattgc gaacgcaata ccttaatccg ccgttatagc
     5161 gattcccgcc gaatccaccc gctttccacc caagacgatc tctcgttaga aggtgcattg
     5221 gatttggaac aaaaattgct tgagcctttg gtgcaaaatg caaattatat tattgacacc
     5281 agtcatcttt cttcgcacga attagcggaa aatcttcgcc aaatactgca aggctcaacc
     5341 gaaaaagagc ttaaaattat tttccaatca ttcggtttta aatacggctt acctgccgat
     5401 tccgattacg tttttgatgt tcgcttttta ccgaacccac attggaatcc ggagcttcgc
     5461 ccaatgacag gcttagagca accggtgatt gatttcttag aacgccaaac cgaagtgcat
     5521 aattttattt accaaacccg caattattta gaaatgtggc tgccgatgtt ggaacaaaat
     5581 aaccgtagct acctaactat tgcgattggt tgcactggtg gaaaacatcg ttccatattt
     5641 attgccgagc aactggcaaa atatttccaa gcaaaaggca aaaatgtgca agttcggcat
     5701 aaaagtttgg aaaaacacca taaaaaaaca tcttaaataa gtaggggctg gtcctgtgcc
     5761 agccctcatt tcaactattt tagggcgggc acagggcacc gcccctacat ttgattttat
     5821 gaaatccgca gatattgtta ttgttggcgg cggtatggtt gggctggctc ttgccggact
     5881 gctcaaagat gtcgattgcc aaattaaaat tattgagaaa aacacgccca aatttgatgc
     5941 cgatacgatt taccaccgtg taagtgcgat taatgcttca agccaaaaaa tactggaaca
     6001 gattggtgct tttcaacaca ttccggctca acgcctttct ccttacaccg aaatgaaagt
     6061 gtgggaaaaa gacagctttg ctaatatcca ttttgataat aatgataatg aaatcaagca
     6121 attaggactt tcacaacttg gctttatttt ggaaaatgcg gtgattcaac acgcattgtg
     6181 gcaacaggtt tctcaacaag ctaatgtaga atatattatc gccgcccccc aaactctggg
     6241 cgtgagcgaa aacggggcat ttttaacctt agataacggc gaaatgctgt ctgctaaatt
     6301 ggttgtcggg gcagacggtg caaattcgtg ggtgcgtaac cagatgaaaa tgccgcttac
     6361 cagtaaagat tatcaacata ccgccttagt ctgtaatgtc aaaacaaccg aaaagcacgg
     6421 caaaaccgct cgtcaaatct ttgctgaaga tagcattttt gcttttctgc caatggcaga
     6481 tgagcatctc tgctcgattg tttggtcgct gccaccaaac aaagccaatg aattaaaaaa
     6541 tgcaagcgaa gccgaattta ataaagcctt aacgattgcc ttcgataatc agcttggctt
     6601 atgtgaagtg caaagtttgc gtgaaattta cccgcttgca gcacgcttct gccgtgactt
     6661 tgcccaacct cgtattgcgt tgattggtga tgccgctcat accattcacc cattggcggg
     6721 acttggtgtc aatttaggct ttgccgatgc cagaacgctg gcaaacgaaa tccaaaaaca
     6781 gttggtaaac aaccaagata ttggtgaata ccgccattta cgccaatttg aacgtgagcg
     6841 taaagcccaa gcgatgaaat tattagccac aatggaagga ttaaaacagc tatttgacgg
     6901 caatcacccg cttaaaaaat tattcagagg aattggttta agcctaacca accagctgcc
     6961 ttttgtgaaa aagcagctta ttcagcaagc tatttactta taaaatgtaa attttttcga
     7021 aataacgtaa agatgaacga ttttatgaac taatacggag attacttgt
//
LOCUS       DANLXK010000121         7031 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.122, whole genome shotgun sequence.
ACCESSION   DANLXK010000121 DANLXK010000000
VERSION     DANLXK010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7031
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..217)
                     /locus_tag="PXD88_002158"
     CDS             complement(<1..217)
                     /locus_tag="PXD88_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281695.1"
                     /translation="MSSIKEIFSTKNSPINVLMQTEWFLGFILIVVYLDAYFQLVHQV
                     PIYIAIQQKEIYLTKTIDYIAAIFFFSV"
     gene            complement(287..1420)
                     /locus_tag="PXD88_002159"
     CDS             complement(287..1420)
                     /locus_tag="PXD88_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL6281696.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1551..2579)
                     /locus_tag="PXD88_002160"
     CDS             complement(1551..2579)
                     /locus_tag="PXD88_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6281697.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2591..4135)
                     /locus_tag="PXD88_002161"
     CDS             complement(2591..4135)
                     /locus_tag="PXD88_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL6281698.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(4186..5124)
                     /locus_tag="PXD88_002162"
     CDS             complement(4186..5124)
                     /locus_tag="PXD88_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL6281699.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
     gene            complement(5456..6967)
                     /locus_tag="PXD88_002163"
     CDS             complement(5456..6967)
                     /locus_tag="PXD88_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL6281700.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
BASE COUNT         1905 a         1661 c         1461 g         2004 t
ORIGIN      
        1 taactgaaaa aaagaaaatt gctgcaatat aatcaatggt ttttgtgaga tatatttcct
       61 tttgctgtat cgcaatatag ataggcactt gatgaacaag ttggaagtaa gcatccaaat
      121 aaacaactat caatatgaag cctaaaaacc attctgtttg cataagaaca ttgatagggc
      181 tgttttttgt gctaaaaatt tctttaattg aactcataat ttttccttaa atgtaaaaaa
      241 acgtacctca accaatttga gatacgtttc tattttaatg taattattaa atctcactca
      301 cctccaccca ccttttctcc tccgccgatt ttgctatcgc ttccaatact ctggagattt
      361 tatagccttc ttcaaaatcg ggatacatcg ggtcatcagc ggcgatgccg ttgatgaggt
      421 cacggatttc caccgctttt tggtcgttaa aaccgatgcc gtgaccggca ctcacacaaa
      481 aagcagcgta gtcgggatgt tccgggccga ctaaaatggt tttgaatcct tggcgggatt
      541 tatcgtcatc gtgcaaatag agtttgagtt ctgccattcg ttcttgggta tagctgagcg
      601 tgcctttagt acctgtaacg acataggtca gccccatttt acgcccgcag gaaatgcggg
      661 agctttcgag cgtgcccatt accccattag caaatcgtat gagactactt gcctgatctt
      721 cgttttctac tttgattttt tctgctggat tgtgcggact agggcgttct tcaatcactg
      781 tttgcatatc gccgataaca cgctcaatgt ctgaaccaac caaatagtgt gcgatactga
      841 caatatgtgc ggctaaatct cccaacgtac caagcccggc tttggctttg tagcagtgcc
      901 aatcaatcgg ggtattaggg ttggcgagat aatcttcgtt atgcgtgccg tagaaatgca
      961 ccacctcacc aatttcgccg ttttgaataa tttggcgagc cagttgggtg gttggatttt
     1021 tgatatagtt gaaaccgacc aaggttttaa ctcccgcttg ttgagcggca atcaccattt
     1081 ctttggcatc ttgggcggtg agtgcaagcg gtttttctga atagacgtgt ttgccgtgtt
     1141 taatcgcttc taaggcaatt tctttgtgca gaaaatttgg tgtacaaatg tccaccacat
     1201 cgacattcgg atcggtaacc aattttcgcc aatcgtcagt agcacgctga aagccaaatt
     1261 ctcgggcttt ttgatcggct aatgcttggt tgatttcggc aaggtattcc agttggattt
     1321 tgcctttaag tggaaacagg gttggggctt gagcgtaggc aatggcgtgg cagcgaccga
     1381 tatagccggt gccaactaag ccgattttga tggttttcat aatactatcc cagtagggtg
     1441 cgtttgctaa cgcaccatta gaattttcag tgcattggca aacgcaccct ataagaaagc
     1501 ggtctggttt tgcaaaattt ttacaaaatc agaccgcttg tgttagctat ctataatgct
     1561 cctcgtctgc tcttcgcata ggtgtcgaag gcaacggcaa ggatgatgat taagcccata
     1621 atgatttgtt ggtagtaagc ggaaacgtcc attagtacta aaccgttaat caatacaccc
     1681 ataataatgg agccgatgat ggtgcctgtg actcgtccgt atccccccat tagggaagtt
     1741 ccgccgataa ccactgaggc aattacacgt agctcaaaag aaacgccggc aacggattcg
     1801 gcactgccta aacgggcgga gagaatgaaa ccggcaagtc ctgccaatgc tccgatcacc
     1861 acataaacac tgactaaggt acggttaata ttcacaccgg ctaaacgggc tgcttccgga
     1921 ttgccaccta ccgagtacac atagcgtccc cagcgggttt tatgcaatgc gaagtaaccg
     1981 ataatggcga ctacggcaaa aatcactacc ggcaccggta cgcctaaaat atcgccacgt
     2041 ccccaccagc ggtaaccttc gtcaaatccg gcaattggcg agccgttatt taacacaagt
     2101 gttaaaccac gccaaattgt cataccgcca agcgtgataa taaacggtgg cagtttgagt
     2161 ttagtgacgc ctaagccgtg taaccaacca atgaaagtgc ctaaacctaa acagatactc
     2221 aaacctatca gccagctcat tccgccccaa gcaccggctt ctagcgttac cgtattatcg
     2281 cctttgataa tataggccgc gaacattgcg gtaacagcaa ggattgagcc gacagagaga
     2341 tcgatccctg cagttaagat gacgaaagtc attcctaccg ccataatgcc gaaaatcgac
     2401 acttcggtta aaacgttata gatgttgcgt tgcgataaaa atgccccgtt ttgtgaagtg
     2461 aagaaaataa tcagtaagat caagaaaatc agtacgccga aacgttcaaa gaaggcgata
     2521 aaatcgattt ttcctttgtc atcgaccata cccatatttt ttagaaattg cgttgtcata
     2581 caaacctctc ttatgctgcc gctttacgct gaacgccaac agccatcatt gacattaatt
     2641 tttcttcggt ggcatcatcg ccgtgaattt cgccagttac ccgaccttcg gaaagagtga
     2701 taatgcggtc ggaaatcgcc ataatttccg gtaaatcgga ggaaatcact aataccgcaa
     2761 caccttgttt tgccatatca aacagcactt ggtgaacctc agattttgcc ccaacatcaa
     2821 tacctcgtgt cggctcatca acaattagta ctttcgggtt gagtgccata caacgggcta
     2881 aaatcacttt ttgctgatta ccacccgata atttgcgggc ttcaagttcg ctacttgcca
     2941 ttttgatgcg taacgcttgg cggtaggttt cgattaaatc atcttctttt tgattatcga
     3001 caaacaagtt acccttcaat aatttgctta aaatcggcag ggtcatattg gttttaatcg
     3061 gtaaaccgag aactaagccc tcttttttgc gatcttccgg cacaagggca accccttttt
     3121 ccaaagcatc taacggcgag gtggcagcat aaggcttacc gtctaggctg atttcatcag
     3181 ccgtataatt ttctacccca aacaagcaac gggcaatttc agttcgccct gcgccaacta
     3241 agccggcgat ccctaatact tcaccctcgt gaatgttaaa agagacaccg tggagagcaa
     3301 tgccgtgtgg atcgaatgcc ggtttttccc gatgcagatt tttcacagct aaacgtattg
     3361 gtcggtgggt atggtgagtc tcttctggtg gacggcgagt aaaggcaact tcacgtccta
     3421 ccatcatttt aataatttga tcgacattca catttttgac ttcaccctca ccagaatagc
     3481 gcccgtcttg gaaaacggtg aaacggtcgc atagggcaaa cacttcgttt aagcggtggg
     3541 tcacataaat cacgctaatg ccacggcttt ttaaatcacg cacgatttgg tgtagtgttt
     3601 ccacttcttt atcacttaag gcagcggacg gttcgtccat aataatcaac ttagcgttta
     3661 aggtcattgc acgggcaatc tcgaccatct gctgttgtgc cacacttaaa cgggaaactt
     3721 gggtgtcagg tttgatattt aagccgagat tatccagcac taattgtgct tcctcattca
     3781 ccgctttttc attgacgaat aaacctttca ccggctctct gcccaaaaag aaattttcag
     3841 caaccgtcat attcggtaac aagttaaatt cttgataaat cgttacgatg cctttgagtt
     3901 ggcgatcaaa cggggaatcg ctcaaactta aggtttcacc gttaaagata atttcgccac
     3961 ttgtttgtgg ctgagcgcct gaaagtgctt ttaataaggt cgattttcct gcaccgtttt
     4021 cacccaacaa tgcgtgaact tcgccttttc ccacagtcag tttcacgcca ttgagtgcca
     4081 taacaccaga gaaacttttt gtcagatctt tcacttcaag taagggagta gacatacaac
     4141 ctccgtaaaa aaacgccctc cggcctcagc cggaaggcag ataaattatt cgctgatttc
     4201 tgcaaaacgt tctgcttctt gcagattatc tttcaggata atttttggcg gatagtccgc
     4261 accgctcact tctttgctct cacggatatt gccaaccact tgctctaatg cggtgcttac
     4321 cgcaaaactt gggcgttggt cagcggtgag atacaaccag ccatctttca cacgtgcaag
     4381 agcctcaggg gttgagtcaa agccggttac taaaatatcg ccggctttca aaccttggct
     4441 acgcaatgct tcaatcgcac caagtgccat atcgtcattc gctgaaataa tcacttctgg
     4501 tttctctttt aaggttggta acacactttc aataatgcgt aatccctcag aacggagcca
     4561 gttaccggtt tgatcaacca cgattttata tttgtcacca ccggcagcta attcatcacg
     4621 aatacctttg gtacgttcaa tgttagaggt tgaacccggc tggccggtta aaagaataat
     4681 ttttgcccca ttcgggtatt tggctttcac tgcttttgcg acttcttgac cgcctgtgta
     4741 gttatttgcc ccaaagtgtg gaaccggctt actgctttca acttttcggt ctaatgtcgc
     4801 agcaggaatt ttttctttga taatttcttc cactgcacct gaaatcgcat tcacatcatt
     4861 cggggaaatg ataatgcctt tagcaccacg ggtaattgca ttttctaagt cagaagcctg
     4921 cttagtagaa gaactttgcc cgtctaatac ttgcaatttg atctccaact ttttactggt
     4981 ttctaccgct actttttgta gttgaacttc aaacgggctg gataggttcg gtaagctaaa
     5041 taccacaagc tcatctttcg caaagctgtt cattgctaag cctaacgtta aagcactcaa
     5101 tacaaattta atacgctttt tcattacaaa atcctctttt taagatggga attgacggcg
     5161 aatattgcca atgttacttc aaactgcgaa ggaaacttaa gtcttatttc aataataaac
     5221 ctcaatgaaa taaatttttc aatttagaat atatcattca aaattttcca aaccaaatgc
     5281 tttgtttcaa atttgttacg tagatcacat ttttaggaag agataaatgc aagcggtcaa
     5341 aacaggtcgc ttttttgcaa aaatttgaat aaaaatgacc gcttgtgaga tgaaaaccaa
     5401 taaaaaagcg gtgatttctc accgctaaac actcaaaaaa gaaatgtact cgttattata
     5461 aggttgggaa attaaatgcc gcttggctac gcaccgagct gtccggccaa cgggttgtga
     5521 tggttttcat acgggtgtag aaacgcacgc cgtctgtgcc gtacacattg agaggcccga
     5581 aaatagaggc tttccaaccg ccaaagcagt ggaacgccat tggcacagga attggaatat
     5641 tcacgcccac cataccggct tgtacatctt gggtgaattg acgtgctgaa tcgccatctg
     5701 cggtgaaaat tgcactacca ttgccgtatt ggtgactgtt aatgagtgcg atcccttcgg
     5761 cataatcttt cacacgcaca acagagagaa ccggtccgaa gatttcatct tgccagatgg
     5821 tcatttcagg tgtcacgtta tcaaacagcg tacctccgac aaagtaaccg ttttcaaacc
     5881 cttcgacttt atagcctcga ccatcgacac agagtttcgc cccctgtgcc accccttgat
     5941 cgatatagct ctcaattttg gctttatgct ctttggaaat caccggcccc atatcatttt
     6001 caagcacgcc ttgtggtagt aagcctgaac cgattttcaa tgctttgacc ttaggaatta
     6061 gctcttcaat gattttatcg gctaattcat caccaacaac taccgctacc gatagtgcca
     6121 tacaacgttc accggctgca ccaaatgctg cgcccagtaa ggcattaatt gtgccttgta
     6181 catcagcatc cggcataatc aaagcgtggt ttttcgcacc gcccaaggct tgaacccgtt
     6241 tgccgtttgc tgagcctttc tcataaatat attgtgcaat tgcagttgag ccgacaaaac
     6301 tcaccgcctg aatgcgagag tcggttaaaa gaatatctac cgcttcttta tcaccttgca
     6361 ccacattgaa tacaccgtcc ggcaagccgg cttcttttaa taattctgcc aagcgaatag
     6421 acacacttgg gtctttttca gacggtttta aaacgaaagt gttaccgcaa gcaagtgcca
     6481 ctgggaacat ccacatcggt accattgccg ggaaattgaa cggggtaatg cctgccacta
     6541 cgcccaacgg ttgctggatt gagtgaatat caatgccacg ccctgcattg gcggagaact
     6601 cacctttttg taagtgtgga ataccagtgg caaattccac cacttctaaa ccacgggtta
     6661 attcgccaat cgcatcggaa tagattttgc cgtgttctga gctgattaaa cgagccaact
     6721 catcaaagtt tgcttccaat aactctttga atttaaataa aattctggca cggcgtagtg
     6781 gtgattgttg tgaccagctt ttgaaagcct gatcggccgc tgcaattgcc gcatcgactt
     6841 cgtttggcag gcttaatttg acttttttgg tctcttcacc ggttgcggga ttaaataccg
     6901 aggtaacacg ctggctttgg ctttcaacga ctgcaccgtt aataaaattt tggacaaatt
     6961 ggctcattgg aggctcctta tcaactgatt gagaggaaaa acggataaaa tacagccgat
     7021 aaactaccgc t
//
LOCUS       DANLXK010000122         6917 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.123, whole genome shotgun sequence.
ACCESSION   DANLXK010000122 DANLXK010000000
VERSION     DANLXK010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6917
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            61..492
                     /locus_tag="PXD88_002164"
     CDS             61..492
                     /locus_tag="PXD88_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL6281701.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            479..946
                     /locus_tag="PXD88_002165"
     CDS             479..946
                     /locus_tag="PXD88_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL6281702.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            949..1716
                     /locus_tag="PXD88_002166"
     CDS             949..1716
                     /locus_tag="PXD88_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL6281703.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            1713..2519
                     /locus_tag="PXD88_002167"
     CDS             1713..2519
                     /locus_tag="PXD88_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL6281704.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            2519..3556
                     /locus_tag="PXD88_002168"
     CDS             2519..3556
                     /locus_tag="PXD88_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL6281705.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            3646..4866
                     /gene="agp"
                     /locus_tag="PXD88_002169"
                     /pseudo
     CDS             3646..4866
                     /gene="agp"
                     /locus_tag="PXD88_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628146.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucose-1-phosphatase/inositol
                     phosphatase"
     gene            5174..>6917
                     /locus_tag="PXD88_002170"
     CDS             5174..>6917
                     /locus_tag="PXD88_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDL6281706.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFSDIYAERFIIYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLRE
                     QDSRFEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYL
                     NLSEIHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVD
                     DIEKNYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKR
                     YFSDYILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYAT
                     SLNEVFYHAYQYDEVLPSIKSIEIEAQYRLNEFHLEQEYLNYEQIILENKQDKIKLFY
                     QLNASVEKFEIYYFK"
BASE COUNT         2159 a         1246 c         1450 g         2062 t
ORIGIN      
        1 ccttgtttat ctgtataaca ttttatttaa tagaatgact tataaatcaa ggagtgactt
       61 atgtctaatc aaattgcgtt attgttgatg agccacggca gttttgcgag ggcggcgttg
      121 gcgagtgccg agctgattgt cgggcagcag gaaaatgtgg cagctatcgg cgtagtagca
      181 gtggataatg tagcggacat taaacggcag atggagcaaa ccattgctga gttaaacacc
      241 gacaaaggct tgattattct caccgatatt gttggtggta cgccgatgaa tcttgcctct
      301 tctcaattaa cccaccctaa tgtttttgcc tgttcgggtt tgaatttacc tttattgcta
      361 gaagtgctga tgagccgtga cggcaatttg caagaaattc gggaaaatct accgcttgca
      421 taccaaaacg gatttagcct acgcacacaa caagattttg tttcacagga ggacgatgat
      481 gatctgcttt agccgtattg atgaccgttt aattcacggt caagtagtca ccacttgggt
      541 taatttacac cgtattgaac aaattattgt gttaaatgat gcggtggcag cggatccaac
      601 ccaaaaacag attttaacga tggcagcacc gcagggaatt aaagtggtcg cgtttggcat
      661 tgaaaaattt ggtgaagtgt tgcagaagac acaaattacc cgccgtacta tgttgttgtt
      721 taccaatagc attgatgtgt tacgcactgt agaactaggt gtatcgattg acaaattgaa
      781 tgtcggcgga atgcgttatc aagctaggcg tgagcagtta agtaaagcgg tttcagttac
      841 gccagaagag cgtcaagcat ttaaaacctt attggaaaag ggtgttgaag taacggtaca
      901 gatggtaccg aatgatgaaa aacttaactt acaggagatt atctagctat gctgactgca
      961 ctacttgttg cctgctgggc aggtatttgt gccttagatg atattggcac acagatgatc
     1021 cgccgtccgt tgttaatcgc accggtggtc ggattgatta tgggggattt ggaaacggcg
     1081 ttgattattg gtgctacgct tgaagtgatg tggatgggga tcggcaatgt tggtgcatat
     1141 tctgcaccgg atatgatttc cggaaccgct attggcaccg cacttggtat tgctgctggt
     1201 gaagcttcta ctgcggttgc actcgcagta ccgacctcac tcttggcaca gcagttactc
     1261 attctttacc gctccggcgt atgtgcattg aacccaattg ctgaacgctg ggcggcaagc
     1321 ggtgattttg acaagatttt ccgcattcac tatatcccaa tgttaattgc cttttctatt
     1381 cgtgctattc caacgttctt agccgtctat tacggggcgg acattattgc ccaagcggtc
     1441 tctgctctgc cggcaaaagt gattaccgga ttaaatgttg caggcaaaat tattcctgcc
     1501 atcggtatcg gtttgctgat gttaatgatg attaagaaag ccgaactttg gacgttctta
     1561 attgctggct ttacgttggc ggtttatctc aaattatcag tattgccgat taccttaatt
     1621 gcactaccgc ttgcgttgat ttacgactta gcagtaagca aaaaagctga agctgcacca
     1681 accaaaaccg cagatgaaga ggattatgac ctatgagcaa taaaattacc aaacaagatt
     1741 taaacaaagt gttttggcgg atgcaggtgc tgaacgtcac aaacaacttc caatcgatgc
     1801 aggcgattgg atttttaagt agctttattc cggtattaaa acgactttat aaagatcgtc
     1861 cacaggaaga acgagcggaa gcaatgaaac gccacttaaa attttttaac agccacgtta
     1921 attctgatgc attgatttta ggaattgccg ctgcggtaga agagactacc aaagaggatg
     1981 aaaaagagac agtaaccgcg attaaaaccg gtttaatggg gccgttagca gggctgggag
     2041 acagcttgtt gaaattcacc tggttaccga tttgcggtag tatcggggcg gcattggcac
     2101 taagtggcaa tgtgttaggc ccgattttaa tgttcttgtt gtataacagt gtaaacattg
     2161 cgacgaagta ttacggtatc catctaggtt acagcaaagg ggttgattta attcacggtg
     2221 cgggtaataa cattttgcaa cgactcggca atatggcaaa tgtggttggt ttaatggtga
     2281 ttggcgcatt aattgcctcc gttgtgaaag tcaaagtagt ttcacaaatt gccgctggtg
     2341 ataatgtgat taaattccaa gagatgttag ataaagtgat gccgggacta ctcagcttac
     2401 ttttaactgt cgtgatctac tggattttga agaaaactaa cggcaaatat gctgcaacga
     2461 tgatccttgc tacgatgggg atctgtatcg gcttagtcta tgcaggaata ctcggctaat
     2521 ggacagtgtg tatgacatta ttcggttgga acagggcaga tacctgttcc gccaacagcc
     2581 ggctcaatcg gtacagattt tctttctgga caaccctgac agtaaggata gcaaatggct
     2641 ggcggagact gatttggcag agtttgagct gaaattgagc gcttgtgaag cccgtccgtt
     2701 cttcctcatt caatcagcaa acggagaaca gattgttgct gaacgcacct tacctgttgc
     2761 cggaatgaat aattttcggg atatgggggg ctatgtcgct catcagggca agcgagtgaa
     2821 atggggcaag ttataccgct ccgatcatct gcataattta agagacgaag gcgtggctta
     2881 tcttgataaa ttgggaattc agactgttat tgactatcgc agcccgaatg aagtcgccaa
     2941 atacccaaat cccccaatta atggcagaga gcaaactttt cggcttgatc cgaatgcaca
     3001 tactgccgag cttgctgccc aatttagtgc agacaagcac gatgaagatc gtaatttggt
     3061 caataaaatc attgctcaaa aagctgaagg taatcttatc aatcgctacg acattgtaat
     3121 ggcacaatat cgtaattttg tcgaaaaagc agaatgccaa accgcctttg ctgaaatgtt
     3181 aaggttggcg acagaccctg aaaatgcacc attggttcaa cactgccgtg gagggaaaga
     3241 tcgcactggt ttcggtgcaa tgttactgct tggtatttta ggcgtgagta aagctgatat
     3301 tattgctgat tatatgctta ctcattataa ccgccttgct cgtaacgaag agaaaatggc
     3361 gatttaccgt accttcactc aagatcaaga tgtgttggac tacctattgt ctttaatcga
     3421 tactcaaccc gaatttatcg aacaatcgct taatactatt gaaacccaat atggtactat
     3481 tgagcaatat gcccaaaggg tattaggtat tactgcgaag gaaattgaag cattacgggc
     3541 aaattatttg gcgtagaacg gtagggtgta atattgaaca cactacaaat ggagaaattt
     3601 catatgcgtt attttgcaaa acattggtat aaaactaccg cttgtctgac aacaattttc
     3661 acagcatttc ctctttttgc tcaaccaatt gaaaatatac caacttccca ctacgaatta
     3721 gaaaaaatca ttatatttag ccgacacggg ttacgttccc ctcttacaga aaaaggcagt
     3781 gatttagaaa aatcaacccc ttataaatgg gcaaattgga gtgtaccgac cggtcattta
     3841 acccataaag ggacgctgtt ggaaacctat tttgggcagt atcttggtca atggctcaca
     3901 cataatgggt tattggacaa ggcaagctgt gaaagtggga agcagattga ggtttatgct
     3961 aatagcctgc aacgtacaat tggcactgca caagctttgg ttgccggtgg gttttcaggt
     4021 tgtaatgtac aagttaaaca ccaccagcag attggaaaga tggatccggt gtttaatcca
     4081 attattcgct ccgatgacca gacatttgtg caaacagcat taagcaaaat tgacctcaat
     4141 aaaacccatc agtatttagc gccatcctat catttattaa gcgaaataat cgattatgct
     4201 cattcagaaa aatgtttgca ggaaaaacag tgtgaatttt ttaatgatgt tggtaaatta
     4261 aggattaaaa aggataaata accaggtgtt tccggtacga tgcgattaag taaaaatatt
     4321 gtcgatgcct tattgctgca atattatgaa ggttttcctt taaaagagat tgcaaataac
     4381 cagcttgata gtgatcagaa atggcaaaca ctcaataaaa ttaaaaacga ttaccaattt
     4441 atgctacgag gagatccatt tattgctaaa catatttcat taccgctatt aaaatatatt
     4501 cagcaagatt taaatagtga aaataaaata acacttttag tcggacacga ttccaatatt
     4561 atagccttac tttctgcatt aaatgttaag ccttataaat tagcacatca atatgaacaa
     4621 actccaatag gagggaaagt ctttattgaa atctggaaag aaaaaagtag ccaagcacaa
     4681 aaagttaaac tggaatatgt atatcaatct actgaccaaa ttcgtaaagc gattccacta
     4741 agccttgata aaccaccgca acatcacatt ttgagtttgg attattgcca agctgaccaa
     4801 tatggattat gcgattatat ggaatttaaa cagttactgg aaaaagtcat tgctgataca
     4861 ttgtgagatt ttgacaaagt gagtgaaaaa ggtagcataa aaaagtcggg acagttgcca
     4921 gctgctccct gtaagatgtt gtttacagca ctagtaatgc tactatcccc aaaaagctgc
     4981 tgaaaggcag cttttttgtt gtatataaaa gtacaccttt ctacgcttca ttctttttct
     5041 ccaattaaac ctaatttagg acttctagtg ataaattcgg tatcatatct taattcacta
     5101 catatcgtgc aagccttaaa attgaaaggg ctgacgaaat cctatttaat tctgacacac
     5161 ataagggaat attatgtcgc aagatattca agccgattta aaaaagatat tggcactatt
     5221 aagccgtaac cgtcgatttc aatcattatt tttattactg ttaagaagtg aacaatttat
     5281 taatagtgat gcactttcta cggagttaca gctttcagta cgaacggtaa aaaaagagat
     5341 taagttatta aaagaaaaac ttgaacctta cggcattcag attttttctc gaccgtttta
     5401 tggctataaa ttattgattc agtttgaaga attacacacg caactaaaac agtatttcca
     5461 aatatcacag ccgatgacgg taaataataa atttgagtct cgggtaaatg cgattttacg
     5521 ccgattactg gtgagccagc gtgcattgaa agttgaagat tttcagagtg agctttattt
     5581 aagttttacc agtgccttaa caaaagaatt tagtcaagtt aaagccttgt taggaaaata
     5641 tggattgata ctcgaagcga aaccctatca cggaatgaac attgtaggtg aaagttatcg
     5701 taaaataatg ctcacagtac gattatataa atattttacc cagcttgaac atccatttgg
     5761 aattaaagaa tttgaacagt gttttgcttg tcctatgact gaaaaaatcc gtgaaaggtt
     5821 agctaagaca attattcatt tcaatttagt attttctgat atttatgctg agcggtttat
     5881 tatttactta cgctattttt ataatcaaca gcctgagtta ttgttaccga agttaaattt
     5941 taattatcaa cagacgaatg aatatcagtt tgtaattaag ttactggaac agcttcgtga
     6001 acaagacagt cgttttgagt ttaatccgga agttattcga tttctgacct atattgcgat
     6061 agccagtaca gatctctacc gctttaaaga ttgtaattcg gataattacc cattgttgct
     6121 agataaggct tgggaaattc atcgttttat ttttactcag ttttctgcat atttaaattt
     6181 atcggaaatt cacgatgaca cttgccgtaa agatttgctt aaaatgctga tccctatcgc
     6241 aatgaaaatg atgcttagca tttcagatga tgtggattta gggctattta accaaacaga
     6301 actacataga aatccaattt tggctcatac agtagaaaaa ttagtggatg acattgaaaa
     6361 aaactacggg tatagcctat ctattcgaga acagtatttt atttttgata ttttttccgg
     6421 aatggttaat cgaattgaat tagaacgtaa accgctccga ctggcgatta ttgcccttaa
     6481 tggcagatta agcacccaac agttaaaacg gaatattaag cggtactttt ccgactatat
     6541 tttgaaaatt gaaaccaaag tgctatatga gcttgccata atggaagata aaccttatga
     6601 ctactatctc tgtaatgaat atggaaaaaa tatggctatt ccctataagc ctatttattt
     6661 tgctgacagt agtttaaatg aaaatgaata tgcaacatca ctcaacgaag tattttatca
     6721 cgcttatcaa tatgatgagg tgttgcctag cattaaatcg attgaaattg aagcacaata
     6781 tcgcctaaat gagtttcatc ttgagcaaga atatcttaat tacgaacaga ttattttaga
     6841 aaataaacaa gacaagatta aactatttta tcaactcaat gcctcggtgg aaaaatttga
     6901 gatctattat tttaaaa
//
LOCUS       DANLXK010000123         6912 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.124, whole genome shotgun sequence.
ACCESSION   DANLXK010000123 DANLXK010000000
VERSION     DANLXK010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6912
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            66..2672
                     /gene="topA"
                     /locus_tag="PXD88_002171"
     CDS             66..2672
                     /gene="topA"
                     /locus_tag="PXD88_002171"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL6281707.1"
                     /translation="MGKSLVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDE
                     KTEKAKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSE
                     LKSLAKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDD
                     PQPLNIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREI
                     KAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSN
                     IEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLS
                     REALAMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKD
                     AERLYDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKN
                     PEDQELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIIS
                     TIQERGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNW
                     KEELNTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLG
                     CTGYALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAE
                     RKLHVCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCD
                     NTRKILKNGEVAPPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAP
                     KVVELAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIV
                     DYLDGKWVERKK"
     gene            complement(2722..3660)
                     /gene="yvcK"
                     /locus_tag="PXD88_002172"
     CDS             complement(2722..3660)
                     /gene="yvcK"
                     /locus_tag="PXD88_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL6281708.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(3674..4750)
                     /locus_tag="PXD88_002173"
     CDS             complement(3674..4750)
                     /locus_tag="PXD88_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL6281709.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(4781..5536)
                     /locus_tag="PXD88_002174"
     CDS             complement(4781..5536)
                     /locus_tag="PXD88_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6281710.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            5688..5897
                     /locus_tag="PXD88_002175"
     CDS             5688..5897
                     /locus_tag="PXD88_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL6281711.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(5946..6668)
                     /gene="bioD"
                     /locus_tag="PXD88_002176"
     CDS             complement(5946..6668)
                     /gene="bioD"
                     /locus_tag="PXD88_002176"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL6281712.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
BASE COUNT         2198 a         1269 c         1452 g         1993 t
ORIGIN      
        1 aatcaactta aaaagaaata atttcaaaca atttaaaata attattaaaa attaggtaat
       61 aaattatggg aaaatcacta gttattgtgg agtctccggc taaggcaaaa aaaattaacc
      121 aatatcttgg tagtaattat gtggtgaaat cgagtgtggg gcatattcgt gatttaccga
      181 aaagtggtag tgatgaaaaa acggaaaaag cgaaaccgat ttcaaccaaa gggctgaccg
      241 ctgccgaaaa agctaaaatc aaagcagaaa aagagcgtgt tgcattggtt aaacgtatgg
      301 gtatcgaccc ctataatggc tggaaagcta actatcagat tttgccggat aaagagaaag
      361 tggtttccga gctaaaatcg ttggcaaaga aagcagatca tatctatctg gcaaccgact
      421 tggatagaga aggggaggcg attgcgtggc atttgcgtga aatcattggt ggtgatgaca
      481 gccgttttag ccgagtggta tttaatgaaa tcaccaaaga tgcgatcaaa aaggcttttg
      541 acgatccgca accgctcaat attgaccgtg taaattccca gcaaacccgc cgctttttag
      601 accgtgtagt gggctttatg gtgtcgccat tattatggaa aaaagtagct cgtggtttat
      661 cggcagggcg tgtgcaatcg gttgccgtaa aattactggt tgagcgtgag cgtgaaatca
      721 aggcgttcca aagcgaggag ttttggacta ttcttgccaa tacgcaaatt aatcgtaaaa
      781 aattaccgct tgaattaact acttataaag gtaaaaaatt ctcggcaagc aatgaggctg
      841 aagcaaatgt tgcagtgcgt gctttggagc agagcgattt tattgtttct aatattgaag
      901 ccaaagaaac cagctctcga gctgctgcac catttattac ctcatcgtta caacgtgccg
      961 ctagcactcg tttaggtttt ggggttaaaa agacgatgat gttagcccaa cggttatatg
     1021 aagcgggtta catcacctat atgcgtactg attcaaccaa ccttagccgt gaagcattag
     1081 caatggctcg aggttatatt caggataatt tcggggcgaa ttatttgccg gaaaaagcaa
     1141 atgtgtatcg cagtaaagat aatgcccaag aagctcacga agccattcgc ccgtcggatg
     1201 tgaatgtcaa aatggcggat ttaaaaggaa tggataaaga tgccgagcgt ttatacgatt
     1261 taatttggcg tcgtttcttg gcgtgtcaaa tgttgcctgc tcgttatgat tctaccgcag
     1321 tcacagtgtc tgccggagac tatgaactca aagcaaacgg gcgtgtactg cgttttgacg
     1381 gctggacgaa agtactgccg gtgcaaggca aaaatccgga agatcaggaa ttaccggcgg
     1441 ttgaactgca tcaaaaatta acgcttgatg aaattgtgcc aagtcagcat tttactaaac
     1501 cgcctgcacg ttttaatgag gcgtctttgg ttgctgagtt agaagagcga aaaattggcc
     1561 gcccttcaac ctatgcttca attatttcga cgattcaaga acgtggctat gttcgcaccg
     1621 aaaacaagcg tttttatgtg gaaaaaatcg gtgaagtagt gacggatcgc ctcaacgaat
     1681 cattcaaaga tttaatgaat tatgatttca ctgccaatat ggaagaggtg ctcgaccaaa
     1741 ttgcagaggg gtctaaaaat tggaaagaag agttgaatac tttctttaaa catttctctg
     1801 aagagttgag ccaagcagaa ttagatgaac ttgaaggcgg aatgaaacca aacagccttg
     1861 tgccaaccga tattgattgc ccgacttgtg gacgaaaaat ggcaattcgc accgcttcca
     1921 caggggtatt tttaggttgc accggctatg ctttaccgcc aaaagagcgt tgcaaaacga
     1981 caatgaattt aattccagag gcggaatttt tcaatgtgtt agattcggat tctgaaacca
     2041 aagccctaat ggctcgcaag cgttgcccga aatgcgattc ggcaatggat agttatgtga
     2101 ttgatgctga acgtaaatta cacgtttgtg gtaataatcc aaattgtgat ggtcatatta
     2161 ttgagcaagg ttccttcaaa attaaaggct atgacggacc tgtagtggaa tgcgataaat
     2221 gcggttcaga tatgcactta aaactgggtc gtttcggcaa atatatgggc tgcacaagct
     2281 gcgataacac ccgtaaaatt ctgaaaaacg gggaagttgc tccgccaaaa gaagatccta
     2341 ttgcttttcc tgaattaaaa tgtgaaaaag ccgatgccta ttttgtatta agagacggag
     2401 caagtggggt gtttatgtca gctcataact tcccgaaagt gcgtgaaagc cgtgcaccaa
     2461 aagtggtaga gttagctcaa tatcgtgaac gtttgccgga gaaattgcag tatcttgccg
     2521 atgctccgca gcaagatccg gaaggaaacg aggcaattat ccgttttagt cgtaaagaga
     2581 aacgccaata tgtgacttct gagaaaaacg gcaaagccac caaatggatt gttgattatc
     2641 tagacggtaa atgggttgag cgtaagaaat aaagcttaaa agacaagcgg taaaattttc
     2701 taaaaatttt accgcttgct tttagatgtt ctgagcgagt agttcatcaa ttgctttact
     2761 taatttattg cgatcgtgtc ggtaataaac gtcattcgca gataagtttt ttcgcaagat
     2821 ttgaatatgt tcgggaagtt cagaaccggc atcatcagtc gtaattaccg cattaattct
     2881 agcctgtccg atacagttct ccatccattc aattcgctga ttaagtgata gttgcccagc
     2941 tgggccatgt tcttgtccga tattgtcaat aaatactact cgggctttgc tttgagcaat
     3001 agagtttgct atgcctgcca ccagcaaatt cggcataata ctggtaaaaa agctacctgg
     3061 gcctagcagt attaactcag cactttgaat agctgaaatg gcttctggtg tagcaacaac
     3121 catagtatct aacgctaaat gttgtggtgt ttctgctaaa gaatcaattt gcacttcacc
     3181 aaatactgat tcgcctgaat gcaactgtgc aattaaatgc accggtattt cagacattgg
     3241 gataagttgc gatcttacgt gcaataattc tcgcaccaaa ttaatccctt ctagcggtcg
     3301 gatttgcata ttttcaaggg cggtgagaat taaattgcct agattatgtc cagcgagttc
     3361 gcctgtgcca gcaaaacgat actcaaacaa ccgagaagct atcgttggtt taacgataat
     3421 ttgatttaaa cagttgcgta aatctcccca agcaatcacc ccttgttgtg aacgtattct
     3481 accggttgag cctccattat cggtagtggc aacaatgccg gtaagccgtt cctttaaaaa
     3541 agagagcgcg gagagcaatc gacctaagcc gtggccccca cctagtgcaa caactgcatt
     3601 gagttggttt aaatagtgat gtcgggtagg tttaaaagga ataatatctg tattttccat
     3661 cttgggattt cgtttatttt tctaaaataa tggcatctga ctgggctgaa ggcaatgctt
     3721 gtaatacagc tttaaccaaa gtcgctaaag gaatcgcaaa aaacactccc caaaagcccc
     3781 ataaaccacc aaagatgagt acggcaataa taattgtcag agggtgtaga tttactgctt
     3841 cagaaaataa aaagggtacg agtaaatttc cgtctagcaa ctgactaata ataaatgcga
     3901 gcattaaata gtagaaatcc ggcgataacc cgaactggaa tagagcaatt aacattaccg
     3961 gaatgctgac taaaaccgca ccgatgtagg gaactaacac tgaaatccct accgctacag
     4021 aaagtagtaa cggatagcgt aaatcaaaaa agaggaaaat aatataagtg acaaccccaa
     4081 caattagaat ttctaaaaat ttacctcgaa tatagttggc aatttgttgt tgcatttcaa
     4141 accatactcg tgttgcaagt cgacggtttt gcggtaatac tttactaaaa gaacgcatta
     4201 aaacgatttt atctttcagt aagaaaaaga ccatgagtgg gactaagaag gtgtaaatgc
     4261 ctaagccaac taagctgatg atagagttaa tcgagagtgt tagaagtgat tctcccatac
     4321 tcaaaatatt acttttagcg gtattcacaa tggaatctag ggtcgcataa tctactaatt
     4381 cagggtaatg ctccggtagg gcttgtaacc aagcattgag cagattaaac atcgaaggta
     4441 aatcttgaat aaaggtaact gcttgattcc aaaggctggg tagtagtact acgcctaaaa
     4501 aagataataa agcgatgaaa cctcctagta ctagaatgac actcaaagtt cgaggtaatt
     4561 tgagtttgct cgacaaaaaa cggattggcc attccaataa ataggcaaac acaagtgcaa
     4621 ccagaagggg cataagcaga tcgctaaaaa aatagataat accgaaaccg atcaatagaa
     4681 tactaaacag cacaactatt tgcgggtcgg taaatttttt tcgataccaa tcttgcaaca
     4741 tttgaaacat atggattgcc tttaaattat gcgatgaaaa ttatttctgg ctacagactg
     4801 caatgaaccc tagctttttg tccgggtcat taaatagttt gtacatttta ttaaaggttt
     4861 cgcgattttc tggttttaat gcattgccga taattttcat ggcgcctaaa acaccttcat
     4921 catgaatcag acctttaggg gaaagtagag acatttctcc ggaaaaggta tcaacattac
     4981 ggaaaccaca acgttggaat aatgatttcc agtctgcttt agcaagtgga gagacagtga
     5041 tattgattgc atcacgcaac tcggctaata aagtatcgga gtctttatct tggataacaa
     5101 tatcgtgcgt taataaaaag ccatttggtt ttaatacacg aaaatattca cgtattgcct
     5161 tttctttcgc ttctagagga agcattgtca gcatggcttc attaattaca atatcaaaac
     5221 tttcgtcgtc aaatggcagt tttgttgcgt tggcgcgctg tacttgaatt aaatgctcaa
     5281 catggttttc tttgatattt ttacgtgctt tttcaagcgc atcttcgtct aaatcaatac
     5341 caacaatttg gcattcaaat tgttgagcta attggattgc agtagtcccc atgttacagg
     5401 caacttcgag cactttttta tttttatcaa aatccccgtt tgcaattaac caatcagttg
     5461 ctaatttccc cccggggcgt aaacgagttt tgcctaaacg agctaaaaaa tgatgaccaa
     5521 cttcttcttt tttcataaaa acctctggat ttgcaaaata cgttaaatat atgaccgctt
     5581 gtattgtgat ctatgttcgt tattatactc aattttttca ttttcttata tacaacatca
     5641 acagattttg ccagaataca acctcatttt gatatgagga aaatagaatg agtaagcaaa
     5701 agaatgatta cctccaccag cgaggtcaaa ttaaagaaag tgcagtaaaa gcattagtga
     5761 ctgatccact ttttagacaa cgtgtagaaa gaaatcgtaa agggaaaggg agctatcgca
     5821 gacaagaaaa acacaaaaaa actatctatg ggcaaaaaga aaccccattt aaaaatattc
     5881 ggttagagtc tttttaaatg gggttttatt tgtagcttat tgtagtttta taagcctgat
     5941 aaacactatg gtttactgaa ataggccaac aacggttctg gattttgaat ataagaagaa
     6001 agttctttat gctctgggtg acccatatag ggaatttgcc caagtaaagg cgcattaatt
     6061 ttttgtgtca gtagttcaat taattcgtga taatgccgta gccctggatt tactctgttt
     6121 gcgacccaac ttactaattt tacaccacgc tgcaaaattt cattcgcagt aagtagtgca
     6181 tggttaacac aaccttcctt aattcccacc actaaaacaa ccggcatatt gttttgcatt
     6241 acccaatcag caaaatagta atccttgtta ataggagtta gccagccata ggttccttct
     6301 acgacaacat ttggataggc attttctagt cgttttaaat ctgtgtttaa tttttccagt
     6361 tgaatatgat gaactgcatc taaagctgca aatacagggg tactggaatg aataaaagta
     6421 tagctattaa tatcacgata gctaacatta gttggacagc tatctagtat ggttaatacg
     6481 tctgaattat cttcagtagc ataatcatat tgagtaggtt ctgtgggtaa tgaatcatca
     6541 ccgccacaag caatgggttt atagccaatt acaggaaaac tatgttttgt aagtgtctgt
     6601 atgatggctc gggtaaccac agttttccct acgttggtgt ctgttccggt aataaataat
     6661 gagggcataa atggctcctt tcgaaaatat ggctggtagt ttaaccaaaa atagatcaat
     6721 ttattctgtc tttgatcaaa tttccgtcat aaattccttg ttttattgct gaacaggcaa
     6781 ttaatggact attccaatcg tattggctgg taactaaatc gatttttagg tttgtttgta
     6841 acaaattttt atgcaatttt tctgaaattt gcgtaaataa cggctctttt attttgatca
     6901 atggcgagtt ta
//
LOCUS       DANLXK010000124         6890 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.125, whole genome shotgun sequence.
ACCESSION   DANLXK010000124 DANLXK010000000
VERSION     DANLXK010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6890
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(33..635)
                     /locus_tag="PXD88_002177"
     CDS             complement(33..635)
                     /locus_tag="PXD88_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL6281713.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(637..1656)
                     /gene="purR"
                     /locus_tag="PXD88_002178"
     CDS             complement(637..1656)
                     /gene="purR"
                     /locus_tag="PXD88_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL6281714.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(1792..2520)
                     /gene="cmoA"
                     /locus_tag="PXD88_002179"
     CDS             complement(1792..2520)
                     /gene="cmoA"
                     /locus_tag="PXD88_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL6281715.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(2530..3312)
                     /locus_tag="PXD88_002180"
     CDS             complement(2530..3312)
                     /locus_tag="PXD88_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL6281716.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            3431..3997
                     /gene="seqA"
                     /locus_tag="PXD88_002181"
     CDS             3431..3997
                     /gene="seqA"
                     /locus_tag="PXD88_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL6281717.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            4007..5425
                     /gene="menE"
                     /locus_tag="PXD88_002182"
     CDS             4007..5425
                     /gene="menE"
                     /locus_tag="PXD88_002182"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL6281718.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            5418..>6890
                     /locus_tag="PXD88_002183"
     CDS             5418..>6890
                     /locus_tag="PXD88_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL6281719.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLTEMIKSLNNQLNLLINIELNQQQVQTISDALQQKLQQQSFWVKSNNPID
                     LEWFSKFVDITHYQFIDIGKKLNFSNWRDNLLPASILVGIL"
BASE COUNT         2294 a         1396 c         1186 g         2014 t
ORIGIN      
        1 atctttttaa gatgaaatgc tcgtcttttg tttcactttt tatactgctt tttattttta
       61 taccatttcc agcctaaaaa tagaataaca atgcctaaaa tggcaaaaat gaggtgctgc
      121 ccattagcta cttgttcttt tagccaatcc aaattagatg ccccatagtc gcctaaataa
      181 acccaaattg gcacagagat aatagcggca cagaaatcaa ctaataaaaa ttttacgaag
      241 ctgacttttc tggtaatacc tgaaactaag taaaccaccg cgcgcaagcc aggtaaaaaa
      301 cgagccataa aaagtagttt ccatccttgt ttttcaaaac gttcttgcac ggttgcaaaa
      361 cgttcaggtg tcgcaacatt cctgattaat ggaaatttga gaattttttc gccatagatt
      421 ctacctagcc agtacattgt gctatcgcca actaatactc ctaacatact aacaaccagc
      481 atccaatgca cattggtgta gcctaatcct gaaataacac caccggatac taacgtaata
      541 tcttcaggaa tcggcacacc gaaaccacag gcaagtagca caagaaaaac agcccaataa
      601 ccatagctac taaaaaattc aatcaatgtt tccatattac tccttaatgt ttaaattccg
      661 aaccgattta cgtttgacca attcaggaaa gaactctaat actttaggct cttttgcgtt
      721 ttcgttatct tcaatacgtt ctaataataa ttctaatgct gccgagccta agcgagattt
      781 tgactgatgg attgtcgtaa gaggcggtgc ataaaagcgt gagctatgca cgttatcata
      841 cccgatcact gaaatatctt gcggcacatt cagccctttt tcggtaatag ctgaaattgc
      901 ccctagtgcc attgagtcat taaaacaaaa aaccgcggtt ggtaattttt cactgctctt
      961 aagcaaatta ttcatacact catacccccc ctcaggttca aaatcgcctt cttgaatcca
     1021 ttcttcacga atagacaaac ccgcctcaga tagcgctttt ttaaaacctt caaaacgggt
     1081 tcttgcaatt tctttatctc tattgccggt aattacagca atatcttgat gcccgttttc
     1141 aattaaatgc tgagtcgcaa tatagccacc ttcaacaccg tgatctaaaa taatatcact
     1201 gcgttcatca cttcgtcccc aatccataat caccattggg atattgctgt tttcaaagat
     1261 atcaaatgaa ttagctgtat attcggagca catcaccaaa atgccatcaa cccgtttttt
     1321 gatgagcata tctaaatgat tttgaatttt ctcaagtttg ttttgagtat tgcacaaaaa
     1381 tagtgaatac cctttgctat agcaaaattc ctctaccgct aacacaattt cagcgaaaaa
     1441 cggtgattcg ctggttgtaa tgatcatacc gatagattta gtcgtattaa ttttcaaact
     1501 ccgcgctaca gcactaggag aatagttcag cgctttaata gcctcccaaa ctgcttttgt
     1561 agtgtcctct gctacaaagc gggttttgtt tataacgtga gaaaccgttg tagtcgatac
     1621 accagcatat tttgcgacat cttttatcgt tgccatacct ttttcctcct aaataagtag
     1681 tggtgcatta taactgattc taactgactt ttattataaa gaaatagata gaatgcaagc
     1741 ggttgctttt tatcaagaat ttgcaaaaaa ttttacaaat atcaccgctt gttaggcttt
     1801 aattgcaatc attgagccaa aattaaagca ttgaaaccaa agttcaactt gtgtaaaacc
     1861 agcttcttgc agacgttttt tatgggtttc aatactatct gttcgcatca cattttccaa
     1921 agcattacgc ttttggctga cttccaattc actgtagcca tttgctcgtt tgaatgtgtg
     1981 atgaaggtcg atcaatagct cgttcatttc ctcactctca aaggtaaatt tttccgataa
     2041 cactaaaatg ccattggaat ttaatccttg ataaatcttc tgtaataatg ctaggcgatc
     2101 ttctcttggt aaaaattgca aggtgaaatt aagtaccacc attgaagcat ttttaatttc
     2161 aatgtggcga atatcatcaa gtaaaatcgt caccgggatc tcagagtgat aagcacttaa
     2221 atgggtttta caacgctcaa ccatcggctg agaattatct accccgataa tctgcacatt
     2281 cttcgcattc acattacggc gaatagataa aatccctgcg cctcgtgaac aacctaaatc
     2341 ataaacattt gaattatctg tgacaaaacg ctccgccaac attccaatag cagtaataat
     2401 attggaatag cccggcacgg agcgttggat catatccgga aacacttcag caaccgattc
     2461 atcaaaagta aaatcgccca atttctcaat cggagcggaa aataatgtat ctctttgcat
     2521 ttttctccct tatttttcta aaaatttatt gattgctctc acaacagttc ctgttttttc
     2581 tgcgtgaacc caatgatcag cgtttgccac aatgaaagat ttggcctgcg gaaattgtgc
     2641 caaaatcgtt tgtgtatgct ctgcttgaat ataatccgat aatgcacctt taataaacaa
     2701 ggtcggttta tccacaaata cctgctgcca ccccatcaca ttctgataat tatcttttag
     2761 cgcctgtaaa ttaaaacgga aagattgctc gctttgggca tcaaaagatt tcaacataaa
     2821 ctgttgcacg ccttcatctc gaatatattc agccattatc gctttagctt gctgacgatt
     2881 ctggggttta gcttctttca ccgcaaataa ggctgccata acctgctgat gccgattttg
     2941 ggtataagtg accggggcaa tatcaatcac taccaatttc tccaccagtt caggagcaaa
     3001 tgcagccaat gccatcgcac tttttccgcc cattgaatgc ccaaccacaa tagcattttg
     3061 gatatttaat tctgtgagta attgtgctaa atcttgtgca atcaaagcat aattcatttc
     3121 gtctgaatga aaagatcgcc cgtgatttct gagatcaacc attaaaatgg agtaacgttc
     3181 tgcgaatggt tttgctattg cgcctaggtt atttaaatct ccaaacaatc catgtaagaa
     3241 gatcatcgtc tgagcattag catgattatt cgaaggttgg taattaaagt ttaactgcga
     3301 tttttctgtc atataaatgt cattgttcat ataaattttc agcgatgttc ctctataaaa
     3361 aacaatagaa atgcgtataa tagcaagcac tattaacgca tttaataccc gcagatattt
     3421 gaggatcccg atgaaacgaa tcgaaattga tgatgaatta tatcagtata ttgcaagccg
     3481 tacacaatct attggtgaaa ctgcgtcaga tatattacgc cgtctattac gcctgccaca
     3541 atcgcctcag ccttttgttt tagtacaaga acacatgatc aacgagctta aagagcttgt
     3601 caaaacgcct tctcgtgcta cgaaaaaaaa tgaatccaat gcagaaaaaa ccgttgaaaa
     3661 attggaaaac attttaaatt ccgagcattt tatgaacgaa aataaaaatg tagtgcgttt
     3721 tactatgcta ttagccgcat tatatcgagc aaatccggag gcttttgcta aagcaaccga
     3781 aaaagtgcgt ggtaatgaac gtatctactt ttcgcaaagt gaagccgaaa ttttagctac
     3841 tgggagtgga gtaaaagcca agcagatccc agattcaccg ttttgggtaa ttaccaataa
     3901 taataccgca cgcaagggac ttattctcaa aggcgtaatg gaatccatga aagtaccaag
     3961 ccagttaatc gaacgcattc aagcgctttt tatctaatta attgaaatgc tcatcaattc
     4021 tactcgcttt cctacccaat tttgggctgc tcattcagcc caaaatgtgg cgattatttg
     4081 ggaaaaagga acatcagact atcttaacca ccttccatca aacatcactt ggtatagttt
     4141 gaatcagttg attgcgcaag ctattttcgt gttgcaacaa caaggtgcta ctccgcacag
     4201 tttgattgcc tattgtggtt ctcatcggct cattggcttg ctcacttatt gtgctagcct
     4261 tgctttgggg gctaagattc taatgcttaa ccctgctcaa acagcaagtc aacgacaagc
     4321 agtcttagat gacaatggtg ttgagctcat tattaatgat gccgactttg caaaattttc
     4381 agcaaaaacg accgcttgta atgccttccc tacgattgat tttgaaaaac cagctaccct
     4441 aaccctaacc tcaggctcaa gcggtaaacc taaagcagtg gtgcattcta tagcggccca
     4501 tctctatagt gccgaaggag tatgtgaatt aatggcattt gagcagccaa actcttggct
     4561 actgagcttg cctctgtttc acgtttccgg acaaggcatt atttggcgtt ggttatttaa
     4621 aggtgcaaca ctgtatgttc acgaagacaa aagtgatttt tttctttcag cacaaaaagt
     4681 gagccatctc tctttagtcc ccacccaatt acaacgctat ttaaaccaat tagattctat
     4741 ggtcagccaa aaatgtttac tgggtggatc tatgcttcca gccgaattga ttgctcaagc
     4801 acaacaatct gggatgacta ccttttcagg ctacggaatg actgagatgg catcaaccat
     4861 ttgtgcagta gaaaatgatt taaacagtgt tggttttccg ttaaaacatc gggaactaaa
     4921 attagaaaat ggtgaaattt gggtaaaagg caaatcactc ggcttaggct attggcaaaa
     4981 aaatgggcaa attcgaccgc ttgtaaacac acaaggctgg tttgccacta aagatcgtgg
     5041 cgaatggaat cacaaaaaac agcttgtaat aaaaggacga ttggataata tgtttatttc
     5101 aggaggggaa aatatccaac ctgaggaaat tgaacaactg atttttcgtt ctcagcttgt
     5161 cgaacagatt atcgtgttgc cgattgaaga taagcaattt ggacatcgac cagtggcgtt
     5221 cttacaattc aagcaatctg attcaaaaaa tgaactccat aaattaaaaa tttggctgtc
     5281 tgataaatta gaaagattca aacagcctgt tgcctattat ttactggata tagaaaaata
     5341 ccaaaaacaa ggcttaatta aactatcaag aacacaatta caacaagatt taaaactcaa
     5401 agtattaaag gaaatctatg tttagaccga ttttaaaaac atttgtgctt agtttaggct
     5461 taatgctaaa tagttatgca ttagctgaat tgccaaccca acaggtagtg caaacgcagt
     5521 tagatagcgc caaaaaatta gatcaagccg atgcggataa taaggcattg gttcaaacac
     5581 ttgaagatac gcttgctttc ttagcccaaa ttgataaaca aaaagcagat aatcaggcat
     5641 tgaataaatc tattcaagat tcccaaaaag cattaaaaac aagccaacat aatcttgaaa
     5701 aattaaaaga ggtgactatt gcaagtgtcg ataatttaac acaaaaagcg acaacagatt
     5761 tacaaaaaga gttaacctct acacaatctc agctggaaac agtacaacac gatttaagta
     5821 ttattaataa taatttagtt gcacaaaata ccgcaccgga taaggctcaa acggccttaa
     5881 ccgagatggt taaacgtaaa caggaaatta gtagccaact ttcagcgact aacattaaaa
     5941 atgaactaca gacaaagtta gaagtagaat tagaattaat agaattaaaa aacacttaca
     6001 atcaaatatt acttggtggc agcgaggatt tatctgcgct ttactctgct caattagatg
     6061 aaaaaaagca agagcagcaa aatctacaag cagaaattgc aaacctgcag actgctatca
     6121 acaataaaat tgtagaagag tctcagaaca agctagatca agcacaagcg gttcaaaatc
     6181 agcaaaataa tgcaacgacg aacccagtta tcttgcgtga attggatata aataccaaag
     6241 tcacacaaga gttgctaaaa cagaccaaag atatgacgca gttatcacaa gataatttgc
     6301 gaatcaaaag tgtgctagat aacttacagc aaacccaacg taatattgaa gaacaaatca
     6361 gttctctgca aggtacgttg gtgctttctc gtattattaa taagcaaaaa caatcattac
     6421 cacaagatga aatgatttcc ggactatcaa aacaaattgc agatttacgt gtacgtgttt
     6481 ttgatatcac tgaatttaaa gactcttttg cggacataaa tgcttatatc agccgcatag
     6541 agcaagatga aaaaacaacc tttacgagta aagagaaaga acaactgagt aaaattttac
     6601 aggaacgttc tgacacttta actgagatga ttaaatcatt aaataatcag ctcaatttat
     6661 taatcaatat tgaactaaac cagcaacaag tgcagaccat tagtgatgcg ttacagcaaa
     6721 aactgcaaca gcaaagcttc tgggttaaaa gtaacaaccc cattgatctt gaatggttta
     6781 gtaaatttgt cgatattacc cactatcaat ttattgatat tggaaaaaaa ctcaattttt
     6841 caaattggcg ggataattta ttacctgcaa gtattttagt cggaatttta
//
LOCUS       DANLXK010000125         6871 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.126, whole genome shotgun sequence.
ACCESSION   DANLXK010000125 DANLXK010000000
VERSION     DANLXK010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6871
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(185..2533)
                     /locus_tag="PXD88_002184"
     CDS             complement(185..2533)
                     /locus_tag="PXD88_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6281720.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            2718..4163
                     /locus_tag="PXD88_002185"
     CDS             2718..4163
                     /locus_tag="PXD88_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281721.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRENGDSYAEYGVFTQSGK
                     EAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNESKLNG
                     KIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQLEEAV
                     GVVELENEAETFSENEVIKYNAVFGVSKAAK"
     gene            4227..5639
                     /locus_tag="PXD88_002186"
     CDS             4227..5639
                     /locus_tag="PXD88_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6281722.1"
                     /translation="MKKIALLALFPMMLFARDPNTTQAYIEHTAQPTTTPQRVKIEKS
                     VPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYRDFTHIDPVLLRYAQGKIA
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(5889..6212)
                     /locus_tag="PXD88_002187"
     CDS             complement(5889..6212)
                     /locus_tag="PXD88_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL6281723.1"
                     /translation="MQKAYQIYTHSEREKVTEAKLELGKVETRLRNEGKTKEEIAQHP
                     EYLQLKRDLNDKQQTFDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLN
                     EQIKK"
     gene            complement(6181..6708)
                     /locus_tag="PXD88_002188"
     CDS             complement(6181..6708)
                     /locus_tag="PXD88_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL6281724.1"
                     /translation="MRDKNKERQQTLERYQELYDQDPELRVIAANSEGDLDLLQETFF
                     VKGELTITDSTPKEKWNWLHMCNLNSYSPSPLSVVEFYIKHGVDVNAQDCYGMTPLHY
                     AMRAKNVDAAIALLNAGADPNIENKDQVIPLSMIGAVPKEIELIEHDISEVKETQELV
                     KGIGEIAEGLSDLHA"
     gene            complement(6710..>6871)
                     /locus_tag="PXD88_002189"
     CDS             complement(6710..>6871)
                     /locus_tag="PXD88_002189"
                     /inference="COORDINATES: protein motif:HMM:NF025767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281725.1"
                     /translation="WSQKQFNDYVNARPENFRLENISENRSHKNEMPGKDNIKSIIDD
                     MKKFQQIGK"
BASE COUNT         2067 a         1524 c         1296 g         1984 t
ORIGIN      
        1 agttaattgt cttatttaac aacaaacagg aaattttggt aagctccgaa aataacaaga
       61 aaggaaaaac agcactattt tatccaaatt accaatacct gagttttaaa caagcggtta
      121 tttttagccg tttttttgca aaatttgaag aaaaaataac cgcttgtctt gttatgtcga
      181 gaacttaaaa tttcatctcc attcccaaca taaaatttcg tcccatttgt ggtacaaatt
      241 ggtgatacga agtgtggata tacaccggct gattcagtaa gtttgtgccg tttagactga
      301 ttttgtaatc cagctctttc cacttattgc tatacgacaa cccgacattc aacatcgtat
      361 taccttcggt aatatattcc aactggctcg tacggcgttg ggtaaaggtg cggatcagct
      421 ctaaatcccc cgaccaattt ggggtaaatt ccgcattaaa gcgaaaacct aaacgcattg
      481 gcggtgtacg aggggtgttt tggtcagccc gatatagaag ataatctttc cctttttcca
      541 cattttccgg cagataatct ttgaacacac tataatcgct atttatcttc aatggtggta
      601 aatttgttag ccagcctcgt accatatcgc cgaaaatcgt ggcttggtat tggtcgttaa
      661 agcggtagct tgcctctgct tctaccccgt aaaaacgggc ttttgcctga ttataacggc
      721 gcataaatag ctgattttca cggaaaagat tttcattgta gatgtagttt ttaaagtgat
      781 tgtaataaac actcacttta tagccaatac gttcagcttg atagcccaag cccaactcca
      841 cattatttga ctgctctttt ttcaagtctt tattgccgta ttcaaacgaa ttagtagcaa
      901 tatgctgccc gtgataatac agctccattg gcgttggcaa gcgttcattg tgcgaggcag
      961 taaacgaaag ctgatagtca gggtggaaga accagttaag cgtgccggaa taggcataag
     1021 ccgtttcatc atagggtgaa agatctggct caacctgttt gccgccactg atacggtagt
     1081 gttcttgtaa ccgtttgatt tcattgcgat catactcaat ctcaatcttc tgcttttcca
     1141 ttcgtccggc aagctcaaca gcaacgctat cccacatata ctgctcaacc ccaaacaggc
     1201 tgaactgttt attggtattt tcaaccagcg ggaatttcac ttcgcgatct ttcggcgcat
     1261 tcatactgct tttttgcgtt tgatactgaa caccccatac accggttaag ccacctagcg
     1321 gtgcgtgata gacctccaag cgggtatttt tgccccgatt tttgaaaata ttcaccggct
     1381 tgccgtaatc ctgatctttt ttcagctgtt tatggtaacg ggtggcaagc acgcctgcat
     1441 ctttttcatc gtggtaataa tcggcatcag catagcttgc cttaatttta tctacgccct
     1501 taaacggctg gcgtagctcg gctttcacat caatccgttt tgattctaaa tccacccacg
     1561 ggcctttgtg agtgtgatcg tgggcgtgtc cgaacgggtt atcgtggctg tgtgtgccgt
     1621 cctcggcgtg gttggttcca cagtggaagt gcggattgct cccaatattt tcctcaccaa
     1681 tcaaatgcgg atagagatag gtataagcgt atttatcccg cttattaccg tagatatgac
     1741 cggtacagaa atcaaattta tggttatgcc ccggcaagcc ataattatcc cgccgtttgc
     1801 tgtatgaggc accaatatag cctcgttcac cgacaaagga taagcccaac gtgccgactt
     1861 tggatttatt gtaagtgtcc ggcacatagt ttaagcgctc gcctaagttg atccccggca
     1921 cacggtagtt atcactatga cgactcagcc cttcgactcg caccgcaatg tggttaccga
     1981 tgccaaaggt tgcccctaat gcgccgactt tctctttggc ggcggtatca aaacggctat
     2041 tgagttcaac ctcatatccc ttttcaggaa tagcggtcgg aatacgttta tccaccacat
     2101 ttacaattcc taccggcgaa ctgctggcat aaagcaaggt gctggaacca cgcaagattt
     2161 cgacctgatc ggcaagcagt gaatcagcaa caacggcgtg atcaggagat aggttcgaca
     2221 tatcaatcac gtctgaaccg ttttgcaaaa tgcgaattct cgccccttcc tgcccacgaa
     2281 taatcggctt actcgctccg ccaccaaacg ggttactatg cacgcctaat tctgacgcca
     2341 acgcattacc cagcgttgcc gaacgctttt taaattcctt acctgcaata attttatcac
     2401 tgacttttag caaggtaact tcactcccct gcgatatact tggagtgctg ccaacgaccg
     2461 aaacttcatc taacaccgct acatcgttat tttccgccca aacaagcggg ctaaattgag
     2521 ccgaaatcag caatgccaat cctgttttct taaacacaat ctttctcctt aaaaaaatta
     2581 aggataataa ggtactgcaa aatatgagtc tttacaataa taaccataaa aaaattatat
     2641 tttttaaatt ttccctattg ccaaacagga aatatatcca ttaaaatttt atggatttaa
     2701 tctgacggag acaaaatatg cgttctacat tcaaacttac tcttgcagct ttagctgttt
     2761 ctattgtttt aagtggctgt aaatctagcc aaggtccatc tattgttgca gacagccctc
     2821 cacctaagga aataacagct actgatggca acgataaaga gaaaaccgat aacaaagaga
     2881 aaaagtctgc gcaaccaaat aaatccgatc ctcaaccgga taaacctgct aacgcaaaag
     2941 acccagtaaa acctgatgcg gagacaaata aaccaagtaa aaaagataaa gaatatacac
     3001 cacctgctac tgaaaaaatc gataactcat cagtacagcc ggataaaatg gtgcctaatc
     3061 ctatcgagaa taaggaaaac gacagtaata aacctaaccc caaagaaagc gatagcgata
     3121 ataatgacaa agtcactgaa ggcaataaac caaatgcccc aacagaaaca gtaaataaag
     3181 ataaagaagc tgagaaaagt aaaaaggaga ataaagagga ctcaagcaat aatactccta
     3241 acattaattt tgacggggca aagcctatag atacagatag taaaggtagc ccgtaccgag
     3301 taataaacct aaatccgaga aaaagcgtag taaatgcaag tgctatgcaa aaagtagatt
     3361 tcgactcttt tacggatgaa tctgttgaaa attcaccatt tgtcagtagc gatactgaaa
     3421 aagaatacaa taatacactt gtttttgggc ttggtgccgg agataaagat tcttatttta
     3481 agaacttaaa tcaaaaaggg gataaacatt taggtattca tagtggcgtg tatgaagatg
     3541 cgaatttaga aggtaatact aaaaaaatta actatctcta tgtaaatcaa ccttattcga
     3601 gctatggtgc tttatttacg gaccaaaaag acagccattt attcaacgtt cgtctgaccg
     3661 ctggtagaga aaatggagat agttatgccg aatatggtgt attcacacaa tcaggaaaag
     3721 aagctaaatg gaatgataac ctgattggtg atgccactta caaaggtcaa gctattgctc
     3781 gcgttattcg tcaggtaaat ggggaacaag tcgcaggtat tcctcaattt gatggtgatg
     3841 ttacattaaa tttacacctt tccaaagaat ggaatgaaag taaactaaac ggcaaaattg
     3901 atagccaaag tgttggggta attacactta aagaaagtga aatagctaac cctaccgcac
     3961 tccgctcaaa tattggtttt ggagaagaag tcatagttga gaataaagag aatcttgtgg
     4021 gtgattacgc tgtcgatttt accgggcctc agcttgaaga ggcggtaggc gttgttgaat
     4081 tagaaaacga agccgagaca ttctctgaaa atgaagtcat taaatacaat gcggtatttg
     4141 gcgtaagcaa agcggcgaaa tagtattttt tgtatcttac aaagggctgt taagcccttt
     4201 tatttttatt attttaagga taaaaaatga aaaaaattgc cttactggca cttttcccaa
     4261 tgatgttatt tgcccgagat cctaatacta cacaggctta tattgagcat actgcacagc
     4321 caactacaac cccccaaagg gtcaagatcg aaaaatcagt gcctattttt aacgaaactg
     4381 aattacgtgc taatcaatta ttgaccgaaa agctacttat ccaagctatt tatagtcgta
     4441 ggcttgctaa catggaaaaa ttaactgcga tttatcggga ttttacccac attgacccgg
     4501 ttttactgcg ttatgcacaa ggtaaaattg ccctactgaa aggcgattac gcacaggcaa
     4561 ttcagcactt ccaaaccatt cttgccaaac aacccaaact aaacactgta agaattgagc
     4621 tggcgattgc tctattgtac gatcagcaac ttaatcaagc ccaagcacaa tttgaaaaag
     4681 ccaaaagtgc cgaacatcta ccgcctaaag ttcacgcatt aattgagcaa tatcagcaac
     4741 atctggcaaa aaaacaggaa tggaaattta gtttttcagc caattatgtg cgagacggca
     4801 acattaaccg aacctcgaaa cagccgaaca ttgagcaaac cggctatgta aaacaaccta
     4861 atttgttgcc ccaaaccgca catggtgttc actatgcgtt tggattacag agagatttca
     4921 acctgttcga ctcacactat gtgagttttg acaaccaaac ccaaggtgaa ctttattggg
     4981 ataaccacga ttatgatgaa attaccaatc gcaccttgtt tggatacgct tacaaaaaat
     5041 ccgaccaaac cacccgcttg ttaccgtttt atgaaaaacg ctggaaacat caccgttcgg
     5101 aacgctggac aaacggaatt cgacttgaac acgcacaatg gttttcaccg cattggcaac
     5161 tcgccaccgc attggaatac ggcaaaaaac gttattttga tttgccgatt tataacggca
     5221 gctacaaact tgcctctgcc acattgcttt ggttacgcaa tccacaacaa tttttctttg
     5281 tcggcactga tttcaatcaa gacaaaactc agttaaaaca atatagctct gatactaaag
     5341 gcatacgctt tggctggcaa cgagaatggc aagccctcga gctttccagt cgcctcacgc
     5401 ttggctatac tgacagacgt tacaaagaca ccgctatatt gggaggaaaa cttaatcttg
     5461 gcagaatccg ccatgaccgt gtgcaaagtg ctaacctcac gctttggaaa cgagattggc
     5521 actggctcgg cctgatgccg aagctgcaat ttagttacgc caaacaccgt agcaacctgc
     5581 cgagcctcta tgcctacacc gataaaaaca tcaatttaat tattgaaagt cggttctagc
     5641 tccataaaaa caacaagcgg ttaaaattcc tagaaatttt gcaaattgca aaaaatgtag
     5701 aaaatttaac cgcttgtatc tatactgcag cttcttttcc ttcagtataa attaatatac
     5761 accgttgcaa caataatggc tgctccctgt catcaccttg aactgaaaat tgctcaaggt
     5821 ggatatgact atcgcagccg cttccaccgc acccagtaat gtatgggcaa gcaggttggc
     5881 ttgggtatct actttttaat ttgttcgttg agatatggcg aagctaagcc tactgctgct
     5941 tgtcctgaat ctttcgccgc taaaccttgt aaggctgccg tcaccgcatc caccgcacgc
     6001 ttggttttgc tgcccgtgcc gtaggcgtta tcaaaagtct gctgtttatc gtttaaatcc
     6061 cgttttaatt ggagatattc aggatgttga gcgatttctt cttttgtttt tccctcattt
     6121 ctcaaacggg tttccacttt gcccaattcc agcttcgctt ccgtcacttt ttcacgctca
     6181 ctatgcgtgt aaatctgata agccttctgc aatctcgcct atgcccttca ccagctcctg
     6241 tgtttctttc acctcactaa tatcgtgttc tattaactct atctctttag gaactgctcc
     6301 aatcatagac aatggaataa cttgatcttt attttcaata ttcggatctg cccccgcatt
     6361 taataatgct atcgctgcat caacattctt tgccctcatt gcataatgta aaggggtcat
     6421 tccgtagcaa tcttgggcat taacatctac cccatgttta atgtaaaatt cgactacaga
     6481 aagaggagat ggtgaataac tatttaagtt acacatatgt agccagttcc atttttcttt
     6541 tggtgtgcta tccgtaatag tcagttcacc ttttacgaaa aatgtttctt gtaaaagatc
     6601 gagatcgcct tctgagtttg ctgcaataac tcttaattca ggatcttgat catataattc
     6661 ttgataacgt tctaatgtct gctgacgttc tttattctta tctctcattt tactttccta
     6721 tttgttggaa ttttttcatg tcatcgatta ttgatttaat attatctttc cccggcatct
     6781 cattcttatg actccgattt tcagatatat tttctaatct gaaattctcc ggtctcgcat
     6841 taacataatc attaaattgt ttttgactcc a
//
LOCUS       DANLXK010000126         6833 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.127, whole genome shotgun sequence.
ACCESSION   DANLXK010000126 DANLXK010000000
VERSION     DANLXK010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6833
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1604
                     /gene="pckA"
                     /locus_tag="PXD88_002190"
     CDS             <1..1604
                     /gene="pckA"
                     /locus_tag="PXD88_002190"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL6281726.1"
                     /translation="NRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKGVL
                     TNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLKTL
                     VTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFKPD
                     FVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYFLP
                     LKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFNYE
                     GGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPIYH
                     IDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERGIT
                     EPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDTRG
                     IIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDLAG
                     RFVKNFEKYATNEEGKALIAAGPKL"
     gene            1697..2698
                     /gene="bioB"
                     /locus_tag="PXD88_002191"
     CDS             1697..2698
                     /gene="bioB"
                     /locus_tag="PXD88_002191"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL6281727.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            2858..2955
                     /gene="ffs"
                     /locus_tag="PXD88_002192"
     ncRNA           2858..2955
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXD88_002192"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            2990..3697
                     /gene="gloB"
                     /locus_tag="PXD88_002193"
     CDS             2990..3697
                     /gene="gloB"
                     /locus_tag="PXD88_002193"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL6281728.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            3856..4569
                     /gene="uppS"
                     /locus_tag="PXD88_002194"
     CDS             3856..4569
                     /gene="uppS"
                     /locus_tag="PXD88_002194"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL6281729.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            4593..5462
                     /locus_tag="PXD88_002195"
     CDS             4593..5462
                     /locus_tag="PXD88_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL6281730.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            5466..6776
                     /gene="rseP"
                     /locus_tag="PXD88_002196"
     CDS             5466..6776
                     /gene="rseP"
                     /locus_tag="PXD88_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL6281731.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
BASE COUNT         2070 a         1309 c         1433 g         2021 t
ORIGIN      
        1 taaatcgtat tgaacaagaa cttgcagact taggcattac aaatgtaaaa gaaatcgtgc
       61 gtaaccctag ctatgagcaa ctgtttgaag aagagatgaa atcggatctt aaaggttatg
      121 aaaaaggcgt cctaacaaat ttaggcgcag tagcggtaga taccggcatt ttcacggggc
      181 gttcgccgaa agataaatat atcgtattag atgaaacgac aaaagatacc gtctggtgga
      241 catctgatgc agctaaaaat gataataaac cgatgactca atctacttgg caaagtttaa
      301 aaaccttagt gaccgatgag ttatctaata agcgtttatt tattattgat gctttctgtg
      361 gtgcaagccc tgagcatcgc atcaatgtgc gtattattac ccaagttgcg tggcaagctc
      421 actttgtgaa aaatatgttt attcgtccaa cagaagaaga attaaaagat ttcaaaccgg
      481 attttgtggt aatgaacggt tcccaagtaa ctaacccgaa ctggaaagag caaggcttaa
      541 attcagaaaa ctttgtggca tttaatatca cagaaggtgt tcagatcatt ggcggtactt
      601 ggtacggtgg tgagatgaaa aaaggtatgt tctctatgat gaactacttc ttaccattaa
      661 aaggtgtcgc ttcaatgcac tgttcagcca atgtgggcga agaaggtgat gtggcggttt
      721 tctttggttt atcaggaacc ggtaaaacga cactatcaac cgatccgaaa cgcaaattga
      781 ttggtgacga tgaacacggt tgggacgaaa acggcgtatt taactatgaa ggtggttgct
      841 atgcgaaaac catcaacctt tctattgaaa acgagccgga tatttatcgt gcaatccgcc
      901 gtgatgcgtt attagaaaac gtggttgtgc gtgaagatgg cactattgat tttgatgata
      961 aatcaaaaac agaaaatacc cgtgtgagct atccgattta tcatattgat aatattgccg
     1021 tgccgtcaaa agcaggacac gctaaaaaag tgattttctt aacggcagat gcattcggcg
     1081 tattgccacc ggtgtctaaa ttaacgcctg aacaaactaa atactacttc ttatcaggct
     1141 ttaccgcaaa attagcaggt acagagcgtg gtattactga gccaacccca actttctctg
     1201 cttgtttcgg tgcggcgttc ttatcactcc acccgacaca atatgctgaa gtgttagtga
     1261 aacgtatgga agcagccggt gcggaagcct atttagtgaa taccggttgg aacggcacag
     1321 gtaaacgtat ttcgattaaa gatacacggg gtattattga tgccatctta gacggctcaa
     1381 ttgagaaagc ggaaatgagt acattaccaa tcttcaattt agcaattcca actgcgttac
     1441 cgggtgtaga aacccacatt ttagaccctc gtaacactta tgaagacaaa gcacaatggc
     1501 aagctaaagc agaagattta gctggcagat ttgtgaaaaa ctttgaaaaa tatgcgacca
     1561 acgaggaagg caaagcatta attgctgctg gtccgaagtt ataagttgta attataagtt
     1621 ataatcgcta aaaaattagt ttaggactaa accttgaatg aggtttagtc cttttgtata
     1681 aaggagaagt acaataatga caacattcca attaaggctg aaagccaaag atgagcttac
     1741 cccacaccca acagcacaat attggcgaaa atgccaagtg gaaggactat ttgatctgcc
     1801 gtttatggat ttagtgttta gagcggcaca agttcaccgt gaaaattttg atgctaatgc
     1861 gatccagctt tcaacgttac tctcaattaa aacaggaggc tgtccggaag attgcgaata
     1921 ttgcccccaa tctgcccgct atgatacggg aatagaaaag caaacaatgc ttgatgtaga
     1981 gacgattgta gaaaaagcta aaattgccaa agagcgtgga gcaagccgct tttgtatggg
     2041 ggctgcgtgg cgaggaccta ggcctaaaga tattaaagta gtctcagaaa tcatcaatgc
     2101 ggtgaaatca ttggggctag aaacctgtgg tactttcggt atgcttgaag agggaatggc
     2161 agaagaatta aagcaagcag ggctggatta ctacaaccat aatttagata ccgaccctga
     2221 acgctataac aaaattatcc atacccgaaa tcacgaagat cgaatggaca ctttaggtaa
     2281 agttcgcaat gccggcttga aagtttgctg tggcggtatt gtgggaatga acgaaacccg
     2341 ccccgagcga gcaggcctaa ttgcaagcct cgctaacctc gatcctcaac ctgaaagcgt
     2401 accgattaat cagttgatta aagtagaagg tacaccgctt accaatgccg aagatttaga
     2461 ctggacagaa tttgttcgta ccattgcggt agcaagaatt actatgcctc aaagctttgt
     2521 ccgactttct gctggcagaa ctactatgcc ggaggcaatg caagccctct gttttatggc
     2581 aggagcaaat tctattttct atggcgataa attacttact acagaaaatc cggaagaaga
     2641 tcatgatcgc caattaatgg ataaattaga tttatatccg ctacaatata tagcctgagt
     2701 gccaatgatt ttcgcctgaa tgaaaattaa agaatcaatc gttattttac gcaaatttct
     2761 aacataaaat aaccgcttgc aaaattcgtt cttgtcttat ttttaaattt atctataatg
     2821 tgaggcctta cgcaagcttg cgtaattcga tggggcgtta ttggttcctc gcaatggtgt
     2881 tcagcttact tgatcaggtt cggaagaaag cagtctgggt tgaaatttcc gtgtgccgag
     2941 ggaggctggt aatgccccac ccttttttca gttctatcag gagaacgtta tgctccagat
     3001 cacccccatt ccggcattaa aagataatta catttgggca atccgtaacg ggcaagatgt
     3061 gattattatt gatccatcag aacatcagcc agcattaaac tttattgcaa aaaatgcgtt
     3121 aaatttaacc gctatcttga ttacccataa tcaccacgac catactgatg gggtgagtgg
     3181 tattgttgag caatatccga atatccctgt ttatggtccg caagaagtgg ctgaatttgc
     3241 caatgtgatt gtctcgcctg aacaacatat cagcctgttt ggttatgatg taaggattat
     3301 tgaaagtggt gggcataccg cagggcatat cagttattta tttggctatg attatctgtt
     3361 ttgtggcgat gcgttattct ccggcggttg cgggcgggtt ttcaccggtg attaccaagc
     3421 ccaatttgat gcgttacaac gctttaaaaa tctgcctaac tcggttaaag cctacccggc
     3481 tcacgaatac accaagagca atttgaaatt tgcagaagcg gttctaccac caagctgtgt
     3541 attatcggaa tatcaagaac aggttgatct tttacgttcg caaaacaaac cgactttgcc
     3601 aaccactatt ggcttggaaa tgcaggtgaa cccgtttatg caagcggtcg atttagccga
     3661 atttattgca cttcgtcagc aaaaagacaa tttttaacct catatttcta attaagcatt
     3721 aaagcctctc actttaatgc tttttggtta aataaaacct ttgcaaacat cgcttgtcaa
     3781 ttccactctg gcttatccta tggtatagtt acgactattt ttagcttaat ttattatttt
     3841 agtgagtaaa attctgtgaa cttcgatcct caaaatatgc ctaagcacgt tgccattatt
     3901 atggatggca atggcagatg ggctaagcag aaaggaaaat tacgcatttt tggtcatcag
     3961 aatggtgtaa aggcagttcg ttctgcagtt agttttgcag caaagcatca tatccaagtt
     4021 ttaaccctct acgcatttag cagtgagaat tggagcagac cagaaactga agtttcagct
     4081 ttaatgtctc tgtttatgaa agctttagat tctgaagtta aacaattaca taaaaataat
     4141 attcgcttaa agattatagg cgataaatcc gcctttagcg aaaatttaca aaaacgcatt
     4201 gccgaatcgg aaaaattaac cgaaaacaat actgggctaa tcttaaacat tgctgccaac
     4261 tatggtggtt actgggatat tgttcaagct gctcaacaac tagcagtgca cgttaaatct
     4321 gaacaacttg ctgtggagca gattacacca gcattgtttc aacaacattt agtgacagaa
     4381 aaccagccgc aagtggattt attaattcga accagtggtg agcagcggat cagcaatttt
     4441 ctattatggc aaattgctta tgccgagctg ttttttagcc cggttttatg gcctgatttt
     4501 aatgatgagg cttttagtga tgcaatttat gcttatcagc aacgtgaacg ccgattcggt
     4561 ggttgttaat ataaaaagaa taaggaaata caatgcttaa agaacgtgta ctttcagcga
     4621 ttattatgat tattgccgtg ctggctgcca tattttggct ctcaccactt cctttaactt
     4681 tagtgttatc ggcaattgtt gtggctgcaa tgtgggaatg ggctcaattt gccggcttta
     4741 aacaccctgt gccacgtgca attgtggcaa tggtgacaat ctgcttatta ctttttgcga
     4801 tcgttgcgaa tactgattat atccgagcca cccgttttat tactgatgag actaccccta
     4861 tcctctttat tggctgtatt tggtggttaa ttgcccttgt cctagtggca acttacccca
     4921 actcggcaaa actgtgggaa aaatctgttg cagctaaatt cctatttgga cttgctacct
     4981 tagtgccgtt tttaattggc acgctcgcat tgcgtttcca taattatgca tttgatccat
     5041 accaaggaac ttatttattc ctttacgtct gtttattagt ttggggagct gattcaggtg
     5101 cttattttgc tggcagagcc tttggcaaaa gaaaacttgc cccaaaagta tctccgggta
     5161 aatcgtggga aggcgtaatt ggtggcgtac tcacctctag tttgattgcc tttacctttt
     5221 tacaacttac accggcaaat gtattcggca aagcattagc cactacccca tttattttag
     5281 tttcggtcgg tatggttgct atttcagtct taggcgattt ggcagaaagt atgtttaaac
     5341 gccaagcagg cattaaagac agtagccagt taattcctgg gcatggaggt attttagatc
     5401 gtattgatag tttaaccgct gccgttccgt tttttgctac attcttcttt tttgtactat
     5461 agaatatgac gtccatcatt gcatttttta ttttaatttg cgtactggtt tttgtgcatg
     5521 aatacgggca cttttgggct gctcgcaaat gcggggtaaa ggtgatccgt ttttcgatcg
     5581 gatttggtaa agtcttattt aagaaaaaag ataaacaagg aaccgaattt gttttttcac
     5641 ttattcctct gggcggctat gtacaaatgt ggaatgatga aacggatatc aacgctccag
     5701 ctcaacaagc tcttaacaca aaatctgtat tgcaacgtgc atttattatt atagccggtc
     5761 ctgctgcaaa ttttattttt gcgattttgg catactgggt cgtttttatt gccggtattc
     5821 caactgttaa acctgttatt ggggaaattt taccaaacac tatcgcctcc caagcaagaa
     5881 ttcctaccga attggaaatt acaaaaatcg gtcatcaatc tatccaagat tgggaaagtg
     5941 catctttagc actagttggt tttgtgggca ataaaaatgt accgttagag ggaaatatca
     6001 acggcaactc aacacaaaaa tatgaactcg atttatctaa ctggagtatt gactcagcca
     6061 aagaaaaccc attaaccgca ttaggtattc gccccaaaag tgcaaaagtc accgctgaaa
     6121 ttaaacaagt tgtcgaaaat tctcctgcaa gccaagtggg tattcaagca ggtgatcgta
     6181 ttcttcaaat taaccagcag ccatttaatt ggttcaattt agttgaactg gtacaagcag
     6241 gtaaacctat tgaacttaaa attgaacaac gaggtcagat taaagacctt gtcgtccaac
     6301 cagaaaaaaa agacgaacgc tatattatcg gggtaatacc aagttatgag cctcttgcag
     6361 ataaatatcg taccgaatta aaatatgata ttcttaccgc attttataaa agtatcgaaa
     6421 aagtgtggtc tcttacccaa accatactcc aatttatcgg taatttaata agcggtgatt
     6481 tgtccattaa aaatttaggt gggccaattt caatggcaaa aggagccggt gcaacagctg
     6541 aaatcggctt agtttattac cttagtttta tggctctaat cagtgtcaat ttgggggtaa
     6601 tgaacttatt tccactttta cccttagatg gtgggcaact tgttttattg gctgttgaag
     6661 caattcgtgg aaaagcatta tcagaaaaaa tacaactcaa attccaacaa attggatttg
     6721 cattcgtgct gagtttaatg ttattcgcct ttgccaacga tataattcac ttttaacaag
     6781 cggttaaaaa aggtgacttt tttgcaaaaa gcaccctgac atcaaaatcc ata
//
LOCUS       DANLXK010000127         6541 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.128, whole genome shotgun sequence.
ACCESSION   DANLXK010000127 DANLXK010000000
VERSION     DANLXK010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6541
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            89..2746
                     /gene="aceE"
                     /locus_tag="PXD88_002197"
     CDS             89..2746
                     /gene="aceE"
                     /locus_tag="PXD88_002197"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL6281732.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
     gene            2950..4860
                     /gene="aceF"
                     /locus_tag="PXD88_002198"
     CDS             2950..4860
                     /gene="aceF"
                     /locus_tag="PXD88_002198"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL6281733.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            5060..6484
                     /gene="lpdA"
                     /locus_tag="PXD88_002199"
     CDS             5060..6484
                     /gene="lpdA"
                     /locus_tag="PXD88_002199"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL6281734.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKR"
BASE COUNT         2001 a         1234 c         1513 g         1793 t
ORIGIN      
        1 gaattggtct aaaaatcacc aaacaaacaa aatttgttaa aattttgtta tttatcacct
       61 caatcgttaa tttataagga agaatactat gtcagagaac ttaagaaatg acgtagatcc
      121 aatcgaaact caggattggt tagcatcact cgattcatta attcgtgaag aaggtttaga
      181 gcgcgctcaa tttatcattg aacaagttat tagccaagct cgtgcaggtg gcgtggcatt
      241 accaacaggc gtaacaacag attatgtcaa tactatccct gtttccgagc agccagctta
      301 tccgggtgat cataaaatcg aacgtcgtat tcgttctgcg gtacgttgga atgcgattgc
      361 ggcagtactt cgtagccaga agaaagatct tgacttaggt ggtcatattt caactttcca
      421 atctgcggca actatgtatg aagtgtgttt taaccacttt ttcaaagcac caaccgaaaa
      481 agatggtggt gatttagtgt tcttccaagg ccacgcagca ccgggtatgt atggtcgtgc
      541 gttcttagaa ggtcgtatta ccgcagaaca aatggataac ttccgtcaag aagcatttac
      601 agacggttta tcttcttacc cacaccctaa attaatgcct gaattttggc aattctctac
      661 cgtatctatg ggtttaggac cggtaaatgc tatttaccaa gctcgtttct taaaatattt
      721 agaaaaccgt ggtctaaaag atacttcggc tcaaaaagta tatgcattct taggcgatgg
      781 cgaaatggat gaaatcgaat ctaaaggtgc attatcattc gccggtcgtg aaaaattaaa
      841 taacttaatc ttcactatta gctgtaactt acaacgttta gacggtccgg ttaacggtaa
      901 cggcaaaatc gtgcaagaat tagaagcact ctttaccggt tgtggctggg aagtgattaa
      961 agtgttatgg ggtagtggtt gggataaact gcttgaaaaa gatacttcag gcaaacttaa
     1021 acagttaatg atggaagtgc ttgatggtga ctatttaacc ttcaaatcca aaaatggtgc
     1081 ttacgttcgt gaacacttct tcggtcgtta ccctgaaact gcagcattag ttgctgatat
     1141 gacagacgat gaaatttggg cattacgccg tggtgcacac gattctgaaa aactttatgc
     1201 agcctatgca aaagcacaaa aatcggacaa accagttgta attttagctc accaagtgaa
     1261 aggctaccgt attcctgaag cggaaagtaa aaatactgct caccaatcga aaaaaatgtc
     1321 attagacagc ttaaaaggct tccgtgacta cttcgagcta ccattaaccg atgagcaagt
     1381 agaaagccta gagtatgtaa gattccctga aggttctgaa gagtacaact acttacacgg
     1441 acaacgtaaa gccttaaacg gttatgtgcc tgtacgtaaa ccgaaattta cggttgattt
     1501 caaagtgcct gaattaagcg aattccaagc attattggat gagcaaccac gtggtatttc
     1561 aaccacaatg gcgttctctc gtgtattgaa tactttattg aaagataaaa atatcggtca
     1621 gcaaatcgta cctattattg cggacgaagc ccgtactttc ggtatggaag gtttattccg
     1681 tcaaatcggt atttataacc cacatggtca aaactatgta ccgtcagacc gtgatttagt
     1741 agcttactac cgtgaagcaa aagatggcca agtgttacaa gaaggtatca atgagttagg
     1801 tgcaacagcc tcttgggtgg cagcagcgac ttcttattct gttagcaact taccgatgat
     1861 cccattcttc atctactact caatgtttgg tttccaacgt gtaggcgata tgatgtggtt
     1921 agccggtgac caattagctc gtggctttat gattggtggt acttcaggtc gtacaacatt
     1981 aaacggtgaa ggtttacaac acgaagatgg tcatagccat attcaagcag gtgtaatccc
     2041 gaactgcgtc acttatgacc ctgcatttgc ctttgaggtt gcggttattg ttcaagacgg
     2101 tattcgtcgt atgtatggtg aaaaccaaga agatatcttc tactacatta ctaccttaaa
     2161 tgaaattacc gaacagccgg caatgccggc aggtgcggaa gaaggtatcc gtaaaggttt
     2221 atataaattt gaaaccgttg agggtaaagg taaaggtcac gtacaattat taagctcagg
     2281 tgcaattatg cgtcacgtgc gtgcagctgc acaaattctc gcgaatgact acggcattac
     2341 agcagatgta ttctcagcac catcattcaa tgaattaggt cgtgatggag cagatgtggc
     2401 tcgttggaac ttattacacc caactgaaac accacgtgta ccgtacgttg ctcaagtgtt
     2461 acaagattta ccgactgttg cttcaaccga ctatatgaaa atgtacgcag agcaaatccg
     2521 tgcttatgta ccaagtaaac actatcacgt gttaggtaca gacggtttcg gtcgttcaga
     2581 cagccgtgca aacttacgtg aacacttcga agttgatgag cgttatgtag tagttgcagc
     2641 cctcgctcaa ttagcgaaag aaggtacagt tgaaaacaaa gtggttgcgg aagctattac
     2701 taaattcggc ttaaatgtag atcgtattaa cccattatat gcgtaatttc taatactctc
     2761 tcccttgatg ggagagagac agctaaaggt ttcgtttaga aacttttagc agagagggta
     2821 ttagttttat ttgcaaaaat gttgagaaaa tcaaccgctt gcattccctt ctccctgatt
     2881 tttcttctta caaagaaaaa tctgtccctc ccacaatggg agagggggta actcaagaag
     2941 gatttcaaaa tgtcaaaaca aattaatgtg ccggacatcg gttcggatga agtcagtgtg
     3001 actgaagtga tggtaaaagt tggtgatact atttcagtag atcaatcaat tattaacgta
     3061 gaaggcgata aagcctctat ggaagtgccg gctcctgaag caggtgtggt aaaagaagtt
     3121 ttagtgaaag tgggtgataa agtttcaacc ggttcaccaa tgttaatttt agagtcagca
     3181 gatgctgctc ctgctcaaga agcaccaaaa gcagaagcag ctcctgctgc tccagtagca
     3241 acaacttcag ccgttgttga agtaaatgta cctgatatcg gtggcgatga agttaacgta
     3301 accgaaatta tggttaaagt aggtgatagc gttgaagtgg atcaatctat catcaacgtt
     3361 gaaggtgata aagcctcaat ggaagtgcct gcaccggttg ccggcgtagt aaaagaaatc
     3421 ttaatcaatg tgggtgacaa agtttcaact ggtaaattga ttatgaaatt tgaaacggct
     3481 tccgcagcta cagcacaatc tacaccggtt gcggaagctg ctccagctca agcttcggca
     3541 tcagcgatta aagatgtaaa tgtaccggac atcggtggtg atgaagtaaa cgtaactgaa
     3601 attatggtta aagtgggtga ttctgtttca gaagaacaat ctttaatcac ggttgaaggt
     3661 gataaagctt caatggaagt tccggctcca tttgccggtg tggtgaaaga aattttagtg
     3721 aaatcaggtg ataaagtttc aaccggttca ttaattatga aatttgaagt agcgggtgcg
     3781 gcaccggctc cggcggctgc tcaagcggct tcagctcctg ctcctgctcc acaagcagca
     3841 gctccggcga aagctgacgc agctccggca ggtcaaaacc aatcaggttt aagccaagaa
     3901 caagtggtgg cttcagctgg ctatgcacac gcaacaccgg taattcgccg tttagctcgt
     3961 gagtttggtg taaacctaga caaagtaaaa ggtacaggtc gtaaaggccg tatcgttaaa
     4021 gaagatattc aagcatacgt taaaacggct gttcaagtat ttgaaaaaca aggcggaaca
     4081 gcagcggcag caacaggtgc ggcaaacggt gcaggcttag gtttattacc gtggccgaaa
     4141 gtagatttca gcaagtttgg tgaagttgaa gaagttgaat taagccgtat caataagatt
     4201 tccggtgcga acttacaccg taactgggta atgattcctc acgttacaca tttcgatcgc
     4261 acagacatta ccgagttaga aaacttccgt aaagagcaaa ataaagaagc ggaaaaacgt
     4321 aaattagacg tgaaaattac ccctgtggtc ttcattatga aagcagtggc aagtgcatta
     4381 gaagccttcc ctcgtttcaa cagctcaatt tctgaagatg cacaacgttt aaccttgaaa
     4441 aaatacatca atatcggggt tgcggttgat acgccaaacg gtttagtggt gccggtgttc
     4501 aaaaatgtga acaaaaaagg cattatcgaa ctttctcgcg aattaatgga agtctcgaaa
     4561 aaagcccgtg aaggtaaatt gacagcatct gatatgcaag gtggctgttt cacaatttca
     4621 agtttaggcg gtattggtac aacgcacttt acgccaatcg tgaatgcacc ggaagtggct
     4681 attttaggtg tgtctaaatc tgaaatgcaa ccgatttgga atggcaaaga gtttgaacca
     4741 cgcttaatgc ttccgctttc attatcattc gaccaccgtg tgatcgatgg tgctgatggt
     4801 gcgagattct taagctatat taatagcgtg ttggcagata ttcgtcgttt agtgatgtaa
     4861 ttcggtaaag ctcctcctaa aaaagtccct ctttagaaaa gaggggtagg gggagatttg
     4921 atagacgtaa tttacgaaga gaataaatta tttggtagaa atttgtgttt gattgattgc
     4981 tctctcactt cgctttatat tctgccaaat ctcccttacc cctctttgct aaaggggggg
     5041 aataaaaaga ggaaaaacta tgagcaaaga aattaaaacc caagttgtcg tacttggtgc
     5101 aggtccagca ggttactcag cggcattccg ttgtgccgac ttaggcttag aaacagtaat
     5161 tgttgagcgt tattcaacct taggtggtat ttgcttaaac gtaggttgta tcccttctaa
     5221 agcattatta cacgttgcaa aagtaattga agaagctaaa aatgcagtac acaacggtgt
     5281 gacctttggt gagccaacga ttgatttaga tcaggtacgt gctggtaaag aagccgttgt
     5341 ttcaaaatta accggtggct tagcaggaat ggctaaggct cgtaaagtga cagtagtaga
     5401 aggcttggct gcatttactg gtccgaatac gttagtcgct cgtgatcgtg acggcaatcc
     5461 tacaactatc acgttcgata atgcgattat cgcagcaggt tctcgtccga ttcaactacc
     5521 atttattcca cacgaagacc cacgagtttg ggattcaacc gatgctctta aattaaaaga
     5581 agtaccgaaa aaactcctta ttatgggtgg tggtattatc ggtttagaaa tgggaacggt
     5641 atataacgcg cttggttcag aagtggaagt ggttgaaatg ttcgaccaag taattcctgc
     5701 tgcagataaa gatgttgtag cgatttacac caaacaaatc gagaaaaaat tcaagctaat
     5761 gcttgaaacc aaagtaaccg cagtagaagc taaagatgac ggtatctatg tatcaatgga
     5821 aggtaaggct tgcaacgata ctaaacgtta tgatgcggta ttagtcgcta tcggacgtgt
     5881 gccaaacggt aaattaattg atgccggtaa agctggagtg gaagtagatg agcgtggctt
     5941 tattcgtgta gataaacaaa tgcgtaccaa tgtgccacac atctttgcta ttggtgatat
     6001 tgtcggccag ccgatgttag ctcacaaagg tgtacacgag ggacacgtgg cagcagaagt
     6061 gattgcagga atgaaacatt acttcgatcc gaaagtcatt ccgtccatcg cttatactga
     6121 accagaagtg gcttgggttg gtaaaactga gaaagagtgt aaacaagaag gcttgaacta
     6181 cgaagtggcg aaattccctt gggctgcttc aggtcgtgcg attgcttctg aatgctcaga
     6241 aggtatgacc aagttaattt ttgataaaga tactcaccgt gtattaggtg gtgcgattgt
     6301 tggtagcaat ggtggcgaat tattaggcga aatcggtctt gcaatcgaaa tgggctgtga
     6361 tgctgaagat atcgcattaa ccattcatgc tcacccaacg ttacacgaat cggtaggatt
     6421 agcggcagaa gtatttgaag gttcaattac agacttacca aatgcgaaag ccaaaaagcg
     6481 ttaatcagat tatttaatct ctaaaaaata agcggttgta ttttgtaaat tttttgcaaa
     6541 a
//
LOCUS       DANLXK010000128         6474 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.129, whole genome shotgun sequence.
ACCESSION   DANLXK010000128 DANLXK010000000
VERSION     DANLXK010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6474
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..707)
                     /locus_tag="PXD88_002200"
     CDS             complement(<1..707)
                     /locus_tag="PXD88_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6281735.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAI"
     gene            complement(611..934)
                     /locus_tag="PXD88_002201"
     CDS             complement(611..934)
                     /locus_tag="PXD88_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281736.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1015..1182)
                     /locus_tag="PXD88_002202"
     CDS             complement(1015..1182)
                     /locus_tag="PXD88_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL6281737.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
     gene            complement(1190..1564)
                     /locus_tag="PXD88_002203"
     CDS             complement(1190..1564)
                     /locus_tag="PXD88_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281738.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEECQIRCPKTYAKL
                     REILEANEENVVRIGNLSISIG"
     gene            1714..1941
                     /locus_tag="PXD88_002204"
                     /pseudo
     CDS             1714..1941
                     /locus_tag="PXD88_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            1966..2361
                     /locus_tag="PXD88_002205"
     CDS             1966..2361
                     /locus_tag="PXD88_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281739.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GISLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            2393..3034
                     /locus_tag="PXD88_002206"
     CDS             2393..3034
                     /locus_tag="PXD88_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281740.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            3117..3518
                     /locus_tag="PXD88_002207"
     CDS             3117..3518
                     /locus_tag="PXD88_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281741.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            3563..3793
                     /locus_tag="PXD88_002208"
     CDS             3563..3793
                     /locus_tag="PXD88_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL6281742.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            3861..4127
                     /locus_tag="PXD88_002209"
     CDS             3861..4127
                     /locus_tag="PXD88_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL6281743.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            4131..4400
                     /locus_tag="PXD88_002210"
     CDS             4131..4400
                     /locus_tag="PXD88_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL6281744.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            4475..4738
                     /locus_tag="PXD88_002211"
     CDS             4475..4738
                     /locus_tag="PXD88_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281745.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            4798..5508
                     /locus_tag="PXD88_002212"
     CDS             4798..5508
                     /locus_tag="PXD88_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL6281746.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            5486..5776
                     /locus_tag="PXD88_002213"
                     /pseudo
     CDS             5486..5776
                     /locus_tag="PXD88_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            5766..>6474
                     /locus_tag="PXD88_002214"
     CDS             5766..>6474
                     /locus_tag="PXD88_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL6281747.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSVRFSIDKKIK"
BASE COUNT         2061 a         1276 c         1250 g         1887 t
ORIGIN      
        1 ttaattgcct cttgattcag taatagcgat cgtgccttac ctgatttagc gacatcatta
       61 gtcacgattg ctacctttct tacaagatct atcttatccc aagtcattgt caaaatttct
      121 gtccgtctgg ctccagtcat caaagcaaac ttacagatag atttcatcca gtctgaactt
      181 aatttatcta ttagctgttt tgcttgttct ttggtgatcc agcgtacacg aattggcggc
      241 tctttctttt tcggtatgtg tgggactgca tccaacatac caagtttatg agcgatattt
      301 aatactctcg ataaagattt cacatactta ttttgcgtac tatgagatag aggctttttc
      361 gtatttgcat tctttttcgg gatatttagg ataatctcct gagctgttaa agagctgagt
      421 tcacgaccgg caaatttgga taaccagtat tcagcatgtc gcttttttgt ggctttatct
      481 tttaattctt cggccgcacg aacgtaatgg agcaaagcat cttcaaagat atattttctc
      541 ttttcctcga gtttatcctc tgcccacatt tcttgcttga gtttatcgtg atactgctga
      601 gcttcacgtt ttacaagcgt gcgagtgctt ctcttaattc tcttgccgtt tggggttgtg
      661 atatcaaccc accacggacc gtttgctttt cgtctgtaga tcgacatttt tcattctcct
      721 cgaccgacag agataaccct cggtcattat cagatcgttt tcttattggg tcaataccgg
      781 ctctcttttt tgctctttcc aaatcttctc ggttgatccg ccaaacttcc gagcctacca
      841 ttttaaaaaa tccccaatcc gccaaatgtt ggcggactgt atttggatgg caatttaatt
      901 cttttgccac ttgattaata gtaagatgtt ccattcatta ctttctccaa aataaatccc
      961 tctaaacgag ggattgtact aaataatcgt taagtctttg ccttatccac tgcatcaagg
     1021 cacagccata ccgtttccat ttggcacatt ggggaaacgg tgagctaata ccgcacaggg
     1081 gaatggctca atttcagaga accacaaagg cttacctaaa ccgtgccacg ctatacttgt
     1141 agcttcgata ccgctacaaa ttgagccgta ggtgaattgc attttttacc tatcctatcg
     1201 aaatactcaa attcccaata cggacaacat tttcttcgtt ggcttctagg atttctctca
     1261 acttagcata ggttttgggg catcttattt gacattcctc ttcgttgtag agagcctcta
     1321 atgtgtgcca ttcttttgca agtgcagccc aaactttccc aagttcagcc attttttcaa
     1381 tcctatttcg caaaaaaggg actgtctcca acaacagaaa gcaacgcctg aaatccgata
     1441 catcgtgtgg gtagccttct atttttggtc ttattccgta accaaggtaa aaagccattg
     1501 ttttactgct tacccctgtc tctccattgg caagccacca agcgattttg tcttctatgt
     1561 gcatttttcc tccaaaaatt aaccgcttgc ggaacaagtt ctacaagcgg ttgtcaagtg
     1621 ttcatttgtt caatgaacag ttcattgtga ataacaaaac cgcttgaatt acaagcggtc
     1681 tattttgttg cgtaaattta ctgttagcgt tgagccataa ccgactacga ccgctggccc
     1741 gaagatattg acggcgaggg ggacggcttc tcgcttgcct ccaaacggac gaccactttt
     1801 atgtcagccg gaatgacttt agtggagagt tcgcctggta aagatattgt cgatctcaaa
     1861 catatcccga aaagtagcca cgaagcccca ccgactaccg gtattttaag cctctacaat
     1921 cgaggcgacc gcagacgctt tagcgaaaca gttgataggt aagctatgaa aatccatacc
     1981 caaatccgaa aagaaatcct ttcattatta gaggcaaaat taacggacat cgagcatttt
     2041 tataacgggc aaccgaattt cattgatatt gacgaacagc aacttgccat ctctgtttat
     2101 cttgatgaga ttaaccgtca ggagcttacc ttatgcgatg aacagtggac agctcaactt
     2161 aacatcacga tttatctaaa atcagttgat gaggcagaag atgaattaga tgagtgggcc
     2221 gaaaaaatcc gtgaagtggt tgaaacatat tctgcgtttg aacatttaga gggcatcagc
     2281 ctttctcaat atcaatacga acaagatcaa aatcaaagaa cttggcactc agccacattg
     2341 atttttgatg ttgaatacta acaagcaaat aatccttata ggagaatcta caatggcaaa
     2401 aacaacaaaa gtccaaggca caaaatttag aattggcatt ggacgtgaag cccaaaaggc
     2461 aattacggct atcactttag ctacagcaac gcttactatt gccacatcag gctataaaaa
     2521 aggcgatgca atcgaaatta ccggttgtgg tcagttagac ggcatttatc ctgtattatc
     2581 tgtaacaggc gatcaagtca aattgtgcga agaagtaaac tggacgggta aagatttacc
     2641 ggctaattac accaaagcca aagcagcttt agtacaatac tcagaccaat tctgtgcggt
     2701 aaaaaacatt gaaaaatctg atgatacgtt aagtaccgaa gatgttacaa cggtctgctc
     2761 ggaaggtaca gaaaccgaac ccggagaaat tgaatttggc tcaattaaac tgagcttttt
     2821 tcacaagcca agtacggaaa tgcaaactcg cttacgcaaa ttgttttatg acaaatccac
     2881 ctttgcgtac aaattagaat tacctgataa ccacggcaca acctatggcg aaggtttcat
     2941 tgaggcgggt aacggcttta gtggcgaagt taaaggcaaa tatgaaggct cggtatcaat
     3001 taaaccaagc aaacgtgatt atttgctagt gtaattacaa aatattgctc caaatcgacc
     3061 gcttgtaata ttgcaagcgg tcttttttat cctaaatttt acaaaaggaa tcgacaatga
     3121 cactccgtga aaaactcctc gccaacaaac caaaattaca atctatcgaa atcaacggtg
     3181 agacctacta cctgcgtgaa gccactgttg gcgatatgaa taagcagatt tttgaaaccc
     3241 gaagctggct cattcaacaa gctgaacaag aaaatgttga attaccggca gaagatgatg
     3301 aaacctttga cgaagctctc aaccgttttg gcgaaaaata ccgccttgct caatcggttg
     3361 cctaccgttt atgtgacgaa aacggtgcat tactgtttaa cccacttaac attgacgatc
     3421 tcaatgcgat tgccgaatta gacagtaaag tgattatcga ctttaaccaa gccgtgtccg
     3481 ccccaaaaga ctcagcgagc gaagaaagtt ccaaataacc ctttcgctcg cactgggtaa
     3541 aacccttgaa gaaatcgaac aaatgcctga acgccacttt gccgaatatc agctttttta
     3601 tcaagagcaa ccttttgggc tttggcgtga ggactatcgt gctgctcaac ttgcccactt
     3661 aaccgcaatg atcaaccgtg acccaaaagg caaagcccct gaactctcgg aatttatgcc
     3721 gttttttaat cgggctgatg aagtagaagc aaatgaagat gatggcgttg cggattattt
     3781 ggcgaaaagg taaatctctt gtatttcatt gtaattctgt ctataattgg tgtaatacat
     3841 agaaatacag gagagataaa atggcgacta tcaatgatgc tttcagtttt agaacaaata
     3901 ccgaaataaa aaataccgca tttgatgtaa ttaaaaacta tggaatgaca ccctctcagg
     3961 tgtttaatat gtttttaacc gagattgcaa aaacgaaaac tattccgtta agtttgaatt
     4021 atcaacccaa tcttgaaaca aaattggcaa tgcaagaagc aaaatcaggt aaaaatgaag
     4081 tttatgcctc acttgaagca tttcataaag caatgttagc ggagtaaata atgctacaaa
     4141 tttcgccgac aaacgcatat aaaagagact ttaaaaagat tgcagccgaa ttagtcggta
     4201 gttcggaata tgtggaagta atgtattgcc taataaacca attaccattg gcggaaaaat
     4261 atagagatca cccactacaa ggtgaatggc aaggctttag agattgccat attaagcctg
     4321 atttagtgtt gatttacgct gttgaagata atctgctccg ccttgttcgt ttaggatcgc
     4381 acgctgaatt atttggataa tttctgtaaa aactaaccgc ttgcgatttt gtgctgtggg
     4441 cggtatagtt ggaatattaa caaaggaggg aaaaatgaaa aatgtacttc tatttatcgt
     4501 acactttttc ttaatcgcaa tgctctcaat tatcccaata ttaattattc ttggagcaat
     4561 cgaaagagat ccttactata ctgcgtggat tttccttagc gtatttttag gcattggagc
     4621 attgttatat tttgcaacca ttgtttctaa gttaattaac aagggaaaaa cacaaacatt
     4681 agaagaaaaa cgatatgcag aatattggaa taatgtaaaa gtcaatattc ccaaatagtc
     4741 taactgataa atgaccaaaa gctcgcttta tgcgggcttt tttattggag aaaaacaatg
     4801 agtggcttag gaaaattaac cgttacctta gagcttgaaa atgcaaaatt tcagtccgca
     4861 atgacgaaat ctgattatga ggcacaaaaa tttgccaaga actttatcca aaatatggat
     4921 agagctagaa atcacgccaa agaatttgcc gatcgctcaa cccaatattt aaaaaacatt
     4981 gagcaagcgg caaagaacct caataaaaat tctgaatttt catttttatc gactattggt
     5041 ggacattatc aatcaatgtc tagtggcata ttgagtgcgg caaaagccta tactgatatt
     5101 caaaataaaa tgaaattagt aagcggtagt tcagcagagg cagctaaacg attaactgat
     5161 gtgtttgata ttgcgactaa aacaagccaa agtacagagg ctgtttcagg tgtctatcaa
     5221 acatttgctc aaaatgccca atctctcgga ctggctcaaa aagatgtagc agaattaact
     5281 aaaacggtct ctcaagccgt tgctgcaagc ggcgcaagca gttctgcagc aagtaatgcc
     5341 ctaacccaat ttggtcaatc acttttaatg ggcaaaatga aagcccaaga atttaactcg
     5401 ctcattactc aaaccccaac cattattcaa gcaatggcaa aaggtttggg aatgacaatg
     5461 gcagaattta aagcagcggt ataccgggca aaatctttac ttggataaca ttcaagggca
     5521 aggttttgag agagtggata caccccaaat cggcgatgtg attttaatac aggtcggttc
     5581 tgatgtgccg aatcacgcag cgatttatat tggtgaacaa atggtaatcc accatagccc
     5641 gaaccgatta tctaagcgtg atttatatga cggttattgg ttacgccata cccacagtat
     5701 ttggcggcat aaactggcgg atagattgga ttttgacggc atatttaatg atataggaga
     5761 acaatatgaa atttagtaaa tatcaattat tagttaataa gatctgcttt atttgtggta
     5821 aaaaagattg tccacaaatg aaaaagagta aagactacaa agactttttg gatgctttag
     5881 aaaaagggga tgttgataaa gcagataaaa tatacaatac gaagttttca cagttttcta
     5941 aatcttttgg tcatgaaatg gaaaagaatt tagagaaaaa tcgtatacct cctatttatc
     6001 agggagttcc atttgattct tttgacttat atcagcatta ttcttatggt aatggagagg
     6061 cattaaatct ttcatccgtt ggattaagta ataaaattcg tcctctagtg aataaagata
     6121 aagcatttgg taaatccaat ggaagtatag aaagccgatt tatttcgcaa tataaaaatg
     6181 aaggacgcac atctttctcc aatgcttatg attttacaaa agaagcatcg ggtattgcag
     6241 atccgttatg ggcgttagga acagctacca ttagtggaga attgaaagat atacaaattt
     6301 ttcccggtgg tattgctagg ggaaatatcc attatagtat cagggacaga ttcactgacc
     6361 catttgatac attcaatttt actaaaggag aatggaaccc aaatggaaca ccttatatta
     6421 ttcaagatag ctggataaaa tcggtacgat tttcgataga caagaagata aaaa
//
LOCUS       DANLXK010000129         6345 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.130, whole genome shotgun sequence.
ACCESSION   DANLXK010000129 DANLXK010000000
VERSION     DANLXK010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6345
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            367..1899
                     /locus_tag="PXD88_002215"
     CDS             367..1899
                     /locus_tag="PXD88_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL6281748.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
     gene            2125..2877
                     /locus_tag="PXD88_002216"
     CDS             2125..2877
                     /locus_tag="PXD88_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL6281749.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
     gene            2889..4079
                     /gene="trpB"
                     /locus_tag="PXD88_002217"
     CDS             2889..4079
                     /gene="trpB"
                     /locus_tag="PXD88_002217"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL6281750.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            4081..4887
                     /gene="trpA"
                     /locus_tag="PXD88_002218"
     CDS             4081..4887
                     /gene="trpA"
                     /locus_tag="PXD88_002218"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL6281751.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            4937..6343
                     /locus_tag="PXD88_002219"
     CDS             4937..6343
                     /locus_tag="PXD88_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL6281752.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLLAKSFKFHINNFSLE
                     NSKGKVDLALLLNMAQFDPQNLGNMQAVLQALSTSKFTSNINRQYAEDIIRQVSIVTE
                     KLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVNLNGRELTED
                     ELQMALFMIVMGAGSLGQ"
BASE COUNT         1908 a         1091 c         1428 g         1918 t
ORIGIN      
        1 ttaggtaaat aagcataaat aaaaaaatag atactttata tctaaagata ttcgtgctat
       61 cttaaacact gtcctacaaa ttgtagaggt gcgaattcaa taagtatttc ttctgagtgg
      121 aaaacgatga aggggaagga aaggtgaatt tgccgaaatc aattaagcgt catcttaatt
      181 ggttggggtc gttgtcgaaa gaaacgacac tgtcgtagta aatgctacgg agtgctactg
      241 ttagggtggg tttcagatat ttcacatttg ccttcctttc atatttattt ttataaatat
      301 cccagtagat ctcttgtttg gctattctta tttatacaaa ttatacacag tcattttaga
      361 ggttttatga atctagttga ttattctacg tcactttggt cggtattgcc ggcactgatt
      421 gcgctaatat tggcaattgt gacacgcaag gtgattattt cacttagcat cggtattctc
      481 tttggtgcat ttatgcttac taatagcaat tttcttgatg cacttactta tattaaaaat
      541 agcgttgttt ctttagttta taaaggggct gaagaaggat taaattcaaa taatgttaac
      601 attattttat ttttgctttt attaggggta ttaacgtcat tattaagtat ttcaggtagt
      661 aatcaggcgt ttgcgaattg ggcgcagaaa aaggtaaaag gcaaacgagg cgcaaaatta
      721 atggcggcag gtttggtttt ctttaccttt attgatgact atttccacag tttagcagta
      781 ggtgcgattg cccgccctgt tacggataaa ttccgtgttt ctcgtgctaa attagcttat
      841 attttagatt ctaccgccgc tccaatgtgc gtgttaatgc caatttcaag ctggggggct
      901 tatattatta ccttaatagc tggcttattg gctacgcatt ccatcacagg ctattcgcca
      961 ctaggcgcat ttatgacaat gagcgcaatg aacttttacg ccatttttgc gatgattatg
     1021 gtgttctttg tggcatattt ctcatttgat attggttcga tggcgcgttt tgaacgtcaa
     1081 gcagcgcatt tagcagaatt agatgatgag caaattgaaa cgaaaggaca cgtgcgcgat
     1141 ttgattttgc caattattgc acttattgtt gctacagtct caatgatgat gaaaacaggt
     1201 gcagatgcac tggccgaatc aggtgcttca ttttctatac taggtgcttt tgaaaatact
     1261 acggtaggca tttcattagt tgttggtggt gtggcagggc ttatagttgc aactatttgt
     1321 atcattacaa gcggtaatat ttcttttaaa aattacgtcc gtgcttatgg cttaggtgtg
     1381 aagatgatgt ctggtgcaat cactattctc ttctttgcgt ggacaataaa cggcgtagta
     1441 agtgatatgc aaacagggaa atatctatca ggattggttg cagaaagcat tggagcagag
     1501 tttttacctg caattctatt tgtgttagcc gcagcaatgg cgttttcaac aggaactagc
     1561 tggggaacat ttggtattat gttgccaatt ggagcctcaa tggcagtgca ttcagatcca
     1621 gcattaatta ttccttgttt atctgcagta atggctggtg cggtttgtgg tgatcactgt
     1681 tctccagtat ctgataccac tattctttct tcaacaggcg cacaatgtaa tcatatggat
     1741 catgtcattt ctcaattacc ttatgcttta ttagttgcaa cagcttctat tattggttac
     1801 ttagtggttg gctttaccca atcagcggta ttgggattta ttgctacagc tgttgttatg
     1861 gcaatactca ttttgctttt taaagaaaaa aagcattaat ttccgaaaat gtgaagggaa
     1921 tcacagaatg agatttattg atgagataaa atagcactca agatatggat atcgaatgtt
     1981 gtgttatata aatcttaaaa taagatcctc ctagcattag cgtacctttt ggtacgcttt
     2041 tttcttttat ggcaatatta tttcttgcaa ttttaatttt tttgtactac tttaatagta
     2101 cattttaaat ttgagggtga aaagatgaaa atagcattag tcacaggagt aactgctgga
     2161 tttgggttgg caatttgtaa attattgctt caatcgggtt ataaagtaat tggcacgggc
     2221 agacgggcag agcgtttaga agaactgcat ttacaatttg gcgataaatt tctaccgctt
     2281 gcatttgata ttcaacagcc cgatgaggtg gaaaaagcac tgaatagccg ccctaaagcg
     2341 tggcaacaaa ttgatttatt agtaaacaat gcaggccttg cactcggctt agaaccggca
     2401 cagaaagcag atttgaacga ttggtatcaa atgatcgata ccaatattaa aggattggta
     2461 acgatgacac gcttagtttt gcctgaaatg gtggagcgga aaagtgggca tattattaat
     2521 atcggctcga ttgccggcac ttacccttac ccgggcggta atgtatatgg tggtactaaa
     2581 gccttcgtga aacagtttag cctaaatttg cgggcagatt tagccggcac taaagtgcgt
     2641 gtttccaatg ttgagccggg gctatgtggc ggtacggaat tttcaaatgt acgctttaaa
     2701 ggcgatgatg aaaaagcggc taaagtttat gaaaacgtgc agtttgtgcg cccggaagat
     2761 gtggcaaata ttgtgctttg gctgaatcag caacctgaac acgttaatat taatcgggtt
     2821 gaagtgatgc cggtggctca aacttcttct gccttaaatg tagcgagaaa tatttaaaag
     2881 gaaatattat gtcagacaca cttcttaatc cttattttgg tgaatttggt ggtatgtatg
     2941 tgccggaaat tttagtgccg gtgctaaaag aattagaaca agcctttgta gatgctcagc
     3001 aagacccaac attccaagct gaatttgccg atttactcaa aaactatgcc ggtcgcccga
     3061 ctgctttaac cctttgtcgt aatttaacca aaggcagtaa aaccaaactc tatttaaaac
     3121 gtgaagatct tttacacggt ggggcacata aaaccaacca agtgctaggg caaatcttac
     3181 tcgctaaacg aatgggtaaa acccgcatta ttgccgaaac aggagcagga cagcacggtg
     3241 tggcaaccgc attagcgtgt gcgatgttag gaatgccttg cgtggtgtat atgggcgcaa
     3301 aagatgtaga acgccaatcg ccaaatgtat tccgtatgcg tttaatggga gcggaggtga
     3361 ttccggtaca aaaaggctct tgctcgctca aagatgcctg ttgcgaggca atgcgggatt
     3421 gggcggcaaa ttatgatact acccattacc taatcggcac tgcagccggc ccgcacccgt
     3481 tcccgacaat ggtgcgtgaa tttcagaaaa tgattggcga agagatcaaa cgtcaaattt
     3541 tagcaaaaga agaccgcttg cctgatgcgg tgattgctgc cgtaggcggt ggctcaaatg
     3601 ctatcggtat gtttgcagat tttatcgaag agcaatccgt caaattgatc ggtgttgagc
     3661 cggcaggaaa aggaattgaa accggtgaac acggtgcacc gctcaaacac ggcacaacgg
     3721 ggatctattt cggtatgaaa tcgccgatta tgcaggataa agacgggcaa attgaagagt
     3781 cttactccat ttcagccggc ttagatttcc cttctgtcgg gccgcaacac gcttatttaa
     3841 atgcgacagg gcgagctgaa tatgtatcga ttaccgatgc agaggcttta gaggcattcc
     3901 aagcattagc caaaaatgag gggattattc cggcgttaga atcttcccac gccttagcct
     3961 atgcgttaaa aatgattaag cagaaccctg aaaaagagca gttattagtg gtgaatttat
     4021 cgggtcgagg cgataaagac attttcaccg tggataaaat tttaaatgga ggagagtaaa
     4081 atgagccgct ttgatacgct atttactgca ttaaaagcaa aaaacgaagg ggcttttgtg
     4141 ccgtttgtga cattatgcga tcctggtttt gaacgcagtt ttgagattat cgacacgatg
     4201 attaaaaacg gggctgatgc tttagagcta ggctttccgt tttctgaccc cctcttagac
     4261 gggccggtga ttcaagcagc gaataaacga gctttagatg gtggctatag cactgatagc
     4321 tgttttgagc tgattgccaa aattcgagct aaatatccag acattcctat cggtttacta
     4381 ctgtgtgcca atttaatttt tgtgccaacc gcagaagtat ttttccaacg ttgccaacaa
     4441 agtggagttg atgcggtgtt gattgctgat ttgcctgttt tcgctgctca agagtttgtg
     4501 ccaaccgctg aaaaatatgg aattcagccg gtgtttattt gcccgccgaa tgctgatcaa
     4561 aacaccattg aacggattgc tcaattaacc caaggctaca cttatttagt ttcccgtgcc
     4621 ggtgtaacta gtgctgaaaa ccaagctcac gcaagtaatt tggataattt agtggaaagt
     4681 ttaaaacaag ccggagctgc ccctatctta caaggttttg gcatagccaa acctgaacag
     4741 gtaaaagagg cgttaaggct tggggcagac ggggcgattt caggctcagc gattgtgaaa
     4801 attattgaac gtaatttagc tgaccaagct aatttgctca aagaacttgc cgaatttgta
     4861 caagtgatga aagcggctac gaagtaaact acaagcggtc attttttaaa tttttttgaa
     4921 aataaaagga aacagaatga aattaacaaa aattgttctt tcagttgtag cggtaattgg
     4981 tgctgttgca gttggcggaa gttggtacac aggtaagcag gttgaagaaa aatatcaaga
     5041 attggttgtt caagctaata accaacttaa acaactgagt ggcgaatttg gtgcgaatat
     5101 tgagcttaaa gatgtgcaga tcgatcgcca tttctttatc tctaatgcga aatatcgttt
     5161 agaagtggat ttgggtaatg gtaagaaatt ggactttgtt ggtaatgata aacttcatca
     5221 cggtccgcta ccgcttaatc gtttagcgaa acttaattta gctcctgtaa tgatgagtgc
     5281 ggaaagcaaa ttacaagctc ctgaagccct taaaaaattg atgggtgaac atattggcac
     5341 cggtttttct aatatcagct attcgggcga tgtggaaggg cattttgata tttccccgat
     5401 taaacatagt gatgaaacag gtcatattga aaccacgcca atcaaagtgc aatatagcta
     5461 cgaccaaaaa ttaaaagggg ttgatagcac tgttgagcta gaaagtctta agataaaagc
     5521 agaagaattt gattttcaaa ttcaaggtat agtttatgat gttcaaacag aaaataatga
     5581 aagttatcct aatttaactt taggcaaagg tagtggaaaa attaacgcta ttgagtttaa
     5641 gtctaaagat ggcaaattat ctcaaattaa agatgttgtg gtgaagggcg ataatctatt
     5701 aaaaggcgat cgtttaattt ctaccggaga tttagaggca gccactttca acattgaggg
     5761 tgttgaaatg ggtaaattaa aaatggatat ggcatacgat ttagatgcta aattaaccaa
     5821 tgatattacg cctttattat ctaatcctca aacattagaa aatgaaaaaa caggcgagtt
     5881 attattacaa ctattagcaa aatcatttaa attccatatt aataatttct cacttgaaaa
     5941 cagcaaaggc aaagttgatt tggctttatt actgaatatg gctcaatttg acccacaaaa
     6001 tcttggtaat atgcaagcgg tattgcaagc cctttcaaca agtaaattca cttcaaatat
     6061 caaccgtcaa tatgcggaag atattattcg ccaagtctca atagttacag aaaaattagg
     6121 cgaagaagag gcgaaagcat ttgccaagca acaagttgat gctgtttttc tcaatgcggg
     6181 agttgaacag tacggattaa gaaaagtaga tgacaacaat gtgaagattg aattaactat
     6241 agataacgga aaagtgaatt taaacggacg tgaactgacc gaagatgaac ttcaaatggc
     6301 tctgtttatg attgtgatgg gagcaggctc actcgggcaa taatc
//
LOCUS       DANLXK010000130         6151 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.131, whole genome shotgun sequence.
ACCESSION   DANLXK010000130 DANLXK010000000
VERSION     DANLXK010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6151
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            24..1940
                     /gene="iolC"
                     /locus_tag="PXD88_002220"
     CDS             24..1940
                     /gene="iolC"
                     /locus_tag="PXD88_002220"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL6281753.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            2229..3569
                     /locus_tag="PXD88_002221"
     CDS             2229..3569
                     /locus_tag="PXD88_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL6281754.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            3572..4912
                     /locus_tag="PXD88_002222"
     CDS             3572..4912
                     /locus_tag="PXD88_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL6281755.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            5050..5874
                     /locus_tag="PXD88_002223"
     CDS             5050..5874
                     /locus_tag="PXD88_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL6281756.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(5918..6145)
                     /locus_tag="PXD88_002224"
     CDS             complement(5918..6145)
                     /locus_tag="PXD88_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL6281757.1"
                     /translation="MILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSALKKLG
                     AVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
BASE COUNT         1737 a         1312 c         1384 g         1718 t
ORIGIN      
        1 tttacttgtt gtaaggagcg gttatggcaa cagttaatca tcaagatcgt ccattggatc
       61 ttatctgttt agggcgtgtg gcggtggact tttatgggca acaaatcggt tcccgtttgg
      121 aagagatgac cacattttca aaatacctcg gcggctcgtc aggcaatgtg gcttacggta
      181 cggcggtgca aggtttacgt tcttcaatgc tggcaagggt cggtgacgaa catatggggc
      241 gttttctacg tgaagagcta caaagcgtag gcgtggacac cagccattta attaccgata
      301 aagaacgctt aactgcactg gttattctcg gcattaaaga taaagagact tttccgctga
      361 ttttctatcg tgataactgt gcggatatgg caatcaccaa agacgatttt agcgaagcct
      421 atattgcttc cagccgttgc ttagcaatta ccggcacgca cctgtcaaac cctaaaaccc
      481 gtgaagctgt gctgaccgca ctcgaatatg cgggtagaaa tgaggtaaaa cgagcgttag
      541 atattgatta tcgccctgtg ttatggggat taacctcact cggtgatggc gaaacccgtt
      601 atatagacag tgccgaagtc accaaatcgc tacaagaagt attgcaccat ttcgatctga
      661 ttgtcggcac agaggaagaa tttcatatcg caggcggttc gaccgatact ctcactgcac
      721 tcaaaaatgt gcgtaaagtc tctaatgccg tattagtgtg caaacgtggg gcattagggt
      781 gttcagtatt tgaaggcgag ctgccgaatg atttagacgg tggcttgaat gtgtacggcg
      841 tgcgtgtaga agtgctgaat gtgctgggtg caggcgatgc ttttatgtcg ggcttactgc
      901 gtggctactt aaataacgaa ggttgggaac aagcgtgcca ctatgccaat gcgtgcggag
      961 cgttagtggt atctcgtcac ggctgttcac cggcaatgcc gaccaaacgt gaacttgacg
     1021 attatttaac ccgtgcagag agtgtaccac gtccggattt agatgagcgt ttaaaccact
     1081 tacaccgtgt caccacccgc aaaaaacagt gggaaaatct ctgtattttt gcttttgatc
     1141 accgcaaaca gttggtggat atggcaaata aagtcggtgc agatcttgct cgcataccga
     1201 aactgaaaca gctgctatta aaagcgatgg aacaaaccgc aactcaatcc ggcttaccac
     1261 aaaatcaagc agggatccta gccgatacca ctttcgggca agatgtactt aatgagatta
     1321 ccggcaaaga ttactggatt gcccgcccga ttgaagagcc gtcttcccgc ccgctggaat
     1381 tagagtatgg agatttaggc tctcagctag catcattccc acgcgatcac gtcatcaaat
     1441 gcttggcatt ttaccacccg aatgatgaaa gcggtttaaa agcccgccaa gatcgcaagt
     1501 taaaagaggt gtatcaagcc tgttgccgta ccggtcacga gctattgttg gaaattattc
     1561 tgcctgctga tatgccacag agtgaggctt tctataacca agcgatagca catttctacc
     1621 aacttggcat taagccggaa tggtggaaat tgccggatgt ttctcgcgca caatggcaag
     1681 cgatttccgc caccattgag gcaaacgatc cggactgtcg tggtatttta attttaggtt
     1741 tagatgcccc gttagaggtg tttaaagaca cctttgaaca ggcaaaaggc tgtgagaaag
     1801 tgaaaggctt tgcagtcggc cgcaccattt tcggtgaacc gtccgaaaaa tggcttgccg
     1861 gtgaattgga cgacaatacc ttgatttctg cggtatcgga gaaatatcgc actttaatcg
     1921 atctctggca acaacgttaa tcatattgct ttaagtgaaa accccttagc ttatgatatt
     1981 aagcaagggg ttttgttttg caaaaaatcc ggctaaacag accgcttgct agccgtaaaa
     2041 atgcccgaat tttcctaaaa aagcgaatat cgggcattcc tcaatctgct tatcacaaaa
     2101 taagtgtgat gaagttcaca tttcatacat aaaccccccc ctttttatcg aaacaaattg
     2161 ttttattttt atcaaaatgg aaaatgtatt tcagtttagt tctatttaga ttcaatagga
     2221 gtctgtgtat gagttgcaac acttcaccaa aacgtttcca cgccagttgg gagtcgatca
     2281 aacagcacca agtaccagag tggtatgaag atgctaagtt tgggattttt attcactggg
     2341 ggatttactc cgtacccgcc tttgccccac cgacctgtca gttaggtgaa attgatattg
     2401 atgaacagtg gttctgtaat aacccttatg cagaatggta ttttaattcc atcaatgtca
     2461 aaaaaggccc gacctacgaa catcatatca aaacttatgg cgaatccttt gcctataacg
     2521 acttcctgcc actatggaaa gcggaaaaat ggcaaccagc agaatgggcg aaactgtttg
     2581 ccaaagctgg cgccaaatat gtggtattaa ccaccaaaca tcacgatggt ttctgtctct
     2641 atccaagtaa atataccgat ttcaactgta tgcaagccgg accgaagcgg gatttaatgg
     2701 gcgagctgac tgaaaatgtg cgggagcaag gcttaaaaat gggcgcttac tactcgggca
     2761 ttatcgattg gacttattcc tctgccccga ttttcaccga aagtcaaaac ttctcaaacg
     2821 cttgcccgac ttacgaatac gctgactacg cctataaaca agtggtagag ctgatcgacc
     2881 gctataaacc agatgtattg tggaatgata ttggctggcc aaaagtgggc gagcatatgt
     2941 taccacacct atttgctcat tattacaaca gcgttcaaga gggcgtagtg gacgaccgct
     3001 ggaacaaact atggtgcgat ttcacctcca aagaatacaa acacggcgtg gcttcccgtg
     3061 ataagaaatg ggaaatgtgc cgtggtatgg gcttatcgtt cggctataac caggtagaag
     3121 acgaaagcca tttgatttcg gtgaaagact tgatttccct attggtagaa accgtagccg
     3181 acaacggcaa tttattgctg aatatcggcc cgaaagcaga tggcactatt ccgcaagagc
     3241 aagttgaacg cttattagca ctggggagct ggctggaaat aaatggagag ggaatctata
     3301 aatcccgttg tagccaacac caaaccgagc aaatcggtga tgtaacctat cgttatacca
     3361 aagttggggc ggatctctat ctttacattg atggcttaac cgaagcccaa atcagcttgc
     3421 cactgtcagt ttatggtgag ctacaagcac tcaataccga gctgaaattt accattgaaa
     3481 acaccgcaca aggcagagtg ttacatattc aaaactacca gccggattgg tatgtattag
     3541 gctttaaaat tgcagatggg gagaaatagg tatgtccgtt tcacaacgtt ttattgactt
     3601 tatgaatgcc cacgttgctc cagtagcacg tcgaatggaa aatcaaccgc atatttccgc
     3661 tattcgagac ggttttattg tagtgttacc attcttaatt gtcggcagct ttattatgat
     3721 tttgctaatt ccgccatttg atgaaaatac ccaaaatgct ttcgggcaag cttggtggcg
     3781 ttttgcgaat tgggcaagcc cttacggttg gaatttcttc caaatgtcgt ttaatgcgat
     3841 ttcattattt acctctgcca gtatcgccta caaccttgcc aaagcctata aaagagagcc
     3901 cctgccagcg gcatttctct cggtaatggc atttttgtta gtggctgcac cggtcaaaga
     3961 cggaatgatg gatattaaat tctttggcgg tattgggcta ttctctgcga tttttattgc
     4021 catttattcg gtagaaatga cccgcttgtt ggagttctta aaaattaaaa tccgcttacc
     4081 gaaagaagtg ccgcacgctg tagcagaatc tctgaatatc gtgattccaa ttttagcgat
     4141 tttactgact ctctatccgt ttgccatttg ggtggaaagt gccacaggtc gtaatattcc
     4201 acaactaatt atggacttta tggcgccatt gattgctgtg agtgactcgc taggggcaat
     4261 ttgcttgttc gttattgcta cccatttgct ctggttctta ggcattaacg gctcattggt
     4321 actaatgcaa ctttggacac cattcctact gcaaaatatg gcggcaaact tagcagcatt
     4381 ccaagctggt gaaccgctcc cctttatcat caccaattcc ttctgggatt tctatatcgt
     4441 acacggggca agtggtggtg taatagcctt ggcattcctg ctggtacgca gtaaatcggc
     4501 acacttacgc tctatcggta aaatcggctt ggttccgtcc ttcttctcta tcggtgaacc
     4561 aattgtgtat ggtgtgccaa tggtggttaa tccgctgttc tttatcccgc tgattttcgc
     4621 accactagcg aatgcggtta ttgcctacct gattttagat tttaacctta ttcaccgtgt
     4681 ttacttgatg gcaccgtgga caacaccggc accgattggg gcatatctgg tttctgccgg
     4741 tgatatttgg gcaccaattt taagtattgc actgattatt ttggatattg tgatctacta
     4801 tccattcttc aaaatgtatg aaaaagtctg cgtcgagaaa gaaaaagcac aaaatctaga
     4861 tgaaaaagca caacaggagt tgctagaaaa agcacgaatg gcagcacaat aacacttatt
     4921 tctagcgtaa ttgagagggg ctaatcgaaa gattagccct tatttttgca aaaaattgac
     4981 aaaatttatc cgcttgtaaa caagaaaagc gtataatgaa ataaaaaatt caagcagaga
     5041 taatttgaaa tgaatggacc tactcaatta gcacattttc aagaacaaat ccgaaaagag
     5101 tatgacggac taagtaaacg tttaaaacaa gtggcacagt atgtgctgga taatggcaac
     5161 agcgtggtgt ttgatacggt ttctaccatt gctgaacgag ctgatgttcc cccttcaacc
     5221 ttaatccgtt ttgcgaatgc gtttggattt agcggtttta atgaaattaa acagctttat
     5281 cgccaagata tgatggaagg cacatcacgt tacaccgaac gtgtgcaact ttttcgtcaa
     5341 attgaaccgc ttgatgagca aaacagtgag ctcaatcata ttttagatgt gttcgtacag
     5401 ggtaatacgc aggcactgca acagttatcg acacaagtca gcgaagagca gttagcacaa
     5461 acggtagata ttttacacaa tgccaaacgc atttttattg tgggtttaaa acgctcattc
     5521 agcattgcga actacctaaa ctatgcgttg caccatttgg actatgatgt ctttatgatc
     5581 gatggttcgg gcggtatgtt tgacgagcaa ttaagccgaa tccgtgaagg tgatgcggtg
     5641 attgccgtga gcttttcccc gtatgcgaat gaaacactca acgtggtgac agcaactgcc
     5701 agaccggggg taaaacatat tgcgatcact gatagccaac ttagcccact cctttcattt
     5761 agcgatgtgt cgtttattat taaagaagca caggtgagtg gttttcgatc ccagtgtgcc
     5821 acaatgacgc tcgcacaaac gattgccgtt tcactggcgt tgaaaaaagc ctagattaag
     5881 aaagtgaaag acctgcgtaa atacaggtct ttgtctatta accgattaaa gcgttaattt
     5941 catcacgata ctgcccggct tttgcaccaa aaataatttg ttgcgtatca ccgactttaa
     6001 tgacatcaac cgccccaagc tttttcagtg ccgacttatt taataaaccg ttgttatgta
     6061 acaccacacg taaacgggtt aaacaagctt caacttgctt gatattctct ttgtttccta
     6121 aagcattaat aatttctaga atgatagatt t
//
LOCUS       DANLXK010000131         6108 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.132, whole genome shotgun sequence.
ACCESSION   DANLXK010000131 DANLXK010000000
VERSION     DANLXK010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6108
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..244)
                     /locus_tag="PXD88_002225"
     CDS             complement(<1..244)
                     /locus_tag="PXD88_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281758.1"
                     /translation="MSTTLNEINITELDAGPEIKSLSLNDAVNSFLNDSACPICGKNC
                     QYWQRLKRSLNRKENQGKGDKVLVKNPSPISIEKNLI"
     gene            complement(278..1564)
                     /gene="purD"
                     /locus_tag="PXD88_002226"
     CDS             complement(278..1564)
                     /gene="purD"
                     /locus_tag="PXD88_002226"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL6281759.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1798..2172
                     /gene="rpsF"
                     /locus_tag="PXD88_002227"
     CDS             1798..2172
                     /gene="rpsF"
                     /locus_tag="PXD88_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL6281760.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2147..2521
                     /gene="priB"
                     /locus_tag="PXD88_002228"
     CDS             2147..2521
                     /gene="priB"
                     /locus_tag="PXD88_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL6281761.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2496..2723
                     /gene="rpsR"
                     /locus_tag="PXD88_002229"
     CDS             2496..2723
                     /gene="rpsR"
                     /locus_tag="PXD88_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL6281762.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2739..3188
                     /gene="rplI"
                     /locus_tag="PXD88_002230"
     CDS             2739..3188
                     /gene="rplI"
                     /locus_tag="PXD88_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL6281763.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3252..4028)
                     /gene="dnaQ"
                     /locus_tag="PXD88_002231"
     CDS             complement(3252..4028)
                     /gene="dnaQ"
                     /locus_tag="PXD88_002231"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL6281764.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4116..5786)
                     /gene="ettA"
                     /locus_tag="PXD88_002232"
     CDS             complement(4116..5786)
                     /gene="ettA"
                     /locus_tag="PXD88_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL6281765.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
BASE COUNT         1610 a         1406 c         1284 g         1808 t
ORIGIN      
        1 taattaaatt tttctcaata gaaattggag atggattctt cacaagaact ttatctccct
       61 taccttgatt ttcttttcta tttaaagatc tttttagtct ttgccaatat tgacagtttt
      121 ttccacatat agggcacgca gagtcattta gaaaagagtt tactgcatcg tttaatgata
      181 gtgatttaat ttcggggcct gcatcgagtt cagtgatatt aatttcatta agtgttgtac
      241 tcataataaa tttttccttg ttttaagagt ttataaatta tttcgcttgt tttcttgcca
      301 ctgctcggta gccaatatct cggcgataga atttgccttg ccattgaatt tgttcggcaa
      361 gttgtaaggc ttgttgttga gcttcaaata cactgttgcc aagtgcggtg gcacaaagta
      421 cacgtccacc gttggtgagc agttttcctt ctttttgctc aacccctgct aagaaaactt
      481 tttgattgga ggtagaggtc ggaatgccta tgatttcatc gcctttacgg taatcgcccg
      541 ggtagcctgc ggcagctaaa acaatgccta atgcggcttg ttcacaccat tttgattgca
      601 cgctatccaa tttgccttcg cacgctttta agcacaattc aacgaggtct gattccaaac
      661 gcatcataat cggctgagtt tcagggtctc caaaacggca gttaaattca atcactttcg
      721 gctgaccgtt tggcataatc attaagccgg catagagaaa accggtgtaa ggggtatttt
      781 cgcttgccat tccttgcacg gtcgggtaaa taatttcgtc cattacacgt tggtggattg
      841 cctttgttac caccggagca ggggagtaag cccccattcc gccggtattt aagccgctat
      901 cgccctcgcc aacacgtttg tggtcttgtg aggttgccat tggttcgaca tttttgccgt
      961 ccaccatcac aataaaactg gcctcttctc cgtctaaaaa ttcctcgatc accacacggc
     1021 tgccggcttc accaaaggcg ttgcctgaca gcatatcacg cactgcatct tccgcctctt
     1081 gtaaagtcat tgcaacaatt acgcctttgc ctgcggctaa accgtctgct ttgattacaa
     1141 tcggtgcacc tttttgtttt aagtaggcaa gtgccggttc aatttcggtg aaattttggt
     1201 attctgcggt tggaatctga tggcgagcca agaaatcttt ggtaaatgct ttagaacctt
     1261 ctaattgagc agcggcttgg gtcgggccga aaatggttaa accgtgggct cgaaaagcat
     1321 caaccacgcc aactactaac ggtgcttcag ggccgacaat cgtcaaacct acgctatttt
     1381 gtttagcgaa tgtaactaag gcaggcacgt cagtggcgga aatagctaca ttttcaatgc
     1441 cgttttccat cgctgtgccg gcattgccgg gggcgacaaa gactttgtct gcgagcggcg
     1501 attgacgaac tttccaagca agagcgtgtt cacgcccacc gttgccgata attaaaatat
     1561 tcattgggat tccttgcaaa aatgataaag caaacgtttg cgtattgtac ttgatttgtt
     1621 tatctgctga caagcagtcg tttttctcgg attttttgca aaatacgaaa ttgttgcttg
     1681 caaaataggc ttttttcagt ataatcctgc cgttcagtca cattcgtttt ttaatccttg
     1741 cttccacaag ttggtgactg gctaaagttg gaggctgcta acccgtaagg atagtcaatg
     1801 cgtcactacg aaatcgtttt tatggttcac ccggaccaaa gcgaacaagt accagcaatg
     1861 attgagcgct acacagcgtc tgtaaaagaa gctggcggtc aagttcatcg cttagaagat
     1921 tggggtcgtc gtcaattagc atacccaatc aacaaacttc acaaagcaca ctatgtgtta
     1981 atgaatgtag aagcacctca aagtgtaatc gacgagttag aaactaactt ccgttataac
     2041 gatgcagttc ttcgtaactt aatcgttcac actaaagcgg cagtaactga agcgtcacca
     2101 atggtgaaag cgaaagaaag caaagttgct gaagcggtag ctgaagttga atcagaggaa
     2161 gcaggcgagt aatttgccga ttgataattg tttaatctta agcggaacgg tttccagctt
     2221 ggttaaacaa agcctaaacc cccttggtgt gcctcattac agtttttggt tagaacatcg
     2281 ttcaatccaa accgaagtga atttagaacg ccaagcgtgg tgcaaaatcc aagtggtttt
     2341 ggcaggcaat caatttagtt atttaaccca acaaattaag ctcggtgaga gcgtgagaat
     2401 taaaggtttt atccatactc acaaagactt taacggttta aatcagttag tcttacacac
     2461 cgaacaaatt gaatttatag atcaggagaa gccaaatggc acgttatttc cgtcgtcgta
     2521 agttctgccg tttcacagcg gaaaatgttg ttgaaatcga ttacaaagat atcgctacat
     2581 taaagaacta catttctgaa agcggcaaga ttgttcctag ccgtattact ggtactcgtg
     2641 cgaagtatca acgtcaatta gctcgtgcaa ttaaacgcgc tcgctacctt gcgttacttc
     2701 catatactga taaccaccaa taatcaggag agagtacaat gcaagttatt ttattagaca
     2761 aagttgctca cttaggttct gtgggcgacc aagtaaccgt taaatctggt tttgctcgta
     2821 acttcttaat cccacaaggt aaagcggtta tggcaactgc ggcaaacatt gctcactttg
     2881 aagcacgtcg tgcagaatta gaagcaaaag ctgcagcagc attagcaact gcacaagaac
     2941 gtgcagcgaa aattgcagca ttagcagcag tatcagtatc tgcaactgca ggtgatgatg
     3001 gtcgtttatt cggttctgta tcagctaaag acatcgctga agcattaact gcagcaggtg
     3061 ttggagttgc taaatctgaa gttcgtttag gtgaaggtcc acttcgtaca accggcgaac
     3121 accaagttaa aattcactta caccctgaag tgaatgcaac tgtagcagta aacgttgttg
     3181 ctgaataatc agtagaaata gaaaacccag cgaaagctgg gttttttgtt tgctttattt
     3241 attggttaga atcagtgaga tatttctgct gtgtcggtta atgcttttgt ccataggcaa
     3301 tttcctttgg attttttctc aatcagtttc agaagtgcta aatgcgactc ttcctcttca
     3361 tcgtttgctt taagaataat tgcctcatcg gcatttaaca caattgcaga aaattcttct
     3421 tcaatatcaa taacttcact taccacttca gtttcttctt cgcctaataa tgaaatctga
     3481 ccgccggtca tcattaggaa tacatcagct aagatctccg catccagtaa cgccccgtgt
     3541 agtacacgct tgctattatc aatgccgagc ctgtcgcaaa gtgcatctaa attattccgt
     3601 ttgccggggt acattcttcg tgccatttgc aggctatcgg ttacggtaca catttctgcg
     3661 gtttttgccg gtggattagg cagataagaa aattcttgat ccataaacgc cacatcgaag
     3721 ggggcattgt gaataattaa ttccgcacct ttgatgaaat ccaaaaactc ctcggcaatt
     3781 tcagcaaaaa caggtttatc ttgcaaaaat tcattggtga tgccgtgaac tgcaatcgcc
     3841 tcttcatcta cctcacgcgg tggcttgata taaacgtgat aagttctgcc ggttaaacgg
     3901 cggttaatga cttcaaccgc accgatctca ataatattat gcccaatctg tggcgggcca
     3961 cctgccatat tcattcctgt ggtttcagta tccagcacta cttggcggat aattttttct
     4021 tctgtcatat tcaatttaaa attgtagggg tgaaatattt ttatccctta attctgcatt
     4081 tgattagggg cgaaacatat ttcgccccta cattgttact tcgcaatccg tttatatttc
     4141 actcggtgcg gttgggtggc ggcttcaccg aaggttttct tcttccactc ttcatagtcg
     4201 gagaagttac cctcgtagaa cgtcactttg ccttcatcgc cgtagtctaa aatatgggtg
     4261 gcgatacggt ctaagaacca gcggtcgtgc gaaattacca ttgcacagcc cgggaactct
     4321 aagatcgcat tttccaacgc acgcagggtt tctacgtcta agtcgttggt cggctcgtcc
     4381 agtaacaaca cgttaccgcc acgttgtagt agcttcgcca agtgtaaacg accacgttca
     4441 ccgcctgaaa gctcgcccac acgtttttgc tgatctacgc ctttgaagtt gaaacgcccc
     4501 acataagcac ggcttgggat ttcaaagtta ccaatcgtga gaatatcctg cccgttcgac
     4561 acctcttccc acacggtttt cttatcgtcc atcgcatcac ggaactgatc gaccgatgcc
     4621 attaccaccg tttcaccaag cacgattgaa ccagaatccg gctgttcttt accagaaagc
     4681 atacggaaca aggttgattt acccgcacca tttgccccga taatcccgac aatcgccccc
     4741 ttcggaatag cgaacgacaa gtcgtcaatc aaagtgcgat cgccgtaaga tttagtcagg
     4801 ttttgtacct cgatcacttt atcacctaag cgtggacccg gtggaataaa gagttcgtta
     4861 gtctcgttac gtttttgata ttcgcctgag ttaagctctt caaagcgtgc catacgagcc
     4921 ttacttttcg cttggcgacc ttttggattt tggcgtaccc attccaactc tttctcaatc
     4981 gatttttgac gagccgattc cgccgcttgc tcttgtgcca agcgtttttc tttctgctcc
     5041 aaccaagaag agtagttacc ttcccaagga atgccttcac cacggtcaag ctctaagatc
     5101 cagcccgcaa cgttgtctaa gaagtaacgg tcgtgggtaa ttgccactac ggtgccttcg
     5161 tagtcgtgga ggaaacgctc caaccacgcc accgattccg catctaagtg gttggtcggc
     5221 tcatctaaca ataacatatc cggtttttcc agcaacagac ggcaaagtgc cacacggcgg
     5281 cgttcacccc ctgataaatg ctcgattttt gcgtcccaat ccggcagacg taacgcatcg
     5341 gcagcacgct ctaactggtt ttgaaggtta tggccatcgt gggcttgaat aatcgcctct
     5401 aattccgcct gttttgccgc taatttgtcg aaatcggcat tctcatcagc atacatcgca
     5461 tagacttcat caagctgggt taaggcgttt ttcacttccg caaccgcttc ttccaccgct
     5521 tcacgcacgg tttgctgtgg ggcaagtttc ggttcttgtg gaagatagcc gattttaatt
     5581 cccggttgtg gacgagcctc gccctcgaac tctttatcta cgcccgccat aatgcgtaaa
     5641 agcgttgatt tacccgcccc gtttaagccg agcaccccga ttttcgcccc cgggaaaaag
     5701 ctcagggaaa tatctttaag aatgtgacgc ttcggcggca cgactttgcc gacacggtgc
     5761 atcgtatata caaattgagt tgacattggt tgtattcctc acaaaaaaat tcgccttatt
     5821 ttacttgaat ttacagccaa aatatagggt ggttttggct tttggtaaag taaccttttc
     5881 caatagagat gttatttgag gctgcatagt actatgcatt tctcttacct tgacaggtaa
     5941 gagaaacaaa tcctgaagga aaaaaatttt aaggaagtta ttctatgcaa tatgtatgtc
     6001 caaaaacact caaattattc aacagcattg ttggttgtta taagggagaa gattaattct
     6061 ctacctcatc aaggcttgat tttagattta atatccattt ctaaagat
//
LOCUS       DANLXK010000132         6015 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.133, whole genome shotgun sequence.
ACCESSION   DANLXK010000132 DANLXK010000000
VERSION     DANLXK010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6015
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            156..1514
                     /locus_tag="PXD88_002233"
     CDS             156..1514
                     /locus_tag="PXD88_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL6281766.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
     gene            1517..2752
                     /locus_tag="PXD88_002234"
     CDS             1517..2752
                     /locus_tag="PXD88_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL6281767.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            2745..3518
                     /locus_tag="PXD88_002235"
     CDS             2745..3518
                     /locus_tag="PXD88_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL6281768.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            3518..4144
                     /locus_tag="PXD88_002236"
     CDS             3518..4144
                     /locus_tag="PXD88_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL6281769.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            4146..4742
                     /gene="nqrE"
                     /locus_tag="PXD88_002237"
     CDS             4146..4742
                     /gene="nqrE"
                     /locus_tag="PXD88_002237"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL6281770.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            4753..5982
                     /gene="nqrF"
                     /locus_tag="PXD88_002238"
     CDS             4753..5982
                     /gene="nqrF"
                     /locus_tag="PXD88_002238"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL6281771.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
BASE COUNT         1709 a         1089 c         1391 g         1826 t
ORIGIN      
        1 agataaaggt tgatcacaga tttgagaact taatgtggct tttaaaaata ggtgggggac
       61 cattgtttat ttttaagtaa agctgcggct caatagaagc gattgcgtta gcgcaatcat
      121 attttttaac ccaaaagaaa agtagtgcaa acaatatgat tacaatcaaa aaaggcttag
      181 atcttccgat tgcgggaaaa cctgagcaag taatccataa cggtaatacc gttactgaag
      241 ttgctatgct tggtgaagaa tatgtgggta tgcgtccttc aatgaaagtg cgtgaaggcg
      301 atgtagtaaa gaaaggtcag gttctttttg aagataaaaa gaatccgggc gtggtattta
      361 ctgcccctgc aagtggtacc gtaacggcaa ttaaccgtgg cgagaagcgt gttcttcaat
      421 cggtagtaat taaagttgag ggtgatgagc aaattacctt tgctcgttat gaagccagcc
      481 aattagcttc attaacttca gagcaagtaa aacaaaacct tgtagagtca ggcttatgga
      541 cggctttccg tacacgtccg tttagcaaag tgcctgcatt agatgcagaa ccttcctcta
      601 tttttgtcaa tgcgatggat accaatccac ttgcagcaaa tccggaagtg attattgcag
      661 aacaccaaca agctttcttt gatggcttaa ctgtattaag tcgtttattt gaaagtaaaa
      721 aagtgattca tctctgtggc agtgcagact caaatatttt aaatgcggca caaagccgtc
      781 agatcaataa tgtggaaact aaccgcttta aaggtccgca ccctgcaggt ctttctggta
      841 cgcatattca ctttattgac ccggtaggtg caactaaaca agtttggtat ttaaattacc
      901 aagatgtaat tgctatcggt aaattattta cgaccggtga gctatttact gaccgtgtag
      961 tcgcattagc cgggccacaa gtgaaaaatc cacgtttggt gcgtactcgt ttaggggcga
     1021 atctttcaca attaacagcc aacgaattaa atgcgggtga aaaccgtgtc atttcaggtt
     1081 ctgtgttaag tggtgctatc gcaacgggag tacacgacta tttaggtcgt tacgcattac
     1141 aagtgtctgc tttattagaa gggcgtgaga aagcgttctt cggtatgatt gctccttact
     1201 ctgataagta ttcaattacg cgtactactt tagggcattt tgcgaagaaa ttatttaact
     1261 tcacaacagc agttcacggt agtgagcgtg caatggtacc aacaggggct tatgagcgtg
     1321 taatgccgtt ggatatcatt ccaacactct tattgcgtga tttagcagct ggagatacag
     1381 actccgctca agctttaggc tgcttagagt tagacgaaga agatttagcg ttatgtactt
     1441 ttgtgtgttc cggtaaaaac aactggggac cattattacg tcaagcgtta gataagatcg
     1501 agaaggacgg ttaaaaatgg gtttgaaaaa tctttttgaa aaaatggaac ccgctttcca
     1561 taaaggtgga aagtatgaga aatggtacac gctatttgaa gctgcctata cgattttcta
     1621 tacaccgggt acggtcactc gtaaagatgc tcacgtgcgt gatgcgattg actctaagcg
     1681 tatgatgtta attgtatggt tagcgttatt ccctgcgatg ttctacggaa tgtacaatgt
     1741 tggtgcacag ggtattctag cggcactcaa aatgggaaca ttaacggatt tagttgctaa
     1801 caactggcac tacagcttag ccgatagttt aggctctgta gctgatgcag gctggggaac
     1861 taaaatgttg ctgggggcaa cctatttcct accaatctac ttaacagtat ttgcagtggg
     1921 cggtttctgg gaagtggtgt ttgcaatggt gcgtaagcac gagatcaacg aaggtttctt
     1981 tgtaacctct atcttactag cattaattgt tcctccaaca ttaccgttat ggcaagcagc
     2041 ccttgcaact acctttggtg ttgtggtcgc aaaagaagtg ttcggtggcg tgggtaaaaa
     2101 ctttatgaac cctgcgttag ccggtcgtgc tttcttgttc tttgcttacc cgggtcaaat
     2161 ttcaggtgat gcagtatggg ttgccgcaga cggcttctca ggtgcaactg cactttctca
     2221 atgggcagtt ggtggtcaag gtgcattaca gcacgttgca accggtgaaa ccattacttg
     2281 gatggatgcg ttcttaggta atattccggg ttctatcggc gagacctcta ccttaatgtt
     2341 gattattggt gctgcaatca ttgtatttgc ccgaattgct tcttggcgaa ttattgccgg
     2401 tgtaatgatt ggtatggcgg caactgcgac attatttaat gtaatcggtt ctgataccaa
     2461 cccattattc tctatgcctt ggcattggca tttagtatta ggcggttttg cgatcggtat
     2521 gttctttatg gcaaccgacc cggtatcagc tgcatttacc aacaaaggta aatgggcata
     2581 cggtatctta atcggcttta tgtgtgtatt aatccgtgtg gtaaacccag cataccctga
     2641 aggtatgatg ttagcgatct tatttgctaa cttatttgct ccaatctttg actatttagt
     2701 agttcaaggg aatatcaaac gcagattagc gagggtagca aacaatggct aaatttaata
     2761 aagatagcgt tggcggaacg ctaaccgttg tagttttatt aagtttaatt tgttctttga
     2821 ttgtggcagg tgcggcagta atgcttaaac caacacaaga tattcagaaa caacttgata
     2881 aacagaaaaa catcttacaa gcggccggtt tattgcaaaa agataccaat gtgcaagaaa
     2941 cctataccaa atttattgag ccgaaaattg tcgatttagc aacaggtgat tacgttgagg
     3001 gtgtaaccgg ttttgatgct cgtgcagcag ctaaagatcc tgctcaaaat gtagttatcg
     3061 cacctgaaga tgataaggcg aatatcaaaa cgcgtgctaa atatgctgaa gtttatttag
     3121 taaaagatga atctggcaaa acgactcaag tagtattacc aatgcacggt aacggcttat
     3181 ggtcaattat gtacggtttc gttgcggtac aacctgatgc aaataccgtt aacggtatta
     3241 cttactatga acaaggtgaa acggcaggct taggtggcga aattgcaaac ccgaactggc
     3301 agaaaaactt tgtaggtaaa aaactgtata acgagcaaaa ccaagttgcg ttaagagtgg
     3361 gtaaaggggc atctgcagat aaagatcacg gtgttgatgg tttatctggt gcaacattaa
     3421 cctcgaacgg tgttgatggt tcattcaaat actggtttgg tcaaaatggt tttggtccat
     3481 atttagcaaa atttaaagca gcggcaggag ctaactaatg gcagacaata acaatcttaa
     3541 aaaattattg ttatcgccaa ttgtcgataa caacccgatc gcattacaga tcttaggtat
     3601 ttgttctgcg ttagcggtaa cgactcaatt acaaacagca gtagtaatgg cgattgcggt
     3661 aagtttagtt actgcattct caagtatgtt catttcaatg attcgtaact atattccaaa
     3721 tagtatccgt atcattgtgc aaatggcgat tattgcatca ttagtaattt tggttgacca
     3781 aatcttacgc gcttatgctt acgatctgtc aaaacaatta tcggtattcg taggccttat
     3841 tattaccaac tgtatcgtaa tggggcgtgc agaagcattc gcgatgaaat caggcccggt
     3901 tgaaagtttt gttgatggta tcggtaacgg tttaggctac ggtgcaatgt taattatcgt
     3961 tgccttttta cgtgaactta tcggttcagg taaaattttc ggtatcacca ttcttgaaac
     4021 tgttcaaaat ggcggttggt atcaagcaaa cggtttattc ttattagcac caagtgcgtt
     4081 ctttattatc ggatttgtga tctgggcgat tagaacgtgg aaaccggaac aagtggagaa
     4141 ataagatgga acatcttctg agtatctttg ttaagtccat atttattgaa aatatggcac
     4201 tttctttctt ccttggtatg tgtacattcc ttgcggtgtc taagaaagtt tcaactgctt
     4261 ttggtttagg tattgcggta attgtagtac ttggcattgc agttccagct aaccaattag
     4321 tttataccca cgtattaaaa gagggtgcat tagtagaagg tgtggattta agcttcttaa
     4381 actttatcac tttcatcggg gttattgcgg cacttgttca aattctggaa atgattttag
     4441 acaagttttt cccggcactt tatagtgcat taggtatctt cttaccactt atcaccgtaa
     4501 actgtgcgat ttttggtggt gtatcgttta tggtacaacg tgagtataac tttgtagaat
     4561 ctgtggttta tggcgtaggt gcaggtacag gctggatgtt agccatcgtt gcccttgcag
     4621 gtttaaccga gaaaatgaaa tattccgacg tgccggcagg cttacgtggt ttaggtatta
     4681 cctttattac ggtaggctta atggcgttag gctttatgtc attctcaggc attcaattat
     4741 aaggagcata tcgtggatag taattttatt ttcggtatta tcgcatttac ggctctggta
     4801 ttagtgcttg cggtgatcat tcttttcgct aaatcaaaat tagttgattc aggtgatatt
     4861 accatctcaa tcaacaacga tccggaaaaa ggcattacgc taccggctgg tggaaaatta
     4921 ctcggtgctt tagcaagtaa agggattttc gtttcgtcag cttgtggggg cggtggctct
     4981 tgcggtcaat gtaaagtaca agtgaaatca ggcggtggtg aaattcttcc aactgagtta
     5041 tcgcacattt ctaagaaaga agcgaaagaa ggctggcgtt tagcttgtca ggtaaacgtg
     5101 aaatcttcaa tggacgttga acttccggaa gagatctttg gtgtgaaaaa atgggaatgt
     5161 accgttatct caaacgataa caaagcaacc ttcatcaaag agcttaaact tcaaattcct
     5221 gaaggcgaag aagtaccgtt ccgtgcgggt ggttatatcc aaattgaagc tgaacctcat
     5281 accgttcatt ataaagactt cgatattcca aaagagtacc acgaagactg ggataaattt
     5341 gacttatggc gttatacttc aaaagtggac gagcatatta ttcgtgcata ctcaatggct
     5401 tcatatccgg aagagaaagg cattattatg cttaacgtgc gtattgctac acctccacca
     5461 cgcaatccgg acgtaccgcc gggtcaaatg tcttcctaca tttggtcatt aaaaccgggt
     5521 gataaagtaa caatttcagg tccattcggt gagttcttcg ctaaagatac cgatgcggaa
     5581 atggtcttta tcggtggtgg tgcaggtatg gcaccaatgc gttcacatat cttcgaccaa
     5641 ttaaaacgtt taaaatctaa acgtaaaatg tcattctggt atggtgctcg ttctgagcgt
     5701 gaaatgttct atgtggaaga ttttgatggt cttcaagcag aaaacgataa cttcaaatgg
     5761 tatgtggcac tttctgatcc attaccgggc gacagagaag attacttccg tggctttatt
     5821 cataacgtgc tttatgagaa ctacctcaaa aaccacgaag cacctgaaga ctgcgaatac
     5881 tatatgtgtg gtccaccggt gatgaatgct gcggtaatcg gtatgctgaa gagtttaggt
     5941 gtagaagacg aaaacatctt attagatgac tttggtggtt gataaacctt aacttctgac
     6001 tacaagcggt caaat
//
LOCUS       DANLXK010000133         5964 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.134, whole genome shotgun sequence.
ACCESSION   DANLXK010000133 DANLXK010000000
VERSION     DANLXK010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5964
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            18..1031
                     /gene="cas1c"
                     /locus_tag="PXD88_002239"
     CDS             18..1031
                     /gene="cas1c"
                     /locus_tag="PXD88_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL6281772.1"
                     /translation="MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGI
                     EGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGV
                     GLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1098..1391
                     /gene="cas2"
                     /locus_tag="PXD88_002240"
     CDS             1098..1391
                     /gene="cas2"
                     /locus_tag="PXD88_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL6281773.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1583..2617
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=2053..2083
                     /rpt_unit_seq="cagccacctacgcgtggctgtgaattgaaac"
     gene            2802..4277
                     /gene="rng"
                     /locus_tag="PXD88_002241"
     CDS             2802..4277
                     /gene="rng"
                     /locus_tag="PXD88_002241"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL6281774.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4431..5933
                     /gene="lysS"
                     /locus_tag="PXD88_002242"
     CDS             4431..5933
                     /gene="lysS"
                     /locus_tag="PXD88_002242"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL6281775.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
BASE COUNT         1759 a         1097 c         1393 g         1715 t
ORIGIN      
        1 taaagggatt ttcaaccatg cgcaaactac aaaacaccct ctacattacc acccaaggta
       61 gctatttgca caaagagcga gaaaccttgg tggtggagca agatcggaag aaagtggcac
      121 agttgccgat tcattccatt gggcatattt tttgttttgg caatgtgtta gtgtcgccgt
      181 ttttaatggg attttgtggc gaaaataacg taaatttagc gttttttacc gaaaatgggc
      241 gttatcttgg gcggttgcag gggcggcaaa gtggtaatgt attgttacgc cgagcccagt
      301 ataaaaagtc ggagaccaac cctgttcctg tggctcgcaa catcattgca gccaaaattc
      361 aagcatctaa gcgggtgtta caacggcaaa ttcgtaatca cggcgaaaat gctgaccttc
      421 aatcgacaat taccgcatta aattacagcc tgcaacagtt gaaaacagca gacaatttgg
      481 atttgattcg tggcattgag ggcgatgctg cggctcgtta ttttggggtg ttttctcatc
      541 ttatcaaaga aaatagcggt ttccactttg acggacgtaa tcgccgccca cctcgtgacg
      601 gtgtgaatgc gttgctttca tttctttata gcattgtagg gaaagatatt agcggggcat
      661 tgcaaggcgt ggggcttgat ccccagattg gctttttgca tgcagatcgt tcggggcgag
      721 atagcttagc tcaagatatt ttggaggaat ttcgagcgtg gtgggtggac agaatggtgc
      781 tgtcgctgat caatcgaggg caggttaagc ctgatgattt tgtgacggaa gccagtggtg
      841 cggtaacgct caagcctgaa gccagaaaat tactatttca aaccttgcaa gcgaaaaaac
      901 aagaaaaaat catccaccca tttttagagg aagaagtgga aatcggcttg ttaccttata
      961 tccaagcgat gttattggct cgtcatttgc gtggcgattt ggcagaatat ccgccgtttt
     1021 taatgcgtta aaatctgcaa aattttgttg aaatttgacc gcttgtttat gttttattca
     1081 ttgaggaatt agcaactatg ctgatgttga ttacctacga catttcattt gatgaccccg
     1141 aagggcaggc tcgcctacgc cgtattgcta agcattgttt ggattatggt gtgcgggcgc
     1201 aatattctgt gtttgagtgt gatgttactc ctgctcagtg ggtaacattg aaaaataaat
     1261 tattggcaac ttacaaccca gactgtgata gtttgcgctt ttaccattta ggcagtaaat
     1321 ggaggaataa agttgagcac catggcgcaa aaccttcagt ggatattttt aaagatacgc
     1381 tgattttata aatcgctagc ctgtagttct cataaaaatg tagcaaggtt agcgaatcta
     1441 tattgttctt taataatcaa ggaattagaa aaaataaggc acaatatatt ggcgatatgc
     1501 tatactttat ccactctcta caaaacgtta gcgaataaag ggctaaaaag cctgatattt
     1561 caatacgtta tcttataggg accagccacc tacgcgtggc tgcgaattga aaccctataa
     1621 cgagcaatgg cattttgatc tacggtaaac cagccaccta cgcgtggctg cgaattgaaa
     1681 cctttttcaa gaatcaagat taagagatcc aaacaaccag ccacctacgc gtggctgcga
     1741 attgaaacca ccgctgctac ttcggttatc ggagtagttt gcacccagcc acctacgcgt
     1801 ggctgcgaat tgaaacgtgg cacagtaaca cgagcagatg ctgataaacg cccagccacc
     1861 tacgcgtggc tgcgaattga aaccagcagc cgttgttacc gtggtgcaat gcttgcgcca
     1921 gccacctacg cgtggctgcg aattgaaact acacttattg ccatagggta gtagtaatct
     1981 tttacccagc cacctacgcg tggctgcgaa ttgaaactgc gatttttgga tttttcgggc
     2041 gataaatgat accagccacc tacgcgtggc tgtgaattga aactcgtggc tggttataca
     2101 aagaaaagca ttgttgggca gccacctacg cgtggctgtg aattgaaact taaatctaaa
     2161 gctaaagcta ttttattaat taaagcagcc acctacgcgt ggctgtgaat tgaaacttta
     2221 ccgtttaccg attggatttt aatgctagag gcagccacct acgcgtggct gtgaattgaa
     2281 accctaaatt gccgtaaaaa tctgccatta gctacgcgca gccacctacg cgtggctgtg
     2341 aattgaaacc tcataacgaa tccaatcctg ttcggttaat ccccgcagcc acctacgcgt
     2401 ggctgtgaat tgaaacaggg gcgtgtaccg caatcaattt taattataac caagcagcca
     2461 cctacgcgtg gctgtgaatt gaaacctcgt cttgaattgg aaaatcaagg gcgacaatag
     2521 gcagccacct tcgcgtggct gtgtattgaa acggtgtacc cacaaatcct atgttttcgc
     2581 cattggctgc taccttcgca tcaatatata ttgaaatatc aatggcaaat ttgtatgttg
     2641 ttaattagac tgattgcatc tgctatgtat catagtaatg acgaaaatat tctattttgc
     2701 aaaaaataat cagaaattac ccgcttgttc gaactgagtt tttgttttct aagatgtgaa
     2761 atgatacact ttagatagtt ttaaaatata gagacagtaa gatgagtagt acggaattat
     2821 tagtgaatgt taccccaagc gaaacaaggg tagcgttggt agaaaacgga atattgaaag
     2881 aattacatat tgagcgggaa gctaaacgcg ggattgttgg taatatttat aagggaaggg
     2941 tgacaagggt attaccaggt atgcaatctg cttttgtgga tatcggcttg gagaaggctg
     3001 cttttttgca cgcttctgac atcgtttcgc atacggaatg tgttgatgaa aatgaaaaga
     3061 agcaatttct ggttaaagat atttctgaat tggtgcgtga agggcaagat atagttgtac
     3121 aagtagtgaa agatccaatt ggtactaaag gagctaggct cactactgat attacgttac
     3181 catctcgtta tttagtgttt atgccagaaa atagccatgt gggagtatct cagcggattg
     3241 aaagtgaaga agagcgtgct cgtttaaaaa gcttggttga gccttattgt gatgaacttg
     3301 ggggctttat tgtacgtacc gctgcagaag aggcaactga agaaagttta aagcaagatg
     3361 ttgaattttt aaaacggttg tggcgtaaag tattagaacg aaaagggaaa tattccgcaa
     3421 aatcaatgct ttatggagag cttgcgcttg ctcaaagggt actgcgtgat tttattggta
     3481 cacatatcaa ttcggttaga atcgattcaa agctaactta tgagcaagtg cgagaatttt
     3541 tagctgagtt tatgccagaa ttaacggatt gtgtcaccct ctataccggt cagcaaactt
     3601 tatttgatgc ctatggtgta gaaaaggcaa tccaaaaggc attggataaa cgggttgatt
     3661 taaaatcggg gggctattta attattgagc aaactgaggc gatgacgact attgatatta
     3721 atactggtgc ttttgtcgga catcgtaacc ttgcacatac gattttcaac acaaatattg
     3781 aagcaataca ggcaattgca caccagctac agttgcgtaa tttaggtggt attatcatta
     3841 ttgattttat tgatatgcaa gaggaagaac atcgtgagcg cgttttacaa tcgttacaag
     3901 aggcattaaa aggcgatcgt gttaaaacca atgtgaatgg ctttactcag cttggcttgg
     3961 tggagatgac cagaaaacgt acaagggaga gtctagagcg aattctttgt tgcgattgcc
     4021 aagcttgcca agggcgtggc acagtgaaaa ctgtagagac ggtttgctat gaaattatgc
     4081 gtgaaattgt gcgtgtacat catttgttta agacagaaaa tattcacgtt tatgcagcta
     4141 aagatgttgc tgaatattta attaacgagg aaagccacgc attattggct gagcttcagg
     4201 cgtttatcgg taaaaaaatt gagattaaac ttgagccata ttatcatcaa gagcagtttg
     4261 atgtggtcgt gatgtaatct attacttggt tgaggctaaa tagttagcct caatatcgtt
     4321 agttacaaaa aatttagaaa atctgaccgc ttgtttccta tccaaattcc tcaaaataac
     4381 gtataatcgt ccagttttat ttatcctttt ttgaaatcta aggtaattca atgtctgaag
     4441 tagaaaatca agaattagat ctaaacggtg aaatgttagc ccgccgtgaa aaattaaaca
     4501 aaatccgtga gcagggtaac gcatttccaa atacattccg tcgtgatgcg ttagccaaag
     4561 atctgcacgc tcaatatgat gcagtggaag gtgaaacctt aaaagaacag aatattcaag
     4621 tgaaagttgc cggtcgtatt atgttaaaac gagtaatggg taaggcatct ttctttacca
     4681 ttcaagatgt gagcggtgcg attcagcttt atgtagctcg tgataactta agtgacagcg
     4741 tttacgaaga aaaagtcagc ctttgggatt taggcgacat tgtgggcgtc gaaggtgcgt
     4801 tatttaaaac caaaaccggt gaattaacgg ttcgttgctc tgaagttcaa cttttaacca
     4861 agtctttacg cccgttgccg gataaacatc acggtttaac ggatttagaa actcgttatc
     4921 gtcagcgtta tttagacttg atttctaatg aagaatctcg ccgtactttt atgatccgct
     4981 cgcaagtagt ttcaggcatt cgcaaattct tcttagaaag agactttatt gaagttgaaa
     5041 cgccaatgtt gcaagtgatc ccgggcggtg cggcagcgaa accgtttatc actcatcata
     5101 atgcgttaga tgtggatatg tatctgcgta ttgctccaga gctttactta aaacgtttag
     5161 ttgtgggtgg ttttgagcga gtatttgagc ttaaccgtaa cttccgtaac gaaggggttt
     5221 cagtacgcca caatcctgaa tttacaatga ttgagtacta ccaagcctat gcggattatc
     5281 acgatttaat ggataatacc gaagaactgt tacgccaatt agccttagat attcttggca
     5341 caactgacgt accttatggt gattatgtat tcgatttcgg taaaccgttt gagcgtatta
     5401 cgatgcacga tgcgattgtg aaatatggta acggcattca acgtgaagat ttagacagct
     5461 tcgagaaaag tgtggaaatt gcgaaaggct taggcattga aattcaaaaa tcttggggtt
     5521 taggctcggt agtcaatgcg atttttgaag aagtggcaga acatcaatta attcagccaa
     5581 ctttcttgat ggctcacccg gcagaaattt caccattagc tcgccgtaat gatgaaaacc
     5641 cagaggtaac tgatcgtttt gagttattta tcggtggtcg tgaaattggt aatggtttct
     5701 cagaattaaa cgatgcagaa gaccaagcag agcgttttga tgctcaagtt gcggcgaaag
     5761 atgccggtga tgatgaagca atgtttaaag atgaagactt tatcgtggca ttggaacacg
     5821 gtctgccgcc aacagcgggt gaaggtttag gaattgaccg cttagtaatg attttcgcta
     5881 acgccccatc aatccgtgat gtaattttat tcccagcgat gcgtcagaag taatcagaaa
     5941 tagaacaaaa gcacacttcg gtgt
//
LOCUS       DANLXK010000134         5956 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.135, whole genome shotgun sequence.
ACCESSION   DANLXK010000134 DANLXK010000000
VERSION     DANLXK010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(118..1482)
                     /gene="mpl"
                     /locus_tag="PXD88_002243"
     CDS             complement(118..1482)
                     /gene="mpl"
                     /locus_tag="PXD88_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL6281776.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(1778..2533)
                     /locus_tag="PXD88_002244"
     CDS             complement(1778..2533)
                     /locus_tag="PXD88_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL6281777.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            2688..3005
                     /gene="metJ"
                     /locus_tag="PXD88_002245"
     CDS             2688..3005
                     /gene="metJ"
                     /locus_tag="PXD88_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL6281778.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            3053..3283
                     /locus_tag="PXD88_002246"
     CDS             3053..3283
                     /locus_tag="PXD88_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL6281779.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            3276..4700
                     /gene="panF"
                     /locus_tag="PXD88_002247"
     CDS             3276..4700
                     /gene="panF"
                     /locus_tag="PXD88_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL6281780.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(4777..>5956)
                     /gene="nhaA"
                     /locus_tag="PXD88_002248"
     CDS             complement(4777..>5956)
                     /gene="nhaA"
                     /locus_tag="PXD88_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL6281781.1"
                     /translation="KEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTIVSVQ
                     FGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVGGMIV
                     PAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAIIDDL
                     GAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSVLKSG
                     VHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLLEMGM
                     EQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLCGIGF
                     TMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPENNATY
                     "
BASE COUNT         1713 a         1349 c         1215 g         1679 t
ORIGIN      
        1 aataaaacat gtataaatat ccagaattga ttttgaattt ttcgatgcag atcacaaaaa
       61 tagagagtta tacaaacaag cggtaaaatt ttgtaaaaaa tttaccgctt gtaaaggtta
      121 cttatcagct aatttggcaa gtagtttttg atgaataccg ccaaaggctc cgttgctcat
      181 cactaagatg tgatcggtgg gtttggcttc tttgacgact agatcgacta aatcatcaat
      241 atttgccgac caatacgccg gttgcgataa cacattggta atctcgctca cactccacgc
      301 aataatatca ggctggtaaa caaacactgc ttcggcatcg tgtaggcttg gggctatttc
      361 atctttatgg acacccattt tcattgtatt tgaacgaggc tctaacactg ccaaaatgcg
      421 ttgatttttg ccgactttac cacgcagagc atcaatagtc gcttctatcg cagttgggtg
      481 gtgagcgaaa tcatcataaa cggtaatgcc gtttacctcg cctttcactt ccaaacggcg
      541 gttagcattc acaaacttgc ctaatgcctc gcaagcccct tgcacttcaa cccctgcgtg
      601 atgagcggcg gcaatcgcca tcagagcatt atgcatattg tgcttgccga taatcgacca
      661 atgcacctcg ccttgtttaa cgcctaagtg aaacacctca aactgtgagc aatcggcatt
      721 taacggttta gcaaaccatt cgttctgttc gccaataaat tgaagctggc tgtaactgcc
      781 catttttagt gtatcttgca cgttttgatc agcgattgcc gacaaaatac agccactttg
      841 tggcatcgtg cgaacaaggt ggtggaactg gcgttgaatc gcttttaaat catcaaaaat
      901 atcggcgtgg tcaaattcca tattattgat aatcagcgtt ttcggggtgt aatgcacaaa
      961 tttagaacgc ttatcaaaga acgcagaatc gtactcgtcc gcctcaatca cgaagaatgg
     1021 actgttaccg gcacgagccg aaatgccgaa attaccggca acaccgccaa ttaaaaagcc
     1081 ggtatcaatc ccattttggt ctaaaatcca cgctaacatt cctgttgtgg tagttttgcc
     1141 gtgcgtgccg gaaaccgcca gcacccattt gtctttaagc aaatgatcgt gcaaccattg
     1201 cgggccggag gtgtaattga gttggttgtc caacacatat tccacgcacg gattaccacg
     1261 gctcatcgca ttaccaatca ccactaaatc aggagccggt tgcagttgag caacatcgta
     1321 attcgggata atttcaatac cgtgagcagc taaaaaggta ctcatcggtg ggtaaacatt
     1381 agtgtctgag ccggtcactt tatagccaag ctcacgggca atcattgcca caccgcccat
     1441 aaaggtgccg caaatgccta aaatatggat atgttttttc atctttttat atttaaaatg
     1501 ttagaatcat cccctctccc cttgtgggag agggatagat tttttcttcg tgcagaagaa
     1561 aaaatcaggg agaggggtaa gcggtcattt ttaggcttaa tattgtaagc tccctctctc
     1621 tgaaaaatat ttctgaacga aatatttttc ggtctcaata ctcgctacgc tcgctcctgt
     1681 ggagccgttg gcaaagccaa cgttcaaatg taaacatttg tcccacaagg ggagaggtgc
     1741 gctttagatg aggcgtacca tccctcgttc acatcaatta atcaatattc ttcaactctt
     1801 cttccgaaag ctgctcttgt tggctttgct caacattgcc atctttcact ttaaattcaa
     1861 ggttttggaa ataagcttca cggaaggtaa cataagggtc ttgagcttgc tctaacaacg
     1921 catcttgttc taataattta gaacgggtat ctaccccttg taccacaaat ttagcgatag
     1981 accaaggtga cccaacataa gtcagcaccg aataaccggt ttccaccgca ctaccaatac
     2041 cttgacgagg tgtggttgct ccataagccg gcatcataat ataggagccg gaaggcacgc
     2101 cgtgagcgcc taaactctca cctaaaccac gttgtccgtt atttaaacgt aacccctcat
     2161 ctaaactcgc ccagtcaatt aacccaccta aaccaaacac agtgttgatc cagaagcggt
     2221 tgaagtgaac catcgctttt ttaccttctc cttcaattaa gcggtttaca aagctcaccg
     2281 gctcatcaag gttattagca acattaatta agcctgtttt aaccgggctt ggtacatact
     2341 ctttccaacc tttagctacc ggttttaaca cataagggtc taaatagtcg taattgactt
     2401 tccacatcgc acggttaaac ccctcaagtg ggtcgtctcg cacgccggtt tctgggttaa
     2461 tgcttgatga acaagcggtt aaaaatgcca cactgagtag cataaacatc ggtttgaacg
     2521 acttgagttt cataaattga accttttgca gagaaatttg tccattgtag cgaagttgat
     2581 aaaaaataca aaacaaaaag ccgttttgcc tctagaaatc tagacgtcta gattgagata
     2641 tagttcgctt ttgattacaa tacaggcaac atttaaggag caaacaaatg gcagactgga
     2701 acggcgaata tattagccct tatgccgaac acggcaaaaa aagtgaacaa gtcaaaaaag
     2761 tgacggtatc cattccaatt aaagtattgg aaattttaac taatgagcga acccgtcgcc
     2821 aaatcaaaaa tcttcgtcac gcaaccaaca gcgaattatt gtgcgaggct tttttgcacg
     2881 cctttaccgg tcagcctttg ccgaatgatg aagacttgat gaaagacagg gcagatgaaa
     2941 tccctgaagc ggcaaaacaa aaaatgtgtg agctgggaat agacccggac gaatggcaat
     3001 attagacaca ccttgcaact gcgaggttct ttttatgttt taaggagact ttatgtatca
     3061 acaattaaca acagaagcac gttgggctgt gttgcttacg ctgatttatc tgctcggctg
     3121 ggtaggtttt gcttactttt caccgcaagg cagaggcatt ttcggctttc cgatttggtt
     3181 tgaactttct tgcattttct tacccgtact atttagctta gttgccacca ttgtcgtcaa
     3241 aaaagtgtat aaaaatatcg atcttgaggt gaataatgaa tagtgaaatg attttacccc
     3301 tgattgctta tttaattttt gtgtttggcg tagcgtttta tgcttaccgt aaacgccaag
     3361 gcggaagctt tatttcggaa tactatatcg gtgggcgttc aatgtcgggc tttgtgttag
     3421 caatgacaac cgccgccact tatgtggggg caagttcctt tatcggtggg ccgggtgctg
     3481 cctataaata cggtttaggc tgggtgttac tggcaatgat tcaagtgccc gcagtgctac
     3541 tctctcttgg agcattaggc aaaaaatttg ccttacttgc ccgcaagcat aatagtgtca
     3601 ccattaacga tatgttatta gcccgttacc aaaacaaatt tgtggtttgg attgcaggac
     3661 tagccttatt actttcgttt tttgcgatga tgacggtgca atttatcggt gccggtcgct
     3721 tacttgaaac cacactcgga atcccttacc aaacagcggt aatgattttt gccatcacag
     3781 tcgggcttta tacctttatc ggcggtttta gagcggtggt gctaaccgat actattcaag
     3841 gtttagtaat gatagtcggc acaagcattt tactcgctgg tgtgatttat gccacaggcg
     3901 gagtggaaaa tgcaatgcac acccttgaag ccattaaccc acaacttacc accccttacg
     3961 gcattgacga acgcccgctt gatttcacct ttatgacttc attttgggta ttggtttgct
     4021 ttggtttaat cggcttaccg catattgcgg tcagaagtat ggcatgcaaa aacagccaag
     4081 ccttgcaccg agcaatgatt atcggcacgg tagtcattgc aattctaatg tttggaatgc
     4141 acctttcagg cgtattaggc agagcggttg tgcctgatct caaagtgccg gatcaagtca
     4201 ttccaacact aatggtacaa gtgctaccac cggtggttgc cggtattttc cttgccgccc
     4261 caatggcagc gattatgtct tcgattgact caatgttgat tcagtcgtct tcaaccttaa
     4321 ttaaagatct ctatctggca attaagccga atgccattaa taacgagaaa aaaatcaaat
     4381 tgttctccac tattactact cttactttta cggtattact cgtgtttgcc gccctaaccc
     4441 cgcctgagat gttaatttgg ctgaacctac tctctttagg tggtttagaa gcgactttcc
     4501 tatgggtaat tgtactaggg ttgtattggg aaaaggcaaa tgccaccggt gctatttact
     4561 caatgctggc aggcttaagt tgttatgtat taatgactac ctttaagatt gctattttta
     4621 gcttccacgc cattgtgcct tcactgctaa ttggtttgat tgctttctta atcggcaacc
     4681 gatttgctcc taaggtgtaa aataaaatag gcatagtggt atggaagttc actatgccta
     4741 ttttgcaaaa tttccgctca attcaaccgc ttgtagttaa taagtggcat tattttctgg
     4801 attattctgc ttagtcgcca ttctaagtaa cgtataacct aaaatcgctg aaaccgcaga
     4861 gccgagtaaa atacctaatc gagctagagc ggtaatactt tccccagcct cacttacatc
     4921 aaaggcaaga cttgctaaga acatcgacat tgtaaaaccg ataccgcata gcaccgcaat
     4981 ggcaaaaatt tgcttaaaat taaccccttg cggcaggctg gcaaggcgga ataatactgc
     5041 taaataacta aaaccgaata cacctaaggt tttgccgata attaagccga gcgcaatacc
     5101 taacggcaat ggtgatgaga gttgctccat tcccatttct aataagtaaa cgccggcatt
     5161 agcgaaggcg aagatcggta aaatcatata agcacaccaa ggggcaagaa tatgttctag
     5221 ctcctctgcc ggtcgttccc catgtttacc tttcagcggt acgcagaagc cgatgatcac
     5281 gccggcaagg gtagcgtgaa cccctgattt taaaacggaa gtccatagca ctaagcctac
     5341 taccaaataa gcacagagtg aggtcacttt aaagcggtta agtagcacta agccgataat
     5401 cgcaatcgcg gcaatagtta aggcttgcac actgatttct tgcgaataga aaatggcgat
     5461 taccacaatc gctcctagat catcaataat cgctaatgcc aacaaaaatg cctttaaagc
     5521 caatggcaca cgagtgccta ataacgccac aatgcccacc gcaaaggcaa tatcagttgc
     5581 cattggaatt gcccaaccat tatgatattc agggtggttt tgattaatcg cccaataaat
     5641 aatcgctgga acaatcatac cacctactgc tgctatcgca ggaaaaatag ctttcttata
     5701 acttgaaagc gaaccttcaa acaactcttt ttttacttcc agccccacca acgtaaaaaa
     5761 cactgccatt aagccatcgt taacccagag taatagcggt ttattcaagg caaattcacc
     5821 aaactgtaca ctaacaatcg tttgtaaaaa ctcaaaatag aaatcactta aggaggtgtt
     5881 ggcgcacaca attgctgcaa aagcaaaaac cagaagcaat acgcctcctg aggcttcaga
     5941 ttttaaaaat tctttt
//
LOCUS       DANLXK010000135         5926 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.136, whole genome shotgun sequence.
ACCESSION   DANLXK010000135 DANLXK010000000
VERSION     DANLXK010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5926
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..417
                     /locus_tag="PXD88_002249"
     CDS             <1..417
                     /locus_tag="PXD88_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281782.1"
                     /translation="IIQVSGESFEKITSDLAEKAKELNSEYNIKCEKLGYAITLFEKN
                     SEIEKRYISLLSDFDMDTSIKGFEKLSLLMNGKNDNARKEAEEHFNELQNGLLEAQDY
                     KKDLDIKIRKLARELYNENIAQLEIEEIKEHLYKNW"
     gene            426..2492
                     /gene="glyS"
                     /locus_tag="PXD88_002250"
     CDS             426..2492
                     /gene="glyS"
                     /locus_tag="PXD88_002250"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL6281783.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(2597..3898)
                     /locus_tag="PXD88_002251"
     CDS             complement(2597..3898)
                     /locus_tag="PXD88_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL6281784.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(3912..5189)
                     /locus_tag="PXD88_002252"
     CDS             complement(3912..5189)
                     /locus_tag="PXD88_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281785.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(5218..5886)
                     /locus_tag="PXD88_002253"
     CDS             complement(5218..5886)
                     /locus_tag="PXD88_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL6281786.1"
                     /translation="MPDKLEYLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAY
                     EKSVIKIINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTH
                     IIIGHEGKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFL
                     KAVTHIEQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREF
                     KNNT"
BASE COUNT         1829 a         1149 c         1312 g         1636 t
ORIGIN      
        1 ataatacaag tatcgggcga aagtttcgaa aaaattacaa gtgacttagc agaaaaagca
       61 aaagaattaa attcagaata taatattaaa tgtgaaaaat tgggatacgc cataacatta
      121 tttgaaaaaa actcggaaat agaaaaacgc tacatatcat tattatctga ctttgatatg
      181 gatacaagta taaaaggatt tgaaaaattg tctctactaa tgaatggcaa gaatgataat
      241 gctagaaaag aagctgaaga acattttaat gaattacaaa atgggctatt agaagctcaa
      301 gattataaaa aagatttaga catcaaaatt aggaaattag ctagagagct ttataatgaa
      361 aatatagcac aattagaaat agaagaaatc aaagaacatt tatataaaaa ttggtaattt
      421 aaacaatgac aacacaaaac ttccttgccg agatcggcac agaagagctg ccaccgaagg
      481 cactcaaaaa attagcgacc gcatttgcgg agaatgtaga aaacgaatta aaccaagcag
      541 gtctttcgtt tgagaaagtg gaatggtttg ctgctcctcg ccgtttggcg gtgaaggtgt
      601 tgagccttgc ggaaagccag ccgagtaaag aggttgagaa acgagggccg gcggtgtcgg
      661 cagcgtttga tgccgaaggc aagccgacta aggcagcgga aggctgggcg aagggctgcg
      721 ggattaccgt agagcaagct gagcgtattg ccaccgacaa aggcgaatgg ttggtgcatc
      781 gtgccgtgat tgaaggtcag ccgactaaaa atctgttggt cgatattatc gccaaatcgc
      841 tggcgaactt gccgattcca aaaacgatgc gttggggcga taaaaccgag cagttcgtcc
      901 gccctgtgca taccgtgaca cttttattcg gggcggagtt gatcgaaggt gagatcttag
      961 gcgtgaaaag cggccgtact attcgtggtc accgtttctt aggtgaacgt gagttccaaa
     1021 ttgagaacgc cgatcaatat ccgcaactgt tgaaagatcg tggatctgtg gtagcagatt
     1081 tcaatgagcg taaagcctta attcttgcaa aatcacagga aaaagcaacc gctttgggtg
     1141 gcgttgccga tattgaagaa gatttgctgg acgaagtgac ctcgttggtg gaatacccga
     1201 acgtactcac cgccaagttt gaagagcgtt tccttgctgt gccggcggaa gccttagttt
     1261 acaccatgaa aggcgaccaa aaatacttcc cgatttattc aaaagacggc aaattgttac
     1321 cgcactttat ttttgtgtcg aacatcaatc cggaagaccc aagcaaaatc atcgagggta
     1381 acgaaaaagt ggttcgccca cgtttgaccg atgcggagtt cttcttcaaa accgacttaa
     1441 aacagaagtt ggaagaccaa ctgccacgcc ttgaaaccgt gttgttccag caacagcttg
     1501 gcacattgcg tgataaaacc gctcgcattg aagcgttggc aggtgaaatt gcgaagcaaa
     1561 tcggggcaga tgaaaccaaa gcgaaacgtg caggtctcct ctcaaaatgt gacctgatga
     1621 ccaatatggt gtttgaattt actgataccc aaggcgtgat gggtatgcac tatgcccgcc
     1681 acgacggtga agatgaagaa gtggcggtgg cgttaaacga gcagtatatg ccacgttttg
     1741 ctggcgataa cttgccaaat tcattggtgg cttgctcggt ggcgttggcg gacaaatttg
     1801 acacgctaac agggattttc ggcattggtc aagccccgaa aggcagtgcc gacccgttcg
     1861 ccctacgccg tgcggcactt ggctcgttgc ggattattgt ggagaaaaat ttaccgcttg
     1921 atttaaccga tttagtggcg aaatctgctc aattatttgg cgataaactc accaacaaag
     1981 acgtggttga ggacgtggtg gactttatgc tcggccgctt ccgtgcgtgg tatgagagcg
     2041 aaggcattgc ggtggacgtg atccaagccg ttctcgcccg ccgtccgacc aagcctgccg
     2101 acttcgatgc ccgtgtgcgt gccgtgtctc acttccgcac ccttgacagt gccgaagcct
     2161 tagccgcagc gaataaacgg gtgagtaaca ttcttgccaa agccgatatt gcaattggcg
     2221 acattgatgt ttcagcttgc gtagagccag cagaaaaagc attagccgag gcggttattg
     2281 cgttgaaagc cgaagttcaa ccgctgattg cacagggcga ctacaccgct gtgctggata
     2341 aattagcgaa cctccgccaa ccggttgatg ccttctttga cggagtaatg gtaaatgcag
     2401 aagaccaaaa actgcgtcaa aaccgcctcg ccattttaag cacgctacaa ggcttgttcc
     2461 tgcaagtggc ggatatttcg ctgttgcaat aacaataagt ttgcaataat tgcaaaattt
     2521 taatgaaaat agaccgcttg cagtaattgt gatctgcaag cggtcttttt tgcttgaaat
     2581 tttaccaaag gcgggattat ttaagttttg gtttattcac cataatctcg atgacttggc
     2641 ggtctgtgta ttgcatacta cgagaggcaa tgctgcataa gttattaatt gaacgatcaa
     2701 tatcgtgttc gacaattcct tcgttgcctg ttacttggct attatccata gacatcagaa
     2761 tggatttata gcttgatgtt acgctggtgg agactttcat cgcacaactg tttgaagcac
     2821 catcacagat aataccgcta atatcgccga tcatactact aattgccata ctgatattct
     2881 caaatttccc tgtgagcagc cacgctatgc cggcacagct tcccatagcc gcggttgtta
     2941 cggcacagag tgcagataat ttcggtaact tgctgtgaat ataaattgcc atgaggtgtg
     3001 ataaaaagag tgctctaatg cgttgctcat cagtgacatt taaatggcgg gcaacgacaa
     3061 caatcggcat agttgctgta attccttgat tacctgaacc cgaattgctc atagcaggta
     3121 aacttgcacc gcccattcta gcatcagagg cagaggtggt ttctataaca atgcgattaa
     3181 gcaaatcatc actgattaga cctagaccaa tctgtttttg caatgtcctt ccgatatgta
     3241 gcccataatc ggcacgtaat ccttcttgtg agagtgcgga atttaattgt gctgcttgct
     3301 caataaagcg aattttttcc aattcgattt gcatagaaaa attaaatata tcttttgccg
     3361 aaagtgaagc aaagatctca gtagtattat cgttattgac ggcacaaggt ttgcttaaaa
     3421 tagtttgccc gtttttttca atgtaaatga cattggtatg gtgttcagca atacgaacac
     3481 atactcgatt cgcttggtga aatagtgttg cttcagaata tagaatatgt tctgtttcga
     3541 aaatagagac agacacttta tcggtattta acatagcttt agcttgctta acctgttctg
     3601 gcgtaatatt ttttaatact tctaatccac catcaggctc ccctccgatt gctccaatag
     3661 ctgccgccat aggcaatccg acggttgcag ttcccggtac tgctactccc atcccatttt
     3721 tcatcaagtt aggggaaact tttgcctcaa tacgttctgg taaatgacct aaatattggc
     3781 gtgcaatggc ggatgcaagg gcgagagaaa taggttctgt acagcctaat gcagggacaa
     3841 cttcatggtt gactgcatgt aaaatggatt gtactaattt ttcgcagtga atattcatag
     3901 ataaaacctt attactctaa aaatgtgagg aatggagaaa tacataataa aatgccggta
     3961 atgataataa tattgagtgc tagcccttta tatttgaata atgcaggcac tttatagact
     4021 aaataggccg gaatcaagca cccaactaag ccaaaaatag gactacagat tgaggtaaag
     4081 cttaaaaccg gtgcatttaa tacaatcgca ctccaagcca gcagaatgga aaataacata
     4141 atccctttct gcacataatt aggattgatt ttttcagccg ggaattttct taataatagg
     4201 ttcatcacaa tgccttgagt ggcttctcta aaacctaaat ataccccgaa aaaggctgtc
     4261 ataacggcaa aaatatttaa tgcaacacct acataggttg cccaactacc agggaaaaat
     4321 tgggctgcaa ttgctaatgc ggaaacattt tgctcgtatg ctttgagcgc ttcttctctc
     4381 cccattgcaa gtgtaaaaga gacagcgtaa aaaaaaacgg taataaataa gatagcaaat
     4441 gcaatattca tcgctcgtag ggctttatag cgcgcaactt cacgagactg ttctttagca
     4501 cggtaagaaa ttaccattgg gctgagagtt tgcaagaaga gtatagaggt tagggtgaaa
     4561 ggaagggtaa tgatggcatc ttttataagt ttgccgaaag gaggcattgc accgatatta
     4621 tggagttgcc acattccaat cattgcaagc cctaaggcgg caacgacaaa tagcttagtt
     4681 aataccataa atgtagatat tttaaacagt agcttttcgc ctcgagaaga taaggcaact
     4741 aatatacaga ttagcactaa gccataaaat ggattatcag agagtagtgt attggtaatg
     4801 ccgaaggtaa gaagatagga ggcactgtcg tttgtaattg cggtagaata aacaaacatc
     4861 caaatcacta acataataaa ataaagtaca cctaaaaaga ttccccagtt tttgcccagg
     4921 tagccactaa taacggtggg gtaatctttg cattccggag attctgctaa agtattaatg
     4981 aacagacgct gaaaaaggta catcgccggg tatccgataa tagaagaaag tagaaaaacc
     5041 cacatgccca taagtcctac ttgtaccggt aaaaagacga tgcctgcccc gatagccata
     5101 ccaatactca taatgatcca gccgaagtcg gtagaatcaa attttgttgc ttgtttaaat
     5161 tcggcaggcg agagtttttg agtatccata gagtctcctt aaatcgtaac agtataatta
     5221 agtgttattt ttgaattctc ttaaatgttt ataaattgcg tggctggtta gggagagttt
     5281 ttctgccaca ataggtactg cctcttttag ctcaaagatg ccattttcaa acaaatagaa
     5341 gataatggat ttcttataga gttttgaatg tttggtagtg tgttgctcaa tgtgagtaac
     5401 tgcttttaga aaggtttctt caataagttc ttttgggtga gtaataaagt tttcactttt
     5461 ataatgaggc ggaataggat cgtaattcat aaaagagcta acggttttat ctaatggtgt
     5521 cgataaattt aaattaatac aaaataatcc gataggtttg ccctcatgcc cgataataat
     5581 atgcgtggtg gacttaacta agttaccgtt atttaaccgt gaaaagtaaa ccagctcagt
     5641 attagattga tctttttggt aacattttag taactgtaat cctttatctg taataggcga
     5701 acctattttt cggttagtat gatgtccgtt aatgatttta ataacggatt tttcataggc
     5761 attcaatgaa tgaataacca cctcacagaa ttctcctaat aaccctgcta ttgcttcact
     5821 taatgagaaa taagacagca taatttcttt gtctaaatca tgaagatact ctaatttatc
     5881 tggcataact tttactccaa tttttgtgaa ttataagaat gagtaa
//
LOCUS       DANLXK010000136         5816 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.137, whole genome shotgun sequence.
ACCESSION   DANLXK010000136 DANLXK010000000
VERSION     DANLXK010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5816
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            25..498
                     /gene="folK"
                     /locus_tag="PXD88_002254"
     CDS             25..498
                     /gene="folK"
                     /locus_tag="PXD88_002254"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL6281787.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(495..689)
                     /locus_tag="PXD88_002255"
     CDS             complement(495..689)
                     /locus_tag="PXD88_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL6281788.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(707..2482)
                     /locus_tag="PXD88_002256"
     CDS             complement(707..2482)
                     /locus_tag="PXD88_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL6281789.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            complement(2668..3414)
                     /locus_tag="PXD88_002257"
     CDS             complement(2668..3414)
                     /locus_tag="PXD88_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281790.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            complement(3418..4233)
                     /locus_tag="PXD88_002258"
     CDS             complement(3418..4233)
                     /locus_tag="PXD88_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281791.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            4323..4730
                     /gene="gloA"
                     /locus_tag="PXD88_002259"
     CDS             4323..4730
                     /gene="gloA"
                     /locus_tag="PXD88_002259"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL6281792.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            4815..5462
                     /gene="rnt"
                     /locus_tag="PXD88_002260"
     CDS             4815..5462
                     /gene="rnt"
                     /locus_tag="PXD88_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL6281793.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
BASE COUNT         1724 a         1107 c         1259 g         1726 t
ORIGIN      
        1 ttgttatatt tgtaagtata ttttatgcaa accgtctata tcgccttagg atcaaacctt
       61 gagaatccgc ttgagcagct taaacaagcg gtcgaaaaat taaaaaaatt tgcaaatgag
      121 tttgaaatca gcccgttcta cggctcaaag cctgtcggac cgcaagatca gcctgattat
      181 gtcaatgcgg tagcaaaatt tagtaccgac ctatcgccca ctgcattgct ggataaattg
      241 caaagcattg aaaatgagca gggaagagtg cgtgtacgcc gttgggggga gagaacttta
      301 gatctggata ttattttgta cggcaatcag caaattcaaa ccgagcgttt gaacgtgccg
      361 catatcgaga tgaaaaatcg ggaatttgtg attgtgccga tgtttgattt aacgcctgat
      421 ttagtactac cgacagggga aaaattagcc gatatttatg cacaatttaa agatcatcaa
      481 atgattatct tcagctaatt tttcgttttg ttctcacttt tggtgatcac cgctcgggat
      541 ttctcgtcca tcttcacatc aatgcggtga tcaacgacca cattcatatt aatcgtaatg
      601 ccttcacttg gcgtttcaag ctgtactttc ggcgtacaag cggtcaaatt cagtaaaaat
      661 attgcaaaat aaaatgtggc cggtttcata tttattccat tctttatcat cgttccagtt
      721 tttgatagag gtaattttct aatttttgtt caaattgtga gccatagtta attaagtgcc
      781 acaaatcaaa cagattttct cggtgattat agtttaaatt cacttttgat ttattttgat
      841 tggaagataa ttttaatttt ccgtctaata ctaaatcgcc tttcggcccg acattaatca
      901 gactgcgaaa atcgttaatc gtgcttttat ctactaaatg taacaaaatt tgctcggtgt
      961 aaccactttt ctgcatttct gacaacaatt caggggtaaa ggttaaatag gaagtttccg
     1021 cctgtgtcag taagccatcg caaatatagc aaggttttcc gcttaaccaa aacggcaaga
     1081 tagcgttggc tttgcctttg agatcaattt gctgatattg cataaattgc aaaatttgct
     1141 caaagtcaat ccgctctaaa ttcaggtaag ccagttcggt ttgtggtaag gcaaagcgtt
     1201 ttacattcag tttaccgcca aacaaatcaa aggataattg atttaaattc aatggcttag
     1261 ctttggtata agggtagtaa ccgttgagtt tcattgaagc gttatctaat gctaaatccc
     1321 ccagtttgat ttgggcaatt tttacatcaa gcggtttttt ggctccgaaa tgaaagcgtc
     1381 cgttttggta gcggtaggga agcgaaaatt caatcccttt tgcttcgcca ttaggtaaag
     1441 ataaaccgcc gttacgaatg gctaaatgcc caccggcaat cagcccgttt ttactgccgg
     1501 cactaaacgc cgtttcgccc cgaattgtac cgttgttgat cacccattgg ctacgaaacg
     1561 gaaaaagcgg ctggaagcct tgagcagatt gctccggcca ataaagtttg ccgataattt
     1621 ggctggcatc ttggcttaat tggcggcggg cgaacagttt gagtgggccg agttcggtgg
     1681 tattcaccgc tcctttaaaa cgtagttttt cgacttcacc atcaaaggcg agattcactc
     1741 gtggtttggg tagcacaccg ccataactga aggcaatctc aggtgattgc aacattaccg
     1801 ctccgtcaag ggtgaatttt ttgacattaa atcgaatagc ttgcgtattg ttaagcgtga
     1861 ttttagaaat ggttgtatct gctaacttta cggtggctaa atcgcctttg agttcttcca
     1921 accgcacaag ctgtttatgc cattgccctc tgccgcttaa attcacttta ctgttgaagg
     1981 ctttgaggat agatgctccc caaattcgcc atttccaact gtcttttact gcgttagcat
     2041 ctttaggatc ttggaaaaaa tctaaggctc cagccttaaa attttgtgct tgtccgtcta
     2101 aatggaactc gatattgtta aaatcagggc tttgccctct taaaattgcg tgcagtcgtc
     2161 cgtgaatacc gtgcttgtca attttaattc cggcaagtgg aaaacgtaaa tcttcaatgg
     2221 ttaaataccg ctcttttccg gtcaaacgaa gtagggagct aggcaaaaat tttacgctta
     2281 aatcgtcaaa attaccttga aaatccagtg gcacgctact gtaaagaata aaattgccgt
     2341 gtttgatatt acccgtcaaa cgaagcggta aattcagccc tttttcggtt atttctccgt
     2401 ctgaattgga gattacaata ttgcctttac cccaactgtt ttgggaaagc aggctgatac
     2461 gaatcgccgt tttgagtggc aaaaagccgt tttggttgaa tgatttcggt gtgagcttgg
     2521 tgctaacaaa cccttgcagt ggaaattgtt gggtaaagtg ccaatcaaac cgcccttgtt
     2581 gaatttctag gctttcccca tcaaacagaa aagggaaatc cagtttgtta ttttcacttt
     2641 cggcaagttc aacctgccag ttgccttcta acttttgtgc ggcatttttt tgccaactga
     2701 gaatagagcg cccttttgca aggctttatt ggcgatgatt tcataagata attgccaatc
     2761 atattcagcg gaaatagtgg gcggcagttg ggtaaaattg tcctcaattt ctgctgaaat
     2821 cctaagatta tgctgttctt tttcattcgg ttgatatgat aaatcggcat tcaaccgccc
     2881 atttgcaaaa tttgctgcaa atttgaccgc ttgttgagcg gcagttgcct gaatttcacc
     2941 ttttgaaagt gagagtttaa tagctgtttg ctcaaaaagc cgctgaagtc ttgggttgaa
     3001 atcggtaggc aaatttttcc agttaagggc gtggatagtc gcttcgccat caggaatgac
     3061 cgccagcaat gcgttgagtg aagtgtcgga attgctgtgt tcattttgtg gaaacaaggc
     3121 aaggcagcgg taatcaatat ccaatttatc gacagaaaga tggtttttct caatccaacc
     3181 caaatcggtt ttatcggcac ttagtagcgg gcaatctcga taagagagtt gaaattgagc
     3241 aagtgatgag ccttgccaat tcaggtttaa gccttgtggg agttgaactt tccacgcttt
     3301 cggcaaaatc cagttaatcg gcgtggcaag atagtggctg ggcattaaaa aatagtagat
     3361 tgccacaaca gatagaacgg ttgcaatgcc gaaaaatttt aatgcccgtt tcataaatca
     3421 gactacatta gcgaaagggt ataaaatcgc taacagcgta gcaactgtcc aagcggtcgg
     3481 atttttgatg ttttttccaa gtaataacca cgccaacatc aataaaatca caaattgtgc
     3541 tgcaaaatag atgataaatg aaagcaatgg catatccggc ataatttgta gatgttgata
     3601 aagcacaaaa gctgtccagc aataattgag aatcagcacc acaagggcgg ttttcaccaa
     3661 cagtttgagg aaaacatcta aacggctttt cgctaacatt aaataccagc cggctaataa
     3721 aatgcctaac agcacttggg cgaaattgtt ggctcgaatc ccgttaaaca atgaaggcag
     3781 ttcaaaccaa taaatggcta aatattggat aataccaata cttgatatag ccaaaccaca
     3841 atacatcaat gtgttatata aggtttgatc ttccggcagg cggaagtaga ttaagcaggc
     3901 aaaaactgca gcaatgcttg ccaccgccat tgggttatgc tttggcgtaa agcctatgga
     3961 ataaaggaaa ttccctacgg cgaaaataag taaaaagggt aaaataaagc ttaaacggct
     4021 ggcttgccct cggcagattt cgcctttcca tagcactaaa aaactgatta atgaggtcac
     4081 gaaaaacgcc aataagtaag gagaaataaa aattgaattt ttcggtgcag agtagaagtt
     4141 aagagccatt tcaataaaca gcattaatac cattggcagt gcagcgtggg ttgaaatttc
     4201 aagttttgac ggcgaatcgt gatcgtgagc catagataat cccaaaaggt ataaagaaaa
     4261 tgattttaag ccaagattat gccataatag gggtcgtttt ttaacttcag ggggaagaaa
     4321 atatgcgaat tttacataca atgttacgag ttggagattt agagcgctca attaagtttt
     4381 ataccgatgt gttaggtatg cgtctgttac gtagaagcga gaacgagcag tataagtatt
     4441 cgttagcatt tttaggctat gccgatgaaa gcgaaagtgc ggtgattgag ctgacttata
     4501 actggggtgt ggataaatat gagctaggca cggcttatgg ccatattgcg ttaggcgtag
     4561 atgatattta caaaaccatt gaagatgtgc gtgcggcagg cggtaaaatt acccgtgagc
     4621 cgggcccggt attgggtgga acaactgtga ttgcctttgc tgaagatccg gacggttata
     4681 aaatcgaatt tattgagaat aaagatgcga aagcagcgtt aggaaactaa tttttgcgaa
     4741 tatgaatatt caagcggtcg gatttgtaaa aaattttgca aatcagaccg cttgtatttt
     4801 aggttgatag ataaatggaa cagacaacgg aacaaataga ttataaatta ttaaagcatc
     4861 gttttcgtgg ctatttaccg gttgtgattg atgtggaaac agcaggctta aatgcccaaa
     4921 ctgatgcctt attggaattg gcggcaatta ctttaaaaat ggacgagcaa ggttatctag
     4981 tgccggatca acaatgccat tttcatattg cgccatttga aggggcgaat attaaccctg
     5041 agtcattaaa attcaacggc attgatattg acaaccctct aagaggagcg gttgcggaga
     5101 atattgcgat tccggaaatg ttcaaaatgg ttcgcaaagc aatgaaggag caaggctgcc
     5161 aacgggcggt gattgttgcc cacaatgcag cgttcgatca gggcttttta caggctgcga
     5221 ttaaacgaat taatgccaag cgagatccct ttcacccttt cgcgatgttt gacaccgcca
     5281 cccttgccgg ttttatgtat gggcaaaccg tgttggtaaa agcctgccag gtggcaaaaa
     5341 tcccgtttga cggtaagcaa gcgcattctg cgttgtatga taccgagcgc acggcagaac
     5401 ttttctgtgc aatggtcaat cgtttaaaag atttaggtgg tttcccacca ttatcggatt
     5461 aacgttattc atttcattta ttaacacaat ttctcgtatt gtttctataa attatcctgg
     5521 gagtgatgat agttagtggc aagtaccatt ctgcaataaa tccagccctg tagagttgta
     5581 gaaaaaataa aaaactatct atcttcagtt aagattacaa gcggttggtt ttttaaccaa
     5641 atttggcaaa aatgtgacaa aatagaccgc ttgtattcaa taacaataga ctattttttg
     5701 gctataagca ctttctgtat acccgctatt tcgaccctcc ttatttttta tctaatctaa
     5761 aaacaagcgt ttccaccttg aaatgattaa catgatcctg aaactaataa agttca
//
LOCUS       DANLXK010000137         5795 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.138, whole genome shotgun sequence.
ACCESSION   DANLXK010000137 DANLXK010000000
VERSION     DANLXK010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5795
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            568..837
                     /locus_tag="PXD88_002261"
     CDS             568..837
                     /locus_tag="PXD88_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281794.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENSLSDEDRYDIKQA
                     VLKAVGNGCSDPEMLASRCCSAIEIINRNGLNTGNGSISTSSNSV"
     gene            complement(815..1087)
                     /locus_tag="PXD88_002262"
     CDS             complement(815..1087)
                     /locus_tag="PXD88_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas2"
                     /protein_id="HDL6281795.1"
                     /translation="MRNYLISYDLYKAGQNYDGLISYIKSHQVWAAIHKSVWYIKSNK
                     SAEQIRNELLIYLDKNDSVFVTDMNSAAWNNLTEGNGEYIRQNWMR"
     gene            1368..1443
                     /locus_tag="PXD88_002263"
     tRNA            1368..1443
                     /locus_tag="PXD88_002263"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1401..1403,aa:Arg,seq:tct)
     gene            1755..2261
                     /locus_tag="PXD88_002264"
     CDS             1755..2261
                     /locus_tag="PXD88_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281796.1"
                     /translation="MEAKYNMIIELAQQQGLTHIQLTQKHCLHLAASVGKLCSGVVNN
                     AKQKIKTATGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELYGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            2265..2624
                     /locus_tag="PXD88_002265"
     CDS             2265..2624
                     /locus_tag="PXD88_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281797.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            2621..3100
                     /locus_tag="PXD88_002266"
     CDS             2621..3100
                     /locus_tag="PXD88_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281798.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKALNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFTPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNALAEMVKRTQEANNPKHA"
     gene            3234..3446
                     /locus_tag="PXD88_002267"
     CDS             3234..3446
                     /locus_tag="PXD88_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281799.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFLLVEEKIIDVLENNGFETVAT
                     ILAGSDGWCNAINAYLAEQNKHRNEF"
     gene            3459..4382
                     /locus_tag="PXD88_002268"
     CDS             3459..4382
                     /locus_tag="PXD88_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HDL6281800.1"
                     /translation="MTNQNQQVAQKQDKFPIKTLFESPNVKQKLQELLNKNAATFTTS
                     VLQIVNSNSMLRNAEPMSVFNAACMAATLNLALQNGLGFAYIVPYQNRKEKKTEAQFQ
                     LGYKGLIQLAQRSGQFKRLVAVPVYEKQLLAEDPINGYEFDWKQKPAKDEKPIGYYAY
                     FKLINEFTAEIYMTTQEVHDHANRYSQTYRKGYGVWHDNFEAMALKTVMKLLLSKQAP
                     LSVEMQQAVLADQAVVKDVENAEFAYPDNEIQEAEFTELKVSDEVFEKCKQTIINKES
                     TLQDMCDNGYEFNKEQYAELEKLENEQQSNV"
     gene            4375..5037
                     /locus_tag="PXD88_002269"
     CDS             4375..5037
                     /locus_tag="PXD88_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation protein TolB precursor"
                     /protein_id="HDL6281801.1"
                     /translation="MYKFKPRCSMLHQLMSEPRTKADREAGLISDTAKAAVREVAKFD
                     LFGYQSFDGNKYTEKGNQLEEQAIKLSGFTRGLVLKKNTERRENDWISGECDIYVPSR
                     KLIIDTKCSWDIGTHPFFADEAIAKAEKAGYDIQMQGYMWLWDCEEAQIDFVLFPTPI
                     DLIGTYESTEKLIDLVEQIPQQKRITTVTVKRDEAIIAKIKDRVKAASKYYDKLIQEA
                     MN"
     gene            5078..5779
                     /locus_tag="PXD88_002270"
     CDS             5078..5779
                     /locus_tag="PXD88_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDL6281802.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAITTFGTVFAGTLGGYIE
                     KESNLKHLGNAWVYDNAKVYDSAEVYGNAKVYDSAEVYGNAEVWGSAEVYGNAKVWGN
                     AEVWGSAEVYGNAEVWGSAKVWGNAEVWGSAEVYGNAKVYDSAEVWGSAKVRSFAVLS
                     ERKMIFWASNVGTENGTLTVYNGKDGLLVTRGCFTGTVEEFLAKSDEVHDEKTKREYQ
                     LLIEVAKSRILGEAT"
BASE COUNT         1999 a         1195 c         1205 g         1396 t
ORIGIN      
        1 aataaaccgc caggagggcg gttttctctt gcctaaaatc tgcaaaattc tcttcaaaaa
       61 cgaccgcttg caactcaatc tgtttattta ttaagcaatc aaacaacctt tctaaaaata
      121 aattcctttt aaaatcaaca aattaccttt ttgttattta tttttacctt atttaacata
      181 ccttttggta tttacaacaa tatttaccat aaggtataat gcacccatca aaacgagcta
      241 cggctcaatg ctctttaaaa atcaaattca aaaccgcttt aagcctaatg gtgaaaagta
      301 ggaagacgaa agtcggaggc agcccttaaa acgcccacta cttcaaagcg ttatgccctt
      361 tggtgcaagc aaaggaatac aagcatatac ccttatagcg gtttaggtga aagtctgggc
      421 gtgtacattg agacacaagg gagtaaccga aattcaaatt gtgcaaacgc agctctaaaa
      481 ttgcgtgaca gctcggagag acggcatttc aaattccaaa gcatatttga gaaagtgtgt
      541 tttggaatat ttaactagag gtaaattatg aaaaacaaaa attttgaaat tgcgaaagtt
      601 gttattttaa atgaacaact aggaagccct aaagatttgg aattaaaagt agtagagaat
      661 agcctatctg atgaagatag atacgacatc aaacaggcgg tacttaaggc tgtagggaat
      721 ggttgttcag atccagaaat gcttgcatca cgatgttgtt ccgcaatcga aataattaat
      781 agaaatgggc taaacactgg taatgggagt atatctacct catccaattc tgtctaatgt
      841 attcaccatt tccttcagtc agattattcc aagcagcact attcatatcc gtaacaaaga
      901 cactatcgtt cttatctaaa taaatgagca gttcattacg aatttgttct gcagatttat
      961 tagatttgat ataccaaact gatttatgaa tagcagccca aacttgatgg cttttaatat
     1021 aactaatcaa tccatcgtaa ttttgcccag ctttgtataa atcgtaagaa attaaatagt
     1081 ttctcataga agaatcctta tttgtgctgt gagagattta attatattcc ttagtgttgt
     1141 gagagacaat aaggaaactt gacggctcac aagtataaaa gagccaccat ctcaaaccgc
     1201 tctcaacaaa gagttagccc gataacctca cttggttttt tgcgtatgtt ttcccaaagt
     1261 gccgttatcc agcgaaacga atggactaga gagcggtttg agatggtgaa agccatcctc
     1321 cttagattga agtaaaccct gccgttgggg ttaagcaacg gtactttgac cgcatagttc
     1381 agtggataga gcagctgcct tctaagcagt gggtcgagag ttcgaatctc tctgcggtcg
     1441 ccatccaaaa ccgctttgcg cacatcatcg atgacgagcc tacgaagtgg aaacctaccg
     1501 tgtagagcgg ttttgaatgg ctaataaaac aatgtgaggt atcaaatgct tattaagtta
     1561 aaaagccctg aacaagcagg gcaagaagaa atctgggaag ttagcgatga ttggattgct
     1621 cctcaagaat taaatccgcc atcagaaaca tctccttaat ataacgcctg tagagttgct
     1681 caaggttaag taattactgc ggaggggctt tttacaccca aaattcagat ttttgactaa
     1741 aaaaggaacg aaaaatggaa gctaaataca acatgattat tgagctggca caacaacaag
     1801 gcttaaccca tattcaactt actcaaaaac actgtcttca tcttgctgca tcagtgggga
     1861 aactatgttc tggagtcgtt aataatgcga aacagaagat taaaacggct acgggagaaa
     1921 tttttacatt actcaccatc attaaccatc aaatccagtt cgatgaagac ttagagcttc
     1981 acacgtggaa agctagtgga acaaccccac ccgagcaaag agcgatacgt atgttacatc
     2041 atacctcgca atttgcttgg tttgctcctt ggttagtgga cagcaatgaa aaagaacaaa
     2101 accaaaatac aatcaggatt aatttattta acaaatgctc tgggattctg attgaactat
     2161 atggcattct taaagaatac gagctaactc ttgatgagtg cttagatgaa ttcttgaaaa
     2221 ataagcattg tttgaatgaa tttagtattc acaaggagta aaaaatgacg acgtttagta
     2281 tttataccag tgtatggcac gacagctcca cgaaaggctt tcgccacaac attaagcata
     2341 aacgccacga ttgctggaga gcggatatcc gcataaagca aaaaatcaat gatgtgtggg
     2401 tgcagatttc aagaatacgc aaacgcttca agtgccctga acaggcaaaa tcctttgtag
     2461 aacaatggaa acaaattgat tcccctgcat ttatgcaaca ccaaatcaac cgccaagcat
     2521 taagagaaga attatcaaac cttgagcaac gcaaacagaa gcaagacgga atacttgagg
     2581 tgattgagta tcgtattagc caaatcaagg agttactgaa atgaaacgca ataaagtaga
     2641 aagctatact atccgcttat taaaaaataa tcatacaaaa cgctacttcg gagaagttat
     2701 attaaacggc ataaaagaaa tcagcacggc agagatgatg tctgaaatta acgctattaa
     2761 ggcattaaat aagcgtattg aagctctgaa taaaaccaaa gccgttaatt tgcctaatta
     2821 tcctgaaatc agaggtcatc agcctattat gtacaattac aattttgaac aaattgagga
     2881 agatcctgaa caggttaagc ctaaaccatc aaaaccaaaa cgcaaacctt tcacacccta
     2941 cgggctaaac ggctactttg tggatagcaa cggcaatatt cgcctgcacc tagacagacg
     3001 agcaagtgcc gaaacaatta cccttgaaac tgatttcttc aacgctcttg ccgaaatggt
     3061 aaaacgtaca caagaggcaa acaatcctaa acatgcttag acaatggatt acatacggct
     3121 tatacgccct gctttttatg gttgccatca ccctcctaat gcaatgaaga gcttatccct
     3181 gaaagcacct gcaagcctga aacttgcgaa tttaaagtaa cggagaaagt gtgatgatag
     3241 gatacgaaga ctacacagat gcttcacttc aaccagaaga agaccctagc gaagaggctt
     3301 tcctcttagt ggaggagaaa attatagatg tgctagaaaa caacggcttt gaaaccgttg
     3361 ctactatcct agccggttct gatggctggt gtaacgcaat taatgcctac ctggccgaac
     3421 agaacaaaca cagaaatgaa ttttagagga ataagataat gacaaaccaa aatcaacaag
     3481 tagcacaaaa gcaagataaa ttcccgatta aaaccctatt tgaaagcccg aatgtaaagc
     3541 aaaaactaca agagctttta aacaaaaacg cagccacgtt tacaacaagc gtgttgcaga
     3601 ttgtgaatag taactcaatg ttacgcaatg ccgaaccgat gagcgtattc aacgccgctt
     3661 gtatggcagc aacgcttaat ttggcattac aaaacggctt aggttttgcc tacattgtgc
     3721 cgtaccaaaa ccgcaaagag aaaaaaaccg aagctcaatt ccaacttggc tacaaaggtt
     3781 taattcaact ggctcaacgt agcgggcaat ttaaacgcct tgttgccgtg ccggtgtatg
     3841 aaaaacaact gcttgccgaa gaccccatca acggttacga gttcgattgg aaacaaaaac
     3901 cggctaaaga tgaaaaaccg attggctatt acgcttattt caaactgata aatgaattta
     3961 ccgccgaaat ctatatgacc acgcaagaag tccacgacca cgccaaccgc tacagccaaa
     4021 cctaccgcaa aggctacggc gtatggcacg acaactttga ggcaatggct ctcaaaactg
     4081 tgatgaagct cttgctttcc aaacaagctc cattatcagt ggaaatgcaa caagcggtct
     4141 tggcagatca agcggtcgta aaagatgttg aaaatgcaga atttgcctac cctgacaacg
     4201 aaatccaaga ggcggaattt accgaactca aggtcagcga tgaggtgttt gagaaatgca
     4261 aacaaaccat catcaacaaa gaaagcacct tgcaagatat gtgcgataac ggctacgagt
     4321 tcaacaaaga gcaatatgcg gagttggaga agttagaaaa tgaacagcaa tcaaatgtat
     4381 aaattcaaac cccgttgctc aatgctccac caactaatga gcgaacctcg caccaaagcc
     4441 gaccgtgaag ccggactgat ttccgacacc gcaaaagcag cggtgcgtga agtggctaaa
     4501 tttgacctat tcggttatca atcctttgac ggcaacaaat acactgaaaa aggcaatcag
     4561 ctagaagaac aagccattaa gttaagcggt tttactcgtg gcctggttct aaaaaagaac
     4621 accgaacgcc gagaaaacga ttggatttca ggcgagtgtg atatttatgt accaagccga
     4681 aagctgatta tcgatacaaa atgcagttgg gacatcggca cgcacccgtt ttttgcagac
     4741 gaagccatcg ccaaagccga aaaagccgga tatgacattc aaatgcaagg ctatatgtgg
     4801 ctgtgggatt gcgaagaggc tcaaatcgat tttgtgttat tccctactcc aatcgacctt
     4861 atcggtactt acgaaagcac agaaaagctg attgaccttg tggaacaaat cccccaacaa
     4921 aaacgcatta ccaccgtgac ggttaagcgt gatgaagcca tcattgccaa aatcaaagac
     4981 agagtgaaag cagccagtaa gtattacgac aagcttatac aagaagctat gaattaattc
     5041 aatcgccccg aaaggggctt tttaataggt gacaaatatg acaacccaaa agaaatacga
     5101 actcctccaa aacgacacaa tcaaccacaa cggcagaaca ctctaccgca tcaaagccat
     5161 aaccacattt ggaacagtct ttgcaggtac acttggcggc tatattgaaa aagagagcaa
     5221 cctaaaacat ttaggaaatg cttgggtgta tgacaacgcc aaagtgtatg acagcgccga
     5281 agtgtatggc aacgccaaag tgtatgacag cgccgaagtg tatggcaacg ccgaagtgtg
     5341 gggcagcgcc gaagtgtatg gcaacgccaa agtgtggggc aacgccgaag tgtggggcag
     5401 cgccgaagtg tatggcaacg ccgaagtgtg gggcagcgcc aaagtgtggg gcaacgccga
     5461 agtgtggggc agcgccgaag tgtatggcaa cgccaaagtg tatgacagcg ccgaagtgtg
     5521 gggcagcgcc aaagtaagat catttgcagt tctttctgaa agaaaaatga ttttctgggc
     5581 gagcaatgtc ggcacagaga acggtacatt aaccgtttac aacggaaaag acggactgct
     5641 tgtaacaaga ggctgtttca ccggcacagt cgaagagttt ttagcaaaat ccgacgaagt
     5701 tcacgatgag aaaacgaagc gggaatatca gctactgatt gaggtagcaa aaagcagaat
     5761 tttaggagaa gcgacttaat cagtctcttt tttat
//
LOCUS       DANLXK010000138         5674 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.139, whole genome shotgun sequence.
ACCESSION   DANLXK010000138 DANLXK010000000
VERSION     DANLXK010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5674
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(124..354)
                     /locus_tag="PXD88_002271"
     CDS             complement(124..354)
                     /locus_tag="PXD88_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281803.1"
                     /translation="MALHRCPECRKRISDSLEHCIHCGFSFKEADLAIYRQKLEQRRL
                     HNQEINRKSVKLQLIWLVIFIAVIALASWITN"
     gene            complement(362..1105)
                     /locus_tag="PXD88_002272"
     CDS             complement(362..1105)
                     /locus_tag="PXD88_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281804.1"
                     /translation="MLNKHINKIINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWH
                     VEIGNASMARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFT
                     VPVILTFYLFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALF
                     NIFIFLYFSLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQS
                     FLFFNRDTHQYYHVHIEQCTDSRLCKVIV"
     gene            complement(1276..1614)
                     /locus_tag="PXD88_002273"
     CDS             complement(1276..1614)
                     /locus_tag="PXD88_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6281805.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            1873..3771
                     /gene="dnaK"
                     /locus_tag="PXD88_002274"
     CDS             1873..3771
                     /gene="dnaK"
                     /locus_tag="PXD88_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL6281806.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            3913..4215
                     /locus_tag="PXD88_002275"
     CDS             3913..4215
                     /locus_tag="PXD88_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281807.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            4438..5577
                     /gene="dnaJ"
                     /locus_tag="PXD88_002276"
     CDS             4438..5577
                     /gene="dnaJ"
                     /locus_tag="PXD88_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL6281808.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
BASE COUNT         1840 a         1109 c         1214 g         1511 t
ORIGIN      
        1 attttttatg aaaaatctta taatattgaa tatttactcc agttttaatc gagaattatg
       61 ttctttttta ttttgttatt ctctttaggt ataaaaaaac ccggtaaata ccgggctttt
      121 atttcaattg gttatccaac ttgcgagagc aattaccgca ataaaaataa ctaaccaaat
      181 aagttgtaat tttacgcttt tgcggttgat ctcctggttg tgtaatcggc gctgttctaa
      241 cttttgccga tatatcgcta aatcggcttc tttaaacgag aagccacaat gtatgcaatg
      301 ttctaaactg tcgctaatac gctttcgaca ctccggacaa cggtgtaatg ccataattac
      361 ctcaaactat tactttgcat aatcggctat ccgtacattg ttcaatatga acatggtagt
      421 attgatgagt atcacgattg aaaaacaaga aagattgatt acctcttatt tttgttccca
      481 taatgtagcc gttatcactg ttggtggata atatgtagta tttttgattc tctatttcga
      541 tgtaatcata ggtagttctt agtccggcac gcaaataacc aatatgcaat gagagcaaac
      601 tgaaatagag aaaaataaag atgttaaaca gggcaaaact tcctcctaat agcatctttc
      661 taaagtccag atcaaacttg gtattattcc atctcttgcg gaagaagaat acgctcacac
      721 cacttacaaa aatatagata aaagagatat aaatgggcac tatcccggta aataagtaaa
      781 aagtaagaat aacaggcact gtaaacacag aaaccaacac aatcaccctt aaccaaccta
      841 gatttcggaa ataatgcagc tgaaaaactt tatttagtaa actataacct agtgcataac
      901 acaagaataa gatgacggaa gtaccgaata cataagccaa acttcttgcc atactggcat
      961 tgccgatttc aacatgccac caagggtagc catgaaatat ggcttgtccc caaccgtaac
     1021 agtaagcggt agcaaaacta gttaatgtaa aaaatgcaag agaaaatgaa gaattgataa
     1081 ttttattaat gtgtttattt agcataacaa agaatgtcta tttccattaa aacctaacta
     1141 tttttgatta ctataataac ccgtattaca caaaaaacaa acatttaatt cacaccaaat
     1201 tagaaaattt gctttagtaa ggttgaaaat ataactctaa aacacgataa taaaaagctt
     1261 ctctgctagc aatggctaga ctgcttcatc gtcagtttcg ccggtacggg tgcggataac
     1321 ttgttcaata ttcgctacat aaattttgcc atcacccact tgcccagaat aggatgcatt
     1381 gagaatggca tcgatcactt catcggtttg gtaattagaa accaatatct ccaccttaat
     1441 tttaggacga aagtcaatgc ggctcatttg gctaagctct tgttcggtat gcccatattg
     1501 gcgtccaaag ccttttactt cggtaatagt cattccttga ataccgattt ctgaaagtgc
     1561 atcttgcact tggtctaatt ttgaaggttg gataatggta gtaatcagtt tcatattata
     1621 tccttctctg tttgagttgc cgtaagtata aaaagctatt gaggggtatg caaggtagga
     1681 ggtattttct ccgtgaaata ttctgccaaa tctcccccac atacaagcgg ttactttttc
     1741 caaaaatttt gcaatttttt tatttttgcc cttgaacagt gcattttcgt ccctatttat
     1801 gatttcgtct gaacgggaaa tgcaatcccg tttcttattc aaactgaatt tattattata
     1861 ggaatcataa aaatgggtaa aatcattggt attgacttag gtacaacaaa ttcttgtgtt
     1921 gcggtaatgg acggcgacaa acctcgtgta attgaaaatg cggaaggggc aagaacaacg
     1981 ccatctatca tcgcttacac cgataaagaa accttagttg gtcagccggc aaaacgtcag
     2041 gcaattacta acccgaaaaa tactttattt gcaatcaagc gtttaatcgg ccgtcgtttt
     2101 actgatgctg aagtgcaacg tgatattgaa attatgccgt ttgaaatcag caaagcagat
     2161 aacggcgatg cgtgggtaac cgtaaaaggc gataaattag caccgccgca aatctctgct
     2221 gaaatcttga aaaaaatgaa gaaaaccgca gaagatttct tgggcgaacc ggtaaccgaa
     2281 gcggttatta ctgtgcctgc atactttaac gatgcacaac gtcaggcaac taaagatgcc
     2341 ggtcgtattg caggtttaga tgtaaaacgt atcatcaacg aaccaacagc ggcagcgctt
     2401 gcttatggtt tagattctaa gaaagagaac caaacgattg ctgtttacga cttaggtggt
     2461 ggtacattcg atatttcgat tatcgaaatt gataactttg acggcgagca aacttttgaa
     2521 gtgcgtgcaa ccaacggcga tactcaccta ggtggtgaag acttcgataa ccgtgtaatc
     2581 aactacttag tggaagaatt ccaaaaagaa caaggcgttg atttacgcaa cgacccaatg
     2641 gcaatgcaac gtgtgaaaga agcagcggaa aaagcgaaaa tcgaactttc ttctgcacaa
     2701 gaaactgaag tgaaccttcc atacatcacg gcagatgcaa ccggcccgaa acacttaaac
     2761 attaaagtaa cccgtgcgaa attggaatct ttagttgaag atttagtaaa ccgttcgtta
     2821 gagccgttaa aaaccgcttt agctgatgcc ggtttatcag taggcgacat caacgatgtg
     2881 attttagtcg gtggtcaaac ccgtatgccg ttagtacaga aaaaagtggc agacttcttt
     2941 ggcaaagaac cgcgtaaaga cgttaacccg gacgaagctg tggcaatcgg tgcggcggtt
     3001 caaggcggtg tgttaagtgg ttcggtaaca gacgtattgt tattagacgt tactccgctt
     3061 tcacttggta tcgaaacaat gggtggtgta atgactacct taattgagaa aaacactacg
     3121 attccaacca agaaatcaca agtgttctca acagcggaag ataaccaatc tgcggtaact
     3181 atccacgtgt tacaaggtga gcgtaaacgt gcagcggata ataaatcttt aggtcaattc
     3241 aaccttgaag gtattaaccc tgctccacgc ggtatgccac aaattgaagt aacctttgat
     3301 attgatgcta acggtattat caatgtctct gcaaaagata aaaacactgg caaagagcaa
     3361 caaatcaaaa ttcaagcatc ttcaggctta agcgatgctg aagttgaaca aatggtgcgt
     3421 gatgcagaag cgaatgcgga agcagacaaa aaatttgaag agttagttca agctcgtaac
     3481 caagcagacg gtattgctca cgcaacccgt aagcaaatta ccgaagcagg cgatgcgtta
     3541 aacgcagacg ataaagcgaa gatcgaagcg gctatttctg agttagaaac cgcagctaaa
     3601 ggcgaagata aagccgagat cgaagcgaaa atcgaagcgt taatcaaagc ttcagaaccg
     3661 ttaatgcaag cagcacaagc aaaagcacaa ggcggcgagc aaccacaaca atctcaaaaa
     3721 gatgacggcg tggtcgatgc ggaatttgaa gaagtgaaag ataataaata atcttgcgta
     3781 acttgtaggg gcgaaatatc tttcgcccct tttgtgtaga tatataccac ctagcacgag
     3841 ccgtgctagg ttacacataa ttcagcccct ttggggctgt gcaagcggtg cttttcaaag
     3901 gaaattttac aaatgctaaa actctaccct acaacggaaa atgtacagcc accgttttat
     3961 aaaatatacg atcataaaag tggcgaaacg gtcattgcca cagaaacgga aaacagcaat
     4021 accgcgattt taatggacga ttttgtttgg tttgagcaaa ttccaactac cgaagctctt
     4081 ttggcagaca cttggtctgt gattgaaaac cgttccaaac aaggtttgct caaacgagct
     4141 tacaccaaag attttgaaaa acatttagca gacggcaaag tagaaattta tattgcggtg
     4201 aatccgcatt gttaggcttt tgatagcgca agcgtccacg cttgtgtcat cttgagccat
     4261 cttggctaga tcccatttaa ttatataaaa ctctctcccc ttgtgggaga gagaccgaaa
     4321 aatatttcgt tcagaaatat ttttcagaga gagggggaat taaccatcct acccctctcc
     4381 cacaaggggc gagggcaagc ggtcaaaaac acagaaaaat ttacaaacgg aacaacaatg
     4441 gcaaagaaag attattacga agtccttgga ctgtctaaag gggcaagcga gaaagacatc
     4501 aaacgagcat ataaacgttt ggcggcaaag catcacccgg ataaaaacca aggcagtaaa
     4561 gagtcggaag agaaatttaa agagattacc gaagcctatg acgtgctgac cgacagcgag
     4621 aaaaaagcga tgtacgacca atacggtcac gccgcctttg aacaaggcgg tgccggtgca
     4681 ggcggattcg gtggctttgg cggcggtggt ttcggtggtt ttgaagacat cttcagcgaa
     4741 atgtttggcg gtggctttgg tggcggtgga cgtcgccaac gtgtggtacg tggcgatgat
     4801 ttacgttacg acatcgagat cacccttgaa gaagctgtga aaggctgtaa aaaagatatt
     4861 cgcattcaaa ccttagctga atgtgatact tgtcatggta caggggcgga agcagggagc
     4921 aaagtggaaa cctgttcgca ttgtcacggc tccggcagag ttcgccgtca gcaaggtttc
     4981 tttgtgactg aggcagtttg tccaagttgt cacggtacag gtaaacgcat tgaaaaaccg
     5041 tgccgttctt gccacggcga tggacgtgta cagaaagcga aaaacctctc tgttaccatt
     5101 ccggcaggtg tggataccgg taatcaactt cgcttatcga gagagggagc tgcaggcgaa
     5161 aatggcgcac cggcaggcga tttatatgtg gtgattcacg ttaaagaaca cgatattttt
     5221 gagcgtgacg gttcgaattt atactgtgaa gtgccgatta gctttaccct tgcagcttta
     5281 ggcggtgaaa ttgaagtgcc aactttagac ggcaaattaa aactcaaaat tccggcagaa
     5341 actcaaaccg gtaaactatt ccgtgtacga ggcaaagggg taacaagccc tcgtggtggc
     5401 tacgcagggg atttaatctg caaagtggtg gtcgaaacgc ctgtgaattt aaccgaagaa
     5461 cagaaagcac tattacgaca atttgaagag agtttagaag gacaaggtaa acatcgtccg
     5521 aaacacgaag gtttctttga tggtgtgaag aaattctttg ataacttagg caaataaaat
     5581 cataaaaagt acatatttct taaatatgta cttttttatt atctattctt tgttgaaatc
     5641 tacttctcgg ccgttaattt ttacacctac atac
//
LOCUS       DANLXK010000139         5623 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.140, whole genome shotgun sequence.
ACCESSION   DANLXK010000139 DANLXK010000000
VERSION     DANLXK010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5623
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..167)
                     /locus_tag="PXD88_002277"
     CDS             complement(<1..167)
                     /locus_tag="PXD88_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL6281809.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFA"
     gene            complement(164..1369)
                     /locus_tag="PXD88_002278"
     CDS             complement(164..1369)
                     /locus_tag="PXD88_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL6281810.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCSILSTIFYLVALFALTFSKIEYIPFASIIGAISIIPILYI
                     MTAKVGKTV"
     gene            complement(1379..2563)
                     /gene="neuC"
                     /locus_tag="PXD88_002279"
     CDS             complement(1379..2563)
                     /gene="neuC"
                     /locus_tag="PXD88_002279"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL6281811.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2564..3823)
                     /locus_tag="PXD88_002280"
     CDS             complement(2564..3823)
                     /locus_tag="PXD88_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL6281812.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(3883..4920)
                     /gene="neuB"
                     /locus_tag="PXD88_002281"
     CDS             complement(3883..4920)
                     /gene="neuB"
                     /locus_tag="PXD88_002281"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL6281813.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(4920..5564)
                     /locus_tag="PXD88_002282"
     CDS             complement(4920..5564)
                     /locus_tag="PXD88_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL6281814.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
BASE COUNT         1779 a         1167 c          928 g         1749 t
ORIGIN      
        1 gcaaaaaatt gttcgcactt ttgggctaat ctagcttggt aaaaatcaaa tttcgcgttt
       61 tttaccgtag aaagcatcac cccatagaat cgctcattag ggtgcatttc aatgattttt
      121 tcagcaatca acacttgcaa gggcgtgcaa caaataatta aattcatacg gtttttccta
      181 cttttgccgt cattatataa agaatcggaa taatgctgat tgcaccaatg atgctggcaa
      241 aaggaatata ttcaatttta gaaaaagtta aagcaaatag tgcaactaaa taaaaaatag
      301 tagataaaat cgagcaaagc gaaattagct tatttttgcc ataaaaaaac aaataattga
      361 ctaaaatgag gtaaggcaca accaacattg tcgcaattaa aaagagaata atgtagtatt
      421 ttgttcctac aaattggcta cccagaatcc ataccactaa ttcttccgga ataaaccaca
      481 tcacaatagc aggtaatggt acaataaata aggcatacaa cgcccatttg tggatatggc
      541 tgacattaat ttttttctgc tttaaggctt cataaaaata aggcagtgtt gctttattta
      601 aggcttgaac cacaatggct agaatcatcg caatttgagc ccccattgca tataaaccta
      661 aatcctcttc gctaaattta tggtaaataa atactctgtc taactgtcct tttaagaaaa
      721 tactggaatg gtgcaaaatc aacggaatac caaagccgaa taaatacaat aaagcagttt
      781 tatggcgggc aaggctaaat ttcttcgttt ttgctctttt agcatacaaa aagtaagcga
      841 ttagaaagac taagccatta ctcatcaaaa tcgctaaaat ccgcttttcc actaaatcgg
      901 tcttaaaata ctccatcatt gcaacggtaa taactgccga aaaaatcgcc gacattaatt
      961 gaatcgttgt ataagcaagt gcctgttttt gacactgcct tacactaagc tgtacattca
     1021 aaaacgactg gaacatcgcc ccaatcgcta cataagcaat aatttcagac tggaaatacc
     1081 agcaacccaa caggataagc aaagttgcac aaagagtata taaataccct gtactcaaga
     1141 ctaaatttag tgaacgctta ccataaaaat agaaatagcg agcaaccgca ccgtcttggc
     1201 taagcccgat aaaaattaca aataaagcag caaaggtttg gtagtaggaa agctccccat
     1261 aacctgccac gccgagtttg cgtgaaaagt agggtaagag caagaaagga attgactttg
     1321 acgccaattc cccaattaaa taaatcacac tgtctttaac tgctttcata gttgcaaatt
     1381 attctgattt tttgaccgct tgcgagaaag caacatcata aaatcctttc ggttgagtat
     1441 ggtggctgtc tgctaagaat attttgattg cattgtaagc cttttccatc gcgttgtctt
     1501 gaaaatatgg atttttcata ctcggtaaac ggtgttggaa atcggctgaa atcaattttt
     1561 cgataccatc tatgatagcc tgttcattac tctctacatc aattacgctc tcatcccgta
     1621 ctcgcccttg ctggcgatta ccgatattta gcgtaccaac accacaactc ggtgcttcaa
     1681 tcaagcctga tgagctatta ccaatcaacc catttgaata tttaatcaac gctaaatact
     1741 cttccggttt gactgaggtg aaaaacttaa attgattttc atcggtgtaa gccttaaaac
     1801 gtgcataaat ttgctctgaa ttggtgtctg aatttgagcc gataaagacg aattggtatt
     1861 tgtctttaaa ctgctcaaaa gcattgagta acgcctcaat ttgctccaac acggaaacat
     1921 cggttaaggt ttccgggtgg aagaccacta aaaaataagg cgatgccgga atccctaatc
     1981 tctcgactaa ttctgcttgg gtcggcaaca ctaaatccaa actattctcc gcccctagag
     2041 aaccagtatt caccacattt tcgggcagct cgcccatttg aatcacacgc tgtctatatt
     2101 cttcagttga agttaaatgc aatttcgaca ttttggtaat acaatggcga ataaattcat
     2161 cgtaattacc taatgtttgc tcaccaccgt gcagatgaat cagcggaata ttatgcatcg
     2221 ccgcagccgt tgccaccgcc aacatctcgt aacgatcgcc tagcacaatc accgcatcat
     2281 aacgatgttg ctggaaatgt tcgccaaatc gatctaaaca ctctgccatt gaatgaataa
     2341 tggtctgatt attttcactg tttaaggtaa gcggaatacg agctgcaatc tcaaagccat
     2401 cttgctcaat gaccgtcacc gtattgccat attgcggatc caaatgcatc gcagtaacaa
     2461 ccagagagaa attcacagtc ggatcttgtg ctaatttttg taataaacgc tttacaatcc
     2521 cgtattcggc acgagatccg gtaatatagg caatattttt catttagttg agctcttttt
     2581 ccaaaatagc ggttaatttt tcataacctt ttgcatttaa atgtaatccg tcatcgctat
     2641 agcttaaatc caatttgcca tatttatcgc taaatgcctg atctaagcta atccatttca
     2701 ccgctaaatt atctttaaga tattgattta acaagcgaat atcgttgtta ttacgatcga
     2761 ctctaaatgc agttggggta atttccaaga aatagagatt aatatctcca cgaattgctg
     2821 ttaattgtgc aattaaatga ttaatatctg ctagaatttt ttcatcactc cagccagcat
     2881 atacaatatc attagtaccg aacattaaaa taatgtcttt aggtaaagca gaaattaaac
     2941 cttcatccaa aatcagatca ctgtattgtt ttgttgaaat acctgcaatt cctaaattat
     3001 taactgcctt accgtttaaa tgttcaatat cccaatattc aatgatcgaa tgcccgatta
     3061 aggctatctc tttcacttct ttaaagttct cttttttcat taaaatcgaa cgtttaatgg
     3121 tttcaagtaa gattttttct ttattgcgtt gttgcagaat aaagtagaag tactcgaaat
     3181 cttggcgatc atcaatatca atagaaacgt ctttatccat aaaataggct agacatttcg
     3241 caccatagaa gtgtttttgt ttaagatagg cttctggctt agctgtaaaa atagctccat
     3301 tcggtgaata ttcaggatga tgcaattggc gtgcatagtt agaataatcc aactgaaaat
     3361 gctttaggca ctcgtcttcc tcaatcatac gagtcaatgt cgtaggttta tgggcatcag
     3421 aaacagatac taagaaatca aattgttcga aatttttctc aaatttttca cacgattcct
     3481 taatatgctc tcctgatctc aacggcgaag ttggttgaag tagcataaaa tagtcaaact
     3541 ctactgatct atattgattt aacacatctt caatcacgac aaaagaactc gccttatcac
     3601 tggctaaatg ctcggcacgt ttaataaatt caattggata atgtgagaac aaatcaatgt
     3661 attcttggga atcagtacta acgataattt tctcaaattg ccccgactca atcgcagctt
     3721 caatagaata ggccattaac ggcttaccgt tggctaataa tacattttta ttcggcaagc
     3781 cttttgaacc ggctcgggct gtaataattg caattttttt cataaatttg accgcttgtt
     3841 aaacacaaaa tgatggagct ttcatcccat cactatatta tattacatct gattttcaaa
     3901 acgagaatct tgaattaatt gatcttcttc aaaatcctgt tgtgcttctt tacctagcac
     3961 atcataccaa aacatcgggc taatgccatt accggggcgt ttagtcgtaa tattttcggt
     4021 tgtaaaaatt tcgccttttt taattggacg tgccgcaata attgattttc ttgccacaat
     4081 tttatttttt gcttccgaat tagtgactaa tttctcggaa gaacccagcg atttttccac
     4141 cgcacgaatg ccttcacaca gtaatttcag ctcttcaggt gtaaccgaag ctttatgatc
     4201 cggaccttca aagtttttat ctaaggtaaa atgtttttca atgaaggtaa tgccgtaagg
     4261 tactgccgcc aaccctgcaa aataaccggc agagtggtca gaaaaaccta aactatagtc
     4321 gccaaactcc tgttttagct gatggaacgc atttaaattc acatcttcat aaggtgtcgg
     4381 gtactcggta ttacaatgta aaatcgtaat atcttttttc gctacaccgt tatcttccaa
     4441 tacttttaat gaggcttttg tttcttcaat ggttgccata ccggtagaaa taacgatcgt
     4501 cttgccttca atcggaagtc gtgcaatttt ttctaaatac ggcaaattgg ttaattcacc
     4561 agacggaatt ttccacactt tttgttgttg gcttgccaag aaatcaatcg actcgaaatc
     4621 gaatggcgta gagaatacct ctaaccccaa tgaacgagcg taagcctcta atttcacaaa
     4681 ctcctcataa ggtaactcta atttgcgggt catttctaat tgggaatcag cggtgccggt
     4741 cgttactttt tgatactcgg ctttaggggc atatttagag atcaacttat ccgctttaaa
     4801 ggtttggaat ttcaccgcat cgacaccaca ctctttcgct acatcaacca ttttctttgc
     4861 taacgcagga tcgccgttat ggttacaacc gatttctgcc acaataaata catttaccat
     4921 tattttatat ccttaatata ttttgctgga acgcctgcta caactgtgcg aggctccaca
     4981 tttctaatta ccactgcacc ggagccaacc aatgcacttt cacccactct tagctgtccg
     5041 ttcacaacag aggaactacc aataaaagca tgatcttcga caattacatc gccatttagt
     5101 gtcgtattgg ttgaaatatt gcaatgactg ccgataaaac aaccatgctc aaccagcgat
     5161 ttagtgttaa tgatcacatt atcgcctaca gttacgccac tgtttacaat tgccattttt
     5221 ccaacaaaca ctccaatgcc tagagtggaa tttttggaca ccaatgcggt tttatctacc
     5281 acattaatta ttctacactt atatttttgt agcttagaga atttttctaa acggtaacta
     5341 ttatttccaa tacaaataaa atagtgataa ttatctcgtt tagaaaaaca atcaattgtt
     5401 gaagctagaa taggataacc taagtgcaca ctaccttcag gcttaaagtt atcgataagt
     5461 ccacaaaatt catattgttc gtgatcaagt gaatctaaca ctgatttggc atagccaccg
     5521 gcaccgatca aaatcaattt ttctctttta gacttttgtt gcattgctat cacccatgat
     5581 gaatttcaat tcatatggag tattctaata cttttcaaga tag
//
LOCUS       DANLXK010000140         5619 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.141, whole genome shotgun sequence.
ACCESSION   DANLXK010000140 DANLXK010000000
VERSION     DANLXK010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5619
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            273..1310
                     /gene="rsgA"
                     /locus_tag="PXD88_002283"
     CDS             273..1310
                     /gene="rsgA"
                     /locus_tag="PXD88_002283"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL6281815.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
     gene            1307..1906
                     /gene="rnhB"
                     /locus_tag="PXD88_002284"
     CDS             1307..1906
                     /gene="rnhB"
                     /locus_tag="PXD88_002284"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL6281816.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            1919..2278
                     /locus_tag="PXD88_002285"
     CDS             1919..2278
                     /locus_tag="PXD88_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL6281817.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            2281..2652
                     /locus_tag="PXD88_002286"
     CDS             2281..2652
                     /locus_tag="PXD88_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL6281818.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(2687..3316)
                     /locus_tag="PXD88_002287"
     CDS             complement(2687..3316)
                     /locus_tag="PXD88_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL6281819.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(3333..3887)
                     /locus_tag="PXD88_002288"
     CDS             complement(3333..3887)
                     /locus_tag="PXD88_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL6281820.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            complement(4057..5562)
                     /locus_tag="PXD88_002289"
     CDS             complement(4057..5562)
                     /locus_tag="PXD88_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL6281821.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
BASE COUNT         1726 a         1209 c         1058 g         1626 t
ORIGIN      
        1 gcatattggt ctaggaaact agactagagt aacgaaagtt acttgtttca cttcctgtat
       61 attttgaacc gtattggttt ataaccgccc actttgggcg gtttttttct atgtaaaaaa
      121 acagcacaaa acctagatcg cattctatat tattcgctac ctttattcta gcctttctgc
      181 ttttttattc tttcacttta atctattata aaaagaggtt ttatagtatg ctaaagccta
      241 tttttcattt gcaataatta ccgagagttc ttttgagtaa accgaaatta acccataacc
      301 aacagcgtag aatccaatct aaccatcata agcgtatcaa caaaaaagag attgaatggc
      361 aagatgaaat gttaggagaa atgcaacagg gcatcgtcgt tactcgccac gttaaacacg
      421 ctgatgttga aaccgcagag gggcaaattt tccgctgtaa tatccgccgt acattgaaaa
      481 atgtagtggt gggcgatcag gtttcttggc gtaaaggtag tgagcaacta caagggatta
      541 gtggggtcat tgaagccgtc ttcccacgta aaaatgaact tacccgcccc gattattatg
      601 acggtattaa ggtgatggca tcgaacatcg atcaaatcat tattgtatca gctgtgctac
      661 ctacactttc gctgaatatt atcgaccgtt atttagtgat ttgcgaaacg gcgaatattc
      721 ctgccttaat cgtgctaaac aaaattgatt tattaaacga aagcgaacgg caagcagtta
      781 aagagcagct caaaatctat gaagagattg gctatgaaac cctatgttta tcggctgata
      841 cgggtgaaaa tatgcaggcg ttacaccaat atcttgctaa aggtacgtct atttttgtcg
      901 gacaatccgg cgtggggaaa tccagcctaa ttaaccaact gttacctgaa gtcaatgctc
      961 tcactggctc agtgagcgat aactcagggt taggtcagca caccaccact gcctctcgct
     1021 tataccattt accgcaaggc ggacagctga ttgactcgcc gggcattcga gaatttggct
     1081 tatggcattt agaacctgag caaatcacct taggctatcg agaatttcaa tcggttttag
     1141 gcacgtgcaa attccgtgat tgcaaacaca aaaccgaccc gggttgtgcc ttaagacaag
     1201 aggtcgaaaa tggcgaaatt tctgcaattc ggtttgaaaa ttaccatcgc ttaattgaaa
     1261 gcctgtctga aaccaaaagc caacgccatt tcagaaaaga agaagtataa tgaatgaatt
     1321 tatttaccct aacgcccgat taatcgccgg tgttgacgaa gtcggacgag gacctttagt
     1381 cggagcggtt gtgaccgcag ccgtgatttt agatccgaat aacccgattc agggcttaac
     1441 cgattccaaa aaattatccg agaaaaaacg ccaagctttg gcagaagaga ttaaagccaa
     1501 ggctctgagc tggtcgctag gacgtgccga gccgacagaa attgatgagc tgaatatttt
     1561 aaatgcgaca atgttggcaa tgcaacgtgc ggttgccggc ttgcatattc agccggattt
     1621 tgtgctaatt gacggcaatc gtccgccaaa actgccaatg ccggcacaag cggtggtgaa
     1681 aggagacagc ttagtggctg aaatcagtgc tgcttcgatt attgccaaag tcgcccgaga
     1741 tcaagaaatg gacgaattag accaacaatt tccgcaatac ggcttcgcac agcacaaagg
     1801 ctacccgact aaactccatt ttgaaaaatt agcagaattt ggggcaacac cttatcatcg
     1861 taagagtttt gcccctgtaa gaaaagtatt aggtttaatc gattagaagg aaaacacaat
     1921 gactacagag taccaaaaaa cgattttcac caaaatcatc aataaagaaa ttccggcaaa
     1981 tattgtctat caagatgaac ttgtgaccgc atttcgtgat attgctccac aagcacccac
     2041 gcatattttg attattccga ataaatttat tccaaccgtc aatcacgtga gtaatgaaga
     2101 tgaattagcc ctagggcgtt tatttacggt ggcggcaaaa ttagcccaag aagaaggcat
     2161 tgccgaagaa ggctatcgct tagtgatgaa ttgtaataaa aacggcgggc aggaagtgtt
     2221 ccatattcat atgcacttgt taggcggaca aaaactagga cctttagtgg caaaataact
     2281 atgcgtattt cctactttgc atttgcaatt ttttcgattt ttttgaccgc ttgtggtagc
     2341 aaacctgtca gctatttacc aaccggctca gagcctattg tcaatattga gtctgacatt
     2401 gctgaaaaga tagagctgga aacgaatagc aagcaattta gcaccacaaa tttaactgaa
     2461 tttccgctta atcttactta taaattattt tggtataata aagatggggt aacacaatcc
     2521 cataacggta tatcagatag tatcggctgg caacatctat ggttgcaacc taagcaaaaa
     2581 cagaccattg cactcattaa accgacggaa gaaagccata attaccgcct ctatttacga
     2641 ggcgtaaaat agcaaaaaag cagagccaac tgctctgctt ctttatttat ttcaaaaacg
     2701 ggttggtctg tttttcccgc ccgatagttg tgtgtggacc atgtcccggt atgatgatga
     2761 aatcatcatc taaatcaaac attttttccc tgatcgtttc caataactgg ctatggttgc
     2821 ctaaatagag atctgttcga cctatgctat tttggaataa aacatcgcca ctaaaagcaa
     2881 tacgattgtc aaaatcaaaa aaaccgatat gacccggagc atgacccggc aaatgtcgaa
     2941 cggtatagct cagctcgccg acttcgaccc gatcaccttc ctccaaccaa tgatccggca
     3001 aaaagccatt tactggtggt aatccaaatt gttggcacat ttccggcaaa cgttcaaata
     3061 aaggtttatc tgcaagatgc gagccgaaaa cctctacttg aaaatgctct ctcaactttt
     3121 ccaccgccat aatatgatct aaatgaccgt gcgtaatcaa taatttctga accttaagct
     3181 gctgagattc aacaaattga ataatgcctt cggcattatc gccgccatca ataatagccg
     3241 cattcttatt ttcgtcccaa atcaccgtgc aattttgttg aaatggacta acaggaataa
     3301 tttgcaaatt aaacataaaa taagaccgct tgttagcctc tccaagtgcg aactgggcca
     3361 gtatctacgt gaacaaagtt actacgagga taataaccta cgccaccatt attcaagctc
     3421 tcagccgctt gttttacttt atataacggc acacctgata cttggaaatc tactgcttgc
     3481 ccaagaatat ggtaactatg gctggcaaca ccacggcttc tacgacgaag tcttgcattt
     3541 gtttgtgcgg agcgatagcc acttaatact aggatttccg cattatggaa acctaaacgg
     3601 cgttgtaatt gattcaattt gacaaataat tttggatcaa ttgctttaac ttgattgata
     3661 tgacgatccc gcattaaata gtttaactgg cttaaatcgg ttttatttaa tccacctgca
     3721 ccaaatttag cagtgtaagt atcgcctgta ttcacattac gaaaacgtaa cgcagctggg
     3781 gcaggagtag aaagcgctgc cattacttga cccggcagaa ggctagcccc taaaacaagt
     3841 ccgccgagtg atagccactt acggcgttga acattaattt gtttcatttt ttcctcatag
     3901 gttagctaat gatttataga aaatcactca caaatgagcg aatttctata caccatactt
     3961 aaagtaaaaa tttacaatcg taaatttatg taagctatat tttcaaaaag ttccaagaag
     4021 atgatatctt cttggaattt atcagaaata gcacgattaa ataatgctct ttaattttcc
     4081 ccaattcaca gaatgttgtg ggattttggc atcaaagtta taaatgtccg gaagggtttg
     4141 cacttttcca ccttcaaccc aagccgtcac ataatagaga taaaccgggt tatctgaacg
     4201 aatctgagcc gaggtcgtct tcttactgcc taagacttga ttctttttat cagatcccca
     4261 acccgcttct tttaataaaa tggttgccaa ttcatcagat ttttctacac ggacacaacc
     4321 agaacttaac gcacgccccg ttttaccaaa taatcctcta tttggcgtat catgcaaata
     4381 aattgcatcc gaacttggca tattaaattt ataacgtcct aaagcgctat catcacctgc
     4441 tttctggcga atacggtatg gtgaactttt agcatttaaa tattgtgacc aatttacgct
     4501 acgcggatta attttattgc cactactatc aagaatttcg aaactagcac gatctgcata
     4561 acctgggtca cgcgctagtt taggaataat atctttagtc ataatactag tcggtacatt
     4621 ccaaggtgga ttcactacca cattgctcag cttactatac attaccggtg tacggcgatc
     4681 ttctcgccca acaatcactt tagattgaag agctaaatta ccatcacgga aataatataa
     4741 ttgatagctt gggatattca caaaaattcc attgttaaaa cttggaataa tacgtaaacg
     4801 ttgagcattg agcgctaatt tatagaaaga agccccatta ccgccaccag ctacctccgt
     4861 aacagcttta ccttttttgg ctttaggtgc tgaagagcct cctgccattg ccaatactct
     4921 ctgtgccgta tcacgatata aatggtttct tggaacaagg tctgttacaa actgcccaga
     4981 atcgccttcc ctcacggcat tagtccattg gaagatttgc tctgaagagg gcgattttgg
     5041 tacataactg cctaagttat ataaccaatt atttgcattt ttaaacacat ttttgttgta
     5101 atacaaataa tctaagaagc catcagttaa taaaatatct ctacctaaac cttccggttg
     5161 atttaagatt tgctgcaatg ccttagctga tttagaggat accccactta ctgcaaataa
     5221 tgcatattct ttcaaaaatg ctttttctgc ggctttatca ttccacattg tcgcaaattc
     5281 actgtctaaa taaaccttag ttgttgcttg gctcagcaat aaggcattat tacctatttc
     5341 ttgcttaatt cttgcttccg cttctgcaaa ttttcttgct tgctcttgac gaatttgttc
     5401 ctgttctaac gcataatcgg cctgttttac caattctgca gcacgagcct gctgagctgc
     5461 aaaacttaat tgtggtaaaa tattatcttg tacaacaggc tcagaagcca cctgagcaac
     5521 tgtggctgtt tcagccaaag ccatgccaga aaacgccacc ataataggta ataatttaaa
     5581 ggttttcacc cactcttcct cttaatattt gcaaattta
//
LOCUS       DANLXK010000141         5537 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.142, whole genome shotgun sequence.
ACCESSION   DANLXK010000141 DANLXK010000000
VERSION     DANLXK010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..208
                     /locus_tag="PXD88_002290"
     CDS             <1..208
                     /locus_tag="PXD88_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281822.1"
                     /translation="APANINSCCHQHDRDYGIRGTVTRADADKRLRECMIKNGNPIRA
                     WLFWLVVRAFGWRFYKNKEIKIEK"
     gene            365..511
                     /locus_tag="PXD88_002291"
     CDS             365..511
                     /locus_tag="PXD88_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281823.1"
                     /translation="MLAEKPKKRWRFWYAFVNGLFFDKKHCYAAYKAEVYRKQYPPEF
                     TEIT"
     gene            618..1799
                     /locus_tag="PXD88_002292"
     CDS             618..1799
                     /locus_tag="PXD88_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL6281824.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISD
                     NGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            1808..2314
                     /locus_tag="PXD88_002293"
     CDS             1808..2314
                     /locus_tag="PXD88_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL6281825.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMI
                     APVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            2393..2707
                     /locus_tag="PXD88_002294"
     CDS             2393..2707
                     /locus_tag="PXD88_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL6281826.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            2731..2847
                     /locus_tag="PXD88_002295"
     CDS             2731..2847
                     /locus_tag="PXD88_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL6281827.1"
                     /translation="MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES"
     gene            2911..3258
                     /locus_tag="PXD88_002296"
     CDS             2911..3258
                     /locus_tag="PXD88_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281828.1"
                     /translation="MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFI
                     SLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLI
                     SYIIYHSQTVTIK"
     gene            3260..3697
                     /locus_tag="PXD88_002297"
     CDS             3260..3697
                     /locus_tag="PXD88_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6281829.1"
                     /translation="MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPK
                     SQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVID
                     RISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI"
     gene            3697..4935
                     /locus_tag="PXD88_002298"
     CDS             3697..4935
                     /locus_tag="PXD88_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL6281830.1"
                     /translation="MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSA
                     INACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(5118..>5537)
                     /locus_tag="PXD88_002299"
     CDS             complement(5118..>5537)
                     /locus_tag="PXD88_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281831.1"
                     /translation="FVLSVDDLPFKYNKADEAMHIIANNIIRKKTAVANAILALNEVD
                     SRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFN
                     IWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR"
BASE COUNT         1673 a         1161 c         1260 g         1443 t
ORIGIN      
        1 cgcaccagcc aatatcaaca gttgctgtca tcaacatgac cgagactacg gcattcgtgg
       61 cacagtaaca cgagcagatg ctgataaacg cttacgtgag tgtatgatta aaaatggcaa
      121 tccaattagg gcttggttat tttggctagt tgtgagagct tttggttggc gtttttataa
      181 aaataaggag attaagattg agaaataaag ataatactgc aagcaagcaa gcaagcaagc
      241 aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc
      301 aaagtgtagc gcaatttaaa caagctccgc taccttttcc agcagccgtt gttaccgtgg
      361 tgcaatgctt gcggaaaagc cgaaaaagcg ttggcgtttt tggtatgcgt ttgtgaatgg
      421 cttgtttttt gataaaaagc attgctatgc agcctataaa gcggaggtgt atcgaaaaca
      481 gtatccaccg gagtttaccg aaatcactta atcctgttaa accccatttc acagcccgaa
      541 ccgctcgcaa cccgagcggt tattttttaa agtttacccc aacattcaac cctaaccttt
      601 cccaattaag gaatactatg tcaattttag atacctatct acacggtgtt gaggtggttg
      661 aggtcaatgc aggtggtgtc accatttcca ccgctgctac ttcggttatc ggagtagttt
      721 gcaccggaga ccaagccgat gccgagactt ttccgctgaa tacgcccgtt ttaattacta
      781 acccgttaaa ttaccttgaa aaagcaggta gcaccggcac gttacgccgc acacttaatt
      841 cgattggctc aatcgttaaa acgccaacgg tgatcgtgcg agttgccgag tcggacgata
      901 gcgacacctt aactgcaaat attgtcggca cgcaggaaaa cggcaaattt accggtatta
      961 aggcgttatt aaccgctcaa tcaaccgtgt ttgttaagcc gaaattgctt tgtgtaccac
     1021 agcacgataa tcaagccgtt gcgaccgaac tattaagcgt ggctaaaaag ctgaatgcgt
     1081 ttgcgtttat ttcagacaac ggtgcaacca ccaaagaaca ggcatatacc tatcgccaga
     1141 atttctctca gcgtgaagga atgatgatct tcggtgactg gaaatcttat aacactgata
     1201 aaaaagccta tgataccgat tatgcagtgg cccgagcttg tgcgttgcaa gcctatatcg
     1261 acaaaactgt cggctggcat aaaaacatct caaacgtaga gctagacggt gtaaccggta
     1321 tcactaaagc ggtagagttt gatattaacg agagctcaac cgaggcaaac tacctgaacg
     1381 aaaaaggcat taccatttgc ttaaaccata acggtttccg ctattggggt tcccgcactc
     1441 ttgccaccga tacccgctgg gcgtttcagc agtcggtgcg gacggctcaa atcattaaag
     1501 agacaatcgg agcaggctta gcttgggcgg tggatatgcc actcacaccg ttgcgtgtga
     1561 aaacaatgct agaggcgatt aacaacaagc tacgctcttg ggcatcgggt gatgaccctc
     1621 gcattttagg tgctcgtgtg tgggtagctg aagagatcac cgcagatatt atcaaatcag
     1681 gcaaatttgt tattaaatac gattaccatt ggattccgtc cctcgaaagc ctaggcttag
     1741 agcaacgggt caatgatgaa tatgtagtgg atttagtcaa tacacttaaa gcgttataga
     1801 ggtaaaaatg ggattaccgg caaaacttaa gaattttaat ttttcggtgg acggcacaag
     1861 ctatttgggc gaaaccaccg aagtcacaca gccgaaactg gctatgcaac ttgaagacta
     1921 ccgagcaggc ggaatgattg cccctgtggg tgtcaatatg ggtttagaga aactggagct
     1981 tgagttcaaa atcggcggac acgaagagga tttgctcaag ctatttggtg gctcaatcag
     2041 tggtaatgcg ttccgtttca acggtgcgta ccagcacgac gatgacgatt cagtcgatgc
     2101 ggtagagtta gtctgccgtg ggcgaatcgc tgaaattgac gaaggctcaa gcaaagccgg
     2161 tgatgacacc gagcatagct ataaagcctc gctaacctat tacaaaaaaa cggtgaacgg
     2221 tgtcgatatt atcgaaatcg acaccctcaa ccaaatttac attgtcgatg gcaaagaccg
     2281 cttagcggaa attcgtaagg caatgggttt atagattttc ccctaaattt tcccaaagcc
     2341 ccttcccctt ttttcaaggg gcttttaatg ataaataatt aaggattaaa caatgaaaaa
     2401 agtaacatta aaacaaggca ttttgcgtgg tgaaaaacgt attaccgaga ttgaggtgcg
     2461 taagccatta accaaacaac tgcgtggcac aaatcttacc tcattaatgc agttaagcgt
     2521 tgatgagtgg tgtattgtac tgccacgcat taccacgcca aaattagaca aagccgattt
     2581 tgccacaatg tcggcagcgg atttgctaaa actctccggc aaagccttag atttaatgag
     2641 cgaagacttc gatgaggcag acgaagagga cagcgaagaa cagggaaagg gcgagatttt
     2701 agcctaattc cacagtttgt tgatgacgct attgctgata ttgctaccgt gtttcattgg
     2761 acacccaaca cctttgatga aatgacgatt gtcgagctag ggcaatggcg agaaaaggcc
     2821 cgcttacgaa atggggtgga aagttaaaac aagcggtcgt ttttcgcaaa aaatttgcaa
     2881 aactcgaccg cttgctataa ggattttaaa atggaaatta aaacagttac attcagtaaa
     2941 gtgattacag cattcatttt tcatatcatt acgttatttg tttttactca acttaatgag
     3001 caagctcaag ctacctttat gttcttttgg tggttcttca tttctctgcg attcatcctt
     3061 gtagttggaa taatgtgtgt tggtattgaa gaacttaaaa ttcaggaata ccgacaaaca
     3121 aaagcttatg cttgttttag tttcatatcc aattttgcgt tatgcttgca gtttgtttac
     3181 tttgagcatc ttattgcggc aattttattt ttgatttctt acatcatata tcatagccaa
     3241 actgtaacga ttaaataata tgctccaaca attcgcaatg atgtcgctag gctattttgt
     3301 gtttatgcga ttgacaatcc cttatcaaga caccagccga gaaatgaact ggtcgcacgt
     3361 tcaaaatgat gtggttgggg caatgccaaa aagccaattt accggcaagg caggggagac
     3421 aatggagatt tcagccgagc tacgccctga aattaccggg ggcaaaatgt caatccttgc
     3481 ccttgagatg atggcagagc aaggctcggc ttatccgttg attagtggtt caacctttat
     3541 ggtgctaggc tggtttgtga ttgatcgaat cagcgagcag gaaaccacct tttttgcaga
     3601 cggcacgccc cgggcaatta gcttttcgat gtcgcttaaa cgggttgatg atagtctgct
     3661 cgccaatatt attgatgagg tcgcagggtt tatttaatgg attttttaac agagctaacc
     3721 aatcataacc accgcacacc ggctgtttcg gtgacggttc gcccaaagcc aagcaaagat
     3781 aatgagggcg aaaaagccaa agatatttcc accctgatca cgcaccgctt aattcaactc
     3841 accttaaccg acaaccgagg ctttgaggca gaccagctgg atttagagct ggacgacact
     3901 gatggcttac tcgctttgcc aagtcgagga gcgattttat cggtcgggtt aggctggcaa
     3961 aacagccccc tgacctacaa gggcgaatac acggtggacg agctaaccca cgatggccca
     4021 cctgataaag tcacgattcg ggcaagaagt gctgatttgc gaggcacgct gaccaatcgc
     4081 cacgagcgga gctttcaccg caccaccatt ggtaaaattg tgaaacagat cgccgaagag
     4141 aacaaactca agccgatggt gggcaaggag tttgaaaacg aagaggtgaa acacattgac
     4201 caaacaaacg aaagctctat taatctcttg caacgcctcg cagaacaatt tgatgccatt
     4261 gctaccgtga aaaacggcaa tttgattttc attaaagccg gaaacgccac aaccgcaagc
     4321 ggtaaactgt tacccctgtt tcgcattacc cgcagttcgg gggattccca tagcttttcg
     4381 attgccgaag gggataacta caaagcggtt aaagcctatt ggcacaacac gcaaaccggc
     4441 aagcgaggcg aggtgacgtg ggacgaaaac agccaagtta aaaaagtgac taagcccaca
     4501 atgcggaaaa agactaaagt aaaacgtggg gcagacggca agccgataaa aggcaaagac
     4561 ggcaagagca ttaaagagac cgtctttgta aaaggcaaag gcaggcaagt taatgcagtg
     4621 gtgcaaagta aaccgattga aagtgatagc gaggcaatta aaaccctacc ccatacttac
     4681 gctaccgcac aatcagcgat taatgcttgt aaacggaatt ttgaaaaact acaacgaggt
     4741 gtggcaactt ttagcctaac tcttgccgag ggcaatgcgg agcttatccc cgaattaccg
     4801 gttcaggttt caggctttaa ggcggagatt gatagcaacg agtggataat ttcgcaggtt
     4861 acgcacagtt taaataaagg tggtgggttt acgacagcgt tagagatgga gttgaagccg
     4921 aagtctgaag actaacgcta tttttataaa atcactataa aaaagccttg catctctgat
     4981 cttgaacaag taatattaat caaagttaca gatttattta cataaaacac aaagaatcat
     5041 aggggcggct actttgtgtg attccgccca gtgaggaaat tgggcgttgt tttacacata
     5101 taagtccttg aggacactca ccgtgcaggc tggaaggtct gctctttctt ttttaatagt
     5161 gggtatttaa gttttgtttc tctcgttctt actattctag gtccttttgt agggtcgtaa
     5221 aaataccaaa tattaaattt cttttcctcc tgtaaagtat cataagttaa tttatcccaa
     5281 cctaggtgca aagcaatcca ttttgttagt tcttttttac gttccgatgt aatatcattt
     5341 tgatagctac ttaatattgc tcctaataat aaatcgcata gttgaacgcc agatgattta
     5401 cgagaatcta cttcgtttaa tgctagaata gcatttgcta cggcagtctt tttacgaatt
     5461 atattattag cgataatgtg cattgcctca tcagctttat tgtatttaaa aggtagatca
     5521 tcaacagata aaacaaa
//
LOCUS       DANLXK010000142         5530 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.143, whole genome shotgun sequence.
ACCESSION   DANLXK010000142 DANLXK010000000
VERSION     DANLXK010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5530
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(105..335)
                     /locus_tag="PXD88_002300"
     CDS             complement(105..335)
                     /locus_tag="PXD88_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281832.1"
                     /translation="MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGIHAVETYDNE"
     gene            complement(456..773)
                     /locus_tag="PXD88_002301"
     CDS             complement(456..773)
                     /locus_tag="PXD88_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6281833.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            complement(766..924)
                     /locus_tag="PXD88_002302"
     CDS             complement(766..924)
                     /locus_tag="PXD88_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281834.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            complement(978..1133)
                     /locus_tag="PXD88_002303"
     CDS             complement(978..1133)
                     /locus_tag="PXD88_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281835.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            complement(1271..1528)
                     /locus_tag="PXD88_002304"
     CDS             complement(1271..1528)
                     /locus_tag="PXD88_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281836.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            1542..1718
                     /locus_tag="PXD88_002305"
     CDS             1542..1718
                     /locus_tag="PXD88_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281837.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            1722..1868
                     /locus_tag="PXD88_002306"
     CDS             1722..1868
                     /locus_tag="PXD88_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281838.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            1884..2090
                     /locus_tag="PXD88_002307"
     CDS             1884..2090
                     /locus_tag="PXD88_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281839.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            2087..2863
                     /locus_tag="PXD88_002308"
     CDS             2087..2863
                     /locus_tag="PXD88_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281840.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            2978..3390
                     /locus_tag="PXD88_002309"
                     /pseudo
     CDS             2978..3390
                     /locus_tag="PXD88_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            3404..3559
                     /locus_tag="PXD88_002310"
     CDS             3404..3559
                     /locus_tag="PXD88_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281841.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            3639..4613
                     /locus_tag="PXD88_002311"
     CDS             3639..4613
                     /locus_tag="PXD88_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL6281842.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            4700..4897
                     /locus_tag="PXD88_002312"
     CDS             4700..4897
                     /locus_tag="PXD88_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281843.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
     gene            4974..5216
                     /locus_tag="PXD88_002313"
     CDS             4974..5216
                     /locus_tag="PXD88_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281844.1"
                     /translation="MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDL
                     CIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD"
     gene            complement(5376..>5530)
                     /locus_tag="PXD88_002314"
     CDS             complement(5376..>5530)
                     /locus_tag="PXD88_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281845.1"
                     /translation="KAYGWCAEQEDANTECPTALIVSLSNEIFEATGGDDISGAEKWE
                     KYNSNF"
BASE COUNT         1656 a          982 c         1138 g         1754 t
ORIGIN      
        1 gtggtggtag taagaatgtt cagcaatcta cgcaaaaatc cacagataaa gtagctagat
       61 aattaggaaa atataaaaaa tagcggtgac atagttaccg ctatttattc attatcatag
      121 gtttctactg catgaatacc acaaccataa tggtcagcaa agtaagtaga acgcttttga
      181 ggcttaaggg agaacccatt catctcagct ctcatttcag cagcattttt caaggcaaca
      241 tttaaattgt ttgaagactg gcgttgagct tcatttttag ctcgcacttc attaaaaata
      301 gagataaacg tttgtgcttt tttaagtaga gacattgtgg ttctcctgtt ttttgcacct
      361 aatattattg aactatggta ggcttggcga gcattgcctt gagttttaat tcggctacgg
      421 tcatttttct ttttatttcc attttatagc tcctgttatg ctttgaatgc agagcgataa
      481 tagtcggttg ggtattgttg acgacaatgg ataatggcta aaatttgcac ttgattttct
      541 gtttctcgat atataattct ataacctcgg caaaagcatt ctctagtatt ttctactgaa
      601 cctataacac caattcgtgg aaaataagaa agattatcca aagtgttatg aatttccgca
      661 gataatttat caccactttc atagctataa gtatattcca caacattacg aatgatttgt
      721 tgtaaattca tacttgctct gcgagtcatt aacacctctt ttcgactaag catacacggc
      781 tccctgtagc tcttgcaagg tttcatatat ggttttttga cacagttgac ggctttcttc
      841 taatgaaata acacgtccgt tttctatatc atcaagtcct tgttttactt gctctattaa
      901 gaagttttgg tattcttctg tcatggataa ctcctatcat tagttgtata tagatatatt
      961 agcaatgtta caaattgtta atcgtccagt tcttgagcag tttcttcaat agttgattga
     1021 actaacaatg tggcttgctc aagaggaata ccttttccgg attctaattc agctctgcct
     1081 tttgcaattt tttgagtaag gaactcatcg tagccttttt ctttaaatag cattttatgt
     1141 tcctttcact tattacaagg ctttcaggca tagggattat gttctcctaa atgcgaaata
     1201 ttggaataat ttacgcttaa agcaatagag tgtcaagagc agggtttttg gaagtgtggt
     1261 ttgggaatat ttaaaaatta tcatcataag tttcatcgta gttatcgttt tcatcgctgg
     1321 catcattttc atcggaatat tcttcttcgc tatattcctc ttcgttatat ccatcatcaa
     1381 gttcaggttc ttgttccctt agtgattctt tagcttcaac ttcaggcata aattgctggt
     1441 aattgtagaa aaaagtgcca tcgctgcctt tttcccaaag tccggcgtag ttgtatttta
     1501 catattcagg atcagcgtgg catatcatcc ctaattgagg ggtggcatat gttcgtattt
     1561 accaaggtga ggcttatggt tggtgtgctg aaaaaggaga ggcaaataca gaatgccctg
     1621 aggccttatt ggtgagttta accggcgata tttttgaagc agtcggcgga gataagctga
     1681 aaggtgccaa aaaatggcag ccttacaaga aagaatgaca gatggatacg acacaaaaac
     1741 gtgtggcttt attcatcatt ggattatctg ttgtgatgtg gctaagaaag cataactgct
     1801 gtacagtgat atttgtattg ttgttggcag cgttagcatt tagctacacg atggaacatt
     1861 tatattagct ggggaactga attatggtaa agaatgtggt tcatgaagag atattacata
     1921 accgtgcaga attacagcaa gcggttgaaa aagaagaatt ttgtgcaaaa tgtgataact
     1981 cagtagtatt ccatttacgt gataattatc acgaatttac gcttgggtta gatactatat
     2041 tgcagtgtct gcattttgct gaagagaagg gagctatccg gataccttga atattgagta
     2101 ttcactcaat cattgccaag gagatggagt cgcattttat ggtcgacttg gtacagatga
     2161 tctaatccag cttttcaatc atctcaatcc acagaaacgt aaacagaaaa tgtttgctaa
     2221 tttgctaacg cacattgagt cttgggaaac ccacgatgat attggttttg aaattatacg
     2281 aaatcgcttt gggtatcgtt actcgcattg gaatacgatg gagctttatg ctaaaactgc
     2341 agatcagtta gtgtttttca atgatagtga tgctcgaaga aactggtatt ttccgacttc
     2401 aaaagtgtat aaatacaaag gcttgtggga tgagtttatt caggatttag aacagtatat
     2461 taagggtact tcccgtgaaa tggaatcggt cggttatcaa attattgaag cctcgccgta
     2521 tcaaacggaa accgttttca aatttaatac ggaaaactat ctagtagaac tgaaacgtaa
     2581 accttctgag ttttattcag agcttgttga ttgggcattt ggtgatatgt gtgattttga
     2641 agcaactata gagcagattt gtcaagggca actctgttat gctgattttg aagcaactgt
     2701 taccgataag aaaagtgaaa ttcagttagg tcttgctcgc ttgagtggaa taagttactc
     2761 gccgaatgac cgttcgttta gtggttatcg acaagagctt attggtgagg cgattgcctc
     2821 tgctcgccat aatgcagcac gttttgccta cttgcacgcc taatttgcag atttgtactt
     2881 caatttgacc gcttgtagtg gttaattttc accccgtggg gaaatatttt ccctattggg
     2941 caagatgttt ctccactttt taatttggag aaatgtgatg aaaaatgaac acaatttaga
     3001 gcaacttaaa tatatttggg ataaccgcaa ccttgaaaat aaagcctatc aatacctgtt
     3061 tcacatttgc attgagccga tgaaaaaagg agattggaat cgttatacga tttggcttaa
     3121 ttttcacggc aacttaatca acgtgtcaga cgttgtatat cgagttgtgg aatctcaaaa
     3181 gctcaaggat gacatcaaaa tgtggtatga caataatacc attgtcgtcc gataaaagtt
     3241 gaaacaacag gcttcatctc atatttactg caccagttct atcaggggat agcctatatt
     3301 ttactggaac agggaatgat tactgaaact gaagcagccg agaaaagtta taacttcaga
     3361 gctgcaaatt gttttcaacg tttgctttaa tggaggtgag ataatggaaa ctcgcattgt
     3421 taaagttatt tacgatgatg gtgattattt ctttacccga atcaatgctg atgaacaggc
     3481 tatccgtaat tactacgcca taggcagttc aataggtttt gatgatataa gaaaaattat
     3541 cgctgttgaa attttataaa ccacccatag gggaaactat ttccccatag ggtgatagcg
     3601 tttccccatt tttctacccg aactttggag aaacacttat gaacactcaa cctaaatttg
     3661 atttatacca acacatcact gaccgaattg ttgtagcact ggaacaaggt acagccccgt
     3721 ggttaaaacc gtggagccat ccggaatgca atatggcatt acctcgcaat gcggtatcta
     3781 accgcttgta ttccggtatc aatacactct tactctggat tgctactgct gaacatggtt
     3841 acaaacagtg caagtggatt acagcaaaaa aagccaatga actcggcgga tatatccgta
     3901 aaggggaaaa agctactgtg gtgatgaact accgtcctga tgagagagag aaactcgatg
     3961 aggaagggaa tattgtgtat gacgaggaag gaaatccgga aatggaacga cactttttca
     4021 ttaataagca caatctgttc aatctggacc agtgtgaaaa tttaccggtg gaactgtacg
     4081 atcctgtatc agaaccgaaa caacctaaat ctgagccaaa ccaatacgat atttttgctg
     4141 agattcggca gattatcaaa ggaatggatt tgcaggtgga aatgaagcct agcaatcggg
     4201 cattttatca accaggtgaa gataaggtcg taatgccgga gatgaagcag tttgcaaatg
     4261 ctcaagcgtt tcatagtgta ttgttacacg aaatgactca cgcaacgggg gcaaataatc
     4321 ggcttaatcg ggaaggtatt acttccggaa aggctaaatt tggaaacaaa gtctatgctt
     4381 ttgaggagtt gattgctgaa atgggcggtg catttttatg tgcctacctt ggttttgata
     4441 ctgtgcctca aaatgcggcg tatattgaaa gttggattcg agtattgaaa gaagataaac
     4501 gggcgattgt ccgtgcttcc ggaaaagctc gtgaagcctg ccaatacatg ttagacgcat
     4561 taaacgtcgc acagttggct gacaaatacg atgtatttga agaagctgct taacaaattt
     4621 gccgaaaggc atatctcaag gggagaccta tccctttggg catagtgttt ccctattttt
     4681 tattaaatgg agaaaagcta tgacaaaatc aactgaaata cctcgtggac atgataactg
     4741 ggttattaca ggcagagaca atgatgggaa atggcataaa gaacgttttc tttattattc
     4801 tcgccgtgaa gccatccaac agtttcgtcg aaaacacaac tgcgtaggta aacatagtgt
     4861 tattgaatca ataacacctc aatttggctg gtattaaccg gctttcccgt ggggagatac
     4921 tctcccttcg gagcattgtg tctccctttt tattcactta actagaggac acaatgttca
     4981 atctaaactt atttaaacgc cctattgagc tttcaacgct tgaatcttgg tctaaattct
     5041 gtgatgatgt cggtaaagtt gcatttattg cgatacctcc gatgatttat agtaattatg
     5101 atctatgtat caaaatagga aacataagtg ctttattggc aattacctat ggattcttat
     5161 tatcaggcag gactatccgt caatttattg agaaggagaa atcaagatgg gattaacaat
     5221 cggcttatgg atcattgctt ttataggctt tgcactggtt ttttgggcaa atagcttact
     5281 caaagagcaa gatgaacgcc ttaaacagct aaaaaaatag ctcaacttta cactcaatac
     5341 ggcacatttg gtgccgtatt tcattcttat cctaattaaa aattagaatt atatttttcc
     5401 catttttcag ccccacttat atcatcacct ccagttgcct caaaaatttc attagataag
     5461 ctgacaatta aggcggtagg gcattccgtg tttgcatctt cttgctctgc acaccagcca
     5521 taggcttttc
//
LOCUS       DANLXK010000143         5499 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.144, whole genome shotgun sequence.
ACCESSION   DANLXK010000143 DANLXK010000000
VERSION     DANLXK010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5499
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            122..2689
                     /gene="clpB"
                     /locus_tag="PXD88_002315"
     CDS             122..2689
                     /gene="clpB"
                     /locus_tag="PXD88_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL6281846.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            2903..4045
                     /locus_tag="PXD88_002316"
     CDS             2903..4045
                     /locus_tag="PXD88_002316"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL6281847.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(4102..5493)
                     /locus_tag="PXD88_002317"
     CDS             complement(4102..5493)
                     /locus_tag="PXD88_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL6281848.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
BASE COUNT         1793 a         1116 c         1177 g         1413 t
ORIGIN      
        1 ttatttttgt gatctttttc acatttttac ttgaaaattg tttaccaagc tccatttagt
       61 gtttcaacaa gagatgtaaa taaaaattta cactttctaa actcattgta aggagaaaga
      121 aatgaatttt gaaaaaatga ccacaaaact gcaagaagcc ttggctgaat cacagtcgct
      181 tgcggtagga aaagataatc cgtacatcga accggcacat ttgctctatg cgttgttaaa
      241 acaagaaggt ggctcgattg cttctttgtt taccacatta aatgttgatg taccgacttt
      301 aattcgtgaa ttacaacaaa ttttagaccg cttgccgaaa gttcaaggcg gtaacaccca
      361 agtttcacaa cagttggtca gactgttaaa tcaatcagac aaactggcac aacaattcgg
      421 cgacagcttt atttcatcag aactatttgt tctagctgca cttgatgaca atggcgattt
      481 ggggaaacta tttaaacaat ttggcttaaa caaggaaaaa ctaacacaag ccatcagcca
      541 aattcgagga ggagacacag tgaataatca aaatgcggaa gatacccgcc aagcactcaa
      601 aaaatatacg attgatttaa ccgaaagagc caaagccggt aaattagacc cggttatcgg
      661 gcgtgatgaa gaaattcgcc gtgcggtgca agtcttacaa cgccgtacca aaaacaaccc
      721 tgtgttaatt ggtgaaccgg gtgtggggaa aacggcgatt gtagaaggct tggcacagcg
      781 tattgtaaac ggcgaagtgc cggaaggctt gaaaaataag cgtgtacttt cgctggatat
      841 gggagcatta attgccggtg cgaaatatcg tggtgaattt gaagagcgtt taaaagcggt
      901 tttaaacgac ctggcgaaag aagaagggca agttatcctc tttattgatg aaattcacac
      961 gatggttgga gcaggcaaaa cagacggagc aatggacgcc ggcaacttat taaaaccaag
     1021 ccttgcccgt ggtgaattgc actgtgtggg ggctacaacc cttgatgaat atcgccaata
     1081 cattgaaaaa gacgcagccc ttgaacgccg tttccaaaaa gtattggtgg acgaaccaac
     1141 ggttgaagat acgattgcga ttttacgtgg tttgaaagag cgttatgaaa tccatcatca
     1201 cgttcaaatt acagaccctg ccatcgtggc ggcggcaacg ctttcgcacc gttatgtgtc
     1261 tgaccgtcaa ttgccggata aagcgattga cttgattgat gaagccgctt caagcctgcg
     1321 tatggagatt gattctaaac ctgagccgtt ggataaatta gaacgccgca ttatccaact
     1381 caaattggaa cgccaagcgt tacaaaaaga ggaagatgaa gcgagccgtc agcgtttagc
     1441 caaattagac gaagaaatgg cagcgaaaga gcgtgaatat tccgagctgg aagaaatctg
     1501 gaaagcggaa aaatccgcct tacttggtac acagcatatt aaatcggagt tggaaaatgc
     1561 ccgaattgcg atggatcagg ctcgccgtga aaacgatttc gagaagatgt cggaattgca
     1621 atatggcgtg attccaaact tggaaaaaca gttacaagcg gtcgaaaatg gcgaaaaaaa
     1681 tgcagatgct cagctcctcc gtactaaagt caccgaagag gaaattgcgg aagtgctttc
     1741 aaaagcaacg ggcattcctg ttgcaaaaat gatggaaggc gagaaggaaa aactccttcg
     1801 tatggaagaa gtattacacg ctcgggttat cgggcaaaat gaagccgttg atgcggtggc
     1861 aaatgcgatt cgccgtagcc gtgccggact ttccgatccg aataaaccga ttggttcatt
     1921 cctattctta ggaccgaccg gcgtgggtaa aaccgagtta agcaaaacct tagctaattt
     1981 cttgtttgac gatcctgatg ctatggtgcg aattgatatg tctgaattta tggaaaaaca
     2041 cagcgtatcc cgcttagtgg gcgcacctcc gggctatgtc ggctacgaag aaggcggcta
     2101 tttgaccgaa gcggttcgcc gccatccata ttcggtagtg ttacttgatg aagtggaaaa
     2161 agctcaccct gatgtgttta acattttatt gcaagtgtta gatgacgggc gtttaaccga
     2221 cgggcaaggc agaacagtcg atttccgcaa tacggtagtg attatgacct caaacttagg
     2281 ctcgcattta attcgagaaa atgcgtataa aggctatgat gtggttaaag aaatggtgat
     2341 ggaagtcgtc ggacagcact tccgccctga atttatcaac cgtattgatg aaacggtgat
     2401 gttccactca cttggtcaag agcatatccg ttcgattgcg aagattcagc tacaacgctt
     2461 aatccaacgc ttggcagaac gaggctatga ggtgacagta accgatgcag cattagatca
     2521 tatcggcaag gctggtttcg atccgctgtt cggagcaaga ccactgaaac gtgcgattca
     2581 acaagagctt gaaaatccgc ttgctcaaca gatcttaagc ggtaaattat taccgaataa
     2641 agccgttacg gtggattacc aaaacgggca gattgttgca acacaataat gtctccgatg
     2701 gtgcgagcgt cctcgctcgt accttacaag cggtggattt atcgtaaaaa tttgcaaaaa
     2761 attgctcgaa aataaccgct tgcacagtaa aaattttcat attgcccttc attaattttc
     2821 ataagctaat gaagggcttt ttattactct ttttgctatc attaacggcg tttataacca
     2881 atacaattac aaggagtaat ttatgagcca attatttccg gaagcaacaa tccgcactca
     2941 agccccgtat cgtaatgata ttgtaggcag ctttctacgt accgatgcgt taaaaaaagc
     3001 cagagaagat ttcaatcagc aaaaaatcac ccgtgacgaa ttgcgtgaag tcacacgcca
     3061 agaggtcaaa aaattagttg agttgcaaaa gcaacacggt gtaaaagcag tctctgacgg
     3121 tgaatttagc cggacttggt ggcatttaga tttcttagct gaacttgatg gaatggattg
     3181 gcaagaaacc gaagtcttta acgtgaactt taccggtcat aaacccaaag ggcaaacggt
     3241 aaaaatcgtg ggcgatattg atttctccga aagccaccct tttgtggacg cttatcgtct
     3301 tttaaaagaa gctgccggcg attacccaac caaattcacg attccggcac cgacaatgtt
     3361 acatattatc tgctgtgtgc gtgcggaaga ttaccaaccg ttaccacaat atcaagacga
     3421 acaaaaactg tacgatgata ttgctaatgc ttatatcaaa gcaatgcaca aattctacga
     3481 tatggggcta cgtaacttac aattagacga caccagttgg ggacaattct gtgccgaaga
     3541 taaacggaaa gagtttgcag ccagaggatt taatttaact gatttagcgg aaaaatatgt
     3601 cgcattatta aaccgtattg ttgatgcaaa accggcggat atgtcaatta cgatgcacat
     3661 ctgccgtggt aacttccgtt cttcttggtt ctcggaaggc ggttatggac cggttgccga
     3721 agtattattc ggtaaatgcc gtgttgacgg cttcttctta gaatacgata ccgaacgtgc
     3781 aggcactttc gagccactac gccacattaa agatcaacaa gtggtactag gcttaattac
     3841 ctctaaattt ggcgatttag aagataaaaa tgtgatcatt gagcgtatta aagaagcggc
     3901 tcaaattgtg ccaatcaatc agctatgctt atcaccacaa tgcggctttg cctccaccga
     3961 agaaggcaat attttaaccg aagccgcaca atgggcgaaa ctaaacttaa ttaaagaaat
     4021 tgcggaagaa gtttggggta gctaatcctc tataatacaa atagccgagt aaatactcgg
     4081 ctattttagt ttgttttaac attacaacca gaagagatac ccaacagtcg caatcacaaa
     4141 gatagagata atatttagcc agaaaccaac tttaatcatc tcactttgtt taatttgccc
     4201 tgtaccaaat acaatcgcat tcggtggggt ggcaaccggc aacataaagg cgcaagatgc
     4261 tcctagacca ataattaagg ctaatccgac cggtggcata tttaatgctt gtgctataga
     4321 gatgaaaatc ggcactaaca aagccgcact ggctgtgtta gaggtaacct cagttaggaa
     4381 aataataaat gctgccacaa ttaaaccaat taggtaaaaa tgcccccctt caattagtga
     4441 gacgacccca tcagccataa ttttgctcgc accagtttgt cctaatacag cacttaacgt
     4501 caaaccacca ccaaatagga ataatacccc ccactcggtg ttttcttgaa tctgttgcca
     4561 atttgcgaca cgagtaatgc aaataagtgc tgcggcaatc aatgcaagaa tggtgtcaaa
     4621 gctcgcaatt ttgccattaa ttcccagaaa tgcagaaata atagggttaa ttttatcacc
     4681 aaaaatccaa ccaagcgcaa taaagacgaa aatagccaag gtgataatac gagaacgatt
     4741 taattcaatt ttctcaaatg atcgatcaaa actaactgaa aaatttggtt taaatacgat
     4801 atatagtgtt gcaatcatta atgggaataa aattagcata attggcaaac catattttaa
     4861 ccaatcagca aaagtcagat tcaattgaga agcaacaatc gcattcggtg ggcttcccac
     4921 taaagtaccc attccaccaa tactggcact ataagcaatt cctaataaca cgaaaagata
     4981 agtattatgg ttttgtttct gatcaagttt acttaaaatc cccattgcca aaggtaacat
     5041 cattgcagct gtagctgtat tactcatcca cattgacaaa aacgctgtta ccgcaaataa
     5101 ataaataact gcaatcgata atttaccttt agctaatgcc ataattttat tggcaatcat
     5161 acgatctagc tgctgaatgt gtaatgctgt cgctaaggca aagcctccaa aaaataagaa
     5221 aatcgttgga tcagcaaaag caacaagagc ttcttttgat ttaaccagcc ccagtgctac
     5281 agccaaaatc ggaattaata atgccgtaac cgtaacgtgt aatgcttctg ttagccataa
     5341 gacggcaatg aaaattaaca atgccaaccc cttattggct tcaggggtaa aaggcaaggt
     5401 atttaacaaa ataataaata aaatagcatc tgcaacaaaa atcaagctat tgcgtgtatt
     5461 tttactcggt tcaataagag gagtattttc cataaaaac
//
LOCUS       DANLXK010000144         5485 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.145, whole genome shotgun sequence.
ACCESSION   DANLXK010000144 DANLXK010000000
VERSION     DANLXK010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5485
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            2..520
                     /gene="hutZ"
                     /locus_tag="PXD88_002318"
     CDS             2..520
                     /gene="hutZ"
                     /locus_tag="PXD88_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL6281849.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            670..3282
                     /gene="pepN"
                     /locus_tag="PXD88_002319"
     CDS             670..3282
                     /gene="pepN"
                     /locus_tag="PXD88_002319"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL6281850.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(3342..3614)
                     /locus_tag="PXD88_002320"
     CDS             complement(3342..3614)
                     /locus_tag="PXD88_002320"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL6281851.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(3668..5302)
                     /locus_tag="PXD88_002321"
     CDS             complement(3668..5302)
                     /locus_tag="PXD88_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL6281852.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
BASE COUNT         1604 a         1178 c         1091 g         1612 t
ORIGIN      
        1 tatgacaacc aaccgtcaag aggtcttaca aaaccgttta ggtccagaaa ttgaagaatt
       61 aaaacaacaa atcaaaacta taatgcttgc aaccatagat aaagatggtg taccgaatgt
      121 gagctatgcc ccttttgtaa ttaataacgg cgaatatcaa gtcttaatca ctactattgc
      181 ccgtcacgct cgtaatttac aagaggtgcc aaaagtctct ttaatgctaa ttgaggatga
      241 aagtaagagc cgtcaaattt ttgcccgtcg tcgcttaacc tttgacgcaa cagtgcgaat
      301 gattgaacgt actgatgagg aatggaataa tagcattgca gcacttaaag ctcgtcacgg
      361 cgatttagtt gatgaactgt caaatatgca agatttcaag ctctttagct ttaagccaac
      421 ggcaggctta tttgtaaaag gatttggtaa agcctttgat gttggtgttg atgacttaat
      481 taatgtcgtt catttagacc aaggccacca aactgcctaa ttgcgaaata aactcacggc
      541 tataaataat cctatttata gccgttttta ttgcgacaag cggtcaaatt ttttggaaaa
      601 tttaccgcta ttttagtaca ataacgacac tattctatga gctaaacgca actaaaaaaa
      661 ggaaatccta tgcaacctaa agcgaaactc agaaaagatt atcgagctcc cgatttcact
      721 attactgata tttatcttga cttccaactt gacccagatc gcacttttgt cacctcaaaa
      781 ctaactgtcg tgcgtaaaaa tcctgaggcg acaacacttc gtttagacgg tcatagtttc
      841 gatttccttt cgcttaaata taacggcgag ccgttttccg cctttcaaaa agatgatgaa
      901 tctttaacct taaatttagc cgatgtgcct gccgagcggt tcgagcttga aattgaaacc
      961 gcattaaatc cggcacaaaa cacctcgtta caaggtttgt ataaatcggg cgacgggttt
     1021 tgcacccagt gtgaggctga aggtttccgc cagattacct atatgctcga ccgccctgat
     1081 gtacttgcaa aatatacgac aaaaatcacc gctagtaaga gcaaataccc gtatctgctt
     1141 tctaacggca accacattgc ccaaggcgac ttgcacgatg gcagacactg ggtggaatgg
     1201 caagatccgt tctttaaacc aagctattta tttgccttgg ttgcggggga ttttgactta
     1261 ctccaagata aattcatcac caaaagcgga cgtgaagtca cgcttgaaat ttatgtcgat
     1321 cgtggaaatt tagaccgtgc accttgggcg atggagagct taaaacgttc aatgaaatgg
     1381 gatgaagagc gtttcggttt ggaatacgat ttagatattt atatgattgt tgccgttgat
     1441 ttcttcaata tgggagcaat ggaaaacaaa gggttaaata ttttcaattc caaatttgta
     1501 ttggcaaaac cggaaaccgc aaccgatacg gattatttag atattgaagc ggtgattgcc
     1561 cacgaatact tccataattg gacgggcaac cgcattacct gccgtgattg gttccaacta
     1621 agcttaaaag agggcttaac cgtcttccgt gatcaggaat ttacctccga tttatggtct
     1681 cgttcggcaa aacggattga agatgtgcgt ttactgcgta ccgtacaatt tgccgaagat
     1741 gccagcccga tggctcaccc gattcgcccg gaaaaagtga ttgaaatgaa taatttctac
     1801 accgtgactg tgtatgaaaa aggggcggaa attattcgta tgattcacac cctgttaggc
     1861 gaagaaaaat tccagcaagg tatgcaactt tatgtggcaa gacacgatgg ttctgcggca
     1921 acttgtgaag atttcgttaa agcaatggaa gatgcttcag gcgttaatct tgaacaattc
     1981 cgccgttggt atagccaatc cggcacgcct gagctcacca tttccgatga atatgatgaa
     2041 acccgcaagg cataccgctt gcatatttca caaatgacac cggcaaccca cgatcagatg
     2101 gataaactca atctgcatat tccgcttaaa gtagcgttat atggtgaaca ggacggtaaa
     2161 cgcattccgt tacaatatga attattgacc gtaagcgatg tgttagatgt aaccgcagaa
     2221 caccaaacct ttgagtttca taatgtaaca caacgcccgg tgcctgcatt actgtgtgat
     2281 ttctctgcac cggtacggtt agattacaac tataccaccg agcagctttt aaccttactc
     2341 aaacacgctg aaaatgattt tgtacgctgg gatgcagctc aaatgctcta taccaatgaa
     2401 ctgcgtgaaa atttaagccg ttatcagcaa catcaaccac tcagcttctc agaagggttg
     2461 gtgaatgccc taacgttcgt gttggataac tcagcaagcc tgccggaact aactgcatta
     2521 accctcacat tgccaaaaga aaccgagttt gcagaatcgt tcaaaaccat tgacccacaa
     2581 ggtattgcgg ttgtgcgtga atttatgcag cattccattg ctcacgcctt gcaagataag
     2641 ttattagcgg tatatcacca aaaccaatgc ggggaatatc aagtcgtggc tgaagatatt
     2701 gctaaacgag ccttgcgtaa tgcttgctta agctatttag cctttactga tttaggcaac
     2761 gcgttggtgc ataagcatta caataatgcc gataatatga ctgatacgct tgctgcatta
     2821 caagccgcaa ccaaagccca gctaagttgc cgtgatgcat tattagccga ttttgagcaa
     2881 aaatggaaac atgatggttt agtgatggat aaatggttta tgctacaagc cacccgaccg
     2941 gacgacgatg tgttatccat cgtgcaaaat ttaatggaac acccaagttt taactttaat
     3001 aacccgaacc gtttacgttc attagtaggt gcattctgcg gtcaaaaccc gaaagccttc
     3061 cacgccattg acggttcagg ctatcgtttc ttggtagata cgctgattaa acttaacgaa
     3121 agtaacccac aagttgctgc tcgacttatt gagccgttaa ttaaactctc acgctacgat
     3181 aaccaacgcc aaaccttgat gcgtcgtggt ctagaacgcc tgcgtgagct ggataattta
     3241 gcacgagatc tgtttgagaa aattgaaaaa gcgttagatt aaaccaagca atacaagcgg
     3301 tgtcgtttgc aaattttttt acaaatgaca ccgcttgtta gttaatacct tacctcaaac
     3361 cttttaaacc tttctgagcc aagataatcg ctcacaatta cccgttccac ctttgcagca
     3421 ggtgagcctt gttgtaacca attttccagt tgagcgattg tctgttcatc cgcttcagct
     3481 accacttcta ccgagccgtc atcacgattt ctgacatagc cttttatgcc taatcgattc
     3541 gcttcctgca aggtaaaaaa ccgaaaagcg acaccttgaa cccgtccgta aaccgagaat
     3601 aattttgcga ccattcttcc cccataaaaa taggctgctt atttttcaat aaacagccca
     3661 taatgtctta tttcacgatg tagaggttac gcagtaaaat atcatcttgc ggatctttac
     3721 cctcatagcc tttcacgtaa ggtttcacca aacgtgggtt tacatagtta taaatcggaa
     3781 taatcgcata atctttggct aactgctcct ctgcttttgc ataagcagct gcacgaccag
     3841 ctgcgtctgt cgctttgtaa gattctgcta ccgcatcatc ataagcttgg ctcttataaa
     3901 acgcagtatt gttgctggag ttcgataaga aatagttcac aaaggtggtt gcttggttat
     3961 agtctgccga ccaacctgca cgagaaacat cataatttgc attgcggcgg gtatctaaga
     4021 atgttttcca ctcttggttt tctaatttca catcaacaat gccgtctgtg ccttgtttcc
     4081 ataatgatga aactgcaatc gcaattttct tgtggttgtc gttggtatta taaagaatag
     4141 taaattttaa cgggttcgct ttactgtaac cggcttcttc caataatttc aacgctttgg
     4201 cttttctatc tgccattgaa tctttggaat aagcaggttg ctggattttt tcaccctcgt
     4261 gaatataagg cggtgtaaat acataagttg gtgtttgacc ttgtcctagc actttatcgg
     4321 taataatggt gcgatctaaa gctaagttta acgcctcacg cactttcaca ttatcaaacg
     4381 gtgctcgttt atggttaatt tcatagtaat aagtagaaag ggttcttgcc gtaaacactt
     4441 cgtttggaat ctcttttttc aaggttgcaa actgctccgg tggaagagca tagttggtca
     4501 tatccaaatc accggcacgg taacgtgaaa catcagttgc ggcattagca atggctaaga
     4561 aagtcgcttt attaatcacg gtttctttat cattccaata atttttatta cgctcaaaca
     4621 cgattttttc attaataacg tgatcggcta aggtataagc cccgtttcca accagattgc
     4681 ctttttgcac ccacgcatcg ccgtgtttct caacggttgc tttgtgtaca ggtaataaag
     4741 aagagtgtgt tgccagctca actgcatacg ggacaggttg gcttaactgc acctggaaag
     4801 tatgatcatc aatcgcttta actgctagtt cctccggttt tttcttgccg tcaataatat
     4861 cttgagcatt ttctacattg agataagtta aatagcttga ataaggtgaa gccgtaagtg
     4921 gattaaccaa acgctgccaa gcaaatacga aatcgtgagc agttacggca tcaccgtttg
     4981 accatttagc gtcttggcgt aatttgaacg tccacgtttt gtaatccggt gtattttccc
     5041 aactttctgc cacacccggc tgaatattgc cgtcagaatc tttcgttacc aatccttcaa
     5101 ataactgata agcaacttgc gattccggca cgccctcaat tttatgtgga tcaaaacttg
     5161 atggctcaaa accattatta atcgtaattt cttgtttttc tgcaagcgtt gttccttcag
     5221 gcactttggc tgcaaacaca tttgccgata agcctaacac taatgaggtt gttaataagg
     5281 aaagcgagaa ttttgactgc atatttgatc tccattgatg aatattggct tgcaaccagc
     5341 cgatttgttc taattaattt ttttaagtct aggcattatt attttgattg caaggaattt
     5401 ttttaaaaaa tgtgatagat atcacctttc aatgcaaaaa ttgcataaaa aaatcccgaa
     5461 gaaaatagct ctataaactc tgata
//
LOCUS       DANLXK010000145         5469 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.146, whole genome shotgun sequence.
ACCESSION   DANLXK010000145 DANLXK010000000
VERSION     DANLXK010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5469
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            389..1393
                     /locus_tag="PXD88_002322"
     CDS             389..1393
                     /locus_tag="PXD88_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL6281853.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
     gene            1448..3298
                     /locus_tag="PXD88_002323"
     CDS             1448..3298
                     /locus_tag="PXD88_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6281854.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(3394..3948)
                     /locus_tag="PXD88_002324"
     CDS             complement(3394..3948)
                     /locus_tag="PXD88_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL6281855.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(4015..5466)
                     /locus_tag="PXD88_002325"
     CDS             complement(4015..5466)
                     /locus_tag="PXD88_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL6281856.1"
                     /translation="MASLVAFSSAGASAAAFQLAEISTSGLGRAYAGNAAVADNASVV
                     ATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTAIVPNAYIVSP
                     INERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYDLGYGFVLGAG
                     LNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAGIAAGNTALEA
                     QKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLKGDKWALGWNV
                     GLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAEIDGTLRLRLP
                     AFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTENFNDSQRIALG
                     LSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTPNLSADVGYSH
                     LRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
BASE COUNT         1719 a          995 c         1170 g         1585 t
ORIGIN      
        1 caatgatcat gcaaaaatga accaggcaga cgcgatgaga tgatcgactt catcttttga
       61 taaactcttt gcgatttaaa cagaaaatat atttagaatg taaacaaaca tgagtcgatt
      121 ttatgttcaa agagctgtaa taagacggaa taatgtcaga ccaagataga tactttcaag
      181 taaaatcaag cataaaaatg attttcagac tttacaaatc tgaaagaatg tgtaagatca
      241 ggattgtccg aaattcggat ggaaaatccc agtggatgta ttggctggat acatcataat
      301 aactatgtat ttgtgaatgt tatttgaatg attctacgta gttgattcaa aatcagcagt
      361 gcggtatctg catgctaatg atgaaaaaat gccgggcgat gcaaataaaa ttatctctaa
      421 cggcaccagt gccggaggag cattatctac tttgttagga gcttcagctg atcattacga
      481 ctatgagcct tatttgaaag aggcgggggc attgaatgcc agtgacaaaa tttttgcagt
      541 ttctgcctat tgcccaatta ccaaccttga aaatgcggat atggcgtatg aatggcaatt
      601 taatggtgtc aatgaatata gccgaatcga tatgagtcga ttaaatgcag cagagtttaa
      661 cgaccgctca aaaccaaaac caaagccgaa aattgaaggc tcgttaaatg aggcggaaat
      721 taaagtttct aatgaattag cagaacgctt tccgacttat ttgaacagtt tgcatttggt
      781 tgatgagaaa ggcaatcctt taacacttga tccaaaaggc aacggctcgt ttaaagatta
      841 tttatctgaa gtggtaaaaa cggctgcaaa taaagcctat agaggtttag ttcaagatag
      901 cgaagagcaa aaagcctttc aacaaattag ttggctttca tttgagaaag gcaaagtcag
      961 cagtgtggac tggtttggtt atgtgttttc agataaacgg atgaaatcac cacctgcatt
     1021 tgatgcgtta aatggaagtt cgggcgagaa taatttattt ggcacagaca cggaaaataa
     1081 ccgccatttt acgctttata gtgcggaacg ttctgccaat aaagatctca atttagccga
     1141 tccgcaaatc gtgaaacgga tgaacccgat gcactatttg gataacccaa atgctgcgga
     1201 acattggcgg attagggtgg gaacggcaga tagagatacc tcgctggcaa tttctgcaat
     1261 cttagcaata aaactgcaaa tggcaggcaa aaatgttaat tatgaaaccc cgtggaatgt
     1321 accccattca ggtgattatg atgtaaatga attattccta tgggctgatg agctagtcaa
     1381 aggcaaaaag taaaaaatag agtaaaataa agcagatctg atggtctgct ttttgttttg
     1441 aggtcgtatg caagttaaaa aatttagcca aaaatatatt aattgggtat taaagctagg
     1501 gcggttaaaa gcttctcttt taggcttttt tatggtcgct ctttcggcaa ttttaattca
     1561 aagtagctta acctatcttt ttattgggcg agtagtcgtg gtggatattt tacgctccat
     1621 cgcttttggt ttaatttctg cgccttttgt gctttatttc ttcacgttat tggtggaaaa
     1681 acttgaaata tctcgcttga aattagaaaa agcagtaaga gatttggaag aactccggga
     1741 acaagatgcc tatcttaacg ctaaattaga aaaaaacagc cgtgataaaa gcattttaat
     1801 ggcgaccatt agtcacgaac ttcgtactcc ccttaatgga attatcggct tgagccaaat
     1861 tttgttagat gataaaacca ccgaaaaaca gcaagaatat ctaaaaacta tcaatatgag
     1921 tgccactgca ttggctcata tttttggcga tattattgat ttagaaaaaa ttgatagtag
     1981 ccgaattgaa ttggtaagaa aagaggtgga atttgaacaa ctcattcacg atattgctaa
     2041 ttttgggcat tttatggcgg gcaataagca gattaatttt gaagtgaagt atccgcctga
     2101 tttgccgaag tatatctata tcgaccacgc acgcttgagc caaattttat ggaatttgat
     2161 cagcaatgcg gtgaaattta cccctgcaag cggtcgaatt ttgctggaaa tttaccaatt
     2221 agataaagaa cagtttagct ttgcggtgac ggattcaggc atcggtattc cggaaaaaga
     2281 tcaacgcaaa atttttgata tgttctacca agcggaaaac tctaaagaga aaaaagcgca
     2341 aggtagcggg attggcttat cggtctcgaa acgcattgcg aagctaatgg gcggtgattt
     2401 ggtggtggca agccaagaaa atcaaggctc aacttttacc ctcactgtgc aggcagaaag
     2461 cacggaaacc aagccgatat ttgctattca gcaacattcc cttaaggtgc tattggtaga
     2521 agacattgaa atgaatgtgg tggttgcccg agcaatgttg gagaaaatcg gttgcgtggt
     2581 tgatgtagca atgagtggtg aagaaacgtt ccaacatttt gcacagaaca gctacgatct
     2641 gattttactt gatattcaac tgccggatac caccggtttt gaaattgcac agcaattaag
     2701 attgcaatat gaaaacgagg aaattgacta tttaccgctg ttggttgctt tgacggcaaa
     2761 tgtgatccaa agccggcagg agtaccaagc acaaggtatg gacgatgtgc tacacaaacc
     2821 gctctcttta gatgaattaa tgcgttgtct caaccaacat tttggagatg attttttgca
     2881 aaaaaatgaa gaaaaacagc cgcttgtaga gagaggttct gagaatttac cttatagcat
     2941 tacaattctt aatgaattga ttggggtaat ggggaaagag aatgtgcttg ccaatatgga
     3001 tttatttgct gatttaatgc ccacttattt ggcaaattta cagcgttatt taagtgattg
     3061 gcaaaccaca aattctgtgg aaagccgtaa attaacggcg gacgaggctc ataagattaa
     3121 gggagcatta gcatcagtcg gattacatca gctacaacaa actgctcagc ttgctcaatc
     3181 cgataacggc gagcagtggg agcaaaatat tgcacactgg gtggaaatga tttgttccaa
     3241 atggcagatg gatttgcaat tagctaagga atatgttaga agcaaggggg acatttagta
     3301 aatttgaaat gttacgatgg tgcaagcgtc cacgcttgta ccaattttaa tatctgaagc
     3361 acaagcgtgg acgcttgtgc tatcaaaacg tatttaccat ttcttggttt tcggttttac
     3421 aaattcaatg cctttatctt tataggtaat atcttccagc tgtaatagaa aacgcttatt
     3481 cggcaagcca ccaccgaatc cggttaaggc ttgatttttc cctaataccc tatggcaagg
     3541 cactaaaatc gaaatcgggt ttcgcccaac tgcaccgccg acggctcgca tcgcacttgg
     3601 cttgcctagt tgggtggcaa tttcgccata agtagtagtt tgcccgtaag ggatttcacg
     3661 caaaattttc caaactgatt gctggaatgg agtgccttgc ggggcaagaa aatccaactg
     3721 ctgaaaatcc aatggctcgc cggcaaaata gcggtctaaa atttctttgg ttttgcaaaa
     3781 aatttctaaa atctgaccac ttgcagcttg agcggaaagg aaattatcaa gcgaggtggt
     3841 ttgttgctct tgccctagct caatgtaaat caagccttct tctgtggcta aaagcaataa
     3901 ttgcccgata gggcttgggt agtaatcgta gtaaatttga gatttcatgt ttttatgcca
     3961 ataaaaaaag aggtgtaatt gattttacac ctctttaaac cttaattcat caaattagaa
     4021 tttgtagttt acgtttaaac cgtaaagatt tgcacgagct ttgctcttga atgtggctaa
     4081 accgtcttca gagaaggtca ggttgctacc acgaagatgt gagtaaccta catcagcaga
     4141 taggtttggc gtgaaacgca cggttgcacc tacagaatac caagcacgat cagtgtccgg
     4201 aattgagatt gatggatgag ttacacttgc actttcatca aatgctacac ctgtacgcaa
     4261 tgttagcatt tcattcacat cataagacaa gcctaatgca atacgttgag agtcattaaa
     4321 gttctcggtt ttgtgcaata ggcggttacc ttgcatatca taagcttcta ggctttggaa
     4381 tttgctccag tctgtgcgtt tatagctgta ttgtgcagca agtttatcgg ttagtttgtg
     4441 gtaacctgac acttcccaga atgccggtag gcgtaatctt agtgtaccat caatctctgc
     4501 accgccggta atggtatcta ccatcttagg aataactaca ggaacggtat tagaatattt
     4561 gcctttaaat ttaagatcaa tttcagagtg gtaagtaaaa cctaaacggt ttctttcatt
     4621 gatattataa accaagccaa cattccaacc caatgcccat ttatcgcctt taagtttatg
     4681 aattgttgaa cttgcattgg tattttgaat gccattaacc aaacgttcta attgagcaga
     4741 attcgtgatg gtttggttta aattttgaga ttttaataaa ccgtttactt gagctaatac
     4801 ttgtgttttt tgagcttcaa gagcggtatt acctgctgcg atacctgcct caagagcttt
     4861 taaaccttga attgcacttt gtacttgtac tttcttgtct tccaaaaatt gtttagctgg
     4921 agcaaaacgt gccgcaccgg cacctaagaa acgtcctaat tctgcttttg cgtgtactgc
     4981 attcaaacct gcccctaata caaaaccata acctaaatca taagccgcac taaaattaac
     5041 attcacagca cttaatgatg tacgaccacc taagaaacca gcagaatagt tagggtcaaa
     5101 ttcagatatc aaaccataat ttacatttac gccaccacca atagaaaggc gctcattgat
     5161 aggtgaaacg atataagcat ttggaacaat agcggtagga atgacatttt tatgtgaggc
     5221 atctgcacct gtagcattga gctttccatc aatatttaca tcagcatcta cgaaaatacc
     5281 accggcagaa atttcggttt gtttaaataa cgtcattaac gcagggttgg ttgcaacaac
     5341 agaagcgtta tcggctacag cggcattacc tgcgtaagct ctacctaaac cggatgttga
     5401 aatttcagct aattggaatg cggcagcaga tgcaccggct gagctgaatg ctactaatga
     5461 agcgattaa
//
LOCUS       DANLXK010000146         5466 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.147, whole genome shotgun sequence.
ACCESSION   DANLXK010000146 DANLXK010000000
VERSION     DANLXK010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5466
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(211..405)
                     /locus_tag="PXD88_002326"
     CDS             complement(211..405)
                     /locus_tag="PXD88_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281857.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
     gene            complement(402..1352)
                     /locus_tag="PXD88_002327"
     CDS             complement(402..1352)
                     /locus_tag="PXD88_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL6281858.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            complement(1363..2022)
                     /locus_tag="PXD88_002328"
     CDS             complement(1363..2022)
                     /locus_tag="PXD88_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281859.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NELKQIRRIILLEKAEVLFNQFIEQNKENLAEIYTYLFYSGKFKQNKNLTDESEEQAI
                     LAYLTENIMARIEKEQPLEKTLILYSEQLASFEQKSPMALHREKFEAKPTGLAELINN
                     L"
     gene            complement(2032..2238)
                     /locus_tag="PXD88_002329"
     CDS             complement(2032..2238)
                     /locus_tag="PXD88_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL6281860.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            complement(2708..3922)
                     /locus_tag="PXD88_002330"
     CDS             complement(2708..3922)
                     /locus_tag="PXD88_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6281861.1"
                     /translation="MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEK
                     QESIQSFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRL
                     TDLDRIMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEE
                     LAEFMQDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKG
                     GKNPHSVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKY
                     KGLLVAHGLRSIASTYLHERFTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQ
                     EWADFVEQCKSI"
     gene            complement(4125..4200)
                     /locus_tag="PXD88_002331"
     tRNA            complement(4125..4200)
                     /locus_tag="PXD88_002331"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4165..4167),aa:Ile,seq:cat)
     gene            complement(4294..5031)
                     /gene="pgeF"
                     /locus_tag="PXD88_002332"
     CDS             complement(4294..5031)
                     /gene="pgeF"
                     /locus_tag="PXD88_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL6281862.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(5063..5449)
                     /locus_tag="PXD88_002333"
     CDS             complement(5063..5449)
                     /locus_tag="PXD88_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL6281863.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
BASE COUNT         1334 a         1041 c         1148 g         1943 t
ORIGIN      
        1 tatttctata tcttcgccag tgagttgttt aatgcgtttt gttgcctgct ctaaggtgta
       61 ccactttcta gccggtagtt tatagtttgt cattgctgta ctctcatttg atttggttat
      121 tgttttttat taatgatagc aataatttca aagggtgcaa gcggtcgttt tttgttgcaa
      181 aaatgcaaaa agcccctttc ggggcttggg ttagtcatca agaaaatcta cgcaacctat
      241 tagcttttct tgtgccggtt ggggtttagg ttcgccgtgg gcggttaaaa tgcgataggc
      301 ttcaatttcg ctgactttct caagttctaa caggtctgaa acaaaatcga gtttttctaa
      361 aagctccatt tcttccgctt gttggatata gctttctagg ctcattcttc aataacctca
      421 atattttcaa ttaaacaaca ggcgttaaaa tcttctacaa tgtaatccac attgagggag
      481 taaaatgtct ctacgctgtc tttttgtggc gtatcaaacg ctttacggcg gatattgttt
      541 aaatgaagat atagcgaaag gttatctaat cgagtgatta aaatcgcatt gcttgggaag
      601 tagggaatac ttaccgcttt tagtccgcct ttagcttgtt ggcataaggt taataagtcg
      661 gctaggtttt cgcttaaatc gttgtgttca agctgaatta catcatcagc gataatatcc
      721 cgcccacaaa tggcgatcat atctccgccc attgcatacg ctgggctaat tttgcctaat
      781 ccctgcttaa tcagagcatt taggcttttg tattgttgct ctttgcctat ggttgctcca
      841 ttaattaccg cttcgggctt gccctctctg attttttgta gccagccttt tttcacgtct
      901 tgggcgagtt ggttgtttgt cgcgtttgat gtatctgcac ggcttacgcc ttgccagcca
      961 accattaaaa gccctcttag aaggttgtca tcaagtaact gatttaagcg ttcttctaag
     1021 ctgttttcga ggttgtaagc atcgattttt tcatagcgaa tatagctatc aatgttgatt
     1081 tgttcgcagt ggtatttttg agcgggtgca agggcttgtt ttggctctcg ttcctctccg
     1141 ctttcggtgt tggttgtgcc ggctatcggt gtgaatagcc caatcgcttc gccctttgcg
     1201 tgcttggttt gcactaaatt caataattta aaaaggcgat tttgttttaa gcggctaatt
     1261 agttttgcct gttcttcggg gctatcgtca aataaaataa cgttaccttg tttatctagt
     1321 tttaatgcgt gggcgaaagt ggataaactc attttttacc tcttataagt tattaattaa
     1381 ttcagctaag ccggtaggtt ttgcttcaaa tttttcacgg tgtaatgcca ttggcgattt
     1441 ttgttcaaaa cttgctaact gttcagaata aagaattaat gttttttcaa gtggctgttc
     1501 cttttcaatt ctagccatta tattttctgt tagatatgcc agaatagctt gctcttcact
     1561 ttcatctgtg aggtttttat tttgtttgaa ttttccactg tagaataagt aagtataaat
     1621 ttctgctaaa ttttctttat tttgttcaat aaattgatta aataatactt ctgctttttc
     1681 taataaaatt atacgtctga tttgttttag ttcattctgc tgttggaata atatttcttg
     1741 ctctgcgtag catttatttt ctaaatcaac aatcaacgct tgataatatt ctatgcgtgc
     1801 ttgtaaacca ctatttttat ttttgatttc aacatattca tctgctgaaa gcgtgccgat
     1861 attggctaaa ttcgtttttt gccgtgcgac aaattccgct ttttcgtttt gcaatgcctc
     1921 aagaatattt ttcgctttgt ctaattcggt ctgaatagct aaaacggctt tttcttgttc
     1981 gtggaattta gctttttgtt ggttaaatgt ttcaagtgtc ataatttgcc cttattggtt
     2041 gcggtgttgt tcaattttgc gttgaatcca ttgctggatt tcactttcta gccatacttt
     2101 gctatttgcc ccaatactga tactttgggg aaaatcgccg gctttcattt tgcgataaat
     2161 ctgcgtttct gaaagcgtag ttacggctga aacttcatct attttcataa atcgctgttt
     2221 tgctggtgtg ttctccattt tgttttactc cgtaaaaatt tgctttggcg tgctattgcc
     2281 tgctaacgtg tgaaagaata aatcatcttg gattttttgc tatttgttag ggctgtgaaa
     2341 ggagatttta cagattagag gggcttaatt ctgatttgga aaacttgcaa gcggttattt
     2401 ttctctgatt ttttgcaagt tttcagcggt tctttcatcg ttctgtcatc gagtttttaa
     2461 aagtggtgtt tctgcctgcg taaatttgcg ttttcttgcg taaaattgcg taataaaaaa
     2521 cggctatatg aaagtttttc acgctatacg gggcaatgtt tgggcttaat tttgcatttg
     2581 cgtagaaatc gagactttaa gtgtgcgggc gaggcgtggg atagacggca cgggctggga
     2641 gctgatagga aaaaatgaaa atttttcatc aagcaaaaag aaaggcggat tgctccgcct
     2701 ttgtcattta aatgctcttg cattgttcta caaaatccgc ccattcctgc attattccac
     2761 gtctgcggtc tagccagttt ttacggtggt atgcactcat tacggtgtct ttgttcgtgt
     2821 gggataaaca agcctcaatt actagcgttt cagtagtaaa acgttcgtgt aaataggtgc
     2881 tggcaatgct tcttaaaccg tgagccacta aaagcccttt atattttcca ccgcttaagc
     2941 gttttattgc attattcacg gtttggctat tagccggttt gtttcggtct gttcggtgtg
     3001 taaaaatatg tttatggtgt ccgttatatt tcttcatttc ctctaggatt gcgatagctt
     3061 gttttgttag cggtacagaa tgcggatttt ttccgccttt cattctatct gccggaatgt
     3121 tgagcgtctt agtttcccaa tctatatcgc tccattgcac cgctacggct tcaaacggtc
     3181 taagaatatt caagagttgc cattcaacta ataatttaat ttgaggcgtt ctatttgatt
     3241 tctgcaagtc ttgcataaat tcggctaact cttcgggcat tattgctggc tggtgtgtcg
     3301 tgcttacgct ggaaaacgcc tttttaatga cgctgattgg gttaaaatta attctcccac
     3361 acaataccgc ataatcaaga atttctatta aattccctgc tattctgtgc aaagtgtcgg
     3421 gcattatccg atctaagtcc gttaagcggt tgattgtatc ggttaaggta aaatcttcca
     3481 gcgtatagcc ttcaaaacgt gggaataaat gattttctaa ccgctgtaag catttttcca
     3541 ttgttttagg cttgcatttt ccctttgata gcttccaatc agcccattta taggcgaaag
     3601 attgaataga ttcttgcttt tccttagctt ctctttgcat tttggctaaa tgctcgaaag
     3661 ggtctaagcc ttgtaaaaca agggtattta gttcgtctct ctttaagcgt gcttcggcta
     3721 agctcatttg cggatagcta ccgattctat tttttgtgct tcgcttgcct gttttggggc
     3781 tgatatagct ataaatccat actttcgctt ttttctgtgc aagaataaat agcccgttgc
     3841 tgtctgcgat aggcttcgca tttggggaat atttgagatt ttttagtaat gtgtctgaaa
     3901 gtggtttttt agttgcagtc atttcttcta atccttgata tataagggtt tatcgaagtt
     3961 tatgatccct aaattttccc gttttcaaaa tagggatcat tttagggatc ataaacacta
     4021 agatacaatg caactaaaga agacaataag agactataaa agaatctaag ttcttgattt
     4081 tatagtaaat ttgagacaat gaaagacaat atgcaacgct tagatggtcc ccccagccgg
     4141 acttgaacca gcgaccaagc gattatgagt cgcctgctct aaccactgag ctatgggggg
     4201 atttgaaaag tggttggaat tatagagaaa aaccgagtag tcgtctagag gcagaagatt
     4261 actcggttaa ttattgaacg agagaaaata gggttattct gttcgccaaa ttaaggttgc
     4321 cattcgcccg gtttgtttgt ctcggcggta ggaaaaaaac agttctggtt ggctgtaggt
     4381 gcaatattca ccgcctgaaa tggcggtaat gcctaattta ttcagacgtt gggtggcaat
     4441 ttggtaaaga tttcctaaaa atttaccgct tgtagtgctg tcttcaataa gggcttcttt
     4501 cgctcttggg tcaaaagcac agaattggtc tgccacttca ctcccgactt gaaaagcatt
     4561 cggtccgata gccggcccta gccaagctga tatttcgtgt ggcgggcagt tgaatttctc
     4621 taccgtcgcc tctaatatgc catcgcataa cccacgccag ccggcgtgtg ccgccgcaat
     4681 ttccgacccg tcttggctgg caaataatac cggcaaacaa tctgcagtca tcactaagca
     4741 gacttggttt ggttgattgg tgtaaatcgc atcggcttta atattatcac ctgaataggg
     4801 aagttcaatc actcgggtgc tgtgagtttg ggttaaaaac agcggagctt gtggtaattg
     4861 aaatttctca accaataaag cacgattttg agcgatatct tgtggctcgt cattaacgtg
     4921 atcacctaag ttgaaactgt caaaaggcgg tttgcttact ccgcctgttc ttaaggtcgt
     4981 cagtgcgtga atatgtttag gcacattcca atttggaata attttatcca tttgcaaaaa
     5041 atctcaagaa aatgaccgct tgttatcggc gtactgcaat cgcttcgatc tcaatgccaa
     5101 catcttttgg taaacgagcc acttctacgc aagaacgagc cggaaaatta gggtgttcgt
     5161 tttcttggaa gaaggcttgg tattccgcat ttacctttgc gaagtcgtta agatctttga
     5221 caaatacggt ggtctttaca atatcggcaa cggttaagcc ggcttgttcg ataatggctt
     5281 tcacgttgtt cagagattgg cgggtttgtt gcacaatatc actcgggatt tcgccggttt
     5341 caggattcac gggaatttgc ccagaagtta aaaccatatt gcctaaatca actgcttgca
     5401 cataaggccc aatcgctgcc ggtgcatttt ctgtgtggat aactgtcatc ttgtgttcct
     5461 cttaat
//
LOCUS       DANLXK010000147         5463 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.148, whole genome shotgun sequence.
ACCESSION   DANLXK010000147 DANLXK010000000
VERSION     DANLXK010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5463
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            129..1262
                     /gene="carA"
                     /locus_tag="PXD88_002334"
     CDS             129..1262
                     /gene="carA"
                     /locus_tag="PXD88_002334"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL6281864.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            1365..4571
                     /gene="carB"
                     /locus_tag="PXD88_002335"
     CDS             1365..4571
                     /gene="carB"
                     /locus_tag="PXD88_002335"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL6281865.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(4646..>5463)
                     /locus_tag="PXD88_002336"
     CDS             complement(4646..>5463)
                     /locus_tag="PXD88_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HDL6281866.1"
                     /translation="FFAKSDRLYNVEDSLQENGSARESLAYSARIEIGLKTFLDNGGF
                     KAFTDNFQNLNGIKQLPGLAVQRLMEQGYGFGGEGGWKTAALVREVKVMGYGLPNGSS
                     FMEDYTYDLDEQNQVVLGAHMLEVCPSIAKEKSTLAIRPLGIGGKADPVRLIFSSKAG
                     KAVNATVVDMGDRFRMVVADLDAIASPNPMPNLPVGHAFWKLQPNFYVGTQAWILAGG
                     AHHSVFSLDIDADMLRMFAEYFGIEFIHINQNTELPQLKNELRWNDLAYKFTK"
BASE COUNT         1572 a         1247 c         1224 g         1420 t
ORIGIN      
        1 aataaaaaaa gaagaaagaa ataggcaaaa taactaattt ttacttgaat gcaaacgttt
       61 gcttgattaa acttagtcgc ctacttctaa ggctacacag ataaaatttg atgattagga
      121 gtaaaacaat gttcaaacca gcaattctgg ttctcactga cggttctgtc ttttccggca
      181 aatccattgg tgctgacggt cacactatcg gtgaagtggt atttaacact gcgatgaccg
      241 gttatcaaga aatccttacc gatccttctt atactaaaca aatagtcacc ctgacttacc
      301 cccacattgg caataccggc attaatttag aagataaaga atcccccaat gtttgtgcct
      361 ccggcttaat tattcgtgat cttcctcttc tccatagcaa cttccgtgcg tcctcctcac
      421 tttcagatta tctcattcaa caaaacattg tcgctattgc cgatattgat acccgccgtt
      481 taacccgaat tttacgcgaa aaaggggcac aagccggttg tattttagta ggcgatgcca
      541 cagaagagaa tattgctaac gctttggcat ttgccaacag tttcggttct atggctggga
      601 aagatttggc tcaaagtgtc acctgcaatg aattatataa atggacagat ggtgaatggc
      661 aattaggtaa aggttatgta ccgcaacaac aaaccgagtt ccacgtagtt gcctatgatt
      721 acggtgtaaa acacaacatt ttgcgaatgc ttgccgaacg aggctgtcgc ttaaccgttg
      781 tgccggcaaa aacctctgct gaagctgtgc ttgcgttaaa tccggacggt attttccttt
      841 ctaacggccc gggggacccg gagccgtgcg attatgccat taccgcaatc cgaaaattat
      901 tggaaacgca aaaacccatt ttcggcattt gcttagggca tcaactttta ggtttagcgg
      961 caggcggtaa aaccaaaaaa atggtgtttg gtcatcacgg agctaatcac ccggtacaag
     1021 atttagacag ccaaaaagtg ctcatcacca gccaaaacca cggttttgaa gtagatgaat
     1081 ccagcttacc atctaatgtg cgagtgactc accgctcact gtttgacggc acggtgcagg
     1141 ggattgaact cactgataga ccggcgtttt cgttccaagg tcacccggaa gccagcccgg
     1201 ggccgaatga tgttgcctat ttatttgacc gatttgtcag tgagatgaaa aaagtgaagt
     1261 aaggacgtac ctatgtgtgt ccatcaagcg gtcgaaattt gcaaaaaact taccaaaaat
     1321 gaccgcttgt agcctgaaat aaacgagata aaagagagcc caaaatgcca aaaagaacag
     1381 acataaacac tatcctaatt atcggtgccg gtccgattgt gatcggtcaa gcgtgtgaat
     1441 ttgactactc cggagcccaa gcgtgcaaag cgttgcgtga agaagggtat aaagtggtgt
     1501 tggtgaactc caaccctgca accattatga ccgacccgaa tatggcagat gtgacttaca
     1561 ttgagccgat tgaatggaaa acggttgaaa aaatcattga aaaagaacgc cctgatgcca
     1621 ttttaccgac tatgggcggg cagacagcgt tgaactgtgc cttagatctt tcgaaaaacg
     1681 gtgtgctgaa aaaatataat gtagagctga tcggagctac cgaagacgcg attgataaag
     1741 ccgaagatcg tggtcgtttt aaagaagcaa tgactaaaat cggcttgaat acgccaaaat
     1801 cattcgtttg ccacagtttt gaagaggcct tagcagcaca agagcaggtt ggctttccaa
     1861 ccctgattcg cccctctttc acgatgggag gctccggcgg tggtattgct tataatcgag
     1921 atgaatttat cgccatctgc gaacgtggtt ttgaagcctc gcctactcac gaattactga
     1981 ttgaacaatc cgtactaggc tggaaagagt atgaaatgga agttgtgcgt gaccgtgccg
     2041 ataactgcat tatcgtctgc tcgattgaaa acttcgaccc gatgggtgta cacaccggcg
     2101 actccattac cgttgctccg gcacaaacgc taaccgataa agagtatcaa attatgcgta
     2161 acgcttcgct ggcggtattg cgtgagatcg gcgtggacac cggcggttca aatgtgcaat
     2221 ttgcgattaa ccctgcaaac ggcgagatga tcgtcattga aatgaaccct cgtgtgagcc
     2281 gttcttctgc actcgcatct aaagccaccg gcttcccgat tgccaaagtt gcggcgaaat
     2341 tggctgtagg ctacacactc aacgaattgc gtaacgacat caccggaggg ctgattccgg
     2401 cttcattcga gccgacttta gattatgttg tgaccaaaat tccacgcttc gcctttgaaa
     2461 aatttgccaa tgcagacgac cgattaacca ctcaaatgaa atcggtaggc gaagtaatgg
     2521 caatgggaag aaccttccaa gagagtttac aaaaagcctt gcgaggcttg gaaaccggca
     2581 tttgcggctt taacttgctt tccgaagagc ctgaaaaaat ccgccgtgaa cttgccaacc
     2641 ccggaccaaa ccgtattttg tatgttgccg atgcctttgg agcaggcttt tcattggaag
     2701 aagttcacca ctattctaaa atcgacccgt ggttcttggt gcaaattcaa gacttagtac
     2761 ttgaagaatt agcgttagag aaaaaacagt ttagcgatct agatgctaac gaaatccgcc
     2821 gcttaaaacg caaaggcttc tcagacaaac gtatcgcaca gcttaccaaa gtcagcgaaa
     2881 aaatggtgcg ggattaccgc catacttacg ctattctacc ggtgtataaa cgggtagata
     2941 cctgtgcagc cgagtttgcc tcagatacgg cttacctcta ttctacttac gaggaagagt
     3001 gtgaagccaa accgtctgat cgcaaaaaag tgatgatttt aggcggcgga ccaaaccgta
     3061 tcgggcaggg gattgaattt gactactgct gcgttcacgc ctcgcttgct ctgcgtgagg
     3121 caggttatga aaccattatg gtgaactgca accctgaaac cgtttccacc gatttcgaca
     3181 cctccgaccg cctctatttc gagccgctaa cattagaaga tgtactggaa attgtgcgtg
     3241 tagaaaaccc gtggggcgtg attgtgcatt acggcggtca aacaccactg aaattagcga
     3301 atgccttatc tgatgccggt gtaaacatta tcgggacttc cgccgacagc attgatgccg
     3361 ccgaagaccg tgaacgtttc caacaaattc taaacactct cggtttaaaa cagccggcaa
     3421 atcgcaccgc ccgtaatgcg ttggaagcgg tggcattggc aaatgaagta ggctatccgc
     3481 tggtggttcg cccatcttat gtgctaggtg gtcgggcaat gcaaattgtg tataacgatg
     3541 aagagctaaa ccgctatatg cgtgaagcgg tatcggtttc caacgacagc ccgattttac
     3601 tcgaccactt cctcaataat gcgattgaag ttgatgtgga ttgcatttgt gacggcgaaa
     3661 atgtactcat tggcggcatt atgcaacacg ttgagcaagc cggtattcac agtggcgata
     3721 gtgcctgctc actacctgcc tattcgttaa gcggtcatgt tttggacgaa attcgcaaac
     3781 aaaccaacgc aatggcgttt gctctcggtg tgaaaggctt gatgaacgta caatttgcag
     3841 tacaaaatga ggtcgtttat gtgttggaag ttaaccctcg agccagccgt actgtaccgt
     3901 ttgtcagcaa agctaccggt cgcccactgg caaaaatcgc tgctcgcgtg atggctggtg
     3961 aaacccttgc cgacttaaat gcattagagg aaattatccc aagcaaattc ttcgttaaag
     4021 aagcggtatt cccattcatc aaattcccgg gtgtggatac cattctcggg cctgaaatgc
     4081 gttctaccgg cgaagtgatg ggcataggta atacctttgc tgaagcgttc ttcaaagcac
     4141 aactgggtgc cggtgaacga attccaaaag tcggcaaagt gtttatgtcg gttattgaag
     4201 agcataaacc tgctttaatt tacattgcca aacgtttcca agaacaaggc tacggtttat
     4261 gtgccacctt cggcactgca aacttcctac ggcaacacgg aattgcagtc caaacggtaa
     4321 acaaagttcg tgaagggcga ccgcatattg tcgatgcgat caaaaacggc gaaattgcgt
     4381 tggtaatcaa caccgtcagc ggcgagcctg aagtgattgc cgacagccac tctatccgcc
     4441 gtaccgcctt gcaacaacgt gtgcctattt acaccaccct tgcaggtgct gatgctatct
     4501 cctacggcgt aaaacatatc aatgagtttg atgtgtattc agtgcaggaa ttagaacaaa
     4561 aggctaacta aaataaagct aaaatgacaa gcggtcagat tttgcaaatt ttttacaaat
     4621 tctgaccgct tgtgtttgta gaggattatt tagtaaattt atatgctaaa tcattccagc
     4681 gtaattcatt tttgagttgt ggtagctcgg tattttggtt gatatggata aactcaatac
     4741 caaaatattc agcgaacatt cgtagcatat cggcatcaat atctaaacta aatacactat
     4801 gatgagcacc gccggctaga atccatgctt gagtacctac ataaaaattt ggttgaagct
     4861 tccaaaaagc atgcccaact ggtaaatttg gcattggatt tggtgaggcg atagcgtcta
     4921 aatccgcaac aaccattcta aaacggtctc ccatatctac aacggttgca ttcactgctt
     4981 ttcccgcctt actactgaaa attaagcgaa caggatctgc cttaccgcca atacctagcg
     5041 gtcgaatggc taatgttgat ttctctttgg caatagacgg acaaacttca agcatatgag
     5101 cccccaatac cacttggttt tgttcatcta aatcataggt gtagtcttcc ataaaggaag
     5161 aaccgtttgg taagccataa cccatcactt tcacttcacg cacaagagct gcggttttcc
     5221 aacctccttc accaccaaat ccgtagcctt gttccattaa acgctgaaca gccaagcccg
     5281 gtaattgttt aatcccattt agattttgga aattatcagt aaaagcttta aatccaccat
     5341 tatctaagaa tgtttttaag ccgatttcaa tacgagcaga atatgcgaga gattctcttg
     5401 ctgaaccatt ttcttgcaag ctatcctcaa cattatacaa gcggtcagat tttgcaaaaa
     5461 aat
//
LOCUS       DANLXK010000148         5403 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.149, whole genome shotgun sequence.
ACCESSION   DANLXK010000148 DANLXK010000000
VERSION     DANLXK010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            16..150
                     /locus_tag="PXD88_002337"
     CDS             16..150
                     /locus_tag="PXD88_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL6281867.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            154..1317
                     /gene="torC"
                     /locus_tag="PXD88_002338"
     CDS             154..1317
                     /gene="torC"
                     /locus_tag="PXD88_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL6281868.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1417..3882
                     /gene="torA"
                     /locus_tag="PXD88_002339"
     CDS             1417..3882
                     /gene="torA"
                     /locus_tag="PXD88_002339"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL6281869.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            3882..4472
                     /gene="torD"
                     /locus_tag="PXD88_002340"
     CDS             3882..4472
                     /gene="torD"
                     /locus_tag="PXD88_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL6281870.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
     gene            4612..5301
                     /locus_tag="PXD88_002341"
     CDS             4612..5301
                     /locus_tag="PXD88_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL6281871.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
BASE COUNT         1544 a         1182 c         1314 g         1363 t
ORIGIN      
        1 aaaaaaggag ttgaaatgcg ttcagaacta ttaaaaacgc ttttgctatc agggctgatt
       61 ttaccgctat tgatggcgtt tgccgtagga gcttacggct ttattgtgtg gatgttacaa
      121 ctgtttgtta ttggtttacc gggagcgtag aaaatgttag gttcaatcaa agcattattt
      181 actcggcctg caaccaaaat cgggttggga gtgttagttg gtatcggttt tattgccgga
      241 gcaattagct ggcatcaatt taataaagcg atggatcata ccagcactga agagttttgc
      301 gtgagttgcc actcaatgca gcagccgtta gaggagctta aaaaaaccgc ccactggtcg
      361 aataaaagcg gggtaacggc aacctgttca agctgccact taccgcacga ttataccgaa
      421 aaatatgccc gcaaagtgca ggcaagccgt gaggcgtggg cagaattatc cggcaaatat
      481 aaagaagaag gctcatttga aaaacaccgc ttagaaatgg cagagcgtga gtgggcaaga
      541 tttgccgcca atggttcaaa agagtgtaag gcttgccaca gctatgagcg aatgaatttt
      601 gataaaatgg gcgaagcagc tcgtaaggca atgaaaccgg ctgcggagaa agatcaaagt
      661 tgtatggatt gccacaaagg cattgctcac cacttaccga aagccgatga aaatgcactg
      721 aaatcgaagt ttgatcagtt tgtgaataaa tccccaaacc aaggcaaatc ttactacacc
      781 aaagggaatg ccgaattatt tctagacgaa ggtttaagcc aagctatcgg gcaattagaa
      841 accgccgtgc cggtggcatt tgtgcaagcg ggcaaaaatg cggatttggt tgagctgaca
      901 atgtggcgta aagagaaagg tttcggtcgc atttggtatc acgatttcgg gaaaaacatt
      961 accgatgcgg ttctaaccaa agagtttatg gcaaatcagc cgaaatttga ggtgttggaa
     1021 accaaagaag atccgattac cggcttgaat tggcaaaaag tgaaactaca agcgtggatt
     1081 ggcaaagctc aattattaga cgatgttacc ccaatctggg cgaatgcaga aaaccaatac
     1141 aaaacccaat gtagcacttg ccacagacag cctgatgtcg cccacttcga ttccaacagc
     1201 tggatcggct tattcaacgg aatggtcggc tttaccaata tggataaaca gaccggcaaa
     1261 gaggtgctac gttatttaca aatgcacgcc tccgatagtg aagaagcgaa gcattaataa
     1321 tattactccc ctctttacta aagaggggaa ttaatcgagc gttgaataac attctctgta
     1381 ctagctcacg tttttacaaa taaagaagga caagatatgc aacaatctcg ccgtcaattt
     1441 ttaaaaaata tgtctgtgat ggctgccgct gtcacaatgc cgaatttcct cgtgcctcgc
     1501 aatgtgtttg cgagtgaaga cctcagtcaa tggaaagttt ccggctctca ctggggggca
     1561 atgcgtgcca aaattgagaa cggacgagtg gcagaaatca aaccgttcga gtttgataaa
     1621 cacccgaccg aaatgctcaa cggcattaaa ggcttaattt acagcgattc ccgtatccgc
     1681 tacccgatgg tgcgtttaga ttggctcaaa aaccgccata acagcaacac cgcacagcgt
     1741 ggcgataacc gctttgtgcg ggtaacgtgg gacgaagccc tcgacctgtt ctaccaagag
     1801 ttagaacggg tacaaaaaga gtacggcccg tgggcgttac acaccgccaa tgtgggctgg
     1861 cgttcaaccg gtcaattcca cagttgcggt aaccatatga tccgagcgat tgcgatgcac
     1921 ggtaacagtg tcggcacggc aggcgactat tctaccggtg cagggcagac cattctgccg
     1981 tatgtgctgg gttcaaccga agtctattcg cagggcacgt cttgggaaat catcttaaaa
     2041 gagagcgaaa acatcatttt ctgggcaagc gacccggtga agaacctgca agtgggttgg
     2101 aactgcgaaa cccacgaagc ctatgcctac ttggaaaaac tgaaagagaa agtggcagca
     2161 aaaggcgtga atgtgatctg tgttgatccg gtgaaaagca aaacccagaa tttcttaggt
     2221 tgcgaacagc agtacatcaa tccacaaacc gatgtgccgt ttatgttggc acttgcccac
     2281 acgctctaca ccgagaacct gtacgacaaa aaattcttgg atatgtacac ggtcggcttt
     2341 gaaaaattcc tgccgtatct gttaggcgaa accgaagaca aagtggcgaa aaccccggaa
     2401 tgggcggctg aaatttgtgg tatttccgcc gacaaaatcc gtgaatttgc ccgaatgctt
     2461 gccggcaaac gcacccaatt tattttcggc tgggcaattc aacgccaaca acacggcgaa
     2521 caaccgtact ggatgggagc ggtgctagcc tcaatgttag ggcaaatcgg cttggaaggc
     2581 ggcggcatca gctatgctca ccattacagc tctatcggta ttcctgaatc cggtgcggca
     2641 atgccggggg cgttcccgct caatattgat gaggggcaaa ccccgaaata cgacaacaaa
     2701 gattacaaag gctacagcga caccattccg gtggctcgta tgaccgacag cttgctccac
     2761 gccggcgaaa ccattgatta caacggcaaa aaagtgactt acgctccgtt caaaatggcg
     2821 attttcaccg gctgtaacca atggcaccgc cattccgagc ggaacaaaat gaaacaggcg
     2881 ttccaaaaac tggaaaccat tgtttcgatc aactacagtt ggacggcaac ctgccgcttc
     2941 tccgacatcg tgctgccggc ctgtacccca tttgaacgca acgatattga cgcctacggc
     3001 tcatacagca accgtggcgt gattgcaatg cacaagctgg ttgatccact ctacgactct
     3061 cgctccgact ttgagatttt ccgagatctc tgccgccgtt tcggtaaaga gaaagagtac
     3121 agccgtggaa tggacgaaat gcagtgggta gaaaaactct acaaagattg tcgccgtgaa
     3181 aacagaggta aatttgaaat gccggagttt gctgaatttt ggcaaaaagg ctatgtgctg
     3241 ttcccagagg gcaaaccttg ggttcgccac gccgatttcc gtgaagatcc ggaattgcac
     3301 gcacttggca caccgtccgg ctttatcgaa atttacagca acaaaatcgc ctctttcggc
     3361 tatgacgatt gcaaaggtca cccaatgtgg tttgagaaag ccgaacgttc acacggcggt
     3421 aaaaattccg acaaattccc gtactggttg caatcagttc acccggacaa acgcttacac
     3481 tctcaacttt gtgaatcgaa agaactgcgt gaaacttaca gcgtgcaagg gcgtgaaccg
     3541 ctttacatta acccacaaga tgccgccaaa cacggcattc aagacggaga tttagtgcga
     3601 gtgtttaacg accgtgggca agcgattgtg ggggcggtgc tttccgacaa cttcccgacc
     3661 ggcgtagtgc gtttacaaga aggggcttgg tattcacccc ttgacgaaag cgtgggggcg
     3721 attgacacct atggcgaccc gaacacaatg accctcgaca tcggcacgtc caagttggca
     3781 caagcggttt ccgccaacac ttgcttggtg aacatcgaga aatttatcgg caatgccccg
     3841 gctccgaatg gctttaacgg tgcgattgag gtaacggctt aatgacgttg gcaatcagtc
     3901 gtgaagaacg gcaatttatc tatggctggt ttaacgcaat gctcgcccga gaactttcgg
     3961 acgagcagtt aaatgcctta caagcgggcg aatttgacga tttttttgca tacctcagcg
     4021 aattgggttt tgccgaacag gttgcaaaat ttcaagcaga agtgaccgct tgtaggcagc
     4081 tggaatttcc tcgtctagaa ctggcggctg actttgccca actgttttta ttggaaggca
     4141 atctcagtgc cattccttac gcctccgcct atttaagcgg cgaagcgtta gcgaaaaatt
     4201 tggcggaaat ggacagactg ctgggcgaat ttgggctgca agttaatcga gaaaccaaag
     4261 agccgagcga tcacctttgc gtttatctca ccctttttga ccgcttgctt gctgaaaaac
     4321 cgttggaaac gcaacagcaa tttctgcaaa accaactgat gagctggctc cctgcgtggt
     4381 tcgccaaagc caaaaccgtc aaaactaaca ccggcgttta tccggcgttg ctaaggttgt
     4441 ttgaacaggt gttgctgaag gaacaaagat aaagttattt atttgagaat gatttgtatt
     4501 gagcgaattg agaaaggaag ttaaaatttc aacttccttt tttattggct ggatttatcc
     4561 acattattac aagcggttat ttttataaaa aaatttacaa aggagacatt aatgcaaaat
     4621 aataaaacca cctacctaaa ttggtacgat ttatgcgtgc taaccctgat cctgtttggt
     4681 gaggcaattt atacctcaac ccagcaatat ttcatcacca ccgaaatgca aggtaatttt
     4741 gaagaaaatt taaccttttc aaatgaacaa aattattggg cattactgac gcaacttgca
     4801 ttgttgctga ttgcaatggg ctatctaaaa tggcggaatt ttgatttcag ccgttgggtg
     4861 attcgtccct cttggctggc tttttttagc ggtatcgggt tgtttatctt gctctcgtta
     4921 gcgatggatc tctattttga aacattatat ggtgtttaca acctagtgta tccggagcca
     4981 ttttgggcag tattgagaga agtgaatatt tctaccgtgc tgtatgcgat tttaaacggc
     5041 ttttatgaag aaatcttttt cctcggtatt tgcttggcgg ttaaacctga atatttaaaa
     5101 tgggcggtga tttattcact gattattcgg gtgagttttc atacctatca aggaatggaa
     5161 agtgcgttag gattaggaat ttggctcggt ttaattattt atttgctcta ctcacgctca
     5221 aagcagaaaa acctatttcc attttgggtg gcacacagta ttgcggatat tttggggctg
     5281 agtttgttgg cttattttta gttaaaggtg ctacatttaa gcggcataag ttgatagagc
     5341 tgatcgtacc agtagcataa aaacattatt atttgtatgg aaaggtgctt ttaggttaca
     5401 ata
//
LOCUS       DANLXK010000149         5277 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.150, whole genome shotgun sequence.
ACCESSION   DANLXK010000149 DANLXK010000000
VERSION     DANLXK010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5277
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1100
                     /gene="rnd"
                     /locus_tag="PXD88_002342"
     CDS             <1..1100
                     /gene="rnd"
                     /locus_tag="PXD88_002342"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL6281872.1"
                     /translation="QWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPILGLIQLF
                     DGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPEPMLDTQV
                     MAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADVWYLLPVY
                     EKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREELAILQVLA
                     KWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGKKILWLVE
                     QGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKRQLNQLFK
                     WYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            1157..1639
                     /gene="lrp"
                     /locus_tag="PXD88_002343"
     CDS             1157..1639
                     /gene="lrp"
                     /locus_tag="PXD88_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL6281873.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            1650..4310
                     /locus_tag="PXD88_002344"
     CDS             1650..4310
                     /locus_tag="PXD88_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL6281874.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            4462..>5277
                     /locus_tag="PXD88_002345"
     CDS             4462..>5277
                     /locus_tag="PXD88_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL6281875.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTGNP"
BASE COUNT         1661 a          957 c         1200 g         1459 t
ORIGIN      
        1 accaatgggt tgaaacaaat gagcaattag aggccgtatg tgaacaggcc agaaaaacaa
       61 aagtagttgc cttagataca gagtttatcc gtacacgtac ctattatccg atattgggtt
      121 taattcaact ctttgatggc caacaggtta gccttattga tccaaatacg atttctgact
      181 tctcgccttt tgtgtcatta ttagccgata aaaatatcat aaaagtatta catgcctgta
      241 gtgaggattt agaagttttt gagtatcaat ttaagcaatt gccagagccg atgttggata
      301 ctcaggtgat ggcagccttt gccggcattg gtatttcgat ggggtttgca aaattggttt
      361 cccactactt aaatattgaa ctagacaaag gcgcttcccg aaccgattgg cttgccagac
      421 cgctaagcgc tgaacaatta caatatgcgg cagctgatgt ttggtattta ttgccagttt
      481 atgagaaatt ggcacaagca ttaacaaaaa gcacttggca aagtgctgta gcagaggagt
      541 gtgtcgcttt gttgaagaaa gcgaaacagc ctatcaataa ggaaaaagcc tataaaaata
      601 ttgccaatgc ttggcgattg aatcgggaag agttagccat attacaagta ttagcgaaat
      661 ggcggattga agaagcacaa aagcgcaatc ttgccttaaa ttttgtcgtg aaggaggcaa
      721 gtttagttca aatcgcaaaa agctgtccta aacacacttc ttcgctgtta gaatttatgc
      781 acccaaatga agtcagaatt cacggaaaaa aaatactatg gttggttgag caaggaaaag
      841 caatagaatc gaatgattat cctgaactca ttcagcgctt ggtggatgaa aagggttata
      901 aatattatat gcaagcgatg ttgcaaaaat tattagaaat tcaaccgctt gatatcgtac
      961 cggagttggt tgcaagtaaa cgtcaattaa atcagctatt taaatggtat attgatggaa
     1021 aaccatcaga aaaaattcct gaattattaa tcggttggcg aaaacctttt ggtgaacagc
     1081 tgctatcggt tttatcttaa atttcattcg ggttacatag actatgtaca gtataattgc
     1141 ctaaaaagga gtttatatgg aaaataaaaa accaccaaaa gcattagatg cgattgattt
     1201 aaaaatctta aacgagctac aacgtaacgg gaaaatttct aatattgaat tatcaaagcg
     1261 agttgggctt tctccaacgc cctgcttaga acgggtaaaa cggctagaaa aaaataacgt
     1321 aattatgggc tataaagctt tacttaaccc tgaattactt gatgcccctt tactggtgat
     1381 tgttgaaatt actttggtgc gtggtaagcc tgatgtattt gaagaattta ataaagcgat
     1441 tcaacaactt gatgaaattc aagaatgcca cctggtatcg ggggattttg attatctgtt
     1501 aaaaacccgt gtggcggata tggtatcgta ccgtaagtta ttaggcacaa cattgcttcg
     1561 tttgcccggc gtaaatgaca ctcgaaccta tgtggtgatg gaagaagtaa aacaaaccaa
     1621 ctatttgttg ttaaagtaag gagaattggg tgattgaaca acttaaacca cacctaaaag
     1681 gcaaagagaa cttgatcaaa cttatgcttt tgttgaccgg ctttttgggc gtttatttgc
     1741 taattgcttg ggcaagttat agtccattag ataatgcttg gtctgttgca agcagcatta
     1801 cacaaacaac cttgaataaa acaggtcact ttggtgcttg gagtattgat atgctctatg
     1861 caatgtttgg taaggttgca gttttagtac ctattgcatt aattattttc tcaatttata
     1921 gcttgggaat gggtttaagt gtcgatatga aatggaaaac tgtcttcatt cgcctagcca
     1981 gtttcttatt attgatggtc ggtcttgccg ggttatttag cgtgcttttt tcaaactcag
     2041 cttattatct gtcgggtggc tttgtcggtg gagtttggga gacaatatta tctgatacta
     2101 tcggacaatt tggtgcctta ttgattgcaa tgctttttac tatagctggc ttatattttt
     2161 gctctgttca atcattattg ccaatattaa cgcaatttta tgagtggata atggcaaaat
     2221 cagaagagag caaaacagct gaatctcttc agcatttgca aaatactgag caaaaacaac
     2281 cgcttgtaac tgaaaatgaa gcggtggaag ttgtagatga ccataaaccg caatttaccg
     2341 atatctccgc ctttaaacgc ccaaacatta gtggtttaag acactcggaa aatgtagaga
     2401 tagataaccg agaaatgtat gaaattgaaa gagatcttga gctaccgact attaatattt
     2461 taatacagcc tgatatggtt aaccaagttg cggaacaagc tacatcgggc tatgagttac
     2521 caaacgaaga atccaatgta ttgcaaatgc cgaccattcg cttaaatacc gctatcgaaa
     2581 acgaggtgga tacaatcgaa aacagttcat cattggaaga cctgaaaata gcagaatcta
     2641 tgttacctca aattcagctt gataatgata ttgaagatac tgaagaagct attgacgatg
     2701 tgcgtgaaat tacaccggaa tttatggtaa cgccgcccaa ggcgatgaaa gatgtgtctg
     2761 agcagccagc ctatccaaaa ggctatggtg atacgttaat tcacccgttg ttacaacgaa
     2821 aagtgataac cgaaaaaccg acaacaccat tgccaacgct agatttgttg gataaagcac
     2881 cgattcaaag ccagcaaatt accgaacagg aaatacgaga aacctctgtg cggctagaag
     2941 cagaattagc aaactttggc gtaaaagcta ccgttgaaga tgtattggtc ggtccggtag
     3001 tgacccgtta tgaaatccaa ccggctgccg gggtaaaagc ctccaaaatt accaatttag
     3061 cgagcgatat agctcgtggc ttaatgttta aagcgattag gattactgaa gttatcccaa
     3121 acaaacctta tatgggtatt gaaactccga ataaacaccg tgaaacagtg tggttgcgtg
     3181 atgtgctaga cagcgatgaa ttccgcaata ccactgcaac attgccaatg gcactaggta
     3241 aagacatcag tggtgagcct gtggtggtcg atatggcgaa aatgccacac ttactggtgg
     3301 cagggcagac cggtgggggt aaatcggttg gggtgaatac gatgatttta agtctattgt
     3361 tcaaacttac accagaacaa gtccgcttta ttatgattga ccctaaagtg gtggagcttt
     3421 ccatttataa cgatattcct cacttattaa cgccggtagt aaccgatatg aaaaaagccg
     3481 ccaacgcact acgctgggcg gtggaggaaa tggaacgccg ttatttgctg gtaagccatt
     3541 tacaggtgcg taatattgaa ggctataatg cgaaaatcga ccaagcggca gcgatgaatt
     3601 tgccgattcc agatccaacg tggcgaccgg gcgattcaat ggatagcctt ccgcctccgc
     3661 tacaaaaatt aagctatatt gtgctgattg tcgatgagtt tgcggattta atgatgtctg
     3721 ccggtaaaga agtggaagag tacattatgc gaattgctca aaaagcccga gcggtgggaa
     3781 ttcacttaat tcttgctacc caacgtccgt caaccgatgt gattaccggc gtgattaaag
     3841 ccaatattcc aagccggatt gcgtttacag tagcgagcca aattgactca agaactattt
     3901 tagattcagg tggagcagag gcattattag ggcgaggcga tatgctctat tcaggagctg
     3961 gcagcccgga tattattcgg atacacggtg cgtttatgaa agacgaagaa gtgcaacgcg
     4021 tggcggataa ttggcgggca agaggaaaac caaactactt ggaaagcatt gtggaatccc
     4081 gctcggaaga ggctgatggc aaaaacgatg gcggaacggg cgatttagat ccgctatttg
     4141 acgaggttgt tgaatatatc acggaaaccg gttcggtctc tatcagtaat attcaacgcc
     4201 gcttctcgct tggttttaac cgtgcggcta gaattgtgga tcaaatggaa gctcaaggca
     4261 ttgtttctga gccacttaaa ggtggcaaac gagaagtgct ggcgaggtaa aacacataca
     4321 agcggttaga tttctgtgaa attttgcaaa ttttgacaaa aatctaaccg attgtattta
     4381 tctaatgcta aataagcata gtataaggct agtctttggg ctaaaattaa cgcaattttt
     4441 acatctttta aggttgaata tatgcgatta gatgatatta aagaaagtaa aaatgttgaa
     4501 gacagaagat tcaacaatgt gggtagaact aaggttggta gagggaaagg tggaatatta
     4561 acctttatta tcgtgcttgt tggagcttat tatggtgttg acttaacagg tttaatgggc
     4621 ggtggcgtag aatatgagga gcagacatca gcattaaatg aaagtgaaga aaaacagcta
     4681 agaaccttat ccgctaaagt attaacgacc acagaaaata tttggacttc ctacttccag
     4741 caaaatggtc taacttataa agagccgtct ttggtgcttt accgtggggc aattcaaact
     4801 gcctgtggca ccggtcaatc tgcaatgggt cctttctatt gccctgtcga tcaaaaggtt
     4861 tatttagatt tatcattcta tgatgatatg cgtaaaaaat taagagcatc gggcgatttt
     4921 gccttctctt acgtgattgc acacgaggtt ggccaccacg tccaaaattt attgggcata
     4981 acaagcaaaa cccaacgggc tcaaatgaaa gcctcatcta aagccgaagc aaaccaaatt
     5041 tcagtcaatg tagaattgca agctgactgt tttgccggcg tttggggaca ccaactcgca
     5101 aaagccaacc gattagagga aggcgatgtg gaagaagcct ttaatgctgc ccaagcagtt
     5161 ggagatgacc gattacagca acaaagtcgt ggctatgtcg tgccggatag cttcacccac
     5221 ggctcatctg cacagcgttt ggcttggttt agaaaaggtt taaccacagg aaatcct
//
LOCUS       DANLXK010000150         5268 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.151, whole genome shotgun sequence.
ACCESSION   DANLXK010000150 DANLXK010000000
VERSION     DANLXK010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5268
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            141..821
                     /locus_tag="PXD88_002346"
     CDS             141..821
                     /locus_tag="PXD88_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL6281876.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            833..2101
                     /locus_tag="PXD88_002347"
     CDS             833..2101
                     /locus_tag="PXD88_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL6281877.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAVLSIIIYYILSAIFY"
     gene            2156..2767
                     /locus_tag="PXD88_002348"
     CDS             2156..2767
                     /locus_tag="PXD88_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL6281878.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(2821..4119)
                     /gene="aroA"
                     /locus_tag="PXD88_002349"
     CDS             complement(2821..4119)
                     /gene="aroA"
                     /locus_tag="PXD88_002349"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL6281879.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(4165..5259)
                     /locus_tag="PXD88_002350"
     CDS             complement(4165..5259)
                     /locus_tag="PXD88_002350"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL6281880.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
BASE COUNT         1512 a         1072 c         1062 g         1622 t
ORIGIN      
        1 tttgcaaaaa aattattaaa acaaaccgct tgtcttaaaa acataattta atttcgtgat
       61 ctttactaat acatcaagta aaatacgccg gactttacag taagaagtca ttgtcaatat
      121 tatcactatg gagatatttt atggcattga ataacatttt aggtttattc gcccagtccc
      181 cacttaaacc gttacaaaaa cactcaaata aagtgactga atgtagcgag ttattagaat
      241 ctttttttga agcgactttt gaacatgatt gggaaaaagc agctgaagtg cgcggtaaaa
      301 ttgttgattt agaacgccgc gcagatgccc ttaaacgtga aatccgctta aaactgcctc
      361 gtggtttatt tatgccagtt gaacgcggtg atttattaga actagtcaca caattagata
      421 agttagcaaa ctattcaaga gatatttccg gtcgcattat tggtcgtaaa ttaatcattc
      481 ctaccgaaat gcaaccactt ttcaaaaaat tcctttctcg tagtattgat gctagccgtc
      541 aggtacgcaa agttttggat gaaatggatc agttattaga aactggtttt agagggcgag
      601 agcttgattt cgtcaataaa atgattcttg aacttgacca aattgaagat gataccgacc
      661 aatatcaaat tacattacgt catacacttc ttgagttaga aaaaaacctg aaccctattg
      721 atgtgatgtt tttatacaaa tgtattgaaa gaatcagcgt tctagctgac caagcccagc
      781 gaattggttc tcgtattgaa cttatgctgg cgaagtcata ggagaaaatt aaatggaatt
      841 actcaatcaa tatggctcaa tactggtgat tattactgct attgtagggt ttatgatggc
      901 tttcggtatt ggtgctaatg atgtttcaaa tgccatggga acatccgtcg gctctggaac
      961 aattacgatt aaacaagcta ttttaattgc tatggtattt gaatttgctg gtgcttatct
     1021 ggcaggcggt gaagtcgcag atacaattaa aagtggcatt attgatccgg cacaattcgc
     1081 caatagccct gatatcctgg tacttggaat gatggcatct ctctgtgctg ccggaatgtg
     1141 gctaattatt gcaactaaaa tgggttggcc ggtttcagca actcacacaa tcattggtgc
     1201 cgttattggt tttgcattaa tcactattgg ttcagatgca attcaatggg atgcattagg
     1261 tggaattgtt gggagttggt ttgtgacccc tattcttgcg gggatcgtag catattcgat
     1321 ctttattaac tcacaaaaac tgatctttaa ccgctcaaac ccattcaaac aagcgaaaaa
     1381 gtatggcccg atgtacatgg gaattactat ttttatttta gttattgtaa ccgtgtcaaa
     1441 aggcttaaag cacgtaggat tacatctaga tacagctgaa acattgggaa tttcattcgc
     1501 gcttgcctta cttgctttta tcattggata tttttatttc cgcagtaaaa gctttgcaat
     1561 gaaagctcgt gcagaagaga aaggcttcgc tggcgttgag aaaattttta gtattttaat
     1621 gcttattacg gcctgtgcta tggcttttgc tcatggctct aatgatgttg ctaatgctat
     1681 tgggcctcta gctgctgttg aatctattgt aagaagtggt ggaatgattg aaggtaaaac
     1741 gactttagcc ccttggattc tcccactagg cgccttaggt atgatgattg gtttagctat
     1801 tatgggcaag aatgtaatgg ctacagtagg tactggtatt accgacctta ctccaagccg
     1861 tggctttgct gctcaatttg cctgcgccgt cacggttgtc attgcatcag gtactggttt
     1921 accaatatca acaacccaaa cgcttgtagg agcagtatta ggtgtgggat tcgcccgtgg
     1981 tattgctgca cttaacttag gcgttattcg taatattgtt atatcatggg taattacctt
     2041 gcctgtaggt gctgtgcttt caattattat ctattatatt ttaagcgcta ttttctatta
     2101 atttttcaaa aagaatacag gcaactgtat tcttcctagc tttagaggaa tatatatgaa
     2161 gaaattatca tcagctcttc tgtcttgttt tttactcggc ctatctagcc ctgctttaac
     2221 ggcagacact tacattactg aaaatctgag tacatttatg cgcaaaggtg ctggtgatca
     2281 attccgcatt tcaggcgcta ttcaagcagg tgaaaaagtc acagtattag atcgtaaaga
     2341 gcgctacagt ctgattcgag atagtcgtaa ccgtgaaggt tgggtactta attcagactt
     2401 aagcgatact gctagtccaa aagagctgat tcctcaatta aaacaacagg ttcaagattt
     2461 aaccaatcgc ctgagcaaaa tcgataccga atggcaacaa cgtaccgcag aaatgcaacg
     2521 tagaacgcaa gattcagtgc agaaaagcag tgatttggtt gaggaaaatg cacaactaaa
     2581 acgtgaactg gaaatcctga aaaacaaaaa tcgtgattta gaaacaatgc acgattccga
     2641 gaaacgtgaa atcgtgattc agtggttcat ctatggtggt gctgtgttag gcgcaggttt
     2701 actacttggg ttactcgtgc ctttcctgat ccctcgccgc agacgtaaca acagcggttg
     2761 ggcttagtct gccacaataa aacgtaaaaa ggattcagtt ttctgaatcc ttttttactt
     2821 ttatctgacc gataattttt ccaactccct aaagtaagtc gggaacgttt tagcggtaca
     2881 atttggatct aagatcgtca cttctgtatt cgataacgca attaatgaaa aacacattgc
     2941 catacggtga tcgttatagg tttcaatttc agcgtgctgg aagttttcta acgcaagcgg
     3001 ttgaatccga ataaaatctt ccccttcttc tacctctgcc ccgactttac gcaattcggt
     3061 tgccattgct gtcaagcggt cggtttcttt tacccgccag ttataaatat tgcggataac
     3121 tgtttctcct tcggcaaata aagcggttgt tgcaatcgtc attgccgcat caggaatatg
     3181 attcatatcc atatctacgc cttttagcgg ggattgctcg gcttgaataa aatcctctcc
     3241 ccaagtgatt tttgccccca ttttttccaa cacatcggca aacaagcggt cgccttggat
     3301 cgatttttta ccaatgcccg ttacttttac cttgccttta atcgcaccgg aggctaagaa
     3361 ataagaggca gaagaggcat ctccctccac caaataatta ccttgtggag caacatagcc
     3421 ttgtttacct ttaactaaaa aggttttgta atctcgattt tcaaccgtaa taccaaaatc
     3481 gttcatcatc gaaagggtaa tatcaatata aggttttgat accagatcac cgataatctc
     3541 aatttccata tcgccttccg ctaatggggc agacatcagc aatgcggtta gaaattggct
     3601 ggaaatcgag ccgtcaattt gcacttttcc gccctgcaaa ccgctattgc taattgccaa
     3661 cggtggatag ccttcatttt ctaaatactg tacctctgcc cctacttggc gtaaagcatc
     3721 gactaagtgt ttaatcgggc gttctttcat tcttggttca ccggtaagaa tgatttggga
     3781 tttttcctca ccttttaaac acaatgctgc tgcaagtggt cgcattgccg tgcctgcatt
     3841 gccgagaaac agtgataagc cgttttgaac cttaaaagct ccaccaatcc cttcaactac
     3901 acagacggtt ttatcgtccg atagctcata tttcacgcct aacgctttta aggcattgag
     3961 catatgtcga atatcatcac tatctaataa attggtcact tgagtcgtac cggtggctaa
     4021 ggcggctaat aataaggctc ggttagacag gcttttagaa ccaggtaaat tgatctcgcc
     4081 ttctactcgg gaaatcgggg ttaaagttag tttttccatt tttctcttta aatttgtaaa
     4141 attttcataa aaggtaaccg cttgttaagc taacactttc aataaggcag taaaaaatct
     4201 ctcgttttct tgcggtaaac cgatactaat gcgtaaatga ttcggcattc cataacctgc
     4261 tatcgagcga acaatcacgc cttcacgcag taatgcctca taaatcggag cggcaggacg
     4321 tttgaaatca atagtaataa aattgccctt agaagggata tattccaagc cgtttgcttg
     4381 gcagaaagcc tcatagcgag ccatttccaa gcggttattt tctgccactt ttttgacaaa
     4441 ttcatcatca ttcattaccg caatcgctga agctaaggca agactattgc agttaaacgg
     4501 ctggcgaaca cgatttaata aatccgcaat ttcagggttt gaaaccgcat aaccaatccg
     4561 aagcccggct aagccgtaag ccttagagag tgaacgtgac acaattaaat tcgggtattt
     4621 tgccaataag ccaaacgaat ccacccgttc ttgaggcgca gtaaactcgg tataagcttc
     4681 gtccagcacc acgattacat ttgccggcac tttagctaaa aagccctcaa tttccgcttg
     4741 ggttaaaaaa ttaccggtcg gattattcgg gttggcaata aaaattaatt tagttttttc
     4801 ggtaattgca gccaaaaagg catctaaatt gtgtccccaa tttttagcca gaatttcacg
     4861 ggcaacggca ttaatcgctt tcgtcaccaa cggatacaca ataaacgcat actgagaata
     4921 gataatttca tcttgctcac cggcgaaggt gtgggcaaac agctctaata aatcgtttga
     4981 gccattgcct aaggtgattt gattggcttg tacgccaaat ttttgggcaa tagtggtttt
     5041 taattcaaag ccgtttgaat ccggatagcg ggttaaatcg tcaagctgat tcagaatcgc
     5101 cttttttgca ctttcaggaa aaccaaatgg gttttcgttc gaggctaatt taatgatatt
     5161 ttgaatccct aattcacgct ctagctcctc aatcggcttt cctgcttggt aaggcgaaag
     5221 ggatttcacg ccctcatttg cgatgttgat aaattgcata ataacctc
//
LOCUS       DANLXK010000151         5252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.152, whole genome shotgun sequence.
ACCESSION   DANLXK010000151 DANLXK010000000
VERSION     DANLXK010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            9..1193
                     /locus_tag="PXD88_002351"
     CDS             9..1193
                     /locus_tag="PXD88_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL6281881.1"
                     /translation="MKQKKLNTTLLFITLSLISACSSLPTSGPSYSEILASNENTAET
                     QLPEVNLIKLDNITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPP
                     AVLFGGTFSAEGQGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGAL
                     SRKANQPQALVRIANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDV
                     TVRLTRGNKVRSMAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFS
                     SKGITLAEAIGKMGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPT
                     VYQVNLLKPQSMFLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIR
                     AY"
     gene            1265..2368
                     /locus_tag="PXD88_002352"
     CDS             1265..2368
                     /locus_tag="PXD88_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6281882.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLLASIREHKN"
     gene            2368..3165
                     /locus_tag="PXD88_002353"
     CDS             2368..3165
                     /locus_tag="PXD88_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL6281883.1"
                     /translation="MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLIVSDIILLFIGLLCVRSFSKGIEPR"
     gene            3162..3809
                     /locus_tag="PXD88_002354"
     CDS             3162..3809
                     /locus_tag="PXD88_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL6281884.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(3887..4516)
                     /locus_tag="PXD88_002355"
     CDS             complement(3887..4516)
                     /locus_tag="PXD88_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL6281885.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(4588..5061)
                     /locus_tag="PXD88_002356"
     CDS             complement(4588..5061)
                     /locus_tag="PXD88_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL6281886.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT         1674 a          929 c          983 g         1666 t
ORIGIN      
        1 gtactataat gaaacaaaaa aaattaaata ctacattatt atttataaca ttatcattaa
       61 tttcagcctg ctctagccta ccaacgtccg gcccaagcta tagcgaaatc ttagcaagta
      121 atgaaaatac agctgaaacg cagttgcctg aagtcaattt aatcaagtta gataacatca
      181 ccgtacaaaa cttataccaa gagcaacaat ctcaacgttt ttcaggattt gatggctcaa
      241 tgggtgtggg tggttatgct ggaacagtta atgtaggcga tatattagaa atatccattt
      301 gggaagcgcc acctgccgtg ctatttggtg gaacatttag tgctgaaggg caaggtaatg
      361 ggcatttaac ccaattacct cagcaaatgg tgaacaaaaa tggaacggta actgtgcctt
      421 ttatcggtaa tattaaagtt gctggaaaaa cacctgaagt aattcagaat caaattgtcg
      481 gagcattgag ccgtaaagct aatcaacctc aagcattagt tcgtattgcg aataacttgt
      541 cgtctgatgt tacggttatc cgccaaggaa atagcattcg tatgccatta agtgccaata
      601 atgagcgtat tttagatgca gttgcggcag taggtggtac aagcgaaaat attgaagatg
      661 taacagttcg tttaacacgt ggaaataaag tgcgttcaat ggcgtttgaa acattaattg
      721 ctgacccctc acaaaatatt acattacgtt caggtgatgt tattgcttta atgaatactc
      781 cttatagctt taccggatta ggagcagtag gtaataatca acaaatgcgt ttttcaagta
      841 aaggcattac ccttgctgaa gctatcggta aaatgggagg attaattgat gagcgttcag
      901 accctcgtgg tgtgttcgta ttccgccata ttccttttac acaattagat tacgataacc
      961 aagctcaatg gcgtgaaaaa ggttatgcag agggaatgga cgttccaact gtttatcagg
     1021 tgaatttatt aaaaccgcaa tcaatgtttt tattgcagcg tttccctatt caagataaag
     1081 atattgtata tgtgtcgaat gctccactgt ctgaatttca aaaattcttg agaatgattt
     1141 tctccattac tacaccaatt acaggtacag ctaatacaat tagagcgtac taattagctc
     1201 atagataaaa tggtaaaaaa tcattaaaaa atgaccgctt gtaacacttt tcgttgagga
     1261 ttttatgtca aagaagaaaa aacatttttt agccaaccct ttgttgtggc taactgtaat
     1321 tattccaact gcttgttctg gaatttatta ttccttattt gcctctgata tttatgtttc
     1381 agaatctagc tttgtggttc gttcgcccaa taatcaatcg agcttaacag gcgttggtgc
     1441 tttattgcaa aactccggtt tcgcccgttc tcaagatgat acctattcag ttcaggaata
     1501 tatgcgttcc cgtaccgcat tagaacaact tgaagcagaa attccggtaa agcgttttta
     1561 tagtgagcaa ggtgatttac taagcaaatt taacggttta ggatttaacg atacccaaga
     1621 agcattttat cgttatttta aagaacgtct gaatattgat gtcgattcta tttcaggtat
     1681 tgcaacgcta cgcgttcgtg cttttaatgc agaagaagga caaaaaatta acgagaattt
     1741 attacagcaa ggggaaacat taattaaccg ccttaatgaa agagcaagac aagatacggt
     1801 tgagtttgca gaagagcgtg taaaagaggc cgaaaaagac gtcaataata ctgcgttagc
     1861 attaagccaa tatcgaacta aaaataaaat ttatgattta ccggcacaat ccagcgttca
     1921 gctctcatta atttctacct taaaaagtga attaattcgg gtagaaacac aattagcaca
     1981 attgaagtca attacgccgg ataatcctca ggtagccgca ttacaaatgc gtcaaaaaag
     2041 tttgaaaaaa gaaattgatg atcagtccaa acaacttgca ggaggtaata cttctgtagc
     2101 aacgcaaact gctgaatatc aacgtttggt tcttgctaac gaattagctc agcaacaact
     2161 tgcagcagca atgacttcat tacaaaatac acgaggtgaa gctgatcgcc aacaacttta
     2221 tttagaggta attggtaggc caagcaaacc agattgggca ttagaaccct acagaattta
     2281 taatattata tcaacttttt ttatcggctt aattctattt ggagtattaa gtttgttact
     2341 agcaagtatt agagagcata aaaactaatg cgatatggtg ataatacaac ctttaaacgt
     2401 tcctgtgtga ttcaaaaacg ggtgattcac gcccttttaa tgagggaatt aattactcgt
     2461 tatgggcgta aaaatattgg cttcttatgg ctttttatcg aaccattatt gttaacgtta
     2521 gtgattactg ttgcttggaa atatataaaa gcagataagt tttcaacttt aaatattatc
     2581 gcttttatga ttacaggcta ccctatcgca atgatgtgga gaaatgcctc taatagagct
     2641 caaggagcaa tatcagcaaa cttaagtttg ctttaccaca gaaatgtgag agtgctagat
     2701 acgatattta ctcgagtttt attagaagtt actggcgcat ctatcgccca aattctctta
     2761 atgactatat ttatcgctat tggttggata gaaatgccta acgatatttt ctatatgctc
     2821 tgtgcttgga tattaatggc attttttgcc ttaggtttag gtttaattat ctgtacttta
     2881 gcacattata ttgaaccttt tggtaagatt tggggaacat tcagcttctt tctacttcct
     2941 ctttctggtg cattcttctt tgtccataat ttaccgctaa ctgctcaaaa tattgcctta
     3001 tggtttccaa tgattcatgg tacagaaatg tttagacatg gttattttgg tgaaacggta
     3061 attacctatg agagcattag ttatcttata gtaagtgata ttattcttct atttatagga
     3121 ctgctttgtg tgagaagttt tagtaaaggg atagaaccaa gatgattagt attagaaatg
     3181 taagtaagca atatcgaact aataacggtt ggaaaaccat attaaaagat ataaattttg
     3241 agctgaaaaa aggcgaaaaa gtggggattt tagggcgcaa tggtgcagga aaatcaacct
     3301 taatccgttt aatgagcgga gtagaacctc caacaacagg tacgattgaa cgtcaaatgt
     3361 cgatttcttg gccactggca tttagtggtg cattccaggg tagtttgacc ggaatggata
     3421 atcttcgttt cgtcagccga atttatgatg ctgattttga ctatgtaaaa tctttcaccg
     3481 aagaattttc agaactcggt gaatatttat atgaaccggt aaaaagctat tcttctggta
     3541 tgaaggcccg tttagccttt gcattatcgc tttctattga atttgattgt tacttaattg
     3601 atgaagtgat tgcagtaggc gatgctcgat tcgctgccaa atgtaagcac gagctttttg
     3661 aaaaacggaa agaccgttca ttgattttag tttctcatag cccagcctca attaaagaat
     3721 attgcgattc tgcaatggtt ttagaagagg gtatcatgca tacttttgat tctatagata
     3781 acgcttataa tttctacaat aaaacataaa agaacaagcg gttatatttc acaagttttt
     3841 cgcaaaaaac tctcaaaata taaccgcttg ttactaaaac tgaaaattag aaacctgcgt
     3901 ctttttctaa ttgttcaact aatgcctcag ctaaacctaa agcatcagct aaattagcta
     3961 agaaaacgat ttctttgcgt tctaaatctc tgcatactgc acgggaagct aagtaaactt
     4021 gtgtagccaa tgcttggtca ttacctactt ggcgggcaat ctcttcaact gtagccggag
     4081 tgtccatttc ttgacgaatc cactcaatga cttcagcctc atctccaact tgggaaacaa
     4141 tagctgcttt ttcctcttca gtaatagcac catctgaagc agcagcggca atcattgctt
     4201 gtaaaatcac tttacttgcc acattttcat ctacattttc aaaattattt tggctaagtt
     4261 ctgaaaccga tgaattttgc gcttgatact tttggtatgc ttgataagca aggctaccga
     4321 tagcggctaa agagcctaat tttgctaaac ttgaaccgcc attacgccca aataacattg
     4381 aaattaaacc aatagcgaca gcgccgccac caattttagc gatttgatcg tttttagaat
     4441 tacctttaat taatccgttt gtagcggcat cttttgctgt atctaatact tgacttaaaa
     4501 tcttactgaa atccattttt gttcctcttg gtaagtaaat gaaatttact cattagtcct
     4561 tagattcaaa caagagttca attcaaatta aagataattt ccacaacagt gcttaaactt
     4621 ctttccggag ccacatacac aaggttgttt ttgatgaggc aaaggtacgg taggatccac
     4681 aaaaaaccat cgctcatcaa tttgaacaaa aagagaggtt tcgtggtgtc cctgtatccc
     4741 ctcatctgta tcaaaaaagg ctttaaattc aacctgacta tgtattctcg aaagagaagg
     4801 taagtgattt agcacggata atcctaccca ttttgtattt tcagcccact ctttcattgc
     4861 agtctgatca agtaatttct gctgacttgg cactgtcgtt tccacaatat agggaatatt
     4921 aaccaaagta taagcactgt aacgggagcg cattaattgc tctgccgttg atgcaaatgt
     4981 ctgttttaaa tggaaaggtt ggcaacattc agcgtagcgt ttgcctgttt ggcaaggaca
     5041 agcggtgatt ttttctaaca tttttacatt tccgcataaa aataaagatg tgaaaagttt
     5101 acgctataaa taaagaaaaa taaattttat aaaaaagcgt gacatacccc ttgtggataa
     5161 cttatgcaaa aatcgtgaat tttttgggta ttcattgctt taaaaagcct ttattctata
     5221 gattgtggat aacttaagat tttatccaca gg
//
LOCUS       DANLXK010000152         5251 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.153, whole genome shotgun sequence.
ACCESSION   DANLXK010000152 DANLXK010000000
VERSION     DANLXK010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5251
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            107..931
                     /gene="iolB"
                     /locus_tag="PXD88_002357"
     CDS             107..931
                     /gene="iolB"
                     /locus_tag="PXD88_002357"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL6281887.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(1007..2458)
                     /locus_tag="PXD88_002358"
     CDS             complement(1007..2458)
                     /locus_tag="PXD88_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL6281888.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(2636..3946)
                     /locus_tag="PXD88_002359"
     CDS             complement(2636..3946)
                     /locus_tag="PXD88_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL6281889.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(3962..4657)
                     /locus_tag="PXD88_002360"
     CDS             complement(3962..4657)
                     /locus_tag="PXD88_002360"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL6281890.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
     gene            4873..>5251
                     /locus_tag="PXD88_002361"
     CDS             4873..>5251
                     /locus_tag="PXD88_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6281891.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNNLDELLGHNCNLPNIKFAAAHS
                     LSLSIMPKLIKKLSQTNENFIYSV"
BASE COUNT         1644 a         1173 c          941 g         1493 t
ORIGIN      
        1 tcatttttgt gatctaagta gcaagtttac agattgccgg tattaaaatg agacaaaatt
       61 tcgtatagtt tgaaagcgta ttccatttcg ttaagcgagg tttcctatgt ctagtccatt
      121 attgtctaaa cccaatttca accaacatga agggttaatt cagcacatta cccctgaaaa
      181 tgcacagtgg gaatatgttg gatttgatgt ttatcagctc agtaagcaac aaattacgct
      241 ggaaagtggt gaaaatgaac tttgtctagt ctttgtgacc ggttttggct ctgtctatgt
      301 tgatgattat gcttttgaaa atatcggcaa ccgtaccacg ccatttgaaa aaattccgcc
      361 ttatgcggtc tatatcccgc cacacaaaag cgtgttggtt aaaaccgaac tcaatttaga
      421 attggcagtg tgcaaagcac caagtcaggg taattatccg gtgcgtttga ttagcccgaa
      481 ccatatcggt gtggaaaaac ggggctttgg caacaatcaa cgcttggtgc ataatattct
      541 gccggaaacc gaagcagccg acagtttgct ggtggtggaa gtctttaccg atgaaggcaa
      601 taccagttcc tacccaagcc acaagcacga tgacaaacac tctaccgaag aaacctattt
      661 ggaagagacc tactaccacc gcttcgatcc accacaaggt tttgcaatgc aacgggttta
      721 taccgatgat cgcacacttg atgaatgtat ggcggtgtat gataaaaatg tggttaaagt
      781 gcctcgtggc taccaccctg ttgctaccat tgccggctat aacaactact acctaaatgt
      841 tatggcaggg ccggtacgca aatggaaatt tacttgggaa caagatcatc tttgggtgaa
      901 cagtgaaacc tataaagcca aatttgagta atgcaagcgg tctttttcca ccaatttttt
      961 acaaaataag ggattaaaaa tgggacgctt ttggcgtccc attcggttat actttcatac
     1021 aaagatattt tatttctaaa aactcttcaa taccgtactt cgaaccttcc cgcccaagtc
     1081 cagactcttt ccagccgccg aacggagcga tttcgttact gatgatcccc tcattaatcc
     1141 cgacaatgcc atattccaac tgctccgata ctcgccaaat tcgcccgata ttttggctga
     1201 ataagtaagc cgccaaacca aactcagtat cattcgccca ctggataacc tcttcttcgg
     1261 tttcaaattt gaaaatcggg gcaaggggag caaaggtttc ctcacgagcc actttcatcg
     1321 cttgagtgac atttttcaga atggttggct ggaagaatgt gccacccagt gcgtggcgtt
     1381 caccgcctaa caccagttct gccccaagtg aaagggcatc gttaatgtgg ctttcgactt
     1441 tttccaccgc tcgttcacta attagtgcac ctatcgtgac ctcttcctca aatggcgagc
     1501 caagcttgat ttgagccact ttctcactca attttgcaag aaattgctca taaatgcccg
     1561 cttgcacata aattcggtta gcacagacgc aggtttgccc accgttacgg aatttagagg
     1621 caaacacgcc ctcaaccgct gtatctagat ccgcatcatc aaacacaatc gccggtgcat
     1681 taccgcctag ctccaatgcc aattttttta ccgtccctgc cgattgttgc attaaaattt
     1741 tgccgacacg ggtggagccg gtaaaggtga gtttgcgtac ggtcggatta gtgctcaact
     1801 cccgccctac accttcgaca tcgctactgg taataatgtt aaatacccct ttgggaatac
     1861 ctgcttgatc cgctaattgg gctaatgcta aggcagaaag cggggtttct gccgccggtt
     1921 taatcacaat cgcacaacct gccgctaacg ccggtgccgc tttacgggta atcattgcat
     1981 ttgggaaatt ccacggtgta attgctgcca ccacgccaat gggttgttta gtcacaaaca
     2041 agcggcgacc ggctttatct tgtggcaaga catcgccata aatccgcttg ctttcttcgg
     2101 caaaccactc gataaaactg gctccatagg caatctcgcc tcgactttct gccaatggtt
     2161 taccctgttc tagacttaaa atctgggcga gttcttcttg gttttgcata atcagctcaa
     2221 accatttacg caaaatcacg gaacgctctt tgggcaataa tgcctgccat tttttctggg
     2281 caactgcggc tgcttcaatc gcttgagcgg tttcttccgt gcctaaatca gccacctcac
     2341 cgattttctc accattagtc ggattctgta ccgtaaaggt tttcccattt tggcttgaaa
     2401 caaatttacc gttaatatag gcttggaaac ggagtagcaa aaatttgtga tttggcataa
     2461 tcactccttg aatggttaaa aagagaacaa tattgactat aatccaattt cagtaaagag
     2521 aaaagagctg aaaaataact ttttactcaa taataaagca ccttagacaa gcgttcttct
     2581 aaggtgcagc catttattat tgagaattaa cttaaattct ctacatattt aataattaag
     2641 atacaatcat tggagcccat acgaatccaa aagcaagccc aacagcaacc ccaactaaag
     2701 ctggaagcat aaacggatga tctataatat atttgccagc acgagttgaa cccgtagtat
     2761 ctaattccat cgctgctaat gaagttgggt aggttggcag gataaaaatg cctgtaattg
     2821 caatgaaaga agccaaaatt gcccagttag ggatccccaa gcttactgct aatggaataa
     2881 taagagcaga agttgaccct tgtgaataaa gtaatgcaca agtaaaaaag agtactacag
     2941 ctaacaacat tggatattca gttaaaatat ttccaataga ggctttaatt tctattaaat
     3001 gtgcatcgac aaaagtcata cctaatgtaa caatcccgat aattaccgca atagaagtca
     3061 ttcctgagcg gaaaattgga ctagccacaa tcgtatcagg tttaattttt cctaccaaca
     3121 tcattaagca cgaagaggct aacatcatca caataattat atctcgggta ctcattgact
     3181 tcccattttc atatactggc tttaaccctg gaacggctgc aagtagaaca accaatacag
     3241 ttgctagtaa gaaaatgcca atcgatagtt ttgctccttt tgaataggta gattcactcg
     3301 ctaacttacg agatgggctg acgattcctg cttttaaacg ttctaaataa acaacatcat
     3361 tttgcaattc acagccctgc ttagaagcaa caaatgcagc aaccatagag gcaataaaag
     3421 aaacaggtaa gcatactgct attacttgaa aaaatgtaac actgttgttt tccattactg
     3481 ctatcatagc cgccattgca gcactcaatg gagaacctgc aatagctaat tgagaagaca
     3541 caaccgagcc ggctaatgct cttgaagggc gaataccact ctcttttgcc acttctgcaa
     3601 tcacaggtaa ggtggaaaag acgataaaac ctgtaccagc cataatcgtc attaaccaag
     3661 taatcatcgg tgcaataaag ttaatatatt taggattttt acgcatcaat acttccgcat
     3721 aacgaacaag taaatccata cctcctactg cttgtaacac agcagcacct attacaacag
     3781 tcataataat cagcattaca tcaactggaa tagaacccat aggtaaacca aaacctagag
     3841 ttagaatcgc aagccctaaa ccaccatata gtcctattcc taagccccca gaacgcagtc
     3901 ctaaatagat tgcagcaagt accacaaaga tttctgcata aatcatatcc atctccttaa
     3961 attaatgagt ttgataccaa tcaattgctt ttttaaccaa taccaacgtt gaatctacat
     4021 aacgcattgg ctcacgctct atttcttgag ctaaaataat aggtacttct gtacaaccta
     4081 aaataattac ttctgcacct aaacgaatga gttcatcacg ttgttgtaac attagctctg
     4141 tggctttctc taactcacct gattttaata aatagatact atccattact gccttttgac
     4201 cattttctgt cgggcaaata aaagtcagtc cttgtgcttc aagctgtttt ttgtataggt
     4261 ctaccgccaa agttgcatca gttgccaaca atccaacccg ccattttcca cacttcaaaa
     4321 cctcatcaac cacacaatca atcatactta gcatctctac ctgacttttg gccttcaagt
     4381 gttcaaacca ataatgtgca gtattacatg caataatgat gcaggttgcc cctgcactct
     4441 caagcccttc aatatatttt tccattaccg gagccggatt ctctccattt gctaaaatat
     4501 agcgagttct atctggtatg tcgggaatag aggaaatcaa taatggaata tgagcttgat
     4561 cacaatcagc tggtgttaag cggataaatt tttggaacat atctgctgtt gctgcaggtc
     4621 ccattccacc taaaatgcca ataatatttc ttgccataca cttctcctta taagatttaa
     4681 tttactgcga tgacttatac aaacaagtta tgcaaaaaag aaatgcaata aatcgaatca
     4741 gtatgcaaaa aatgcaacaa agctctttat agatagaaaa aaaatcttta aaatcaataa
     4801 aatactaata tatcaaatat aaatttaatg catttaatga aatcataatg cgaaatttgc
     4861 attggttagg atatgaaaaa catagaaaca aaatggttag aagatttctt aacgctagaa
     4921 gaatgtcgcc atttttctca ggcagcagaa aaaagaaatt tgtcacaatc tgcatttagc
     4981 agacgtattt tagctttaga agaagttgtg ggagtgaagt tatttgatcg tacctctatt
     5041 ccattacaac tcacagaaca aggtaagcta tttcattcac aaacgcgaaa cttattacaa
     5101 caattacaga ataatctaga tgaattatta ggacataatt gtaacttacc taatattaaa
     5161 tttgcggcgg ctcattccct ctctctttct attatgccca aattaattaa gaaattatca
     5221 caaacaaatg aaaattttat ttattccgtt g
//
LOCUS       DANLXK010000153         5142 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.154, whole genome shotgun sequence.
ACCESSION   DANLXK010000153 DANLXK010000000
VERSION     DANLXK010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5142
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            26..2830
                     /locus_tag="PXD88_002362"
     CDS             26..2830
                     /locus_tag="PXD88_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL6281892.1"
                     /translation="MYKIKHSFNKTLIAISISSFLSIAYATESIENPQPIIQLSESLS
                     SKYSGKGVKLGVMDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNPVE
                     KEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLEKV
                     IQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNNVF
                     AINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESKKQ
                     PGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIGVA
                     DEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEKGV
                     DNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLDGE
                     NHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSGLI
                     ANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAKRG
                     LIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQSA
                     LEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEHLN
                     QKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTALNI
                     GLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMPNQ
                     WIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSISP
                     YIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMNLD
                     YSRVKSANLFGWKVNVGFSF"
     gene            complement(2971..3408)
                     /locus_tag="PXD88_002363"
     CDS             complement(2971..3408)
                     /locus_tag="PXD88_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL6281893.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(3444..4364)
                     /locus_tag="PXD88_002364"
     CDS             complement(3444..4364)
                     /locus_tag="PXD88_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL6281894.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(4380..5069)
                     /gene="ung"
                     /locus_tag="PXD88_002365"
     CDS             complement(4380..5069)
                     /gene="ung"
                     /locus_tag="PXD88_002365"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL6281895.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         1709 a         1038 c          949 g         1446 t
ORIGIN      
        1 aagcttattt tttggaggta aaattatgta taaaataaag cattcattta acaaaacact
       61 tattgcaatt agcatttcta gttttttatc tattgcatac gctacagaat caatagagaa
      121 tccacaacct atcattcaat tatctgagag cctcagctca aaatatagtg gcaagggtgt
      181 taaactaggc gtaatggatg agggcttcat ggttaaacac cctcgccata gttcacatct
      241 tcatcctctt attcatcaat taacaacacc cgaaggcgaa gtaagaatct acgatgcaag
      301 ttaccctcaa ttcgaggtaa accccgtaga aaaagaagat ggaattgatc ttattccttc
      361 tcttgaaaca cacggtgcag gtgtagctgg tattattgcc gctcaagcag ataaaactct
      421 tggtgatggc tatagtggtg gtattgcaaa gggagctgag ctttatgttg caacgaagtc
      481 atataaacga actttagaaa aagttattca agatgctaag aaagaattag aaaatgcaaa
      541 agacgaagag gatgaaaaaa cgccaagtct ggatcaaatg gcaaagaatg acttattagc
      601 aagcaaagaa aaagaaatgg caattgaacg tgctgaatgg gcatccgggc tgaataaatt
      661 actagataat aatgtttttg caatcaataa tagttggaat cctttttcta ttagcgatga
      721 catcaatgtt gtagataaat tttatcaatc tatcaagcaa aataagcaca atccgctact
      781 tcaagctatt atgagagcca aaaatagcaa caccttatta gtctttgctg ctggtaatga
      841 gagcaagaaa cagccaggcg taatggctct tctaccacgt tactttcccg agcttgagaa
      901 aaatttaatt tctgccgttg cggtagataa agaacaaaaa attgcttcat actctaacca
      961 ctgcggagca agtaaaaact ggtgtgtagc agcaccgggc gatttacatg ttttaattgg
     1021 cgttgctgat gaacataaaa aaccacaata tggcttaaca aaagagcaag gtacgtcatt
     1081 ttcagcacct gctataactg cttcattagc agtattaaaa gaacgctttg attatctgac
     1141 tgcgactcaa attcgcgata ctttattgac taccgccact gatttaggtg aaaaaggggt
     1201 cgataatgtt tatggctggg gtctcattaa cctgaaaaaa gctgttaatg gcccaactca
     1261 attcctaaat gatgaaacga ttaccgtaac tcgtgatgac cattggtcga atccactcgc
     1321 cagccaattt aaaattacaa aaaaagggga caaatcactg catttagacg gcgaaaatca
     1381 tttagatacg gtagcagttg aagaaggtag attggcctta aacggtaaaa ctaaggtgaa
     1441 aacaatcagt aaccatgcaa atttagctgt caatggaacc gaagttgagc aaaattattc
     1501 ttcgtctgga caaagccaat tagaagtgtt gggcaaatct gggctaattg ccaatgctca
     1561 agccaatata catttagccg gctcgttaaa aattgatgat aaattaacag aaaaaaccga
     1621 agcaggtgat gtttcagcga ccgtagtaca gttgaaagat aaagcaactt atcaaggcgg
     1681 atttacacaa ttagtcgaaa acgagaattt agccaaacga gggttaatcc aagatctcta
     1741 tttcaaagag agcgaaatta tcgcaaaagt gaataagcca ctaactgatg agaaagccga
     1801 tacaaacggg caagccggtt tagcattatt aaatgcgtta agaactacac ctattgccta
     1861 tcgccgtagt tggtataacg gttggctgca atctgcactc gaacaacgta aattagataa
     1921 tctgcactat gctgtatcta acaatattta tgcagatagc cttgaattgc tacgtagcca
     1981 aaatgccaaa ggcttaaccc aagcacagca acatttgttt acggcatacc atacaccact
     2041 gcaaacgact gtttgggctg aacatttgaa tcaaaaacaa tcagcctcat cgaagcatac
     2101 cgatgttaaa caccaccaat cacaattggg agtaaaccac aaactggcag ataaaacggt
     2161 acttagtgca acactttcac agcaaaaaaa ccgcttagaa aaaccatttg cacaagctac
     2221 cttaaaacaa acagcattaa atattggctt acgttatcat ttagataacg cttggtttag
     2281 tgaagctaca ttgcaatttg ctcgccagaa atatcaacaa agccgtcgat ttgctagcca
     2341 tcaactaggt actgcagaaa ccagaggttc aacgctcggt ggtgaaatgc ggatcggtta
     2401 tcaatttatg ccaaaccaat ggataattga accaagcctt ggcgtacaat ggattcaaac
     2461 caaaatgaat ggtttaaatg aaagtggcga acttgcgact caaacggctg caatgcgtta
     2521 tcgtgatgtg aatattgttc caagcgtgaa attacagcga actttccaac ttgagcaagg
     2581 ctctatttcc ccttatatcg ggctaaatta cttgcataga ttaaatggaa aaataaccaa
     2641 aattaccagt aacattgcag gaaaaacact gcatagtgaa gcaacgacga aacgtaatcg
     2701 ccaattaaac ggcgaagtcg gggtgaaact gcattataaa aattggttta ctgcgatgaa
     2761 tttagattac agtcgagtga aatctgcaaa cctatttggt tggaaagtaa atgttggctt
     2821 tagtttctaa cttattatgg tgggacacaa gcggttaatt tagggtgaaa atttgcaaat
     2881 ttcactctat tttcaaccgc ttgagagaaa aaaccttgaa caactgttca aggtttttgt
     2941 ttagtgttct atgactaaat aagaaaaaac ttattgctta cggacaaata aggtaattcc
     3001 ctccactttc tggacttcaa tcttatctgc tacttgtaaa ttattaccta taacacgcca
     3061 agtcgtatca ccaaattttc ctcgagcgat gccattaggt aagatttcaa ccacaaagcc
     3121 ttgagctcct agcatagcat gctctcgaga gttaagggaa ctgctctgat cctctttctt
     3181 gtcttttcca tgctgatatt tccaccaaat aagactaaaa atagtcgcaa ttatcgcaaa
     3241 taacgcaatt tgtaacgctt gccctaatgt aaaaagtgca acgatgaaag caagaataag
     3301 cgaggcaaat ccccaccaca taataaagac acccggtaat actaattcta atgcaagtag
     3361 tacaaagcct aatatgctcc agccaatcca attaaaaaac cagtccatac tccctccata
     3421 tactcaatta atccggtttt aggctatgag cttgttttat tgctttttaa aatttcagca
     3481 ataccagcaa cagaaccaat caaatttcca gcttctaacg gcataagtac aactttactg
     3541 ttatctgaag aacctatttc tttcaaagct tcggtgtatt tttgtgcaat aaaatagtta
     3601 atcgctgtag tatcgccttt agcaattgct tcagaaacca tttgagtggc tttagcttcc
     3661 gcttctgcgg ctcgttcacg agcttctgcc tgtaagaatg cttcttgtct ttcaccttct
     3721 gcttttaaaa tacgagattg tttttcccct tcagcccgca gaatttcagc ttgtcgaatc
     3781 ccttctgctt caagaatatc agcacgttta ttacgctcag ctttcatttg agcgttcatt
     3841 gccgcaacca gctctttcgg tggacgaaca tcccgaatct caatacgggt gacttttact
     3901 ccccaaatat tagtcgcctc atcgacaatg gaaagtaatc taccgttaat taaatcacgc
     3961 tgagagagca tatcatctag atccatagag ccgagcacgg tacgcatatt tgtcatggtt
     4021 aaattaacaa ttgcttgctc taaatgattc acttcatagg cagctcggcg agcatcaact
     4081 gtttgaacaa aacatacagc atcaatcgca acacttgcat tatcacgtga aataacctct
     4141 tgcgatggaa tatctaaaac ttgctccatc atattcattt ttcgcccaat acgatcaata
     4201 aaaggtacga caatgttcaa ccccgggctt agcgttttag tataacgacc aaaacgttct
     4261 actgtccaat gatagccctg tggcacaatt ttaatagtcg aacttaatgc aactaaaaca
     4321 agcacaacaa atgcaatact aacaatcggt aaatcaaaat tcatcgtttg ctccttaaac
     4381 taatgtgttg aagaataact aacgtctact gataattgcc aattaattgg ggatattcct
     4441 tgagaaatca agtagttatt ggctttagaa aaatgtttac aaccaaaaaa tccacgatat
     4501 gcggaaagtg gtgatgggtg cggagaagct aacacacaat ggcgattacg atcgataaat
     4561 tgcccctttc tctgagcgtg gcttccccaa agtagaaaga ctaaattatc acggtgttga
     4621 tttaattgtg cgatcacttt atcggtaaaa atttcccaac caatttgtga atgcgaaccg
     4681 gctctacctt gctcaaccgt taagctggtg tttaacataa ataccccttg ttttgcccag
     4741 tcaattaaat agccatgcgg tggaatttga aatccttcaa tatcttcaga taattcttta
     4801 tacatattga ccagagaagg tggcggggca accggcggtt taactgaaaa ggctaatccg
     4861 tgggcttgat ttgggccgtg ataaggatct tgccctaaaa ttactacttt cacgtcacta
     4921 aattcggtta aggcaaaagc actaaacacc tcgttttgcg gaggatagat gactttgccg
     4981 gctaatcgtt cgttatgtac atattgtaaa atttgttgaa aatacgcttt ttgtttttct
     5041 tcgcctaaag cttctgtcca agttttcata aaaccaccaa gtgtatattt tttacccaac
     5101 caactcaatc atgtctaaaa atggttaaat ttttatcgct tt
//
LOCUS       DANLXK010000154         5093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.155, whole genome shotgun sequence.
ACCESSION   DANLXK010000154 DANLXK010000000
VERSION     DANLXK010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(241..1557)
                     /gene="argA"
                     /locus_tag="PXD88_002366"
     CDS             complement(241..1557)
                     /gene="argA"
                     /locus_tag="PXD88_002366"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL6281896.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
     gene            complement(1686..1871)
                     /locus_tag="PXD88_002367"
     CDS             complement(1686..1871)
                     /locus_tag="PXD88_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL6281897.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            complement(1987..3309)
                     /gene="pepP"
                     /locus_tag="PXD88_002368"
     CDS             complement(1987..3309)
                     /gene="pepP"
                     /locus_tag="PXD88_002368"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL6281898.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            3525..3848
                     /locus_tag="PXD88_002369"
     CDS             3525..3848
                     /locus_tag="PXD88_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6281899.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(3925..4943)
                     /gene="glpX"
                     /locus_tag="PXD88_002370"
                     /pseudo
     CDS             complement(3925..4943)
                     /gene="glpX"
                     /locus_tag="PXD88_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
BASE COUNT         1515 a         1138 c          886 g         1554 t
ORIGIN      
        1 gtcttgtgtt taatgagagg gttgttagaa taaaacatga gagtttcctt tttgtttaga
       61 ttgatttttg acactcatat tctaaacggg aaactctcac tttttagagt gaattgtcag
      121 atcaagtctg atcttctaca gcagtaataa ttgccatagc ccctttgatg ggttgatgtt
      181 ttttcatagt tctcctttta tagttctctt ggtaacaagc ggtcaaaaac attgaatatt
      241 ttaccaaagt ggtaaaatta atactttaga acgacgttga taattgtaat tttcccgttt
      301 atagcgaggt aaatcttggg cacctgccag cctaaatcct cgctcttgga accattgtgt
      361 ggttcttgta gtcagcacaa agagtttctc cattcccagt tgcactgccc gtttttgaat
      421 attttccagt agaatatccc ctcttgagga atcacgataa tcagggtgaa ccgccacaca
      481 cgccatttcc gccatttttt cttccggata cgggttaagt gccgcacaag caatcaccac
      541 accatcacgc tcaataatgg tgtagtttgt gatttccatt tctaattgtt ctcgagagcg
      601 tttgactaaa atgccctgct gttcaagtgg gcggattaaa tccaataatc ccggaatatc
      661 actggaatta gcaatacgta cctgttccga gctttccatt gagaactgtg tgccaatacc
      721 atcacgagag aataactctt gaagcaatga gccatcttct ttatagctta ataaatgcga
      781 gcgtttcact ccctctcggc ataccgtgat cgccgcctgc aaaaaccgag ctttcggggt
      841 gtgatattcg ccacgctcga ttaactgctg taacaaggtt tcgccatctt gcggaagata
      901 atctggaatt ggcttgccgt tttcatctaa aatcccctgc tcttcacaaa aaccgattaa
      961 tttatcggca cgaagtttaa ttgcaacctg tgtggcaata tcttcaaacg gcagattaaa
     1021 catttcaccg gtaacagacg gggcaatcgg accaagtaat acaatcgaat tttgtgccag
     1081 ttgctgctta atgctctcaa tattaatacg acggatttta ccgcttagtg tataatctac
     1141 cccatccacc acgccaatcg gctgagctaa aatcatatta ccactgacta cattaatcac
     1201 ttcagaatgg ggtaaacgca aagaaaggcg ggcaaagaaa tcataatgaa ctttccctac
     1261 cgcttgtttc acatattcta gcgattgtgg attagtcaca cggatattgt ggtaatactc
     1321 cggctcaata tgattttgtt ttaacaattg gttaatttgc ggtcttgccc caaatacaat
     1381 cactaatttg atattcaggc tgtgcaggag actgatgtca ttgataatat tgacaaaatt
     1441 cgggctttcg ataacatcgc catcaagcat aatcacaaag gttttgcctc tgtgcatatt
     1501 aacataaggt gtagattgcc taaaccattg agctaatgcg agttctgtgt tttgcatata
     1561 tttcctcttt ataatataaa cgcatattat cttttttaga aaaatccgca agccttaaat
     1621 tgaataatta agcattatat ttgcataaat aacaaagccc tgaaataata tcagggcttt
     1681 atagattatg cttcagcttt ggttaaatct tttacttctg tttcaggtgt aactttttta
     1741 actgcttcaa tgcctttttg acaaccttgc ttagtcgtat aagcttggtt ggttgcaata
     1801 acttcgtggt tacccgcttt taaacgccaa cgaaattctt cttttgcatc tttgtaaatt
     1861 tcaaaataca tataaacact ccttcgtgtt gtgattgccc aaacactgtg tttgtgtcgg
     1921 gttagcttaa gctaaattcc ccaaaatatc aaagcaagcg gtcatttttt tacaaaaatt
     1981 tgcgaattaa tttaacgatt gcatcaactg ctcaacatcc gcaatttctt tagggcaacc
     2041 gctgcttaag tttttgttgc cgtattcggt aatcagcaaa ttatcttcaa tccgaatccc
     2101 aataccttta tattgctccg gtacatccgc atctttagga atatagatac cgggttcaac
     2161 agttaacacc ataccaatct gcaaaggacg atcccgctcc gtgccgtaat cccccacatc
     2221 gtgaacatct agccctagcc aatgccctaa tccgtgcata taaaattggc gataggcttt
     2281 ttgctcaatc aggctttcca catcaccgtt taaaattcct aagcgaacca agccctgcgt
     2341 gagaatctgt acagccttat cgtttgccgc tttaatcgag ctgtttggca caagaagatt
     2401 aatcgcctct ttttgcatag ttaaggttaa ttcgtacagc tctttttgcg gttcggagaa
     2461 tttcccatta atagggaagg ttcgggtaat atcgccggcg taatacgcaa attccgcccc
     2521 tgcatcaatc agtaataaat cgccgccttt aagcacctga tcattttcat tgtagtgaag
     2581 aatacaggca ttctcaccgc cggcaacgat tgaattatat gccggaaacc ttgctccaaa
     2641 acggctaaat tcgtgttgaa tttccccctc aatttcccac tcataacgat tcgggcgagc
     2701 ttgtttcatc gctcgaatat gtgccattga agaaatatga cacgcctgct gaattaaggc
     2761 aatttcaaat tctgatttaa tcaaccgcat ttccgataac attggctgcc aatcaatcaa
     2821 ggttgtcggc actttttgcc gattgacttt cattttttca aatgttgcaa acaaaatatt
     2881 atcgccccac tcttgtatcc ctaacgcaca ataacaagcg gtcagatttt ctaatttttt
     2941 tgcaagaacg gtttcaatgt catcaatatc aaaagctgcg ttaagctgta acgtttttgg
     3001 agcttcctca atccctaaac gtctgccatt ccaggtttcc attaaagggt cttttttacg
     3061 cacaaaaata atactttccg ttttaccttc gctttttacc agcaatacgg ctgatttagg
     3121 ttctgccaaa ccggttaaat accaaaagta actatcaggt ctaaacaagt attcagagtc
     3181 actattacgg cgtttttccg attcggtaaa aaccaataac gcagaattat cctgcatttg
     3241 ctcaagcaca cgctcacggc gtgcggtaaa ttcttcttgt ggcattttag ccaaataagc
     3301 gagatccatt atttctcctt tttattatat ctatatcgaa acctgcctta ttttagcaca
     3361 aacgcagcat aaattcagcc taaccaaaac agatgaaaga ttatatttga gatcttgatt
     3421 gcaaaaacaa aacagattaa gattaaatat aacctttaca tatctaaaca ggttatattt
     3481 aacctatgaa cacataaata atctactttt agctcaaaaa taaaatgaaa ctatcaagcg
     3541 aactacaaaa tcagataaac caactaaatc agttacgaaa acaggcactc aaacaagagc
     3601 aagacgagca gaaattgttt gaaaaaaata aaattgaaga tttgccacat tttggcacgc
     3661 agcttaatgc tcagaggaaa ctattaggca tagaattaac cacccttgaa atgcaaaccg
     3721 gcatttcaag ctctacccta aaacgcttat ttaaagaccc aagccaagtg aaatttcaga
     3781 caatttgtat tgtggcagaa acactcggct ttaatttatg tgcaattaat actcacaaac
     3841 aagagtaagc gtgacaatgt agtgattttg attactttgg gaagacaaaa aatcgggcta
     3901 aaagcccgat ttatcagaga aaagctataa atccaataaa gaaaggagtt cgttatcttt
     3961 acgatcgaca taatggtcgg attgaatttt acgaatggtt ctagatttgc cacgaataag
     4021 taaggtttca gtgctggcaa tattgcctct acgtttaatc ccttttaaca attcacctga
     4081 agtaatgccg gttgcaacaa agacgatatt gtcatcacgc accaaatctt ctaatttcaa
     4141 caccgtattc accggtacat tcatttcatt acagcgtaaa agctcttttt cggtagcagt
     4201 taaattttcc gggctattcc ccttcacttg gttgcgagga attaaacgtg cttgcatatc
     4261 gccacccaat gcacgaaccg cagcccccgc cactacccct tcaggtgctc cgccgatacc
     4321 ataaagcaga tccaattcgc tctctggcaa acagcattgc accgcagccg caacatcgcc
     4381 atcaggaatc gcaatcactc ttacccctaa tttttgcaca tcggcaatta ttttttcgtg
     4441 gcgaggctta gcaagatagc aatggttaat tgggaaagta atttgccctt tttcgaggcg
     4501 acacggcgaa gattttgttc aagcggaaga tttaaatcaa tcattccttt gcattcctgc
     4561 cccaccacta atttttccat atacatatca ggggctttta aaaaggtttc tttgccgcct
     4621 gctgctaata ccgacaacgc atttgcctgc cccattgcag tcatacgagt accgtcaatc
     4681 gggtcaaccg caatactgat ttcctcatct tctaggcggg atagaccgat tttctcgcca
     4741 atataaagca tcggtgcttc gtcaatttcg ccctcaccaa ttaccacttc gccacggatt
     4801 tccatttggt tcagcataaa ccgcattgct ttcaccgcag cttcatcagc ggcattttta
     4861 tccccacggc ctagccaaga gtaagctgct agagccgctg cttccgtaac acgagaaaat
     4921 tcaaaagaaa gagttcgttt catttttgtt ccttagtttc ttgaaagaaa aactttaaaa
     4981 gaagagagat tatattttat cagtaacctg caagctacgt tactaaaaaa tcagcgtttg
     5041 aataaaaatt cacaaatagc caaacttttt tataaaaata aagtcagatt tag
//
LOCUS       DANLXK010000155         5017 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.156, whole genome shotgun sequence.
ACCESSION   DANLXK010000155 DANLXK010000000
VERSION     DANLXK010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..581
                     /locus_tag="PXD88_002371"
     CDS             <1..581
                     /locus_tag="PXD88_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL6281900.1"
                     /translation="TTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGKK
                     DFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGVR
                     MAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVII
                     AVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
     gene            665..1435
                     /locus_tag="PXD88_002372"
     CDS             665..1435
                     /locus_tag="PXD88_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL6281901.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(1516..2646)
                     /gene="nrdB"
                     /locus_tag="PXD88_002373"
     CDS             complement(1516..2646)
                     /gene="nrdB"
                     /locus_tag="PXD88_002373"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL6281902.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(2673..4943)
                     /gene="nrdA"
                     /locus_tag="PXD88_002374"
     CDS             complement(2673..4943)
                     /gene="nrdA"
                     /locus_tag="PXD88_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL6281903.1"
                     /translation="MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELR
                     SHIQFYEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL
                     YEHVKKLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNR
                     VSGEIYESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTP
                     TRQFSSCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMD
                     YGVQINKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRK
                     VKAVELFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLA
                     HFYDEQGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSL
                     NRRALGVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACA
                     YFDQTTYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSET
                     SSQISNATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLV
                     GIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAED
                     VQDDLDEGCAGGACKI"
BASE COUNT         1559 a         1052 c          921 g         1485 t
ORIGIN      
        1 ataccactat tatgcaacgc atttcaggtg caaaacagat agattcactc acggttaaaa
       61 ttaaagatga tattgaaagc caaactgccg aaaaaagcat tgccgaattg ttagtagcta
      121 aacacggcaa aaaagatttc tttattatga atagtgatac gatcaaacaa accattacca
      181 gtaccaccaa tacaatgact ttgctgatct cctctatcgc ccttatttcg ctgattgtcg
      241 gtggtatcgg ggtaatgaat attatgctcg tttccgtcac cgaacgcacc cgagaaattg
      301 gtgtccgaat ggcgattggc gcaaaacaac gcaatatttt gcaacaattt ttaattgagg
      361 cggtggttat ttgcctaata ggtggtgtga ttggcatttt actggcaagc gctattattt
      421 gggcatttaa taccttaggt acgaatttta aaatgatgct ttcaccggaa tcggtgatta
      481 ttgccgtgct ctgctctaca cttatcggtg tggtatttgg ctacattccg gcaagaaacg
      541 ccgcccaatt aaacccaatt actgctctgg cacaagagta aatgcgataa ctatctgcta
      601 cactgtaggg gcaaaaaatt ttttgcccct acatccatta ttatgccaag tttaaggaga
      661 taaaatgaca ataaccaata ctgaactaga acaaattctg aacaccaaac tcaacagctc
      721 cgccattaac gactatgccc caaatggctt gcaagttgaa gggaaaagag agatcaaaaa
      781 aattattacc ggtgtgacag ctacacttcc cctgattgaa aaagcgattg agaaaaacgc
      841 cgatgcaatt ttagtccacc acggttattt ttggaaaagt gaaaacccgt gcattcgagg
      901 aatgaaaggt aaacgcatta aacagctttt agtgaatgac atcaatctct ttggttatca
      961 cctaccactg gatattcact ccgaactagg taacaacgcc cagcttgcta agcatttagg
     1021 agtaaaaaat ctacaaggtt tagaagacag acctaattca attccaatgt acggtgaatt
     1081 agaaaatccg atttccgcca atgaactgaa acaaaaactt gaaaaaacgt tacaacgcac
     1141 cgttatttta tgtgatgaat ttgttcatag cccacaaaaa atgattaaaa caatagggat
     1201 ttgctccggc ggaggacaag gctatattga tttagccttt gaaaaaggct gtgatgcctt
     1261 tattagtggc gaaatttccg aacagaccac tcactctgcc cgtgaacaag gaatctatta
     1321 ttttgcttgc ggtcatcacg ccacggaacg agatggcgta aaagccttag gtgaatggtt
     1381 agccgttgaa tatggtttag atgttgaatt tattgatatt gataaccctg cataaaaaat
     1441 acaagcggtt gaatttcctg aaaattttgc aatttgcaaa aaatcactaa aaatcaaccg
     1501 cttgtatatc atagtctaaa gttcaaaatc gccaaaatca cggctatcta ctttagcatc
     1561 aatctggcca accaaataag aactgacttc cacttcttgt ggtgctacct gtacattatc
     1621 ggaaaccaac cacgcattga tccacggaat ggggttggaa cgtgccttaa atggtaatgg
     1681 tagtccaaca gcctgcatcc gaatattagt gatatattca atatattgca ccaaaatatc
     1741 ccgatttagc cctatcatcg aaccgtcttt aaacaggtat tccgcccacg ctttttcttg
     1801 ttcagctgca cttaaaaaaa gctcgtaggc ctcttggcga cattcacgtg caatttctgc
     1861 catttcagga tcatcattgc cataggccat aatattcaat atatgctgag tgccggtaag
     1921 atgtaatgct tcatcacgtg caataaattt gatgattttg gcatttcctt ccataagctg
     1981 ccgttccgca aaggcaaatg agcaagcaaa agagacataa aaacgaattg cttcaagcgc
     2041 attcacactc atcatacaga gataaagttg tctttttaga ctacgcaaac tgacctcaca
     2101 ggtttttcca tcaacctgat aactgccttc accatacaaa ctatagagtt ggctgtcacg
     2161 aatcaaatca tcataatagg cggaaatatc tttggcacgc ttaataattt cttcgtttgt
     2221 gacaatatca tcaaatacta ttgatggatc attgacaata ttacggatga tatgtgtgta
     2281 agaacgactg tgaattgttt cgctaaatgt ccaagtttca atccaggttt caagctcggg
     2341 gatagacact aatggcaaaa gcgccacatt cgggctacgc ccttgaatgg aatccaacaa
     2401 ggtttggtat tttaaattgc tgataaaaat gtgcttttca tgttcaggca gttgggcata
     2461 gtcaatgcgg tcttgtgaca catccacttc ttccggtcgc cagaaaaatg agagttgttt
     2521 ttcaatcagt ttttcaaaaa tttcgtattt ttgttgatca taacgcgcca cattcacatt
     2581 ttgtccaaaa aacatgggtt cttttagttg atcattttta tgttgtgaaa acgtagtata
     2641 tgccatgtta ttctccttta tttctgttct tattaaattt tacaagcacc accagcacag
     2701 ccttcatcta agtcgtcttg cacatcttct gctccatcac gggtattttg atagtaaagg
     2761 gtttttaacc cgtatttata cgccgttaat agatctttta ataatacttt catcggtact
     2821 ttagcttctg caaagcggtt tgggtcgtaa tttgtattcg ccgaaatcgc ttggtcaaca
     2881 aatttctgca taatcccaac caaatgcaaa tatccgtcca tattaggaat atcccaaagc
     2941 agttcatagt atgcttttaa acgttcatac tccggcacaa cctgctttaa aataccgtct
     3001 tttgatgctt taacactaat atagccacgc ggaggttcaa ttccattggt ggcattcgaa
     3061 atttgcgacg aagtctccga tggcattaag gcagttaaag tggaattgcg caagccaaat
     3121 tgcagaatat cctgacgtag ttgttcccaa tcataatgaa gcggttcttg agttaattca
     3181 tcaatttctt ttttataagt atcgataggg agtaaccctt tggcataagt ggtttgatca
     3241 aaataagcac acgccccttg ttctttggct aaattcatcg atgcttttaa taaataatac
     3301 tgaatcgctt caaaggtacg gtgagttaaa ttattagcac tgccatcgga ataacgcact
     3361 tggtttttag ctaaatagta agcatagtta atcacgccta cacctaatgc gcgacgattt
     3421 aatgagctgt tacgtgcagc taataccgga taatcttgat aatctaatag ggcatctagc
     3481 gcacgaacca ctaaatcagc caattcttct aactcatcta aattgctgag tgtgcctaaa
     3541 ttaaatgccg ataatgtaca taatgcgatt tccccttgtt catcataaaa atgtgccagt
     3601 ggcttagttg gcaaagcaat ttctaagcag aggttcgatt ggcgtatcgg tgcgacacga
     3661 ggattaaatg ggctatgagt attacaatga tcgacattct gaatataaat tcgccctgtt
     3721 gaagcccgct cttgcatcag taatgaaaac aattctacag ctttaacttt acgttgccga
     3781 atgctcggat cttgctcata ttgcaaataa agttgctcaa atttagcttg atcagcaaaa
     3841 aacgcttcat ataaccccgg cacatctgat ggactaaata aactaatctc accgccttta
     3901 attaaacgtt gatacatcat tttattaatc tgtaccccgt aatccatatg gcgagcacgg
     3961 ttttcttcca caccacggtt attttttaat accattaagc tttctgcttc caaatgccaa
     4021 atcggaaaat acacggtagc cgctccaccg cgaacaccac cttgagagca agactttact
     4081 gcagtttgaa aatgtttata aaagggaata cagccggtat gaaatgcttc tccaccacga
     4141 atggggctac ctaatgcccg aattgcgccg gcattaatac cgatcccagc acgctgtgaa
     4201 acatatttaa cgattgcagc cgaggttgca ttgatggaat ctaagctatc atcacactca
     4261 attaacacac aggaactaaa ttgacgagta ggtgtacgca ctcctgccat aatcggtgtt
     4321 ggcaaagaaa ttttgaaagt ggaagtcgca tcataaaaac ggcgaatata atctaagcgg
     4381 cttgctgttg gatacttaga aaataaacag gcagctacga gtaaatacaa aaattgagcc
     4441 gattcataaa tctctccgct aacacgattc tgcactaaat attttccttc caactgcttt
     4501 actgctgcat aggaaaacgt catatcccgc cagtgatcaa taaatccatt cattgtctcc
     4561 cattcttcgg gcgtatagtc gctcagcaag tctgcatcat atttacctag cgcaactaat
     4621 tttttaacgt gctcatataa atgcggtggc tcaaattgtc cataagcttt tttgcgtaag
     4681 tggaaaatcg ccaagcgtgc ggctaaatat tgataatctg gcgtatcctt agtgattaga
     4741 tcagctgcag ccttgataat agtttcatga atatctgaag tgcgaatacc ttcataaaat
     4801 tgaatgtgag aacggagttc tacttgtgaa acagaaacat tctctaaccc ttctgccgcc
     4861 caagtaatca cacgatgaat tttatctaga ttgagttgct cgcgcgtgcc attacgcttt
     4921 gttaccatta aacttttatt cataattatt aaccctttat aaaatacctt agtaaaacac
     4981 tacatcttgt gtttttcatt aaagtaaaca caagata
//
LOCUS       DANLXK010000156         4934 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.157, whole genome shotgun sequence.
ACCESSION   DANLXK010000156 DANLXK010000000
VERSION     DANLXK010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(33..2222)
                     /gene="yccS"
                     /locus_tag="PXD88_002375"
     CDS             complement(33..2222)
                     /gene="yccS"
                     /locus_tag="PXD88_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL6281904.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2266..2724)
                     /locus_tag="PXD88_002376"
     CDS             complement(2266..2724)
                     /locus_tag="PXD88_002376"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL6281905.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            2850..4124
                     /gene="thrC"
                     /locus_tag="PXD88_002377"
     CDS             2850..4124
                     /gene="thrC"
                     /locus_tag="PXD88_002377"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL6281906.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4203..4922)
                     /locus_tag="PXD88_002378"
     CDS             complement(4203..4922)
                     /locus_tag="PXD88_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL6281907.1"
                     /translation="MTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLPGAFTP
                     TCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPDGNGEF
                     TEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTMIKYLS
                     PNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITGKTSVP
                     QVFIGGKYIGGSDELAAYFAK"
BASE COUNT         1448 a         1128 c          997 g         1361 t
ORIGIN      
        1 atgtcacatt ttatgattta attataggct cactacctta cactcttgag ctgtaatata
       61 ctatttaact gcggtaataa ctgcacgatc agtctgagtt gttgtatcaa cactaaggcg
      121 aggtcatttt gcttttgctg attttcttgc tcaaattggg tgaggtcttg gtcgatagcg
      181 gtcaattttt ccgataattt tgcaaatgaa cggctctctg aggcaatttg cccgatgatg
      241 tttgccacct ctctggcgtg tgagaagaac attgcggaaa aatccacttg ttgattaatc
      301 tctcggctag caatacggta agcccctaag gtggaaatat aacccagcaa ggtgtaagca
      361 atacctaaca attttggggc gaaggttaaa tcgttcgcat atttttgtgg ttcgctgtac
      421 atattggtaa tcgcattact cagtgccgat aaatggttat gcacatcacg gcgggcaata
      481 cggtaaggca gttgctcgtt ataaccaaac tgcaactggg cgataatatg gcgtaaatat
      541 tgcccactgg ctttcaagcc gttatgtaag ttacgttgta aatttaaata cttccaatcc
      601 ggccataaga atgccactgc cagccacgca atcgctgtac ctagtaaggt atcaagcatt
      661 cgcattaaga tgccgctttc aaggctcacg cctgcaatat caaggcttat cattaccaac
      721 acagtgatat aaaaggttga aaagccataa tgtaccaagc ggaaaaaggt ataaagcgaa
      781 ccggtcagta cgattagccc aagctgggct tcgaggctga gcgccacgtt aaacagttca
      841 aaagagccac caaccagcac gccgaaaatt gtgccgatca cacgctgaat cagtcgggtc
      901 ttagtagcag tgtaattcgg ttggcagaca aaaatggctg tgagtaaaat ccagtagcct
      961 ttgctatcaa agcctaaaat cggcacaatc gcactgcaca acagcaccac tatcgacaac
     1021 cgaacggcgt gtcgaaacag ttgggattca aaggttaaat gggctttaat tgcttggctg
     1081 atattgctta agccggtaat attttcggcg atcaagcggt gagattttgt gaaattttta
     1141 cttaacggtt caatatgctc accactgctt gagccttgtt caatctgggc tagttgccgc
     1201 tcaatattgc ctaaattttc tgcaatagca cgccagcgat aagcactttt caagccccgt
     1261 tcttgatgat aattcaatga attaagcaag ccctgcaagg ctttttcgcc acgaacgccg
     1321 tgttcatata cttctctatg gcgtaacgac attgcaattt tttgacacgc cgcagcctgt
     1381 aattccagca cccgttgaaa gcggaacatt aaatcactgt tacttaattg ttggaacagt
     1441 tcgtgatatt gataatggct ggaacttgcc cgctctaaaa tatcttgagc ggtgaaatag
     1501 taacgcaaca ttcgctgtgt ccgttgctgc ttgtgctggc ggcttaggcg gtagaatagg
     1561 gcaactctgg ttttatcaaa ggcagccatc acctcactat tggctttcgc caaggctagt
     1621 tgtttggcag ctaaatcgtc atcatcaggg tcaaaatagg cagatttcgc cagtaaataa
     1681 tggctcaacg caaggtaggc ggacgctaaa ttctcctgca cggttcgatt cgggaaaatc
     1741 aggtacacca aaataccgac caaaccatag agtaaggtgc caagtaagat catcaccaca
     1801 ttgtgatacc acaatacttc gggcgtataa gccaggctgt tataaaccgc cacaatcagc
     1861 gtgccaaaag caatggtact atagcgttgc ccgattgccc ctaacattac cagcaaaaag
     1921 gtgcaaacca ccgccaccgg cacaaacagc cagcccaaat ggagcgacac actcgcccca
     1981 atcgaggaaa gcgagaacgc cactaggctg ataatcagat ttttcgctcg tccgattagg
     2041 ctgttgtcta aatccaccaa accgccggcg ataatgccta acatcaacgg catcgcaaaa
     2101 tcagaaatac cgagctgcca aatgctgacc gccgcaatgt ttagcgaaat aaacatcggc
     2161 agggttttaa ttacattttc cgaaagccaa ctgtgttgta gatatcttaa aaatttattc
     2221 atatttgctc atttcgggca ggcacaggac ctgcccctac ctacactacc ccaaacgttc
     2281 tgccaaatag ccatcataat ccggcacatt cacgctgatt gcttgattga acaaatccgc
     2341 atttaacaga aaattagcgg tggtttcgtt aatcgccacc ggaatattcc aaacggtcgc
     2401 aatccgcatc agggctttca catcaggatc gtgcggagcg gcattcatcg gatcccaaaa
     2461 gaacaccagc agatcaattt tcttttctgc gatcagcccg cctaattgct gatcgccccc
     2521 catcgggccg cttaacaatg aagtaatttc aagccctgtt tctctggcga gcaaatgccc
     2581 ggtagtgccg gtggcatata gcttatgcga ggcaagttgg gcttgatgag tttgtgtcca
     2641 acgaattaaa tcttgtttac agctatcgtg agccactaag gcaatctgtt tttgttttgc
     2701 gatggttctg acggtggttt tcatttttag ctcctttgca aaatttttca caaatcatac
     2761 cgcttatttt tcgcttttgc attgactaat cacggcttat ggctaaaatc aggtaaaaat
     2821 tcgcatttta aaacaaagga ttaaccgcaa tgaacttata caacatcaaa caccctgaag
     2881 aacaagtcaa tttcgcccaa gcggtacgcc aaggcttagg caaaaatcaa gggctatttt
     2941 tccctgaagt gttacctaaa ttagatagca ttgatgaatt attggattta cctttggtta
     3001 aacgcagcca aaaaattctt tcagccttaa tcggcgaaga gttaccgcaa gaaaccttaa
     3061 atgcaatggt aaaaaatgcg ttcactttcc cggcaccgct tgccaaagtc aatgatgata
     3121 tttatgcgtt agaattattt cacggtccga ctttagcctt caaagatttt ggtgggcgct
     3181 ttatggctca agccttagcc aatgtacgag gagacggcaa aattactatt ttaaccgcta
     3241 cctcaggtga caccggtgcg gcggtggctc atgctttcta tggtttggaa aatatcaacg
     3301 tggtcattct ttacccgaaa ggcaaaatca gcccattaca agaaaaatta ttctgtacct
     3361 taggcggtaa tattcgcact gttgcgattg aatccgactt tgatgcttgc caagccttag
     3421 tgaaacaagc ctttgatgat gccgagctac gccaagcgat tggtttaaat tccgcaaatt
     3481 ccatcaacat tagccgttta ctggctcaaa tttgctacta ctttgaagca gttgctcagt
     3541 taccaaaaga aaaacgagat aacgtagtgg tttcagtacc aagcggtaat ttcggtaact
     3601 taaccgccgg cttaattgcc aaaacattag gtttaccgat taaacgtttt attgcctcaa
     3661 ccaatgccaa tgacaccgtg ccacgctatt tacaatcagg caaatgggaa ccaaacgcaa
     3721 ccgttgcaac cctttctaat gcaatggacg taagccgccc gaacaactgg ccacgagttg
     3781 aagaattatt taaacgcaat ggctggagtt tgtctgaatt gggttctgcc gcattaaacg
     3841 atgccgaaac cgaagcggct ttgaaagctc aatatgcaga aggttatctg tgtgagcctc
     3901 acggtgctat tgcttaccaa agcttgaaag atcagctaca acaaggcgaa accggtattt
     3961 tcttatgcac cgctcacccg gcaaaattca aagagtcggt ggaacacatt ttagcgattg
     4021 aattgccgtt accggaagca ttagataagc acaacaaact gccactgtta tccgatgaaa
     4081 tggcagcaga ttttgcaaca ttgcgtgcat atttgttgaa ataaatattc aataatagaa
     4141 aagggattaa gtattaaact taatccctct ttttatgcat tacaagcggt tatatttgcc
     4201 tattattttg caaaataagc agctaactca tcactaccgc caatatattt accgccgata
     4261 aatacttgtg gcacagaggt tttacctgta attgctcgta cagaaattgt gcttgcatca
     4321 cgacctaaca caatctcctc aaaagtatag ccttgctctt ttaataatgc ttttgctttt
     4381 gcacagaaca ggcaacccgg tttagtgata atcgaaacag actctttagc tgtccaattt
     4441 ggacttaaat atttaatcat tgtatcggca tctgatactt taaacggatc gcccggttct
     4501 tgtggctcaa taaacatttt ttccacaata ccgtttttca ccagcatcga ataacgccaa
     4561 gaacgtttac caaacccaag gtcattttta tcaactaata gccccatacc ttctgtgaac
     4621 tcaccattac catcaggaat aacagtaata ttttcagatt cttgatctgc tttccaagcg
     4681 ttcattacaa aggtatcatt aactgacata cagatgatat catctacccc taatgcctta
     4741 aattcacaag ctaattcatt atagcgaggc aaatgtgttg atgaacaagt cggtgtaaat
     4801 gctccgggta atgaaaacac aaccaccgtt ttgttattaa ataactcatc ggttgtgaca
     4861 tcaacccaag catcgttttg acgtgtacga aatgttacac tgggtacttt ctgacccgtc
     4921 atatctttaa aaga
//
LOCUS       DANLXK010000157         4876 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.158, whole genome shotgun sequence.
ACCESSION   DANLXK010000157 DANLXK010000000
VERSION     DANLXK010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(82..648)
                     /locus_tag="PXD88_002379"
     CDS             complement(82..648)
                     /locus_tag="PXD88_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281908.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILERNEIYQKKFDLVN"
     gene            complement(1181..1507)
                     /locus_tag="PXD88_002380"
     CDS             complement(1181..1507)
                     /locus_tag="PXD88_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281909.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1555..3186
                     /locus_tag="PXD88_002381"
     CDS             1555..3186
                     /locus_tag="PXD88_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL6281910.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            3101..3994
                     /locus_tag="PXD88_002382"
     CDS             3101..3994
                     /locus_tag="PXD88_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6281911.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            3987..4850
                     /locus_tag="PXD88_002383"
     CDS             3987..4850
                     /locus_tag="PXD88_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6281912.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLTLKEVCDIQ"
BASE COUNT         1612 a          932 c          938 g         1394 t
ORIGIN      
        1 ttaccctaaa tctacaaata tcaagtgtaa aaaaatataa aagtcggcaa taacattatt
       61 ttataataac taatgtgaat tctagttcac taaatcgaat ttcttttggt aaatctcatt
      121 cctttctaat atatagcgtt ttacctcatc atcgtaaaac cattcaagaa agttatcaac
      181 atcttcaatg aacttttcta cctgttgctg tgcatatgct atcgtatcgg tagggaagat
      241 ttgataatga aacggattgc gttcatcata actctgccat ttgtcataat cggcttgttt
      301 acgccgcgct tctcttgcct cccagtcgat tttttcttcc acttgatatt ctggctctgg
      361 cttattatac aaaatacgga tgagttcctt ttcttcatcc tcaagcagaa tatcttcaaa
      421 ccagatttca gaaaataggc tgcgcttgaa aatgaaagac ttcatcattt cccctccaca
      481 cgccaataag tttcccaatg cttcccgttt cgctctatct tttgccgaaa atatccagtt
      541 tttcgataca aaacagtaca ttggcatgtc atgcaaatag gttcttcgtg aaatggctaa
      601 ttcaggaaaa tgaggaataa gctgtaaccc cattattaag ccttccatac tgcacacgat
      661 cttacttaat tgtccgtaat cgcgtaaaaa agcaatgtca gtttttatca accacaacga
      721 taggctgact aatatgaaca taaagatgag ataatagatc ggttttaagg ctaaggcgcg
      781 ccgacaaagc cacattaaga gtggaatcgt aacgagatca aagaaaaatg atgagtctat
      841 gatgatttcc ttatgtgagt tgatgaataa tcaggcatga aggaaacctt aaaaaggaaa
      901 agtcccttca ttaccacttt ttaaaacctt ttaaggctta aaaatcaaaa gtcgtaatga
      961 agggactatt gtccgtgggc aaaaaggtat tagttatagg gggctttgtc aagcgaaaat
     1021 ttactgtgca ttttctcgcc aaaactgatt taagccttga taaaatctcg aaagtacctt
     1081 gtcaagaaaa atctttttag tggtttgatt gctagttttt tgagcaaaac tatgctgtaa
     1141 tgcagtaaaa atacagtttc tatctgtgtt tggaatccag ttacaaattg gagagtaata
     1201 caaagcatat ttgcttgagc atctcagcat cttggtagca ttcttctgat tttgaaatat
     1261 cccaaacaag ctgccgtaca catgatgaaa ttctcattaa cgccaataaa tctaggctac
     1321 ttggcaatct tttccctgca acccaatctt taactgtttt ctcactcaca tctaatgcat
     1381 tggcgaccat tttccccgtc caatattgag catgcatttc ctttcgtaac gcaattgcaa
     1441 accgctcttt cgtttcaatc tcattgagtg taattttggg taagatttta ccctttgagt
     1501 gcaacatatt tcctcccgat tcctttatat tggtgtagat aaggagtcat tagaatggtt
     1561 acacgtacaa agaatcaacc taaaaatcag gcggtttcct acattcgaat gtcaacggaa
     1621 caccaagaat tttcaccaga ccttcaacgt tgctttatcg aaaattatgc taaagaaaat
     1681 gggctagaaa tcattagaga atacattgat gaaggaaaaa gtgggctaac cgcagaacac
     1741 cgcccacaat tcctttcaat gatacaactc gtacaaagtg gacaagccga cttcgatcat
     1801 attttggtgt atgacgtgag tcgttggggt cggtttatga atattgatga atcggggcat
     1861 tatgaactga tttgtaccta ccaaggcatt aaagtccact attgcgccga gccattcaaa
     1921 gggaatgata ttgcctctca aatatataaa accatgaaac gtttgtcggt aggagactac
     1981 tgtcgtgaac tcggagtgaa agtatttaac ggtcaaaaaa atctgatcca acatggattt
     2041 agacaaggtg gggtagctgg atttggattg cgtaggagat tgattgactg tcaaggaaac
     2101 cctaaatttg atctccaacg tggagataga aagagcctac aaaccgacag agtgattttg
     2161 gttgcaggcc caaaggaaga gcaggaaatt gtccgacaaa tttaccatga ttttgtttat
     2221 caacataaaa cggaacaaca aattgctgat agcttaaatg cacaaggcat tgttactgat
     2281 agaaatacag catggacgaa aggcgtagta catcaaatcc ttattaacga aaagtatgtc
     2341 ggccacaatg tttggaataa acgtagtgca tcaaaaacac gcgaatataa aggtaaaaac
     2401 cccgtagaag agtgggtgcg agctgagaat gtatttgaag ctatcgtgcc acaagcctta
     2461 tttaatgcag cccaaaccat tattcatcaa cgctccgccc gattatctga cgatgaaatg
     2521 ttagagcaac tcaagctact tttgaaagag aaagggaagc tgtctggctt gatcattgat
     2581 gaagccgaaa attgtccatc aagtagcgcg tacagtagcc gatttggaag cctacttaac
     2641 acatatactt taattaacta tgaacccgaa cgggattacc actatgtaga gatcaaccga
     2701 ttactccgtc agcagcataa aaatttcgta caacaaacac ttgataccat tattgaattg
     2761 gggggagtgg ttttgagcga tgatgtaacc gatttagtcc acatcaataa tgaatttacc
     2821 gcctcaatcg tattaagtcg ttgtcgccta acgccatcag gaagcaaaag atggttgatc
     2881 cgatttgata ccagtttaaa tcccgacata acaattgcag tgcgcatcaa tgagagtgcc
     2941 acagaaattc ttgattacta cctgcttccc acaactgaaa aggtaaatga aaaactacga
     3001 ttggctgaga gtaatcctgc cgaacttgaa atctaccgcc atgataattt agatcgcttt
     3061 tttattatgg ttgaacgtat tttagtcaag gagtttatct atgcaaaacg acaccattca
     3121 aattcttcct atcgacaaaa ttcgggtact caatcccaga acgcgcaatc agaaagtctt
     3181 tgctgatctg gtcgaaaaca ttgcaacgat tggtctcaag agacctatta ccgtaacgcc
     3241 atctgtcgat agtgctgaat attatgattt gttatgcggt caaggtcggc ttgaggcttg
     3301 tcaggtgctt ggtgagctat tcataccttg tcgcgttgtg aacgcaaata gtgaagaaag
     3361 ctacttgatc agccttgtgg aaaatattgc cagacgtcag cattcctata tggagctgct
     3421 ttcaggcatc aaaatactca atgatagagg ttataagccc gttgatattg ctcgcaaaat
     3481 cggtttctca aaaagccatg tcaacagtat cttacacctc atcaatgctg gggaagagcg
     3541 ccttatcaat gcggtagagc aaggaatttt acccattacc atcgctattt cgatttctcg
     3601 ttcagacgat caggaagttc aaaaacaact cgcggaactt tacaccaatg gtacattgaa
     3661 aagcaccgat attgccaaaa tacgtaacct gatccaccgt agaaatcttg ctggtaagaa
     3721 agccaataca ggtatttctg gaagtattag atcatctatt tataatccca aaactgtggt
     3781 gaatatctac aaagaggaaa cggaaagaca gaaaatgatg atcaagcaag cggactatga
     3841 tgaaaaacaa ctctctatta tcttgtcttg cttaaataaa ctctttgagg acaaatactt
     3901 tcaactcgtc cttaaatcag aacatttaga cgatatgcca aaagatttaa gccaacgaat
     3961 gttaaaacaa cgagagggaa atatttatgc ctaaacatat tacttatgcc tttcataatc
     4021 agttaatttc gcttccaatt gatgagatta ttccattaaa aaagatggat aaaaattttg
     4081 agaaaagcac taagttccaa agcattctgg cttcaattcg tgaaatcggg attgttgaac
     4141 ctgtggtcgt ctatccagaa gaaaacaacc aatatatttt gttagatggc cattctcgtg
     4201 tacatgcact caaaaagcta ggtgtggata aggtgctttg tatgatttct accgatgatg
     4261 aaggctttac ttacaacaag caaattaacc gcttaaccgc cgttcaggaa aataaaatgc
     4321 tgatgaaaac cattgagcgc ggggtttcgg atgaactgat cgcaagaaca ctcaatatca
     4381 atctaaaagc actacggcag aaaatgaata tgcttaatgg gatcacaaga gaggttgttg
     4441 atatattggc caataagcag gtcagtaaag agatatttcg gattttgcgc aagatgaagc
     4501 ctgaacgcca aattgaagtg gcacaaatga tgatcgccag taataagttt acattgacat
     4561 acgccaatat gatgttgctc agttcacgca aggaggaatt agtcgaaagc cacaagtcta
     4621 aaaccacgaa tgatgattta accgatcttt ccattatgca aaaagagcta gagcgactta
     4681 aagagaacta taaaatttcc gaagagaaat tggcggactt aaaaatggga ttggttgtgg
     4741 cgaaagggta tgtcaaaaaa ctattgaata atgctgccgt ggtagatttg cttgaaaatg
     4801 atcagagtga aatctatctt actcttaaag aagtatgtga tattcaataa tataatatct
     4861 agctaataac cttaat
//
LOCUS       DANLXK010000158         4813 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.159, whole genome shotgun sequence.
ACCESSION   DANLXK010000158 DANLXK010000000
VERSION     DANLXK010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4813
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            12..470
                     /locus_tag="PXD88_002384"
     CDS             12..470
                     /locus_tag="PXD88_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL6281913.1"
                     /translation="MLLSVTVNAAPVELHQFDSPKQESDYRALIQELRCPQCQNNNIA
                     DSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPATIMLWLLPLI
                     LIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEEK"
     gene            467..1378
                     /gene="ccmI"
                     /locus_tag="PXD88_002385"
     CDS             467..1378
                     /gene="ccmI"
                     /locus_tag="PXD88_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL6281914.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1375..1980
                     /gene="mog"
                     /locus_tag="PXD88_002386"
     CDS             1375..1980
                     /gene="mog"
                     /locus_tag="PXD88_002386"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL6281915.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            1990..2328
                     /gene="glnB"
                     /locus_tag="PXD88_002387"
     CDS             1990..2328
                     /gene="glnB"
                     /locus_tag="PXD88_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL6281916.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2409..2888
                     /gene="lspA"
                     /locus_tag="PXD88_002388"
     CDS             2409..2888
                     /gene="lspA"
                     /locus_tag="PXD88_002388"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL6281917.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            2899..3843
                     /gene="ispH"
                     /locus_tag="PXD88_002389"
                     /gene_synonym="lytB"
     CDS             2899..3843
                     /gene="ispH"
                     /locus_tag="PXD88_002389"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL6281918.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            3843..4091
                     /locus_tag="PXD88_002390"
     CDS             3843..4091
                     /locus_tag="PXD88_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL6281919.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            complement(4298..>4813)
                     /locus_tag="PXD88_002391"
     CDS             complement(4298..>4813)
                     /locus_tag="PXD88_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6281920.1"
                     /translation="SANQYIFNSDWFTHNVPSLASIFEYVKPRRILEIGSFEGRSSVF
                     FIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIEQRFIHNVTLAQQKFQNVVLYKH
                     RGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLFDALLAHRLVRKGGVISFDDYLW
                     SPDETGKQRHY"
BASE COUNT         1513 a          974 c         1042 g         1284 t
ORIGIN      
        1 tcagcctaat aatgcttcta agtgtaacag ttaatgctgc tccggtagaa ctgcaccaat
       61 tcgacagccc gaaacaagag tcggactatc gtgccttaat tcaagaactg cgttgcccgc
      121 agtgtcaaaa taataatatc gccgattcca atgcgactat tgccaccgat atgcgggcaa
      181 aaaccttaga attgctcaaa caaggcaaaa gcaaagacga agtggtggat tatatgattg
      241 aacgctacgg caatttcgtc acttacgacc cgcctctcac accggcaacc attatgttat
      301 ggctgttgcc gttaatttta attgccttag ggctgggggt ggtgttgcgt agaaagaaaa
      361 acaaaccaca agcggtcaat tttgagcaaa atactgcaaa accgaccact catctcgctc
      421 aagatgagca agaacgtctt aaccaaattc tcaataagga agaaaaatga atttctggct
      481 ggcaattatt ttcgttacac tgattgtatg tggcgtggcg ttttatccgt tacttaaaaa
      541 gaacaagcaa atcgataaca ccaagcgaga cagcttaaac aaagccttct attttgaccg
      601 cttaaaagaa gtggaaaacg aagcgaatga aggggtgatt gatgaccctg aacaaaccaa
      661 attagagcta caaaaaaact tgcttgatga tattccacac agcacacaaa gtgccacaag
      721 tgaaaaatta acgctcggca agtcgtggtt tgtggcattg attttatttg tcggcggtat
      781 cagctttgcg atttacagca atgtcggttc ttggttctcc aactcaatgt tagacaccac
      841 tcaccaaaaa ttagacagct tctatgagcg tttaaaaacc gaagagacca atccgctctc
      901 acaagaggaa atgaaccaat ttgcgatggc attacgggta gatttacaaa gtaatccgaa
      961 tgacgacaaa aaatggtata tgctcggtca aatcgggatg gcgttagatg atggtcagct
     1021 tgcacacgat gcctttagca aagcggctca actcaagccg gataacttag attacaaact
     1081 cagccacgcc caactgctgc tcttttccga agcacaggaa gacaaaaaac agggtgaaac
     1141 cttgttaaaa gagattatcc gccaagacca cacaaacttt aatgcgttaa gtttattggc
     1201 gttccactcc tttgaaaaag aagatttcaa aatggcggca atgacgtggg gaatgatgtt
     1261 aaaactactg cctgatgaag atcctagcaa agtaacggta gaacgcagtt ttaatatggc
     1321 gttatccaat ttaagtgagg cggaaaaaca agaattgcaa aaaggtgaga aaaaatgacc
     1381 gcttgtaaac cacttagcaa agagaagttg aaaatcggct tggtgtcggt ttcagaccga
     1441 gcctcgcagg gggtttattc agaccaaggc attcccgaat taagggcgtg gcttgaatct
     1501 gccttaaccg agccgtttga gctggaaacc cgcttaattc ccgatgagca agccattatt
     1561 gagcaaacct taatcgagtt agtcgatgct cacgcttgcc atttggtatt aaccaccggc
     1621 ggcaccggcc cggcaaaacg tgatgtcacc ccagatgcca cccttgctgt cgcccaccga
     1681 gaaatgcccg gctttggcga acagatgcga caagtgagcc ttcacttcgt gccaaccgcc
     1741 attctctctc gccaagtggg agtaattcgc cacgacagtc tgattttaaa tctgccgggg
     1801 caaccgaaag caattaaaga aacgctggaa ggtgtgaaag atgaacaggg caaagtattg
     1861 gttaaaggta tttttagtgc cgtgccatac tgtttacaac ttttaagcga aatttatgtc
     1921 gaaacccacg cagctatttg cgaaagtttc agacccaaat cggcaagacg agaaaattaa
     1981 ggctaaaaaa tgaaaaaaat agaagcaatt attaaacctt ttaaattaga cgatgtgcgt
     2041 gaagccttaa ccgatgtggg tgtcagcgga atgagtatta ccgaaatcaa agggtttggc
     2101 agacaaaaag gacataccga gctttatcgt ggggcggaat atgcgattga ttttctaccg
     2161 aaagtgaaag tcgaaatcgt gattcccgac gagttggaag aacagtgcat tgaagcaatt
     2221 atggaaaccg cccaaaccgg caaaatcggc gatggcaaga tttttgtgta tgatgtcggg
     2281 cgggtgatcc gcattcgtac cggcgaagaa aatgaagaag cgatttagtt ttgcaaaaaa
     2341 tccggcaaaa acgaccgctt gcagggggat ttccatctac tctttttaca ttaaattttg
     2401 gatattaaat gaaaacaggc ttaaaatttc tttgggtgag tttaattgta atcatcattg
     2461 acctttggtc aaaatacatt gtagtgcaac attttgaatt tggtgaaagc attaatattt
     2521 tgccgatttt taacttcact tacgcccgaa actacggggc tgcctttagt ttccttgccg
     2581 accattccgg ctggcaaaaa tatttctttt tagggctggc ggtagtgatt tccagtgctt
     2641 tagtggtggc tctttggaag aatcaagcgg tcaaaaaatt agaaaatatt gcgtatgcct
     2701 taattattgg tggagcgatt gggaatgcca ttgaccgtgc ttacaacggc tatgtagttg
     2761 atttccttca tttttattgg gatatttatc actaccctgt gtttaatatt gccgatattg
     2821 cgatttgtgt gggtgcaggc ttactgattt tagaagcctt tataaccaaa aaagaaccga
     2881 aaaaataaga gtgattaaat gaaaatttta ttagcaaacc cacgcggttt ttgtgccggc
     2941 gtggatcgag ccatttcgat tgttgaatta gccttagaaa ttcacggtgc acctatctat
     3001 gttcgccacg aagtggtaca taacaaattt gtggtggatg gcttgaaagc caaaggggct
     3061 atttttgttg aggagctaca cgaagtgccg gacgatgcta tcgtgatctt ctcagcccac
     3121 ggggtgtcgc aagtagttcg ccaagaagcc aaaaatcgtg gcttaaaagt gtttgatgcc
     3181 acttgcccac tcgtgaccaa agtgcatatg caggttgccc gagccagtaa aaaagggaca
     3241 aaagcaattt taatcggtca cgaaggtcac cctgaagtta tcggcacaat gggacaatac
     3301 aataaccaag aaggtggcat ttatttggta gaatcggtgg aagatattgc caacttgccg
     3361 gtttccaaca acgatgaatt aacttttatg acgcaaacca cactttccat tgacgatacc
     3421 attggcgtga ttgaggcgtt aaaagagaaa tatccggcaa ttcaaggccc tcgcaaaaat
     3481 gatatttgtt atgctaccac caatcgccaa cacgcagtgc gggaactggc agaacaatca
     3541 caattagtgt tagtggtagg ttcaaaaaac tcctcgaact caaatcgttt ggcggaactc
     3601 gcctctcgaa tgggtgtgat gtcaaaactg attgatggtc cgcaagatat tgatccaact
     3661 tggttggagg gtattgaaac tatcggtatt accgccggtg cttccgctcc tgaagtgttg
     3721 gtgcaatcag taatttcgca tttaaaaacc cttggcgtaa ccgaagttga aaccttagtc
     3781 ggcaacgaag aagacgtggt gtttgaagtc ccgaaagagt tacgcatcaa agaggtaaaa
     3841 taatgacaga aatcaaccgc tttaaattag aatgggcgtg ccgacgtggt atgcgtgagt
     3901 tagacaaaat gattatgccg ttttaccaaa atcattttaa tgaactcaat gaaacccaac
     3961 agcaagcttt cgttgaaatg ctcaattaca gcgacccgga actgtttcgc tgggtaatgc
     4021 tgcaagcacc tgccccaacc gaagaaatcg ctgaattgat taggttaatg cgagataaaa
     4081 ttgagaccta gagctaatag attaacctct tctttggggt aaatatatag ctacttaccc
     4141 caaagaagac taaattcatt caacttttac aaaataaccc taaactagaa aagttaatct
     4201 tccaatttaa taatatgttg ctgataagct attaaacctt gtattacatg cactttctgc
     4261 tgataggtat tgacatagtg atcaacagcg ggttttacta ataatgacgc tgtttacctg
     4321 tctcatctgg tgaccaaagg taatcatcaa aactaataac gcctcctttt ctcactaaac
     4381 gatgtgcaag taaagcatcg aacaacacat ctggcgcttc gtgagatcca tctatgtaaa
     4441 tatagtcaaa ataatttata tatccatttg cgagaagttc aatcattttt tggtgagaat
     4501 agccacggtg cttatataac acaacatttt ggaatttctg ttgcgcaaga gtgacattat
     4561 ggataaatcg ttgttctatt tctcccatgt cccaaactcc ttgatgctct gctccccctt
     4621 cccaactatc aatacaatga atttcaactt gtgattgata tttcaatgct tcttcaatga
     4681 aaaagacaga tgatctacct tcaaatgatc caatttctaa aatcctccga ggttttacat
     4741 attcaaaaat agaagctaat gaaggaacat tatgagtaaa ccaatcagag ttaaaaatat
     4801 attggttggc tga
//
LOCUS       DANLXK010000159         4633 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.160, whole genome shotgun sequence.
ACCESSION   DANLXK010000159 DANLXK010000000
VERSION     DANLXK010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            10..327
                     /gene="trxA"
                     /locus_tag="PXD88_002392"
     CDS             10..327
                     /gene="trxA"
                     /locus_tag="PXD88_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL6281921.1"
                     /translation="MHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDDLSVD
                     AQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMAEFIK
                     QAL"
     gene            498..1721
                     /gene="hflK"
                     /locus_tag="PXD88_002393"
     CDS             498..1721
                     /gene="hflK"
                     /locus_tag="PXD88_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL6281922.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            1724..2611
                     /gene="hflC"
                     /locus_tag="PXD88_002394"
     CDS             1724..2611
                     /gene="hflC"
                     /locus_tag="PXD88_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL6281923.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            2785..4083
                     /gene="purA"
                     /locus_tag="PXD88_002395"
     CDS             2785..4083
                     /gene="purA"
                     /locus_tag="PXD88_002395"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL6281924.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(4243..4313)
                     /locus_tag="PXD88_002396"
     tRNA            complement(4243..4313)
                     /locus_tag="PXD88_002396"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4283..4285),aa:Arg,seq:tct)
BASE COUNT         1425 a          832 c         1069 g         1307 t
ORIGIN      
        1 agcaatgtca ttcatacaac agatgctaca tttgaacaag atgttttaaa atcagatgta
       61 ccggtattat tagacttctg ggcgccttgg tgtggtcctt gccgtatgat cggccccgta
      121 cttgacgatt tatctgttga tgcacaattt gatggtaaag taaaaattgt caaaatgaac
      181 gtagatgaaa atccatctgt accagcacaa tttggcgtac gcagcattcc atttttacta
      241 ttattcaaaa atggtgaagt gattgcccag caagttggtg caattccgca cgcccaaatg
      301 gctgaattta tcaaacaagc attataattt taagagcaat actagggcga atttatcgcc
      361 ctattttttt gcaaataaat agtgaaaaaa gaccgcttgt ttcagataaa cctagtcaaa
      421 agcttactaa ataggtacaa tcactaactt gcattctaag ctttaaagtg cgattcgatt
      481 ttattttgga gatatttatg tcgtggaatg aatcaggcaa tcagcaagat ccttggggta
      541 aaccggggca gaaaaaagct gagccaaagc ctgagcaaca agaacagggt tcacaacaag
      601 agccgaccaa taatcaaaga aatgaacaac agccccctga tttagaagaa gtatttagca
      661 gtttattaaa aaaaatgggg ggtggaaaag ggcctaataa tagttcaaat caacctagtg
      721 caagcttagg gaaatttcta cctgtggttt taggtcttgc agcagtagtt tgggttggct
      781 caggttttta cactgtgcaa gaggctgaac gtggtgtggt tactcgttta ggtaagctga
      841 atgatatcgt gttgccaggg ttgaattgga aaccgacttt tattgattcg gttacaagag
      901 taaacgtaga acgtgtttca gagctgaaca ccagtggctc aatgctgact caagatgaaa
      961 atatggtgca ggtagaaatg acggttcagt atcgtgtgga agacccggct aaatatctgt
     1021 ttagtgtgag caaccctgat gacagcttaa aacaagcaac agacagtgcc ttgcgttatg
     1081 tgattggtca tatgacgatg gatgaaattt taaccacagg gcgtgcaacc gtgcgtgaaa
     1141 gaacgtggtc gacattgcgt gatattatca aaacctatga tatgggttta ttggtaacag
     1201 acgtaaactt ccaatatgca cgaccgcctg aagaggtgaa agccgccttt gatgatgcaa
     1261 tcaaagcaca agaagatgag caacgcttaa ttcgtgaagc ggaagcctat gcaagaggtg
     1321 aagagccgat tgcacgtggc caggcacagc gtacgattga gcaagctcaa gcttacaaag
     1381 aagcagttgt gttaaatgcg aaaggggaag tggagcgttt gagtcaatta ttacctgaat
     1441 ataaagcctc tccagagctg actcgtgaac gtttatatat ccagacaatg gaaaaagtca
     1501 tgaaaaatac gccgaaagtg gtgatggatt caagtggtaa taatttgaat gtattgcctt
     1561 tcgataagct aatgaattct tcatcggtaa taaaagcgga gcagcctgcg gcggcacaag
     1621 tagttacacc acaagttgtt cagccgcaag tacagccaag aacacaaatt cagccgcaac
     1681 aagcagaaca acaagaacca actcgtaagg ggagatttta atcatgcgta gattattagt
     1741 acctatactt gctgtagttg cttttgttgt gctacaggca atcaccattg taaacgaggg
     1801 cgagcgtggc attatgttac gttttaacaa agttcatcgt gatagcgatc aaaaagtggt
     1861 ggtatatgaa ccggggattc actttaaagt accatttatc gatagtttaa aggtattaga
     1921 tgctcgtatt caaactctag atgggcaaga agaccgtttt gtaacagtcg agaaaaaaga
     1981 tttattagtg gactcctatg taaaatggcg aatcagtgat tttggccaat tttatacctc
     2041 tactgggggg gattaccaaa aagcggcgga tttattacgc cgtaaggtag gggatcgtct
     2101 gcgttccgag attggttctc gaaccattaa agatattgta tccggctctc gtggtgagtt
     2161 aatggcagga gcccaaaaag cgctgaatgc cggtgaagat ggagcagagc gtttaggaat
     2221 tgaagtggtt gatgtgcgag tgaagcaaat caacttacca aatgaagttt cttcttcaat
     2281 ttaccaacgt atgcgtgccg agcgtgatgc ggttgctcgt gaacaccgct cacaaggtaa
     2341 tgagaaagca gaggtaattc gtgccgaagt ggataaaaaa gtggtgctga ttttggcaaa
     2401 tgcgaacaaa actgcccaag ccttgcgagg tgaaggtgac gctcaagctg caaaactcta
     2461 ttcagagaaa tttggtaacg agccggaatt ttacagtttt attcgtagtt taaaagccta
     2521 tgaagatagc tttgccgaag gtcaaaataa tatgatgtta ttaaagccaa acagcgaatt
     2581 cttacgcttt atgcaagcac cgacaaaata attgtatcta taaaacccga tcttgtatcg
     2641 ggtttttaat tttcatccct attctgatca taacaagcgg taaattttgg ctgatttttt
     2701 gcaaaaaatt tgaaaaaatt gaccgcttgc gatatgaagt tataatgggt ttcgttattc
     2761 atcctaacta aaagaggcat ttctatgggt aaaagtgttg ctattcttgg cgctcagtgg
     2821 ggcgatgagg gaaaaggcaa aattgttgat ttattaacag atcgtgtgaa atatgtagta
     2881 cgttatcaag gtggacataa tgcagggcat accttaatca ttaatggtga aaaaaccgtt
     2941 ctgcgtttaa ttccatcggg tattttgcgt gataacgtga cttgtttaat cggtaatggt
     3001 gtagtgcttt ctccagaggc attaatgaaa gagatggggg agctagaaga acgaggcatt
     3061 aatgtgcgtg agcgtttaaa aatttctgaa gcttgcccgt taattctgcc ttatcacgtt
     3121 gcgatggatc acgctcgaga agcggcactt ggtaaaaaca aaattggtac aacaggacgt
     3181 ggtattggcc cagcttatga agataaagtc gctcgccgtg gtttacgtgt cagcgattta
     3241 ttcgacaaag aacattttgc cgcaaaatta aaagatattt tagattacta caacttccaa
     3301 ttagtcaatt attacaaagt tgaagcggta gattatcaaa aaaccttaga tgatgtgttt
     3361 gcgattgcgg atgtgattac cggaatggtt gccgatgtga caactttact tcacgaagca
     3421 cgtgaaaacg gcgacaatat tttatttgaa ggggctcaag gcacgatgtt agatatcgac
     3481 cacggtactt acccgttcgt aaccagctcg aatacgacag caggcggtgt ggcaaccgga
     3541 tcaggctacg gtcctcgtca tttagattat gtattaggga ttatcaaagc ctactgtacc
     3601 cgtgtaggta gtggaccgtt caccaccgaa ctatttgacg atgtaggtgc tgaaattgct
     3661 cgcaaaggta atgagttcgg agcggtaacc ggtcgccctc gccgttgtgg ctggtttgat
     3721 gccgtagccg ttcgccgagc agtgcaaatc aactccattt caggcttctg tatgactaaa
     3781 ctcgatgttt tagacggatt caaagagcta aaaatctgcg ttgcctacaa aatgccaaac
     3841 ggaaaaattg tcgaatatgc ccctcttgca gcaaaagact gggaaggtgt tgaaccaatt
     3901 tatgaaacaa tgccgggttg gtctgaaaat actttccgtg tgacaaaacg tgaagattta
     3961 ccacaagccg cattagatta cattaaacgt atcgaagagc tggtcggtgt gccggtagat
     4021 attctttcta caggtccgga tcgtgtcgaa acgatgattt tgcgtgatcc ttttgcagct
     4081 taataaaaga taaaataaag ccatttagtg agatagagct agatggcttt tttgtttgaa
     4141 ccagtaaact ttactttggc acaattttgt cacaatacag aaaatagttc tttagcgtga
     4201 gtttttgagg ctgtgtaagt atttgaattt aaaagaattt aatggcacgc cctaaaggat
     4261 tcgaaccttt gacccacgcc ttagaagggc gataggtatt ttataaaagg cgtttatttt
     4321 aactaataaa aacaaagact tatagagata acccctctat attacctacc attatttcac
     4381 atctttttac attaaataac accatttacg gtacatttat ggaacacgtt ggtgatgagc
     4441 tagtcttcaa aagttactaa attaaactac aatctgcccc gtctctttta agtacttata
     4501 gatacgccct aacataatct gcgttggcgt tttgccaata tcctcttttg ttagcggtgc
     4561 atcagtaatc tccttggcgg actgtgcatc aatgtatttg tactcacttg tgatgattac
     4621 aaagtttgtt act
//
LOCUS       DANLXK010000160         4565 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.161, whole genome shotgun sequence.
ACCESSION   DANLXK010000160 DANLXK010000000
VERSION     DANLXK010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4565
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            135..4031
                     /gene="purL"
                     /locus_tag="PXD88_002397"
                     /gene_synonym="purI"
     CDS             135..4031
                     /gene="purL"
                     /locus_tag="PXD88_002397"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL6281925.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            4386..4565
                     /locus_tag="PXD88_002398"
                     /pseudo
     CDS             4386..4565
                     /locus_tag="PXD88_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT         1280 a         1032 c         1123 g         1130 t
ORIGIN      
        1 ttagtattga acaaatttat ttgatactaa tgaataaatg tatctaacag caaacgtctg
       61 acaaatatag caatcgtttg cgcaatcgtt tataatcggt ttagtttttc atcttaaata
      121 ggaaaatcca aagaatgaca atccaaacct tccgtggctc gcctgcctta tctgcttttc
      181 gcattcaaca acttctgcaa aaattccaac aaaatcaatt acctgtaaaa tcagtttatg
      241 cggagttttt gcattttgtg gcattaaatc gaccgcttgt agccgatgaa gaaaacaaaa
      301 tcaaagagtt attgcactac ggtccaacgc tggaagaaga cgagccgaca gggttttgcc
      361 tgattgttac ccctcgtatc ggcacgattt cctcgtggtc gtctaaggca accgacatcg
      421 cccataactg cggtttggca gcagtagagc gaattgagcg tggcacggca tattatttag
      481 aattttctga aacgccgaac gaaagtcaac ttacgacgtt gaaaggctta ttacacgacc
      541 gtatgatgga aacggtgctg gataacgaaa gccaagccga acagcttttc gctcagcaag
      601 agccgaagcc gtttacttcg gtggatattt taggcggtgg tcgcaaggca ctggaagaag
      661 cgaatatcaa cttaggttta gcgttggcgg acgatgaaat tgattacttg gtggaaaact
      721 ttacccaact tgggcgtaac cccaatgata ttgaactcta tatgttcgcc caagccaact
      781 cggagcattg ccgccacaaa atttttaatg cggattggac gattgatggg gtaaaacagg
      841 aaaaatccct gtttaagatg attaaaaaca cctttgagaa aaccccggac tatgtgcttt
      901 ccgcctacaa agacaatgcg gcggtgatgg agggctcaac ggttgggcgt ttcttccccg
      961 accaagatgg acaatatcgc tatcatcaag aagatgctca tattttaatg aaagtagaaa
     1021 ctcacaacca cccaaccgcc atctcgccat tcccgggagc ggcgaccggt tcgggcggtg
     1081 aaattcgtga tgaaggggcg acagggcgtg gggcgaaacc gaaagcgggc ttgacgggtt
     1141 tttcggtctc taacttagtg atcccaaaat ttgaacagcc gtgggaaaac ccgctttcca
     1201 agccgaatcg cattgcctcc gcactggata ttatgattga tggcccacta ggcggagcgg
     1261 catttaacaa tgaatttggt cgtcctgcgt tattgggcta cttccgtact tacgaagaaa
     1321 aagtgaacag cttcgcaggc gaagaaattc gtggctatca caagccgatt atgttagcag
     1381 gcggtatcgg caacattcgt gccgaacacg ttcaaaaagg cgaaatcccg gtgggagcga
     1441 agttgatcgt gcttggtggc ccggcaatga acatcggctt aggcggtggg gcggcatcgt
     1501 caatggcatc ggggaaatcg aaagaagatt tggattttgc ctcggttcag cgggaaaacc
     1561 ctgaaatgga acgccgttgc caagaggtga tcgaccgttg ctggcagatg ggggcggaga
     1621 acccaatttt atttattcac gacgtggggg ctggcggttt atcaaatgcg atgcctgaat
     1681 tggttcacga cggcgaatgt ggcggtaagt ttgatttgcg taacatcttg tgcgatgaaa
     1741 aaggaatgtc gccacttgaa atttggtgta acgaatcgca agagcgttat gtgcttgccg
     1801 tttcccctga aaaactcgac attttcacag cattgtgcga aagggaaaga gccccatttg
     1861 cggtgattgg cgaggcaacg aaagagaagc atttaaccct tgctgaccct cattttgaca
     1921 ataaaccgat tgatttgccg atgaatgtgt tgctcggcaa aacgccaaaa atgcagcgag
     1981 atgttttgtc aaaaactgtg aaaaatccac cgcttgcaac cgctgacatc gacttgaaag
     2041 aggcgttcca ccgtgtgcta cgcttgcctg cggtggctga aaaaaccttc ctgattacca
     2101 tcggcgatcg ctcagtaacg ggaatggtgg cacaagatca gatggtcggc ccgtggcaaa
     2161 ttcctgtggc agattgtgcc gtaaccaccg cttcattaga cagctatcac ggtgaagcaa
     2221 tgtcaattgg cgagcgatca cctgttgctt tgcttgactt tgctgcctca gctcgcctcg
     2281 ccgtggcaga aagcatcacc aatattgccg ccactaacat tggcgacatc aaacgcatta
     2341 aactctcggc gaattggatg tcggcggcag ggcacgaggg cgaagacgca gggctttacg
     2401 aggcagtaaa agcggtgggc gaagagcttt gccctgaatt aggcataacc attccggtag
     2461 gcaaagactc aatgtcgatg aaaaccactt gggaggaaaa cggcgaacag aaatctgtta
     2521 ctgctccgct ttcgctcgtg atttccgctt tcgctcgtgt ggaagatgtg cgtaaaaccg
     2581 ttaccccaca acttcgcacc gacaaaggcg atacccgctt gttgctgatc gacctgggcg
     2641 aaggcaacaa ccgcttgggt gcaaccgcac ttgctcaagt ttacaaacaa cttggcgaca
     2701 aacctgccga tgtggtgaat gtggctcgct taaaaggctt cttcaacgca atgcaaaccc
     2761 ttgtcgcaca aggaaaattg cttgcctacc acgaccgctc ggacggtggt ttaatcacca
     2821 cactggcgga aatggcgttt gcagggaatt gcggaatttc ggtggaaatc gaccgcttgg
     2881 tggacgattt agccgtgtta ttcaacgaag aactgggggc agtaatccaa gttcgcaccg
     2941 aagaattgag cgaggtgcaa gcggtgttaa atgccgaaaa tcttgcaaat ctcacctttg
     3001 atattggtac agcggttgaa agcgacagct ttgaaattac ccgcaacggc acaacagtat
     3061 ttagccaaaa acgttccgaa ctgcgtggca tttgggcgga actcactcat caaatgcagc
     3121 gtttgcgaga caaccctgaa tgtgcagacc aagaatttgc agcgaaaaaa gacccgaata
     3181 acaaaggctt atccgcattt ttaacttacg atgtgaacga agacatcgcc gccccataca
     3241 tcaacaaagg cgtaaaaccg agtgtggcga ttttgcgtga gcaaggtgta aacagccact
     3301 acgaaatggc agccgtcttt gaccgtgccg gtttcaacgc cattgacgtg catatgtcag
     3361 acttgatttc aggcagacgc aacctcaacg acttcaacgc aatggtggcg tgcggaggct
     3421 tctcttacgg cgatgtctta ggtgcaggcg gcggctgggc gaaatcgatt ctgttcaacc
     3481 caatgctgcg tgaccaattc agcaaattct tcgccaaccc gaacacgctg gcattagggg
     3541 tatgtaatgg ttgccaaatg gtctccaatc tagcggaaat tattccaggc acagaaaact
     3601 ggccacgctt cgtgcgtaat aaatccgaac gttttgaagc ccgtgctgca atggtgaaaa
     3661 tcaacgacac caactcactt tggttcaacg gaatggcagg cagccatatg ccgattgcgg
     3721 tttcacacgg tgaaggacaa gttgagttca aaaatccaca gcaattagcg aacttgcaac
     3781 agcaaaatct cgtgatcgca caatatgtgg atagccacct caacccaacc gaacaatacc
     3841 cagccaaccc gaacggatcg gcgttgggta tcaccgctat cggtaataca gacggacgag
     3901 tcgctattat gatgccacac cctgaacgtg tgttccgtgc ggtcagtaac tcttggtgcc
     3961 cagaagattg gacggaaggt ggagcgtgga tgcggttgtt tagaaatgcg agagtggcgt
     4021 tgaagtatta aaaatctacc ttcgtagtga tctgccccca tagggggcga ttaaaattcg
     4081 aattcataga acccgaattt ttatatatct gataaacgaa gttgtttatc cttcgtgctt
     4141 ttcctgatat ttcaagtact ttcttatcat ttctgcattg acatctacgg tgtctacgca
     4201 gtagcctctt gccacaaaag tgggttgccc cacaatttat gcttacgtaa atagggaaac
     4261 ttattgaaaa atcttattgg accctgttca cccttttaaa tgccccatta cgtcttatac
     4321 agaaaatgaa cgtgatttat ttgaacggtc aattctacct taatagaaag tggtttttag
     4381 ttagcaatca aaatcacatt aacggaattg agaatttgga gagtcaggca aaatgctatt
     4441 tgcgtaaatt taacggcgtt cctaaagtac atgaattcta tttgaaagaa tgcagatggc
     4501 gttttaatca cagtaactta aaatatcaag ttttcttttt aaaacaattg gttaaattga
     4561 gtttc
//
LOCUS       DANLXK010000161         4499 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.162, whole genome shotgun sequence.
ACCESSION   DANLXK010000161 DANLXK010000000
VERSION     DANLXK010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            30..2120
                     /locus_tag="PXD88_002399"
     CDS             30..2120
                     /locus_tag="PXD88_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL6281926.1"
                     /translation="MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQ
                     IIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDT
                     TCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV
                     IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQ
                     YTDRVRIITEDVNPASLIKLCEKVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDD
                     RNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIDYLYKAKRLN
                     QRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGK
                     ADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQIL
                     LSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDVKFNAQGKKIILVPGQVEDDASI
                     KSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDN
                     ANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSL
                     TLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKL
                     QHLYRAFKYASHTK"
     gene            2143..3375
                     /locus_tag="PXD88_002400"
     CDS             2143..3375
                     /locus_tag="PXD88_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6281927.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            3456..>4499
                     /locus_tag="PXD88_002401"
     CDS             3456..>4499
                     /locus_tag="PXD88_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6281928.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHPAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQNL"
BASE COUNT         1451 a          707 c          908 g         1433 t
ORIGIN      
        1 cataaatacg aatatgagat taatttttta tgcttagcta tttagtgttt tttagtaaaa
       61 ttataaaaat ccctaattta aaaggttttt tacctcattg tgaaattagg cgaagacctc
      121 ttgtgggaaa aacctttatt gctcaaaaaa gaccgaacca aatcatcggc tgggggcttc
      181 gtccttcagc ggtgggatca agagcttatg cacaaaaaca tcaacttccc tatattgcat
      241 tagaagacgg ctttttacgc tcactagggc tgggtgtaaa aggctatccg ccattttctt
      301 tagtttatga tgatataggt atttattacg ataccacctg tccttctcgt ttagaaaagt
      361 tattgcttga aaaaccttta caggatcaag agcaaatcaa gcttgcagag agagcattat
      421 ctcaaatctt aacttacgga ctttctaaat ataatcacgc actagatttt agtgaaatcc
      481 cctctgccaa agaaaaaatc gtgttagtta ttgaccaaac ctttggtgat atggcggtga
      541 aatatggtca agcgagtgaa gtggatttca ataaaatgtt ggaaacggca atcagtgaga
      601 atccagaggc tcaaatttgg gtaaaaactc accccgatgt attaagtggc aagaagaaag
      661 gctatttgac cgatttacct caatatactg atagggtcag aattattact gaagatgtga
      721 atccggcaag tttgattaaa ttgtgtgaga aagtctattg cgtaacttcg caaatggggt
      781 ttgaggcatt attattaggt aaaaaagtgg ttacctttgg tgtaccgtgg tttgccggtt
      841 ggggggtaac agatgatcgt aacgaagcgg ttcaactatt agttcaacaa aatagacgga
      901 aagatcgttc attactgcaa cttttttatg ctgcgtattt tgattacagc cgttatatta
      961 atccgaatac cggtgagaaa ggctctattt ttgatgtcat cgattatcta tataaagcca
     1021 aaagattaaa tcagcgctta agtgggaatc tatactgtat tggtatgtcg ctatggaaac
     1081 aggcggtaat taagccgttt tttaatttgc cacaatgtcg attacatttt gttcgttcgc
     1141 taaattcttt aaaaaaacga ccgcttgcag ataatgcaaa aattttagtt tggagcaatg
     1201 gcaaagcgga tgtcttgcaa tttgcacagc agaataatat tccattgtta agaatggaag
     1261 atggattcat tcgctctgtc ggactaggcg ctaatttagt tgcaccgctt tctttagtag
     1321 tcgatgattt aggcatttat tttaatgcag agaacacttc acgattagaa caaattttat
     1381 tgagtgcaga gcatttttct gaaactgatt tgtcttatgc tgaaacatta aggcagaaat
     1441 tggtggctag ccatattgga aaatataatg tgggcggtgg cgatgtaaaa tttaatgctc
     1501 aaggtaaaaa aataattctt gtaccggggc aggtagaaga tgacgcttcg atcaaatcag
     1561 gttctccaca aattaaaaga aatctggatt tactgaaaaa agtgagggaa ttaaacccta
     1621 gtgcctatat tatttataag cctcaccctg atgtggtaag tggtaatcga gtcggtcaga
     1681 ttcctacggc agaaacacgc aggtttgcgg atcagatggt ggataatgcc aatattttag
     1741 attgtatttt aattgcagat gaagtgcata caatgacatc tttagccggt ttcgaagcat
     1801 tattaagagg taaaaaagtg cattgctacg gattaccttt ttatgctggt tggggattga
     1861 cggaagatag attgaagtcg gcacgcagag gtaaatcttt gacattatct cagttaattg
     1921 ccgcaacatt gatatattac cctctgtatg ttgatcctat aagcaggcag tttattgatg
     1981 ccaatcaagc gattcatata ttgtcacaac agaaacgaaa cctaaccaat caaaggatta
     2041 aacgttcttg ggtgagtaaa caatatggaa aattacagca tctttatcgt gcgtttaaat
     2101 atgcttccca cactaaataa gcgtagaggg taggaaatta agatggaaca ttatttagat
     2161 gagctaatca tcaatagcca gagaatttta ttgttacaag gcccgatagg ctcttttttc
     2221 actgagtttg cccgttggtt agaaagtgag caaaaagagg tcttcaagtt aaattttaat
     2281 ggcggagatg aatatttcta tccaaataat agcccgaata cttttcctta ctatgatagc
     2341 ttagataatt ttgaagccta tttaattcag ttttgccaaa ctcatcaaat agataatatc
     2401 ttatgttttg gcgataatcg ttattatcat aaagtggcta aaaacgtttg cttgaagtta
     2461 aagttggtct tttgggcgtt tgaagaaggg tactttaggc cagaatatat tacgttggaa
     2521 aaatggggtg taaatgcttt ttctccaatc cctaaaaatc acactttctt tttgccttat
     2581 gccgagttac cagtagtcag tgaaccagaa aaagtatcta aaggctttag atgtatggcg
     2641 ggaaaagcaa tcccgtacta ttggaatgcc tataaaaaac gtaaagcata cgcaaaatat
     2701 cagcatcatc gttttctgaa tctcaaatac taccttaatt tatggacaag gtcgggaatt
     2761 aagcgaatat gttattggtt acatgataaa ggctttgcca agcgggtaga aaaaggagag
     2821 tttggtgaat ttttcattgt gcctctacaa gtttatgatg acactcaagt gaggattcat
     2881 agtgaacaaa aaagtgtaga gcgtttttta agggaagttc tgaattcctt tgccaaattt
     2941 gcaccggcac atctcaattt aattattaag catcacccga tggatagagg atttatagat
     3001 tataaaatgg tgatttatga attcttagag caatatcccc aattaaacgg tagagttttt
     3061 tatattcacg atgtgccgtt acctgtcttt ttacgttatg ggaaaggaat ggtgacttta
     3121 aattcaacca gtgggctttc tgcattgctc cataatatgc cggtcaaaac cttaggtaga
     3181 gccaattatg attttgaggg attaaccgat aaacagccat tagatacttt ttgggctaat
     3241 cctcagccac ctaattcgga agtatttaaa ggctacagac aatttcattt acataaaacg
     3301 catattaacg gtaattttta ccataaatcg attttgcgtt atccttataa ttgggaaaat
     3361 gaagcacaca ggtgatggaa aatattaaaa taagtaatat cttatagcta aattattgtg
     3421 ttattattac acctattgtt aaaagagggg gcattatggc tatttatgca atatggaata
     3481 ataaaggtgg ggttggtaaa agttatttaa cttttcaaat cgcttgtgag tatgcaaaac
     3541 aatacccagc aaaaaaagtt ctcgttgttg atttatgtcc tcaagcaaat tcatcatcta
     3601 tgctattagg cggcattgaa aaaggtgagc aagagttagc aaaaattcat tctcaagtaa
     3661 acaagaatac tatttcagga tatatttcag aaagattagt aagtccttac cgttctatta
     3721 atagtgcaac gaaatatgta actcaagtta gcactataaa tgaatatgta ccaaaaaatg
     3781 tttatcttgt tgttggtgat gaggaattag aaatccaatc atctggtatt ttacatgctt
     3841 cccaagctgt tcatgttcct gattcttggc ggctagtgca tctttgggtg cgtgatttag
     3901 tttctgatat acagaacgct tgggataatg atgataacgt tgtatttatt gattgcaatc
     3961 caagtttcac tatttatact gaattagcgt tggctgcttc agatagattg atcatccctt
     4021 tttccgctga tggttcatca aaacgagctg ttaagtctgt attatctcta gtatatgggg
     4081 ttaaaaggca ctctggggat gtcagctctc atttttatac agaatctcaa aagagtaagt
     4141 tagcattacc tcaaatttat atgtatgtag gtaatagatt aacgataaat gccaaagcat
     4201 cagcaaccgc atttaaaaca gttgtagagg aaataggtga tgaaatctat aatatatgga
     4261 aaactaatgc taatttgttc tgtattcacc cagcaggtgt tggtactcct acaaataaat
     4321 caagcttcag aaaaatgttt cagtatgagg tgagagatgc aaatacagca tctgttgttt
     4381 caggtgcttt aggtattcca attagtcgct tatcatcagg aaaaagagat gttttaggta
     4441 aaaatgtaat ggtgaatcag tcacaattag atgctcaagt tcctaacatt caaaatctt
//
LOCUS       DANLXK010000162         4498 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.163, whole genome shotgun sequence.
ACCESSION   DANLXK010000162 DANLXK010000000
VERSION     DANLXK010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4498
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            217..1536
                     /locus_tag="PXD88_002402"
     CDS             217..1536
                     /locus_tag="PXD88_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL6281929.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(1706..3649)
                     /gene="ftsH"
                     /locus_tag="PXD88_002403"
     CDS             complement(1706..3649)
                     /gene="ftsH"
                     /locus_tag="PXD88_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL6281930.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(3770..4396)
                     /gene="rlmE"
                     /locus_tag="PXD88_002404"
     CDS             complement(3770..4396)
                     /gene="rlmE"
                     /locus_tag="PXD88_002404"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL6281931.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         1228 a         1022 c          831 g         1417 t
ORIGIN      
        1 tgcctttacc agtaaatttt ttgttacaac tggaaagaaa ttggtacaaa cattcggatt
       61 agctttgcaa aaagcgtaaa aaatcttacc gcttgtcatt tatcagttag ggaaaataaa
      121 aaatcactct cttatataaa aacaattacg caaacgattg cttattaaaa aaacttcagt
      181 ataatgccga cattttttaa ctctcgagga atcactatga accatttact ttattctgtc
      241 gaagacaaac cgcctttcgg gctgagctta ttgcttgcct cacaacattt attagccgct
      301 ttaggtggca ttatcgctgt acctttagtg ctagggaatg tactcaaact ctctactgcg
      361 gatactataa tcttagttaa tgctgcactt ttaatttcag gcatcgtcac tattattcaa
      421 tgtcgaggta ttggcccaat cgggattaga ctaccgagtg taatgggaac tagctttacg
      481 tttgttgcag cagcattagc gattggtttc agtgaaagtg gcattgccgg cattatggga
      541 gcctctttag ttggctctct agtgatgatt atcggcagtt tttttatgcc ttatatccgt
      601 aagctttttc cacccgtggt aacaggtact gtcataatga tgattggcct aagtttaatt
      661 cctgttgcag tagactggtt tgctggtggt cagcgtactg atccacacta tgcaacccca
      721 gaaaatctta taatggctag ttttgtatta attattgtcg ttgctttagt acaatggggg
      781 aaaggtattt tttcagctgc tgctattgtg attggtatga tgataggtta tatcgtttcg
      841 ctagctctgg gttgggtaag ttttaatggc gtgaaagaag cacaactttt tgcgttacca
      901 caacctctac attttggctt agaatttcca atctccggta tcatcggaat gtcaattgct
      961 tatttagtta ccattgtaga atctagcgga aatttcttag cactaggcaa tgcaactaaa
     1021 actgaaatta ccggaaaaca cttacgtgga ggtgtattat gtgatggttt aggctcagca
     1081 tttgcggcaa ttatgtccac aactcccttt tcttctttct cacaaaatat tggggtcatt
     1141 tcattaaccg gtgtagccag tcgctatgtt gtagcattta caggcgcatt acttgtacta
     1201 gccggtttat ttcctgtatt tggagcatta atcgtgtcta tcccgttacc tgtgcttggc
     1261 ggtgcaggct taatgatgtt tgccatgatt atcgcagccg gtatccaaat gttagataat
     1321 attcaacgta gcaaacgaaa cggtttaatt attgctatct ctatcggttg tgggctggcc
     1381 gtaacaactc gacctgagct attggataag cttccacact tctttaaaga agtttttggc
     1441 tcaggtatta cggtcggctc cttattagca cttattttga atttagtttt acctgaagat
     1501 aaaataacca agaaagaaaa taagagtgat gaataaatca ccctaaaaaa acaaggacag
     1561 ctcacaatac aactttgatg ctgtccttta ttcccataga gagcatattt aaatttaggt
     1621 taataaaaaa atctgcactc tatattggtg tttaccttta gagtacagat ttcttcttat
     1681 tctaactttc tagcaaacaa ttagattaat gttccgcttt ggtatcggct aacgaatccc
     1741 caatgttatt atctttattt ggattatcct ctaaagttga acttacatcc gctgcctgtt
     1801 caccacttgg tggagtggcg ttatcgtctt tagttggggt atctgtccaa cctgatggtt
     1861 cacccaccgg acggcgtgcc attaaatcat caatttgctt gctgtctaag gtttcgtatt
     1921 tcaataaggc atctttcatt gcgtgtaaga tgtccatatt ttcttccaaa gtttgcttcg
     1981 ctcgttgata gttgcggtca atgatcttac gcatttccac atcaatcaat ttttgcgact
     2041 cttccgatac gcccttaatt gcacccattc catcttcatt ttgatagaaa atcgggccta
     2101 attcttttga gaagccccat tgagtaacca ttgctcgtgc aatttgggtt gctcgatgaa
     2161 tatcagagga agcccctgtg gtaattttat cttcaccaaa aatcaagccc tcagcaattc
     2221 gccctgcaaa tagggtggaa agttggcttt ccaatttggt aaatgtttcg cttacacggt
     2281 caccttccgg taagaattga gcaaaaccta acgcctgacc acgaggcaca attgtcactt
     2341 tattcagcgg atcgtgttcc ggcattaaat agccaacaat aacgtgtcca gcttcgtggt
     2401 aagcagtatt gatgatctct ttttccgtca ttgtatttga acggcgttcc ggccccatat
     2461 tgattttgtc acgggcttct tcgaaatctt ccatcattac cacacgttta ttcttacggg
     2521 cagcaaataa ggcagcttcg ttcaccaagt ttgctaattg agcaccagag taacccggcg
     2581 taccacgagc aatttgcatc gggtcaactc cctctgcaag cggtactttt ttcaagtgaa
     2641 ctttcaaaat ttgctcacgc cctttcacgt tcggcaaatc gaccgtgact tggcggtcga
     2701 aacgccccgg acgagttaag gcatcatcta acacatcggc acggttggtt gcagcgatga
     2761 taatcacacc ttcagagcct tcaaagccgt ccatctcaac taacatttgg ttgagggttt
     2821 gttcacgctc atcgtgtcca ccgctgaaac ctgcaccacc acgtttacgc cctaccgcat
     2881 caatttcatc aataaaaata atacaagggg catttttctt ggcttggtcg aataaatcac
     2941 gcacccgtga agcacccaca cctacaaaca tttccacgaa gtcggaacct gccattgtaa
     3001 agaatggcac tcgtgcttca cctgcaatcg ctttcgccaa taaggtttta cccgtacccg
     3061 gagggcctac catcaagatc ccttttggaa tgcgcccacc taatttttga aatttagttg
     3121 ggtcacgcaa aaactcaaca acttcgccta cttcttcttt ggcttcatca cagccggcta
     3181 catcagaaaa tctggtctta acttcgtctg cggtcaacat tttggcttta tttttcccaa
     3241 agcccattgc accacgtcct ccgccacctt gcatttgtcg catataaaac acatagaaac
     3301 cgattaacag caacattggg aaccaagaaa tcaaaatttg cgagagcaag ccacgacgct
     3361 cagcaggctg accggtaatc actgcattgg tttttgctaa atctgccatt aagtactcat
     3421 catacatcgg cattacggtt tggtaggttg caccatcatt tttcgtcacc aaaatggtgt
     3481 catcattctg tttgaaatcg acccctttta aacgattttc tttaatatcg cttaaaaaag
     3541 tcgaatatgg cactgtattt gagctaccac tgaaattaga attaaaacct tcataggctg
     3601 tcatcatcac aatggcaatc accacccaaa gtaaaatatt tttaaccata tcgttcaagg
     3661 ttaatcccct atctgctgaa taaaaaactg ttcaagatta ctataaaagc ggtcgaattt
     3721 tccaattttt ttgcaaaatg ttaataaaaa atgaccgctt gcttgttttc tagcctttat
     3781 aacctgtcgc tacaatataa acttctcgag accgatctcg agacgcctcc ggttttctga
     3841 cttttaccac actaaagagc gagcggattt ctcgaaggta ttcatcaaat ccttcgcctt
     3901 ggaatacctt aaccacaaaa ctgcctttgg ttgctaatac ttggcgacac atatccaatg
     3961 ccaattccac taaatacatt gcacgaggaa tatcaaccga cggcataccg ctgaaattgg
     4021 gagccatatc cgacatcacc acattcactt tgtcttcgcc tactcgctca agtaacgcat
     4081 tcagcaccga ttcttcacgg aagtcgcctt gtaagaaatc cacgcctaca atcgggttca
     4141 tatctaaaat atcacaagcg attactctgc ccttactgcc gatttgcgtc accacatatt
     4201 gcgaccaacc gcccggtgcg gcaccgagat ccaccaccgt cattcccggt ttgaataaac
     4261 ggtcggtttg ttgaatttca tctaacttaa aatacgcccg tgaacgcaat ttttgtttat
     4321 gtgctttttg cacaaattga tctttaaaat gttctgcaag ccaacgtgat gaactcgcac
     4381 ttcgttttct acccatttgt tcttctatct taattaattc aacgatttat aataagggtt
     4441 aaattagcaa attcaagaga tgttctaaaa tttagctcgg cttattatgc ttaattaa
//
LOCUS       DANLXK010000163         4445 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.164, whole genome shotgun sequence.
ACCESSION   DANLXK010000163 DANLXK010000000
VERSION     DANLXK010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4445
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(256..1023)
                     /locus_tag="PXD88_002405"
     CDS             complement(256..1023)
                     /locus_tag="PXD88_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL6281932.1"
                     /translation="MSKIIKIGKVANNSDAIDAISTQPRHSVIVGTIKRLQTDRIDLL
                     YQHRVDPNVPIEEVAGAIKDLMKQGKVLNWGLSEAGEKTIRKAHAIQPLTAVQSEYSL
                     FFRGREKDVILVCEELGIGFVPWSPLAMGALAGYVDENSRFEADPSKDLRGIIPRFTP
                     EAMQQNVKLIQLVQKWAKRKLCTPAQLSLAWLMAQKAFIAPIPGTSKARHLLDNLGAD
                     DVKFTEEELAQFRQELEAIEIVGLRLPEAILNFSEAK"
     gene            1022..1342
                     /locus_tag="PXD88_002406"
     CDS             1022..1342
                     /locus_tag="PXD88_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281933.1"
                     /translation="MELKVIHKNLVDSAKIKLHAVYLVIFLFVSHFAMIFGMADPISA
                     GYQPTTPAMTHSMQMDAKQITEMHNQMMTGEITPEEMMKMHQEMNPNMNMPNTQGGHS
                     EHHK"
     gene            1524..1979
                     /locus_tag="PXD88_002407"
     CDS             1524..1979
                     /locus_tag="PXD88_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDL6281934.1"
                     /translation="MKLHKFTRSLLLLSLGITAFAQAQTLSMEVWKSPTCGCCNEWIS
                     YMQKNGFEVKVNETGNYDAHKRFNIKYEHASCHTAVIDGYVIEGHVPAEDIKRLLAEK
                     PDAIGLSAPGMPIGSPGMDGEAYGGRKDPYDVVLIKKNGESEVFKSYNQ"
     gene            1993..3540
                     /locus_tag="PXD88_002408"
     CDS             1993..3540
                     /locus_tag="PXD88_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HDL6281935.1"
                     /translation="MKRRDFLRYGIGISLASSSLYSLANMMNHAQHGNMAMMHSVPTG
                     LMPTEAMPSGLSLNGILPKLANQSTQAGLFKATLKAEPIKIRLADNKETEFWAYNGQL
                     PGPQIEVFEGDTVEIEFINHLPQPSTVHWHGLDVPNEADGNPMDMVEPQGKKVYRFTL
                     PQGSAGTYWYHPHPHDHVSEQVYKGLAGTFVVKAKNDPLAHLPEQHWVISDLRLNADG
                     TIPANTMLDWINGREGEFVLINGQYQPQIQVKTNERIRLWNATSARYFRLNIPGVKWI
                     VVGTEGGLLEKPRSPVDELLLTPAERVEVIMVGETQGTVNLQSGYYDRRKMMVQEQPK
                     DLTLATIQVKSEPVQLPESLRSLPNWDEPKQVRQIRFSEKMMNHTNMPMMNHGTHHAT
                     TTLTDNPIPPMMNGMFLINGQTFDMNRIDFVTKLNEVEQWEIFNESHMDHPFHLHGTQ
                     FEVIQHTLNGKTFKPEGRALKDVVNLRPYEKVIIRFKQGHTGLKMYHCHILEHENLGM
                     MGMFKVE"
     gene            complement(3630..3785)
                     /locus_tag="PXD88_002409"
     CDS             complement(3630..3785)
                     /locus_tag="PXD88_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL6281936.1"
                     /translation="MGLNRAEMMYREGAYVIDPVFPATLGYAGAGVVVAVGDDAGEFQ
                     IGDKVSV"
     gene            3874..4053
                     /locus_tag="PXD88_002410"
     CDS             3874..4053
                     /locus_tag="PXD88_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281937.1"
                     /translation="MFLVNQLLAITIATSAVLTNAQLAILAVAFWIAILPCARLATAV
                     GVWVFDDVVHNNSPN"
     gene            4102..>4445
                     /locus_tag="PXD88_002411"
     CDS             4102..>4445
                     /locus_tag="PXD88_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281938.1"
                     /translation="MPFKTVTFAQATTNDGQSLLAVNDLFIGPKSHTSAQYILQWNGA
                     EEVQSSSGIIVSTGLGSTGWFQSILAGAMAITGEASHPLLQGFSWSDRKLQFSVREPF
                     PSRTTGVALTFGT"
BASE COUNT         1368 a          920 c          892 g         1265 t
ORIGIN      
        1 accaaacaga taatatttgt ccataaattc attgagttga ttatgccatt tttacactta
       61 ttgactatag cgttttgcct aatcatctgt ctgattccag ttttaccctt ttcccaatat
      121 ctttcaattt cgataaatct tccactaatc ttgctacata ttcaagaaaa agtgcgatcg
      181 tttttcaaag gattttatga aaacgaccgc tgtaagaaag aatttttatt tacgactttt
      241 tcaggtatct gaaaactatt tcgcttctga aaaattcaaa attgcttcag gcaaacgcaa
      301 gccgacaatt tcaatggctt ctaattcttg gcggaattgc gccaattctt cttcggtaaa
      361 tttcacatcg tctgcgccta aattatccaa caaatgacgg gctttgctcg tcccaggaat
      421 tggcgcgata aacgctttct gtgccattag ccaggccaaa gaaagctgtg caggcgtaca
      481 aagtttgcgt tttgcccatt tttgcacaag ctggattaac ttcacatttt gttgcatcgc
      541 ttcgggtgta aagcgtggga taataccacg caaatctttg cttggatcag cctcaaaacg
      601 gctgttctcg tccacataac cagccaatgc tcccattgcc agcggcgacc aaggcacaaa
      661 cccaatccct aattcttcac aaacgagaat gacatctttt tcacgaccac ggaaaaacaa
      721 cgagtattcg ctttgtacgg cggttaaagg ctgaatagcg tgtgccttgc gaatggtttt
      781 ctcgcctgct tccgacaagc cccaattcaa aactttgcct tgtttcatta aatctttaat
      841 agcgccagcc acctcttcaa tcggcacatt gggatcaaca cggtgttgat agagtaagtc
      901 aatacggtcg gtttgtaagc gttttatcgt accgactatt actgaatggc gtggttgggt
      961 agatatcgca tcaattgcat cactattatt agctaccttt cctattttta ttattttact
     1021 catggaatta aaagttattc ataaaaatct cgtggatagt gcaaaaatta aattacatgc
     1081 ggtttatctt gtgattttct tatttgtgag tcactttgct atgatctttg gcatggcaga
     1141 tcctatttca gcaggctatc aacccactac accagcaatg actcattcaa tgcaaatgga
     1201 tgctaaacaa ataacagaaa tgcacaacca aatgatgacg ggcgaaataa cgcctgaaga
     1261 aatgatgaag atgcatcaag aaatgaaccc taatatgaat atgccgaata ctcaaggtgg
     1321 tcattcagaa catcataaat aataattctg atcacatttt aaaaaataat agtggatggt
     1381 acgttggcat atctctacta caagcagtag gattttgaga aaaattttca aatgatagaa
     1441 ttttttcaga ttacttgacc ttaaccctag gttaagcttt aaaatgatgt ccattcaatc
     1501 tcaataaaaa ataaggacat cttatgaaat tacataaatt cacccgctca ttgttgcttt
     1561 taagtttagg cataaccgct tttgctcaag cacaaacact ttctatggaa gtgtggaaaa
     1621 gcccgacttg tggctgttgt aatgaatgga tcagctatat gcagaaaaac ggttttgagg
     1681 ttaaagtcaa cgaaacaggc aattatgatg ctcataagcg ctttaacatt aaatatgaac
     1741 atgcttcttg ccacacagcc gtgattgatg gctatgtgat tgaaggacat gtacctgctg
     1801 aggatatcaa acgtttactc gcagaaaaac ccgatgcaat aggcttgtct gcaccgggaa
     1861 tgccaattgg ttcaccaggt atggacggtg aagcatacgg cggacgcaaa gatccttatg
     1921 atgttgtttt gattaagaaa aacggtgaaa gtgaagtgtt taaatcctat aaccaatagg
     1981 gggggggaaa gaatgaaacg tcgagatttt ttacgttatg gaattggaat tagcttagcc
     2041 agtagctcgc tttatagcct cgcgaatatg atgaaccacg cacaacatgg caatatggcg
     2101 atgatgcatt cagtacctac tggcctaatg ccaactgagg caatgccttc aggtttatcg
     2161 cttaatggga tattaccaaa acttgctaat caatcgactc aagctggact gttcaaagcc
     2221 actttaaaag cagagccaat taaaattcgc ctcgcagaca ataaagaaac ggaattttgg
     2281 gcttataacg gacaactacc agggccacaa attgaagtat ttgaaggaga taccgtagaa
     2341 attgaattta tcaatcacct accacaaccc tcaacagtac attggcacgg cttagatgta
     2401 ccaaatgagg cggatggtaa cccgatggat atggttgaac cgcaagggaa aaaagtctat
     2461 cgctttacgc tacctcaagg cagtgctggg acatattggt accaccctca tccacatgac
     2521 catgtttccg aacaagtcta taaaggctta gcaggcactt tcgttgttaa agcgaaaaat
     2581 gatccgcttg cacaccttcc tgaacaacat tgggtgattt ccgatctgcg tttaaatgcc
     2641 gatggcacca ttccagcaaa cacgatgtta gattggataa acggtcgtga gggtgaattt
     2701 gtgttaatca acggtcaata tcagccccag attcaagtga aaacgaatga acgaatccgt
     2761 ctttggaatg ccactagcgc tcgttatttt cgtttaaaca ttccaggggt gaaatggatt
     2821 gtggtgggta ccgaaggtgg tttacttgaa aaacctcgct cgcctgttga tgaactgcta
     2881 cttacaccag ccgaacgcgt tgaagtgatt atggtgggtg aaacgcaagg aacagtcaat
     2941 ttacaaagcg gttattatga tcgccgtaag atgatggttc aagaacagcc taaagatctc
     3001 actttagcca caattcaggt gaaatcagaa cctgttcagt tacctgaaag cttaaggtcc
     3061 ttgcctaact gggatgagcc aaagcaggtt cgccaaattc gctttagtga aaaaatgatg
     3121 aaccatacga atatgccaat gatgaatcac ggtacacatc acgctactac aacactaacg
     3181 gacaacccta ttccaccaat gatgaatggt atgttcttaa tcaacggtca aacctttgat
     3241 atgaaccgta ttgattttgt taccaaattg aatgaagtgg aacagtggga aatcttcaat
     3301 gaaagccata tggatcatcc attccattta cacggcactc aatttgaagt aattcaacat
     3361 acgttaaacg gtaaaacctt taagccagaa ggcagagcgt taaaagatgt ggttaattta
     3421 cgcccttatg aaaaagtgat tattcgcttt aagcaaggac atactgggtt gaaaatgtac
     3481 cattgccata ttttagaaca tgaaaatctc ggtatgatgg ggatgtttaa agtggaatag
     3541 tggtatctaa ctataaaaat agagggattt cgtcataaaa aatctgcacc ttaatcagtt
     3601 ggtttttagt ccaacttttg gggtgcagat cagacgctca ctttgtcgcc gatttgaaat
     3661 tcgccagcgt catcgcccac tgccacgacc acgcctgccc ctgcataacc caaagtcgca
     3721 gggaacacag ggtcaatcac atacgcccct tcccgataca tcatctcggc acggtttagt
     3781 cccaatgcac ggcacggttt ttaaacattt tcattatagt tttccttatc aaaatgggat
     3841 ttggcaaaca ttgggcaaac ctaagcccgc ccaatgtttt tagttaatca attacttgca
     3901 atcacaatcg ccacaagtgc agttttgaca aatgcacagc tcgccatttt ggcagttgca
     3961 ttttggattg caattttgcc ctgtgcaaga ttggcaaccg cagtgggcgt ttgggttttt
     4021 gatgatgtcg ttcataacaa ttctccaaat taaaggttga ttatcaaaac aaaaaccgtt
     4081 tttaaaccca ttaataaaaa aatgccattt aaaacggtca cttttgcaca agcaacaacc
     4141 aatgatggtc aatccttatt agcggttaat gacttattta ttggccctaa aagccacact
     4201 tccgcacagt atattttgca atggaatggc gctgaagaag tgcaatcttc atcaggcatt
     4261 attgtatcaa caggattggg atcaacgggg tggtttcaat ctattcttgc tggtgcgatg
     4321 gcaattacag gagaagcttc gcaccctcta ttacaaggct ttagctggag tgatcgaaag
     4381 ctacaattta gtgtaagaga gccatttcca agtagaacaa caggtgttgc actgactttt
     4441 ggcac
//
LOCUS       DANLXK010000164         4376 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.165, whole genome shotgun sequence.
ACCESSION   DANLXK010000164 DANLXK010000000
VERSION     DANLXK010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            46..1254
                     /locus_tag="PXD88_002412"
     CDS             46..1254
                     /locus_tag="PXD88_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL6281939.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1307..3442
                     /gene="pta"
                     /locus_tag="PXD88_002413"
     CDS             1307..3442
                     /gene="pta"
                     /locus_tag="PXD88_002413"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL6281940.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3556..4236
                     /gene="can"
                     /locus_tag="PXD88_002414"
     CDS             3556..4236
                     /gene="can"
                     /locus_tag="PXD88_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL6281941.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLNDEN"
BASE COUNT         1369 a          803 c          883 g         1321 t
ORIGIN      
        1 tagtattttc ttcaaactca tttcataaaa taaggtaatt tgaccatgtc taaaaactta
       61 atcttaatcc ttaactgcgg tagttcatct cttaaatttg ctattttaga tcctaaaaca
      121 ggtgatgaaa aattatctgg acttgctgaa gcttttcatt tagaagatgc acgtatcaag
      181 tggaagttaa acggggagaa aggtaatgct gatttaggtg caggtgccgc acatagtgaa
      241 gcacttacct ttattgctga aaaattgtta tctgacgaat taaaagcagg tatcggcgcg
      301 attggtcatc gtattgttca tggcggtgaa aaattcacct catcagttgt aattaccgat
      361 gaagtgatta aaggtattga agatgcaacg caatttgcac cattacacaa ccctgcgcat
      421 ttaattggta ttaaagaagc attccgcatt ttccctgaat taaaagacaa aaacgtagct
      481 gtatttgaca ctgcattcca tcagacaatg ccggaacacg cattcttata tgcacttcca
      541 tatacattct ataaagaaaa tggtattcgt cgctacggtt tccatggcac aagccacttc
      601 tatatcacct cacaagttgc agaattagca ggtaagtctg ttgagcaaac caatgccatt
      661 atttgccact taggtaacgg tggttctgtt tctgttgtac gcaatggtaa atgtattgat
      721 acctcaatgg gtttaactcc attagaaggt ttagtaatgg gtactcgctc tggtgactta
      781 gaccctgcga ttatctcttt cttatacaat aacttaggta tgtcaatgga cgaaattgat
      841 actactctag taaaaaaatc tggtctttta ggtttaactg gcgtaactag tgactgtcgt
      901 tatgcggaag ataattacaa tgacgtatca aaaccggaag caaaacgtgc tttagatgta
      961 tatagctatc gtttagctaa atatattggt tcatatatgg caattttagg cgatgaccac
     1021 ttagatgcta tcgcatttac aggtggtatc ggtgaaaatt caggcttagt acgtgaatta
     1081 accttaaatc acttaaaatt atttggcatt aagttagatc aagagcgtaa ccttgctgcc
     1141 cgttttggta aagatggagt cattacagcg gacgagtcaa catttaaagc tgttgttatc
     1201 ccaactaatg aagaactcgt gattgcacaa gataccgcta aattagcatt ataatcatag
     1261 ggggcagata ttctgccctt tcactttctt ttaatttgga aatattatgt ctagaacgat
     1321 cattcttatc cctatttcaa ctggtgttgg tttaaccagt gttagcttag gtttagtaca
     1381 tgctttggag caaaaaggtt ctaaagtagg atttttaaaa ccgatttctc aacctatcag
     1441 cggtgaagat acgttagacc gctcaacaac gattatcaga gcagaacaaa caacagaggt
     1501 tggtgagccg tttatgttaa gcgaagctga aacattaatc ggtcaaaacc aaacggatgt
     1561 attgttagaa aaagtggtgg aacgccacca aaaattatca aaaaataatg aaattgtcat
     1621 tgttgaaggt ttaattccaa cgcgtaaaaa ctcatacgct aacagcatta actatgaaat
     1681 ggctcaagcc cttgatgctg aaattgtatt agttgcagca ccggcctcag atacaccagc
     1741 tcaattaaaa gagcgagttg aagctgccgc ttcacaattt ggtggacgta acaacccaaa
     1801 tttactgggc gttattatca ataaattcaa tgcaccagta gatgattcag gtagaacccg
     1861 tccagatttg actgaaattt ttgattcatt tcaacactca aataataatg tttcagaagt
     1921 cgagcatctt tttgctaaaa gtccaattaa gctgttaggc tgtattagct ggaaagcaga
     1981 acttattgct acacgagcaa ttgatgttgc aaaacattta ggcgcttcaa ttattaatga
     2041 aggcgaaata aaggctcgtc ggattcgcgg tgtgacattc tgtgcacgta acttaccaaa
     2101 tatggtcgat cattttaaag ccggtagttt attagttacc tctgcggatc gtcctgaagt
     2161 gttagttgct gcatcgttgg cggtaatgaa tggcatcgaa attggtgcta ttttactaac
     2221 cggtggttat aaaattgata gctcaattgc aaaactttgc caacaagcat ttgaaaccgg
     2281 tgtgcctgta ttccgtattg aaggtaacac ttggcaaacc gcattaagcc tacaaagctt
     2341 cagcttagaa gtgcctgtag atgataaaga gcgtattgct gcaattaaag aatatatggc
     2401 aagcaaattt aatgtaggtt tcattgatga ggtttctaaa gccgctactc gtgcaagacg
     2461 tttatcacct gcagcattcc gttaccaatt aaccgaatat gcccgtcaag cgaaaaaacg
     2521 cattgtttta cctgaaggag atgagcctcg tactgtgaaa gcggctgcat tatgtgctga
     2581 gcgtggcatt gcagaatgtg tgttattagc taacccaaca gacgtacaac gtgttgctga
     2641 agcacaaggc gtggtattag gtaaaggcgt aacgattatt gaccctgcga gcattcgtga
     2701 aaattatgtt gatcgcttag ttgaattgcg taaagcaaaa ggaatgactg aagttgttgc
     2761 tcgtgagcaa cttttagata cagttgtatt gggtacaatg atgcttgaag ctaatgaagt
     2821 ggacggttta gtctcaggcg cagttcacac aaccgctaac actattcgcc caccaatgca
     2881 gatcattaaa actgcaccgg gaagctctat tgtatcttct atcttcttta tgctactacc
     2941 tgatcaagta ttggtatatg gtgactgtgc ggtaaaccct gacccaactg cagaacagct
     3001 agcggaaatt gcgattcaat cagcagaatc tgccaaagcc tttggtattg accctcgtgt
     3061 tgcaatgatc tcctactcta ccggtacatc aggttcaggt gcggatgtag aaaaagtgaa
     3121 agaagcaact cgtattgccc aagaaaaacg tccagattta atcattgatg gcccattaca
     3181 atatgatgcg gcgattatgg aagatgttgc ccgctcaaaa gcaccaaatt cacctgtagc
     3241 aggtaaagca actgtatttg tcttcccgga tttaaatact ggtaatacca cctataaagc
     3301 ggtacaacgt tcggcagatt tagtctctat cggcccaatg ttacaaggta tgcgtaaacc
     3361 tgtaaatgac ttgtcccgtg gggctttagt tgacgacatc gtttatacta ttgcgttaac
     3421 tgcgattcaa gcaacgcaat aattccctcc caaatgaaac caaatgccct taaaactaag
     3481 ggcattttta ttttttacct acccgacttt tcaatttaat catataatca agattagtgt
     3541 taaaaaggag aatttatgga aaaaattgaa cgcttatttg ccaataacca cgcctgggca
     3601 actaagatga aagatgaaca atcggattat tttaaagaat tagcggaaca tcaaaagcca
     3661 acctatttat ggattggctg ttccgatagt cgtgtgcctg ctgaaaaact cacagggtta
     3721 ggccccggag aattatttgt tcatcgaaat gtagcaaata tggtgattca cactgatctt
     3781 aattgtctgt cggttgttca atatgcggta gatgtattag aaattgagca tattattatc
     3841 tgtggtcaca ctaattgtgg tggtatcaat gcggcaattg cacaaaaaga acttggttta
     3901 attaataact ggttgttaca tattcgtgat atctggttta aacacagcca tttactaggc
     3961 aaacttccct atgaagagcg atcaaatgtc ttgacccgat taaatgttgc agaacaagtt
     4021 tataatttag gtcagtcctc tattattaaa accgcttggg aacagggtaa atccctctcg
     4081 ctacacggtt gggtatacga tgttacagat ggtttcttga ttgaccaagg tgttatggct
     4141 actagccgag aaacattaga aattacctat cgtaatgcaa tagctaaaat aacaaccgaa
     4201 gcaaacgaaa aaatagtttt aaacgatgaa aattagccat tgtaagcggt taaatttatc
     4261 gattttttta caatcttttt ataaaaaacc attgtttgat ggttttttat tttcctgatt
     4321 cctgttatcg tcaaaaaagt tttaaatttc agcaaaagtg taaaatattg atttaa
//
LOCUS       DANLXK010000165         4375 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.166, whole genome shotgun sequence.
ACCESSION   DANLXK010000165 DANLXK010000000
VERSION     DANLXK010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            379..1020
                     /gene="sodA"
                     /locus_tag="PXD88_002415"
     CDS             379..1020
                     /gene="sodA"
                     /locus_tag="PXD88_002415"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL6281942.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(1083..2207)
                     /gene="alr"
                     /locus_tag="PXD88_002416"
     CDS             complement(1083..2207)
                     /gene="alr"
                     /locus_tag="PXD88_002416"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL6281943.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
     gene            2337..4298
                     /gene="recD"
                     /locus_tag="PXD88_002417"
     CDS             2337..4298
                     /gene="recD"
                     /locus_tag="PXD88_002417"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL6281944.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT         1369 a          830 c          925 g         1251 t
ORIGIN      
        1 tttattcttt cattatttca gccaattaaa acccgcacta tgttggtgac ataatggtgg
       61 taataatcgt tgtcatcata ttaaaacaat tcattggcgg aatctcggtc aagagagtga
      121 ataatggttc aagaatgcgt gaaaataatg cctttgtcaa tgggcttaac gctgtttttc
      181 accacatttt tttaaatttc tttgtctttc tatataaaac aattaaaagc aagaatttga
      241 ttaggaacct ttctaaatta gatagtgaaa taattttgtt ctagatcaaa aaaatgtgca
      301 ttttttgtgt gtttcttgat aaaatgtact cggagtttaa ctctgattaa cctatttact
      361 atttgagagg aattaactat ggcatataca ttaccagaat taggctacgc ttatgatgcg
      421 ttagagccac atttcgatgc taaaacaatg gaaatccacc attctaaaca tcaccaagct
      481 tacatcaaca atgcaaatgc agcattagaa gctcaccctg aattattaga aaaatgtccg
      541 ggtgcattaa tcaaagattt gagccaagtg cctgcagaaa aacgtattgc agtgcgtaac
      601 aacgtaggtg gtcatgtaaa ccacacttta ttctggaaag gtttaaaaac aggcactacc
      661 ttacaaggtg cattaaaaga agcgattgag cgtgatttcg gttcagttga agctttccaa
      721 tcagaatttg aaaaagcagc gactactcgt gttggttcag gctgggcgtg gttagtatta
      781 gaagagggta aattagccgt tgtttcaacc gctaaccagg acaacccact aatgggtaaa
      841 gaagtggcag gcgtttcagg ctatccgatt ttagtcttag acgtttggga acacgcttac
      901 tacttaaact accaaaaccg ccgtccggat ttcattaaag cattctggaa cgttgtaaac
      961 tgggacgaag ccgctcgccg ttttgaagaa aaagtagcaa cctgcggttg tgcgaaataa
     1021 tattttcgat cttgaataag atacaagcgg taaaatttgt tgaaaatttt accgcttgtt
     1081 gtctatttat attcaaaaat cacacgagga gtgagtttag taatcagctc atagctaatc
     1141 acgccaatgt gtttcgccac atcttcaatt aatagttgct ctccccaaaa aatggcttta
     1201 tcgcccactt tatcttggct ctctgcacct aaatcgaccg tcagcatatc catcgaaact
     1261 cgaccgacaa tcggcactat tctaccgtta atcaacacag gggtaccttc aggagcattg
     1321 cgagggtagc catcgccgta gcccattgca gtcacgccga gtttggtatc tttagggctt
     1381 acccaagcac caccatagcc tacaggctcg ccggctttat gggtacgcac agcgatcagg
     1441 gaagaggaga gcgtcattac cggcttaaaa cctaaatcgg taatcggcgt atagtgggga
     1501 gaaatgccgt gcataataat acccgggcga acccaatcat aatgagcctg tttccaataa
     1561 agaataccgc ttgaggcgga aatactgcgg tcgtgatcct gatatttttg cgtagcttgc
     1621 tcaaacaccg caatttgttt ttcggtatag ccacaatcga gttcatcggc acggctaaaa
     1681 tgactcacaa agctgattga attgaccaag gcacaatttt tcaaacgttc aacaaagtga
     1741 tcgacttgct ccgggtgaat gcctaagcgg tgcattccgg tgtcgatttt tagccaaatg
     1801 ttaatcggga agtagatttt cgctttacga gtccaaaagc ctttttgttg ctctgcctgc
     1861 cattcttttg ctacttgctc gagtaattcc agttgttcga ggttatgaat gacggtatca
     1921 aacttgcggg aaagggtttt gagtagctct tctcggtcaa aaaaaccttc aactaacaca
     1981 attttgcctg tgtatccggt ttcttgaatt tctaaggctt cacgcaaacg ggcaactcca
     2041 aagccatcaa ccatatctgc taatgtgccg gcagccggca ataagccttg cccgtaagca
     2101 ttggctttga tcatcgccaa taatttttgc tgtggagcga aagatttgat caggcgaata
     2161 ttatggcgga gggcttgact atcaatggtt gctgttgctg gtttcatact tatctacata
     2221 gttaaaatca caagaaaggc taaattatac gcctaaaata aaaaatccct tagaaaataa
     2281 tgcaaaaaag attagtatta tcacttaatg ttaggtggtc gatttaaggt ttgattatgc
     2341 tgaatttatt attggaactt aaacaagaaa aggcgatttc tgacttaaat tatcaatttg
     2401 cccgttttat tgataataag cagaaaccct atgggtattc gcctttggag caagatttag
     2461 ctgtgttagc cgctgcgttg gtttcttacc aagtgggact tgggcatacg gcattacgtt
     2521 tggaaaatct cagtctttct tctctttttg aattaaatag caagccacaa acttatcatt
     2581 tgctcgaaca aattttgcaa aaaattgagc aaattccacc gcttgaatgg cagagtgtgc
     2641 tgaaaaatca tatcgctttt agctattctc ccgaaacaat taaaccgatg ttattccaaa
     2701 acagcttgct ctatttttat cgctactggc aagcggagca tcgcattgcc ggttatttac
     2761 aacaagcggt tgatttttcg gaaaaatttg caaataccga attaaaccaa agcattctca
     2821 accaactatt cactgggaaa gctcaaacta tcgactggca aaagattgcc gttgcaacag
     2881 cattagaaaa gcagtttagc ttaatttcag gtgggccggg aaccggaaaa acaactacgg
     2941 tagtaaaatt attactcggg ctgcaattaa aacagcaagc actacagaaa ccatatttgc
     3001 aaatcgctct ggctgcacca accggaaaag cagcagcaag aatgaaagag tcgctggaaa
     3061 gcaagttggc ggaagaaaag gggttatctg aggagttaaa acgctctatt ccaactgaag
     3121 cagtgactat tcatcgcttg cttggtgcga gaccattaac tgagaaaacc aaatatcata
     3181 ccaaaaatcc gtggcactat gatttggtcg tattagatga ggcttcaatg attgatttat
     3241 caatgatgga gaaagttgtt caagcgctca aaccaaactc tcgcttgata atgctgggag
     3301 ataaagatca gcttgcttct gtggaagctg gttcaattat gggggaactt ggctctttta
     3361 ttgataatgg ttatagccaa tcccattgcg attacttaaa agccgttacc gactaccaaa
     3421 ttgaagccgg taatgcgttg ccgattggtg attgtttatc tcacttaaaa catagctatc
     3481 gatttggcga aaaagcctgg attggagagc ttgcaaatgc agtaaatgat caaaaaatta
     3541 acctttcgtg ggagattttc gacaaatata aaaacagtga taagttagaa aatttctgtt
     3601 atccggaaac gaaagagaca acggataaat caagctggat tgaaaaaagt gtgcaaatgg
     3661 tggtggataa agcggttgaa ctttatcgtg attatttaca agcggttcaa aaacgggaga
     3721 aaaatccaga ttcagtgagt gtgaaagcga tttttgagaa atttcaaaaa gtccgaattt
     3781 tatcagcctt aagggtaagt gaactggggg ttgaacgtct taatatggcg attgcggaag
     3841 gcttgcggaa agctagctta gtgaaattta atcatagccg agaccgctat atcggaaaac
     3901 cgattttaat gacagaaaat atgccgataa atagcatagc cagcggtgat gtcggcatca
     3961 ttttgccgga cgaaaatgga gaaagccgag tttattttga ttccttacag gaaaatagag
     4021 aacaccatag tttgcctcta ggtagggttt caaattatga agcagcttat attatgactg
     4081 tgcataaatc gcaaggttct gaatttgaac atacggtatt ggtgttgccc cattcgattt
     4141 ccccggtgct gacgaaagag ttgatttaca ccgcaatcac aagggcaaaa gataaattta
     4201 ccttatttgg tagcgaaaaa gtttggaaat acagtgttgg tgccaaaacc gaaagacaaa
     4261 gtgggctaaa agaacaaata agaggcaagt ttagctaaat taatactcgt tttgccgtaa
     4321 aaatacgcaa gcggtcattt ttttcaaatt ttttacaaaa accgcttgcg ttgtt
//
LOCUS       DANLXK010000166         4298 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.167, whole genome shotgun sequence.
ACCESSION   DANLXK010000166 DANLXK010000000
VERSION     DANLXK010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(24..641)
                     /locus_tag="PXD88_002418"
     CDS             complement(24..641)
                     /locus_tag="PXD88_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL6281945.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(654..845)
                     /locus_tag="PXD88_002419"
     CDS             complement(654..845)
                     /locus_tag="PXD88_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281946.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(848..1168)
                     /locus_tag="PXD88_002420"
     CDS             complement(848..1168)
                     /locus_tag="PXD88_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281947.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(1179..2060)
                     /locus_tag="PXD88_002421"
     CDS             complement(1179..2060)
                     /locus_tag="PXD88_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL6281948.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(2064..4001)
                     /locus_tag="PXD88_002422"
     CDS             complement(2064..4001)
                     /locus_tag="PXD88_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6281949.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(4016..4243)
                     /locus_tag="PXD88_002423"
     CDS             complement(4016..4243)
                     /locus_tag="PXD88_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281950.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
BASE COUNT          990 a         1156 c          801 g         1351 t
ORIGIN      
        1 taacattaaa agtaataaac attctaaacc cccgccatat ctaaactaat cggctgatac
       61 tttccgtttt catcacgttt ataaaaacgg atataacctt tactaccgat cacttgtacg
      121 ctatctgaaa tcgctgtcat tgcttgattc catcttgcat catcaatctc aacacggcgg
      181 agagagagaa tttttgctgt agataaatta ccttccttat ccacctcaaa cgcattatca
      241 attaaggcct taagctccgg ttttgcccct tccgaccaat cgtgcaagca ttcatcaatc
      301 aaggcttttg ctgcgtgaat acgctcatca aagcgaatat tctcttgcac tgctaactgc
      361 aacttatatt caccgtcata agtaaatagt gtgatattgc cttttgcacc gccaattttt
      421 actccatatt tgtcagccga taggctgaca aaagccccca cgtcatcaaa tacggattgt
      481 ttaaaatcac ctaacgcttt gcttaacgct tgtgctttgc ttacaaattg gcgaactaat
      541 tcatcacgtt ctttgtcgat ttcttttact aatgcctccg gctttaaatt gccatcagca
      601 tctttccagt aaatttcatt accgattgtt actttactca taatacttcc tctctattcc
      661 aacccgactt tcacggtgcg gattgcttta ccgttatatt tcactctttt gttgtgagca
      721 ggggacgaca taaaccgcac tgttttcgcc tccaccccca accgttctgc taactcttcc
      781 gccgtaccgt cagccacatt ctcttcgcca acatacaggg cataaatcat tcgccgtttt
      841 ttcatttcta caccttcgta acacgttcag actcccacac gcatttcacc ccccgcacct
      901 gcatttgata gctgtcatac cgtctgccgc ctttggtttt cattccaaac aggcttgcca
      961 agccgttctt gactaaatcc tgtgttttgc agttatcccg taagaccaag cggggtgggc
     1021 ttttcgcttc aaactccact cgttcaactt ccaactccat cgcctcacat tccaaagtgg
     1081 caatttctaa cttcacaagg ctgtcgtgga taaacgcatt taaggggttc atcatttcgc
     1141 ctgctttttc gctgtaaacc ttttgcataa cttgctcctt agctaatcaa catcttgcta
     1201 tattgctcaa ccaaatcttt actaattggt gtttggttaa tctcgctaga ccgcaccacg
     1261 ccacgcatta acttacttaa tcggcgggca ttgccgtgac aagctttaat tagcggggca
     1321 ttaaattcat ttgtacctaa cgcactttcg gctaatagcc ccaaatcttc ctcgctcaag
     1381 gcatttccca aatcacaagc aaaacctact cggctataaa gctgtgccag ctcattattt
     1441 ttacctttaa gattaaccaa caatctcggc ataccggcta acaccacgcc cacgctggtt
     1501 aaatcgtgga ttcggcggat aaactccagc gagcgggtcg aaagtaattc agcttcatca
     1561 atcattagca acctttcaga gccttttaac ttgttcacaa tgctttctaa tagttcgtta
     1621 tttacccctc tggcatttgc ccccaccgcc tcggcaatct tgcggagcaa gactttaggt
     1681 gtgcaactcg gatcaacctc aattaatgtt gcagagctgt ttctgcgttc gtattctttg
     1741 agcatttggg ttttacctaa gccggctgcc ccaaaaatca cattaatttc gccttcaata
     1801 tgggcaaact gcattacctc cattcctctg cgtgccgcca aagttggcac aaaagcagcg
     1861 ttatatttcg cttccaccac ttttgcctta tcacgctcaa tcagctcgtc tactttgcga
     1921 tccatttcag ccacattgcc gttataatcg cctttgagat acagactgac tgtggcaacg
     1981 gatacaccta aaagctgtgc cacttgtttt tgttgatagc ctttgctatc cattaaggct
     2041 ctaagttctt ggtttttcat cgtttagcct cccactgcta actttttttc gtaatcctct
     2101 ttttctgctc gggtcaaaaa aatcggttct acttcttttt tcggttttct tgccgttgcc
     2161 agcaagctaa aatcgttttt ctgctcaatg gttaaaaccg ggtttaattc cgcattaatc
     2221 tcatcaagct gttgctgttt aaggttggct cggcgtttat ggcgttcttt acgctgctgt
     2281 tctaccatcg ccaccgggaa tgcctctcgg gtgttaccgt tccaaattgc ctcgcaaata
     2341 aacctgccgt ctttggtacg cacctgcacg ctctcggcat tgtgaatatc aatcccgatc
     2401 accacttctt cacggtcaaa atccagtaat ttcaagttaa aatagtggtt gttattccaa
     2461 cttacccaac ctcgatccgg cttacggata aattccggtc ggctcatatc ccgcaactca
     2521 atagggctta acatcaccac atcttctgcg tgcaacatct gctgatattt gcgtgccggc
     2581 gtggtacgga tttccgagtg aatatgctcg ttgttgtacc agtcaatcac cgattggatt
     2641 acttcaatca actgttgcca cgttggcaat ttgccttggg ctttacgttg tagtggggtt
     2701 aattcccctt tggcatttgc cagtgagttc accgcataca gggttttgcg aacggtttcc
     2761 ggatctgcac cggttgcata gccggtttca aactgtcggg caatcgtcat accgatggtt
     2821 ttatttaagc gttcaataat gcctcgcccc tgcggattgc ccgcaatccc tgtttcgtgt
     2881 cggataccga ggcggggcaa catccccgtg atttccgcat ccaaaaattt attcttttca
     2941 ccaccaccgt tatccgagta gtagattgcc ggcacaccgt gtaggctaat ggcgtggcgt
     3001 agtgcatcag ccaccgcaaa ggcgttctca ctgagtgcca gcgaccagcc caccactttt
     3061 ctaccagcac catcgacaat cattgtcagc tcaggggtaa acggcttacc gtgtatcggg
     3121 tgggctactt tgagcttcag tgagtgaccg tcaccaatcc atacatcatt tgctcgaagt
     3181 accgaccaat cccgcttcac atagctcagt aactgcttgt aatgcgagcc ggtgcgtctg
     3241 ccgtactctt tcacatacaa cggcaactta ttcatcgctc gctgtacttg gcttaggctg
     3301 gggcattgtg ccaacagtag cgggttgtct gcatactgat acgcccattc cacctcaaat
     3361 tctcggtagg cttcggtgag gcaaataccg tttttctgcc gatatacgcc taaaaaagca
     3421 cttagccacc aaatttcttc cggcttggtc tcctgccgta cctgtggggc aagcagtttc
     3481 aaccgttgct cggcgttctc tgccttgcag taatccacca cccagccgtt taaggttcgc
     3541 accgagagtg tgcgttttgc cgtcttttta gcatttgcta cggcaaccag ctccgccaag
     3601 tgcggtggca tttcgccttg tttggcaagg ttgcaaaggt aggttatcgc tttaatccgg
     3661 ctcattgagc cttccaactc caacacatac gccaccagtg ccattcgtgc atcagcaatt
     3721 tctcgctgtt tggtggtcag gtttcccaca tccacctctg cacgcactac cggtaacttt
     3781 ttcggcttgg cttccaccac cgccgacata aagcgggagc ggatttcggt ttgaacttcg
     3841 gtgggtaaag agttaatgtg atattcaaaa ccacctcctt taaccccttt caatggacga
     3901 gttgcccatt gttctttttt ggcttgtcta gttacatttg ttgggtattt tgataagcca
     3961 ctaatacctg ctaattcttt tgcactaaac caatctttca taacagctat ccttgttatg
     4021 caacatcagg gtaacgacta ggccatattt cggctggcgt ttttcctaat gcttttgcga
     4081 taatttcttc accgttttta taaggtttat caagagcatt tcttactgtt gttttggaaa
     4141 gcccattctc aatccctaac tgagaaaatg ttattccttt cttcatcaat tcagctcgaa
     4201 tatcagctct atgcatatct tgagctcttt tctttttatt cattttgtga gatcctccac
     4261 atttagttta tttgctacgc tttagcgtac ttgattaa
//
LOCUS       DANLXK010000167         4275 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.168, whole genome shotgun sequence.
ACCESSION   DANLXK010000167 DANLXK010000000
VERSION     DANLXK010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4275
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>4275
                     /locus_tag="PXD88_002424"
     CDS             <1..>4275
                     /locus_tag="PXD88_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281951.1"
                     /translation="NTTNVDLKITIGTRQYSHSFNGKYSSQYLESVVFDNLPPVPFNI
                     SVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGISFDSEYFNNIPTRNYLI
                     KAKKVKVPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEIYDLAPILSKMLGVEISFDKW
                     ALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYDLLNDFCSVFRAIPIWTGTEV
                     SVIIDRPRDPVWTYTNANVVGGFERSYSARKSRHNAVQVTYSDKTNGYESAIEYVSDD
                     EEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKETITFTVGREGLMHLPGDI
                     IRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFTYINGEATHSSKIQSVNGK
                     EITLDSTPTGLETYGVWSLSTKQISSGLYRSISIVENADGTNTITALQHEPQKEAIVD
                     NSAHFVETARTLYKAPQINAVEVSTGYDGKLYITGDISSGDGKLTYDIKITKDGNLYQ
                     YKKGLSDPNIELSDLPNGDYTVIIYGKNAKGQIVTEKTQTFTIDRPPAPTGVVVTGGL
                     GQITLEWDWVNEVTQTEIFAAETDNFALAKKIAKVTARTYAHTLKGNKVVRYYWLRHT
                     RGINVGPFYQQQGVRGQTAVDLDARLTELNTQLSRNIVNEVFDVAAPARGLELVKTVA
                     NLTDKGTKLASSQVYNQADGKLYTWNGTAYSATVAAEDVTGKLSKSKIDTSLISQLTG
                     ADNTANLARRLAETAQSNINQEITNRQDAVTAEANNRTKAIQAESANLTKKIQAEATA
                     RGAAVTQLQNVDAQQAQLISAVTAKADNALSGLEEEKTARANADKAESQAREALTARM
                     GAAESNIVTIQRTVANNAQSISEVSQNLNAKIDNINIGGRNLLRDSEFNAYNKWGSPQ
                     IEFAENANRRTIKVTSTGTNGPVGIVSSNRHSTSYFQQGETYTLSLFARGSKALDYLY
                     LMRQDGNNVRLPVINVASETEFNHYKLTFKAPFTTQQGYVLIGFRQTSTEQFVEFHSV
                     KLEKGNVATDWTPAPEDVESAVSAVSADLTSYKQTQAATDSAQAQQLNQLSVNLTKAE
                     TNFNAKITEEKKARVDADKVNADKLTDITSRVANAESTITNFQSTKANKSEVASIAQQ
                     NLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGGSSRVASSQYGDRRLTQVFVT
                     QAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFTRTGLNYVYLIREDGGNFRL
                     PTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEATDWFAFHSVKLEMGNVATGW
                     TPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISGLTTRMGAAESNLTRTERAVT
                     ELNQTTVTTLRDLTARTKTTEGSLSRLETAKANKTEVASIAQSSLQS"
BASE COUNT         1347 a          929 c          966 g         1033 t
ORIGIN      
        1 aataccacca atgttgattt aaaaatcacg attggcacac ggcaatattc gcatagcttt
       61 aacggcaaat acagctcgca ataccttgaa tctgtggtgt ttgataacct gccgcctgtg
      121 ccatttaata tctcagttga gcgtctaacc gaggatagca attcgcaacg cttacaaaac
      181 ggtacaattt ggagtagtta caccgaaatt atcgataccg agtttaccta ccctaattca
      241 gcggttgccg gtatcagttt tgattcggag tattttaata atatcccgac ccgaaactac
      301 ctaattaaag cgaaaaaagt caaagtgcca agcaattatg atccagttaa acgcacttac
      361 accggctttt gggacggcac atttaaagtt gcgtggacga acaaccctgc ttgggaaatt
      421 tacgatttag ctccgatttt aagcaaaatg cttggggttg aaatcagttt tgacaaatgg
      481 gcgttgtatg atgttgctcg ctattgcgat caacttgtgc cggacggtat gggtggaatg
      541 gagcctcgtt tcacctgtaa cgtatggctc acggaagtta aaactgccta tgacttgttg
      601 aatgatttct gctcggtatt ccgtgcgatt ccgatttgga ccggaacaga agtatcggtc
      661 attatcgacc gtccgcgtga tccggtttgg acttacacaa atgctaatgt agttggtgga
      721 tttgaacgat cctactctgc tcgcaaatca cgccataatg cagtgcaagt tacttattcg
      781 gataaaacaa atggctatga aagtgcgatt gaatatgtct ctgatgacga ggaaatcaaa
      841 aagcacggct taaatttaag tcaaattact gctttcggtt gtacctctcg ggggcaagca
      901 caccgtaccg gaaaatggat tttggaaacc gaaaaacggg aaaaggaaac cattactttt
      961 accgtgggac gtgagggctt aatgcacttg ccgggcgata ttattcgtgt ggcagacagc
     1021 cattatgccg gtacggaaat tggcggacgt gtactggcga ttaatgggcg aaaagtcacg
     1081 ttagatcgtg aaattagcat tgataacgcc agttatttta cctatatcaa cggtgaggca
     1141 acgcactcta gcaaaatcca atcggtaaac ggcaaagaaa ttacgctgga tagtacacca
     1201 accggcttag aaacctacgg tgtttggtcg ttatcgacta aacaaatcag ctctggatta
     1261 tatcgctcaa tctcgattgt cgaaaatgcg gacggcacaa acactatcac agcgttacaa
     1321 cacgaaccgc agaaagaggc aattgttgat aactccgctc actttgtgga aacggctaga
     1381 acactctaca aagctccaca aattaacgca gtggaagtct cgaccggtta tgacggtaag
     1441 ctctacatta ccggtgatat tagctccggt gatggcaagc taacctatga tattaaaatt
     1501 accaaagatg gcaatttata tcaatacaaa aaaggcttaa gcgatccgaa cattgaacta
     1561 agtgatttac ctaacggcga ttataccgtc attatttacg gcaaaaacgc caaagggcaa
     1621 atcgtcaccg aaaaaacaca aacctttact attgatcgac ctccagctcc gaccggtgta
     1681 gtagtaacag gtggattagg gcaaattacc ctcgaatggg attgggtaaa tgaggttacg
     1741 caaaccgaga ttttcgcggc cgaaaccgat aatttcgccc ttgcaaaaaa aatcgcaaaa
     1801 gtgaccgcta gaacctacgc tcacacacta aaaggtaaca aggttgtacg ctattattgg
     1861 ctacgtcata ccagaggcat taatgtcgga ccgttttatc aacaacaggg ggtaagagga
     1921 caaacagcgg ttgatttgga tgctcgatta accgaattaa acactcagtt atcacgcaat
     1981 attgttaatg aggtttttga tgttgctgca ccggcaagag gtttagaatt agtgaaaaca
     2041 gtcgctaatt tgaccgacaa aggtactaaa ctggcgtcat ctcaagttta caatcaggct
     2101 gacggcaagc tctatacttg gaacggtaca gcatactcag ctacagtggc tgcggaagat
     2161 gttaccggca aattatcaaa atctaaaatt gatacgtccc ttatttcgca attaacaggt
     2221 gcagataaca ccgcaaattt ggcaagaaga ttagcggaaa cagctcaaag caacattaac
     2281 caagagatta ctaaccgaca agatgccgtt actgccgaag caaataaccg tactaaagcc
     2341 attcaagccg aaagtgcgaa tttaacgaaa aaaattcaag ctgaagcaac cgctcgtggg
     2401 gctgctgtta cacagttaca aaatgttgat gctcaacaag cacagttgat ttctgctgtc
     2461 acagcaaaag ctgataatgc tctttcaggc ttggaagaag aaaaaacagc acgagcaaac
     2521 gccgataaag cggagtctca agcacgtgaa gcattaacag caagaatggg agcagctgaa
     2581 agcaatatcg taactattca acgtacggta gcaaataatg cccaaagcat tagtgaagtc
     2641 agtcagaatt taaatgctaa gattgataat attaatatcg gcggtcggaa tttattaaga
     2701 gacagcgagt tcaatgcgta caataaatgg ggtagcccac aaattgaatt tgctgaaaat
     2761 gcaaatcgcc gaactatcaa agtaacctca acaggtacta acggtcctgt tggtattgtt
     2821 tcatctaatc gccattccac atcttatttc caacaaggag aaacttatac actctcatta
     2881 tttgctcgag gaagtaaggc actagactat ctctatctaa tgcgtcaaga tgggaataac
     2941 gttagattac cagtgattaa cgttgcctct gaaactgagt ttaatcatta caaactcacg
     3001 ttcaaggctc cttttaccac gcaacaaggt tatgtcttaa tcggttttcg gcaaaccagc
     3061 acagagcagt ttgttgagtt tcacagcgtc aaacttgaaa aaggcaacgt agccacagac
     3121 tggacaccag caccggagga tgtggagagt gcggttagtg ctgtttcggc tgatttaacg
     3181 agttataaac aaactcaagc ggctaccgat tcagcacaag cacagcaact taatcagtta
     3241 tctgtgaact tgaccaaagc agagactaat ttcaacgcca aaatcacgga agaaaaaaaa
     3301 gctcgtgttg atgcagataa agtgaatgca gataaactca cagacataac aagccgtgtt
     3361 gcaaatgcgg aatcaactat taccaatttc caatcaacca aagcgaataa aagtgaggtg
     3421 gcaagtattg cccagcagaa cttacagagc atttggcgca ccgatgcgca aagtgcggtg
     3481 gatgccttga aaatcggtgg tgcaaatcta ctggttgata gtgagtattt gacgacagcc
     3541 cgttggggcg gtagctcacg agtggcaagc tcgcaatatg gtgatcgtcg cttgactcaa
     3601 gtgtttgtga cccaagcagg cacagggcat tttggtgtga ctcaaggcac acaaaaagcc
     3661 actacgcgta ttcgtcaggg tgaaacctat accttgtcac taaatgcgca ggggacggca
     3721 ggttttaccc gcacagggtt aaactatgtg taccttatcc gcgaagatgg tggcaatttt
     3781 agattgccaa ctttgccgct tactgcatca ttgtcccaac gccctaaagt gacatttact
     3841 gcgccgtgga cgagcaatca agttcggtta ctgattggcg caaatggcat atttgaggcg
     3901 acagactggt tcgcatttca cagcgttaag ctcgaaatgg gtaatgttgc cacaggctgg
     3961 acaccaaccg ccaaggatat tgacgacaaa gtatcagcgg ttcagtccaa cctcaccgct
     4021 tatcaggcgg cacaagctaa agcagatcaa gccaaagcta cgcagatttc ggggctcaca
     4081 acccgaatgg gggcagcgga aagtaacctc actcgcaccg aacgggcagt gacggaactt
     4141 aatcagacaa cggtgacgac actgcgtgat ctaaccgcgc gcaccaaaac aacggaaggt
     4201 tcgctctctc gtttggaaac cgccaaagca aataaaactg aggtggcaag tattgctcaa
     4261 agctccttac agtca
//
LOCUS       DANLXK010000168         4210 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.169, whole genome shotgun sequence.
ACCESSION   DANLXK010000168 DANLXK010000000
VERSION     DANLXK010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4210
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            133..2067
                     /gene="iolD"
                     /locus_tag="PXD88_002425"
     CDS             133..2067
                     /gene="iolD"
                     /locus_tag="PXD88_002425"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL6281952.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            2194..3090
                     /gene="iolE"
                     /locus_tag="PXD88_002426"
     CDS             2194..3090
                     /gene="iolE"
                     /locus_tag="PXD88_002426"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL6281953.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            3092..4102
                     /gene="iolG"
                     /locus_tag="PXD88_002427"
     CDS             3092..4102
                     /gene="iolG"
                     /locus_tag="PXD88_002427"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL6281954.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
BASE COUNT         1233 a          917 c         1030 g         1030 t
ORIGIN      
        1 tcgcagaaat gagaactgga tcacatcttt ttttcgattt ccttgctatt ataaatgaaa
       61 taaatttttc atttgtaaaa atcagtagaa aaccgaccgc ttgcaaaagc gatgtaagcc
      121 agaggaggct ttatgcagac tactcgttta acggttgcac aggcgttagt gcaatttttg
      181 gataatcaat atttagacgt ggacggcaaa gagattaaat tcgttcacgg tgttgccgct
      241 attttcggcc acggcaatgt gctgggaata ggtcaggcgc ttgctcaaaa tgccggtggt
      301 ttaacgctct accaaggcag aaatgagcaa ggtatggcac atttggcgat gggctttgct
      361 aagcaaaatc tgcgtcaaag aattattgcc tgtacttcct cggtcgggcc gggggcggca
      421 aatatggtta cggctgcggc aacggcaaca gcgaaccgta ttcctcttct tttattaccg
      481 ggcgatgtgt ttgcgacccg ccagccggat ccggtactgc aacaaatcga acaaccttac
      541 gatttaagca ttagcactaa cgatgcgttc cgtgccgtca gtaaatattg ggatagagtg
      601 caacgccctg agcagttaat gagtgcttgt atcaatgcgt ttcgtgtgct gaccgaccct
      661 gctgaaaccg gtgctgtcac cattgctctg ccgcaagatg tacaagcgga gagttttgat
      721 ttcccgaaca gcttcctgca aaaacgagtg catcgcttag agcgtacacc gccgacaaca
      781 gcgatgatta agcaagcggt aacattaatt caaaccaaga aaaaaccgct gattgtctgc
      841 ggtggcggtg ttcgctactc gcaagcgggt caaattctgc aaaaatttgc taaacagttc
      901 ggcattccat ttgctgaaac ccaagcgggt aaaagtgcgg tggtgtccga tcacgcattg
      961 aatgtaggcg gagtgggaga aaccggttgt ttagcggcaa accgtctggc aaaagaagcg
     1021 gatttagtga ttggcattgg tacacgctac accgacttca cgacttcttc caaatggatt
     1081 ttccaaaacc caaacgtgca gtttttgaac attaatgtgg cacgttttga tgcgtacaaa
     1141 ttagacggcg tgcaactggt tgccgatgca aaaactgcat tagaggcgtt aagccaagcc
     1201 attcctactg attatcaagc tcaatgggag aatgaaattt cacaggcgaa agcggatttt
     1261 gctgatgaaa ttcaacgcct gcgcgctgtg caatatcacc ctgatttcac ccctgaaatt
     1321 aacgataatc ttgatcataa agcggttcac aatgaattta ttcagctcac cggttcccag
     1381 ctcacccaaa cccaagtgct gggtattgtg aatgaaacca ttgataacaa tgcgattatt
     1441 gttgccgccg ccggaagttt gccgggtgat ttacaacgca cttggttaag taaaggtgaa
     1501 gagacttacc accttgaata tggctactcc tgtatgggct atgaagtgag tgcggcagtc
     1561 ggcgtgaaaa ttgcccgccc cgaacaagag gtctatgcct tgctggggga cggctcttac
     1621 ttaatggcac acaccgaatt agtgacctca attcaagagg gcaaaaaaat caacgtggtg
     1681 ctgttcgaca atatggcaaa cggctgtatc aacaacctgc aaatcggcaa cggtatggac
     1741 agtttcggta cggaattccg cttccgcaat ggcgaaacta accaactcaa cggcggttta
     1801 gtgccgattg attttgccaa aaacgccgaa gcatacggct gcaaaaccta tcgggtaact
     1861 aacgaagccg aattgcgtgc cgcccttgat gatgcgaaaa aacagaccgt ttctacctta
     1921 atcgatatta aagtgttgcc gaaaacaatg gctcacggct atggctgctg gtggcacgtt
     1981 ggtgtcgcgg aagtgtcaga gagcgagcgt attcaacaag cccgccaacg ctccgaagag
     2041 cagttagcta aggctcggaa gtattagtta aaaaaacaac tccccacttt gagctacgag
     2101 gggagaatat caagcggtca aatttgcaaa atttttgata aaaataaccg cttgcatcca
     2161 aatttatctc tataaatcaa acgaggtttc tctatgaaag ctgaaaacat tcaattaggc
     2221 attgccccaa tcggttggac gaacgatgac ctgccggaac tgggagcgga aaacactttc
     2281 gagcagtgtg tgagtgagat ggcacttgcc ggctacacgg gctgtgaagt gggtaataaa
     2341 tatccgcgtg atgttgccgt gttaaaacac aaactggacg tgcgtggcat tcaaatctgt
     2401 aatgcgtggt tcagcacctt ctttgtggac ggtaaacggg aagagaccat tgccgagttc
     2461 atcaaacatc gtgatttctt gcatgcaatg ggggcaaaag tgatcggctg ttccgaacag
     2521 agccgtagta ttcaaggcac aaccaaatct gtgttcaaag aaaaaccgat tttcaacgat
     2581 gaagattgga aacgtatggc agaaggctat aacgaattgg cgaaacttgc cgccgaaaaa
     2641 ggaatgaaag tctgcctgca tcaccatatg ggaaccggta ttcaaacacc cgaagaggtc
     2701 gatcgctata tggcagaagt gaatgacgat gtctatctgt tgttcgattc agggcatttg
     2761 tactattccg aaggctgcca aaaagcgatg ctcggcgtac tggaaaaata tatcgaccgt
     2821 attatccacg ttcacttaaa agatgtgcgt gatgaagtca tggcggaagt aaaagcaaaa
     2881 gatttaagct ttttagaagg cgtgaaaaaa ggcaccttta ctgtaccggg cgatggtgtc
     2941 attgatttcc gtccgatttt cgatatttta gaaaaacacg actacaaagg ctggatggtt
     3001 gtagaagccg aacaagatcc ggcacttgcc aacccgtttg aatacgccct caaaggcaga
     3061 aaatatatcc gtgaaaccgc aggagtttaa tatgttaaaa gtaggtatta ttggtgcagg
     3121 ccgtattgga cgtgtgcatt ctgaaagtat tagcaaatat gtcaaaggtg ctgaaatcaa
     3181 agcaatctct gatgtaaaaa ttaccgaaga attgaccgct tgggcaaaat cgatgggtat
     3241 tccggaagtt tatgatgact ataaaaaaat cctgcaagat ccggaaattg atgctgtatt
     3301 ggtctgctct tccaccaaca ctcacgctcc gatttcgatt gaggcagcac aggctggcaa
     3361 acacgttttc tgtgaaaaac cggtagatgc agacccagct aaaatccgtg aagtattgag
     3421 tgcagtcgaa aaagccggtg taaaattcca agtgggcttt aaccgccgct tcgaccacaa
     3481 cttcaaggcg attaaagacc gtgtggcggc aggcgacatc ggcgaaccgc acgttatccg
     3541 agtaacctct cgtgatccgg aagccccgcc aatcgaatat gtgaaagtct ccggcggaat
     3601 gttctttgat atgaccattc acgacttcga tatgattcgt tatttatccg gcagcgaagt
     3661 ggaagaagtg tttgcagtcg gcaccgtatt agtaaaccct gaaatcggca aagcgggcga
     3721 tattgatact gccgttatca cgttgaaact gaaaaacgga gcaatcggcg taatcgacaa
     3781 cagtcgcaaa gctgcctacg gctacgacca acgtgcggaa gtgttcggct cgaaaggggc
     3841 aatccatatc actaatgata ccggctcaac tgccgtattc tcaggtgaaa acggcgtggt
     3901 ggcggaaaaa ccaaaatact tcttcttaga acgttatatg caatctttcg ccgatgaaat
     3961 cagctgtttc gtagattctg tggtaaacga caaaccaacg ttagtaaacg gcaatgacgg
     4021 cttacaaccg gtacttattg ccttagctgc gaaaaaatca ctggaagaaa accgaccagt
     4081 gaaattgagt gaagtggcgt aattgatcat aaatacaagc ggtcggtttt actcgctaca
     4141 ctcgcacttc gtgccatcgg catagccgat gttcaaacgc aagcattttg cagaaaaatt
     4201 tgtaaaactg
//
LOCUS       DANLXK010000169         4146 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.170, whole genome shotgun sequence.
ACCESSION   DANLXK010000169 DANLXK010000000
VERSION     DANLXK010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4146
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..303
                     /locus_tag="PXD88_002428"
     CDS             <1..303
                     /locus_tag="PXD88_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281955.1"
                     /translation="LDEHLNEFILGNGGDEIEKISKNNKTQFSSTIRENQINFIRALL
                     YMDYGIETPQEVKNAINSGELGRKIEKFRRENPNIENDKNFKFPTSVTLSNWYSKA"
     gene            381..632
                     /locus_tag="PXD88_002429"
     CDS             381..632
                     /locus_tag="PXD88_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281956.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            632..1012
                     /locus_tag="PXD88_002430"
     CDS             632..1012
                     /locus_tag="PXD88_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6281957.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1323..2384
                     /locus_tag="PXD88_002431"
     CDS             1323..2384
                     /locus_tag="PXD88_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL6281958.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2377..2541
                     /locus_tag="PXD88_002432"
     CDS             2377..2541
                     /locus_tag="PXD88_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281959.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2534..3169
                     /locus_tag="PXD88_002433"
     CDS             2534..3169
                     /locus_tag="PXD88_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281960.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3163..3381
                     /locus_tag="PXD88_002434"
     CDS             3163..3381
                     /locus_tag="PXD88_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281961.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3523..4008
                     /locus_tag="PXD88_002435"
     CDS             3523..4008
                     /locus_tag="PXD88_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281962.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1514 a          852 c          790 g          990 t
ORIGIN      
        1 cttgatgaac atctaaatga gttcatatta ggtaacggcg gagatgaaat agaaaaaata
       61 tcaaagaata acaaaactca attcagctca acaatacgag aaaaccaaat caattttatt
      121 agagccttgc tttatatgga ttatgggata gaaacgcctc aagaagtaaa aaacgccatt
      181 aattcagggg aactaggcag aaaaatagag aaatttagga gagaaaaccc caatatagag
      241 aacgataaaa atttcaaatt ccctacaagt gtaaccctta gcaactggta ttcaaaagcc
      301 taaaatattg gaaatttccg aatctacttt ggaaatttcc aaacttctaa aacctactca
      361 cctcacaatc tcccccaaca atgcaactac aaaagacaat aagcacattc acgcaaccaa
      421 accacagggg gatttatgta atgacctatt cagaacaaag ctatttaaac gtgaaagatg
      481 tatgcgaaat gctacaactc aaccgctcaa ctatttatcg acaaattaag caagggattt
      541 tccctaagcc aactaagatc ggaaaatcaa gccggtggaa atttgccgac atcaaagcat
      601 ttttagagcc aaaaccacag gaggcgaact aatggcaggg ctttctatta tttgcccgtt
      661 ttgtggcaat accgcacgaa ttagaggcag ttctcgccct agccttttaa gttatcaagc
      721 acagctaact tgttcaaatt gcggacaatt aaaagccgac tttgtagggc agctaatcaa
      781 catcaaacgg gccgtattta ttgagtgtga tgaagcaaat caatgggata aacccgaaaa
      841 tgaactaatc aaggagggaa aaattcaagg caaagacaat gctcaacgcc tcaaagaact
      901 aagaggctca cagcaagatt tatttgcaaa ggtgccgggg caactaccgc ccgagaagat
      961 cactccggcg gagaaaatcg ccaagcgggc aaacctttca aaaacgcatt aaacaggggg
     1021 ataaatggca acaaaaaagc cccgcaaggc aaaccatacg gagctattaa aatcgcataa
     1081 tgcgaaagat atgcaaagaa attaaagcag gcttgacgat ttctgaaggt gttagattct
     1141 ttctaaagtc tttagggata ggtttatttc tagcattgtt tttttatttt ttgccgtatt
     1201 tagcagaatt tataatcgcc gtaaaaaaac aactagcaaa aaaatcggct tactttcaat
     1261 gataaaagca agccgaaatg acaatccaaa tttttaactt taaataaaga gtacaagaag
     1321 aaatgaaaga tttatctcca aatcagaaac aatatacgcc attttcggct ataatgcaaa
     1381 aaaatttaat ggatttattg acaaaatccg cccgttcgcc ttattctttc tctaccgttg
     1441 caaaatcaac ggcagggcgt gagaaccctg aactacataa tacggcgaac agtagcacgc
     1501 ctttaacccg tgctattttt attcgtagct tacacacacc taaagaacgc cgaaataagg
     1561 cgtgttcgtc tatggtagcg tgtagcgggc aaggttcgcc cttggctgtt tttggttcgc
     1621 cgtttgtagc agttttctca ccccgttaca cgctatcgcc ctgcaccgtg agaagtgtag
     1681 ccgatagtcc tttaaaatta acaaacggac tacaaaaaat gaaccctagc caaattacag
     1741 gcaaaaaccg cctaaactct tttctattta acaataatca aaatgattat tcgctattat
     1801 ttactaatgc aaaacaatca accccgattt ctgctaaaat aagcaaaaat caagatttat
     1861 gcttgacaac cctcaatcgt tcgccttatg ctagccgtgc ttttgcaaaa tcaaaagccg
     1921 agtgtggaaa ctcgaaagaa catcaggcga acaatagcac gcctttaact cgtgcttttt
     1981 ttgttcgtag ctcacgcaca cccaaagaat gccaaaataa ggcgtgttcg tctatggtag
     2041 cgtgtagcgg gcaaggtttc gcccttgact gcttacctga tgttgcagtt ttccaccccg
     2101 ttacacgcta tcgccctaca ttgtggaaaa tgttagcgat agcccctaaa aatcaacatc
     2161 aggagctatc aaaaatgaaa gcattcgctt attcattcct ttgtgctatt cgcacacccg
     2221 aaacagatac ttatcaagaa accgtagtac gcattatttc agacagcgaa caaaacgccc
     2281 gttttcagct tacagccgat tatcgcttac tactcccccg ccctgttgca aaaatccgcc
     2341 taaattctac cgcttacacg gtgaaagggg ggatttatgc ttaattattc cgatattgaa
     2401 caaatccgct attttatgga tcaagccgaa gaggctttag acaataatga agagttcaaa
     2461 gccgtagcag aacttaacac agcacaacaa tttattctgg ctttattaat gaactacgaa
     2521 caagggggtg aaaatgaata atacaacagg acaagctacg caaagaaact ggcaagaaat
     2581 tatcgctaat ttgcagagac tcagcgaatc cggggaaagc acaatcgaaa tcgctaaacg
     2641 ctatgaggca ttttctaaaa ccgccgagca aatccaagcc ctagtgaata acaacggcag
     2701 cgaagccgaa aaagaggcgt tttttgcccc tgttgagcgt ttttatcttg gcttactaga
     2761 aaccgaaaca cgcttaaaag atgccatagc caaagacgaa gaaaacgccc aaaaattgaa
     2821 agagcaaaaa gcagctagag aggcagagca aaaaagatgg gacaacctac ctttctacgc
     2881 caaagacaaa ttcagtgatt taatttgcat tgaaagccga gaaacgcttg aagataaatt
     2941 ctttgcgatc tcttgtatgt tcgatgccct aaaagccgta cctaatctat tagaaatagg
     3001 cttgcgtgaa gaaggcaaag acagtgttat agaccgatta gccgaaatga gcaaactcta
     3061 tttactgttt gtagatgagc aattttcact actggcaaac gaaattcaaa gcggtaaata
     3121 tggcaagtta gacctaaacg gctcacagaa taagggggat ttatgctaac gcaccgcatt
     3181 acactccctg acggcacaga aattgaattt tttgcagaaa ccgacaaaga aacatttgca
     3241 gaaattcaaa gggacttaga gggcttgaaa ttgccaacct ttgccgagtt tgttgcccaa
     3301 gagcggaaaa aacaccgagc aaaacaagcg gtcaaaaaag cccgaaaaat tgcaaaatta
     3361 gcaagacgga aaaaccgcta gcacctatca aaaagactta ttattgcaga aaatcacgct
     3421 ttaataaaaa cgacctataa agcaatccgc aagaaatggt taagtttaac tgaaaatatg
     3481 agcggacagg ttcagcgggt agcgtgcgat agattcgcaa taatggaaac cgccttgcag
     3541 ttagcccaac atttaacagg ctggacagag gaagagaaca gccaagcgat tttaaaaaac
     3601 ttcctagact ggaaagaaac tttcggcgaa aaaacaagag aagaaactaa aatagtagaa
     3661 accttgctag attggataaa tgaaaatgag gcgagtttta tcgagtaccc attcaaccaa
     3721 gagcaaagaa caccgcctaa agttgccggc tatagaatac ttgcgaataa cagcactaaa
     3781 acaaatgagt actttttcat ttaccctaag caatttaaag aaacgctggc agaatttccg
     3841 ctattgatgg cttgcaccaa gttacacgag gcagggattt tacataagcc accacgccca
     3901 gaaaaaggct atgaatttca gtacacaata gcccctaaaa taacaggagg gagcaaaaaa
     3961 agagcttata aaatcgtacc gatagcattg gaagaagaaa acgagtaatt acagcaaaag
     4021 caagagtttc aattcttgct ttttttatac ttcaaacaaa ataaaaataa atacaaatta
     4081 aaaatttata gggaaaatag ggaaaaaata agaagaatat agatatatca aggttttata
     4141 gatttt
//
LOCUS       DANLXK010000170         4127 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.171, whole genome shotgun sequence.
ACCESSION   DANLXK010000170 DANLXK010000000
VERSION     DANLXK010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXD88_002436"
     CDS             complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXD88_002436"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL6281963.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1903..2151)
                     /locus_tag="PXD88_002437"
     CDS             complement(1903..2151)
                     /locus_tag="PXD88_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL6281964.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2275..2319
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2323..2991
                     /gene="queC"
                     /locus_tag="PXD88_002438"
     CDS             2323..2991
                     /gene="queC"
                     /locus_tag="PXD88_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL6281965.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2984..3406
                     /gene="queD"
                     /locus_tag="PXD88_002439"
     CDS             2984..3406
                     /gene="queD"
                     /locus_tag="PXD88_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL6281966.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3406..4032
                     /locus_tag="PXD88_002440"
     CDS             3406..4032
                     /locus_tag="PXD88_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL6281967.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1253 a          757 c          875 g         1242 t
ORIGIN      
        1 tgagtgaaga gtagaggtaa aatagtaagc ctttttaacc agtttattta ttgtacctat
       61 tttagaaaaa agaaaagtag aaaagagata ttaggtaaac tcatagtgca aaagaatata
      121 gaaaaaactg cttgtgtaga aatggcgctt agttcagtcc tcagctaaaa ttttagaaaa
      181 aaagcataga gattttttac ctctatgctt tttattgtat tgactatatt taacgccaag
      241 ccttgaattg gttaattaaa ccatttgtgg agctgtcgtg gctgttgatt ttttcatcgg
      301 tttcgagttc gggtaaaatg cggtttgcaa gctgtttgcc taactccacg ccccattggt
      361 cgaaactgta aatgttgaac agcacgcctt gcacgaagat tttgtgttca tacattgcaa
      421 ttaatgcccc taagctgtac ggggtgattt tttgcaccaa gatagagttg gtcggtttgt
      481 ttccgctgaa cactttaaac ggcacgattt cagctacttc ttccaacgtt ttacctgcat
      541 ctaaaaactc tttttcaact gtttcttttg atttaccgaa agctagtgct tcagtttgag
      601 caaagaagtt agaaagcagt ttgttgtgat gatcgcttaa cggattgtga gtttgtgccg
      661 gtgcgataaa atcacaagga attaattttg tgccttgatg aatgagttga tagaatgcgt
      721 gctgaccgtt agttcccggt tcgccccaaa taatcggacc tgtttggtga gtaaccggtt
      781 tgccgtcacg ccccacaaat ttaccgtttg attccatatt gccttgttgg aaataagccg
      841 caaagcggtg catatattgg tcgtaaggta aaatcgcttc tgattcagca cctaagaaat
      901 tgttattcca aatgccgact aaagctaacg tagttggaat gtttttctca atcggcgtga
      961 ttaagaaatg cttatccatt gcgtgagcac cagcaagtag ctgctcgaag ttctcaaaac
     1021 ctaatgaaag ggcaatcgaa agcccgatgg cagaccataa tgagtaacga ccgccaaccc
     1081 aatcccagaa ttcaaacata ttagcggtat caataccgaa tttttccact tctttggcat
     1141 tggttgaaag tgccacgaaa tgttttgcta ccgcagattc atctttggca gaatcaagta
     1201 gccatttgcg agctgaaagg gcattggtca tcgtttcttg agtggtaaag gtttttgaag
     1261 ccactaacac taacgtggtt tcaggattaa ctttacgcaa cacttcagca atatgcgtgc
     1321 cgtccacgtt agacacaaag tgcatattaa ggtgattttt ataagggcgt aatgcctctg
     1381 ttaccatata aggacctaga tccgagccac caataccgat attgatcaca tcagtaatcg
     1441 ttttgccggt atagcctttc cattcgccgg aaataacacg ctcgcagaaa tctttcattt
     1501 tcgctaacac ggcattcact tccggcatta catctttgcc atcgactgcg attggtgtat
     1561 tggcacggtt acgcagtgca acgtgcaata cggcacggtt ttcagtgcgg ttgatttttt
     1621 tgccggagaa catcgcattt tttgctgatt ccaaaccaca ttcatttgcc agttggcgaa
     1681 gtaaggttaa ggttttttcg ttgatcgcat tttttgaaaa atcgactaat aattgatctt
     1741 caaaacggag ggaatatttg tcgaaacggt ttggatcttc ggcaaaaagt tgaggaatag
     1801 aaaggttgtc tgctttatgt tgctctaagg cattccaagc aaaagtttgc acagggttaa
     1861 ttttttgcat ctgagtttcc ttatactaaa ttaaaaaatc gattattcat ctgttctttg
     1921 agtcagttca tcaagacgtt tttctaattc ggttaatttt tcacgagtgc ggagtaacac
     1981 ttgagattga acatcaaatt cttcacgagt gacaacatca agacgggcta attgggcttg
     2041 aaggatttgc ttaaattttt catctagatc attaccgaca ttttttaagc tttgcggtaa
     2101 ggcgttatgg agttgttgag caatcgcttc taagttcttc ggcgtgagca tatttaaatt
     2161 ccttactata aatgagtatc ccaattttat tgaattttgg gtttaagaga aagcaaattc
     2221 tttgtaaaat atcacctttc gcaaaataca agcaaaaaag accgcttgta ttttttattt
     2281 gtggttcgta aacctcccac acaaaaaaac taaggacaca aaatgactca tcaaaaacca
     2341 aaagccgttg tgattttttc cggcggtcaa gactctacca cttgtttatt ccaagctatt
     2401 gctgaatttg gcaaagaaaa tgtggaagtc gttacctttc aatatgggca acgccattcg
     2461 attgaacttg aaaaagcacg ctggatttct aacgatttag gcgtcaaaca aacgctgatt
     2521 gatacttcgg tgattaaagc gattactacc aatgcgttaa tggataataa tgctgaaatt
     2581 caacaacaag gcagcacacc caataccttt gtggatgggc gtaatgcctt atttctgctt
     2641 tataccgcca tttatgccaa agggcagggc attcaaacta tttttaccgg cgtgtgtgag
     2701 accgatttta gtggttaccc tgattgccga gatgtatttg taaaatcaat gaatgtaacg
     2761 ctaaatttag cgatggacta taatttcaac attcgcacgc cattgatgta tttaactaaa
     2821 aaagaaactt gggcattagc agataagctg ggtgcttttg attatattcg agaccatacc
     2881 cacacctgtt atttaggcgt tgaaggtggt tgccacgact gcccgagttg cgtattgcga
     2941 gaaaaaggct tgaatgaata tttagcagaa agggaggtaa gcaatgttta aaattgctaa
     3001 agaatttagt tttgatatgg ctcatatgct agatggacac gatggcaaat gccaaaactt
     3061 acacggacac acctacaaat tgcaagttga ggtggcaggt gagctatttc aagagggagc
     3121 taaaagagga atggtaatgg actattcgga tctaaaagca gtggtaaaac aacatatttt
     3181 agagccgatg gatcacgctt ttatttacga cttacagagt gagcgtgaaa gccaagtagc
     3241 acaattatta attgatttaa actccaaggt ttatggtatc ccaactcgta ccacagccga
     3301 agaaatggcg aaatatatgt ttgaaaaatt agagaaagtg ggcttaccgg ttagcctaat
     3361 tcgcttgtgg gaaacgccta cttcttattg tgagtacagc aaataatggc ggagttaatt
     3421 tcaaaccctc gttttccgat tgttgagatc tttgaaagct tacaagggga aggctttaat
     3481 accggaatgc cggctatttt tgtacgtttt ggcaaatgca acctcacttg cccgtggtgc
     3541 gataccaatt acaatcaatt tgagcaatgg acgttaagcg atattcttgc caaagtaaga
     3601 agctattctg cgaaaaatgt gattattacc ggaggcgagc caacgattca gcctaattta
     3661 tcgttattat tagaacaatt taaaaaagag ggatattttt tagcgatcga aaccaacggc
     3721 ttaaaagagg ttccggcaca aattgattat attgcgacca gcccaaagcg aatgtaccaa
     3781 gaaaagtatc aacgccgttg cattgaattt gcgaatgaag tccgtatcgt cgttgatgga
     3841 gaagtacagg gtttctgtga gcaaatagaa agccaaatta aagctgagca ttactatctt
     3901 tcaccttgtg aggtagaggg aaaaatgaac ttgctggaaa ccatcaccca gattgggtta
     3961 ttaaatcagc gtccaaataa gcctaaatgg cagctaagta tccaaacgca taaaattgtg
     4021 gggattgaat aagtagaagt tagaagatga tttgtaaaag atcagacttg atctgacaat
     4081 tcactctaaa aagtgagagt ttcccgttta gaatatgagt gtccaaa
//
LOCUS       DANLXK010000171         3977 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.172, whole genome shotgun sequence.
ACCESSION   DANLXK010000171 DANLXK010000000
VERSION     DANLXK010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            322..699
                     /locus_tag="PXD88_002441"
     CDS             322..699
                     /locus_tag="PXD88_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6281968.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            851..1543
                     /locus_tag="PXD88_002442"
     CDS             851..1543
                     /locus_tag="PXD88_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6281969.1"
                     /translation="MAINNKATTLNLSNTFKVSPFKDGEWEAILGFNRLKNRYSKNRH
                     PAELNYNLENGETSENNDSVGMTAVRKSLYTSTFQPDGEQKFDTFYLDNHFNYGIWGL
                     DINANINTARFIGQRFKYFPFAIRELESDIRQASRNRQFEHLRSLQSQLDNLQKNIVH
                     IFQMRIFLMILNWESLTVLMSIFLIQQQENINELIIQQPCLLIFTIYSRPLLVILKHI
                     EPLILKKYSSLI"
     gene            1429..2205
                     /locus_tag="PXD88_002443"
     CDS             1429..2205
                     /locus_tag="PXD88_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL6281970.1"
                     /translation="MNYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVN
                     TALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYNTHLKNYIYNVQHTAVGSAPSL
                     FIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTNQPVSFTDASSRVDAASHYG
                     FKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAKYYGKSKRIAIDEFNYTYYP
                     GTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLEL"
     gene            2809..3303
                     /locus_tag="PXD88_002444"
     CDS             2809..3303
                     /locus_tag="PXD88_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL6281971.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
     gene            3558..3797
                     /locus_tag="PXD88_002445"
                     /pseudo
     CDS             3558..3797
                     /locus_tag="PXD88_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT         1346 a          633 c          746 g         1252 t
ORIGIN      
        1 tgcaataaag gcacacttct ttcttcagtg tctttagcgt tgcgatttaa atttaattac
       61 attttttata ggaaagacaa tagaaatgaa gatcaaaaaa tatgtatttc acctgactta
      121 tacaacactt atctgcccct tacctagggt attcgcagag gaaggttata tgttagatac
      181 ggttgaggtt aaagcccaag caataaaaaa acagatgaag ttttcattaa aacaggggca
      241 ataagcaccc gagataaaat cttggaatca aaccaaagct tagagactat tgttcgttct
      301 atgcctggcg catttacaca aatggataaa tctcaaggtg tggtttctgt taatattcga
      361 ggaggttctg gatttgggcg agctaataat gcagtaggcc caaattatat gggaatgctc
      421 gctggcaaat accaattcaa tgactctact tggataggag cattatttgg gcatagttgg
      481 cgcaaaatct ctcaaaatta taaaatagga ggcggacgaa aagttacgga tagctcgatt
      541 gaccttagta aaattgatga tctagataaa gaaagttcta ccacctcacc gttcaatgca
      601 gctcatttaa aacaaaaacc aatgagtcgt atggctaaat tggaatatgg cgataaatac
      661 caaaccatca cactattacc aaagtcaggt agcgggtaga catttaaaaa accaaaacaa
      721 ccagttaaat tatcgttttc acttgcccga gtcaccttgg ttagatgttc aagtggccta
      781 tgcggaaaat caaggcaaac aaaactacaa caaagggagc tgaattaata ataaatattt
      841 aattcaaggt ttggcaatta acaacaaagc gacaacctta aatttgagta acacctttaa
      901 agtgtctccg tttaaagatg gagaatggga agcaatatta ggttttaatc gtttaaagaa
      961 ccgctatagt aaaaatagac atcctgcgga attaaactat aacttagaga atggcgaaac
     1021 cagcgaaaac aacgattctg taggaatgac agccgttcgt aaatcgcttt atacttcaac
     1081 tttccagcct gatggcgaac agaagttcga tactttttat ctcgacaatc actttaacta
     1141 tggtatatgg ggattggata taaacgcaaa tattaatacc gctcggttta ttggtcagcg
     1201 ttttaaatat tttccttttg cgattagaga attggagtca gatattagac aggcaagtag
     1261 aaataggcag tttgagcatt taaggtcatt acaatctcaa ttagacaact tgcaaaaaaa
     1321 cattgtacat atattccaga tgaggatttt cctaatgatc ctgaattggg agagtttaac
     1381 tgtcctgatg tcaattttcc tcatacagca acaggaaaac ataaacgaat taattattca
     1441 gcaaccttgt ctgcttatat tcacgattta ttcacgccct ttattagtta ttctcaaaca
     1501 catcgagccc ctaatattaa agaaatattc ttctctaatt taggtgacta tggtgtaaat
     1561 accgcactac aaccagagca agcgaaaaca acacagtttg gtattaatgg attcaaagaa
     1621 cgggtattta gtgaagaaga taaattagga tttaaagtgc tattttataa cactcactta
     1681 aaaaactata tttataatgt acaacatacc gctgttggta gtgctcctag tttattcatt
     1741 ttccacaaaa actatgaaaa accagtaaat atcaaaggga tagaattaga atttagttat
     1801 gatataggct ctttctatgg caacttagct tatgctcgtc aaaatacgaa tcaacccgta
     1861 tcctttacag atgcaagttc aagggtagat gccgcttctc attatggttt taaaactcaa
     1921 ggttttggtg ccagcaaaat ttcagcgtta ccaagagact atggctcatt ggagttaggg
     1981 acaagatggt ttgatcaaag actacaaatt ggcggagtgg caaaatatta cggaaaaagt
     2041 aaacgtattg cgatagatga gtttaactat acttattatc ctggaacaca tattgtgaaa
     2101 gaaactcatc ggcttgaaga aaccgtaaat aaacaaccta ttattgttga tttttacgtg
     2161 agctacgaac caatcaagtc gcttatatta aagttagaac tataaaatgt ctttgacaaa
     2221 aagtacattg atcctcttga tgctaataat gatgcagcaa gtcagagggt ttacaattct
     2281 gatatcagtg atgaacctat ttatacgctc aataattatg caagagggag aactatagtg
     2341 tttagcacaa gttataaatt ctaaatgggg ttgtcctaga taagctagct taaatttcct
     2401 ttaactaatt atttggcata gtgactaaaa ttgagtctgc acagtaggtt aaaaccttat
     2461 aatataagga tttaacccag atggtgcaag cgtccacgct tgtgccagtt aattcctgtt
     2521 ctgaaagtat ttcagtcata agataaaagc ctaaatcagc caagtaaaat ttggtttatt
     2581 tgggcttttg tttttggcac aagcgtggac gcttgcgtca tcattttatt tatccatcca
     2641 ttgctatcat ttcagtattt ctttggctta tcacaagcgg ttaaatttta tcaacacttt
     2701 gcaagtttta atgatttttg cgatctagat cgaaaaagtt atattggctt gtggaattta
     2761 attttgaata gggtattttt cttattcctt tttaagttga gaaaggctat gagccgaaaa
     2821 tataaattcc acgaaaagag cggtgcttat tttgtcagtt ttgcaactgt ttattgggtt
     2881 ggtgtgtttg tgagagagat ttattttcag gtaattgttg atgccttaga ttactgcaga
     2941 aaacataagg gaatgatttt gtatgcctat tgtattatgc caactcatat ccatttatta
     3001 tttcaagcag aaaatcaaaa tccttctgat ttaatacgag atttcaaaac attcaccgct
     3061 aaaatactta ttcagagaat taaagataat ttgcaagaaa accgtcggga atggttgctg
     3121 tggatgtttt ctcgggcggc tgaacgacgt tgtaatgtaa aacaatatca attctggcaa
     3181 catcataacc aacctattga aatctattcg cagaaattct ttgatgaaaa gttaaattat
     3241 attcatcaaa atccagtggt aagtggtttt gtgtctgagc cttgggaatg gaaatataat
     3301 tgaaataaac tgcttgtatt tttgcgatct ctgtcgaaaa attgtgaatt tttacttgtc
     3361 tgtcggagaa ttttgcgtaa attctgctta ttatgtttta gttaaaggta ttctatgagt
     3421 agataaccca aatgaaaata gcgatataac ctatttctac ccagtaatta attcccgctt
     3481 ttatgtatca gatcaaataa tttacattga tttatcggta ttatctgtct ttagtttttt
     3541 taattaagga gccttatatg aaattcaaaa aattagcatt agcagcaatg ttaggtggct
     3601 tatttgtaac agctaatgcg gcagaattac ctaatatcac tattttagcg acaggcggaa
     3661 cgattgctgg tagtcagcag aatgcaaata gtagtgctta tcaagcaggg caattgaata
     3721 tcgaaacctt aattgaagca gtgccagaaa tgaaaacatt ggcgaatatc aaaggtgagc
     3781 agattgtgaa aattggccca ctaaagcctt gttagatgta ggctatcaag gtattgtcgt
     3841 agcaggtgtt ggtaacggca atatgagtgc ggaaaatctt gcattattta gaggaagcca
     3901 acaatatttt taagattttt aataaacgtt aaagcatata aaaaatggca taagtgagtc
     3961 acttatgcca ttatttt
//
LOCUS       DANLXK010000172         3956 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.173, whole genome shotgun sequence.
ACCESSION   DANLXK010000172 DANLXK010000000
VERSION     DANLXK010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3956
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            8..2083
                     /locus_tag="PXD88_002446"
                     /pseudo
     CDS             8..2083
                     /locus_tag="PXD88_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            2127..3563
                     /locus_tag="PXD88_002447"
     CDS             2127..3563
                     /locus_tag="PXD88_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL6281972.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQGKLIQKAQQPL
                     SLSIIFPDQSSRLLAQNVFGEQDFMFKSELIGTATFSILANGATVSDQDFTLTIERHI
                     PISAQIAPPKVIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQS
                     RVTFLWRGATKNARIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTL
                     PVDENTQRRALLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTE
                     APNIAKGKLQQLIFESATLGNKHRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKT
                     ILDNMIAQKVILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTK
                     ERIIGGSSYGGLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKE
                     KLPLCFFISAGFYESGKSAICKRSNYFA"
     gene            complement(3705..3884)
                     /locus_tag="PXD88_002448"
                     /pseudo
     CDS             complement(3705..3884)
                     /locus_tag="PXD88_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011625997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
BASE COUNT         1295 a          795 c          736 g         1130 t
ORIGIN      
        1 taaactaatg aaaataaaaa aatattcact ttctctaatc actttagcga ttgtagctcc
       61 tcaagtatta gcagaaacaa cctctcaagc agaactaaat gctattgagg tcaaagagaa
      121 attggcagct accaccggct atattcctgt ttatacgact gtaggaacga aaacattaac
      181 ctctttggct cgtacacctt ttagtatcaa tgttgtctct gatgatttaa tgcatgacca
      241 agctgttcgt tctgttaccg attcagtggc ttatacctcc ggtatgatgg gtggctatcg
      301 tggtaacaat tcgcttatcg aaatctccat tcgaggcatt ggcaataaaa gtgatggcag
      361 tacaattccg acctatttaa acggttctcg ctaccaaact gcatttgaaa tcgatccgtt
      421 cttcttagaa agtatcaatg tgattaaagg tccaaactcc attttatacg ggcaagctaa
      481 tcccggtggc gtaatggata ttatcaccaa aaaagccggc agtaacccac atcgccattt
      541 gcaatttgtg gtgggaaacc atcaacgata ccaaatcggg ctggatattg aagaaaatct
      601 ctccaatacc ttatccgctc gtttaatcgg tcaattagaa cgaacaaact ggaataccta
      661 atttgtaaaa gaaaaaggcg gtgcttttgc tccaagcatt ttatggaaac cgactacaaa
      721 tacagaactt aatgtttacg cttactatgc aaaaaaaccg aaagccggtg atcgtaactt
      781 tttaccgaaa gaaggaacga ttaatagcgt aaacgggaag gaactaccct atgatatgtt
      841 cctcagcgat ctgaactatc acggtttaaa agccgaacaa atgcaagtag gttacagttt
      901 ctcacataaa tttacgccaa acctaacgtt ccgccaaaat gcaagttacc ataatggcga
      961 agagaatttc aaaaatctag tttattgggg cgatgtcggt tcggttttag aacgtagagc
     1021 tcgccattgg gatgtcaaaa cccaagaaat caacttagat aaccaattag aatgggtatt
     1081 tagcacagca aatataaatc ataccttgtt agccggtatt gattataaac gagtgcgtaa
     1141 agatcttgat aactatatgg ggattgcccc tgattttgat tggcagaacc ctgtttatgg
     1201 cgtgaccgtt actgagccta gcttattttc aagtgaagtg aagcatttaa aacaacttgg
     1261 ggtttatcta caagatcaaa tagaaatcgg taattttgac ttcctgttag gcggtcgtta
     1321 cgatcgagca aaaaacagca accaagatcg tttgaacagt aaaacagaga ataaccaaga
     1381 aggaaaattt acttggcgta caggcgtagt ttacaacttt gaaaacggta tcgctccgta
     1441 tatcagctac agcacttctt ttgtgccatc ggctgaaaaa gatgctcaag gaaatttctt
     1501 aaaaccaaca actgctgggc aatgggaagt gggaatgaaa taccaaccta cccaagacac
     1561 cttactgacc ttagcaggat ttaaaattac acaaaaagat ttagccaatt atcaatggca
     1621 aacccgctct tatgagcaaa ttggtgaagt gcaaaccaaa ggaattgaag tgagtttaaa
     1681 tcagcaatta tccgataaat tttcaatagc ggcttcttat gcttacttaa aaaaagagat
     1741 tactgcagat aaagatggca cgacgattgg aaaaacgcag tggggagtgc ctcgccatca
     1801 agcatctctt tgggcaaaat ataaattctt tgataagctg accgccggtg taggtgtacg
     1861 ctatatggga acgacttttg gcgataacca aaatactttt accgtaccgg catacacact
     1921 ttacgatatg atgctagctt atgattttat gcctaactta aacttacagc tcaacgcaca
     1981 aaacctgacg aataaaaaat atgtcgcaag ctgtgccaat aatttttcct gtttctatgg
     2041 aaaagatcgc aatttaagtg caacgttaaa ctatcatttt taatctcaac agccctcaaa
     2101 tgagggctta aacttttgca aaaaatatga aaaaaacgac cgcttgtatt cttacttttt
     2161 tggtttcatc tgtgctttat gctaacaata taaccattga gcttaaacag aatgattttg
     2221 tgcaaggcaa attgattcag aaggctcaac agccactttc cttgtcgatt atttttcctg
     2281 accaaagctc tcgcctgctg gctcaaaatg tctttggtga acaagatttt atgtttaaat
     2341 cagaactaat cggcacagct actttttcta ttctagcgaa tggtgcaacc gtttcagacc
     2401 aagattttac cttaacgatt gagcggcata ttccaatctc ggcacaaatt gctccaccta
     2461 aagtaattga aaatacacag cttgaagaac tcagccaaaa aattgcaaaa aatccagaaa
     2521 aacagaccgc tttaattaac gatttttggg ataaagcaaa acaagccggc acaccattga
     2581 ttgaaccatt ggacgaacag caaagccgtg taactttttt atggcgtgga gcaacgaaaa
     2641 atgcccgtat ttggggcggt gtgagtactg aacacgattt tatgcaacgc tttggtgaaa
     2701 cggatatatg gtataaaagt tatatagtgc ccaatgacac tttagtggaa tacaaattag
     2761 ctccagatgt gccgacattg cccgttgatg agaataccca acgcagagcg ttactggcta
     2821 cggctcaagc cgatccactc aataaaacag catacttcga gaaaatcgga caaaatattc
     2881 ataataccga taaattcaac tacgcttcgc tacttaaatt gccaaacgca cctactcaat
     2941 cttttttgac tgaagctcca aatattgcaa aaggtaaact gcagcagttg atttttgaga
     3001 gtgcaacact cggcaataaa cacagattat tcgtctatct gcctgacggt tttagtgcag
     3061 aaaaaaacta tgcggttctc tatttatttg atggtgttga atataccgaa cgagtgccaa
     3121 ctaaaaccat tttagataat atgatcgctc agaaagtgat tctgcctact gtagcggtgt
     3181 ttatcgaaaa tccatcgagt gaatcaagac gtgtcgagct gcctgccaat cccatattta
     3241 cgcaagtatt ggcaaaagaa cttgtacctt ttgttgaaaa acagctcaat ataaaaacaa
     3301 aggagcgaat tattggcggc tctagctatg gcgggctatc ctctgcttac accgtactca
     3361 actatcctaa tgtatttagt aaagcattga ttctatccgg ttcattttgg tggcaaccca
     3421 aaggcacacc tagtgaacaa agccactata ttgctcaaca atttatccaa aaagaaaaat
     3481 taccactctg ttttttcatc agtgcaggtt tttatgaaag cgggaaatcg gctatttgta
     3541 agcggtcgaa ttattttgca tagaattaca ctcaattttg catagataaa aattaaaaac
     3601 tatgcaaaat aattgtagaa gatcaaacct aatctgacag tcccccgttt taaattaccg
     3661 tgtctgtcag attaatttga gcttaaattc ttttccaccc aaacgcgtct attttgattc
     3721 agcaatgctt caacaccacc ttgctcaacc gcttgttgat aacgatagaa tgtatctcgg
     3781 ctcattccca ttactttgca ggcttgagaa atattaccca gttcttctgc taaatttaat
     3841 aaaccgctct tgtgtttaat gagagggttg ttagaataaa acatgagagt ttcctttttg
     3901 tttagattga tttttgacac tcatattcta aacgggaaac tctcactttt tagagt
//
LOCUS       DANLXK010000173         3950 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.174, whole genome shotgun sequence.
ACCESSION   DANLXK010000173 DANLXK010000000
VERSION     DANLXK010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(334..1428)
                     /locus_tag="PXD88_002449"
     CDS             complement(334..1428)
                     /locus_tag="PXD88_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL6281973.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1562..2740
                     /gene="lpxB"
                     /locus_tag="PXD88_002450"
     CDS             1562..2740
                     /gene="lpxB"
                     /locus_tag="PXD88_002450"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL6281974.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2767..3819
                     /gene="sohB"
                     /locus_tag="PXD88_002451"
     CDS             2767..3819
                     /gene="sohB"
                     /locus_tag="PXD88_002451"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL6281975.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1173 a          681 c          856 g         1240 t
ORIGIN      
        1 gactgtcaga ttaggtttga tcttctacat ataataaccc ctcatcactt tttgcagttt
       61 aacctctttt gcaacagata atttaaattt aggcgttttg gctgctcagt tattgccatt
      121 atgattatat tagttcacac taaaatttta gtgttgtttc ttaaagctga agatgctaat
      181 aggtgagtaa gcggttttta ccactttgaa gataaatgca atagcttctt gtttgaagga
      241 ttagttgtat ttaatcataa aaaatctgca ccttaatcag ttggttagcc caacttttag
      301 gtgcagatca ttctagtacg cttttcagtt ttattaccaa tatgctcgta agcctacaac
      361 agtcgtataa ttgcgagatt ttgcggtttt tacatcatta gtatagtgtt tagcacgagt
      421 tgcttgccat tcaacaaagc cttttaagtg ttttggaaca atgtaatatt ccgttcccaa
      481 cataaattgg tttcttttaa ctttgctatc atttgccaag cctacagcat taagtttgtt
      541 ttctttataa gcatacattg tgtaagcatt ccattgatcg gttaaacgat ggagtaacac
      601 agtgcgaact tctttttcga tacgtttgtg accgatagca ttttgatctt ccgtttcacg
      661 gcgttctaaa tctaagccaa gggtagtttt tccgtaggta taagctgtac cgaaggcaag
      721 agcaatgcgt tcataattgc cgatagattg ctcagaacgc tcacgggttg cacctgttgc
      781 taattttaag ctttggttat catcaatttt atagttataa attgctgctg caccccaaat
      841 atctttacgt ttattgacta aatctaagcc attgtttcca cgttggctat ttccgccata
      901 gaatgctccg agttttaatc cttcgatgcc tttgtaaaca tattgaagcg tacgtcgtga
      961 tgaaccggta agtaagccat cacttaagct gagtgtattt ggtaagtcag tttgttttac
     1021 ttcatcggca atattagtca tattgccgta tgttaattca ccgtattgtt tatgcccgat
     1081 tcctgcatag agttgatgat cataaatatg atcgaagtta tgttgtgagc ttgaatcgcc
     1141 acgcatacgc cattccacac gacctaaagc atagaatccg tgacccactt gctgggttaa
     1201 acggaaacca aaacgagagc cgttgttatc cactgcgtga ttaacgtggt tgcgggtagc
     1261 tttaccattt accggtgagg ttttatctga ggtgctttcc cacttaatac gagcagaacc
     1321 aataaattca atttgtgtac cggtttcttt atgatcgtaa atcgtaatag ctagagctga
     1381 gtttgcgatt aaggctgatg ctaaaatcgc taatgttgtt tttttcataa aaatcactcc
     1441 atatgaatag ataaagggag gtagtgtatg tgaatattca ttgctagaca ataatgtttt
     1501 gttagtttat atgatgattg gttataatag agtcacttac agatcttcaa taatatttaa
     1561 tatgaaacaa caattccccg ttattggctt agttgctggt gaggtctctg gcgatattct
     1621 tggtgccggg ttaattaagg cgttaaaagt acattacccg aatgctcgat ttatcggtgt
     1681 tgcaggctct cgaatgattg aggctggctg ccagtctttg tttgatatgg aagagctttc
     1741 tgtaatgggg ctagcagagg tggttaaaca tttacctcgt ttacttaagc gtcgtaaaca
     1801 ggttattgat gagatgctta aattgaaacc agatgtattt atcggtattg atgcaccgga
     1861 ttttaattta accgttgaag aaaaactcaa agcgagtggg attaaaacaa tccattatgt
     1921 tagcccttcg gtgtgggctt ggcgacaaaa gcgggtgttt aaaattgcca gagcagctaa
     1981 tttagtgttg gcatttctgc catttgagaa agcgttctat gataaattca atgtgccttg
     2041 tcgttttatc gggcatacga tggcagatgc gatcccactc gaaccaaatc gtacagaggc
     2101 atgtttagcg ttaaatattg atgaatccaa gcgatatatg gcaattttgg tgggaagccg
     2161 tggcagtgaa attcagtttt tggctgagcc ttttttgaag gctgctcagt tgttaaaagc
     2221 ccgttttccg gatttacagt ttttagtgcc aatggtcagc caaaagcgaa tggagcaatt
     2281 taatgcaatt aaacagcaag tagctcccga gttggaactg aatattattc aaggcaaggc
     2341 tcgtcaggct atgattgcgt cagaatgtac tcttttggca tcgggaacag cagcactaga
     2401 ggcaatgttg tgcaaatctc cgatggtagt tggttataga atgaaaccgc tgacttattg
     2461 gttagcaaaa aaattagtga aaaccgatta tatctcctta ccgaatttat tggctcaagc
     2521 cccattggta ccagaattga tccaagaagc atgcaacccg gaaaatttag ctcaagagtt
     2581 atctctattt ttagctgatg atgagaaaaa ccaacaacat aaagcattgc taaaacagca
     2641 gtttatgcag ctacatcaat caattcaatg taatgctgat gagcaagctg cccaagcggt
     2701 tatcgatctc ctaaacggct cgacaagcgg tcaaatttag ttagtttttt gtaaaaagga
     2761 aaatttatgt ggaaagaagt attacttaat tatggtattt ttttattaga gttattaact
     2821 gtatttggca ttattgcagt ggtggtgatg ctgattttgg aatcgaaaaa gcagaatgaa
     2881 aacggctcaa tttcaattac caatttatct gagaaatata aagagcagca aaaatctctt
     2941 tccggctttt ttctaagtga ggaagaatta aaacatcagg aaaagcagga gaaaaaagta
     3001 gcaaaagaga aagctaaagc agaaaaaaaa cgcttaaaag caggcgaaga atgtgtagaa
     3061 agcccttccc gtttatttgt attgaatttt aatggcgata tgatggctca cgaagtaaat
     3121 tccctacgcc gtgaaattga tgcggtaatt agcctcgcga atccggaaaa agatgaagtt
     3181 ttacttaaac ttgaaagtcc gggcggagtg gtgcacggtt atggattggc tgcttcgcag
     3241 ttacaacgtt tgcgtgatcg caatatttat ttaaccgcag cggtagataa agtagctgcc
     3301 agcggtggtt atatgatggc gtgtgtggcg aataaaattg tctctgcccc atttgcggtg
     3361 attggctcag tgggggtggt ggctcaggtg ccgaatatcc accgcttact gaaaaaacac
     3421 gatattgatg tggatgtgat gactgcaggt gaatataaac gcacggtgac gctggtggga
     3481 gaaaataccg aaaaagggaa acagaaattc cagcaagaac tggaagaaac gcactctctg
     3541 tttaagcaat ttgtggctcg acaccgccca caactggata ttgagcaggt tgcaacaggc
     3601 gagcattggt ttggtcagca agcgattgag ctaaatttgg ttgatgagat tgcaaccagt
     3661 gatgatctgc tcctcaatgc aattaaggaa aaagaagtga tcgagctaaa atataaagag
     3721 aagaaaaaac ttgctcagaa attgggttct caattcgagc aatcagcaga gaacctgctc
     3781 gctaagattt tacataaaag tcgttcaacg ctgatgtagc gtatatatta ttaaagggct
     3841 atcgtttata tagcccctta ttttatcagt tagtaataga atgaagtatt tgttcactat
     3901 ttaaatgacc tggaatactt ttctttaaat tgagtgaaga atctaacaat
//
LOCUS       DANLXK010000174         3736 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.175, whole genome shotgun sequence.
ACCESSION   DANLXK010000174 DANLXK010000000
VERSION     DANLXK010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..1094)
                     /locus_tag="PXD88_002452"
     CDS             complement(<1..1094)
                     /locus_tag="PXD88_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL6281976.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPD
                     YPVIKDKPKKVIILLIGAFIGLMISCLSIIL"
     gene            1243..1584
                     /gene="erpA"
                     /locus_tag="PXD88_002453"
     CDS             1243..1584
                     /gene="erpA"
                     /locus_tag="PXD88_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL6281977.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(1689..2012)
                     /gene="yidD"
                     /locus_tag="PXD88_002454"
     CDS             complement(1689..2012)
                     /gene="yidD"
                     /locus_tag="PXD88_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL6281978.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(1961..2335)
                     /gene="rnpA"
                     /locus_tag="PXD88_002455"
     CDS             complement(1961..2335)
                     /gene="rnpA"
                     /locus_tag="PXD88_002455"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL6281979.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            complement(2371..2505)
                     /gene="rpmH"
                     /locus_tag="PXD88_002456"
     CDS             complement(2371..2505)
                     /gene="rpmH"
                     /locus_tag="PXD88_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL6281980.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2742..3704
                     /gene="hemH"
                     /locus_tag="PXD88_002457"
     CDS             2742..3704
                     /gene="hemH"
                     /locus_tag="PXD88_002457"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL6281981.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
BASE COUNT         1144 a          707 c          729 g         1156 t
ORIGIN      
        1 aggataattg acaaacaaga aatcatcaaa ccaataaaag ctcctattaa taaaataatt
       61 acctttttag gtttatcttt tattacagga taatccggcg aagcttggta actaaaagtt
      121 tgtgttttaa ctgtctttgt tttttcaaat aacggctcta gctgtttaag ttggtaatca
      181 atttgataat aacgtggtgg ataaacaaca cctttctcat tagccacatc aatttgagcc
      241 tttaggtatt tttcccctaa cataaataaa tatgaactat ctgctaattt tgaatcagaa
      301 agggagattt tagtatcact taaagctgct gcaatatttg atgcatctga ttgattaaat
      361 gcttttgaat attctttaat acctgctttt tgtgcagttt cataggcttt atttaagttt
      421 tccaactgaa ccgacttatt cacagataaa tcttcctgaa ttaatgattt ttcatattgt
      481 aatgcagtaa gcacattttg gaaatcgact agaaaatctt ctaattcaac agcaaatgct
      541 ttgctattaa tgaattgaac caacttacca agggtgtcct gcgcctccat aggtgtctct
      601 gcagaaaaag atagtgtacg acctattgca ttaggatctt tctttgcatc aggaataata
      661 aagctggtat tttcattact caaattggat aaaactgtgc gttgcccctg ctcatctttt
      721 ccttcagcta acgtcttata cacattggaa gtgataaaaa attcattttt agtatcttga
      781 gattgtgcta atcggttaaa attgttgaac aaactcgcag acaatgcatt tggatcaaca
      841 ggatctacac gcaaaatccg actatattct ctgcgaacat ttaaatactc acctaactct
      901 gttaatttag gggcaataac tgttgcctta gacgtccatt gctcttttgc agtaaatgca
      961 taaataccag caagtaatgt ggtaatgaat gttgttataa caatccacca ttttttatcc
     1021 catagagcac gaaaaatctc aattaaatca atctcatccg agctttgctc atgacttttt
     1081 actgaatctg ccatagtttc ctctaaaatt tgcatgtttc tgtacagcat tatacataat
     1141 tttcttattt ccactgcatt catttactct tttttaagat tgcacttcct atgtaattat
     1201 tagataatat ccaatcacag taaaattttg atctaaaaca aaatgagcga tattcaaatt
     1261 cctttaatct ttactgatgc ggcggctcgt aaagtaaaaa gcttaattga gggcgaagag
     1321 aacccgaatc ttcgcttgcg tgtgtatatt acgggtgggg gctgtagtgg attccagtat
     1381 gggttcacct ttgatgatca agtcaatgag ggagacctta ccattgagaa tcaaagcgtt
     1441 ggcttggtgg ttgacccgat gagcctacaa tatttaattg gtggcacggt ggattatacc
     1501 gaagggctgg acggctcacg ttttgtcgtg aataatccaa atgcaagctc aacctgtggt
     1561 tgtggttctt cctttagcat ttaattcact cgaattattg ccttattcaa tatcagtctc
     1621 acaagtaaat tttttactaa aaatgaccgt ttgtattaaa caaaatagcc taacttattg
     1681 agtttaggct attttttatc attatgtttg cagttgcctt tacaacaaag tgggacagga
     1741 tcttcgcctc cctcactcaa agggttgcaa cgcagaatac gcttaaacgc taaataccca
     1801 cctttaattg ctccgtggat tttaatcgct tcgaccgcat aggtggagca ggttgggtaa
     1861 aatcggcaac gtgggccaat caatgggctg atagcatagc gatagaaata aatcggtagc
     1921 aatagaattt tggctaatag gctgagacga ggtggctgat ttatggattc tgttgtgccg
     1981 gctttttgct caggcgaatg tgtcttgacc atagtttttc caatgtttca aacagcgttg
     2041 cgttgtctaa tttgccaatg ccgccttttg ccacaaatac aaaatcgaaa ttcggcaatt
     2101 cgtgttgctt gaggcgaaaa ctttcacgca ctatccgctt aatgcgatta cggtcgtgag
     2161 cccgttttaa atgttttttg gcaacagtta agcctagacg aggattttct agattattct
     2221 ctctagcaag aagagtcatt tggggtgtgc tggctcgaag tggctcttca aacaccgcct
     2281 taaattgaac gggagctaac aaacgtagct cccgagagaa atttagcttc ttcacactta
     2341 atcagaaagg tgttttggct ggttctgcaa ttatgcagat aaagatttac gacctttagc
     2401 acgacgacgc gctaacactt gacgaccgtt tttagtagcc atacgagcac ggaaaccgtg
     2461 agtacgagca cgttttaata ctgatggttg aaatgtacgt ttcattgctt atctacctaa
     2521 aatttaaaaa gttggcataa aatggtttct gccaaacaag gaccataaaa aagagttgca
     2581 attctacagg caattaaaat aaaaagcaag aaacaatcca agcacaactc gggttgtttg
     2641 caaaattttt gaaaaatacg accgcttgtt ataatcgcag aaatttatat tggtttgtgg
     2701 cataatcgaa aaaatattaa ctattgatga gaaatagaac aatgaatcaa ccccaacaaa
     2761 taggtatttt gctggctaat ttaggtacgc cagatgaacc cacgccaagt gcggtgaagc
     2821 gttatttaaa gcaattttta agcgatcctc gtgtgatcga tctaccaaaa tttaaatggc
     2881 aagcaatcct aaactgcatc attttgccaa gacgttcgcc aaaagtggca aaattatatc
     2941 aatcagtatg gagcgaagaa ggctcaccgt tattggcgat ttctcggcaa caacaacgag
     3001 cggtacaacg ctattttgat gccaaaggca aaaatgtggt ggtggaattg ggaatgtctt
     3061 acggcaatcc aagtattgaa agtgcgaccg ataacctcat caagcagggg gttgagcgga
     3121 ttattgtgct accgctttat ccgcaataca gtagcactac taccgcttcg gtgtttgatg
     3181 cgtttgccaa cggtttaaaa gcacagcgta aaatcgtgcc gtttgatttt attcacagct
     3241 atcataacga tccgctttat attcaagcgt tggctaactc tattgatgtt aaacctgacg
     3301 agttattact gttttcattt cacggcattc ctaaacgtta tgaaacggaa ggtgattttt
     3361 acgccaagca ttgccaagaa acagcagaat tagtggctga aaagctaggt ctgccaagag
     3421 aaaaatggta tttgtctttc cagtcccgtt ttggtgatga agagtggcta cagccttata
     3481 ccgatcaaac ccttgaaagc ttcccacaaa aagggataaa aaaagtggct gtcgtttgcc
     3541 cgggcttttc agcagattgt ttggaaacct tagaagaaat tacagaagaa aaccgcgaga
     3601 actttgaaca tgccggcgga gaatcttatc gctacattcc agcgttaaat gcgagtggcg
     3661 atcatatcaa ggcattagta aaattaatcg aagcgaaaat ataatataat ttgggcggat
     3721 aataaatccg cccatt
//
LOCUS       DANLXK010000175         3726 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.176, whole genome shotgun sequence.
ACCESSION   DANLXK010000175 DANLXK010000000
VERSION     DANLXK010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3726
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..132)
                     /gene="rpmG"
                     /locus_tag="PXD88_002458"
     CDS             complement(<1..132)
                     /gene="rpmG"
                     /locus_tag="PXD88_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL6281982.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     "
     gene            complement(144..380)
                     /gene="rpmB"
                     /locus_tag="PXD88_002459"
     CDS             complement(144..380)
                     /gene="rpmB"
                     /locus_tag="PXD88_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL6281983.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(612..1349)
                     /gene="radC"
                     /locus_tag="PXD88_002460"
     CDS             complement(612..1349)
                     /gene="radC"
                     /locus_tag="PXD88_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL6281984.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            1499..2701
                     /gene="coaBC"
                     /locus_tag="PXD88_002461"
     CDS             1499..2701
                     /gene="coaBC"
                     /locus_tag="PXD88_002461"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL6281985.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            2701..3018
                     /locus_tag="PXD88_002462"
     CDS             2701..3018
                     /locus_tag="PXD88_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6281986.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3015..3197
                     /locus_tag="PXD88_002463"
     CDS             3015..3197
                     /locus_tag="PXD88_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL6281987.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
     gene            3184..>3726
                     /locus_tag="PXD88_002464"
     CDS             3184..>3726
                     /locus_tag="PXD88_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL6281988.1"
                     /translation="MKKYNIVFSADKNYLPYLEIALKSLLAHHNHLSIFILSTGDISH
                     HWIETLRPYLENRYSTLRLGYLDSNNLANFNSNGYITNSTYLRYYIEELFEHSDSPYW
                     IYLDCDLVVNGNITDPFTNLDFSFGSIAAIADPYVNKLKNHPYIYKNYFNAGVFYLNA
                     KHFSKQPFIQLTERFKENLPF"
BASE COUNT         1135 a          756 c          738 g         1097 t
ORIGIN      
        1 cacaactgga tcaaattttt tgatttccat tttttcaggc atattacgtt tgtttttatc
       61 tgttgtgtag aagtgaccag tttctgctgt agaaactaaa cggattttct cacgagcgcc
      121 tttagctgcc attttttagc tccttagatt ttttcgccac gagcacggat ttcagctaat
      181 actgcatcaa tgcctttttt atcaataata cgcatacctt tcgcagttaa acgtaaggtt
      241 acgaaacggt tttcgctctc aacccagaaa cggtgagtgt gaaggtttgg taagaaacga
      301 cgtttagtcg cattcattgc gtgtgagcgg ttgttaccaa ctgctggacg cttgccggtt
      361 acttggcaaa ctcttgacat ttgaatttct ccaataattt taagcttaaa aatggttcgg
      421 gcgatctcac aaaaggcgtt gctcaaccaa cccctccgat tttgattgcc tcgtcaggca
      481 ttaacccgac cacagtctat gtaataaaga ctgccgatta taccgatttc atttgttata
      541 ttcaagtaga atttatatgc gtatctttta ctgtttcagg agaaatgtta aaggttacat
      601 aaagcaagcg gtcattttct atcagaaatt tgcaaaaatg aatgctcctt catctctaat
      661 ttctcttcct cgaacgaaaa atagtcccct ttgccgacaa taatatgatc cacaaagcga
      721 atatcaacca attcgcacgc catttcgatc tttttagtta aacttctgtc cgactcactc
      781 ggcagacaag aacctgaggg gtgattatga gccacaataa tcgccgcggc attatatttt
      841 aacgctcttt taataatttc tcgggggtga acagcagttt gattaatggt gccgaagaac
      901 attttttctt tataaatcaa tcggttttgg ttgtccaaaa acagcaccat aaaaacttcc
      961 cgttcttctt cctccaactc ggtttggaaa tacataatcg ccatataagg ggcttgaatc
     1021 atctcgctaa attccatttg ttgagccaga tagcgtttgg tcatctcttt agaggcttgt
     1081 aactgaatgt atttggtttt gcctaaaccg taaattttgc aaaaatcatc aatatttgca
     1141 ttcagtaatt ggcgtaacga gccaaatgcc atcaacacac tctctgccaa tgccagcaca
     1201 ggcacagctt tcgtaccagt ccgtaaaaat atcgctaata attcggaatc ggttaatgag
     1261 gctgccccct gtgttaataa tttctcacgc ggcatcattg ttggctcttg agaatcttca
     1321 tcaaaaaaat cgttcatttt ttcctccatc aatttagtta agcataaaag agccaacctt
     1381 tgcagacaaa gggatttatt caatttttcg agcaagatcg caaaaatagt gaagttgtga
     1441 gcaactcctt attccgctaa aatatgcaaa ataaatccac gctttaagga tagtaaagat
     1501 gttacaaaac aaaaaaattt tagtcggcat ttccggtggg attgcagcct acaaaaccat
     1561 tgaatttatc cgccacttaa aaaaggcaaa tgcggaagtg cgtgtagtgc taaccccagc
     1621 agcagaagcc tttgtaacgc ctttgacctt acaagcgatt tccggcaatg cggtttccac
     1681 ttcactactc gacccacaag ccgaactggc gatggggcat attgagctgg caaaatgggc
     1741 ggatttaatc gttatcgccc cggcaagtgc cgattttatt gctcgcctgc gtatgggaat
     1801 gggcaacgat ttactttcca ctctctgcct tgcgactgca agcccgattt tgcttgcacc
     1861 ggcaatgaat caacaaatgt acaaacagat tgcggtgcaa gaaaatctgt ctgttttagt
     1921 caatcgtggc gttcagctca tcggcccgaa tagtggcttc caagcctgtg gtgatgtggg
     1981 ggctggcaga atgtctgagc ctgaagaaat ttaccaagcg gtgttggctc atttctccaa
     2041 caatcaagat ttagagggct taaatgtaac cattaccgcc ggaccgactc gtgaggcgat
     2101 tgaccctgtg cgttatatca gcaaccacag ctccggcaaa atgggctacg cgattgctaa
     2161 tgcctttgcc gaacgtggag caaaggttac gttgattagc ggtccggtga atttaccaac
     2221 gccgaaaaat gtggaacgaa ttaatgtgga atctgcggtt gagatggagc aacaagcggt
     2281 caaatttgcc caaaaatctg cgatttttat tggctgtgca gcggttgccg attaccgaat
     2341 ggcggcagtc tctgaccaaa aaattaagaa aaccgatgcc aatgatgaac tcacgctaaa
     2401 attggtaaaa aaccccgata ttatcgctaa cgtcgccaat cttgccgaaa accgcccttt
     2461 tgtggttggt tttgccgcag aaacgcaaaa tgtggcggag tacgctaaat cgaaactcga
     2521 acgcaaaaat ctggatatga tttgtgccaa tgatgtctca ggcggacaag tgttcgggca
     2581 ggatcaaaat gcgttgcatt tgttctggaa aaatggtgaa aaaacgcttc ctctggcgga
     2641 taaaagcaaa ttggcagaaa gtttggtaca ggaaattgta aaacattatc gagaaaaata
     2701 atgaaattac tggttagcca ttttcatcaa ggcgaaggga aatttcctac attctcagct
     2761 ggtactgccg ttcgattagg gagtgaatgt gtaaactacc caaactggtt tgcctgtgaa
     2821 attgacggtt ggaaaacctt tgtgccaagc cattttatta gcgaagataa attgatatgc
     2881 gattataacc caacggaact tgttgcagca caaggcgaga gagtagaatt ccttgaacta
     2941 cattaccaat gggcaattgt caaaagagaa aacgaaattg gctggctacc ttgtgaaatc
     3001 ttaagggtaa taggatgaaa attatgcaac ttacgtcaaa tcagtatatc aacgacatta
     3061 aacatattct tttatctgct cgccaaaagg cgtatcaagc cgtgaattcg gcaatggtcg
     3121 aagcctattg gaaaatcggt gaacgaattg tgcaagaaga gaaaaatatg gtcaaagatc
     3181 aaaatgaaaa agtataatat tgtattttca gcagataaaa actacctgcc atatttagag
     3241 attgccttaa aatcactatt agctcatcat aatcatttat ctatttttat attgagtact
     3301 ggcgatattt ctcaccactg gatagaaaca ttacgcccct atttagaaaa tagatattcc
     3361 acattaagac ttggctattt agattcaaat aatttagcaa attttaactc caacggctat
     3421 attactaatt caacttacct acgatattat attgaagaac tatttgaaca cagcgatagc
     3481 ccatattgga tttatttaga ttgcgatctt gtggttaatg gaaatattac ggatccattt
     3541 acaaacctag atttttcttt tggaagtatt gctgcaattg ctgatcctta tgtaaacaaa
     3601 ctaaaaaatc atccctatat ttacaaaaac tatttcaatg ctggtgtatt ttatctaaat
     3661 gcaaagcatt ttagtaagca accatttata cagcttactg agagatttaa agaaaattta
     3721 ccattt
//
LOCUS       DANLXK010000176         3703 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.177, whole genome shotgun sequence.
ACCESSION   DANLXK010000176 DANLXK010000000
VERSION     DANLXK010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3703
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            141..473
                     /locus_tag="PXD88_002465"
     CDS             141..473
                     /locus_tag="PXD88_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL6281989.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
     gene            538..1629
                     /gene="trmA"
                     /locus_tag="PXD88_002466"
     CDS             538..1629
                     /gene="trmA"
                     /locus_tag="PXD88_002466"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL6281990.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            1721..1810
                     /locus_tag="PXD88_002467"
     tRNA            1721..1810
                     /locus_tag="PXD88_002467"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1755..1757,aa:Ser,seq:tga)
     gene            1966..2337
                     /locus_tag="PXD88_002468"
     CDS             1966..2337
                     /locus_tag="PXD88_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL6281991.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(2334..3245)
                     /gene="xerC"
                     /locus_tag="PXD88_002469"
     CDS             complement(2334..3245)
                     /gene="xerC"
                     /locus_tag="PXD88_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL6281992.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(3312..3602)
                     /locus_tag="PXD88_002470"
     CDS             complement(3312..3602)
                     /locus_tag="PXD88_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL6281993.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
BASE COUNT         1092 a          814 c          726 g         1071 t
ORIGIN      
        1 atatttctcc ttaaagagtt ttttgcaaaa aatttgccaa atttgaccgc ttttttacat
       61 taaggcattg atttattcgc tgtttttgtt taatgtatgc cgattttatt ttccctaatt
      121 tcaaacaacg aggcattatt atggcagaca gtttcagcgt tacgcgccgc ttttttgacg
      181 ataaaaatta tccacgtggt ttctctcgcc acggcgatta caccattcgt gaatcacaaa
      241 ctttagaaca attcggtcaa gcttgcttgg ctttagaaag tggtgaacgt aagccggcaa
      301 ctcaagaaga aaaacgtttc gttgcggtaa tgaaaggcga agaggtagca gaaactgaca
      361 ttgaaaaagc gtggttaaaa taccgcacat taactagtaa aacaaaacgc atctacaccc
      421 tttcaggcaa tgcaggtagc gatgccggcg atgacttcag tgctgctgaa taatttctaa
      481 tttaaaacca cgaagtaatt cgtggtttgt tttttcattt gctatttgtg gtaaaaaatg
      541 actcttccta tcgaacaata ttccgatctt cttgcaaaaa aaaccgaaaa tttgaccgct
      601 ttactcaagc cgtttaaccc gcctgcgatt gaggtatttg cctcaaagcc aagccatttc
      661 cgtatgcggg cagaatttcg agtgtggcac gaggaaggcg agctgtacca cattatgttc
      721 aaccctgaaa ccaaagctcg ttatcgtgtg gatagcttcc ctattgccag tgagctgatt
      781 aaccatatga tgaccgcatt attggcggaa attaaaggca atgaactact gactcgcaag
      841 ctgttccaga tcgattattt aagcacctta agcggtgaaa ttgcagtctc aatgctttac
      901 cacaaaagcc tgaatgaaga atgggttgaa caggcaaacg ccttaaaaag ccgtttagag
      961 caacaaggtt tcaaagtgca aattatcggg cgtgccaata aacaaaaaat cgcactggat
     1021 tgcgattatg tggaagaaat tctaccggta cacggcaaaa attatgtgta tcgccaagtg
     1081 gaaaacagct ttacccagcc gaatgcggaa atgaatatta aaatgctgga atgggcgaga
     1141 aattgcacaa aaaatagtga aggcgatttg cttgagcttt actgcggcaa cggcaatttt
     1201 tcgattgcct tggcggaaaa cttccgcaaa gtgctggcaa ccgagatctc aaaatcttca
     1261 gtgcaatcgg ctcaatacaa tattgaaaaa aatggcattg ttaacctaca aattatccga
     1321 atgtcggcag aagaatttac ccaagcgatg aacggtgtgc gagcctttta tcgcttaaaa
     1381 gggattgatt taaacgccta cgaatgcaat accatttttg ttgatccacc tcgtgcaggg
     1441 ttagatcaag ctacattaaa tatggtgcaa gcgtatgagc ggattctcta tatctcttgc
     1501 aatccggaaa cccttgccga gaatttacaa caattaagcc aaacccatcg gattgaaaaa
     1561 gccgctcttt ttgaccaatt cccttacacc caccatattg aaagtggcgt ttggttaatt
     1621 agaaaataaa ttgtgctgaa aaaaagaacg aataagcagc ttttaagatt tattacttga
     1681 cgatgttcgc aataatctct attattgcaa cgttttcaac ggaggaatgg cagagcggtt
     1741 gaatgcaccg gtcttgaaaa ccggcgaggg ttaacgccct ccgtgagttc gaatctcact
     1801 tcctccgcca gtctttaaac ctgttgagca atcagcaggt ttttttattt catttgcaag
     1861 aaaatcagat aaaaccaccg cttgaatcca tcgctataaa ctggttgaaa tcagcctaaa
     1921 gttgctttag gataattgcg attcattatc aataacttaa ttattatgaa atacctttat
     1981 attatctgtg gttttatttg tattggttta ggcatcatcg gggcagtatt accgggcttg
     2041 ccgaccacac cgttcttact tttggctctg ttctgcttta ctaaaggctc ggagagaatc
     2101 cgccagtggt ttattcaaac caaattatac aaaaaatatc tgcaagaata tgatgagaaa
     2161 cgggcaatga cgatgaagca aaaaatcacg attttagcga tttcgtttcc gtttacacta
     2221 tttgctttct ttgcactgcc ccatatcggt gggaaaattg cgttagtagt gttagtgata
     2281 attcaatatt ggtatttctt ctgcaaaatg aaaacccttg aaccggagaa tgcctaatct
     2341 tcctgcttcc gccttgctct tgggtgggca gagtcataaa ttttagctaa gtgttggaaa
     2401 tccagatgcg tataaatttg agtggtggac aggctactat gacccaataa ttcctgaacc
     2461 gctcgcaaat caccgcttgc ctctaacata tgagtcgcaa aagagtgacg taatttatgt
     2521 ggatgcagat ggctttccag cccttgtcgc tcaccccatt tcttcattgc caactgaatg
     2581 gaacgatgag ataaccgccc acctcgctta ttcagaaaca ccgcattatc ttgcggctta
     2641 aattgcaaac gcatttctaa ccagcgattt aacgctttta acgcttgcga gccaatcggc
     2701 acaattcgct ctttgctacc cttaccttgc acccgtactt ctcgtgccga taaatccata
     2761 tcgcctaaat ccagcccttg taattccgat aaacgcaagc cggaactata catcagctcc
     2821 atcatcgcaa tatctcgaat atcgctcggc tcatcactct caatcgccag caactgcccg
     2881 acctgctccg catcaatatt tttcggcaaa tgcttaccta ctttcggcga tttcacccct
     2941 aaagtcgggt ttgccgacat tcgcccgatt ttaatcaaat agacaaacca ttgccgtaac
     3001 gccaccaagc gtaagccgat acttttcgca ctcaaccctt gcttatggct ttggcttaac
     3061 atccaacgca ccgagctact ttcgacctct tcccaatttt caatgcctgc ttgcgaaaaa
     3121 agctcgctca ccgccattaa ttggcgttga taattgctta aggtatgcgg gctaacttgc
     3181 ttttcaatgc gtaagaaatc ccaatagggg cgggtttgtt ggaaaagagg gttggaagtg
     3241 gtcataaacg taataacaag cggttaattt ttaggaaaat gttgcaaggg caaaagattt
     3301 gccctttgag attaggctag ccccaactga ccgatacgca cgccaacatt accaagtgca
     3361 acagggctta aatattcgcc gagaaattca aacaattcat tcacatcagt aaaactgcga
     3421 tgagttttca cttcttgctc cactttacga gtaaattcat aatgtacatt ttcgccgtta
     3481 ataaaggctt ccagcgttaa atatacggtt tcaaaatagt ggcttggcga gccttcaaag
     3541 cccggatcac tcactcgaac attccaatga ttactaaata aaacttcggt ttttactgac
     3601 attgtgtttt ccttcttcct ataagtacgt acattatttt aatcaagata gattgaattt
     3661 gccacttttc ctagtcagaa tcgaggcaaa tcttatttgg ttt
//
LOCUS       DANLXK010000177         3684 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.178, whole genome shotgun sequence.
ACCESSION   DANLXK010000177 DANLXK010000000
VERSION     DANLXK010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            15..1199
                     /locus_tag="PXD88_002471"
     CDS             15..1199
                     /locus_tag="PXD88_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL6281994.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
     gene            1210..1962
                     /locus_tag="PXD88_002472"
     CDS             1210..1962
                     /locus_tag="PXD88_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL6281995.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            1983..2435
                     /locus_tag="PXD88_002473"
     CDS             1983..2435
                     /locus_tag="PXD88_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL6281996.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            2539..3633
                     /locus_tag="PXD88_002474"
     CDS             2539..3633
                     /locus_tag="PXD88_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6281997.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
BASE COUNT         1107 a          728 c          847 g         1002 t
ORIGIN      
        1 ataaaggaag aactatgtct agaccactta attttgtgat gatttccccg cacttcccaa
       61 cgaactttga aacctttgcc attcgtttgc gtgaagccgg ttttaataca ttgggaattg
      121 cagatgcccc ttatgaatca ttgagcgaaa atctgcgtca ttccctgact gaatattatc
      181 gtgtagataa tatggaagat tacgaacaag tttatcgtgc ggtcgcgtac tttgcccata
      241 aatacgggcg aattgaccgc attgaatcgc acaatgaata ttggctggag ttagatgcga
      301 aattgcgtac cgatttcaat gtgtttggtt ataagagcga tgatatgctc tcaattaaaa
      361 ccaaagccca aatgaaagag gtattccgca aaaccggctt gaaagtggca caagggcgag
      421 tatttaaaga tgatgaagat gcccgcaaat tagcaaaaca gcttaaattc ccggtgatta
      481 tcaagccaaa ttcaggggtt ggggcaagcg atacttacaa aatcaaaact gcggaagagt
      541 tagaagcttt cttcggttat aaaacgccaa cggttgaata tattatggaa gagtttattg
      601 acggcgatat tattaccttt gacggtttaa ccgataaaga gggcaatatc gttttctact
      661 ccagccttga atattcagaa gcggtattag ataccgtttc aaaagatggc gatatgttct
      721 actatgtccc atgtgaaatt tcgccaaaat tagtggaaat gggcaaacaa tgtgtgaaag
      781 cctttaacgt aaaagagcgt tttttccatt ttgagttctt ccgtgttaaa gggagcaaaa
      841 aagaagagtt gttaccactc gaaatcaact gccgtccgcc gggtggctta actattgata
      901 tgtggaacta cgccaacgat ttcgatgtgt tccgtgaatt tgccaatatt gtgaaagaaa
      961 acaaattcta tgccgatatt cagcaccctt ggaacgtggt ttatatttcc cgcaaggcaa
     1021 accaaaatta tgtgaattcg attgaagctg tttgtgagaa atttgccggc aatattatca
     1081 gcgtgcaaag cgtaccgggc gtatttgcca aagtgatggg cgaacaaggc attttagccc
     1141 gtaccgaaac aatggagcaa atgcgtgaaa ttgcacaatt tgcacaagct aaacagtaag
     1201 aggtgaagta tgcattttga aaaaagaagc cactggagtg gagaattagg tcgtgaaatg
     1261 tcgttcaacg tttacggaca cgcaggtaaa ccggttattg ttttcccttc ctccggcggc
     1321 aatgaaaacg agtatggtaa ttttggaatg attgaggctt gccgttcctt tattgaacgt
     1381 ggcttaatca aattttacac gcctgattct tacgatgcgg aatcttggtt atctaaacat
     1441 aaatccggac acgatatggc attagctcat aatgcttacg accgttatat tattcacgag
     1501 ctagtgccgt taatccgcca tgaatcgcac tggaacggca cgatgattgc caccggttgt
     1561 agtatggggg ctttccatac ggtaaacttt gccttacgtc atccggatct gtttgatatt
     1621 gccatcgcct taagcggtgt ttatgacgct cgctttttca gtggtgagtt ttatggcgat
     1681 aaagcggttt attttaactc gccgattgat tatgtatggg gtcaaaatga cgattggttc
     1741 ttagaccgct accgccaaaa tcactatgtg attgcagtcg gacaaggtgc gtgggaagaa
     1801 cagcatattg aagacacccg ccgattacaa gaggctttta acgcaaaagg gatcgatgct
     1861 tggtttgact actggggctt tgatattgac catgactggc cgacttggcg taaacagatg
     1921 ccttatttct taggcaagtt ggaagaacaa gggattattt aatctatttg aggagaaaag
     1981 aaatgaactt aaaagcagtc gcagtttctg cattagcaat gagcagcgtg gcaatggcag
     2041 atattgccga tgtcaaaccg gtggtatttg aaagtaaatt tgatttccaa actacagtca
     2101 caactttaac caacacctta aaagaaaaag gaatgacgat ttttgccgaa atcgatcacc
     2161 aagcggcggc aaaacaagcc ggcttagaaa tgcaaccggc aaccgtattg gtttacggca
     2221 caccgaaagc cggtacgcca ttaatggtga aagatccgat gttagcgttg caattaccgt
     2281 taaaagtgtt aattaccgaa ccgaacaagg gcaaggtcga agtaatgtta aatcgtgccg
     2341 atcaagtggt ggctcacgct aataccgatt atgctgatgt agaaaacaac cttgccaaag
     2401 cggaaaaatt aattaaagcg actgtggcaa aataacttca cgctatgatc tattctcagg
     2461 aagtggaagc gtagataatt tgcaaatccc tcgaaagagg gatttttcat agtattggga
     2521 atgagtagga atcatataat gaaactcaac caagcgattg ccgaccgcat cgtcaagcgc
     2581 acgatgcaga ttattcccaa ctccgtcaat gtgatggata gtgaaggggt gattattgct
     2641 tccggcgatg tcggtcgtat cgggcaacga cacacaggag cggtgattgc gttacgcaac
     2701 gatcaagcgg tcgaaattga tgaaaatctt gcaaaacagt ggtgcgatga agtgaaagcg
     2761 ggcattaact taccgcttca ctatttaggc tcaaccattg gtgtagtggg gatttcaggg
     2821 cagccacaac aagttcggca atatgctcaa ttggtgaaaa tggcggcgga gctgattatg
     2881 cagcaagcgt ttgagttgga acaggaacgt tggcaacgcc gctatcggga agagtttgtg
     2941 cgggccttgc tcaaaggtag cctaagcaca gcagaaatcc agcaacaagc ggtctttttc
     3001 gggcaagatt ttgcaaaacc gctgtcggtg atggtgatta aaattcacgg ctctactgcg
     3061 gaaaaactcc aacgcctgat tgattttttc gaacattatt tcccgagcct actcaccgcc
     3121 gtgattgggt tagataaaat tgccttgctg aatcatttat ccaacgaaaa atcgttaatc
     3181 cgcaatgcac taaacaaact taacgatccg gatatttcct tcaaaacggt ggttgggctg
     3241 gcggtcgaaa atttatcgca aacccatatt tcctaccaaa ccgcctgcca taccctcaat
     3301 tatgccgagc agatccaaag ccgtaagcag attattcatt ttgaagattt taaactgccg
     3361 gccctcttgc acagtttcag ccactcttgg gaagcgaaaa ccttgctctc gccgttccaa
     3421 gctttactgg tttccgataa aaaacaggtg ttactgaaaa gtctgcgtta ctattttttc
     3481 gcaaattgtg atctggatca cgctgccaaa aaattgttta ttcacccaaa tacgctacgt
     3541 taccgtttag agaagattga gcagataact ggtttatctt tcaataacat agagcaaaaa
     3601 tttgtgctgt atcttggagc ggttctgtcg taaaaattgt aaaaatatac aaacaagcgg
     3661 tcgtttttaa caaatttttt gcaa
//
LOCUS       DANLXK010000178         3587 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.179, whole genome shotgun sequence.
ACCESSION   DANLXK010000178 DANLXK010000000
VERSION     DANLXK010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3587
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            41..2017
                     /gene="cpdB"
                     /locus_tag="PXD88_002475"
     CDS             41..2017
                     /gene="cpdB"
                     /locus_tag="PXD88_002475"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL6281998.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(2090..3568)
                     /locus_tag="PXD88_002476"
     CDS             complement(2090..3568)
                     /locus_tag="PXD88_002476"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL6281999.1"
                     /translation="MDSILGKKINSTAIPSLLCDFYKTSHRIQYPEGSQFLYSTFTPR
                     SNIYAPFVTRVVSFGFQAFILKYLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSG
                     EHIAQLHQLGYLPIRIKAIPEGKSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQ
                     PITSASIAFAYRKALAEFSEQTCDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSF
                     LGTDTIPAISFVTAYYGSQHLIGTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLS
                     IVADTTDFWHNITVNLPLLKQEILARPESAKLVIRPDSGDFFTIICGNNSSPVEHERK
                     GLIECLWDIFGGSINQKGYKVLNPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVF
                     GVGAQTYQRNTRDTLGFAIKATSITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDH
                     YVDELTALDDFSDDLLEVVFENGKLVKSTNFDEIRQNIAQQF"
BASE COUNT         1195 a          674 c          717 g         1001 t
ORIGIN      
        1 ttttacaatt taccctttca tttcattaag gagatatttt atgttaaata gaagaaaatt
       61 tatccagctt ggtgcaactg caatgcttgt attggggaca caaccgtctg catttgcaca
      121 aacagccaaa aataaagctg gcttgcgtgt catcgccact acggatattc acggtttctt
      181 aactgatttt gattattaca aagatgctcc aacagaaaag tttggtttta cccgtacggc
      241 aagcctaatt aaacaagcta gagcagaagt taaaaacagt gtgttagtcg ataatggtga
      301 cttaattcaa ggtaatccta tttctgacta ccagtcaacc aaaggtgcaa aagagggcaa
      361 acctgaacct tcgattatgg cattaaatgc gatgcaatat gaagtcggaa cgctgggaaa
      421 tcatgaattt aactacggtt taagctattt agataatgct attaagcaag caaaattccc
      481 tattgtcaat gcaaacattg tgaagccggg gacagatgaa ccattcttta caccttatgt
      541 tattcaacaa aaagaaattg tagatgaaaa agggaataag cataccatta agattggtta
      601 tatcggtttt gtaccaccac aagtgatgat ttgggataaa gctaatcttg aaggaaaagt
      661 tgaagctcga gatattgtga agaccgcaca aaaatatgtg cctatagtaa aaaaagaagg
      721 ggcagatatt gtcgttgcat tggcacatac cggcccttca gacgaaccct ataaagaagg
      781 cgctgagaac tgtgcgtttt atctagctga tgtaaaaggt attgatgcag ttattttcgg
      841 gcattcacat cgcctgttcc caaataaaga atttgcaaat tcaccaaatg ccgatattgc
      901 aaaaggaaca atgaaaggcg taccggaaag tatggctggc tactggggaa ataacatcag
      961 tgtgattgat ttaagcttgg ccgaaaacga tggtaaatgg ggcgttgtgg acggtagagc
     1021 agagttgcgt ccaatttata atacggaaga gaaaaaagca accgttgaga accaccctga
     1081 aatcgttgca ttattaaaag aaacccatga agcaacccgt caatttgtgt ctcaacctat
     1141 cggtaaagca actgataata tgtatagtta ccttgcgtta gttcaagatg accctaccat
     1201 tcaaattgtg aaccaagctc aaaaagcgta tgtagaaaat gtggtaaaag gcttgccgga
     1261 gcttgcagga ttaccaattc taagtgccgg agcaccgttt aaagccggtg gacgtaaaaa
     1321 tgacccgaca ggctataccg aagtcgataa aggcgaatta actttccgca atgcggcaga
     1381 cttatacctt tacccaaata ccttagtggt ggttaaagca acaggagcag aattaaaaga
     1441 gtggttagag tgcagtgcag gaatgttcaa acaaattgat gtcgcttcgg ataaaccgca
     1501 atatttactg gattggacag gtttccgcac ctataactac gatgtaattg acggtgtcag
     1561 ctatcaattt gatataaccc aaccggctcg ttatgacggc gagtgcaaat tgatcaaccc
     1621 taattcgcac cgtgtggtga acttaacctt tgacggcaaa ccggttgatc ctaaacaaga
     1681 attcttaatt gccaccaaca attaccgtgc ttatggagca aaattcccgg gaacaggcga
     1741 taaacatatt gtgttcgccg caccggacga aaaccgccaa gtgttagcga attatattac
     1801 caccgaaagt aaagctcacg ggcaggtaag tccgaaagcg gataacaact ggcgtattgc
     1861 accaattagc tcaaatgcaa aattggatat tcgttttgaa acctctccaa cagataaagc
     1921 taaagctttc attaaggaaa atgcacaata tccgatggag tatatcgaaa acgatgaaac
     1981 cggcttcgca gtttaccgta ttgatttaac caaataatca gagctaaata caagcggtct
     2041 aatttgcaaa aaaattaaca aatttgaccg cttgtttcat tccatttttc taaaattgtt
     2101 gtgctatatt ttgccgaatt tcatcaaaat tggtcgattt gaccaactta ccattttcaa
     2161 aaaccacctc taaaagatca tctgaaaaat catccagtgc ggttagctcg tcaacataat
     2221 gatcataaga gattactttt actcgccctt tttgcgattt ttttaagccg ttatcggttt
     2281 taggagcttt gaaaattgcc ttttcgacac cgttaattgt aattgaagtc gctttgattg
     2341 caaaacccag cgtatcacga gtattgcgtt gataagtttg agccccaacg ccaaacacaa
     2401 tattgctgga agcaaaacct tttgccgtta agccctctaa aatccgtatc attttatcat
     2461 aagtgacgcc gtcaccataa attgccccaa tatgcggatt aagcacttta taaccttttt
     2521 ggttaatact accaccaaaa atatcccaca aacactcaat cagacctttg cgttcgtgtt
     2581 caacggggga ggaattgtta ccgcaaataa ttgtaaaaaa atcaccgcta tcagggcgga
     2641 taaccaattt tgctgattcc ggtcgagcta aaatttcttg ttttaataat ggcaaattaa
     2701 cggtgatgtt atgccagaaa tcggttgtat ctgccacaat agatagcata ttatttggat
     2761 attttgccat taaataacgg aaagtcggca gctcatcaac accgtgtgaa ctcatcaccg
     2821 aatgttctga tgccggaata gatgtaccga ttaaatgttg agaaccataa taggctgtca
     2881 cgaatgaaat tgcaggaatg gtatctgtgc ctaaaaatga ggttagatgt ccggcaccgg
     2941 agctttctgc tgattctaag gaactcattc cacgcataga gaaatcgtgt gcctggaagg
     3001 gtagatggct attatcatca caggtttgct ctgaaaattc ggctagagcc ttacgataag
     3061 caaatgcaat ggaagctgat gtaataggct gccataatga cacattaatc agggtttcca
     3121 aataattagt cagccaaaaa aagcttgagt gagtgttttc aattgtcatt aaaggaactt
     3181 tcactgcaac agattttcct tctggaatag ctttaattct gataggtaag taaccgagct
     3241 gatgcaattg tgcaatatgt tcgccagagt cctcaatatt caatgtgtca gaaataaatt
     3301 gagtatattc agaaacaacg tcatgttgtg agcgagaaaa aaaattatcg ttaaaataat
     3361 gaatcaagta ttttaaaata aatgcctgaa agccaaatga tacaacacgt gtaacaaatg
     3421 gagcataaat attactacga ggtgtgaatg tactatataa aaactgagaa ccttcaggat
     3481 attgaattcg atgtgaagtt ttataaaaat cacataatag tgatggtatt gcagttgaat
     3541 taattttttt acccaaaata ctatccattt tcttaaagtc cttattt
//
LOCUS       DANLXK010000179         3540 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.180, whole genome shotgun sequence.
ACCESSION   DANLXK010000179 DANLXK010000000
VERSION     DANLXK010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3540
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            123..911
                     /locus_tag="PXD88_002477"
     CDS             123..911
                     /locus_tag="PXD88_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282000.1"
                     /translation="MFLSHFKQVLNANIEADGKDWTIIDVFGGSGLLAHTAKREKPLA
                     RVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRISNEIKAKIINKINDFEG
                     FKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEATGYLDDIEVVSESFHQL
                     LPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLIDLTKPPYIFFSSTKSEF
                     IRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMVYKF"
     gene            complement(948..3386)
                     /locus_tag="PXD88_002478"
     CDS             complement(948..3386)
                     /locus_tag="PXD88_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL6282001.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
BASE COUNT         1071 a          660 c          694 g         1115 t
ORIGIN      
        1 agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcaag caagcaagca
       61 agcattgtga gatagagaaa gtatttaaac aagctccttt acccttttca gggcaaaaac
      121 ggatgttttt atcccatttc aaacaggtgt taaatgcaaa tattgaagca gacgggaaag
      181 attggactat tatagatgtt tttggtggga gtgggttgct tgcacatacc gcaaagcgtg
      241 agaaaccgtt agcaagagtg atttataatg attttgataa ttacgccgaa cggctaaacc
      301 atatcaaaga gacaaatcaa cttcgccaag aaatctacca aattgttgat gaaattatac
      361 caaaaaataa gagaattagc aatgaaatta aagctaaaat catcaataaa atcaatgatt
      421 ttgaggggtt taaagacctc aaatgcttaa gttcttggtt attgtttagc ggtgagcaag
      481 ttgcaacttt agatgagtta tttaagcacg atttttggca ctgtgtgcgg caaagtgact
      541 atcctgaagc aacgggttat cttgatgata ttgaggtggt tagtgagtcc tttcatcaat
      601 tattgccgag atttcacgac aaagagaaag tattattgat tcttgaccca ccttatcttt
      661 gcacaagaca ggaaagctat aagcaggaaa attactttga tttaattgat ttcttacggt
      721 tgatagacct tactaaacca ccttatatct tctttagctc aaccaaaagc gagtttattc
      781 gctttattca ctatatggtt caaaacagaa aagaaaactg gcaagcgttt gagggagcgg
      841 aaagaatagt ggttaatgcc tcggcaagtt ataacggcaa atatgaggat aatatggtgt
      901 ataagttcta aaaatttaaa cgccctttga tagtgattta aagggcgtta aaaaaccatt
      961 aaaattaaga aagtaaagct cctgttttct ttcgtagttt tcgtggttgc gtttcgcagt
     1021 tttgttggct cgctacaatt actgttcatt gtaatgttta atcgaccatt ggttttgcta
     1081 ggatcagttt caccaaaata accgttaaaa ccttggacgg tgccttctgc tgctttgatt
     1141 ttttcagcaa gtatttgttg ctttgcagca ctttcatctg ttaccttgag tacttcaaag
     1201 tattcgtttt cacgaatgag accagtagca aagtctaaat cgatgaaaac tttacgcgca
     1261 ttaaaaatag ctgtgatctc tgcaacgctt aaaggttttt tcaaacggat aaaattagtt
     1321 ggcaagtgtg gaaaacgttg atatgtgaaa atatctttgt ccaaatgacg agaaacctga
     1381 tctggactag taattgcttg aactttcact tggtcaattg ttggactaac tatgccggtt
     1441 agtgtaatgt ttgctgtttg ggctgtatta tgattgacaa ccatcgctcc ttcatcgcta
     1501 ttctgaatac ggcggaacgt gagatcattg ccgttgacat ctaagcgccc accacgataa
     1561 ccaaaataga tattgttagg atccatttga tctgatgaat tgaggattac ggtaggtctg
     1621 ccactcacaa tacctagctc tgaaaatgca gattttttgt tattttcatc cgcttgttga
     1681 tttaatataa cagtgccgtc accaacgcta acggagcctt tgttttctcc tttgccgttg
     1741 atagttagtg tcccttgtcc gatttttgat aatctgtcac cagcagggtt actgattttc
     1801 cagatcacat ttttatcttt atcaatatca acaccggctc ctaaccaagt aatgcctgct
     1861 ttcatacctt ccacagtggt attaccatga aaatggattg ctcctgcacc ttggttgata
     1921 ttctctgtga gacttagcgt attgttttca cccaaaatat ggaatgtttt accgtgttgg
     1981 agttgaggat tccaagggtt atcgcctgta ttaccattat gaccttgaag tgttggtaat
     2041 gaagtatctg ctaaattaac tgtaagagga gcattccctc ctacgattga gctggtattg
     2101 ccagaaggtg tccaagtgag tctagcacca tttgcattaa tagcgcctgc attattttct
     2161 ttttctaaag cacgtacata atgtgggtgg tgatagttcc agtaagattt ataaacatct
     2221 cccccaagcg tattattctc tgagaaatag tcactatata cacctaacac aacccatttt
     2281 ttggtacgaa catcataacc aaaaagagcg gagccactat cgccaggtaa accgagagtt
     2341 gttaagggac cgtagccgtg gtctttaaat acatcgttta tggtattatt ttcagttttt
     2401 gctactaaaa tacggctgtt aaaatcgctg cctggaacgc ttggatcgcc attagtaaca
     2461 ggcagaacgc tacctcctgt caaaaaagga ccgttaccga cttcaatacg cccgttgttt
     2521 aagcgatctc tttcgttgtt aaccactgct tgtctaccag aaccggcacg aataaacatg
     2581 gggaaaataa aagggtcgct aaatacacta taaaaatctt gtacattttc ggtagtgcgt
     2641 tcaatctcat tagctggagc gacttcagtt actaatttcg ataacctagg tgcgtggtag
     2701 tcccagcggg gcgttgggtt acctgaacca tctaaaatca gtttttctcc ttcgtcatta
     2761 cgttcacgtt tttctatgcc tttcccgaga tctgttcttt ctttatttgg atcaggcata
     2821 tagttattac ggcgcaccac actataattg taatgatggt cgtcggcttt ttcgctagat
     2881 gaatcaccaa attgaatgtc ccgatagcct tggttgtggt ttacactaat aacgtattgt
     2941 ggattaacta atgttgcaat ccctgtttga cgagtaatgg aagagaagtc aatcattgga
     3001 atagacatag tctcacctgt tactgtttca aaaacaggta gatcattaga gtcttcatca
     3061 cctccaccat agagaaattc ataacaaccg ggtaaacttt cattatcaaa gcattcagat
     3121 aggcttacat tcggcttagg tgaaatattt gattccactt caacctgctt agttggtgta
     3181 acctgtaaaa aagtaccgat gtttttgccc gttttatcaa taactggaat attggttgcc
     3241 ccaacaaaaa atttgccttt attttctgct aaatcacgaa aatattgata atcgacatca
     3301 ccacgtacaa tagatgccag taatgttggt gaaagagaaa tagcaattga tgttgctaga
     3361 agagagagct tgaaagtatg cttcattatt atttgaaacc tgtataaata tgtaagtaga
     3421 tcagatttga gcgctattaa aaagattatt taaatcgatt aaatattcat ttaaatacca
     3481 cacaattatt cagcgcgatt atcttgttcg gcataaatct gctcaatacc caaataaggt
//
LOCUS       DANLXK010000180         3517 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.181, whole genome shotgun sequence.
ACCESSION   DANLXK010000180 DANLXK010000000
VERSION     DANLXK010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            9..653
                     /gene="sspA"
                     /locus_tag="PXD88_002479"
     CDS             9..653
                     /gene="sspA"
                     /locus_tag="PXD88_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL6282002.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            653..1060
                     /locus_tag="PXD88_002480"
     CDS             653..1060
                     /locus_tag="PXD88_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL6282003.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            1257..2216
                     /locus_tag="PXD88_002481"
     CDS             1257..2216
                     /locus_tag="PXD88_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6282004.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            2296..2556
                     /locus_tag="PXD88_002482"
     CDS             2296..2556
                     /locus_tag="PXD88_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL6282005.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(2606..3496)
                     /locus_tag="PXD88_002483"
     CDS             complement(2606..3496)
                     /locus_tag="PXD88_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL6282006.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
BASE COUNT         1063 a          587 c          746 g         1121 t
ORIGIN      
        1 agatataaat gacgagtagt ataaacaaac gttcggtaat gactcttttt tcggataaaa
       61 atgatattta cagccaccaa gtgcgtattg tgttagcaga aaaaggggtg ccttatgaaa
      121 tagagaacgt tatgctaggc agtatttctg aagatttatt agaattgaat ccttacggta
      181 atattcctac attggttgat cgtgaattag tgctgtttaa ccctcgtatt attatggaat
      241 atttagatga gcgtttccct cacccaccat taatgccggt ttaccctgtt tctcgtggtc
      301 agtgccgttt aaatatgtat cgtattgaac aagattggta ttcgcaaatt gatattgtga
      361 ataaagatcc tgaatcagcg gaaggcaaga aagcgttagc acagcttaaa gaagatgtat
      421 tggcattagc gcctattttt gccgctaaac cttattttat gagcgatgat ttcagcttgg
      481 ttgattgcta tattgcaccg ttattatggc gtatgcaaat cttaggcgtt aaattcagcg
      541 gtgcaacggc aaaaccaatt aatgcgtata tgacccgtgt attccaacgt gatagtttta
      601 tccagtctgt tggcggcgaa gcgccaaaac atttaatgga cgataaagac taatgaaacc
      661 attaagacct tatctttata atgcctacta taactggatt attgatagcg ataacacgcc
      721 ttacttatta gtgaatgcag aatttccaga cgtagatgtg ccggtagagt ttgtcaaaga
      781 agggaagatt attttaaata tttcgcctcg ttccatcggg cagtatattg tggctgatga
      841 atacattagc tttagcgctc gttttcaggg aatgttaaga gatatttata ttccttttgg
      901 ggcaatggtg gcgatttatg cgcaagaaac cggtgatggt attatgttcc aagaagaagc
      961 ctactacact gaagaggctt atcaagctcg agttagagca gtagagcagc ctaaaaaaat
     1021 caaggcgaag aaaacatcta ccttaaagtt ggtgaaataa gagatctatt tcatcaaaac
     1081 acattacaag cggttaaatt tttctgatta tttgcaaata tcagtcaaaa tttaaccgct
     1141 tgtttgtttt gtgacggaaa taatcaaatt ccacttgcac tccgactaaa aattgcttat
     1201 ctttgttttg tgtttgtact gttgtgatag tacagtaatg atcttaagga gagaaaatga
     1261 aattccataa aaccttatta gtgactttgt taagttcact ttctgtagcg gcattagctc
     1321 aagataaaat tcaaaatgta gcaattacag cgattgtgga acaccctgca ttagattcaa
     1381 ttcgtaaagg tgtgattgaa gaattagccc gagaagggtt tgttgatggt aaaaacatta
     1441 aaatcgacta tcagtctgca cagggtagta ctgcaacagc agcacaaatt gcgcgtaaat
     1501 ttgttgggga taaagcagat attattatcc cgatcaccac accttcggca caacctgttg
     1561 ttgctgcaac acgttctatc ccaattgtgt tttcaggcgt gacagacccg gttgctgcaa
     1621 aattagtaaa atcgtgggag ccaagtggca ctaacgtgac ggggatttca gaccacaaag
     1681 cgatggctcc acaagtgaaa ttaattcaaa cattagtacc ggatttgaaa gctgttggtt
     1741 atgtgtatag tgcaggtgaa gttaattctg cgattgtgtt agaagagtta aaacaagagg
     1801 ctcaaaaaca gggctttact atagtgccgg ttgctgttca acgcagtgcc gatattggca
     1861 ctgctgctcg cagcctaaac ggaaaagtgc aggctattta tatttctgaa gataatgcag
     1921 ttgtttcggc ttatgaagcc ttacataaag cggctttaga agcaaaaatt ccggtgattg
     1981 ctgctgaccg tgatacagta caacgtggtg cagtggcagc ttatgcggtt aatcaatatg
     2041 atattggtgt ggcaaccggt aaagttgctg ctcgtgtatt aaaaggggaa aaagcaggta
     2101 caattccaat ccaagaagtc agcaaattag agctttcaat taatactaaa acggcaaaag
     2161 aattgggcat tactatacca gaggtattaa tcaaagaagc taaacaaact ttttagtgta
     2221 aaaaataaaa atttgtttta tttgtcataa tcttgtagag taaaaattca tttcaactca
     2281 gctaaggaga atattatggg atggattgct gcaattattg ttggcgctat aattggttgg
     2341 atagcttcgg ctgtaatgaa aagtgaaggc ggactttgca aaaatattat tattggtatt
     2401 ttgggttcgt cacttggacg ctgggtattt ggtgatgtat taggtattgg ttccgcttat
     2461 agtgccggag actttaatat agtcggtatc ttttttggtg tattaggggc agctcttttg
     2521 attttcattt tgagaaaatt aagcataatt aactaatttc gtatttcaga aaggaagcag
     2581 ttgttttata actgcttctt ttttgttaaa tatactcttt ttgctcttgc atcagttgtg
     2641 tgaaaaaatc aattaggatt cgcactttag gagagagata acgacggttt ggatagagta
     2701 agctgatttg taaaggttcc tgtgtcaaaa aaggcataat aggaatcaac tctccgtttt
     2761 ttagctcgtg ttttattaaa aactttggaa tgttaatgat gcccaaacca gcttttgcca
     2821 tttgtactaa cgcataacca ttgttactgt aaattttacc ttgtggttta atttgcattt
     2881 tttgtccttg ttgagaaaat tgccattgag gatggtattc atagagtagg cagtctcgtt
     2941 ccactaatgc ttctaagcct ttaggttcgc caaatcgagc taaataatct ggagaagcaa
     3001 ctaaaaccaa atgggaatct gcaatttttt tcgctacaat ggaactatct gcaaggctac
     3061 caatacgcag caccaaatca aagccttctg caatcacatc tacccgacgg tcactaaatt
     3121 caatatgaag ggctaaatta gggtaatctt ccataaattt cccaaggtaa ggggcaatga
     3181 agcgagagcc aaaatccatt ggtacagaca ttgttatttt cccttgtagc gttgagttaa
     3241 tattacttac gctggcatcg gcctctttta gttcatttaa aataggcaag cattgctgat
     3301 agtagagcaa ccctgcctca gttggcgtaa tttttcgagt ggttcgttgt agtaaacgca
     3361 cattgagatg ttcttctaac tgagccacca atttacttgc catgggtaac gaaatttgag
     3421 cttgttgtgc tgcttgagtg aaactttggg tttcaattac tttacaaaat aaactgattg
     3481 cgtttagttt atccattttc tctcttcttt atattgt
//
LOCUS       DANLXK010000181         3440 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.183, whole genome shotgun sequence.
ACCESSION   DANLXK010000181 DANLXK010000000
VERSION     DANLXK010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3440
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..379)
                     /locus_tag="PXD88_002484"
     CDS             complement(<1..379)
                     /locus_tag="PXD88_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6282007.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEK
                     AAKEKAEAERLAAEKAAKEKAEAE"
     gene            582..2036
                     /locus_tag="PXD88_002485"
     CDS             582..2036
                     /locus_tag="PXD88_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL6282008.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(2111..3400)
                     /locus_tag="PXD88_002486"
     CDS             complement(2111..3400)
                     /locus_tag="PXD88_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL6282009.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
BASE COUNT         1012 a          788 c          716 g          924 t
ORIGIN      
        1 gttctgcttc cgctttctct ttcgccgctt tttccgccgc taaacgttct gcttcggctt
       61 tttctttcgc tgctttttcc gccgctaaac gttccgcttc ggctttttct ttcgctgctt
      121 tttccgccgc taaacgttct gcttccgctt tctctttagc tgctttttct gctgctaaac
      181 gttctgcttc tgctttctct ttcgctgcct tgtcttttgc tgctttttct gctgccgctt
      241 tatcggtttg ttgctgagta gtttgcggtt tagtattcgg ttttgccaca ttgtttgagc
      301 tactgcccga accaccacta ctacacgccg ttaaacccaa taaaatcaaa ctggctaaag
      361 ttactttttt gatagacata aaatgttcct tttgtaagat aaacaaaaat agatgtgtat
      421 aaaacacacg catattgtac aaaaaaaaaa caactcgtca tcaagtactt tttaagattt
      481 ttttgttaaa tttctcctaa atattctaca atgtcagagg tctatatcag cttgaataca
      541 agcggttatt ttttcttaaa attttacaaa aggggcttat tatgtctgaa atctcaacgc
      601 tcgcaccgca gctactttgg cagtggtttg ataaagcctg tgctattccg cacccgtctt
      661 accacgaaaa tgaactggct gaatttattg tgaattgggc aaaatcgaaa aatttctttg
      721 ttgaacgtga tgaagtgggt aatgtgttaa tccgtaaacc ggcaactaaa ggtatggaaa
      781 accgccaaac tgtcgctctg caagcccatc ttgatatggt gccacaagcc aataccggca
      841 cggttcacga tttcactaaa gatccgattc agccttatat tgacggcgaa tgggtaaaag
      901 ccaaaggcac aacattgggg gcagataacg gcattggatt ggcttcgtgc ttggcggtgt
      961 tggatagcga tgatttagcc cacccaacca ttgaagtgtt gctcacaatg accgaagaag
     1021 ccggtatgga aggggcgatt ggtttacgcc cgaactggct aaccgccgat attatgatta
     1081 acaccgacac cgaagaaaac ggggaaattt acatcggctg tgcaggtggg gaaaatgtga
     1141 atgtgacact gccaattttc ttggtgcctc atcagcaaga tagtgcagta accgttacgc
     1201 ttaaaggcct aaacggcggg cattcgggct gtgatattca caccacccga gcgaatgcga
     1261 ttaaagtgtt cgcccgcatt ttggaacaag cccacaacga agtggaattc caaattgcag
     1321 aaattcaagg cggttcggtg cggaatgcca ttccacgaga agcccacgca accttggttt
     1381 tctctgcaaa aaatcagcaa aaattaaccg cttgtttaag ccaaaccgcc gaacaagtaa
     1441 aagcagaact caaaattgcc gagccaaact tccaattttt aattgaagaa gctcaactgc
     1501 ctgagcaagc ctttgacctt gccagcactg ctcgagtaat ccatttctta aatgtgatgc
     1561 caaatggtgt ggtgcgtaat agcgatgtgg tggaaaatgt ggtggaaacc tcactcagta
     1621 ttggtgtgct taacaccgaa gcgagtgagg tgaaagcgac cattcttgcc cgctcattaa
     1681 ttgagggcgg aaaagaggaa attcgcagta aaatccgctc attaaccgca ttagtgggag
     1741 cagaagtgga attttcgggc aactacccgg gctgggagcc aaacccaaat tccaaaatca
     1801 cgccattaac caaagcgatt tatgatgaaa ttttaggtta tgaatctcaa attaaagtga
     1861 ttcacgcagg gctagaatgt ggcttaatca acaaaatcta cccgaatatg gattttgtct
     1921 cgattggacc aactattctc aacgcccatt ctccggacga aaaagtgcat attccggcag
     1981 tggagattta ttggaaactc ctaaccaaac tacttgaaca agcacctgag aaataaattt
     2041 aatcaaaaaa attatataat cttgccccgt aattaattga ataaaacctc aattaattac
     2101 ggggtagctc ttattttctc tgttttaaaa aatgtaccgt gaaagcagca attaataaga
     2161 cgactgctgc acctaaataa agctcgttct ttttccagcc ggcgtctaat aaaatacctg
     2221 caagagttgg ggaaacaatt gagcctaaac gccctacacc gatggcggtg cctacgcccg
     2281 tgctgcggaa atccggtgcg tatagggttg ggttaatggt ataaagcccg gtaatgcagc
     2341 cgttaattaa tccgccaacc aaaatggcta gtgttatcgc aagccctaaa ttgccggcaa
     2401 acacaaaggc aaccacagca gatgcagcca gaatactgaa tgcctgcaaa atatgttttg
     2461 ccgcccagcg actgactaaa aagccgaaaa ttaacgagcc gattgtacca ccaactgaaa
     2521 ttgccattcc cacagtttgg ctttgggttt taggcattcc ggcttcttct aatagtgccg
     2581 gagtccaaga gctgataaag taaaatgagg ctgaaattgc aataaaggca agccaaatta
     2641 gcaacgtatt gcggcgatat tcaggctcga ataaacgggt aattgccact ttgcttttac
     2701 tttttgcctc aatttcagga agttcccagc cgtttcctaa gcctaattta acggcaattt
     2761 gatttaaacg agctttagca ttcaccgggt gttttgaaat taaaaattcc accgattcgg
     2821 gcaatacaaa gaataataaa acgaataccg caccggttaa aatcgaccca acgaggaaaa
     2881 ccgcacgcca gccatattct ccttgcaata acaccgcaga cattccgccc agcattgcac
     2941 caatcccaaa gcctgaggca taaattgcaa tcgctaagcc acgccatttt tggctggagt
     3001 attcactcac tagcacatta gtgccggtta aaatggcggc tacgcctaaa ccggttaaaa
     3061 cacgccatac accaatttca aacgcagaag tagcgaaata agttaggagc attcctaacg
     3121 tggctaagcc tgtgccgatt aaaagcaacg ggcggcgacc aaatttatca gcaagtggtg
     3181 aaagaaagag tgagcctatc gccataccga ataaaccggc actcattaag ctgccgatgg
     3241 ctgcaccgtc taactgcaat tcttctcgga tgcttttggc ggtaaaggcg agtgccatta
     3301 aatcaaagcc gtccagcata ttaagtaaca ccgtaagccc aaccactaac cattggaatg
     3361 aagtcatttt gttatgagca attttttgac gaatatccat aagctccctc tgcatcaaaa
     3421 ttgataaaat tttatttaga
//
LOCUS       DANLXK010000182         3433 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.184, whole genome shotgun sequence.
ACCESSION   DANLXK010000182 DANLXK010000000
VERSION     DANLXK010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3433
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(508..2103)
                     /locus_tag="PXD88_002487"
     CDS             complement(508..2103)
                     /locus_tag="PXD88_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL6282010.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            2252..2692
                     /gene="mioC"
                     /locus_tag="PXD88_002488"
     CDS             2252..2692
                     /gene="mioC"
                     /locus_tag="PXD88_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL6282011.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            2704..2871
                     /locus_tag="PXD88_002489"
     CDS             2704..2871
                     /locus_tag="PXD88_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL6282012.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(2960..3433)
                     /gene="asnC"
                     /locus_tag="PXD88_002490"
     CDS             complement(2960..3433)
                     /gene="asnC"
                     /locus_tag="PXD88_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL6282013.1"
                     /translation="MYSKNTTKSEIDKLDQKILRWLIKDARTPYAEMAKVFGVSAATI
                     HVRVEKMRQAGIIESTKIVVDERKVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEVVE
                     AYYTTGNYSIFIKVMTHTIEELHSVLAGKIQSIDEIQSTETLISLQNPISRDILP"
BASE COUNT         1027 a          701 c          692 g         1013 t
ORIGIN      
        1 tgcgccagcc aatatcaata gttgctgtca tcagcatgac cgagactacg gtatcaaggg
       61 cacagtcagc cgagccgaag ccgacaagcg gttaagacat tgcttaattt cgcaagggaa
      121 tccgattaag gcgtgggtgt tttgggttgt ggtgaggttg tttgggtgga tttattacaa
      181 ggagaaaaat atcaatggaa agtcataaaa caggaaatat cattactgag caagcaagca
      241 agcaagcaag caaagtgtag ctcaatttaa acaagctccg ctacctttta caggtcaaaa
      301 gcggatgttt ttaaaacact tttaatgatg atttaaaggg cgtttgtttt cagtttattt
      361 tgcataactt ttgtgattac ggctatgcaa aatgatttgc aaaactatgc aaaataaatc
      421 gaccgcttac aattctaaaa gaaaagcagt ctattctcta ccacattttg caaaaaagtg
      481 gcaaaaatag accgcttgta tggcatatca ctccgataaa ctcaccccat aaaatggcgt
      541 gtagccaaac ggattttgca caaaaccttg cacccgtttg ctgagtggta cataattgat
      601 agcgtgagcc agcggaataa atggcgtttg ttcgttggca atttccaccg cttgttgata
      661 gagcttcgcc cgctcgtcac ggttttgggt ttgtacagct tgagctaata actgctcaaa
      721 tttctcatcc gtccaacgcc cataatttgt tcccggaata ttagatttgc ttaataaagg
      781 gaagaggaaa ttatcaggat caccattacg gcttgtccaa ccataagtgc cggtagagaa
      841 ctcgccttca cgggtgcgtt tgttaaaatc cgcccattcg tgggtcacta atttcgcttt
      901 caccccgatt ttcgcccaat ccgcctgaat aatttcagcc gttcgacgtg ggtttgggtt
      961 agaagggcgc actaccggtt gtacccaaat ttccgtttca aatccatcgg caaagccggc
     1021 ttctgttaat agggctttgg ctttttcaag gttaaattca tattgcggta aatttggatt
     1081 atagcccaac accgaatcag ggaacggatt acttgccacc gtgccaccgc cttgataaac
     1141 agcctcgaca atcgctttct tatcggttgc ataatgcaag gcttggcgaa ctttggcgtt
     1201 atttaatgcc ggtttggtgc tgtttaagcc gatataagct aaattcagcc cgtctctctg
     1261 taacaaattc accttcggat cttgtttcat ttgggcaata tcggaaatat tcgggaaatc
     1321 aatcacatcg cattcacccg ctttcagttt ggcataacga gtgcccgcat caggggtaat
     1381 actaaaaatc agtttctcaa attttgcttt accttggaaa taatccgggt tcgcaacata
     1441 acgcaccgct tgatcggttt gataggcttg gaacacaaaa ggccctgtgc cgatcggggc
     1501 ttgatccaat aactccggct tgccttccgc cagcaattta tccgcatatt cttttgaata
     1561 aatcgacaag aaatccatcg ctaaggttgt cagaaaagga gcattaggtt gctgtaaggt
     1621 gattttaaca gtgtaatcgt ccactttttc cactgttttt aaaatcttcg gcaaattcat
     1681 ccaatggtaa tagaaataag taccgtcaga gaccttatgg taagggtggt ttaaatccat
     1741 ctggcgttgg aacgagaaca ctacatcatc cgcattcagc gttcgagttg gcgtaaattg
     1801 tttattggaa tgaaatttca cgtctttacg taaatggaat gtgtaactta agccatcgtc
     1861 actgatttcc caacgttccg ccaaactcgg ctcaaccgtt agttcaccgg ctttaaacgc
     1921 taataagcga ttataaattt gttgtgaact ggcgttgaaa tcattggcat cattagtaat
     1981 tgcaggacta agtttcatcg gtggagttgc cacgcaatta atcaacgtat ttaccggagc
     2041 tgctgccacc aaactgctgg cacttaagag taaaacagaa agagataatt gagaaagacg
     2101 cataaagact ccttaacatt ttctactaac ttactcggca ttaacgtatt ttcaaaataa
     2161 ctaaaggtta taatttataa tcagaataat cagttgcaaa ccaatgattc ttggctagaa
     2221 tattggcagt tttttaaacg agagatttac tatgacatca atttgtatca tcaccggcag
     2281 caccttaggc ggtgcggaat atgttgccga tcacattaat gaggtattaa gcgaacaagg
     2341 ttttgaagtg gaactgttta accaagccac ccttgccgat attgagggca aaaccaatct
     2401 gattatcgtt acctctaccc acggagccgg cgagttaccc gaaaatatcc aacagctatt
     2461 tgacgattta gcaaatagct cggctgattt cagcagtatg aaatttggtg taatcggttt
     2521 aggtagctcc gactatgaca ccttctgcaa tgcagtaaat attgttgaag aagctctcaa
     2581 agcgaaaggg gcaagccaag tttgcgaatc actgagaatt gatgtaatga ataatttcga
     2641 ccacgatggc agtgctgaag aatggttacc atcatttgtt gaacaattat aacttaagta
     2701 tcaatgaaca aaatcagtgc aaataaggca aagtggatta aaatcgctat tatcttaatc
     2761 tatatgttca gccctgtaga tattctaccc gaagcgattt taggcccatt cggtttggtt
     2821 gatgatgccg ccgcattaat gctattgatt aagactattt tggaaaaata ggcatagtag
     2881 acaaaatagt tgcaaaaaac caaaacaaaa cgaccgcttg taacccaata caagtggtct
     2941 tatcttttac ttaattcttt taagggagaa tatctcttga aataggattt tgaagtgaaa
     3001 taagcgtttc tgttgactga atttcatcaa tagactgaat ttttcctgct aataccgaat
     3061 gcaactcttc gatggtatgg gtcattactt taataaaaat agaataatta ccagtggtat
     3121 agtacgcctc aacaacttca ttaaattcac taagtttagc aattacttta tcataatctt
     3181 tggctgattt taaaataatg ccaataaagc aacacacgtc atacccaacc ttacgctcgt
     3241 ccactacgat tttggtagat tcaataatgc cggcttggcg cattttttca acacggacat
     3301 ggatagttgc ggcactcaca ccaaaaactt ttgccatttc cgcataaggc gtgcgagcat
     3361 ctttaattag ccaacgtaaa attttttgat ccagcttatc aatttccgat ttagtcgtgt
     3421 ttttactgta cat
//
LOCUS       DANLXK010000183         3421 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.185, whole genome shotgun sequence.
ACCESSION   DANLXK010000183 DANLXK010000000
VERSION     DANLXK010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3421)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3421)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3421
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            270..722
                     /gene="iscR"
                     /locus_tag="PXD88_002491"
     CDS             270..722
                     /gene="iscR"
                     /locus_tag="PXD88_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL6282014.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
     gene            777..1997
                     /locus_tag="PXD88_002492"
     CDS             777..1997
                     /locus_tag="PXD88_002492"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL6282015.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            2124..2507
                     /gene="iscU"
                     /locus_tag="PXD88_002493"
     CDS             2124..2507
                     /gene="iscU"
                     /locus_tag="PXD88_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL6282016.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            2616..2939
                     /gene="iscA"
                     /locus_tag="PXD88_002494"
     CDS             2616..2939
                     /gene="iscA"
                     /locus_tag="PXD88_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL6282017.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            2949..>3421
                     /gene="hscB"
                     /locus_tag="PXD88_002495"
     CDS             2949..>3421
                     /gene="hscB"
                     /locus_tag="PXD88_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL6282018.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFK"
BASE COUNT         1108 a          604 c          744 g          965 t
ORIGIN      
        1 tcgaagtact ctctatcaat taaatttcaa ctgttccgat cagttaggag caaataagag
       61 tgaaattgtg cggtctatga actgtttatc tttggtattt tggtattttc ggctcttttt
      121 tcgtataatc agcgttattg ttttaatctg ttttaatata taaaaccttt tacactaatt
      181 agtcctaaat gattgactaa attggtgggg tatatcaaaa tttagcaact gtttcagaag
      241 attttctgga taatcaatga ggatatttta tgaagcttac ctcaaaaggg cgttatgcag
      301 taaccgccat tttagatatt gctttacacg gaaaactaga gccggttagc ttagccgata
      361 tttcagatcg ccaagcgatt tcactgtctt atttagagca actgtttgct caacttcgcc
      421 gtgacggtat cgtgcagagc gttcgtggac cgggtggtgg gtatcaatta ggtaaaaaac
      481 cggaagagat tagcgtgggt atgatcatct ccgccgtgaa tgaaaatatt gatgtcacca
      541 aatgtaaagg tagtggtaat tgccgtaaag attctcagtg tttaacgcat tctttgtggg
      601 agcggttaga agatcaaatt gagcagtttt tagggacaat ttcagttgcg gatttagccg
      661 cagaacacgc tgatcacgat tgtgaaaaag agcattgtca cgatcatcct catcatcact
      721 aattgcaaat tttttatcaa aaatgaccgc ttgggttgtt ttaactagga gtaacaatga
      781 aattaccaat ttatttggat tacgcagcaa ccacaccaat ggacgaacgt gttgcgaaaa
      841 aaatgatgga atatatgacc aaagacggta tctttggtaa ccctgcttct cgctcacaca
      901 aatttggttg ggaagcggaa gaagcggttg atgtggctcg taaccaaatt gccgatttaa
      961 tcggtgcaga cagccgtgaa atcgttttca cttctggtgc aacagagtcg gataacttag
     1021 ccatcaaagg tgcggctcat ttctatcaaa ccaaaggtaa acacattatc actgttaaaa
     1081 ccgaacataa agcagtatta gatacttgcc gtcagttaga gcgtgaaggt tttgaagtga
     1141 cttacttaga ccctgaagaa gacggtattt tagatttagc taaattaaaa gcggctattc
     1201 gtccggacac aattttagtt tcggtaatgc acgtaaataa cgaaatgggc gtaatccaac
     1261 cgattaaaga gatcggtgca atctgccgtg cgaagaaaat cattttccac gttgatgcga
     1321 cccagtctgt tggtaaaatc gaagtgaatg tacaagactt aaatgttgat ttaatgtctt
     1381 tctcaagcca caaattatac ggaccaaaag gtatcggcgg tctatatgtt tgtcgtaaac
     1441 cacgtgtgcg tttagaagca attattcacg gtggcggtca cgagcgtggt atgcgttcgg
     1501 gtacattgcc tgttcaccaa attgtaggta tgggtgaagc atatcgtatc gctaaagaag
     1561 aaatggcaac ggaaatggct cgtttaaccg tgttacgtga tcgtttatat aacggcttta
     1621 aagatattga agaagtatat gtaaacggtt caatggaaga aggcaaacgt atcggttcaa
     1681 acctaaacat cagctttaac tttgttgagg gcgaatcgtt aatgatgtca ttacgtgata
     1741 tcgcagtatc atcaggttca gcttgtactt ctgcaagttt agagccatct tatgtgttac
     1801 gtgcaatcgg tcgtgacgat gaattagctc acagctcaat ccgtttcact ttaggtcgtt
     1861 ggacgactga agaagaaatc gatcatacta ttgaaatcgt gaaaaaagct atcgtgaaat
     1921 tgcgtgagct ttcgcctctt tgggaaatgt tcaaagaagg tgtagatttg tctaaaatcg
     1981 aatggaatca ccactaattc agaaaaattt tgcaagggca aataatattt gcccctacaa
     2041 aataagcttt catcacaaat agtaaattga atgtaggggc gaaataggtt tcgccggaaa
     2101 taggaaataa aaggaataca aaaatggcat atagcgaaaa agtaattgat cattacgaaa
     2161 acccacgcaa cgtagggact tttgataaag aagcatcaga caccggtaca ggtatggtgg
     2221 gagcaccggc ttgtggtgat attttacgtt tacaaattaa agtgaacgat caaggtatca
     2281 ttgaagatgc acgctttaaa gcatacggtt gtggttctgc aatcgcatca agttctctca
     2341 ttaccgaatg ggtaaaaggt aaatcattag aggaagcagg tgcgattaaa aacagtgata
     2401 tcgctgaaga gttagaatta ccaccggtaa aagttcactg ttcaatctta gcagaagatg
     2461 caatcaaagc tgcaattgca gactacaaag agaaacaagc taagtaatat gatacaatca
     2521 atgcaagcgg tcgatttttg caaaaaattt gcaaaattta accgcttgca tttgctattt
     2581 ctatcttgat ttaatccatt cacataagga aaactatgag cattacctta acagaagctg
     2641 ccgcaaaccg agttcgtaca ttcttagaaa acagaggtaa aggtatcggg ctaaggcttg
     2701 gtgtgaaaac ttccggttgt tcggggcttg cctatgtgct tgaatttgtt gatgtattaa
     2761 atgaagacga tcaggttttc gaacaacacg gcgtaaaagt tattgtcgat gaaaaaagcc
     2821 tgacttactt aaacggtacg cagctggatt ttgtgaaaga aggcttaaac gaaggcttta
     2881 aatacaccaa cccgaatgtt aaaaacgaat gcggctgtgg cgaaagtttt agtgtgtaag
     2941 gaactgtaat gaataaccct tttactttat ttgatttacc cgttcaattt caacttgata
     3001 acgcccagct ttctgagcgt tatcttgctt tacagaaaca gcttcaccca gataactttg
     3061 cccacaaatc aagtgctgaa cagttagaag cggtgcaaaa atctgctgat gtcaatgagg
     3121 cactcaatat tcttaaagat ccgattttac gggcagaagc gatgattgaa atccatacag
     3181 gtgaagccaa aaatctcgaa gaaaaaagta tgcgagatgt ggatttctta atgcagcaac
     3241 tcgaatggca cgaaaaactg gaaaccattg agcatcgtaa agacgaaacc gaactgaccg
     3301 tctttttaaa acagattaaa gcggaacaaa aagcagtatt agaacagctt gaacaaacgt
     3361 taaatacagc cgactggcaa aaagccaatg cgttaaccga caagctccgt tactttaaaa
     3421 a
//
LOCUS       DANLXK010000184         3416 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.186, whole genome shotgun sequence.
ACCESSION   DANLXK010000184 DANLXK010000000
VERSION     DANLXK010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            437..955
                     /locus_tag="PXD88_002496"
     CDS             437..955
                     /locus_tag="PXD88_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL6282019.1"
                     /translation="MRYIKYSLFLVSTMLISGCAELSAINDKVGDWAGQMNQTLYGSK
                     DGSVEQHNGRQVYTKTRNGKYVYQDSGTLQLKRNIDDVFLKVRREFGFRPTNADSDSR
                     KVYHTVQGTFYHVSGYFESDVDTDGVHLGENYLEVIIEKGSKNQVNVEWKATGSARWL
                     DSAKQRLLNTLK"
     gene            1115..3166
                     /locus_tag="PXD88_002497"
     CDS             1115..3166
                     /locus_tag="PXD88_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL6282020.1"
                     /translation="MKLFICEKPSQARDLAGVLGATSKGEGLLATADKSIIVTWGFGH
                     LVEQYQPEDYDEAWKRWAFETLPIIPAQWKMTPKKESKKQYSVVIGLIKKATSVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLTLVVNRDREIANFVPKSH
                     YALAVQLTTTSGETFVAGLAVPEQYLDESGLCLDSRVIQQAEAQIKQTGLAKVVTVET
                     KREKKSPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QFSDVPNVIRSLVASDSGLQTLLPKLNLRQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLEMDKTVATLQSSGHTLVARGNVIVAQGWRILFGKN
                     VDEETGNDDEKQGLPVLTKNQQCNVTHSEVRTLQTKPPAHYTEGTLLDAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLLKKKKSLVASAEAVALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDAFMQKQEAFVKQLIGSCMQQGMSLGNIEIRKCSEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSASNKSAKKSSNLNVLDQLNKLRSQ
                     L"
     gene            complement(3227..3364)
                     /locus_tag="PXD88_002498"
     CDS             complement(3227..3364)
                     /locus_tag="PXD88_002498"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282021.1"
                     /translation="MTLQSRFRQLQQTNVAGIIHLMFSWHSHKVEFPLRMLGDILAGV
                     D"
BASE COUNT         1075 a          664 c          724 g          953 t
ORIGIN      
        1 aactctcttc attgatgaaa taattgcaaa aataactttg atagaggata aatatatgaa
       61 tttccctcca actcgatgga aaatattaca ccagtatcaa actgagctag agctctgggt
      121 tgaacaagcc acagaagagc atatcaagca atacttgact gaaattcacg gatgtgtata
      181 cccagatgac tgggaaaatg tgcgtatatc ccatatgtca tctcaaactc atattttcca
      241 tagctgtgaa cgttgcctag aacttatctc tgcgatatta acaatctcac aactaagcag
      301 acccgatcta aatggtctac tgtgtgacag aaagctataa tattttttct ctttgtaagt
      361 aaaagagttt taagtagatt ttaaccgcac ttttgcaaaa aatgaacgca gataacccgc
      421 ttgtaaggag aattctatgc gttacatcaa atatagttta tttcttgttt ctacaatgct
      481 aatttcaggc tgtgctgaac tctcagcaat taacgataag gttggggatt gggccgggca
      541 aatgaatcag acgctctatg gctctaaaga cggctctgtt gaacagcata atgggcgaca
      601 agtttatact aaaacccgaa atggtaagta cgtttatcaa gattccggca cattgcagtt
      661 gaagcggaat attgatgatg tattcctgaa agttcgtcgg gaatttggct tccgcccaac
      721 gaatgctgat agtgactccc gtaaagttta tcatacggta caaggtactt tttaccatgt
      781 ttccggctat tttgaatctg atgtagatac tgatggggta cacttaggtg aaaactactt
      841 ggaagttatc attgaaaaag gcagtaaaaa tcaggtgaat gttgaatgga aagcaactgg
      901 tagtgctaga tggctcgata gtgcaaaaca gcgtttactt aatacattaa aataataact
      961 catattgctc ctagaacctc ttcccagtgg aaacactggg attttttatg tccttatttc
     1021 tcaaattatt acatcctacg agacaataag tcgttgaatg ctatttaatc agcacattac
     1081 tatttgccta tctgtattca ttttaggaaa taatatgaaa ttatttattt gtgaaaagcc
     1141 atctcaagct cgagatcttg ccggcgtatt gggtgctact tcaaaaggtg aaggcttgct
     1201 ggcgactgcg gataaatcta ttattgtcac ttgggggttc gggcatctcg ttgagcaata
     1261 tcagccggaa gattatgatg aagcgtggaa acgctgggca tttgaaacat tacccattat
     1321 tcctgctcag tggaaaatga caccgaaaaa agagtctaag aagcaatatt ctgttgtaat
     1381 agggcttatc aaaaaagcaa cctccgtggt cattgcgacc gatgctgatc gagaaggtga
     1441 gatgattgct cgtgagctgt tagatttagc tggataccga ggtcaaatcc aacgttgctg
     1501 gctatcagct ctggatgatg ccagtattcg aaaggctctt caaacactca aatcaggtaa
     1561 agaaaccgag gctctttact acgccggtat gggacgtagc cgctcggact ggttgattgg
     1621 aatgaacttc tcccgtttat ttaccttaat ggctcaagca aaaggctatt ccggtaagcc
     1681 attgagcgtt ggtcgagtac aaagtccaac attaactctt gtggttaatc gagatagaga
     1741 aattgctaat ttcgtgccta aatctcatta tgcgttagcg gttcagctga caacaacctc
     1801 tggtgaaact ttcgttgccg ggcttgcagt acctgaacag tatttggatg agtccggact
     1861 ttgccttgat agtcgtgtca tacaacaagc cgaagctcaa attaaacaaa caggcttagc
     1921 caaagtggtg acggttgaaa ctaaacgaga gaaaaaatct ccaccgttac tctacgcatt
     1981 aagtgattta caaggcgaat gtaaccgctt gtttggcttt ggggctcagc aggtgttgga
     2041 tatcgcacaa tccctttacg aagagcataa aatcacgact tatccccgta cagactgtgg
     2101 ttatctgcca gaatcacaat tttctgatgt tcctaacgta atccgctcat tagttgcctc
     2161 tgattcaggg ctacaaactc tcttgcctaa attaaatttg cgacaaaaaa gtcgggcgtg
     2221 ggacgataaa aaaattaccg ctcaccacgg tattatccca accattaaaa aagctgattt
     2281 aagtaaattg agtgaggagg aaatgaaggt ctatgatctc attcgccgcc gatatcttgc
     2341 tcaattctta ccgcacttgg aaatggataa aaccgttgcc actctgcaat ctagtgggca
     2401 cactctggtt gctcggggaa atgtcatcgt tgctcaaggc tggcgtatct tgtttggcaa
     2461 aaatgtggat gaggaaactg gtaatgatga tgagaaacaa ggattacctg tattgactaa
     2521 aaatcagcaa tgcaatgtca ctcattctga agtccgaaca ttgcaaacta aacctcccgc
     2581 acactataca gaggggacat tactcgatgc aatgaaaaat gccgctcgct ttgtgactga
     2641 cccaagactc aaacaacgct tacgtgaaac ggaaggttta ggcacagaag caacccgtgc
     2701 cggattaatt caaggcctaa ttgacaaagg atttctcctt aagaagaaaa aatcactggt
     2761 tgcctcagca gaagccgttg ccttaattga tagtttgccg gacttactga aaaatcccgg
     2821 tttaacggca ttatgggaac aagccctcaa tcagattgcc gaaggtagta tgacacttga
     2881 tgcatttatg caaaagcaag aagcatttgt aaaacaactt atcggcagtt gtatgcaaca
     2941 gggaatgtca cttgggaata ttgaaatccg aaaatgttca gaatgtggta agccaatgag
     3001 aaaaatcaat cacgctaagg gaacattctg gggatgtact ggttatccag attgccaaca
     3061 taaagaggct gataaaaagg taaaatcagc ttcaaataaa tctgctaaga aaagtagtaa
     3121 tttaaatgta ctcgatcaac tgaataaatt aagaagccag ttataaattc aagtagatta
     3181 tggtattatc aaggaacaaa gaacccgttt tgtagattgt cggttatcaa tctacaccag
     3241 ccaaaatgtc tcccagcatt ctgagaggga actccacttt gtgggaatgc caactaaaca
     3301 ttaaatggat aatgccagcc acattagtct gttgtaattg tctaaatcgt gattgcaacg
     3361 tcataatatt acccgattgg ggggattatg acgttgcaat tactgctaac tattct
//
LOCUS       DANLXK010000185         3359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.187, whole genome shotgun sequence.
ACCESSION   DANLXK010000185 DANLXK010000000
VERSION     DANLXK010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..268)
                     /locus_tag="PXD88_002499"
     CDS             complement(<1..268)
                     /locus_tag="PXD88_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL6282022.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICTQN"
     gene            complement(430..1770)
                     /gene="gdhA"
                     /locus_tag="PXD88_002500"
     CDS             complement(430..1770)
                     /gene="gdhA"
                     /locus_tag="PXD88_002500"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL6282023.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            complement(1963..2304)
                     /gene="bamE"
                     /locus_tag="PXD88_002501"
     CDS             complement(1963..2304)
                     /gene="bamE"
                     /locus_tag="PXD88_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL6282024.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            complement(2371..>3359)
                     /gene="yejK"
                     /locus_tag="PXD88_002502"
     CDS             complement(2371..>3359)
                     /gene="yejK"
                     /locus_tag="PXD88_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL6282025.1"
                     /translation="SEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQLHQAY
                     QSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADGGTFIL
                     CRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELKLDATS
                     NRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSAPQTRE
                     VKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPPMRNAL
                     KTLTKFSGSGKGVTISFNAELLGERLLWDELNDTLTIKGLPANLRDQLERNK"
BASE COUNT          987 a          730 c          569 g         1073 t
ORIGIN      
        1 cattttgcgt acaaattaaa tcaagatttt catataaaca ggcatatttc agctctgtaa
       61 tattgggcaa tataatagca attttattac ttgtgccact ttttaacgta gaggcttgaa
      121 tatttttacg ataacccaac ttttcaacgg cagcttgtac tttttctatt ttagctaagc
      181 taacattact ttttccgttt aatacattcg atactgttcc taacgaaaca tttgcttcct
      241 ttgcgatatc tttcatcgta atgatcatat actgcccttt cacatactgc taaaactgag
      301 attggcatag attttaccat aattggcaaa tgaaatacga tttcaattta gcttgtctct
      361 agctacaacc taaaataaaa aaactgcctc gatatatcga ggcagttctt gaataatagg
      421 gataataaat taaacaatac cctgttctaa catcgcattt gccacttttt tgaaaccagc
      481 aatattcgca ccgtttacat agtttacgaa accatctgct tcagtaccat tttctacgca
      541 gttttcgtga attgctttca taatgttgaa taaacgctga tctacttctt cacgactcca
      601 agatagacga attgcatttt ggctcatttc taaacctgag gttgccacac cacctgcgtt
      661 agccgcttta cccggagcat aaaggatttt cgcaccgata aagacttcaa caccacctaa
      721 tgtggttggc atatttgcac cttctgccac acaaatacag ccgtttttca ctaattcttt
      781 agcatcttcg gtatctaatt cgttttgggt tgcacaaggt aaagcgatgt cacatttcac
      841 accccacggt ttttgaccgt caaagtattt taagccttgt tctgttgcat acacagataa
      901 gcgttcacgg cgttcgtttt tcaactctaa taatgcttgt aattgtgcct ctgtcatacc
      961 ggattcaggg aataagacat aaccgttaga atctgaaacc gttaatactt taccgccttt
     1021 ttgaatcact ttttcagctg catattgtgc cacgttaccc gaaccggaaa ttaccactga
     1081 ttttccttcg atctgctgac ctttagtcgc taacatagac tctgcaaaat acaccgcacc
     1141 ataaccagtt gcttccggac gaattaagct accaccccaa gtcagcgatt taccggttaa
     1201 tactgaagta aattcattgc gtaatttttt gtattgaccg aacatatagc cgatttcacg
     1261 acctcccacg ccgatatcgc ctgcaggaac gtcagtatca gcaccaatgt ggcgatataa
     1321 ttcgctcata aacgcttggc agaaacgcat tacttcggca tcagatttgc ctttcgggtc
     1381 aaagtctgaa ccacctttac caccgcccat tggcaatgtc gttaacgcat ttttgaatac
     1441 ttgctcaaag gctaagaatt ttaatacgcc taaatcaacg gttgggtgga aacgaatacc
     1501 gcctttgtat ggaccgattg ctgagttcat ttgtacacgg taaccacggt ttacttgcac
     1561 ttgaccttta tcatcaaccc aagtgacacg gaagctaatt acacgctcag gctcaacaat
     1621 acgccctaat aaaccttgct gggtatattt cggattttta gctaagaaag gggcaaggct
     1681 accgaacact tcttcaaccg cttgatggaa aggggcttgg ttcggatcac gttgtttgat
     1741 tttttggaaa agggcgttta aatcgctcat attatactcc tgaataaatt gatgatgttg
     1801 tgtatttaag atgagcgaag tctagcaagc aattttagct ttgaaaagat agattagaaa
     1861 aatttatcat taaaataaga aaaattaagt ttaaatgctt attttttatt caaaaaaata
     1921 agcccacttt taaaagtggg cttttcgaac caacaaatcg tcctattttt gttctgcatt
     1981 cgcattgctg tcatcaattt ttgatactaa ccctttagca tcaaaataaa taaacagatt
     2041 gcgttgttca ggatctttat aaccttcacg tttaataaac acataatccc aacggtgggt
     2101 ttcaaaaatg ttctttaaca ttggtgtacc aagcaaatat tcaacttgtt ccgctgtcat
     2161 accgacttta agttgagcaa ttttatcttg ttctaagtaa ttgccttgcg gtacatcaat
     2221 acggtacacc actttctcaa cggttgaaca agccgttaca cccagtgcaa gcaacattgc
     2281 agctaaaaga gatttcattt tcataattga ccttttgata atccaaaatt cagataacga
     2341 gataatacct aaactgataa aaattttcca ttatttgtta cgttccagct ggtcacgcag
     2401 atttgccggt aatcctttga ttgtcagtgt gtcgtttagt tcatcccaaa gtaaacgctc
     2461 tcctaataat tctgcgttaa agctaatcgt tactcctttg cccgaaccgg aaaatttcgt
     2521 cagggtttta agggcatttc gcataggcgg aatattctct tccaagccgt attcttgctc
     2581 ttgcgtaaat tgggcaaaat cgatttcatt cagtgttggc aatgcgttgg aaagctcatt
     2641 taacgcaatt tcctctccac tatttatctg ccctttacaa tattcaaaca cctgcttttt
     2701 cacttctcga gtttgagggg cagataactc cccttgctca caataatcgc tcaccgcttg
     2761 caacaaggtt tgattttgca attgtggatt aaacccttct tccgcactta aaaaatccat
     2821 aaagaaatcg gcaattttac gccctactct gcctttcaca aaagttaaat agcgatttga
     2881 cgttgcgtca agtttcagtt cagttaaatt aatgcggcag gcaatatcat attgtgcaat
     2941 ttcgagatat tgcgtgcgtt taatctctaa ctgctcatca accagcattg aattacggct
     3001 atcaatcaac gcaataaaca aatattcggt agctaaaaaa gtgtaacgac acaaaataaa
     3061 agtgccacca tcggcaaacg gatatttaat cagctctgct gcaagcattt tggcacagct
     3121 atggctaaaa ggtaaaaaat cggtttcttg ctccaacaag cggttgagct gttgagcgaa
     3181 aaccgactcc ggtttaaata taccgtaagc ctttgcttta ctttgatagg cttgatgtaa
     3241 ttgcaacatc atttgatcga cttcagggga aattgccaat aaattttctc gcaaaaacgt
     3301 attaagctcc gggttctcgc cctctgtttt ttgtaattga tgtaacacga tttcagaaa
//
LOCUS       DANLXK010000186         3294 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.188, whole genome shotgun sequence.
ACCESSION   DANLXK010000186 DANLXK010000000
VERSION     DANLXK010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..591)
                     /locus_tag="PXD88_002503"
     CDS             complement(<1..591)
                     /locus_tag="PXD88_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282026.1"
                     /translation="MKKYLMLCSLWFLSACFNESYDFRGKEFEEPVQAILVESDKIYF
                     IGSTIDAIFDKTLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSP
                     QFIAKNLTMSDIQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQP
                     IIAKAKSYQKSIEFSFDDTISVIAAPITIPASIILFV"
     gene            825..1115
                     /locus_tag="PXD88_002504"
     CDS             825..1115
                     /locus_tag="PXD88_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL6282027.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            1184..2824
                     /gene="groL"
                     /locus_tag="PXD88_002505"
     CDS             1184..2824
                     /gene="groL"
                     /locus_tag="PXD88_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL6282028.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2949..3275)
                     /locus_tag="PXD88_002506"
     CDS             complement(2949..3275)
                     /locus_tag="PXD88_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL6282029.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT         1047 a          528 c          731 g          988 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
      541 aaagcatgcg gagagaaacc atagtgagca gagcattaag tattttttca ttttattatc
      601 ctatcttgaa attaatagtt taaatggtat aagagaattg gggtttttct aaacagaaac
      661 agatttctta ggtatatagt tttatcaaaa atggtcaaat ttgtaaaaaa ttttacaaat
      721 ttgaccgctt gcacttgaaa ctctaaaatc tgcctttata ttgttaggcg ttacgcattt
      781 tgcgtgaagt tttatttatt catttttaag aaaaggaaca tattatggca cttcgtccat
      841 tacacgataa agttatttta aaacgtgaag aagttgaaac aaaatcggca ggcggtattg
      901 ttttaaccgg ttcggcagca acaaaatcaa cccgtggcaa agtaattgca gtaggaacag
      961 gtcgcatttt agacaatggt tctgttcagc ctttagcagt taaagtgggc gatgtagtga
     1021 tttttaacga aggctacggc gtaaaaaccg agaaaattga cggcgaagaa gtgctaattt
     1081 tagcagagca cgatattttg gcgattgtag aataatttcg ttctgcacaa gcggttaaaa
     1141 aagcaaaatt ttttacatat ttcaaataca aaggatttag aaaatggcag caaaagacgt
     1201 gaaatttggt aacgatgcac gcgtaaaaat gttaaaaggc gtgaatattt tagccgatgc
     1261 ggtaaaagta actttaggtc cgaaaggtcg taatgtggtg ttagatcgtg cttatggtgc
     1321 accaacgatt acaaaagacg gtgtgtcggt tgcccgtgaa atcgaattag aagataaatt
     1381 tgaaaatatg ggggctcaaa tggtgaaaga ggttgcctct aaagccaatg atgccgccgg
     1441 tgacggtaca actaccgcaa ctgtattagc tcaagcgatt gtaaacgagg gcttaaaagc
     1501 agtggctgcg ggtatgaacc caatggattt aaaacgtggt atcgataaag cggttgcagc
     1561 agtggttgaa gagttaaaag cgatttcaaa accgtgcgaa acctcaaaag aaattgagca
     1621 agtagggacg atttctgcaa actcagattc aacagtcggt caattaattg ctcaagcaat
     1681 ggaaaaagtg ggcaaagagg gcgtgattac tgttgaagac ggtacaggtt tagaagatgc
     1741 attagacgtg gttgagggta tgcaatttga ccgtggttac ttatcgccat actttatcaa
     1801 taaaccggaa gccggtacgg ttgagttaga aaacccatat attcttttag tggataaaaa
     1861 agtgtctaac attcgtgaat tattaccggt gttagaaggt gttgcaaaag caggtaaacc
     1921 gttattaatt attgccgaag atattgaagg cgaggcgtta gctaccttag tggtgaacac
     1981 tatgcgtggt atcgtgaaag tggcggcagt gaaagcacct ggctttggtg atcgccgtaa
     2041 agcaatgtta caagatattg cgatcttaac tgcaggtact gtgatttctg aagagatcgg
     2101 tatggagctt gaaaaagcaa cccttgaaga gcttggtcaa gcaaaacgtg tggttatcag
     2161 caaagataac accacaatta ttgacggtat tggtgatgaa actcaaatca aaggtcgtgt
     2221 agcacaaatc cgccaacaaa tcgaagattc aacttcagat tacgacaaag aaaaactaca
     2281 agagcgtgta gcaaaattag ccggtggtgt tgcggtaatt aaagtaggtg cggcaactga
     2341 agtggctatg aaagagaaaa aagaccgtgt tgatgatgct cttcacgcaa cccgtgctgc
     2401 ggtggaagaa ggtattgtac cggggggcgg agttgcttta gtgcgtgcag ccaacaaagt
     2461 ggctgataca ctaaaaggcg ataacgaaga gcaaaatgta ggtatcaaac ttgccttgcg
     2521 tgcaatggag gctccattac gccaaatcgt tgccaatgca ggtgaagaag cctcagttgt
     2581 agcccgcaac gtgaaagaag gttcaggcaa ctacggctat aacgcaggta cagagcagta
     2641 cggcgatatg cttgaaatgg gaattttaga cccaactaaa gtgactcgtt cagcacttca
     2701 attcgcggct tctattgcag gtttaatgat cactacagaa tgtatgatta ccgatctgcc
     2761 aaaagaagag aaattagatc ctgccgcaat gggcggtatg gggggaatgg gcggaatgat
     2821 gtaattgccc attgagtgaa caaaagctac tgaaattaat tcagtagctt ttttgttggt
     2881 aacaagtggt taaatttatg ctattttttg caaataaaaa accaagcaag taagcttggt
     2941 tttagcgttt attgatgttt ttgtttaagg ctgtttagtg ctgttaaacc tttctcacaa
     3001 cttttttgct gtaattcaga atccattttt aggatttgtt gctttgttaa agaaagttta
     3061 tttttcattt ttagcacttg agtatgagta ccaggctgtc tttctgcatc agagaccaat
     3121 ttatttgccg tgttaaacat tttctcacat tcagttggca aatttttact taaagtaggt
     3181 tttgcaactg taagtgatga ggttttaaca cttgctatag cattactgga aaccaatatg
     3241 gtacaaagtg ttattcctaa aattcttttt agcatgcgtt ctccacacat taag
//
LOCUS       DANLXK010000187         3273 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.189, whole genome shotgun sequence.
ACCESSION   DANLXK010000187 DANLXK010000000
VERSION     DANLXK010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3273
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..612)
                     /locus_tag="PXD88_002507"
     CDS             complement(<1..612)
                     /locus_tag="PXD88_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL6282030.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPN"
     gene            complement(658..1230)
                     /gene="rpoE"
                     /locus_tag="PXD88_002508"
     CDS             complement(658..1230)
                     /gene="rpoE"
                     /locus_tag="PXD88_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL6282031.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            complement(1452..2996)
                     /gene="leuA"
                     /locus_tag="PXD88_002509"
     CDS             complement(1452..2996)
                     /gene="leuA"
                     /locus_tag="PXD88_002509"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL6282032.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
BASE COUNT          887 a          721 c          583 g         1082 t
ORIGIN      
        1 atttggctct gattctgtat tggaagaagt ttgtgctttt tgcttttctt cctcagataa
       61 ggttaaattt ttaacgttat tagtacggcg ttgtaactca tggttttcta ataacgcatt
      121 aatcttacgc tgttgaagct ctaactgttc ttctgttggt tgatcttgaa ctggcgcatt
      181 ataacttacc gcttcaactg aattgctaaa tggcaatgtt tgtaatactg gttgttgcgt
      241 ttgagctatt tcatcactcg cattcattga attaacccct aataccgcaa ctaagcacac
      301 tgaagctgca ataccggctt gcataattgg agttccccaa cgcttgagct tgagcaataa
      361 gcctttaggt ttctctacat ttgcttgaga ttcaatttct tcattttcca gtaatgcttc
      421 cattttagca gagaaatctc tccctaaaat gatctcatca ccttgcatca cactacgaat
      481 agtgtgataa cttgcccatt tttgctgtaa ttcagggctg ttagttaatg tttctacaaa
      541 tgctgtatca acattttgcc catccatata agctgaaagg cgttcatttt gttgagtgat
      601 gcgttcttgc ataattgact ccaatgattt aaatctcttc taaaataatc tttctatcta
      661 ttgcataagt ggcttgattt tagcatcaat cgcttccctt gctcggaaaa tacgggaacg
      721 tacagtacca accggacatt ccatcacttc tgcgatttct tcgtaactta gcccttccaa
      781 ttctcttaaa cgaatggcgg ttttaagctc atcaggtaaa ttttcaatcg tatcaaacac
      841 gactttcttt aattcctcgg ataatatcaa attctctggc gtatcacttt cacgaagttg
      901 cgcgcctaca tcataacttt cagcgtcttc ggcaagaata tcttcttttg gcggtcttct
      961 gcctaaagag gttaaatgat ttttcgcagt attcactgca atgcgataaa gccacgtata
     1021 aaaagcactt tcgccacgga aagactctaa agaacgatag gctttaataa aagattcttg
     1081 cacaatgtcc ggaatatcat ctcttgcaac ataacgagtc agcaaaccgg ctactctatt
     1141 ttgataacgt acaacaagta aattaaatgc ttttttatca cctttttgtg ctttttcgac
     1201 taattcttgg tcggtgatct gttcgctcaa ctgcggactc tcctaaatat caatatgtca
     1261 ttttccattg cacactttgt tagtgtgtgc tttatgacaa aagttcaaaa aatttgaaaa
     1321 attgtgtaat tttttacatt cctagataaa acctacttaa taaactaagc aagcggtcgg
     1381 attttagcga aattttgcaa aaatttcaaa aaatccgacc gcttgtctat gttatgcttt
     1441 cgctctataa gttatttctt cgcttttaaa tctgccactt tttgtgaacg gtaaatcgca
     1501 ttaatggcgt gaattaaagc tcgggctgaa gattccacaa tatcggttgc caaacccaca
     1561 ccgtggaatt ttcgaccttc atattccact acaatatcca cttgccctaa tgcttctgct
     1621 ccttcgcctt tcgcagtcag attatagtgc gacattttta gctccattcc cacaatgttc
     1681 ataatggcat tgtaagttgc ctcaactgga ccatttcccc cttgagatgt agcactttga
     1741 cgaacgccgt ctaattccac ctgtacaaaa gccgaagccg gtaaaccgct gattagttgg
     1801 gtggtaatta catctaattt taagcggtct tcatcgcctt gctgcatatc aatgaaggca
     1861 agagcttcta agtcataatc aaacacttgc ccttttttat cagcaagttg caagaaggcc
     1921 tcataaagtt tatctaaatc gtaatccgtt tccgtataac ccatatcagc catatgccct
     1981 ttcaccgctg ctctacctga acgggcagtt aaattcagct tctctttttt caagccgatg
     2041 gtttccggcg acataatttc ataagtattt ttatttttca gcataccgtc ttggtgaata
     2101 cctgaagagt gagcaaaggc attgctaccg acaatcgctt tgttcggctg aatcggcata
     2161 ttgcaaagct ggctgaccat ttggctgaca cggtgaattt cttgggtatt aatgcgggta
     2221 tcaaccccca taaattcttg gcgggtttta attgccatta ccacttcttc aagagcggtg
     2281 ttaccggcac gttcgccaat accgttgata gtacactcaa tctgtctcgc tccgttttgc
     2341 accgctgtca atgagttggc ggtagccata cctaaatcgt tatggcagtg aacagagaca
     2401 atcgctttat cgatattcgg aacacggttc atcacttggt ggataatatt gccgtattca
     2461 ttcggtaaac agaaaccgac tgtatccgga atattcactg tggttgcacc ggcattaatg
     2521 gcagcttcta caatgcggca gatgttatca attccagtac gcccagcatc ttcacaggaa
     2581 aactcaacat catcagtata atttctggcg cgttttaccg ctgcaaccgc catttcgact
     2641 acatcatcaa atgaacgttt taatttagcc tcaacgtgta atgccgagct ggcaataaag
     2701 gtatggatac ggaatgcttc tgctactttt aaggcttcat aagctgcatc aatgtctttt
     2761 gcaaccgctc gggaaagcgc cgccacccgg ctgtttttga tatgacgagc gatggtttgt
     2821 actgattcaa aatcgcccgc tgaagaaact ggaaaaccga cttccatcac atcaacccct
     2881 aaacgttcta aagcaagggc aatttgcaat ttttctttta cggttaaact tgcttttaat
     2941 gattgctcac catcacgtaa agtcgtatca aaaataataa tgttattgtt gctcatagaa
     3001 gcctcttttt aggtgttttt atttgataaa aaaagcccgc attttaaggt gcgggcaaga
     3061 atgtggatag tccatttact ttttccaatc aatctttatc ctcgcacaaa atacgataac
     3121 agagataatc ggagtaaggt aaatttttcc atgttgtgtt gtatgtttat gtttgcattg
     3181 ttattcagta gttgaggtgt atattatcct tatccaaatc aatgtcaata gcatttttct
     3241 cttcacgcaa ccgtttacca gcccattaat tca
//
LOCUS       DANLXK010000188         3265 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.190, whole genome shotgun sequence.
ACCESSION   DANLXK010000188 DANLXK010000000
VERSION     DANLXK010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..441)
                     /locus_tag="PXD88_002510"
     CDS             complement(<1..441)
                     /locus_tag="PXD88_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL6282033.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFAL"
     gene            complement(446..1426)
                     /gene="thiL"
                     /locus_tag="PXD88_002511"
     CDS             complement(446..1426)
                     /gene="thiL"
                     /locus_tag="PXD88_002511"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL6282034.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            complement(1489..1902)
                     /gene="nusB"
                     /locus_tag="PXD88_002512"
     CDS             complement(1489..1902)
                     /gene="nusB"
                     /locus_tag="PXD88_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL6282035.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            complement(1983..3239)
                     /gene="pilQ"
                     /locus_tag="PXD88_002513"
     CDS             complement(1983..3239)
                     /gene="pilQ"
                     /locus_tag="PXD88_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL6282036.1"
                     /translation="MSIVLKNAPTSLIFTYLAEETGKNMVLDDNIETKSTLRLENKSV
                     DEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPIMNLQNNGQNTPLVTAPKLI
                     TKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSNSLIVKDSAKSLKNIENLVK
                     QLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNNVTNNL
                     NVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQG
                     TEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGL
                     ITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKIS
                     KRELVIFVTPYILQSNEKSSNRKKSK"
BASE COUNT          962 a          649 c          664 g          990 t
ORIGIN      
        1 cagggcaaaa atggctgcga gaatatcatc aaacataatg cctaaaccgc tttctaattt
       61 ttcatcaaaa tagcggattg gaaaaggctt caaaatatca aaaatgcgaa agctgataaa
      121 ggcgagcagg tagccaagaa gattgtattc aggcaaacag gtgaacatca aaaagatggc
      181 aactatttcg tcccaaacaa ttcgcccgtc atcgtgtact tctagatctt ggctggcttt
      241 ggtgcaaata acacaaccgg caataaaaga aactagggtg agtaagccga aaaacagggc
      301 ggattgtgtg atagaccaca aggctattgc tacaattagc ccggcgaggc taccccaggt
      361 gccgggagca ggctttaata agcctgaacc aaagccaaag gcaaaaaaat gaatcggatt
      421 tttaagatta attggtttca ttgcgttatt ttttaaaatg atcgtagcct cgttgtgagg
      481 gcaaggtgac aggctgatta tgacgtaata gggttaaacc ttctttagcc gaacgaattt
      541 gcccaataca tgtataagtt actccgatat tggctaatgc tttgtctaat ttggctttgt
      601 tgtcatttgg cacggtaaag cagagttcgt aatcttcgcc accgtttaag gcaaaatatt
      661 ctgcctctgt tcgagaataa caactaagta agacgtcaga caaggggaaa ttctcaaggt
      721 ttaatactgc accacagtca ctgcgcttta aaatatggct taaatcagac aatagaccat
      781 ctgaaatatc aatcgctgca ttagcaatag aggcgatagt caagccaagt aaaactcgag
      841 gtgttgggcg taaatggcgt tgaatcaggt agctttgctc tttattccaa ttcacttgct
      901 cgctttgctg atttagcaga agttgcaaac cacctgcact gtcaccgagt gtgccggaaa
      961 catagatcca atcgcctact ttagcattat ggcggaataa gcctctatct tgtggcacaa
     1021 tcccttgagc tgtgattgtc aaagatagtg gtccacaagt agtatcccct ccaatcaaat
     1081 caacattata gtgatcaaga atctcaaaga aatgttcact aaattcagct agccaatcgt
     1141 gattaatttc aggtaaggtt aaggctaaag agatccatgc aggttctgca cccattgcgg
     1201 caagatcgct taaattggac gccacacttt tataagcgag atcggcaggt gaaatagtcg
     1261 gtagaaaatg agtgccgcaa acaagggtat cggttgtgat cgcaagttgc tgatttggtt
     1321 tgagtgatgt gagcgcacag tcatcgccga tagaaagtaa aacatctttg cgaggtgggc
     1381 gttgagaagc attaaaatag cgttcgataa tatcaaattc acccataaaa aatctccttg
     1441 agcgttataa tcaaaatccc caatttatgt ataaattggg gaatcttatt attttctgcc
     1501 taatgctggg gctaatttat ctaaaatgcc gttaatgtat ttgtggctgt catcagagcc
     1561 gaacacttta gcgacttcaa tcccttcatt gatgactaca cggaaaggca catcgtgttc
     1621 aaattttaat tcgtaagttg ataaacgcaa aatagaacgt tcaataggat caacatctga
     1681 ctctttacga tctaaataag ggcgtaatgc ttcatcaatg gcttctacat tatccacaac
     1741 gccacggaaa agtttacgga aataaggcat atcaacgcct ttcatatctt gatcggtcac
     1801 aaacgccaat tccacttctt caaccgtgtt ttgggaaata taccaagaat aaatggcttg
     1861 caccgcacat tctcttgcac ggcgacgtgg ggaaattttc ataaaacctc taaatcttta
     1921 actcaaaaaa tgacggctga ttctatcaca cttcccctat ttttgcttgc gtttatgatg
     1981 tgctattttg attttttgcg gttgctgctc ttttcattag attgaaggat ataaggcgtc
     2041 acaaaaatga ctagctctct tttgctgatt ttatctcgag tttgactaaa taaccgcttg
     2101 atgaagggaa ttgagcctaa aatcggcact ttatcttcgc ctttttgggt taaatgttga
     2161 aaaataccac caagtacaat ggtttcgccg tgtttggcaa atacttgcgt atttagctct
     2221 tgtttatcaa tcgtaattaa gccactactg ccggattggg aatttggcga attttgggta
     2281 acgatcagat cgagtagaat ttgattttgg gttgaaaggt gtggaacgac ttcaagccct
     2341 aataccgctt ctttaaattc gacatcggtg gcttccgatt tggtgttgta catcacataa
     2401 ggaatttccg tgccttgctt gatacttgcc ggctttttat tggtggttaa caggcgtggg
     2461 ctggcaataa tttccacact attttcttgt tctaatgcac ttaattctaa atcaagcact
     2521 ctgctattaa tggacgaaac ctgtaatacg gcagatgctc caccagtaat cggaaaattt
     2581 acatttaagt tattggtgac attgttgagt ccattgcctt ccagccgtcc gccaaattta
     2641 tagtgcccag ccccacgaga aaaaattccc cagcgaacgc caagctcttg caaatgctcg
     2701 ctactgatag tgacaattct agcctcaatc gcaatttgct cggtgggttg gtcgagctgt
     2761 tttactaaat tctcgatatt tttaagcgat tttgcactgt ctttcacaat caggctattg
     2821 cttctttcat caaagtgaat ataaccgttt tccgataaaa acgttccgct gcctttggtt
     2881 aacgactcaa tcacctctga agcctttgca taatgtagtt tcaaggtttt tgtgattaac
     2941 ttaggggcgg tgacaagcgg tgtattttgc ccattatttt gcaaattcat tattggcaga
     3001 ggcgttaagt cagccgcttt ttcctctttt ttgtgaatat aaacaatatc atcttcttgc
     3061 gttaaggata atttattgac tttgccaagc gttttaaaaa tctcgtcaac cgatttattt
     3121 tctaatcgta gtgttgattt ggtttcaata ttatcatcaa gcaccatatt tttaccggtt
     3181 tcttccgcta aataagtaaa aataagcgaa gttggagcat tttttaaaac tatggaaatg
     3241 gtattcgcat aggctaatga aaaac
//
LOCUS       DANLXK010000189         3228 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.191, whole genome shotgun sequence.
ACCESSION   DANLXK010000189 DANLXK010000000
VERSION     DANLXK010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            6..842
                     /locus_tag="PXD88_002514"
     CDS             6..842
                     /locus_tag="PXD88_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL6282037.1"
                     /translation="MLFACINTLIPKLTSISPIDSNVIALVQYLAAFIFLVPSMNNIG
                     FFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGIALLMTSPLFVTIGSGLF
                     LKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAAAFFWAGYSLMVKKLSRY
                     DSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGFLILLGFFTALAQLAVAK
                     AYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGAAIIIAATIYITHAETKQ
                     SN"
     gene            complement(921..1412)
                     /gene="ilvN"
                     /locus_tag="PXD88_002515"
     CDS             complement(921..1412)
                     /gene="ilvN"
                     /locus_tag="PXD88_002515"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL6282038.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(1405..3126)
                     /locus_tag="PXD88_002516"
     CDS             complement(1405..3126)
                     /locus_tag="PXD88_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL6282039.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
BASE COUNT          890 a          697 c          606 g         1035 t
ORIGIN      
        1 ccggtgtgtt atttgcctgt atcaatacct taattcccaa attaacgtcc atttcaccga
       61 ttgactcgaa cgtgattgca ttggtgcaat atttagctgc ctttattttc ctcgttccca
      121 gcatgaataa tatcggtttc ttctcttcat taaaaaccga gcattttggg caacactgtt
      181 tccgtatttt tctatctgcg attggtattc aatgttggac aatggcactc gctaaccaat
      241 tacctatttg gcagggaatt gcgttattga tgacttctcc attgtttgtg accatcggct
      301 ccggtctgtt tttgaaagag aaagtggata aaaagcgttg gattgcaacc gcaatggggt
      361 ttgttggggc gatgattatt ctagagcctt ggagcgatca ttttgaaatg attgcgttac
      421 tgccgattgc cgcggctttt ttctgggcag gttattcgct aatggtgaaa aaactctctc
      481 gttacgatag cccaactacg atggtcgctt acctgtttat tctaattacg ccttttaatt
      541 tgttgattgc actcacgaac cttagcccta gtgggtttag tctgccttct tggagcgatt
      601 tcggcttttt aatcttactt ggtttcttta cggcgttagc gcaactggcg gtagccaaag
      661 cctacagtgt agcagatgct tcctacattc agccgtttga ttttattaaa ttacctttga
      721 acgtattagc cggttggctt gtatttaact gggtgccacc gggtaaatta tggctaggag
      781 ctgcgattat tattgctgcg accatttata ttactcacgc tgaaactaaa cagagtaatt
      841 agcaacaaat tcacgctaca taaaaatccc tttatctcaa agataaaggg atttgcaaat
      901 tttaagctaa aattgaccgc ttacagagcg tttttatcgc cacgagatag actaatcacg
      961 ccagagcgaa caatctctac aatcgttgtt tcttctttaa ctgcctcaat aaatgcattg
     1021 agcttctcgg tagaaccgga taattgaatg gtgtaaagtt tcggtgttaa atctacgatt
     1081 tgcccacggt aaatatctac catacgtttc agttcatcac gagatgaacc tgtagctcgc
     1141 acttttacca ataacacttc acgctcaacg tgttcataag cacttaagtt actcacttta
     1201 aacacatcaa tgagtttgtg tagttgcttt tcgatttgtt ctaacacctg ttcttcgcct
     1261 tgcgcgacaa ttgtcatacg ggaaaggctt ggatcatcag taggggcaac ggtcaagctt
     1321 tcaatgttaa aaccacgctg cgagaaaagg gcaactacac gagataatgc acctgattca
     1381 ttttctaata atacggctaa tgttctacgc atctgttctc tccgttttac ttaacatcat
     1441 ttcattcatt gctcctccac gcacttgcat tgggtaaaca tgttccgttt catcgaccaa
     1501 tacatcaaca aatacaagct tatctttaat tgagaatgcc tcagttaatt ttgcctccaa
     1561 ttcagaaggg tggtcgattt gaatcccaac gtggccataa gcctctgcta atttagcaaa
     1621 gttaggtaga gaattcatat acacctgtga atggcggcca gagtaaataa tatcttgcca
     1681 ctgtttcacc atacctaaga aacggttatt taagctgaca atcacaatcg gtgtgtcgta
     1741 ttgctttgcg gtggaaagtt cctggatatt catttggata ctaccatcac cggttacaca
     1801 aacaacagtg gcatcagggt gggcaaattt tacccccatc gcagcaggta agccaaagcc
     1861 cattgtgcct gcaccgcctg aattaatcca acgacgtggt ttatcgaacc cataatgcaa
     1921 tgcagcaaac atttgatgtt gtccaacatc tgaggcaaca taagcctccc cattggtcaa
     1981 cttgtggatc attctaatca cttgttgtgg cttaatcaca tcactgtttt cttcaaaggc
     2041 taagcaatta cgagctttcc aagcatcaat ttgttgccac caagcggtta aatctacctg
     2101 attttttgca agattttcct cacctaataa agataaaaat tcttccatta catccttagc
     2161 actgcctaca attggaatat aagcttgtac tgttttggaa attgaggctg gatcaatatc
     2221 cacgtggatc acttttgcat tcgggcaata ttttgctaag ttatttgttg tacgatcatc
     2281 aaaacgtacc ccaataccta aaatcaaatc actttcgtgc attgcattat ttgcctcaaa
     2341 agtgccgtgc atgcctaaca tacctaaata ttgcttatca gaggcaggat aagcacctaa
     2401 tcccattaat gaacaggtta caggtagatt tagcttttgt gcaaactctg taatttctgg
     2461 cgaaccctct gcactaatta caccaccgcc tacataaagc actggacgtt ttgctactaa
     2521 tagtgctttt aatgcttttt taatttgccc tttatgccct tgaactgttg ggttataaga
     2581 acgcattgat acttcttgcg gatattcata gggatattta tttaatggat tgactacatc
     2641 tttaggaata tcaataacta ccgggcctgg tcgaccggtt gatgcaatat aaaaggcttt
     2701 tttgataatt tcaggaattt cttctgtatt ttttactaag aaactgtgtt ttacaaccgg
     2761 acgagaaatg ccgatcatat cactttcttg gaatgcatct gtcccaatta aacttgatgg
     2821 aacttggccc gacagtatta ctaacggaac agagtcggta taagcagtta aaataccagt
     2881 aattgtattc gttgctcccg gacctgaagt cactagcaca cagccgactt tacctgttga
     2941 acgggcatag ccatcagcca tatgtacagc accttgctcg tgtcgaacta aaacgtgatt
     3001 caatccaagt gtatgaattg catcataaat atcgagtaca gagccacccg gatagccgaa
     3061 aacgtattct acgccttcat cctttaagga ctgtacaatc atttctgcac cagaaagttt
     3121 tttcattgaa tcctccaaca aaatagcatt ttcttctcta agatggttgg attttgcagt
     3181 aaaattttat tgatgtctag ttcttattat gggatcaaat gctagatt
//
LOCUS       DANLXK010000190         3210 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.192, whole genome shotgun sequence.
ACCESSION   DANLXK010000190 DANLXK010000000
VERSION     DANLXK010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(77..781)
                     /locus_tag="PXD88_002517"
     CDS             complement(77..781)
                     /locus_tag="PXD88_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HDL6282040.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYY
                     GDPLGEMRLVSRVFEM"
     gene            complement(872..1699)
                     /locus_tag="PXD88_002518"
     CDS             complement(872..1699)
                     /locus_tag="PXD88_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_034033256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxacillin-hydrolyzing class D beta-lactamase
                     OXA-2"
                     /protein_id="HDL6282041.1"
                     /translation="MAIRIFAILFSIFSLATFAHAQEGTLERSDWRKFFSEFQAKGTI
                     VVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNR
                     GFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWI
                     EGSLAISAQEQIAFLRKLYRNELPFRVEHQRLVKDLMIVEAGRNWILRAKTGWEGRMG
                     WWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEALPPNPAVNSDAAR"
     gene            complement(1776..2567)
                     /locus_tag="PXD88_002519"
     CDS             complement(1776..2567)
                     /locus_tag="PXD88_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(3'')-Ia family aminoglycoside
                     nucleotidyltransferase AadA25"
                     /protein_id="HDL6282042.1"
                     /translation="MREAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKP
                     YSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYP
                     AKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ
                     DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPA
                     QYQPVLLEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
     gene            complement(2625..3158)
                     /gene="aadB"
                     /locus_tag="PXD88_002520"
     CDS             complement(2625..3158)
                     /gene="aadB"
                     /locus_tag="PXD88_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000381802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside nucleotidyltransferase
                     ANT(2'')-Ia"
                     /protein_id="HDL6282043.1"
                     /translation="MDTTQVTLIHKILAAADERNLPLWIGGGWAIDARLGRVTRKHDD
                     IDLTFPGERRGELEAIVEMLGGRVMEELDYGFLAEIGDELLDCEPAWWADEAYEIAEA
                     PQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRLACTSLG
                     AEKVEVLRAAFRSRYAA"
BASE COUNT          736 a          908 c          788 g          778 t
ORIGIN      
        1 agtgccgatt gaccgagctt taacggcact gttgcaaagt tagcgatgag gcagcctttt
       61 gtcttattca aaggccttac atttcaaaaa ctctgcttac caggcgcatt tcgcccaggg
      121 gatcaccata ataaaatgct gaggcctggc ctttgcgtag tgcacgcatc acctcaatac
      181 ctttgatggt ggcgtaagcc gtcttcatgg atttaaatcc cagcgtggcg ttgattatcc
      241 gtttcagttt gccatgatcg cattcaatca cgttgttccg gtacttaatc tgtcggtgtt
      301 caacgtcaga cgggcaccgg ccttcgcgtt tgagcagagc aagcgcgcga ccataggcgg
      361 gcgctttatc cgtgttgatg aatcgtggga tctgccactt cttcacgttg ttgaggattt
      421 tacccagaaa ccggtatgca gctttgctgt tacgacggga ggagagataa aaatcgacag
      481 tgcggccccg gctgtcgacg gcccggtaca gatacgccca gcggccattg accttcacgt
      541 aggtttcatc catgtgccac gggcaaagat cggaagggtt acgccagtac cagcgcagcc
      601 gtttttccat ttcaggcgca taacgctgaa cccagcggta aatcgtggag tgatcgacat
      661 tcactccgcg ttcagccagc atctcctgca gctcacggta actgatgccg tatttgcagt
      721 accagcgtac ggcccacaga atgatgtcac gctgaaaatg ccggcctttg aatgggttca
      781 tgtgcagctc catcagcaaa aggggatgat aagtttatca ccaccgacta tttgcaacag
      841 tgcccgttga agtaaccggc gctgcgcggt tttatcgcgc agcgtccgag ttgactgccg
      901 ggttgggcgg taacgcttca atagagcgaa ggattgcccg cacgattgcc tccctcttga
      961 aaagatcatc cattctgttt ggcgtatcaa tattcagtgc gaagaatacg gagccagtcg
     1021 gccactcaac ccatcctacc caccaaccca tacggccttc ccagcccgtc tttgcacgca
     1081 gtatccagtt gcgaccggct tccacaatca tgagatcctt gaccaagcgc tgatgttcta
     1141 cccgaaaggg cagctcgtta cgatagagct tcctgagaaa tgcaatttgc tcctgcgccg
     1201 agattgcaag gctgccttct atccagtaat cgccattact tgtcgaagga tcggcgttgc
     1261 catagtcgat tttcttcaaa tagcgccgag ctttgtcatc accaatttcc tttgcaaata
     1321 gctcatacac ccaaacagta gaattccgca ttgctgatcg caaatcttgg tcttgattgt
     1381 ggcctgcaaa gcccctgtta acgccgtccc atcgaaaaat ctggaactca tcacgaacag
     1441 cgcctgcatc aagtgcaaaa agtgtatgag gtatcttgaa tgtcgatgca ggcgagtagc
     1501 gtttcttcga tcgcacagga tcaaaaacca acatggcacg atccgcttgg cgttcgtctg
     1561 ccacaactat cgtgcctttg gcttgaaatt cgctgaaaaa cttcctccag tcagaacgtt
     1621 ctagcgtgcc ttcttgcgca tgcgcgaaag tggcaagaga aaaaatggag aaaagtatcg
     1681 cgaagattcg gattgccatt aacttttcct taatgcccaa cggccaaggt aagccgcgcc
     1741 gcgaagcggc gtcggcttga acgaattgtt agacattatt tgccgactac cttggtgatc
     1801 tcgcctttca cgtagtgaac aaattcttcc aactgatctg cgcgcgaggc caagcgatct
     1861 tcttcttgtc caagataagc ctgtctagct tcaagtaaga cgggctgata ctgggcaggt
     1921 aggcgtttta ttgcccagtc ggcagcgaca tccttcggcg cgattttgcc ggttattgcg
     1981 ctgtaccaaa tgcgggacaa cgtaagcact acatttcgct catcgccagc ccagtcgggc
     2041 ggcgagttcc atagcgttaa ggtttcattt agcgcctcaa atagatcctg ttcaggaacc
     2101 ggatcaaaga gttcctccgc cgctggacct accaaggcaa cgctatgttc tcttgctttt
     2161 gtcagcaaga tagccagatc aatgtcgatc atggctggct cgaagatacc cgcaagaatg
     2221 tcattgcgct gccattctcc aaattgcagc tcgcgcttag ccggataacg ccacgggatg
     2281 atgtcgtcat gcacgacaag ggtgacttct atagcgcgga gcgtctcgct ctcgccaggg
     2341 aaagccgaag cctccataag atcattgagc aatgctcgcc gcgtcgtttc atcaagcttt
     2401 acggccacag taaccaacaa atcaatatcg ctgtatggct tcaggccgcc atccactgcg
     2461 gagccgtaca aatgcacggc cagcaacgtt gattccagat ggcgctcaat gacgcttagc
     2521 acctctgata gttggttcga aatttcgatg gtcaccgctt ccctcatgat gtctaacacc
     2581 tgagttaagc cgcgccgcga agcggcgtcg gcttggacga attgttaggc cgcatatcgc
     2641 gacctgaaag cggcacgcaa gacctcaacc ttttccgccc cgagtgaggt gcatgcgagc
     2701 ctgtaggact ctatgtgctt tgtaggccag tccactggtg gtacttcatc ggcatagtaa
     2761 aagtaatccc agatgatcgc ctcccagctg ttacaacgga ctggccgccc ggcgatgacg
     2821 ccctcagccg cctctgggca cgagccctgc ggagcctccg cgatttcata cgcttcgtct
     2881 gcccaccaag caggttcgca gtcaagtaac tcatccccga tctccgctaa gaatccatag
     2941 tccaactcct ccatgacgcg cccgccgagc atttcaacta ttgcctcgag ctcgccgcgc
     3001 ctctcgccgg gaaacgtcag atcaatatca tcgtgcttgc gtgttacacg ccctagccgt
     3061 gcatcgatcg cccagccccc accgatccag agcggcagat ttcgctcatc tgccgcagct
     3121 agaattttgt gtatcaatgt gacctgcgtt gtgtccatgc ggcctaacct ttgttttagg
     3181 gcgactgccc tgctgcgtaa catcgttgct
//
LOCUS       DANLXK010000191         3159 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.193, whole genome shotgun sequence.
ACCESSION   DANLXK010000191 DANLXK010000000
VERSION     DANLXK010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..2438
                     /locus_tag="PXD88_002521"
     CDS             <1..2438
                     /locus_tag="PXD88_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL6282044.1"
                     /translation="GGVVITADLEFENLLRDTQKVDKAMDDIGKSTLKAEKGLKGLET
                     QATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQMGSNASTVIAQQGSQILSIF
                     GPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAAQKNLSEVVTQTESGVSALSA
                     KIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKAFEQFDGFFGSFTNSSQSIRN
                     AIDELKRYESKGKDVGAVIKELGGTYGGAIAEVNALDSVTSEMSKTLGITQSEALGLI
                     KLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNKLTRTINDNSVSALDAETSVR
                     LLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKAATIGKTERETAKYAATLLAT
                     TDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTADAKAAREAEAAAKKSAQAKK
                     QVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGAAATKEQREEAEKLAQSIYGA
                     TAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILYPQKIMEAEAARAAIEEQYRQ
                     QRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGLLNGTMSVRDAFASIANTILN
                     SVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKALAASFAPAASMVSLATQGANA
                     IPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGENNQPEIFKASNGMQYMIPGQ
                     SGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASANQAAVAKALSNQIKASVRLE
                     LQSQMRAGGVLAR"
     gene            2442..2771
                     /locus_tag="PXD88_002522"
     CDS             2442..2771
                     /locus_tag="PXD88_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282045.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            2771..>3159
                     /locus_tag="PXD88_002523"
     CDS             2771..>3159
                     /locus_tag="PXD88_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6282046.1"
                     /translation="MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEI
                     FRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVE
                     DFGQPVEAKVSSEETVDGNIQMTVELL"
BASE COUNT         1065 a          635 c          752 g          707 t
ORIGIN      
        1 ttggcggagt tgtaattacc gcagatctag aatttgaaaa tctgctaaga gatactcaaa
       61 aagttgataa agcgatggat gacatcggaa aatcaacatt aaaagcagaa aaagggctga
      121 aagggctaga aacgcaggca accaaaacgg cgatagcagt aaatcaagcc acaaacaaaa
      181 tgaaaaatat ccgtggagta gcaggtcaac ttggttatca aattcaagac atctcaataa
      241 tgcttcaaat gggttctaac gcttcaaccg ttattgctca gcaagggtcg caaatcttaa
      301 gtattttcgg tccaatggga gctgttgcag gggcgatctt agctattagt ggtgctattg
      361 gtggggcgtt actccctagt ttgtttgatt caactgatgc aactgagctt ttggcagcag
      421 ctcaaaaaaa tctcagcgaa gtagttactc aaacggaaag tggtgtttcc gccctttctg
      481 cgaaaatcat taaattagca aaagtaagcg aagatgcagc aaaagcaaaa attgcagtag
      541 ctatgagtga tgcaaaaata gctattaagg cagcagggga ttcatcacaa aaggcatttg
      601 agcaatttga cggctttttt ggatcgttta caaattcaag tcaaagtatt cggaacgcaa
      661 ttgacgaatt aaaacgctat gaatcaaaag gtaaagatgt tggtgccgta ataaaagaac
      721 ttggaggcac atatggtggt gcaattgccg aagttaatgc gctggattct gtgacaagcg
      781 aaatgtctaa aacgcttggt attactcaat ctgaggctct tggtttgata aaactgttgg
      841 ctcaattaga gcaagacaaa agccctgata atattaaatt actcgcgata gctttatctg
      901 acttaagcga taaaaatggg tgggcgaacg aagagctaaa taagctaacc agaacgataa
      961 acgataattc agtatctgct ttagatgccg aaacatcagt aagactctta gagtctgcta
     1021 taaaagactt gcaaaatgca atccaaaact cccaaggtgc attggatggc aatgtagcaa
     1081 aaatgaatca acttgcagat gcggcagaaa gaaaagctgc aacgataggc aagactgagc
     1141 gtgaaactgc taaatatgca gctacgctat tagctacaac cgatgaagct aaaaaaaatc
     1201 ttgattccac attaagtagg attgacgcat catacgatca aatcgaagcc tatcaagccg
     1261 aacaaaaagc cttacaagat aaaaagaccg cagatgcaaa agctgccaga gaagctgaag
     1321 cggctgcaaa aaaatccgct caagccaaga agcaagttgt cgaacagttg cgacaaatgg
     1381 ctacacagta cgagattgct gttttgaggc aaaagggaat gcatctcgaa gccgtaaaat
     1441 tagaagctgg tatgcgttta ggagctgcgg caacaaaaga gcaacgagaa gaagctgaaa
     1501 aactagcaca aagtatttat ggagcaaccg cagcaagtca gaactttaac gctatacaag
     1561 cccaagcatc tcctgttact gcattagacc aacgacatca acaacagcta gctcagatcg
     1621 aagaatataa aatcttgtat ccacaaaaaa taatggaagc agaagctgcg agagctgcaa
     1681 tcgaagaaca ataccgccag caacgaatgg aagctcaatg ggaggagtgg aagcaagcga
     1741 gcgacggggc gagaatgttt ggtgatgcgg ttgatgctgt tggttcaagt gcaacaagca
     1801 caattacggg gctactaaat ggcacaatgt ccgtgcgtga tgctttcgca tcaattgcaa
     1861 atacgatctt aaatagtgta gtacaaagcc ttgtcgaaat gggtatggct caagttaagc
     1921 aaatgattat ggggcaaact gctgccaagg cttctatggc ggcgcaaatg gtgcaagcta
     1981 aagcgttagc tgcttcattt gcacccgcgg cctctatggt ttctcttgcc acacaggggg
     2041 cgaatgctat tcccgctcaa gctgcgatca cgtcaactat gagtatggct caagtcgccg
     2101 cggtgacagg tcgtaaactt ggcggccctg tatcagctag acagatgtat cgtgtcggcg
     2161 agaacaatca gcccgaaatc ttcaaagcga gcaatgggat gcaatatatg atccccggtc
     2221 aaagcggtcg tgtattcagc aacaagcagt cgcaaggtca aggtggaggc gaaagcaaaa
     2281 cagtagctgt catcgtaaat caaaccaatc actttagcag cgatgaagcc agtgcaaatc
     2341 aagcggctgt tgcaaaagca ttgagcaatc aaatcaaggc ttccgtgaga ttggaattgc
     2401 agtcacaaat gcgagctggt ggagttctag cgaggtaatc aatgcaaaca tttaatttca
     2461 aggttgagca agactacact gttcaaaatg agcccagtgt cgtcatacta aaatttgccg
     2521 atggttacga gcaaaccgct cccaaagggt taaaccacaa tctgaaaaaa taccaaggca
     2581 ttaccgtaaa agcgaacaaa gcagaagcgg tgaagattca gcaatttctc aatgctcacg
     2641 gtgggtataa gaaattcaac tggcgcgata gaacaagcga tgagacggta acggttcgtt
     2701 gcagaagctg gagctccact aaattaggtg cagtcattga gtttacactt aatttcgatg
     2761 aggtgattta atgccaaaag ccccccccaa aaaaatggca tcagagttga taaaactcga
     2821 acaagatgcc ctgattgagc tgtgggagat agatctcact cacatctact ctagctcaaa
     2881 cccaaatcag cgcggagaga tattccgctt tcacaatggc gtgagccaaa cacaacagaa
     2941 catctggtgg caaggcaatg aataccaagc atacccgatt gccgccgatg gttttgagat
     3001 ttcgggtcaa ggaccgtcaa atcgtccaac actcactgtc tctaacctgt acggtgttgt
     3061 cacggtatta gtagaagatt tcgggcaacc cgtagaggcg aaagtcagca gtgaagagac
     3121 tgtagatggc aatatccaaa tgacggtgga actgctgaa
//
LOCUS       DANLXK010000192         3136 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.194, whole genome shotgun sequence.
ACCESSION   DANLXK010000192 DANLXK010000000
VERSION     DANLXK010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..521)
                     /gene="pdxT"
                     /locus_tag="PXD88_002524"
     CDS             complement(<1..521)
                     /gene="pdxT"
                     /locus_tag="PXD88_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL6282047.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVN"
     gene            complement(521..1393)
                     /gene="pdxS"
                     /locus_tag="PXD88_002525"
     CDS             complement(521..1393)
                     /gene="pdxS"
                     /locus_tag="PXD88_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL6282048.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            1604..3007
                     /locus_tag="PXD88_002526"
     CDS             1604..3007
                     /locus_tag="PXD88_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL6282049.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
BASE COUNT          973 a          625 c          578 g          960 t
ORIGIN      
        1 ttattcactt cgggatggaa ggatatacct atctgatttt ggtattttac tccaacaatc
       61 ttaccgctta tcttggctaa aatttctaca tcttttccag tgctttctat ataaggcgca
      121 cgaatgaatg tgagaggaat tttaccgaga tatttaactt cttcttctac taaaaacgag
      181 cctaattgcc ttccgtaagc attacgtttc actgttacag gcaaagtagc caaatgtttt
      241 ttatcgtcgt ttaccaaatt ttccgcaagc aaaattaaac ccgcacaagt tccaagcgtt
      301 ggcaagccat ttaaaatttt ttgacgaagc ggctcaagca agcctaattc acgtaataat
      361 ttaccttgaa cagtcgattc gccaccaggt aaaatcagac catcaaaatc ttggtttaaa
      421 tcagcaagtt gacgaatttc catactttca acccctagtt gctggagttt atcagtatgc
      481 tcgctaaatg caccttgcag agcaagaata gcaattttca ttagacacct cttgctgcca
      541 ttagcaattc aatctcttgc tcattaattc ctaccattgc ttcacctaaa tcttcagaaa
      601 gctccgcaag taatttagga tcgttgtagt tggtaacagc ttgtacaatg gcccgcgctc
      661 gtttagcagg atcgcctgac ttgaaaatac ctgagccaac gaagactcct tctgcaccta
      721 actgcatcat caatgcagca tcggcagggg ttgcaacacc tccagcagca aaggtgacaa
      781 caggcaattt ttggtactga tgtacatatt gtactaaatc aaatggtact tggagctctt
      841 tagctacgtg ataaagttca tctgtggtat gtgaaaccaa gcgggcaatt tcttgtttca
      901 ttttgcgaag atgatgtact gcttgcacca cattgcctgt tcctggctcg cccttactac
      961 ggatcatagc agcgccttca ttaatacgac gtagggcttc gcctaaattt tttgctccac
     1021 atacaaatgg cacttcaaat ttacgcttgt taatgtggaa ggtatcatct gcaggagaaa
     1081 gcacctcact ttcgtcaata tagtcaattt cgatcgcttg caggatttgt gcttctgtaa
     1141 cgtgtccaat acgtactttc gccattacag gaatggatac cgctgcttgg atactcttta
     1201 tcatcttggg atcactcata cgagaaacgc caccagctgc acgaatatct gcaggaattc
     1261 tctctagtgc cattactgca caagctccag cttcttccgc aatgcaggct tgctcagggg
     1321 tagttacatc cataattaca ccgcctttta acatttgagc aagttgtctg tttaaatcat
     1381 agcgattagt cattgtactt tttccttcta attgttgaat aattgaactt ttcgtagttt
     1441 cgattagctc ggcattaagt ttatttttat attcgctgga tgcgagtgtt catctaccaa
     1501 tttaaataca ctcagccaat ttgagtgagg aaacagcatg tattgtaatt taatctgaac
     1561 tgtttaaaat gaccatttta tgtttttctt atcatgtcag attatgctta cctacacttt
     1621 taacacacaa gaaggcaccg ctctctatga gcaactttac cgttttctaa aaaacgacat
     1681 tgaaagcaac atacttatag caggggataa actgccgtct aaacgggctt ttgcaaagca
     1741 tttaggcatt tcagtaatga cagtggaaac agcttaccaa cagttagtag cagaaggtta
     1801 tgtgaatact cagcctaaaa aaggcttttt tgtgaatgct ttaaatttac cagaaaaaaa
     1861 ggaagccata tcagttcagc tacaaaaaat cagttcagaa cagtatgaga aaaataaaaa
     1921 atggcaggca gatttaacta atcgacagac tttagcagaa aattttccgt tttcggtttg
     1981 gacaaaatta gtacgcgaag tgctgaaaac acaccaaagt gagctaatgg agcgtgctga
     2041 gagtgggggc gtatggacat taaaatttgc gatagccaat catcttcgag cctttagagg
     2101 aatgatcgtt aatccaacac agattattat tggagcgggt acggagtatc tttacggttt
     2161 gctcattcag cttctaggct tagataaaca ttatgcacta actgagccca gttacgataa
     2221 attgcgcaga atttatcaca gttatcgctt atcaacagcc acagtatcga tgccattttc
     2281 aatcgatgag ttaaattcaa agaatgtgga cgtgatacat acctcgccat cacaccattt
     2341 tccgacagga cacgtaatgc cgattgccaa acgttatgag ttgttagctt gggttgcaca
     2401 aaaagctgaa agatatattg tagaagacga ctacgacagc gaatttcgtt ttgtaggaca
     2461 accaattcct gcattgaaat ctattgatat gctcgggcga gttatctata tgaatacttt
     2521 ttctaaaacg ctctcttcaa ctgtacgaat tgcctatatg gttttgccac cagaattact
     2581 gaatcgtttt cagcaggaat tagggtttta tgcttctacc gtttccaatt ttgagcaata
     2641 tattttggca gaatttattc aacaaggcta ttttgaaaag catatcaatc gaatgcgagc
     2701 gtattatcaa aaaaagaggg ataaattact aaaagctttc aagcaaggca atttagcaga
     2761 aaagattgca ataaaagaag aacattcagg cttgcatttc attgtacagc taaacacaac
     2821 attaacagaa aggcaaattt tgcaggcagc agaagaacaa ggtataaaat ttgtcgcatt
     2881 gtctgcttat tatcaagata aatctcaaat tcagcaaaat gcttttataa ttgggtactc
     2941 taatttaaaa gatgatcaga ttaattatgt agcagagagc ctgaaaaaaa ttttagacaa
     3001 cgaatagcaa gtatcaaaac tgctttaatt tttagcaaat tgccttaaaa acacgcaagt
     3061 ggtaattatt ttagtgattt ttgcaaaaaa ttaccaaatt ctccttgcaa ggcattttgt
     3121 tttgcgtata atgcat
//
LOCUS       DANLXK010000193         3132 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.195, whole genome shotgun sequence.
ACCESSION   DANLXK010000193 DANLXK010000000
VERSION     DANLXK010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3132
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXD88_002527"
     CDS             complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXD88_002527"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL6282050.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(1976..3073)
                     /locus_tag="PXD88_002528"
     CDS             complement(1976..3073)
                     /locus_tag="PXD88_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6282051.1"
                     /translation="MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFV
                     SAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQ
                     IQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAK
                     LYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDI
                     EHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHR
                     THQGKMCCGRTPMETLVDGKRIWAEKNLSSN"
BASE COUNT          876 a          709 c          603 g          944 t
ORIGIN      
        1 ttagcaactg ttttgtccac ttggcatagt ttttgacgga tcagcaacta ttttgtctac
       61 tatgcctttt tgttacttcc agtatttttt cttcgaggtt tgcccgatcc ccggattaaa
      121 gctgttggtt ggatcaagct gccggtagaa tttgcgtaag gtcggttttg cttcgtaaag
      181 atgaccgaca ttatgctccg cagggtattg tgccccacgt ttatccagta attctaacat
      241 ctgatgttcc aacgccaaac aatctacacc ttttttcaca atatagtctt gatggaaaac
      301 atggcacata aaatgcccat aataaagttt gtgcgtgatt tgactctcta tttccggcgg
      361 tagcacttca aaccacgctt tatcatttcg gcgaagggca atatctaaag caacaatatc
      421 ttccacctct ttatcgtgaa tggctcgata gcgaatcgct gccgaagcaa cggcaaaacg
      481 atgtaacatt gccgcttggc tttcagtcgg attacactcc aaataaccgc ctttttgtgt
      541 atcagcaaaa taacgggcaa gatagtctct tgcttcttga acgccttttc cacccatttt
      601 gataattaag tgatgttcat actggttacg gtagtctcga agactttccg gcaaatgttg
      661 cggtaacatt tttgagattg cctgtaatat tttatcactg agatttgccg gtaaaaaggt
      721 gagtttcttc gccattctgt ccacttttgc tttaagtgaa aagagttgtg gtaagcggtg
      781 tgtaccgagt tttttaatca cccaaaaagt atctttaccg taatcagcgg caatatcaaa
      841 ggcatcacga tgaatatatt caccggaaat cggcaatacc tcaaagttgg ctaacatata
      901 gcgacgaata tcgtttaatg tgtccgtatg atttgtcccg atataaaaaa cagccgtgtc
      961 tttttcaagc ggaaaggtat ctaatcgcac cgcaaacacc gctaactttc ctgcactacc
     1021 ggcagcctcg tagtggcggg caggatcggc attaaaacgg gcaggggagt cttcatcaat
     1081 ttggcggacg tgattacaat aggcgtgatc gtgtcctttt ccgcacgctt gctgaatatc
     1141 cttacgctga taacgttggg cttgcagatt ttctaaaatt tcttccggcg tatcacctaa
     1201 atcaatacct aaatggtttt ttaattccag cgtgccgtct tcatttaact gggcaaacag
     1261 tgccatttca gtataagccg gcccacgttg cactaatgca ccccctgaat tattacaaat
     1321 accaccgata accgaagccc cgatacagga cgatccgatc accgaatgcg gttcacgtcc
     1381 gtgcgttttc agcaacaatt ccagctcatt taatgtcgag cccggtaagc aaacgacttg
     1441 attggcattg ttaattaact gaatgccgtt cattcgcatt gtgttaatga tcacaatatc
     1501 ccgatcataa tcgttgccgc ttggtgttga accaccggtt aatccggtat tggccgcttg
     1561 tgagataaca atgacatcgg cggcgacaca ggcttttaat acgttccagt attctaataa
     1621 cgttgtaggt tttaccactg caatcgcact acccgtgcca aagcgatacc cgctacgata
     1681 ggcttccgtc ttagtcgggt cagtgatgat ataagactgc ccgacaattt cagtaagctg
     1741 agaaatcagt gaattatttg acattatgct tccctcaaag gtagaaatag atagggcagt
     1801 atagcaataa acaaaagaga gcaaagcaga atgttacaaa attgtgaact actgcacaga
     1861 ataaatgaag aaatgaagta aaagaaagcg agctaaaaga gcgtcgcccg ctttatttgt
     1921 agaaaatcaa acctaatctg acagtccccc gtttaaaatt accgtgtctg tcagattaat
     1981 ttgagcttaa attcttttct gcccaaatgc gttttccatc aactaatgtc tccatcggtg
     2041 ttcttccaca gcacattttt ccttgatggg ttcgatgatg gttataatac attaaccatt
     2101 catctaagtc agcttgcaat gcctctaaat ccatataaat ccgttttctg aatgccactt
     2161 ggtagaactc ctgcaaaatc gttttgtgaa aacgctcaca gatgccgttt gtttgtggct
     2221 gtttcacttt ggtttttgtg tgctctatgt cattgatagc caaataaagc tcataatcgt
     2281 gattctcaac tttcccacaa tactcactgc ctcggtctgt cagcactcgt aacataggta
     2341 acctctggct ttcaaagaat ggtaatactt tgtcatttag catatcagca gcagtgatag
     2401 ccgtcttcat tgtatacagt tttgcaaatg ccactttact ataagtatca ataaacgttt
     2461 gctgataaat acgacccaca cctttaatat tgccgacata aaaggtatct tgtgacccta
     2521 aatagccggg gtgtgccgtt tcaatttcac cacaggcaat ctcatcttct ttcttccgct
     2581 ccaaggcttg tatctgtggc tcactcagaa taatgccttg ctctgccacc aatttttcga
     2641 gggcagttaa gcgttgctta aaattagcta agtgatgtct caaccaaatg gaacgtacac
     2701 cacctgcaga gacaaaaacc acctgcagag acaaaaacca cctgcagaga caaaaaccac
     2761 ctgcagagac aaaaatcccc tgtttacgca gttcattact cactcgaact tgaccaaaag
     2821 caggattatc taaagcgaat tgtacaaccg ctttttctgt ggattcatcc acacgatttt
     2881 taatgttggg aacacgtcga ttttgattta gtaatgcctc aacaccgcct tgttcgacag
     2941 cctgttgata gcgataaaaa gtatctcgac tcatccccat taccttacag gcttgtgaga
     3001 tattacccag ttcttctgct aaatttaata aaccggtctt gtgtttaata agtggattgc
     3061 tagaataaaa catgagagtt tcctttttgt ttagattgat ttttgacact catattctaa
     3121 acgggaaact ct
//
LOCUS       DANLXK010000194         3038 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.196, whole genome shotgun sequence.
ACCESSION   DANLXK010000194 DANLXK010000000
VERSION     DANLXK010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(25..2133)
                     /gene="gshAB"
                     /locus_tag="PXD88_002529"
     CDS             complement(25..2133)
                     /gene="gshAB"
                     /locus_tag="PXD88_002529"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL6282052.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKRKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPAKGQTVQLRANSNISTGGDSIDMTDQMH
                     ESYRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQ
                     GKSRRLTKAVIKMLFPEIGN"
     gene            2311..>3038
                     /locus_tag="PXD88_002530"
     CDS             2311..>3038
                     /locus_tag="PXD88_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6282053.1"
                     /translation="MWVRLGDICLKITDGTHHSPPNIDKSDFLYITAKNIKKDGLDLS
                     KISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNEPFSMLSSVALIKTSQ
                     EIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVPVPPLLEQQRIVQKIE
                     ELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQDPNDELASCLIERIK
                     AEKNRLIAEKKLKKPKSVSEIVMR"
BASE COUNT          900 a          626 c          612 g          900 t
ORIGIN      
        1 ttaaaagagg tatagagaga aaatttaatt gcctatctca ggaaacagca ttttgattac
       61 cgctttggtt aaacggcggg atttgccttg gtaagggaaa atgtgcatca tcatcattgg
      121 gttgaagttt gcctcaatga cgccccaaga gcttaaattt ggctcggcag gtttggtgag
      181 atcaggaatg atcaaatcca ccccacacac tttagccccc attgcctgag caattcccac
      241 tgcaatttgt ctatagcttt cgtgcatttg gtcggtcata tcaatcgaat cgccgccggt
      301 gctgatgttg gaattggcac gcagttgaac tgtttgacct ttcgccggta cacgcagtaa
      361 caccgcaagg gtttcatcgc ccagtacaaa gaagcggtat tcagtaccga ctaaatagtc
      421 ttccaccatc acctctttgt cttcacggaa cgcaatttca accgcttttg caaaatcttc
      481 tcgatttttg accgcttgtt ggaagatggt aatccctaaa ccatagttag tcgatttcgg
      541 cttaatcacc accgctttgc cttcaaatag cggataatgt gccacagcct gttcaaggtt
      601 ggtaaattca acgcttttcg gcacgttaaa gccggctttt gccaatactt ttttcgtcac
      661 cactttgttt tccataatca gcggtgaaat gtattgatct cggctggtca tattgccgtt
      721 tttcacatat tccaaatgat cgccaaattt tagggcgagg aattgatcgt tttcgtccag
      781 tacttccacc tcaatccctt gttggatcaa atcaaaaaac agggcttgag tggaaagttc
      841 catattatca aatgccgata acgcataaaa acgctcaaag gcttgtgcct tataggtttg
      901 agccaattta gcccccaatg ctttataact gccgacttcc tctattgcgg caattaaacg
      961 tccgttcagg gttttgcttg gatcagcaaa ttgagctaat ttttcccgca ccaaatctag
     1021 gctttcctga ccggcagata attcttcaag catcgctaaa agttgattta aaatggcttc
     1081 accttcggca cggaaagcgg tttctgttct tggatcttca agtgcgactt ggtaaagttt
     1141 ccgtttgccg atttcgacct ctttttgacc gcttgtttcc tccagccaaa gcataccgag
     1201 taagaaataa tggataaatt tggcatcatt cagctcaatg ccgtaagggg cgaaagggtt
     1261 taaatcaaat aaacggaatt cggcgtattt cacaccgttt tccaatagct cacgggcttt
     1321 tttgccccct cgtaaacgca cattggaata gaattctttt tcggcaatta ataatccgtt
     1381 ggcaacattg gcttcaaggc tttcaacata gctttctaag ctgtcgtgat taaccaccac
     1441 tttttccgaa ttcacataac cataagggct tgaacgcaag ctgcggacaa gttgccctct
     1501 cgcaagcggt gatttttcat aaaaatattg cgattccacc gtaggcgtgg cagccaataa
     1561 atagagcaaa atccattgat aacgcaaaaa gttattagct aacttcatat aaagtgcgtt
     1621 ttggaaggct ttcagctcgc tatattccgt ttgtaaagca aaggcttttt cgacaaattc
     1681 cgttgaaagt tgaaaattat aatgcacgcc gcttaccatt tgcttatatt tcccatagtt
     1741 tttggaaagg tgttggcgat attgcacatc ttcagggttg tcaaattgtg cttcttgaat
     1801 ttgctcttcc ggcggcaagc ctgccggcat actgagaggg aagatatatt cctcctctgg
     1861 caacgaacgc aataccactt cgtgaatagc agagagccaa cgaaaactgt cttctaattt
     1921 agcattcggg ggagtgatta actctagctg actttcggca aaatcggttt gaatataagg
     1981 gtggtaagag cgattaccga atacggcagg gtggggagta gtaacgatat tgccgttgcg
     2041 atcaacccgt tggctctctt tctcaagccc aaaattccct tgttgaaaca gcaatgctaa
     2101 atgattttct cggataagtt tttgtagttt catcatctat cctttgtagt caaaaaaatg
     2161 tatcggcaca ataacacaaa tgaaagactt agtgaaatag tgggttttag tttattggaa
     2221 tgaagtagat gatttggtta taacagaaat actgcttcgg ataaagcccc ttataccatt
     2281 gaaccacctt ttgagattcc tgagagttgg gtgtgggtga ggttggggga tatatgccta
     2341 aaaattacag atggaactca tcattctccc ccaaatatcg ataagagtga ttttctttat
     2401 attacagcta aaaatataaa gaaagatgga ttagatttat caaaaattag ctatgtaaca
     2461 aaagaaattc ataatgaaat tttcagccgt tgtaatcctg aaaagggaga tattctatat
     2521 attaaagatg gagccacaac tggagtaagt attataaata ctcttaatga gccatttagt
     2581 atgttatcca gtgttgcctt aattaagacc tcacaagaaa tagataatga gtacttaaat
     2641 tatgtaatga atagtcatta tttttataac atttctattg gaagtatgtc tggaacaggt
     2701 attccaagaa taacattaac taaattagaa tcttatttag tcccagttcc gccactccta
     2761 gaacaacagc gcattgtgca aaaaatcgag gaattattac cgcttgttga acgctacgag
     2821 caaaccgaac agcaactcac taaactcaac aatacattcc ccgaacagct gaaaaaatcg
     2881 gtgttacacg cagctattca gggtaaatta accgagcaag atccgaatga tgaactggca
     2941 tcttgcctga ttgagcggat aaaagcggag aaaaatcgtc ttattgccga gaaaaaactc
     3001 aaaaaaccaa aaagtgtttc agagattgta atgcgtga
//
LOCUS       DANLXK010000195         3006 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.197, whole genome shotgun sequence.
ACCESSION   DANLXK010000195 DANLXK010000000
VERSION     DANLXK010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            184..1302
                     /locus_tag="PXD88_002531"
     CDS             184..1302
                     /locus_tag="PXD88_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL6282054.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKDAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYEYSGKSTNKAIGVGMRVYW"
     gene            complement(1455..2819)
                     /gene="glmU"
                     /locus_tag="PXD88_002532"
     CDS             complement(1455..2819)
                     /gene="glmU"
                     /locus_tag="PXD88_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL6282055.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          864 a          540 c          588 g         1014 t
ORIGIN      
        1 aaagaaaaaa tgccgtcttt gttttggggt ttgaactatt gacattgagt tttctttttg
       61 caattattct ggcgaaaaca atgttaggcg ttttgctgat acattgtatc ttggataatt
      121 actcttacac cttaatgagg gtaattactt atcatataac atataaaatc taaggtgaaa
      181 attatgaaaa aaacattagt tgcattagca gtaaccgcgt tcgcagcgtc agcatcagca
      241 accaccgttt acgatgcaga aggttcaaaa gtagattttg atggttcttt acgtattgtt
      301 cttgatagaa caaattctaa agagctagac aatcataatg ttgttaaaac taaaaaagat
      361 gcacacacag gaatccgtaa cactggttca cgttttggtg taagagtaaa acatgattta
      421 gctcaagatt tctatgcatt aggtcgtgtt gagttccgtt ttaacaaaaa taccagtgat
      481 gatggttttg gtgatttata tactaaacgt gcttatgttg gtttaggtag taagcaatat
      541 ggtgaattaa cttttggtcg tcaagtaacg attgctgatg atttaagtca atcagtagat
      601 tacaactacg gtattaatcc aaaaggtgat tatattcaaa ccgatggtaa ccaagttatt
      661 cgttataact accgtggtgt tgaaaactta catgtaagtg caaactataa ctttgcacaa
      721 gatcgtaaag atggtaaagt attagcaaat aaacttcaaa atgcatacgg cattggtgca
      781 ttatacactg tagataactg ggatttacgt gcagcttatg gtcatacaaa ctacaaaaca
      841 gctactgata gcactaagca ccgtaaagat ggtgtattag gttctgttgg ttataaattt
      901 ggtgacttaa aattaagtgt tgatacaggt tattctcgtg agaagggttt agctgttacg
      961 gatgataatg gtgtaactac attctataat ggtgttaaat caaacgcttt ctatgtatct
     1021 ccaaactttg aatatcaagt agtgcctgca tctaaagtat atggtaacta cttatatgag
     1081 cgtgtgaaat ctaaatcaaa tggttctaca tatgctgctg gtaaagaaaa aactcatggt
     1141 ttcttacttg gtgttgatta ccaattccat aaacaagtag ttgcttttgt tgagggttct
     1201 tatactcgta ctaaagacta tgataaagta actaatggtt atgaatactc aggcaaatca
     1261 actaacaaag ctatcggtgt tggtatgcgt gtatactggt aatcaattga ttttctaaat
     1321 tgataaaccc ctaacaatat ttattgttag gggttttgtt ttaaatatat tgttcattat
     1381 cctttttaaa gtgtatggct ttgctgttat tggcaaagcc aatttttaaa tataataact
     1441 tttgaccact ggcactattt ctttttagtc gggcgttgcc agccttgaat atggcgttgt
     1501 ggtacacggc taattaccag ttcattttcc gcaatgtctt tagtgactgt tgcaccggca
     1561 ccaatggttg aaccgctggc aatcgtgacc ggggcaatga gttggctgtc tgagccgaca
     1621 aatacgttat cgccaataat ggttttgaat ttattcgcac catcatagtt acaagtgatt
     1681 acacctgctc cgatgttaca ttctttgccg atttccgcat cgcctacata agtgagatga
     1741 tttacttttg aacctttgcc gatggtagct tttttgattt ccacaaagtt accgatatgg
     1801 gtttcttccg ctaattctgc ccccgggcgt aagcgagaga atggaccgat agcggatttt
     1861 gccccgacaa tcgaatcttc aatcacagaa taaggtttaa tttcaacatt atcgccaatt
     1921 tcgcagtttt tcagtacgca gcctgcacca atttttacat tgttaccgag tttgatttca
     1981 ccttctagaa tgacattcac atcgatctga acatcttttc cgtgggtgac agtgccacga
     2041 agatcaaaac ggcttgggtc gataatagtt acaccagcca ataacagttt ttccgcctca
     2101 cgtttttggt agaaccgttc aagtgcagca agttgcaaac ggttgtttgc cccttctact
     2161 tccataaatt cagttgcctg aaccgcttgt actttaaagc cttcttggtt tgccattgcg
     2221 atcacatcag tgatgtaata ttcaccttga gcattgttgt tatttaggtt tttcaaccat
     2281 tttttgaagc tcgcaccgct tgctaccatc acgccggtat tcacttcttt gactttaagc
     2341 tgtgcttcat tggcatcttt ttgctcaaca atcgctacca cagaaccatt ttcacgaata
     2401 attcgtccgt agcctgtcgg gttttccaat tcaacggtta gtaatgcaat accattttcc
     2461 ggtttggctg cgattaaacg ctctaaagtg gcttttgtga ttaggggggc atcaccataa
     2521 agcattacaa tgttttcatc atcagcgaaa aaaggagctg cttgttgcat tgcatgtcct
     2581 gtgcctaatt gttcggcttg gaatacccag tttacaggct cttcgcttaa acgtgctttt
     2641 aacagatcgg caccgtgtcc gtaaattaaa tgaatttgct gggcatctag ctgtttggca
     2701 gtatcaataa cgtgttttac catgggttta ccggcaactg ggtgtaacac tttgggtaaa
     2761 tctgaataca tacgagtgcc tttaccggca gctaaaataa caacgctcag ttgagtcata
     2821 tagaatcctt atttgactaa atagatgaag gcttatagta acgtgtaaat tgctataagt
     2881 gatatttttg taatatttta acctttttat aagtggattt catcgacaag caaaagaaat
     2941 ttgtctgttt gttatctttt tctattatgt cgattcttat cttgtggaaa actggtataa
     3001 ataggt
//
LOCUS       DANLXK010000196         3000 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.198, whole genome shotgun sequence.
ACCESSION   DANLXK010000196 DANLXK010000000
VERSION     DANLXK010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            120..2159
                     /gene="malQ"
                     /locus_tag="PXD88_002533"
     CDS             120..2159
                     /gene="malQ"
                     /locus_tag="PXD88_002533"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL6282056.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAF
                     QQSEQAQQWFHTKETQQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQT
                     AFDAFIEQAGEPLKIQATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQ
                     ATQIRFYMWLQFVANQQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2227..2958)
                     /locus_tag="PXD88_002534"
     CDS             complement(2227..2958)
                     /locus_tag="PXD88_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL6282057.1"
                     /translation="MGCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTW
                     IATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQ
                     FIGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGS
                     ALAILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLV
                     MYVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT          964 a          633 c          578 g          825 t
ORIGIN      
        1 ttaaattaaa tttttttaac atcatatcac aaagacaaac ctgttgccta ctcttcttac
       61 tcatattaat cttcacaaga tcgttatttt aacaaataca gtaaaggaaa aaagtcataa
      121 tgtcaaacaa acaaaataca gctcactatt tttactcccc aaatattaaa gagtatgcca
      181 gcccctctgc ttttgagaaa atagagcggc ttttaaatac cgataacgat ttgcaaaaaa
      241 ataatcaaat tctaccgctt gttaaagtga ttactcagcc aaatgccgag caacaagcgg
      301 tcgaaatttc gctgaatttt acaaatgtag caaagtggca aattgtgctt gaaaatggtg
      361 aggttcggaa cggtgaaatt aaggcagagc aatcagttct aaccctgcct gccgatttgc
      421 ctttaggcta tcatcagctt tctatttcaa ctgaaaatga tgaagaatct tgctcgctga
      481 ttgtaacacc gccgaaagct ttccagccta agccattgga agaaaggaaa aagctctggg
      541 gtgcattttt acagctttat actttgcgtt ccgataacaa ctggggaatt ggcgattttg
      601 gcgatctcaa acaattcctt gccaacattt ctgattatgg tgcagatttt gtgggcttaa
      661 accctattca cgccctcttt ccggcagatc ctgatgcggc aagcccttac agcccgtcct
      721 ttcgactttg gcaaaatatt atttatattg atgtttcagc agtagaagcc tttcaacaat
      781 ctgaacaggc tcaacaatgg tttcacacca aagaaactca acagcaactt gccgaattgc
      841 gagccaaaga ttttgtcgat tacagccaag tagcgcaact gaaattaaag gctctgcagt
      901 ttgcttttga gcatttttca cagtcatctc aacaacaatc gcaaacagcg ttcgatgcct
      961 ttattgagca agcaggcgag ccattaaaaa tccaagcaac gttcgatgct ttgcaccact
     1021 ggatttcatc tgaatttggc gaaaaaggcg gctggacaaa ctgggcggag gaatatcaaa
     1081 gttactattc gcctaaagta gctgaatttc aaatatcgca ggcaacgcag atacgttttt
     1141 atatgtggtt gcaatttgtg gcaaaccagc aattagcaga atgcaaccgg tttgctcaat
     1201 cactttcaat gccgattggt ttttaccgcg atttagccgt tggtgttact caaagcggag
     1261 cggaaacttg ggcggataaa gccctatttg tgcaagaggc gtcaatcggt gcaccacctg
     1321 atatgcttgc cccgaacgga cagagctggg gactttcgcc aatgcacccg catattctac
     1381 aaagccgagg ttatcagccg tttattgatt tagtgcgtgc taatatgaaa cattgtgggg
     1441 cattgcgaat cgaccatatt ctcggcttcg cccgtatgtg gtgggtggcg aacggtgaat
     1501 cggcaaaaga agggatttat gtccgttatc cgctcgaaga tttgctctct attttggcat
     1561 tagaaagcca acgtcaccaa tgtttagtga ttgcagaggc acttggcatt gtgcctgaag
     1621 gcattttgga ctctctcgag caaaagggca tttttgccta caatgttttt tattttgaaa
     1681 aggcagaaaa cgcgtttaaa ccgctggaaa attatcctta ccaagcgatg acaactctaa
     1741 gcacccacga tttaccgact attcaaggct attggaaagg ctatgatttt gagctaggcg
     1801 aaaaatttga cacttaccca agcaaagccg tattgagaaa gctgaaagaa gagcgttcgt
     1861 acgaccgctt gaatatccgt aatgcggtgg aaaaagtgat agcactcgag ccaaatgaag
     1921 tgggagtaac aataaaattt acccaccaat tacaacgcta tgtggctcac actcacagtg
     1981 cattattcgg tacacagccc gaagattggc tcaatatgtt agagccggtg aacattccgg
     2041 gaaccagcac cgaataccct aactggagaa gaaaattatc cgcaaccacc gagcagattt
     2101 ttgcaaataa agatattcaa caactgctaa aagatataaa cgaaattcgt aaaggataat
     2161 aacaagcggt catttttagg taaattttta caaaaaatga ccgcttgtaa tttgtattta
     2221 ttcgctctat tgctgatgtt ttctgtgaag tttaatccag ttgtaataac cgtaaataga
     2281 gttacataaa tacatcacat acatcaccaa cagcggcaag ctggtttcgc cgttttggaa
     2341 gtacattgcc gtccataaag aaatggtcat aatattcacg ataatccaca atgcccattg
     2401 ctcacggtag cgaagtacca tcaaaatttg tgccacaatc gaaataacca ctgttgcacc
     2461 atctaatata gctaacgcac tgcctaaata tttaagcaat tcaatataaa gaaatgtgcc
     2521 gataatggtg gtaatggcga caatcaccca ctgttttgcg gttaaagctt tagcaattac
     2581 ctcttccaca ccagcattat ttaccgtgtt ttcgctggtc atatttttac gccagaaata
     2641 gaaaccgata aactgcaccg gcacatatac aagtaaattc agcatcattt caccatataa
     2701 ctgaaaggta taagagatat aagcataaag cgaaacggaa attaagccga atagatagtt
     2761 actgattttt cctttaccga caaataccac gcataaaata cctgttattg ccgcaatagt
     2821 tgcaatccaa gtatcgggtt gataaataaa aataccgatt tgaatcgcta aaaaaacaat
     2881 caaccaactt gcctcaaaag tagtccaacc actaaaaaac tcttgtttta acttagttga
     2941 aaaagatgaa cagcccatat ttcctccata taaagtgaag tattcttttc aaattctaag
//
LOCUS       DANLXK010000197         2971 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.199, whole genome shotgun sequence.
ACCESSION   DANLXK010000197 DANLXK010000000
VERSION     DANLXK010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            87..998
                     /locus_tag="PXD88_002535"
     CDS             87..998
                     /locus_tag="PXD88_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL6282058.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            1104..2870
                     /gene="aspS"
                     /locus_tag="PXD88_002536"
     CDS             1104..2870
                     /gene="aspS"
                     /locus_tag="PXD88_002536"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL6282059.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
BASE COUNT          834 a          609 c          665 g          863 t
ORIGIN      
        1 caaataactg tatataaaaa cagttttatt ttatgccctt attgttagaa tttcaagttt
       61 aaaaatagcg ataaaaagga taaaaaatgc tctacggttt agccattgtg ctgattccac
      121 tttttctcgg ttacttaata accctcaaaa accaccgcca tatggcaata gtaaacagag
      181 tggtcagcct ctgcctttac ttgattttat tagtgatggg gatttctctc ggacaaattg
      241 ataacattct caccgaactg ccacagattg gcggtacggc gtttagttta gtggtgattt
      301 tactcctttc aaacattatc ggcttggtga tttacgacaa attacaaccg atgaaaagag
      361 acaaagtcaa tcaagatcaa cttccctccc gcctgcattt gttgattgat tcctttaaat
      421 taatcggcat taccttatta ggcgggatca tcggctattt caccaaaggc gtggtggatt
      481 tccctctgca cgccagcacc tatgtgttag aagtgatgat tttcggggtg gggattcaac
      541 tgcgaaacag cggtattccc ctgcgtgaag tgttctttaa caagcggggg atttatacct
      601 cgattgtaat ggtggcaagt tccctgattg gtggcgtgat ttcggcattc accttagatt
      661 tatcccttgc taaaggctta acctttgcct ctgcattcgg ttggtattcc ctttcaagcg
      721 tattggtaaa cgatgcttgg ggcccgattt acggcagtat tgcctttttt aacgacatct
      781 cgcgtgaaat tttatgcctg tttttagtac cactgtttat gcgtcaattt ccgtccaccg
      841 cagtcggcat tggcggagcg acttcattag attgtatgct ccctattatt caaaaatcgg
      901 gcggtattca aattgtgccg ctggcaatca gcttcggttt tattgttaat ttagccgctc
      961 cattgttatt agccgttttt attgggctgg aaggataaat caccgcttgt ttgcttttat
     1021 ttatccatct tcgctgaatt ttccgctata atccttaagt tttccccgaa acttgggata
     1081 tttattttca aaaggataat tttatgatgc gttctcacta ctgcggtgca ttaaaccgct
     1141 cacaccttgg acaaacagtt accttaagcg gttgggttca tcgtgttcgt aaccttggtc
     1201 gttttatttt tatgcaaatt cgtgatcgtg aaggcattgt gcaggtgttt ttcgatgaga
     1261 aagatgaagc acttttcaag caagcatcgg ccttacgttc tgaggcgtgc gtgcaaattc
     1321 aaggtgaagt gattgcccgt gatgaatcgc aaatcaataa agagatggca accggtgaaa
     1381 ttgaagtgtt agtaaaaaat ttagtggtgt ataacaacgc tgaagtattg ccgttagact
     1441 tcaatcaaaa caataccgaa gaacagcgtt taaaataccg ctatttggat ttacgccgcc
     1501 ctgaaatggc agaaaagctc aaaacccgtg ctaaaatcac cagttttgtc cgccgtttta
     1561 tggacgataa cggtttctta gacattgaaa ccccgatgct gaccaaagct actcctgaag
     1621 gtgcgagaga ttacctcgtg ccaagccgtg tgcataaagg caaattctat gctctgccac
     1681 aatcacctca gctatttaaa cagttgctaa tgatgtcggg cttcgaccgt tattaccaaa
     1741 tcgtgaaatg tttccgtgat gaagatttgc gtgccgaccg ccagccggaa tttacccaaa
     1801 tagacgtgga aaccagcttt atgactgccg aagaagtgcg tgcattaatg gaagcgatga
     1861 tccacggctt atggaaagag accttaggcg ttgatctcgg taaattccca atgatgacgt
     1921 ggaatgaagc aatgacccgt ttcggttcag acaaaccgga tttgcgtaac ccactggaaa
     1981 tggttgatgt ggcagatatt ttaaaatcgg ttgatttcaa agtatttagc ggtccggcga
     2041 atgatccgaa agggcgtgta gtggcacttc gtgtgccaaa cggtgcagct ctaacccgta
     2101 aaaatattga tgactacacc caatttgtcg gcatttatgg ggcaaaaggc ttggcttggt
     2161 taaaagtgaa tgatatgaac acaggtttag aaggcattca aagcccggtt gcaaaattct
     2221 taaatgaaga agtgctaaaa gccttagtta aacgcttaaa cttgcaaaaa gacgacattg
     2281 tattcttcgg tgcggataac tggcacgttg cgactaacgc catcggtgcg ttacgcttaa
     2341 aagtggggaa cgatttaggc ttaaccgata ccacagcgtg gaaaccgtta tgggtgattg
     2401 atttcccaat gtttgaacgt gatgatgaag gcaacttatc ggcaatgcac cacccgttca
     2461 cttcaccgaa agaattatcg ccggaagaat tagtgcaaga tccggaaaat gcggtggcaa
     2521 acgcttacga tatggtaatt aacggctacg aagtgggcgg tggctcggta cgtattttca
     2581 gccagcagat gcaacaaacc gtgttcagca ttttaggcat taacgaagaa gagcaaaaag
     2641 agaaattcgg tttcttatta gatgcgttaa aattcggtac tccgccacac gcaggcttag
     2701 ccttcggttt agaccgctta acgatgttga ttacaggaac tgataacatt cgtgatgtca
     2761 tcgctttccc gaaaaccacc gctgcagcgt gtttaatgac agaagcacca agctatgcga
     2821 atccgaaagc gttggaagag ttagcaatcc gtacaattcc acaagagtaa tcggtagggg
     2881 cgaaacattt ttcgcccttt ttatttaaca agcggtcgaa aaagtgaaaa actttgcaaa
     2941 agtaataatc gcaaaattat tctctaaata a
//
LOCUS       DANLXK010000198         2923 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.200, whole genome shotgun sequence.
ACCESSION   DANLXK010000198 DANLXK010000000
VERSION     DANLXK010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            1..518
                     /locus_tag="PXD88_002537"
                     /pseudo
     CDS             1..518
                     /locus_tag="PXD88_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            529..1014
                     /locus_tag="PXD88_002538"
     CDS             529..1014
                     /locus_tag="PXD88_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL6282060.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(1052..1921)
                     /locus_tag="PXD88_002539"
     CDS             complement(1052..1921)
                     /locus_tag="PXD88_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL6282061.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            2051..2842
                     /locus_tag="PXD88_002540"
     CDS             2051..2842
                     /locus_tag="PXD88_002540"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL6282062.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
BASE COUNT          894 a          548 c          610 g          871 t
ORIGIN      
        1 tgatgaaagt aaacaagaaa aaatcaattc attcttgatt gttggtaata aattatatgt
       61 ggtgggtgaa ctgcacgatt atgaatttga gcatcagcaa gttgcggaac tgaataattt
      121 tctcaaaagc ctaattgcta ataaaatcaa atctgttgag gcaaacttcg aggttaagga
      181 atccaaaaaa gtggaaggta gttatagaat tattttagat gggaaatcac ttacagaaag
      241 tgaaagaagt acggtgatgg tttaattcag ctcaaaatcc atctattact tatcaggcgg
      301 aagggaactt ggtgaaatta gccaatagag aagagctttt gcaaaaattc cgatttaaac
      361 aagcgcttga ggcgaatgtg cgttattaca aaatgaaaag tggtcttcaa aatacggctg
      421 aaggagcgtt aagtattgta atgttgcctg ttgctgtagt agctgtttta ccattctata
      481 tgttttgggt tggtgcttgt gccacttacg gatgttaaat aactttttat gtattctcta
      541 tacctgaaaa ttttatcgga atgcgattgg tgttgtgatc caaaaacact ttctacctac
      601 cagcaagaat ggcttctgca cgaagggtca cttacccaaa aattgtatga tgtcgcaacc
      661 aatttcaacg tggaagtagt acaagaaaag tggattgcaa aaaacagtga aaaaacgacc
      721 gcttgtaatg aagatgtttg gtcgcgagaa gtgttactga aagatggtga aaaaaattgg
      781 atttttgccc aaactcttgt gccaagatca acaatcgaaa atatcgctca aaacgtgttg
      841 gaattgggca atcagccgat tggtttatgg ctattttctc aaaatcctac tcgcaccaaa
      901 ttagaatgga cacaaacaga gaacggttta ttcgctcggc gtggggtgta tgaaattaga
      961 gggtattctc tggaaattcg agagcttttt ttagaaacct ttccttattt ataaaaaaat
     1021 cggttggtaa tgacaccaac cgattttcat cttattttgc caagaactga taaattgcag
     1081 ccatatccac ttcgctcaag cctgaatcat tggcttgatt gtaggtttta gtggcttgct
     1141 caataagcgg gtaagatttg cctaatttcg caatttcttc gcttgccaaa ttaaaatctt
     1201 tggtcatatg tttcatcata aacgcaggcg gaaattcatt agcttggtac atcggcactt
     1261 ttgcttggaa gatcgggctg ttcataaacg agcctgaaat catttcgatt actttctctt
     1321 tcggaatgcc atattggtcg gcgaagttta acgcctcgcc ataggcttga atgaagatgc
     1381 ccagtagcga gttgatcatc aatttaatcc caccggcttt acccacttca ccataataga
     1441 aagtggtggt actaaaggca gcgaaaagcg gtttgagcaa ctcaacggtt tcttctttac
     1501 cggcagccag taccaatagt ttacctgctt ctgccacttt gcttgaaccg gaaaccggag
     1561 cttcaacaaa ttctgcaccg tgttgggcta gtagagcttc taccgcctgg ttttggcttg
     1621 gggaaatggt gctcatattc accactactt tgccgtttaa ttcagccaac acttcatcgc
     1681 ttaacacctg ttgcacggcg gcatagtctg caatcatcaa gaaaatcaca tcgtaggctt
     1741 tcaccaattc caacacagaa ggatataatg tgccgcctgc ttcaactacc ttttctgctt
     1801 ttgctgggtc gcggttgtaa acgcccacgt tcactccgct atttagcaaa tgttttgcca
     1861 tcggttcgcc catttgccct aaaccaatcc aaccgactgc ttgtgtatta atgtttttca
     1921 ttatttttct ccttactgaa taaagcaaat tgattattgc gattttccct catcaagtca
     1981 aatagagaga acttgaatat agcaatggaa aagagtagca ttttagcact tacttttttg
     2041 aacaatacca atgaaaccaa caattctttt atacgattcc ggaatgggcg gattgacgat
     2101 ttacgatgaa atccgaaaag tgttaccgca cgctcactat ttatattgct ttgataacgc
     2161 ttttttccca tattccgaga agtcggaagc agttttaatt gagcgagcgg tcaaaattgt
     2221 gcaaaaaatt gcagaaaaac aaccgcttga tatggttgtt gttgcttgta atacggcaag
     2281 cacagtggtt ctgccggcat tgcgtgagca ttttaatttt ccgatagtag gaactgtacc
     2341 ggcaattaaa ccggcagcgg caatttccga aactaaagtc atcggcttgc tcgccactaa
     2401 aggcacggtt gctcgccctt atgttgatga attgataaga aaatatgctc aggattgtac
     2461 ggtagaaaaa attggcacaa ccgatttggt tgaaattgtt gaagaaaaac aacgaagcgg
     2521 taaagtggat atgaaccgac tacaaaaagt ggtcgaggct tggcaaggta agccggaatt
     2581 ggatacggtt atactcggtt gtacccattt tcccttagtc aaagctgaat tacagcaatt
     2641 attgcccgat gtgaaatatt ttgttgatcc gggtgtaggt attgccaaac gggtgctaag
     2701 ccttttggaa gaacgcaaat ttcaacaaaa agccgatttt gaaaatcaag cattctgcac
     2761 taaacaaagt tctgcattta atatcaaaca agacgttatg cagaattggg gatttaataa
     2821 tctttcggtg attgatattt aaacaaaaca atctgttttg atgaaaaaag gttcagttga
     2881 gcaaaaactt taaaaaaggg cttgcactca attttaaaat ccc
//
LOCUS       DANLXK010000199         2812 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.201, whole genome shotgun sequence.
ACCESSION   DANLXK010000199 DANLXK010000000
VERSION     DANLXK010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            68..784
                     /locus_tag="PXD88_002541"
     CDS             68..784
                     /locus_tag="PXD88_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL6282063.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRNLKDKSGNAGRVYR
                     FYSGLNELKTSIVWQGRTYDPYPIEASGFERNSSGPSNRPTLTLSNLFGLITSIANQF
                     DECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLTSLTRETATFTLA
                     LPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKSTSDPKADKCSHCLNG
                     CELRGNQRNFGGFVSVNKLG"
     gene            788..1519
                     /locus_tag="PXD88_002542"
     CDS             788..1519
                     /locus_tag="PXD88_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL6282064.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEAQGELVAVVHSHPEPNGKPVLSTLDRKMQVQTGLDWWLVHNQKIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGDQMVVHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLAEKLDFDGILNDIAVNN"
     gene            1788..2417
                     /locus_tag="PXD88_002543"
     CDS             1788..2417
                     /locus_tag="PXD88_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6282065.1"
                     /translation="MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAA
                     FALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            2427..>2812
                     /locus_tag="PXD88_002544"
     CDS             2427..>2812
                     /locus_tag="PXD88_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282066.1"
                     /translation="MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLV
                     DGFKSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKK
                     NGAIVRTVTDERINRLRLTLGVRSLF"
BASE COUNT          862 a          553 c          663 g          734 t
ORIGIN      
        1 caacgctacc gtagaaatca gttaaatgat ttaagaacag gtggaacatt atctaaatag
       61 gtgaagtatg ccaattagta tttctaacca aatgaaacta gatcttgcca aacttgagca
      121 aaatgcaatg ctggacttgt acgaggttga tttgcgcaat ctcaaagata aaagtggtaa
      181 tgctggcaga gtttaccgct tttattctgg gctaaatgaa ctcaaaacaa gtatcgtctg
      241 gcaagggcgg acttacgatc cgtatcctat tgaggcaagt ggatttgaac gaaacagtag
      301 cggcccgagc aatcgcccga ctctcacgct atcaaatctg tttggtttaa ttaccagtat
      361 tgcgaatcag tttgacgaat gtatcggtgc gattgtccgc cggcatcagg tttatgctca
      421 atatttagat gccgtgaatt ttgccggggg taatgcgaaa gctgatccaa atcaggaaat
      481 aatcagtcat tttgtgattg agcagcttac cagcctcacc cgagaaacgg cgacctttac
      541 gctggcatta ccgattgaaa ccgataatgc caagatcccc agcagaatta ttatggcgga
      601 cacctgcact tggatttacc gctcggcgga atgtggctac accggcaagc agtattttga
      661 tgaaaaagac aaatcaacct cagacccaaa agcagataaa tgtagtcatt gccttaatgg
      721 ttgtgaatta agaggcaatc aacgcaattt tggcgggttt gtatcggtaa ataaattggg
      781 gtaatgaatg gaattggaac aacaaataat cgactacgcc ctccaacacg aaccgcacga
      841 aatgtgcggc tttgttgttt ttgacggcaa taaaaatcga tttatccctt gcgaaaacca
      901 agcggaagac aaagccaatt actttgaaat ctctgatctt gattacatca aagcagaagc
      961 acaaggcgag ctggtggcgg tagttcattc acaccctgag ccaaacggca agccggtact
     1021 ctctaccctt gatcgcaaaa tgcaagtaca gaccggttta gattggtggc tggtacataa
     1081 tcaaaaaatc cataaattca ggaatgtgcc gcatttaatc gggcgtgagt ttaaacacgg
     1141 tacaatggat tgttacacgc tctaccgtga tgcctatatg cttgccggtt acgagatgga
     1201 cgagttcgag cgacaagatg actggtggca taccgggcaa aatctctatt tggataatat
     1261 tcaagggcaa ggctttgagc gagtggaaac cccacaaatc ggcgatgtga ttttaatgca
     1321 agtaggtgct gatgtgccga accacgctgc catttacatt ggcgatcaga tggtagtcca
     1381 tcatagcccc aaccgattat ctaagcgtga tttatacgac ggctactggt tacgccatac
     1441 ccacagtatt tggcggcata aactggcgga gaagttagat tttgatggca tattgaatga
     1501 tattgctgta aataactaac aaaaaatgac cgcttgtaac aaaaacaaac cccgaagcgt
     1561 ttgcagcact tcggggtttt tcatatccac ttacctaact aagaggacat aaattaaatg
     1621 aatgataaac gatttacatt caaatttcta ggagttctta tggaagcaat aaatattacc
     1681 ccaaaagaaa tcagaaaaac aatgtggaca gccgcaataa ttctcttttt gtttgcgttc
     1741 atctggaaag cccctgaatt tatcactgct attcgttggt ggtaactatg attacagtta
     1801 aattttacgg acaccttaaa acattcggca cagattttaa aattttagtt aaagacatcg
     1861 ctgaggcaat tcgtgctctg tgttcacagc ttaaaggatt gcgtgaagcg ttgcgagacg
     1921 gtgtttataa agtccgtatc ggtaagcagt atttagaccc atcagccctt gaaaaagggc
     1981 ttttttattg cctgaagaaa gggcaaacca ttcattttac ccctgttgtc aaaggagcga
     2041 aaagcggtgg tatttttcaa gcggtgttag gtgtggcgtt aattggggct gcatttgcgt
     2101 taggtcctat cggcttagga ttggttggct ctgctacagc aatgacagtt ggagcaatgg
     2161 gggcatcaat gttactagga ggagtttccc aaatgctcac caaaatgcca aaagccccca
     2221 caatgggtaa tgaaacagaa aaagaaagct caacggcttt ttcaaattta aataacttgg
     2281 tggctcaagg caaacctgtg ccgttggctt atggtttgat tcgtaccggc tcgctggtga
     2341 tatcgcaggg agttgagacg atcaccatta aagaaaacca accggcaagc aacaagaaaa
     2401 ccggctttag aaaataaggg ataattatgc gtatttacgg agcaaaaggt ggtggcggca
     2461 gtagccatac cccgattgaa gcaccggaaa ccggtcgctc aaaacagatt gtgaatattg
     2521 tggaattgct gtgcgagggc gaaattgaag gcttggttga tggctttaaa tcgatttacc
     2581 tagacggcac gcagatccaa aacgatgacg gcacctataa ttttaataat gtgagcggtc
     2641 agctaaatgt cggtacgcaa gatcaagatg tgttggacgg ttacgatagc tcacagaatg
     2701 aagtgaatgt gggtgttgag attaagaaaa agaatggggc tattgtccgc accgtaactg
     2761 atgaacgaat taaccgcttg cgtttaacgt tgggagtaag gtcattattc ca
//
LOCUS       DANLXK010000200         2795 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.202, whole genome shotgun sequence.
ACCESSION   DANLXK010000200 DANLXK010000000
VERSION     DANLXK010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            47..1642
                     /locus_tag="PXD88_002545"
     CDS             47..1642
                     /locus_tag="PXD88_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL6282067.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(1729..2028)
                     /locus_tag="PXD88_002546"
     CDS             complement(1729..2028)
                     /locus_tag="PXD88_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282068.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(2015..2410)
                     /locus_tag="PXD88_002547"
     CDS             complement(2015..2410)
                     /locus_tag="PXD88_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL6282069.1"
                     /translation="MLDNIKSGFRNSLITLLEIAQVRGEMARIEINEQKNQLISVLIF
                     ILLAFVFLLVSFVSLLFGLDNYLLPEQKVKVFFSIAIIMFIAVTICGMMILSALKKQR
                     HFMQSTLTELKLDIAAFKSALTLKQNGEH"
     gene            complement(2490..>2795)
                     /locus_tag="PXD88_002548"
     CDS             complement(2490..>2795)
                     /locus_tag="PXD88_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HDL6282070.1"
                     /translation="KSLDAKREELTNEIRDILKNAEELFNETSDSSTEEYKKLKDKLA
                     KQFDDVKDRFATLKDDTVDSARTVVKQTDTLVQDNPYKAITVAGVVGLLLGVLISRR"
BASE COUNT          920 a          527 c          508 g          840 t
ORIGIN      
        1 attaagtaat gattaaatgt tttaattcga gcaaaaggag caaaaaatgc aaagacatga
       61 acagctagct caagtacaac aaacgcaaaa atgggatttt attattatcg gtggtggcgc
      121 aagtggtttg gggattgcgg tagatgcagc ttcccgtggc tataaaacct tattattaga
      181 aagccatgac tttgcgaaag gtacatcgag ccgaagcaca aaattagtcc acggtggcgt
      241 tcgctatctt gcaaatggcg atgttgcact cgtgagagaa gcattgcgtg aacgaggtcg
      301 tttagctaaa aatgcagctc atttatttaa aaaccaaagc tttattattc caaactacaa
      361 attcaaagac tgtgtaatgt atcgtgttgg tttaggctta tacgatatgc tttcaggcaa
      421 cctgagttta ggaaagactg aaaacatcag taaaactgaa gcgaaaagac gtttaccaac
      481 cttaaatgat actggtttac gtacaggcac tgtttatcaa gatgggcaat ttgatgactc
      541 acgtcttgca gtgaatatgg cacaaacggt agtagagcac ggcggtacag tactaaatca
      601 cgccaaagtg acttcactgc acaaaacgcc acaaggcaaa attgatgggg tgactttcta
      661 cgatgaactc aatcaacaag aacatactgt tttcggcact gcggtgatta acgcaaccgg
      721 cgtatttatg aatgatattt taagtatgga tcacggtagc acgaaaaaat ttgtcgtacc
      781 aagccaaggg attcacttag tattagataa atcattctta ccaagtaatg atgcgttaat
      841 gattccaaaa acctctgacg gacgagtgtt atttgctgta ccttggcacg aagtgttagt
      901 cgtagggaca acagatactc tgattgaaaa tccttcttat gagccaattc cattggaaca
      961 agaggtgaac tttattttag agacagccgc acaatatctg acaaaaaaac caactcgtga
     1021 tgatgtaaaa gcagtctttg ccggtcaacg tccgcttgcg gcaccggaaa aagaaggtca
     1081 aagcactaaa gaagtatctc gtagtcacaa agttctcact gatgcaacca gcggtttgat
     1141 tacgattaca ggtggtaaat ggacaactta tcgtcaaatg gcagaagata ccgtagaaga
     1201 agcgttaaaa gtccactctg aactaggcaa taaaccttgt gtgaccgtca acttaccgat
     1261 tcacggtaat attccggcag cacaagtgaa tctacaagat catctatatg tatatggctc
     1321 agatattcca cagttacgcg ccttaatgac tgagaccccg gaatatgcac aaaaaatcca
     1381 tccgagacta gattataccg ttgcagaagt gatctgggca gttcgccacg aaatggcaca
     1441 aacggttgag gatgtattag ctcgccgtgt tcgtttgctc ttcactgatg cgagagcggc
     1501 gattgatagt gcagcaaaag tggctgctat tatggcgaaa gaattaggta aagatgaaat
     1561 gtggcaacaa cagcaagtta tccagttcct tgatgttgcg aagcactatt tattggtaga
     1621 ttatcagcca cagccaatct aatacgctaa aagcaagcgg ttaaaatcga taaaaatatt
     1681 gcaattacgt tatttgcaac tttttaaacc attttaaccg cttgtatatt agctatcatc
     1741 tcttttatgt ttctgttgta ataaaaagaa tgctgttaac cccaatacag aaaagctaat
     1801 tcctttcata ctcaataatc tttttaccaa aaaatctaat gcaatggttt taactgccgg
     1861 tgaattgacc agtgcaagcc ctgtttgttt cacttgttta aaaggctgca taatctcatt
     1921 tttggtttta ttggtttccg ctttaaatcg cattctaagt gcattacctt ttagaactag
     1981 aagttccttt tcggttaatt taagctcttc cattttaatg ttctccattc tgtttcaaag
     2041 ttaaagcact cttaaatgcg gcaatatcta attttagctc ggttaatgta ctttgcataa
     2101 aatggcgttg ttttttcaag gcagaaagta tcatcattcc gcaaatagtc acagcaataa
     2161 acataataat ggcaatagaa aagaatactt taactttctg ttcgggtaac aaataattat
     2221 ctaaaccaaa taataaactc acaaaagaaa ctaataaaaa tacaaaagcc aataagataa
     2281 atataagtac tgaaattaat tgattttttt gctcattaat ttcaattctt gccatctcac
     2341 cacgcacttg agctatttcc aataatgtaa tgagactatt tctaaatccg gatttaatat
     2401 tatctaacat tataaccatt ccttatatta aataataagc caccccaaat atggcgtggc
     2461 ttaatgactt aatgacgaat tacagataat tatcttctag aaattaaaac acctaataat
     2521 aaccctacca caccggcaac ggtaattgct ttatacggat tatcttgaac taaggtatca
     2581 gtttgtttaa ctacagttct tgcactatca acggtatcat cttttaatgt tgcaaaacga
     2641 tcttttacat catcaaactg ttttgctaat ttatctttta actttttata ttcctccgta
     2701 gaagaatcag atgtttcatt aaataattcc tctgcatttt tcaaaatatc gcgaatctcg
     2761 tttgttaact cttcacgttt tgcatctaag ctttt
//
LOCUS       DANLXK010000201         2732 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.203, whole genome shotgun sequence.
ACCESSION   DANLXK010000201 DANLXK010000000
VERSION     DANLXK010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..1326)
                     /locus_tag="PXD88_002549"
     CDS             complement(<1..1326)
                     /locus_tag="PXD88_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6282071.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVISMRKELVNRRNQ
                     LTELENNFNTSFLTGKNKQEAYQKFSTVIESLDWDKLSKTNGVDQLATDLKTKIETDF
                     PNINFSNEKYKDLIKGYSNIQGNLVTAIPNFLEKVNNDFAISARNRDLYSHYLPYQGI
                     DDWENSNFNFRTLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKNY
                     HLVVAKMSYENLKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPLELLTVPA
                     LKESLENQESFPSRLYQKFNIFNQAIAQTTSNITKEEIDDLEKTVENFNN"
     gene            complement(1520..2710)
                     /locus_tag="PXD88_002550"
     CDS             complement(1520..2710)
                     /locus_tag="PXD88_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL6282072.1"
                     /translation="MCPGPTDADPRVLRAMSAPILGQFDPEFTSLMNETMEMERRLFQ
                     TKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNEILARSGADITIIE
                     REWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKICKQYDAMLIVDTV
                     ATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEIIAKRKRVEKGIRAE
                     SDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEALRIILQEGLEARF
                     ARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPALRSDILNHFGIEL
                     ATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVPSGDAVAAALAVYK
                     EADK"
BASE COUNT          781 a          493 c          507 g          951 t
ORIGIN      
        1 gttattgaaa ttttctacag ttttttctaa atcatcaatt tcttctttag taatgtttga
       61 tgtggtctgt gcaatagcct ggttgaaaat attaaatttc tgatacagcc tgctagggaa
      121 tgactcttgg ttttctaaac tttctttaag cgcaggtact gttaataatt caagtggatt
      181 tcctcggaaa ttgtctaaaa tatattcatt taagaattca ccattggttt catacagctt
      241 tttcagttta ttaaatgtag agtcgggttt cttggataat tcttttttca ggttttcata
      301 ggacattttc gcaactacaa gatggtaatt tttagccaga ctatcagcat ttcctgtgcg
      361 agcagaactt agagcataaa gagtgttata atctctttga atcataaatt ttcgcaggag
      421 ttctgttgaa gttagattat catcataata aactccattt agtgttcgaa agttaaaatt
      481 agaattctcc caatcatcaa taccctgata aggaaggtag tgactatata agtctctatt
      541 tctagcactt atagcaaaat cattattaac tttctccagg aagttaggaa tggctgttac
      601 taagttacct tgaatattgc tataaccttt aatgagatct ttatattttt catttgaaaa
      661 attaatatta gggaaatcag tttcaatttt agtttttaag tctgttgcta attgatctac
      721 cccattagtt tttgataatt tatcccagtc taatgattct attactgtag aaaatttttg
      781 atatgcttct tgtttatttt ttcctgttaa aaaactagta ttaaaattat tttccaattc
      841 tgttaactga tttcttctat taactaattc tttccgcatt gatataacac tattggctaa
      901 tattgcttgt tgtgcttgtt tttcacgtac acgctctaaa atagtgtcat attgagcaat
      961 ctgactcttt aaagcatctt gtaattgttg attaacagag ccttgttttt cttgttcagc
     1021 aatttgagta cgtaactctt caatttgatt aactaaatca cggaagtttt ctaactccac
     1081 attgaattcc tggggggaga tattaccacc ggttgcaatg gcattcttgc cgattgcttg
     1141 agaacctgtg cctaacgcaa aactaccttc acctacagca aggttattgg tgccagtggt
     1201 gttgcctaaa ggaagtggat tggcataaga gacttggcta agccctatca gagcgctaag
     1261 caaggtaaca gtagggagct cttttgtgtg ttttttatac agatgggtga aactaaagtt
     1321 tggcatatca aaatttcctc attaaaactt ttacttttca ttcttaaaaa aatgctccgt
     1381 gtcataatat ttaatttgat taaatgaaat aggaaaagat taaatttgtg aaaatatttt
     1441 gagtttctgt ggttttactg tggataaata tccacagtat taattattag tgagttgtat
     1501 tgtaaattta ggaaggtggt tatttatcag cctctttata gactgccaag gcagctgcaa
     1561 ccgcatcgcc tgaaggcact tttactttat ggcttaaaag tacggcttct aacgcaccta
     1621 aggttaaaag tacgttacgt ttttggcttg agaaacccat attaccgata cggattactt
     1681 ttccatctaa ggggccgaat gaggtggcta attcaatacc gaagtggttt aaaatatcac
     1741 tacgcaatgc tgggccactc ataccttctg gaatgtggaa tgccgttaca acgggggctt
     1801 tatgtttgcg atcgccaaaa attttcaaac ccattgcttc taaacctgca cataatgctt
     1861 tgtcgtttaa aatatggcga gcaaaacgag cttctaagcc ttcttgtaaa ataatgcgta
     1921 acgcttcgtg tacaccatat tgtgcagaag tggtttctgt gtggtgattt aaacggcgtg
     1981 ggctccagta atcttgtagc tgtgccaagt ctaagtagtt acttggaatt ggcggtaatg
     2041 tgccatctac atcagactct gcacgaatgc ctttttccac acgtttacgt tttgcaataa
     2101 tctcttcaat ccgtttgtta taagtgatta aagctgtgcc tgatggggcg gaaatacatt
     2161 tttgtgtacc gccgatacaa gcatcaatgc cccattcatc cacacgaata tctacaccgc
     2221 ctaaggttgc aacggtatct acaattaaca ttgcatcata ttgtttacag attttgccga
     2281 tctcttctaa cggttgcatc atagaggttg aggtttcgcc gtgaataata gcaactgctt
     2341 tatagccgcc ttttttcaac tctgcttcaa tttcttctgg ttcaaatacg gttccccact
     2401 ctctttcgat aatggtaata tctgcaccgc tacgagctaa aatttcattt aataaataac
     2461 caaaacgacc aaatgcagga attaacactt tatcgcctgg gcaaatcgct gcggttagaa
     2521 cagtttctaa gccaccacga gaggtggagt tgactacata agtttgctca tttttggttt
     2581 ggaataaacg gcgttccatt tccattgttt cattcattaa tgaggtaaac tcagggtcaa
     2641 attgccctaa aatgggtgca gacattgcac gcaaaacacg tgggtcagca tctgttgggc
     2701 cagggcacat taataaacga ggggagggat ta
//
LOCUS       DANLXK010000202         2693 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.204, whole genome shotgun sequence.
ACCESSION   DANLXK010000202 DANLXK010000000
VERSION     DANLXK010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            139..579
                     /locus_tag="PXD88_002551"
     CDS             139..579
                     /locus_tag="PXD88_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL6282073.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            605..892
                     /locus_tag="PXD88_002552"
     CDS             605..892
                     /locus_tag="PXD88_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282074.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            993..1916
                     /locus_tag="PXD88_002553"
     CDS             993..1916
                     /locus_tag="PXD88_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL6282075.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            1906..2646
                     /locus_tag="PXD88_002554"
     CDS             1906..2646
                     /locus_tag="PXD88_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL6282076.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
BASE COUNT          803 a          534 c          579 g          777 t
ORIGIN      
        1 ctataaaaat aggttataat ttttcacaca ttttttgtaa taaacgtata cttattctgt
       61 ctaataatca catttttagt taggagcatt tttatgtcat cattttcgtc atcattttca
      121 actcagtcag cttgctcaat gacagcttgt aaaaacggct tgggctttct tgtattacgt
      181 ctatttcttg cttatgaatt ttttgaagca gggttatcaa aactaaacgg tgaaaattgg
      241 tttgcctcaa ttcaagagag cttcccattc ccctttaacg tactaccagc cgatcttagc
      301 tgggctattg ctagcggagc ggaaatctta ctgcctattt tactcacttt gggtctgttc
      361 acccgcttca gtgcgttagg attaatgatc ttaacagcgg tagcgtggta tgctgttcac
      421 gctggcaatg gctacaatgt ctgcaacaat ggctataaaa tggcactcat ttatttagtg
      481 atgttagtac cacttttatt acaaggtgct ggctcgctct ctctcgattt tctgttacag
      541 aaaaaatccc caaccaaacg ctggttgaaa ttcctttaat cccttaattt atggagaatt
      601 tttaatgaaa aaagcaactt taatggcatt agctggtgca ttaactatgg caaccgcgac
      661 tgtaaacgct gaaactaaat cagtgaaagc agatgcttgt atggaagtaa aagatggcaa
      721 atgtgtaaaa accaaagcta cagaaggtaa atgtggcgaa ggcaaatgtg gagcaacctc
      781 ttctgagcca aaagcaaccg aaggtaaatg cggcgaaggg aaatgtggag caacggcacc
      841 aaaagcggca gaaggtaaat gcggtgaagg caagtgtgga gcttctaagt aagtagcgaa
      901 ggtgcgtttt ctaaacgcac ctaacctctt ataaacacaa tctacaagcg gttaaattcc
      961 gctgattttt tgcaaattaa aggaacaaga cgatgttaaa atttactggt gccggtctag
     1021 gctatcgccg tgacctagcg gacggatttt tatctctcac agataacaat ataattaatt
     1081 ttatggaagt agccccagaa aactggctga aaatgggcgg tcaggctcgg tataacttcg
     1141 ataaagtcgc tgaaaaaatc cctgttatta ttcacggttt atccctctct ctcggcgggc
     1201 aagcgccttt agatatgacg ctactaaaag ggatcaagaa tatgcagcag cagtataact
     1261 cctttttctt ctctgatcat ttaagctatt gcgaatgtga agggcattta tatgacctgc
     1321 tgccaatgcc gtttaccgat gaagccgtac atcacgtggc aaatcgcatt aaacaagtgc
     1381 aagattattt aggtatgcaa atttcccttg aaaatacgtc ctactatctg cattcaccaa
     1441 ccagtacgat gaatgaggta gagtttctca atgcaattgc ccaagaagcg gattgtggca
     1501 ttcaccttga tgtgaataat atttatgtta atggtgtcaa tcacggcttg cttgatccat
     1561 ttgtatttat tgatcaagtg gataaatctc gtgtcaatta tattcatatt gcaggccacg
     1621 atgaagatca cggtgcggcg gaagacgtta aaatgaccga gggtgaatca tttaatatgg
     1681 taaaaggcga actacgtcat ctgccaactt tactggtcga tacacacgga gaagctgtac
     1741 aaaaaactgt gtgggattta ctagagtaca cctatgaaca cctaccgcat attccaccaa
     1801 cactgttaga acgggatttc aacttcccac cgtttcaaga actgattagt gaagtacagc
     1861 acattatgag cttacagaaa aaatatgcaa aaacgaggct aaaaaatgcc gcttaaactc
     1921 gttgaagaac acaaaccgtt actcaaagag attcaagccg agtttgcgaa tgcaattcgc
     1981 cataacgatg taaagctgat gagtggtaat atctctccac agcggcttgg cgtctattct
     2041 cgcttggttc gcaataatac tctcggtttt atcgaccgtt gttatgtaca gctccctcaa
     2101 catctaagtc ctgaagaatg ggttgccgtt aaagaaaaat ttatacgaga aggtaaggct
     2161 cattcgccct ttttccaaga tattgctggc gaatttctca atttttgccg agaaaatggc
     2221 tgtatgccac cacacttgct tgagttgatg gactttgaaa atgctcaatt actggctgag
     2281 gtatcaatgg caaccgtacc atcagaattt gaatgggata acgatactat aatgcagttt
     2341 tctggtgcag ctgagctgcg tcaatatgcg gtaaacttta tccgtagcga gttcaaacag
     2401 tttgactttg agccgaccaa cgtactgatt tggcgagata cggaatttgg catctattac
     2461 aaccgcttgg aagagctgga tttcttcctg cttagctcgt tgcaagaggg ggcaaattcc
     2521 ctgaatggct tactagcaga actcagcgag tttaccgagc aaaatctgga gctaaaagcc
     2581 ttgttacgcc aactttggga aaaatgggtt gaagcagagg tgatttatcc tgtctatcct
     2641 gaatgaggat aaggtatgtg atatgtactg acatacatag taggggcggg tcc
//
LOCUS       DANLXK010000203         2571 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.206, whole genome shotgun sequence.
ACCESSION   DANLXK010000203 DANLXK010000000
VERSION     DANLXK010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..395)
                     /locus_tag="PXD88_002555"
     CDS             complement(<1..395)
                     /locus_tag="PXD88_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6282077.1"
                     /translation="MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLN
                     TELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKVRQSYILPPNVAPEEQSKQR"
     gene            complement(499..963)
                     /locus_tag="PXD88_002556"
     CDS             complement(499..963)
                     /locus_tag="PXD88_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL6282078.1"
                     /translation="MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALP
                     RNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRP
                     NEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            1172..1435
                     /locus_tag="PXD88_002557"
     CDS             1172..1435
                     /locus_tag="PXD88_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL6282079.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            complement(1519..2544)
                     /locus_tag="PXD88_002558"
     CDS             complement(1519..2544)
                     /locus_tag="PXD88_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL6282080.1"
                     /translation="MTAGDTPHDTLKTLVGALKDTREEARKANERGDRFEQEVLRLQA
                     REAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQQQKEAEAIPVGGAS
                     SGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGKTKTGFPSPFKAEGE
                     SSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGSTAMTALLGRVPIQGA
                     VTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCVRSEVTSITFVFADG
                     RISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNPGFLTMSAVDYVDVY
                     LMSHLAR"
BASE COUNT          706 a          580 c          494 g          791 t
ORIGIN      
        1 tctcgttgct ttgattgttc ttcgggagct acattcgggg gcaaaatata gctttgacga
       61 actttagctg aaaaagcaat aacttctaaa ccgtgatcaa gcattccacc gatatgtgaa
      121 tgatggtgtg attcagaagc tggtaatagt tgaaccatct cagcgtaacg ttctattggc
      181 tgctgataaa gtacctcaaa catttgacgg ttcattgata cctgttgcca aagtagccca
      241 agatattttt gtcgtaattc tgtattaagt aattgagagg ctttttccgg gtataaccac
      301 ccttcattat cttgctcaat agaaaaaata gtatcggatt tgaccgcact ttgagattta
      361 tttttaccaa aaaatttttt gaacattgaa cgcattggaa gagaccgaaa atatgaatgc
      421 tgtattgaat gaaagccgtt tagccctttg cccttttggg taagaccttt ccccttggaa
      481 aggttactct tatccccctt aggggattac aggatcgtac agttccgccg gtaaattttc
      541 acactggtct aaattgaaca gattgtgctt agcaatgaaa aagtgttgtt ccatttccgg
      601 atttccttcc tcgtcataca caatatttcc ctcctcatcg agtttttctc tctcattagg
      661 acggtagttc atcacaacag tagctttttc ccctttacgg atatatccgc cgagttcatt
      721 ggcttttttc gccgtaatcc acttacactg tttgtagccg tgttcagcgg tagcaatcca
      781 aagcaataac gtattgatac cggaatacag acggttagaa accgcattgc gaggtaatgc
      841 catattgcat tccggatggc tccacggttt taaccacgga gctgtacctt gttccaatgc
      901 agcaatgatt ctatcagtaa tatgttggta taaatcaaat ttaggttgtt gagtgttcat
      961 catgtgtttc tccaaagttt gggtaaaaaa atggggaaac acggttaccc tatggggaac
     1021 ttgtttcccc gatgggtagt ttataaaatt tcaatggcca caatttttct agaatcatca
     1081 aagccaacag aactgcctat ggcgtagtaa ttacgaatag tctgttcatc ggcattgatt
     1141 agcagatacc tatcgaggaa gagagattgg gatgagaccg gtaacgagaa ataatcgtgg
     1201 aaccagtttt gaccctcgtc acaataaata catcaataca ttggcaaccg cattattggc
     1261 acgttggcat attgagcaat tctctgagcg taatatccca gtcaatgatg aaaatctcta
     1321 tatggctcac aatattggct tagatggttt ccatcgagcg ttattagggc aatctactcg
     1381 taaagacatt gagaatatgc gtaagaatgg gatgaaacct tggatgtcca tttagctctg
     1441 ttttcaaatg acctaatcca gtttgttccg gagagagtac cgaaattttg cactctttca
     1501 tccgtggtgt atcaaacttc aacgtgctaa atgagacatt aaatatacat caacataatc
     1561 taccgcactc atcgttaaga aaccgggatt cccatcagaa tgaggaatat cgttaaagcc
     1621 cgataaggag acggttaaac aaaatggtgt taaattactt gcttgatttc gtttcacagc
     1681 tctgctttct ccactcgctc gcccattcga aatacgaccg tctgcaaaca caaaggtaat
     1741 gctcgttacc tcagaacgaa cgcaagatag cgtccaatct ccggttgatg taccggatac
     1801 aatcgccccc tcaacatcag gtaaatcaat gccattggca attaaatttt ctcgcccgat
     1861 taatacttta aacggaaacg gatctgtcac agcaccttga ataggtacac ggcctaacaa
     1921 tgccgtcatc gcagtagaac ccattaaagt cgaattttcg ggaatagtgt aataaggtgt
     1981 acgctttatt tgctgtatct gagtattacc agtcatattt tctgtcccag cattattatt
     2041 taatgctgtc ccagtatttg aactttcccc ctctgcttta aaagggcttg gaaagccggt
     2101 ttttgttttc ccggaataat tgcctgtaac cggtttacct tgttcatcgg ttaccaccat
     2161 atcatcagga tcgacccagc gaatgccatt gttatctaca ttccctgttt gtcctgctga
     2221 ttcagtccca aagccagaag aagcccctcc tacagggatt gcctctgctt ctttctgctg
     2281 ctgattacca ctttgaaccc gacctttcag ttcttcgatt tggcgattaa atccatccca
     2341 agcagcagcc aaacggcttt ctacacgact ttctacttca cccgcaatac gagaatccac
     2401 ttcggcttct cttgcttgta agcgtaatac ctcttgctca aagcgatcac cacgctcatt
     2461 tgctttacga gcttcttcac gagtatcttt taatgctcct accaacgttt ttaatgtatc
     2521 gtgaggcgta tctcctgcag taatacctaa tgtattcgcc tcctcatcac t
//
LOCUS       DANLXK010000204         2482 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.207, whole genome shotgun sequence.
ACCESSION   DANLXK010000204 DANLXK010000000
VERSION     DANLXK010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            1..1104
                     /gene="wecB"
                     /locus_tag="PXD88_002559"
     CDS             1..1104
                     /gene="wecB"
                     /locus_tag="PXD88_002559"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL6282081.1"
                     /translation="MVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHRQMLDQVLEL
                     FEITPDYDLDIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASSLAAY
                     YNQIDIAHIEAGLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENIAEGT
                     IYVTGNTVIDALFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGNGFEN
                     ICKAVSTLASDFPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVYLMRE
                     SYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQVTELL
                     NDQAAYTKMSEAHNPYGDGTAVKQILSVFQSKQ"
     gene            1119..2390
                     /gene="wecC"
                     /locus_tag="PXD88_002560"
     CDS             1119..2390
                     /gene="wecC"
                     /locus_tag="PXD88_002560"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL6282082.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
BASE COUNT          800 a          481 c          488 g          713 t
ORIGIN      
        1 atcgtcttcg gtactcgtcc tgaggcaatc aaaatggctc ccttagttga gggctttaag
       61 aaaagcggtc taaattttaa agtctgtgtt actgctcagc accgccaaat gctggaccaa
      121 gttttagaat tattcgaaat tactccagat tatgacctgg atattatgag caataagcaa
      181 acactttcta ctgtaacttc tgctatttta gaaaaaattc aacctgttat tgccgaatac
      241 aaaccaacta ctatttttgt tcatggcgat acagcaacca ctcttgcctc ttcattagca
      301 gcctattaca accaaattga tatcgctcat attgaggcag gtctaagaac gcataatatc
      361 tactctcctt ggccggaaga aggcaatcgc aaattaacag ctgctttggc aaaataccat
      421 ttcgcaccaa cacaaagcac caagaaaaat ctactcaacg aaaatattgc tgagggcacc
      481 atttatgtaa cgggtaatac ggtaattgat gccttattcc tcgcttgcaa aaaattagat
      541 gaaaatattg atttattaag ctcgctacaa gagaaatttt cttatataaa aagtaagcgt
      601 actattttga tcaccggaca tcgccgcgaa aatttcggta atggttttga gaacatctgt
      661 aaagccgttt caacattagc gtctgatttc cctgacgttc aatttatcta ccccgtacac
      721 ctcaacccaa atgtaagaga accggtcaat cgcctattag cggataaatc caatgtgcat
      781 ctcattgagc cttgcgacta tctctccttt gtttatttaa tgagagagtc ttaccttatc
      841 ttaactgact ccggaggtat tcaagaagaa gccccatcat taggaaaacc ggtattagta
      901 atgagagaca caacagaaag accggaagct gtagaagccg gaacagtaaa acttgttgga
      961 actgcacaat ctgaaattat taaacaagtt actgagttac tcaatgatca agctgcttat
     1021 acaaaaatgt ctgaggctca caacccttat ggcgatggca cagctgtgaa acaaattctc
     1081 tcagtatttc aatcaaaaca ataataaggg ataaatgtat gtcgaacttt aataccattt
     1141 cagtagtagg cttaggctat attggcttac caaccgccac tgtatttgcc caacacggtc
     1201 taaatgtaat tggcgtagat gttaatcagc acgccgtaga ccatatcaat caagggaaaa
     1261 ttcacattgt cgagcctgat ttagatgttg ctgttcacca atgtgtatct agcggaaaat
     1321 taaaagccac actgacacct gaaccagcag aagcattttt aattgctgta ccaacgcctt
     1381 ttaaaggcga ggattatgag cctgatttaa gttatattca agctgcttgc aaagcaattg
     1441 cacctgtgct ggaaaaaggt aatttagtca ttttagaatc aacctctccg gttggtgcaa
     1501 cagaacagat ggctgagtgg cttgccgagt accgtccaga gctaagcttc cctcagcaag
     1561 caggtgaaga ttctgatatt cgtatcgccc attgcccaga acgagttcta ccaggacaag
     1621 tgatgcatga attgattgaa aacgaccgta ttgtgggtgg tatgacaaat aaatgctctg
     1681 tgcaagcggt caatttatac aaaacttttg taaaaggcga ctgtatagtt accaatgccc
     1741 gtaccgcaga aatgtgtaaa ttaaccgaaa atagtttccg tgatgtcaat atcgcttttg
     1801 caaatgagct ttctattatt tgtgatcgcc tagatattaa tgtatgggaa ctaattgctt
     1861 tggctaacag acaccctcga gtcaatatct tacaaccggg ttgtggtgta ggtggacact
     1921 gcattgctgt agatccttgg tttattgtga ataaaactcc tgacttggca aaaattatcc
     1981 gcactgctcg tgaggtaaac gatcataaac ctgaatgggt tatctcaaag atgaatgaag
     2041 cggtaattta tgccttacaa aaaacaggta aatctatcga tcaaatcaaa attgcttgtt
     2101 tagggttggc attcaagcct gatattgacg atttgcgtga aagtccggca ttaaaaatta
     2161 ctgaaaaatt ggcggaaaag tatccaaatc aagtatttgc agttgagccg aatgttgaag
     2221 agctaccgaa aaaattggct aacaagaaca tttctttgat ttctgttgat gaagctctgg
     2281 aagtagctga tgttgtagtt gttttggtgg atcatagcga atttaaacta gtcaaacctg
     2341 tgtttttgaa tgatatttgt gtggtggata ctaaaggaat ttggagataa gtgatgaaaa
     2401 agaaacagca atatcgtaaa tccactatta acaatactaa tgcatcacaa caaaattcag
     2461 gcgaagtatt aaattctgtc aa
//
LOCUS       DANLXK010000205         2480 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.208, whole genome shotgun sequence.
ACCESSION   DANLXK010000205 DANLXK010000000
VERSION     DANLXK010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(116..191)
                     /locus_tag="PXD88_002561"
     tRNA            complement(116..191)
                     /locus_tag="PXD88_002561"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXD88_002562"
     tRNA            complement(195..269)
                     /locus_tag="PXD88_002562"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXD88_002563"
     tRNA            complement(313..397)
                     /locus_tag="PXD88_002563"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXD88_002564"
     tRNA            complement(432..507)
                     /locus_tag="PXD88_002564"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
     gene            754..1704
                     /gene="coaA"
                     /locus_tag="PXD88_002565"
     CDS             754..1704
                     /gene="coaA"
                     /locus_tag="PXD88_002565"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL6282083.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1857..2396
                     /locus_tag="PXD88_002566"
     CDS             1857..2396
                     /locus_tag="PXD88_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL6282084.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          780 a          512 c          471 g          717 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagcaagtga tgtgcattat
      541 agggaaattt taacagcgtg caagtgtttt ttaaaaaaat attaaaaaaa gcgttctttc
      601 gatttttaaa tatacaaaat gactattttt tgtaaaatac aacggatttt ctctgcataa
      661 ctacggcaaa ataagtgcat atattgtata gttacgccct taatttggta tttaattacc
      721 ttaatattcc agcaaaaaat tgagattttg gctatgagcc ttgaaaaaac cagcaaaatt
      781 actccttttc tcacttttga tcgccaacaa tgggctgatt tacgcaaatc cgttccattg
      841 aagctgaccg agcaagacct aaaaccgctt ttaggcttta atgaagatct ttcattagaa
      901 gaagtacgca ctatttattt accgcttgcc cgtttaattc aatactatat agaagaaaac
      961 ttaaaacgcc agacagtctt acatcgcttt ctcggcattg aaccgccaaa agtcccttac
     1021 attattagta ttgccggcag cgtatcggtt gggaaaagta cctctgcccg tattctgcaa
     1081 gctctgctct cccattaccc taaagagcga aaagtggatt taattaccac cgacggtttt
     1141 ttatatccac ttgcaacgct aaccgaaaag aacttactca agaaaaaagg ctttccggaa
     1201 tcttatgata ttcacagcct gattcgcttt gtatctgata ttaaatccgg caaacgcaat
     1261 gtgaaagctc cgatttattc acatttgacc tacgatatta tcccaaatca atttaatacg
     1321 gtggatcaac ccgatattgt gattttagaa gggctaaacg tgttacaaag tggaatgaac
     1381 tacccgtcca gcccacataa tgtatttgta tcggactttg tggatttttc tatttatgtg
     1441 gatgccgaag aaagtttgct gaaaaaatgg tatatcaacc gtttcttgaa attccgccgc
     1501 agtgcctttg ccgacccaaa ctcctatttc caccattatg cgagtttgtc cgagcaagaa
     1561 gcgattgaaa ccgcctcaac gatttgggaa gagatcaacg gcttaaattt acgccaaaat
     1621 attctcccaa gccgagagcg tgccaacctc attttaatca aagggcaaga ccacgccatt
     1681 gaaacggtaa aattacgcaa ataatatttt gcaaataatt gggctttttc gaccgcttgt
     1741 aataccttaa aatccgttga ataccactca acggattttt tatttaaatc aatgcttatt
     1801 caactatttt ttggtaagct aacgactttg agagtgattg atattaggca tatacaatga
     1861 acaaaaaatt tctacttcct ttaattctct ttttggcgtt atctgtggca tttttggttc
     1921 aactcgctcg caactcgcaa ggcgatgatc cgaaaaaatt agaatcagcc ttaattggca
     1981 aaacagttcc gagctttaat ttagaatcgg tattagatga aaaacagaca atcgaccaaa
     2041 atatcgtcaa aaccggcaaa cctcgcctgc ttaacgtgtg ggcaacttgg tgtccgactt
     2101 gttatgccga acacgaatac ttaaccattt tggcaaaaca aggggtggaa attgtcggta
     2161 ttgattataa agacgaacgc ccaaaagcga ttaaattctt agccaattac ggcaaccctt
     2221 ataaagcgat tatttttgac ccgaaaggct cactcggttt agatttaggt gtttatggtg
     2281 cacccgaaac ctttattatt gacggcaacg gcgtgattca ataccgccac gccggcgatg
     2341 taaacgacca agtgtggaac caagtgctta aaccgattta tgatggatta aagtaaatgt
     2401 ttgtatttcc tgctgacatt aagaaatcta taaaaagcaa ttatcaaaga gaatataact
     2461 ttatttttat aatagttggt
//
LOCUS       DANLXK010000206         2478 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.209, whole genome shotgun sequence.
ACCESSION   DANLXK010000206 DANLXK010000000
VERSION     DANLXK010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            44..1519
                     /gene="msr(E)"
                     /locus_tag="PXD88_002567"
     CDS             44..1519
                     /gene="msr(E)"
                     /locus_tag="PXD88_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000052512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein Msr(E)"
                     /protein_id="HDL6282085.1"
                     /translation="MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKS
                     SLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSG
                     GEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLD
                     MVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQ
                     QANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPE
                     HLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTG
                     KTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVL
                     ASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETM
                     MKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDC"
     gene            1575..2459
                     /locus_tag="PXD88_002568"
     CDS             1575..2459
                     /locus_tag="PXD88_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mph(E) family macrolide 2'-phosphotransferase"
                     /protein_id="HDL6282086.1"
                     /translation="MTIQDIQSLAEAHGLLITDKMNFNEMGIDFKVVFALDTKGQQWL
                     LRIPRRDGMREQIKKEKRILELVKKHLSVEVPDWRISSTELVAYPILKDNPVLNLDAE
                     TYEIIWNMDKDSPKYITSLAKTLFEIHSIPEKEVRENDLKIMKPSDLRPEIANNLQLV
                     KSEIGISEQLETRYRKWLDNDVLWADFTQFIHGDLYAGHVLASKDGAVSGVIDWSTAH
                     IDDPAIDFAGHVTLFGEESLKTLIIEYEKLGGKVWNKLYEQTLERAAASPLMYGLFAL
                     ETQNESLIVGAKAQLGVI"
BASE COUNT          848 a          408 c          533 g          689 t
ORIGIN      
        1 ctagctatta aaaatttcaa gagctaaaca ggagtaaata aaaatgagtt taattattaa
       61 agcgagaaac atacgcttgg attatgctgg gcgtgatgtt ttggatattg atgaattgga
      121 aattcactct tatgaccgta ttggtcttgt gggtgataac ggagcaggaa agagtagttt
      181 actcaaagta cttaatggcg aaattgtttt agccgaagcg acattacagc gttttggtga
      241 ttttgcacat atcagccaac tgggcggaat cgaaatagaa acggtcgaag accgggcaat
      301 gttatctcgc cttggtgttt ccaatgtaca aaacgacaca atgagtggcg gagaggaaac
      361 tcgtgcaaaa attgctgccg cattttccca acaagtacat ggcattctag cggatgaacc
      421 aaccagccac cttgatctca atggaataga tctacttatt ggtcaactta aagcatttga
      481 tggagcatta cttgttatca gtcatgaccg atattttctt gatatggttg tagacaagat
      541 atgggagtta aaagacggta aaattacgga atattggggt ggttactcgg attacttgcg
      601 tcaaaaagaa gaagagcgac aacaccaagc cgtagaatat gagctgatga tgaaggaacg
      661 ggagcgatta gaatctgctg tgcaagaaaa acgccagcaa gctaatcgat tagacaataa
      721 gaaaaaagga gaaaaatcca aaaactctac cgaaagtgct ggacgacttg ggcatgcaaa
      781 aatgactggc accaagcaaa gaaaactgta tcaggcagct aagagtatgg aaaagcgttt
      841 ggctgcatta gaagatattc aagcaccaga gcatttgcgt tctattcgtt ttcgtcaaag
      901 ttcagcccta gaactgcaca ataagttccc gattacggca gatggtctga gcttaaaatt
      961 tggtagccgt actatctttg atgacgctaa ctttataata ccgcttggcg ctaaagtcgc
     1021 tataactgga tcgaatggaa cagggaaaac gtccttgtta aaaatgatat cagaacgtgc
     1081 tgatggatta accatatctc caaaagctga aattggctac tttacacaaa caggatataa
     1141 atttaacacg cataaatctg tgctctcctt tatgcaggaa gagtgcgagt acacagttgc
     1201 ggaaattcgt gcagtattgg cttcaatggg gatcggagcg aatgatattc aaaaaaactt
     1261 atccgactta tcgggaggtg aaatcatcaa actgctttta tccaaaatgc ttttaggaaa
     1321 atataatatt ttgcttatgg atgaaccagg aaactatctt gacctaaaaa gtattgccgc
     1381 attagaaaca atgatgaagt cctatgcagg aactattatc ttcgtatctc atgacaagca
     1441 attggtcgat aatattgctg acattatcta cgagatcaaa gaccacaaaa tcatcaagac
     1501 ttttgagaga gattgttaat gatagccaat ctaatccgaa cattaattat tgaactcttt
     1561 aaaggaaatt aaaaatgaca attcaagata ttcaatcact tgctgaagca cacggcttgt
     1621 tgattacgga caaaatgaat ttcaatgaaa tgggcattga ttttaaggtc gtttttgctc
     1681 ttgatacaaa ggggcaacaa tggttgctgc gtattcctcg tcgtgatggc atgagggaac
     1741 aaatcaagaa agaaaaacgc attttagaat tggtaaaaaa acatctttct gtagaggttc
     1801 ctgattggag aatttcatct acagaattag tggcttatcc catacttaaa gataatcctg
     1861 ttttaaattt ggatgctgaa acctatgaaa taatttggaa tatggacaaa gatagcccga
     1921 aatacataac atctttggca aaaaccttat ttgaaatcca tagtattcct gaaaaagaag
     1981 ttcgggaaaa tgatttgaaa attatgaaac cttcagattt aagacctgaa atagcaaaca
     2041 atttgcagtt agtaaaatct gaaattggta taagtgagca attggaaacc cgctacagaa
     2101 aatggttgga taatgatgtt ctatgggcag atttcaccca atttatacat ggcgatttat
     2161 atgctgggca tgtactagct tcaaaggatg gagctgtttc aggcgttatt gattggtcaa
     2221 cagcccatat agatgaccca gcgattgatt ttgctgggca tgtaactttg tttggagaag
     2281 aaagcctcaa aactctaatc atcgagtatg aaaaactagg gggtaaagtt tggaataaac
     2341 tatatgaaca gactttagaa agagcagcgg cctctccttt gatgtatggt ttatttgcct
     2401 tagaaactca aaatgaaagc cttatcgttg gagcaaaagc tcagttggga gttatataat
     2461 ttaaaaatat gattgctg
//
LOCUS       DANLXK010000207         2472 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.210, whole genome shotgun sequence.
ACCESSION   DANLXK010000207 DANLXK010000000
VERSION     DANLXK010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1381
                     /locus_tag="PXD88_002569"
     CDS             <1..1381
                     /locus_tag="PXD88_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL6282087.1"
                     /translation="NQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKAD
                     QHSVTLAIGGDVNKLVQRPVNSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDGLW
                     LVSKTAADNIRTYLLGQGISVPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADSGW
                     TPATTFTLLRVKPEVAWENINDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKISL
                     LPSKQSEAIIPSEETEISKAITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQNI
                     SVISSNKEQQIVMTTLTEQEKVPPKKVKLEKSKKKNLQLTTLEPWNDMINPITGKEFV
                     NWLKEGIATNKFAINKPSAKLHIVDGNLFLVTPVIFEMYLQECGQPYDKETINNLQYD
                     FQGLGLHSLKKTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTHLLFGDKMLLNNH
                     CLTLQEEDT"
     gene            1421..2299
                     /locus_tag="PXD88_002570"
     CDS             1421..2299
                     /locus_tag="PXD88_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6282088.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSE
                     QLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIY
                     ISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQP
                     MSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLG
                     YIEYDVEMLRDTVNLL"
BASE COUNT          862 a          403 c          474 g          733 t
ORIGIN      
        1 aaatcagctc attcccaagt ctgcgtttga ttggctggga cagtatccag aagtcatttc
       61 ttcactgatg tatgcaatgt ctgggcataa cgataaagcc gggcttttat ctgagatcgt
      121 gcagaaagcc gatcagcata gtgttacgct agcaatcggt ggcgatgtga ataagctggt
      181 acagcgacca gttaattcat tgccgaagca aattgtgctg gctctacgtt atttactgga
      241 gcagaaaatc aaattaaata cgccaaaagg accagcagac ggctggttta ccgaagatgg
      301 gctgtggctg gtaagtaaaa ctgctgccga taatatccga acttatttac tgggacaggg
      361 gatttccgtg cctaaagata atccaaaact gtttgatgaa atgcaatctc ttggtattgt
      421 ggaagagtct ccttccggcg gtgcaatttg gagctgccgt atccaagccg attccggttg
      481 gacaccggcg acaacattta cgctattacg agttaaaccg gaggttgctt gggagaatat
      541 caacgataga ccggcgtatt ttgccggaaa agtcaaagtg attgaacaga taactgaaga
      601 ggtcaatgca gaggttcagc ctccattagt tgaagaaacc actaaaattt ctctattacc
      661 gagcaagcaa tcggaggcta ttattccgtc tgaggaaacg gaaatatcga aggcaattac
      721 aagttcagac aatgcaacat ctgcggaagt aatcataaat aatgaaaatg atttaacttc
      781 ttttgtattg gatatgtttg ctcctacaga gacaattgag caaaatattt ctgtcatttc
      841 ttcaaataaa gagcagcaaa tcgtaatgac aacacttacg gaacaagaaa aagttccgcc
      901 gaaaaaagtt aaattagaga aaagtaagaa aaaaaatctt caattaacca ctctagaacc
      961 atggaatgat atgattaatc caattactgg aaaagaattc gtaaattggt tgaaggaggg
     1021 gatagcaacc aataaatttg caattaacaa accttctgca aaattacata tagtagatgg
     1081 taatttattt ttagtcacac cagttatttt tgaaatgtat ttgcaagaat gtggccaacc
     1141 ttatgataag gaaactataa acaatcttca gtatgatttc caggggcttg gtcttcattc
     1201 tcttaaaaaa accatgacta atggtaagcc agatacaata aatttttgga agtgtgacgt
     1261 gattggtcct agaaagactt cctctttaac aggatatttg ataaaaaata ctcatctctt
     1321 atttggggat aaaatgttac taaataacca ctgtttaact ttacaggaag aggacacata
     1381 atatggattc taagatttcc ttcgatatat tattggaacg atttttttct atcgtcatta
     1441 tttacgggcg gacacgaaac gaagttataa caatattatt cgaattatca aaaagcgtta
     1501 tccaaactta aatgcgaatg atgtgactac tgatatgtta attgaatggc gtaatcaagt
     1561 tgttggtaat acaattaaag ctgtgacgtg gaataattat gtgagacacc taaaagcatt
     1621 atataatttt gcgatagcac aggggctact ttgcatgagt agtaatccat ttaatcattt
     1681 atttattaga gaatctagaa gaaaaaagaa aacttattcc agtgagcagt tgcataaaat
     1741 cgattatatt ctacataata atatcatctt acctagtttt ttaaaaccta gctggtttat
     1801 tcttgctatc attatgacat tgagatgcac aggaattagg agagggcaat tggttaaact
     1861 gaaaatcggt gatgttaatt tatcaaatag gacgatctat atttcaccag aaattaataa
     1921 aaaccatgat tatcatatag taccgatatc cgattcactt tatccccata tagaaaggct
     1981 gattcaggag ttaaagatcc ataaacaaac ggatgattgc cagttattta acctcaattt
     2041 attttctcgt tatactcgta ggaaaggtca gccgatgagc caaaaccagc ttactcatat
     2101 atttaggcat atttccgatt tggttggctt cacgtcatca ccacatagat ttcggcatac
     2161 agtagctact caattgatga agaaacctga aaatgtttat gtagttaaga aattattagg
     2221 tcataaagat atcagcgtta cattaggata tattgaatac gatgtggaaa tgctacgaga
     2281 caccgtgaac ttactctaat aaaagagaaa tgagagaaaa ctattctctc atttattgtg
     2341 ataaatagga aacttctgtc ttattttcag atgaattgat tttgagaact ttatcaaaat
     2401 ataagcgtaa ataaattgtg ctaagggata aaactatatc atgaatataa aaggaaactt
     2461 ttcaaatcaa aa
//
LOCUS       DANLXK010000208         2395 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.212, whole genome shotgun sequence.
ACCESSION   DANLXK010000208 DANLXK010000000
VERSION     DANLXK010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            18..704
                     /locus_tag="PXD88_002571"
     CDS             18..704
                     /locus_tag="PXD88_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6282089.1"
                     /translation="MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNP
                     TRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKV
                     EFMQGHIRRV"
     gene            708..1226
                     /locus_tag="PXD88_002572"
     CDS             708..1226
                     /locus_tag="PXD88_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282090.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEE
                     FLYMLETGVVPD"
     gene            1244..1654
                     /locus_tag="PXD88_002573"
     CDS             1244..1654
                     /locus_tag="PXD88_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282091.1"
                     /translation="MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ"
     gene            1754..2014
                     /locus_tag="PXD88_002574"
     CDS             1754..2014
                     /locus_tag="PXD88_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL6282092.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQC
                     NAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            2046..>2395
                     /locus_tag="PXD88_002575"
     CDS             2046..>2395
                     /locus_tag="PXD88_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL6282093.1"
                     /translation="MMNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     YEMAKQKHFNLLIC"
BASE COUNT          837 a          371 c          465 g          722 t
ORIGIN      
        1 aaaataagga gttcctaatg gatactttgg caagtcgttt gaaaatcgtt ttagaccaaa
       61 aaggtttaac acaggaaaaa tttgcagaac aaataggtgt ttcacagcca tctgttttta
      121 aaatcctgaa tggacaaact cgaaatccca caaggattta tgaaattgca aacgtcctag
      181 atgtcgatgt aaattggctc aaaaccggca aaggcgaagc accagatttt gcgaaaatcg
      241 gaaaaaatcc gaccgcttat gaagaggaaa gctcaatgct tcgacttgag gtgttagatg
      301 tatatgcctc tgccggcaat ggtagttttg tcacgggaga cttaaccgct tacacgcacg
      361 cagtagaatt tgaaaatgcc tattttgcac aagtctttca acgtgcaaat gccaaaggct
      421 tatcaattat taatgtagat ggcgactcaa tggagccaac tatcggtaac ggtgatttgc
      481 tgttcgtaga taccactaaa tccgcttatc aaggcgatgg tgtctatgtt ttcagctatg
      541 gcgaaaactt atatgtaaaa cgcttgcagt tcgccggtga tgaattgtta gtcatttccg
      601 acaatccgct ttataaagag tggagaatca catcagaaaa tgagcataaa ttccaaattc
      661 acggtaaagt ggaatttatg caagggcata ttaggagggt ttaggtgatg gaacatcaaa
      721 atctaactca tcttgtctat attacatcac ataaacaaat tggagtttat tcgatttcta
      781 atttgaatat tgatgacctt tacttcaaag gttactgtat tcagaaaaat agagttatca
      841 cattaagagc tgatcgcatt attaaacaat ttgatgattt agctcttgcc gaaaattatg
      901 ccaaaaatat tcctcaagat gtgttttatc tatttgattc tcttctgaac cagcaacgaa
      961 aagaaaaaat aacaccgatc tataaaatcg gtttgtgttt tactggattt aagcaagcta
     1021 gaaaaaatga attaattcaa ctagcagtag ataatgattt gagagtagta caaaacgtaa
     1081 ctggtgcagt tgatttttta attttcgata aagagtcgaa aactgttgga ccagcaaaac
     1141 tagcaaaagc tgaaaagtta ggaattaaaa tcatcgatga tgaagaattt ttatatatgt
     1201 tagaaactgg cgttgtgccg gattaggttt gacttctcaa tagatgttta taccaaaatc
     1261 atctaaacta aaaactaaca attacataga agaattaaac atcaaatcaa taggggaaac
     1321 cgatatgaaa aaagcactta cactacttgc actatcacta tttgcattgc ctgtacaagc
     1381 cgatagcctc gaacttgctc gtaataaagt aaagcaaatt tttatcagtg atgaagagcc
     1441 aaaggtaaaa gatgcgactt ggactgcacc atttatcttt aaggttggag tttttgatga
     1501 cggcacgaaa agagatggct acgccgaata tgtttgccaa gttttatacg accacggatt
     1561 taaaggtaaa ggtgtgttgg ttagcgtaat cgatataaaa aaactagtcc aaacaggtga
     1621 ttgggttgat cttggcaaag ctaaatgtca gtaatacata agggacagat tattctgtct
     1681 ctttgtattt aatcattaat gaagaaacct ttttactaca cagttaatac tatattttat
     1741 aatggggttc ataatgaaaa aattagtcct ctcgatttta tttgttattt cgcctatggc
     1801 tttggcttat agctgcaatg accctatccc ttactgcaaa gaaatgcaat cttgcgagca
     1861 agcaaagttt tatttaaatc aatgcaatgc cggtcgatta gatagagata acgatggcat
     1921 accttgtgaa aatgtttgtg gcaagaaagg aaagtccgag aaaaaagacg ataagaaatc
     1981 agataaatca aaatctaaaa aaacttcaaa ttagagacag gcgttgtgcc tgattaaaag
     2041 gggtaatgat gaataaccag tcagtttggc acttattttg cgatgaatcc ggtataagcg
     2101 gtaagccttt ttatgctttc ggtgcattat ggataagaga agataaaatt agcttatttg
     2161 aaaaagaaat acagaaatta cgagaaaagc actattgcac tgatgaaata aaatggcaag
     2221 gtacaaattc taaacgcttt agtgaatttt atcgtgaatt ggttagtttt ttctttcagg
     2281 ctgattattt attttttaac tgtattgtag ttcaacaagc tattgtcaat aaagcttttc
     2341 ataacggtga ttatgaaatg gcaaaacaga agcattttaa tttattgatt tgcaa
//
LOCUS       DANLXK010000209         2362 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.213, whole genome shotgun sequence.
ACCESSION   DANLXK010000209 DANLXK010000000
VERSION     DANLXK010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..168
                     /locus_tag="PXD88_002576"
     CDS             <1..168
                     /locus_tag="PXD88_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282094.1"
                     /translation="THATEYQTTLGVMKRILEPMLADFEVDPFEEAHYHKALTTLRQY
                     QPKGLGGLVRI"
     gene            404..895
                     /locus_tag="PXD88_002577"
     CDS             404..895
                     /locus_tag="PXD88_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL6282095.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPLVLFADNRQIETTMKDRDKIR
                     HLEIKPDVLHDFTNMPYENESFWHIVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            922..1179
                     /locus_tag="PXD88_002578"
     CDS             922..1179
                     /locus_tag="PXD88_002578"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282096.1"
                     /translation="MEQIKLSEKAERALILSQLNENSAMIIDLDDVALILNCGYDYVQ
                     SKISKKPGFPEPVQGINGKSVLFKSGDVIRWVNRQARTRKN"
     gene            complement(1176..2165)
                     /locus_tag="PXD88_002579"
     CDS             complement(1176..2165)
                     /locus_tag="PXD88_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL6282097.1"
                     /translation="MASIRKRGSKYQVEISKKGVRKSATFRTKAEAQAWAYEEERKIE
                     IISKGGVVDILFAEALERYQNEVSINKRTWRREIGRINNILKEPIANRYVQDIKRDDI
                     EDWIEARLKRGLKGSSVERDLSILSNVFTYCLKRWGYISENPMIGVIHPNKVPPRKQR
                     YSQEDIDKILEVSKYREDIKRSNARLAAAMLFAIETAMRAGEISGLTWDNVNFEKRIA
                     HLPMTKNGSSRDVPLSSKAIEILKRLETIKKDNSVFQLPQGNGLSARFFELKEKAGLS
                     YLNFHDTRREALSRLAKKVDVMTLAKISGHKDVKILLNTYYAPNMEEVAHLLD"
BASE COUNT          730 a          520 c          426 g          686 t
ORIGIN      
        1 acgcacgcta ccgagtatca aaccacgctt ggcgtaatga agcggatact tgaaccgatg
       61 ttagccgact tcgaggtcga tccgtttgaa gaggctcact accacaaagc cctaactacc
      121 ttaaggcaat accagccgaa aggcttaggc ggcttagtcc gaatttaatt tgcaaaaaaa
      181 tcacacaatc cgaccgcttg tgaaacaaca agcggcggat ttccataccc aaattttgag
      241 gacaagccga tgaaatacgc aaaaatcatt ctatttttaa ccgcctttgc agttgctgct
      301 gaccatctag agttacgcaa cgactgcgat ggcaaaattt gtatggctca acgctaatta
      361 acccaaccgc ttgttccgca agcggttatt ttttggagga aaaatgcaaa caaaaccgat
      421 attagatgcg tgttgtggtt cccgtatgtt tcattttgac aagcaaaatc cactcgtcct
      481 gtttgctgat aatcgacaaa tagaaaccac aatgaaagac cgagacaaaa tccgccattt
      541 agaaatcaaa cctgatgttt tacacgattt cacgaatatg ccatacgaaa acgagagttt
      601 ttggcacatt gtttttgatc cgccacattt agttcaaggt ggagaaaata gctggcttgt
      661 aaagaaatac ggcaaattac cttgcaactg gcgagaagtc ttgaagaaag gctttgacga
      721 atgtatgcga gtgctaaaac caaacggcac gcttattttc aagtggaatg aaacacaaat
      781 ccccgtttca gaaattttaa aagttattga ttgtcagccg atttatggac acaaaagcgg
      841 acgcttaaac caaacacatt ggctggcgtt tgtgaaaatt gagcaatccc tctaaatgag
      901 gggtttattt ttggagagaa tatggaacaa attaaacttt cagaaaaagc ggagagagcc
      961 ttaattcttt ctcagctcaa cgaaaattca gcaatgatta ttgatttaga tgatgttgcc
     1021 ctgattttga attgcggata tgactatgtg caatccaaga tcagtaaaaa gcccggtttc
     1081 ccagagccag tgcaaggcat taacgggaaa tcagttcttt tcaaaagtgg cgatgttatc
     1141 cgttgggtca accgtcaagc acgaacacgc aaaaattaat ccagcaaatg agcgacttct
     1201 tccatatttg gggcgtagta agtgttaagc aaaatcttca catctttatg ccctgaaatt
     1261 ttggctaagg tcatcacatc gacttttttt gccaagcgtg aaagagcctc tctcctcgtg
     1321 tcgtgaaaat tcaaataaga aagcccagcc ttttctttta actcaaagaa tctagcactt
     1381 aaaccattcc cttgtggaag ctgaaaaacg gaattatcct ttttgatggt ttccagtctt
     1441 ttcaagatct cgattgcctt tgatgataac ggaacgtctc ttgatgaacc gttttttgtc
     1501 ataggcaaat gagctattct tttctcaaaa ttcacattat cccacgttaa acccgaaatc
     1561 tcaccggcac gcattgccgt ttcaatcgca aataacatag ccgcagccaa tcgagcatta
     1621 gagcgtttaa tatcttctcg gtatttgctg acttctaaga ttttatcaat atcttcctgg
     1681 gaataacgct gttttcttgg tggcactttg tttgggtgaa taacaccgat catcggattt
     1741 tcactaatat agccccagcg ttttaagcag taggtaaata cattgcttaa aatagacaaa
     1801 tccctctcaa cacttgagcc ttttaaccct ctcttcaatc tagcttcgat ccaatcttca
     1861 atatcatctc gcttaatatc ttgtacataa cgattcgcaa taggctcttt caatatgtta
     1921 ttgattcgac ctatctctcg tcgccacgtc ctcttattaa tcgatacttc attttgatac
     1981 cgctctaacg cttccgcaaa taaaatatca actaccccac ctttcgagat gatctctatt
     2041 ttacgctctt cttcgtaagc ccatgcctgt gcctctgctt ttgtgcggaa ggtagctgat
     2101 tttctcaccc ctttcttcga gatttcgact tgatatttac tgccccgctt gcgaatgctc
     2161 gccatatttt tacctgcctt ttgtcgtaaa tttgtcgtaa tttataccat acaataaccg
     2221 acaataacag ataataaccg attttatgaa atcatcttaa ggcaaagaag agaggaaaaa
     2281 cttaagataa cctattgaaa taactataat aaacgataat aaccgacaaa aaacggaaat
     2341 aaaaaaaagc ccctaatcaa aa
//
LOCUS       DANLXK010000210         2338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.214, whole genome shotgun sequence.
ACCESSION   DANLXK010000210 DANLXK010000000
VERSION     DANLXK010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..1783)
                     /locus_tag="PXD88_002580"
     rRNA            complement(<1..1783)
                     /locus_tag="PXD88_002580"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(2100..2175)
                     /locus_tag="PXD88_002581"
     tRNA            complement(2100..2175)
                     /locus_tag="PXD88_002581"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2140..2142),aa:Ala,seq:tgc)
     gene            complement(2232..2308)
                     /locus_tag="PXD88_002582"
     tRNA            complement(2232..2308)
                     /locus_tag="PXD88_002582"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2272..2274),aa:Ile,seq:gat)
BASE COUNT          522 a          659 c          440 g          717 t
ORIGIN      
        1 ttaataaaca gttgcagcca gctggtatct tcgaccggtt caaccttcat ccgcaaggga
       61 ctacaatcta cgccggcgca ccttctcccg aagttacggt gctattttgc ctagttcctt
      121 cacccgagtt ctctcaagcg cctgagtatt ctctacctga ccacctgtgt cggtttatag
      181 tacggtttat aataacctga agcttagtgg cttttcctgg aagcgtggta tcgattactt
      241 catctccgta gagactcgtc atcacttctc ggtgttaagg aagaccggat ttgcctaatc
      301 ttcccaccta ccggcttaaa cagacatcca acagtctgct aacctaacct tctccgtccc
      361 cacatcgcag ttattacaag tacgggaata ttaacccgtt tcccatcgac tacgcttttc
      421 agcctcgcct taggggccga ctcaccctgc cccgattaac gttggacagg aacccttggt
      481 cttccggcga acgagttttt cactcgtttt atcgttactt atgtcagcat tcgcacttgt
      541 gatatctcca gcagacttct caatccacct tcatcgactt acacaacgct cccctaccca
      601 acagactttc gtctgatgcc gcagcttcgg tgctatattt gagccccgtt acatcttccg
      661 cgcaggccga ctcgactagt gagctattac gctttcttta aatggtggct gcttctaagc
      721 caacatccta gctgtctaag ccttcccact tcgtttccca cttaatatag actttgggac
      781 cttagctggc ggtctgggtt gtttccctct ccacgatgga cgttagcacc caccgtgtgt
      841 ctcctgagta tcactcttcg gtattcgcag tttgcatcgg gttggtaatc cgggatggac
      901 ccctagccga aacagtgctc tacccccgaa ggtgtccgct caaggctcta cctaaataga
      961 tttcggggag aaccagctat ctcccggttt gattggcctt tcacccccag ccacaagtca
     1021 tccgctaatt tttcaacatt agtcggttcg gtcctccagt tagtgttacc caaccttcaa
     1081 cctgcccatg gctagatcac cgggtttcgg gtctatacct tgcaactaca cgcccagtta
     1141 agactcggtt tccctacggc tcccttattc agttaacctt gctacaaaat ataagtcgct
     1201 gacccattat acaaaaggta cgcagtcaca agattactct tgctcccact gcttgtacgc
     1261 acaaggtttc aggttctatt tcactcccct cgccggggtt cttttcacct ttccttcaca
     1321 gtactggttc actatcggtc aatcaggagt atttagcctt ggaggatggt ccccccatct
     1381 tcaaacagga tatcacgtgt cccgccctac ttgttgttag cctagtacca caatggagtt
     1441 ttaaggtacg ggattatcac cctctacgat tgtccttccc agaacattcc cctaacttta
     1501 ctgctatcac taactggctc tttcgcgttc gctcgccgct actaacgaaa tctcggttga
     1561 tttcttttcc tcggggtact tagatgtttc agttctcccg gtttgcctca cacagctatg
     1621 tattcactgg gtgatagtag gttcttcacc tactgggttt ccccattcgg acatcttgga
     1681 ttaaacgcct cttatcgact catccaagct tttcgcagat tggcacgtcc ttcttcgcct
     1741 ctgattgcca aggcatccac cttgtgcgct tagtcactta actatacaac ctcaaatgtt
     1801 ttctaaaact tctcaaaaat aaaagtaaaa aaacaatgaa gtcagtttta caactaaaca
     1861 cttgactgct tttgttcagt caagattttt tctactcaga ctttcaattt attcgttatc
     1921 acttatgtat aattacttat gcgtaacgaa cttgaaatat ctctcagttt ttcagcttgt
     1981 ttccatattg ttaaagaaca aagataatgg ctttcgccta tcatcatacc taaaattgca
     2041 aataatccgg tatttttaac cgcttgtaat cttaggtatg atgataaagt cacgatgatt
     2101 ggtggagata agcgggatcg aaccgctgac ctcctgcgtg caaggcaggc gctctcccag
     2161 ctgagctata tccccatttc atcttccgtt ttcttcactc atagtcgctt cgctttcgct
     2221 tgccttctga gtggtgggtc tgagtggact tgaaccaccg acctcaccct tatcaggggt
     2281 gcgctctaac cacctgagct acagacccaa cggatgacct tcggtttttt gtcttctt
//
LOCUS       DANLXK010000211         2302 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.215, whole genome shotgun sequence.
ACCESSION   DANLXK010000211 DANLXK010000000
VERSION     DANLXK010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            108..536
                     /locus_tag="PXD88_002583"
     CDS             108..536
                     /locus_tag="PXD88_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL6282098.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            542..1264
                     /locus_tag="PXD88_002584"
     CDS             542..1264
                     /locus_tag="PXD88_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL6282099.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            1274..1693
                     /gene="psiE"
                     /locus_tag="PXD88_002585"
     CDS             1274..1693
                     /gene="psiE"
                     /locus_tag="PXD88_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL6282100.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            1702..>2302
                     /locus_tag="PXD88_002586"
     CDS             1702..>2302
                     /locus_tag="PXD88_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL6282101.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQL"
BASE COUNT          666 a          462 c          483 g          691 t
ORIGIN      
        1 accaaaaatt ttgcgaagat caaatagaaa atttgataaa ctagaactaa ctcgcatttt
       61 attgctccat atgattagaa attaacctaa aatattaaaa ttttgttatg acacacgatt
      121 ggctctattg ggcattagcc tctgcacttt ttgcagcatt aaccgccatt tttgccaaag
      181 ttggcttaca aggcgtagat tctgatttcg ccacttttat tcgcacggta gttattatta
      241 ttgcacttat tgcctttctc acttacagcg gaaaatggca gccgttagat agcttgagca
      301 gcaaaaactg gctgttttta atcttatccg gcttggcaac aggattgtct tggtcggcgt
      361 atttcaaagc attgcaaatg ggtaatgctt cccaagtcgc tccaatcgat aaattcagct
      421 tggtgttagt tacccttttt gcagtaattt tcttaggcga acgcccaagc ggacaagatt
      481 ggcttggcat tggcttagtt gctggtggcg tactgttact tgccttcaag cggtgatttt
      541 tatgcaaaat tttgcaaata ttgaaattgc gtttattcat cggaaagcac ctctgccgag
      601 tgatttctcc taccctgaaa tgcccggcgg tttaactgaa aaacaggtgc aaaaatggca
      661 aagccgccga gtcgcctttt ttctgctgac ggaattgttt aaaaaacacc atctggattt
      721 agatttatta gctgatatgc aacgctcccc aagcggtcgc acttttgtcg attctgagca
      781 aattgacttt aacatcagcc attcagggga atggatagcg gtcatttttt cgtattcttt
      841 tgcaaaatta gcggtcggca ttgatattga acacccacaa aaaatcagac gttaccacga
      901 tttaatctgc cattacggaa acgctgaaga acaaaatgtt ttattagcca accactcccc
      961 cattctaagc aacctcgccg aacgctttta tttgagctgg tgcttgcgag aggcgatatt
     1021 gaaatcgcaa ggggtgggga ttgtgaaact gtccgaagta aaacatttac cgttagaaaa
     1081 acagatcttt tccgcccatt gtccgaaagg caagctgcat tttgtgagcg aactgccgtt
     1141 ctatttaagc tacttctatc aacaacctca aaatatgcta ttatctgaac ctttgctata
     1201 ccattggcaa aacgggcagt ttcagcctat aaagtgccaa tcacttgttt atgatgttaa
     1261 ttaaggataa cgaatgccta aaaaatcttt agaagaacac cattccagtt ttggcaaaat
     1321 tgcttccgaa acctttcagt ggattatgaa tattgccttg ctagtaacag gagcattgct
     1381 ttcttactcg ctgtttgctg aagcctattc actctatgaa ctttccttta gcgacagtga
     1441 gaaattccaa attgtagaaa aaatagtaat tttctttctc tattttgagt ttcttgcgtt
     1501 gattgtgaaa tatttcaaat cgaattatca ctttccgtta cgctatttcc tctatatcgg
     1561 gattactgcc atggtgcgtt tgattattgt cgatcattct aatgcgttgc atacactatt
     1621 attcgcactc tctattttgg tgatgattat agcattatat attgtacaca ccgatcgttt
     1681 acataaaagc taggaactaa tatgaagcta acccaatatc agcacaatga tttacagatt
     1741 ctaaaccgag aaaccgtcta taaagggcat tttgagctac aaaaaatcac tttccgccat
     1801 aagctgtttt ccggtgaaat gagcggtgaa gtggtgcgtg aactcttaat taaaggcgaa
     1861 gcggcggctt taattgccta tgatccaacc ttagataagg tagtattaat tgagcaagtg
     1921 cggattggag cttacgatgc aggacagaaa aaatcccctt ggttgctgga attggttgcc
     1981 ggtatggtag ataaaggcaa cgaagagccg gcagaagtgg caatgcgtga agccaaagaa
     2041 gaagccggct tggaagtcac aacagtgcaa cacgccttaa gcgtatggga cagtcccggt
     2101 ggacaactgg aacgcttgca cctgtttctc ggcttgattg acagcaccca agtgaaatcc
     2161 ggcgaggtac acggcttact ggaagaagaa aatgaagaca ttttggttca cgttgtaagc
     2221 cgtgaacagg catatcaatg ggtagaagac ggcacaattg acaatgtgat tgcggtaatt
     2281 gggctacaat ggttgcaatt aa
//
LOCUS       DANLXK010000212         2193 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.216, whole genome shotgun sequence.
ACCESSION   DANLXK010000212 DANLXK010000000
VERSION     DANLXK010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(69..521)
                     /locus_tag="PXD88_002587"
     CDS             complement(69..521)
                     /locus_tag="PXD88_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL6282102.1"
                     /translation="MAKYQMMKLPGGILSPLNDEEAERLKSFQNGEQYEIEIKRQRNP
                     AFHRKVFAFFNFCFDCWSGSHSDWEFQDPTAQFDTFRKHLTVMAGFYVQTWNLKGQVR
                     IEAKSLSYANMEQDEFEQAYKALINAAIKHVFNNTKDENTINQLYSFF"
     gene            complement(640..1212)
                     /locus_tag="PXD88_002588"
     CDS             complement(640..1212)
                     /locus_tag="PXD88_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6282103.1"
                     /translation="MTDFDKDTYQTPKYFRNWLNHRYAWFHIDGCSNGKNALYSYWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILERVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTGEEVKGNNKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            complement(1209..1856)
                     /locus_tag="PXD88_002589"
     CDS             complement(1209..1856)
                     /locus_tag="PXD88_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL6282104.1"
                     /translation="MSLQKTEQNRPLAVLGEQQGKLSGEVESLVDRIFDQLLASCPSI
                     QYWSEKQVATAKKQWILGFAENGIRTVEQVRQGMKALRAKTDDFVPSIGKFIQWCNTI
                     DYHELGLPDLEQLLKLLDRSLRFDFIEIQKLKFKSNAEYWLITDLYARNKKYSWKDET
                     LRNQAEKALVAMAKRIMSGEQIPPPKPLIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            complement(1856..2140)
                     /locus_tag="PXD88_002590"
     CDS             complement(1856..2140)
                     /locus_tag="PXD88_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282105.1"
                     /translation="MLLEQFGITGKLAEDFIVHRKAKKAPITETALNGYQREADKAKI
                     PIQKAVEIAIERGWTGFKADWQWQDDQPKHRPKDNMRAEWNNPEAWAEVF"
BASE COUNT          564 a          548 c          396 g          685 t
ORIGIN      
        1 taataacatt ctttttcatt ttaatctcct gcaattaaac ctaattaaat atggcgattt
       61 cgccttaatt aaaaaaacga atacaactga tttatcgtat tctcatcttt ggtattgtta
      121 aaaacgtgct tgatagctgc attaatcaac gctttataag cctgctcgaa ctcgtcttgt
      181 tccatattgg cgtagcttag gcttttcgcc tcaatccgca cttgcccttt taaattccac
      241 gtctgcacat aaaaccctgc cattacagtt aaatgcttgc ggaaagtatc aaattgagcg
      301 gttggatctt ggaactccca atcggaatgg ctaccactcc agcaatcaaa acagaaatta
      361 aagaacgcaa acaccttgcg atgaaaagcg ggattacgct ggcgtttaat ctcgatttcg
      421 tactgctcgc cattctgaaa cgatttcaac cgctcggctt cttcatcgtt taacgggctt
      481 aaaatcccac ccggcaattt catcatttgg tatttagcca tctctatccc tcaatgaaaa
      541 tccaaaagct ctaaatacca aatatgctaa ccacccgaag aaaattagaa tccctaaaaa
      601 tccaatagta gaatcactca tcacacttcc cacccttcgt tatttttcat agccgcccag
      661 ctccttaatc ttatccagcg gcatttgacg ggtaactatt ccctccacaa acgggtcgaa
      721 caccgctacc atcgagcctt tgttgttgcc tttcacttcc tcgcctgtga gcggattaat
      781 aaaattaata cgcccaccga taatgtcgat cacctcacta gcgttttctt ggataacctg
      841 ataccaacga gtagatttgt ctgccggcaa cagcattacc acaatatgac cggctttttt
      901 cagctccgca gcacgctgaa caaaagggag tggattgcta tatggcggat taacgaagat
      961 acggagtaat tcgccccaat ctgccacacg ttccaagatc acatcgagca agttttctgc
     1021 caagaaatcc tcggcaatct gaccacttag cgtgtcttcg tccaagcctt ctgccgcttt
     1081 gccaatccag tagctataca atgcgttttt gccgttagaa caaccgtcaa tgtgaaacca
     1141 cgcatagcga tgatttagcc aattacggaa atactttggc gtttggtaag tgtctttatc
     1201 aaaatctgtc attgcattgc tcctgcttgt ttcttctcgt ccaaaattcg ctgaatgcgt
     1261 ggatctattg gcactttctt tttctcttcg attagcggtt taggtggtgg aatttgctct
     1321 ccgctcataa ttcgttttgc cattgccact aaggcttttt ctgcttgatt acgtaaggtt
     1381 tcatctttcc aactatattt cttgttacgt gcgtataggt cagttatcaa ccaatattca
     1441 gcgtttgatt taaatttaag tttctgaatc tcaataaaat caaatcttaa agagcgatcc
     1501 aaaagcttga gtaactgctc taaatcaggt aatcctaatt cgtgatagtc aatcgtattg
     1561 caccactgga taaatttgcc gatactcggg acgaaatcat cagtttttgc tcttaacgct
     1621 ttcataccct gtcgaacttg ctcaaccgtg cggattccgt tctccgcaaa gcctaaaatc
     1681 cattgttttt tggctgtggc aacttgcttt tccgaccagt attgaatact tgggcaactc
     1741 gcaagcaact ggtcaaatat tctgtccaca aggctttcaa cctcaccgga taatttgcct
     1801 tgctgctcac ctaacaccgc aagcggtcga ttttgctctg ttttttgcag gctcatcaaa
     1861 acacctccgc ccacgcttca gggttattcc attcagctcg catattgtct tttgggcgat
     1921 gtttaggttg atcgtcttgc cactgccaat cggctttaaa tcctgtccag ccacgttcaa
     1981 tcgcaatttc taccgccttt tgaatcggga ttttggcttt gtctgcctct cgctgatagc
     2041 cattcagtgc agtttcggta atcggggctt ttttggcttt gcggtgtacg ataaaatcct
     2101 ccgccaattt gcctgtaatg ccgaattgtt caagcaacac caacacagca gattttttag
     2161 tctcacgtgt gtgtgcgtta atacccgtaa ggg
//
LOCUS       DANLXK010000213         2160 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.217, whole genome shotgun sequence.
ACCESSION   DANLXK010000213 DANLXK010000000
VERSION     DANLXK010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(272..583)
                     /locus_tag="PXD88_002591"
     CDS             complement(272..583)
                     /locus_tag="PXD88_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282106.1"
                     /translation="MTKTKHKHPLAEAFYQLGKDVGEINRRLVVVDEQSLKLQELKQT
                     INEQTEQIKTLGTVVNKLIDALQQSQSLNVRSESAVAATENQDHLNDGVQYQGPGRAR
                     A"
     gene            complement(576..725)
                     /locus_tag="PXD88_002592"
     CDS             complement(576..725)
                     /locus_tag="PXD88_002592"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282107.1"
                     /translation="MDNILITIHPTETIDITIDKLVVIHIGEEYGDTPDFLTIYQQAK
                     ELNDD"
     gene            complement(959..1252)
                     /locus_tag="PXD88_002593"
     CDS             complement(959..1252)
                     /locus_tag="PXD88_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282108.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGEESDSEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYNHLKETGQIVV"
     gene            complement(1375..>2160)
                     /locus_tag="PXD88_002594"
     CDS             complement(1375..>2160)
                     /locus_tag="PXD88_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282109.1"
                     /translation="PMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAA
                     NTITANEIATGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTI
                     TGTTITGNTISGGSINGTTISGTTISGGTIKGARLEGATGKFTGELEVSQLIGGGVIE
                     QVTGKLKYSHRNRIYEGQEHGENSSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESF
                     ILEANQSITKTIEKSLNRNASGSSLDFIVLAYSISTAKYISIS"
BASE COUNT          566 a          429 c          425 g          740 t
ORIGIN      
        1 gtgtccgcga atgggtggct ggtgaacgta aaatcccttt cggggtttgg gctgatttga
       61 ccgaattggt taaagccaaa aaagctaact tatcatcaat tcttaaaaaa ttaacaatag
      121 attagcactg attttaaagc ccctctcggg gcttaattat agaaaataaa atcacaatgg
      181 ctaattttgc caaatttgcc tgttaaaacg tgcgaaaaat tacaaaaaac ggctagagct
      241 atagccgttt tgagtgcaga tgttaacaga gttaagctct agcacgtcct gggccttgat
      301 actgcacacc atcatttaaa tgatcttgat tttcggttgc tgctacagca gattctgatc
      361 ttacatttaa actttgtgac tgttgtaatg catcaataag tttatttacc actgttccga
      421 gtgttttaat ttgctcggtt tgctcattaa tagtctgctt taactcttgc agttttaatg
      481 attgctcatc cacaaccact aatcgacggt taatctctcc tacgtcttta cctaattgat
      541 aaaatgcttc tgcaagtggg tgtttgtgtt tagttttagt catcgttaag ctcctttgct
      601 tgttggtata tagttaaaaa gtcaggtgtg tcaccatact cctcacctat atggataact
      661 accagtttgt ctatggtgat atcaatagtt tcggttggat gtatagtgat taagatattg
      721 tccatattcc cgccttaaat ttgggtttgg tcagggataa gttggatcgt gccgtagtac
      781 tgccattttg ggtggatagc tcaatttgag gctctgtgct gccctctact atggcgtgta
      841 aatccagcct aataccctct aaatttacag gctcgccatt tgtttgccta aaaaaaaagg
      901 cgataactta cgtcatcgcc tctgaaaaac ttaaatttat gcttttgcat ttagacccct
      961 acactacaat ctgaccggtt tctttgaggt ggttgtagat acgtcctaac ataatctgcg
     1021 ttggcgtttt gccaatatcc tcttttgtta gcggtgcatc agtaatcgct ttggctgatt
     1081 gagcatcaat atatttgtac tcacttgtga tgattacaaa gtttgttacc tcgctatcgc
     1141 tctcctcacc tgtgccaacg acatatttag cattgagtga gccgtcgtct tgagttgagt
     1201 agcttgcgat ggtggaatac attgggttta agattttgtt aaaagttgtc ataatttttc
     1261 cttttatcga tagttgaaat aaaaacaatc gcctgaattg acctgcaagc ggttggtttt
     1321 ggatatttaa aaaagctgtg gctatccgca ctcagtacta cattgaggcg ataactaact
     1381 gatagagata tatttagccg tcgaaatgga ataggctaaa acaataaaat ctaaagagct
     1441 accacttgca tttctattta atgatttctc tattgttttt gtgattgatt gatttgcttc
     1501 taaaatgaat gactcacttc cgatgatttc aatatacctc cttgtcggcg ctgcatttat
     1561 ggtgacagtt gctttataga tatattcgtg tctataaatt ggagaggagg agttttctcc
     1621 atgttcttgc ccctcataaa tgcgattacg atgtgaatat tttaatttgc ctgtaacctg
     1681 ctctataaca cctcccccta ttaattgaga tacttcaagt tcgccggtaa atttgccagt
     1741 agccccctcc aatcttgcac cctttattgt gccgccagag atagttgtac cgctaattgt
     1801 tgtaccatta atacttccgc cactaattgt attaccagta attgtcgtac ctgtaattgt
     1861 accagcagtt accttaccaa gatttgccga tattgccgct aaattgttta catttagctt
     1921 atccgcagtg atcgaactcc ccacaatatg acttgcatta atcgagtttg ctgccatatt
     1981 tcgagctgca atcgtgccgg ttgcgatttc gttggcggta atggtatttg ctgcaatttg
     2041 ttgagcagta acggtattag taactattga tccaccgtgg atagcggtta caccggcatt
     2101 ttgccaaggg ctaggctgag tgatatctgt aacattatca ctagcctcct caagcattgg
//
LOCUS       DANLXK010000214         2134 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.218, whole genome shotgun sequence.
ACCESSION   DANLXK010000214 DANLXK010000000
VERSION     DANLXK010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            322..576
                     /locus_tag="PXD88_002595"
     CDS             322..576
                     /locus_tag="PXD88_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282110.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXD88_002596"
     CDS             776..952
                     /locus_tag="PXD88_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282111.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..1464
                     /locus_tag="PXD88_002597"
     CDS             913..1464
                     /locus_tag="PXD88_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282112.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILECENTPKLLELYKQN
                     KFQILNTIGSENGLKTLFFIPDF"
     gene            1534..1764
                     /locus_tag="PXD88_002598"
     CDS             1534..1764
                     /locus_tag="PXD88_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282113.1"
                     /translation="MSLLKKAQTFISIFNDVRTKNEAQRQSSNNLNVALKNAAEMRAE
                     MNGFSLKPQKRSTYFADHYGCGIHAVETYDNV"
     gene            1863..>2134
                     /locus_tag="PXD88_002599"
     CDS             1863..>2134
                     /locus_tag="PXD88_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011497995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6282114.1"
                     /translation="MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTSYRYQQ
                     AVEQSGVDALLNQNRRVPNLKNRVDEATEQAVVKFAFDNPAFGQVRV"
BASE COUNT          764 a          373 c          382 g          615 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtgaaaata cgcctaaatt attagaacta
     1381 tataaacaaa ataaatttca aattctcaat accattggaa gtgagaatgg tctaaaaaca
     1441 cttttcttta ttcctgattt ttaactacag ctaatatttc attagaagaa agtcgccagc
     1501 tttgtcagga agtcatatat gggagaaaga acaatgtctc tacttaaaaa agcacaaacg
     1561 tttatttcta tttttaatga cgtgcgaact aaaaatgaag ctcaacgcca gtcttcaaac
     1621 aatttaaatg ttgccttgaa aaatgctgct gaaatgagag ctgagatgaa tgggttctcc
     1681 cttaagcctc aaaagcgttc tacttacttt gctgaccatt atggttgtgg tattcatgca
     1741 gtagaaacct atgataatgt gtagaagatc agacttgatc tgacaattca ctctaaaaag
     1801 tgagagtttc ccgtttagaa tatgagtgtc caaattcaat ctaaacaaaa aaggaaactc
     1861 tcatgtttta ttctaacaac cctctcatta aacacaagac cggtttatta aatttagcag
     1921 aagaactggg caatatctct caagcctgta aggtgatggg gatgagtcga gatacatcct
     1981 atcgctatca acaagcagtt gagcaaagtg gggtggatgc cttacttaat caaaatcggc
     2041 gtgttcctaa tctaaaaaat cgtgtggatg aggcaacaga gcaagctgtt gtgaagtttg
     2101 cattcgataa tccggcattt gggcaggtac gagt
//
LOCUS       DANLXK010000215         2113 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.219, whole genome shotgun sequence.
ACCESSION   DANLXK010000215 DANLXK010000000
VERSION     DANLXK010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(140..358)
                     /gene="ilvM"
                     /locus_tag="PXD88_002600"
     CDS             complement(140..358)
                     /gene="ilvM"
                     /locus_tag="PXD88_002600"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL6282115.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(368..2020)
                     /locus_tag="PXD88_002601"
     CDS             complement(368..2020)
                     /locus_tag="PXD88_002601"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL6282116.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMFNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          616 a          453 c          437 g          607 t
ORIGIN      
        1 gaatgggaaa ataaagagca ataagtgaaa aaaaagagtt gaaatttgaa gaaatgaata
       61 aaatcaaaag gatagcgaat gataaatttt aagcataaaa aagccgtgta tttttttaca
      121 cggcgaatga aaagtctgat taattgattt caatgatatc aaacagtttt tctaattgat
      181 ggcttaaaag agagagtgga cgtttacttg ctaatgtaaa atttaggtta aaggcgctgt
      241 ctgttgattc tacatttaag catttcacct caaaaccacg gtgacgtata acccgtaaaa
      301 tacgctctaa ggtttcaggg cgtttgttag ctttaagcgt taattgatat tcttccatct
      361 tattctccta tacctcatcg tctaacatat cggcattaca cgcccccggc ggtaccagtg
      421 gccaaacgtt atcttcctgt ggaatacaaa cgtgaagtaa gtaagcccct ttggcattga
      481 acattctgtc tattgcatct gacacttcgc tcgctttctc aattcgctca ccgtcaatat
      541 caaaggcttt cgccaacaac acaaaatcag ggttatcatc taaaatggtt tggctgtgtc
      601 gcccgtggaa gaacagcgat tgccattggc gaaccatacc taaacgttgg ttatccagta
      661 ataggatttt gaccgctaaa tcagctcttt taagcgtgcc gagttcttga atattcatca
      721 taatcgagcc atcaccggta attaaaataa cctgatcttc cgctcgagct ttgattgccc
      781 caatcgccgc aggcaagcca aaacccatag agccaaaacc ggcagaggtg atatagtttt
      841 tcggatcgtg ataagttaaa tgttgtgccg accacatttg atgctgccct acatcggtag
      901 tgacgatgct gtttttggct ttccgctgtg aaagcgtgtg taataacgcc acggcatcaa
      961 tattgccatc accactattt tcttgatatt gaaagtcaaa ttgctgcttt aaattacgca
     1021 catcttcacg ccatggttca atatctaacg gttgagccaa gtaattcacg gcttcaatca
     1081 aattcccttt taaggcaact tgtgcttgac ggagcttgtt gatttccgca ttgtcgatat
     1141 caatgtgaat cactttagcg tgaggggcaa aagtgtctaa tttgccggta acacggtcat
     1201 caaagcgggc accacaggca atgagtaaat cacactcttg taccgcgtaa tttgctgctt
     1261 ttgtgccgtg cataccgatc attcccatat agagcggatc ggttggatcg atagtgccta
     1321 acccttttaa ggtagaaaca gacggaatat ttgcaatttt tacaaaattt ctgaccgctt
     1381 gtacaccatc agccatacta acgccaccgc cgacataaag taccgggcgt ttggcggtgg
     1441 ctaataattg tttggcaacc actaatttgt tgggatcttg tgcatcggca ggttctttag
     1501 gataaacgat aggcagagcc gaagtttgag ctagttgcac atcacgtgga atatcgacca
     1561 gcaccggacc aggtctgcca ctttgtgcaa tttggaatgc gagggctaaa atttcaggga
     1621 gctcctcaat attctgaaca ataaaactgt gtttagtgca agcgagtgac aaacctagta
     1681 catcagcttc ttggaaggca tcagtgccga ttaaatggct ggcaacttgt ccggtaattg
     1741 ctaccacagg aatagaatca agtgcggcat cgcctaaacc ggtgattaaa ttagttgccc
     1801 cagggccgga ggtcgcaata caaaccccta ctttacctgt tgcacgggca taaccgatag
     1861 ctgccattgc agcaccttgt tcattgcggc aaagtaaatg atctaagcct gaatcataaa
     1921 ttgcatcata ggtaggcata atagccccgc ccggatagcc aaaaagtgtc gttaccccgt
     1981 gagcttttaa actctcggtg ataaatcttg ctccattcat ggatgttgtg tccttaatat
     2041 ttttattatt ttaaaaccag gcaatataga taacataaat tccctgtttt ttaaacttta
     2101 ttttcagtaa aaa
//
LOCUS       DANLXK010000216         2099 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.220, whole genome shotgun sequence.
ACCESSION   DANLXK010000216 DANLXK010000000
VERSION     DANLXK010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..609
                     /locus_tag="PXD88_002602"
     CDS             <1..609
                     /locus_tag="PXD88_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL6282117.1"
                     /translation="AEEAKKIAEAKGIGNKEYKDGLNELEEKNETGKNGEEIRTYGYL
                     YNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTENLPTEGKATYKGEAFDSHGNNSN
                     SVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGEIKNDSIIASAHQKYNDQAVGNG
                     SYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAGTREEQK"
     gene            658..2052
                     /locus_tag="PXD88_002603"
     CDS             658..2052
                     /locus_tag="PXD88_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6282118.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT          696 a          358 c          479 g          566 t
ORIGIN      
        1 gctgaagaag caaaaaaaat tgcagaggca aaaggaattg gcaataaaga atataaagat
       61 ggattaaatg agttagaaga aaaaaatgaa acaggtaaaa acggagaaga gattcgaacc
      121 tatggttatc tctataacag ccattattcc gttgtaactg ccaaaatgaa acaaacttta
      181 caggaaaatg gtcgtcaaat ggaacctacg gttgaagtga aagggcttaa aactgagaat
      241 ttaccgacag agggcaaagc aacatataaa ggagaagcct ttgattctca cggtaataac
      301 agcaattcag tagtaggtgg agaattaatc tataatgttg atttctctag tcgtaccgga
      361 tcaggtctag ttaaaaatgt acagggcggt tctatcgagt tagcacaagg cgaaataaaa
      421 aatgatagta ttatagcttc tgctcaccaa aagtataatg atcaggctgt tggaaatggt
      481 agttacaata tccaattctt tggtccaaat gcagaagaaa ttggagggaa aattgagctt
      541 aatggtgagg gcgaaggctc aatgaagcag atgttaggta ttgcaggaac ccgagaagaa
      601 caaaaataac atttaatacc caatgccgtt taatcttaaa cggcattctt ttttactatg
      661 tataaaaaac attttctatt tttacttgtt tcgcctttag taatggcgga aacggttgag
      721 tttcagcaag atcccaaaga gtttgatggg cagcgacaag cggttaaatt tgagcaagaa
      781 attgcaaaaa aggatttaaa attaaccgct tacttggagg aagataattc tcttaaaggt
      841 attgaacagc acattaacca agcgattctt agacaagatt gggcgaagct ggaaaggctg
      901 cttggcgatt atgcaaagca agagcaattt gatccgctac ttttagacta tgctttggcg
      961 gcattggctt atgctaaaaa agattatcgc tctgcggcgt tttattatca gcagttgctg
     1021 aaaaaacagc ctgatttaac ctaccctcgt tttgatttgg ctctgatttt aaaagaggat
     1081 tatcgctaca gggaagcaga gcaagaattt aagcaactca aaaccgatga tttacgcaat
     1141 gcggtgaaca gtgcgttggc tcaaatagag gaggaagaga gctggaagcc ggatttttat
     1201 ttgcaatata ctcaaaccaa caatgtgaat aatgcttctt cgtcgccaac ggtaaatgta
     1261 aacgggcgga tttttattaa agaatcagac agcttgccgc agtcggcaaa aggcgtaaga
     1321 tatggcgttg gcttgagtaa aatgcgaaat atcggcggta atcattttgt gggagtcgat
     1381 cttggctata acggcgttta ttactggaat aaccacgatt atagcgaaca gtcggtctca
     1441 ctaacaccaa aatatagcta cagaacggca acttatcgta tcggggtttc gccctttatt
     1501 gagcagaatt ggctgggtag ctcacggtat aactatcaat ttggtagcag tatcaatgct
     1561 gttaaacttt ttgaacgagg gctgatttcc ggctcattca gccatctgca aaaacgttat
     1621 agtgaacagc atattgccga ccgttacaat ggttatcgca accaactcac gctaggtacg
     1681 caatggcaag cggtcaaaaa ttggcgattt tttgcaaatc ttaacgctag ccgtgaaatt
     1741 acccgtgaga aagctcaatc ttccaataag tggctggcga ccattggcgt aatttaccaa
     1801 accccaagct gggcaagttc ggtaagtgtc ggatatggca agcgttattt tgctgataaa
     1861 cattatctgt ttggctataa acgccaagat aaggaatatc aagcgaatgt ggcggtgtgg
     1921 aatcgaagtt ggcactggca agggattgtg ccgaaattga atttccgtta tcaaaaaatc
     1981 gatagcaata ttgccgattt ctactctcgt agcaataaag aagtctttat gaccttagag
     2041 aaactatttt aaggctgtgt atgaatgtcg gggagaaaaa ttttctcccc gatatttat
//
LOCUS       DANLXK010000217         2075 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.221, whole genome shotgun sequence.
ACCESSION   DANLXK010000217 DANLXK010000000
VERSION     DANLXK010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..396
                     /locus_tag="PXD88_002604"
     CDS             <1..396
                     /locus_tag="PXD88_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282119.1"
                     /translation="LFYFHKKKRKKVNKGVNMAEYGIQTFDTANVSTFSTNERLFKYI
                     GTKNIKYGKFSFTVTEKYEGQLVFIISMLHSVHRKQATGYKTNIPNLIHLENVSINDK
                     TISGEVVCIFPFSLPADDSDYIQIVYGAY"
     gene            397..996
                     /locus_tag="PXD88_002605"
     CDS             397..996
                     /locus_tag="PXD88_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282120.1"
                     /translation="MSYGLSTFNINENFRSLSLQRKGRANFSNKIATIQAASDEIIVI
                     KYSDGQVCLLYRENGIATLATENATFAEYLIFSTNVPKSGGYGIEVYNSAGNVVFSSN
                     HKFLRPIEYVDLNPSKNVFRFTGQANRQYGIILSNFGFDFVINYDNGYSTSRSAKVSG
                     NFIEFGFCKYHYSGLYKTGMSYNSKAMYFNALVVDITGY"
     gene            1111..1404
                     /locus_tag="PXD88_002606"
     CDS             1111..1404
                     /locus_tag="PXD88_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282121.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKHLKETGQIVV"
     gene            1565..1804
                     /locus_tag="PXD88_002607"
                     /pseudo
     CDS             1565..1804
                     /locus_tag="PXD88_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          719 a          345 c          379 g          632 t
ORIGIN      
        1 cttttttatt tccataaaaa aaaacgaaaa aaagtaaata aaggggtaaa tatggctgaa
       61 tatggtattc aaacttttga taccgctaat gtctctacat ttagtaccaa tgagcgatta
      121 tttaaataca ttggaactaa aaatattaag tatggtaaat tttcattcac ggtaacagaa
      181 aagtatgaag gacaacttgt atttatcatt agtatgttac attcagttca ccgaaaacaa
      241 gcaacaggtt ataaaacgaa tattcccaat cttattcatt tagaaaatgt ttcgatcaac
      301 gataaaacga tttcaggaga agttgtttgt atttttcctt ttagtctacc ggctgatgat
      361 tcagattata ttcagattgt atatggagca tattaaatga gttacggact atctactttt
      421 aacatcaatg aaaatttcag aagtttatcc ttacaaagaa aaggacgagc taacttttct
      481 aataaaattg caactattca ggcagcgtca gatgaaatta ttgtcattaa atattctgat
      541 gggcaagtat gtttgctata tcgagaaaat ggtattgcca cattagctac agaaaacgca
      601 acatttgctg aatatctcat ttttagtaca aatgtaccga aaagcggagg ttacggcata
      661 gaggtttata actcagcagg aaatgttgta ttttcatcaa accacaaatt tttaagacct
      721 attgaatatg tcgatctaaa tccatcaaaa aatgttttta gatttacagg gcaagcaaat
      781 aggcaatatg gcattatctt atccaatttt ggctttgatt ttgtcattaa ctacgataac
      841 ggatattcaa catctagatc tgccaaagta agtggtaatt ttattgaatt tgggttctgt
      901 aaataccatt attctggttt gtataagacg ggaatgagtt ataattcaaa agcaatgtat
      961 tttaatgctc tggttgtaga tataacaggc tattaaacat taaacgcctt catttaatag
     1021 aggcgaacta aaattctgat tacacattca tcgccgcttg tagcaataca agcggtcttt
     1081 ttttatcaac aatccacaaa aggaaaaatt atgacaactt ttaacaaaat cttaaaccca
     1141 atgtactcaa ctatcgcaag ttactcaact caagatgacg gctcactcaa tgctaagtat
     1201 gttgttggca caggtgatga taccgatggc gaggtaacaa actttgtaat catcacaagt
     1261 gagtacaaat atattgatgc tcaatcagcc aaagcgatta cagatgcacc gctaacaaaa
     1321 gaggatattg gcaaaacgcc aacgcagatt atgttaggtc gtatctataa gcacttaaaa
     1381 gagacggggc agattgtagt gtaggggtct aaatgcaaaa gcataaattt aagtttttca
     1441 gaggcgatga cgtaagttat cgcctttttt ttaggcaaac aaatggcgag cctgtaaatt
     1501 tagagggtat taggctggat ttacacgcca tagtagaggg cagcacagag cctcaaattg
     1561 agctaaccgt cgattagtgg ttgtggatga gcaatcatta aaactgcaag agttaaagca
     1621 gactattaat gagcaaaccg agcaaattaa aacactcgga acagtggtaa ataaacttat
     1681 tgatgcatta caacagtcac aaagtttaaa tgtaagatca gaatctgctg tagcagcaac
     1741 cgaaaatcaa gatcatttaa ctgatggtgt gcagtatcaa ggcccaggac gtgctagagc
     1801 ttaactctgt taacatctgc actcaaaacg gctatagctc tagccgtttt ttgtaatttt
     1861 tcgcacgttt taacaggcaa atttggcaaa attagccatt gtgattttat tttctataat
     1921 taagccccga gaggggcttt aaagtcagtg ctaatctatt gttaattttt taagaattga
     1981 tgataagtta gcttttttgg ctttaaccaa ttcggtcaaa tcagcccaaa ccccgaaagg
     2041 gattttacgt tcaccagcca cccattcgcg gacac
//
LOCUS       DANLXK010000218         1966 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.222, whole genome shotgun sequence.
ACCESSION   DANLXK010000218 DANLXK010000000
VERSION     DANLXK010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            268..966
                     /gene="aphA"
                     /locus_tag="PXD88_002608"
     CDS             268..966
                     /gene="aphA"
                     /locus_tag="PXD88_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL6282122.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1147..1908
                     /gene="udp"
                     /locus_tag="PXD88_002609"
     CDS             1147..1908
                     /gene="udp"
                     /locus_tag="PXD88_002609"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL6282123.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
BASE COUNT          623 a          345 c          419 g          579 t
ORIGIN      
        1 attattagag gagccatttt tattaagcga atatgatgcc tatcaattta cgaatgaggt
       61 gattaaattt cattcagaag aaagccttaa agcttgggga ggttgcttga tttgggaaca
      121 gaacaatggc tcataagcgt taagcgtaat cgtttgcttg tgatcatatt cacaaaataa
      181 ggtttttgta ttagctaaga gtgcctaata agattaaaat aggtatggtt aatcatatgg
      241 aggtatttta taaaatttac attaaaaatg acggcagcga caatgtttgc atctcttatt
      301 gctttttcag cacaagcagg cggaccaaaa gtagcttata cccagccggg aattgatatg
      361 cgaacacatg aagcacagca agcgccaatt cattgggtat ctattgagca aattaaagaa
      421 agcatcaaag atttaccccc tatggcggta agttttgata ttgatgatac tgttgctgca
      481 actagcggtt gcttccacta cggaaagcaa aaatattcgc cagacgattt cagctactta
      541 aaaaatcaag atttttggga cgaaattaat gctggctgtg ataaatattc tttgccaaag
      601 caagttgcta ttaatttaat aaaaatgcac caagaacgtg gtgatcaagt ttatttaatt
      661 acggggcgta ccgcaggtaa aaatgaacaa gttacaacga ttatgcaaaa gtatcttggt
      721 attaaaaata tgcaaccggt aaattttatg ggggggaaag cacattcaac aaaatatgat
      781 aaaacccctg cgattattga acataaggtg caaattcact atggtgacag tgatgatgat
      841 atcttagctg cccgtgaagc cggtattcga ggtattcgta tacttcgtgc agcaaattct
      901 aattatacgc cattccctca ggccggagga tatggtgaag aagttgttgt caattcaagt
      961 tattaatttc ttagtctgaa atatggccac cattgcgtgg ccatcatttt ttatttatat
     1021 aatgacgaaa ccgtttacct ttgatctagt tcacaaaatc aaactttgct tgcaaaaaat
     1081 tgtcgtaaat taaccgcttg ctaagataga atggctcata tccagttaga taaaaaggag
     1141 ataaaaatgt ctgaagtatt tcatttaggt ttaaccaaag ccatgctcaa aggtgcaaaa
     1201 attgcaatcg ttccgggcga tccggctaga agtgaacgta ttgccaaaaa aatggacaac
     1261 ccagagtttt tagcctcaac ccgtgaattt acctcttggt taggttattt agatggcgaa
     1321 ccggtggtgg tttgttcaac cggtattggc ggaccgtcgg tgtcgatttg tgtggaagag
     1381 ttagcacagt taggtgttcg cacattctta cgcattggca caacaggtgc aattcaagag
     1441 catattaatg taggcgatat tttaattacc accggagcgg tgcgtttaga tggtgcgagc
     1501 caacattttg caccaatgga atatcctgca gtagcgaatt ttgaatgtac taatgctctt
     1561 tatgcagcag cagtggaatc aggcgttaca ccttatgtgg ggattacagc ttcatcagac
     1621 actttctacc cggggcaaga acgttacgac actttcaccg gcaagatcta tcgtcatttc
     1681 caaggttcat taaaacagtg gcaagatctc aatgttatga attttgaaat ggaatccgcc
     1741 actctcttta cgatgtgttc ggcattaggc ttgcgagcag gtatggttgc tggtgtaatt
     1801 gtaaaccgca ctcaacaaga gattccgaat gaagcaacca ttcacgacac cgaacataaa
     1861 gccgtttcgg tagtagtgga agcggcaaga aaattaatta aaggctaatc tttaaattta
     1921 aaagcaaaaa aggtaaattg tctttgttac aatttacctt ttttct
//
LOCUS       DANLXK010000219         1955 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.223, whole genome shotgun sequence.
ACCESSION   DANLXK010000219 DANLXK010000000
VERSION     DANLXK010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..633)
                     /locus_tag="PXD88_002610"
     CDS             complement(<1..633)
                     /locus_tag="PXD88_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL6282124.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXD88_002611"
     CDS             complement(760..1353)
                     /locus_tag="PXD88_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL6282125.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..>1955)
                     /locus_tag="PXD88_002612"
     CDS             complement(1364..>1955)
                     /locus_tag="PXD88_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL6282126.1"
                     /translation="PPAGEPAPAEVVLNYLNSALVTLAVQLGERKPVGYSLKPWAKNI
                     TARIRESSVADCCQVVDYLVAKWGRDEKMREYLCPKTIFRQSNFADYFPKSTAWANNG
                     KPVCVNGKWVTPAELEKRLIMPTVDEVRALFQKSLSGNPFKALDFTNKRNLVMYHATI
                     NTRNKRPLERDLPMIISQEIKNAVERIDRLRVPTFS"
BASE COUNT          538 a          466 c          367 g          584 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg gggga
//
LOCUS       DANLXK010000220         1952 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.224, whole genome shotgun sequence.
ACCESSION   DANLXK010000220 DANLXK010000000
VERSION     DANLXK010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..377
                     /locus_tag="PXD88_002613"
     CDS             <1..377
                     /locus_tag="PXD88_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282127.1"
                     /translation="LMIEELGEVIYVTNEQCLESDFLPSMDEQDSFCKAGDLIIIDEV
                     WRIWGNDKDIPKNHRSFIAEHRHFADPITGVTCDLVVINQDISQIPRFIKEGLRQLTE
                     CKNTLVWGCVIVIGLMFFKERI"
     gene            308..871
                     /locus_tag="PXD88_002614"
     CDS             308..871
                     /locus_tag="PXD88_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282128.1"
                     /translation="MQKHVGLGLRNRYRVDVFQGKNLAKKNRTNSYQEKYDKKIFELY
                     KSYESDGAREAVTDSRQSIFSSFWVKVWIILLPLALFYCGYNLYIFLNGSESEVSHNT
                     EQAKFASDENHNDIVIHLLPTIGKPLSTKWRITGELKRDNKSFVILADNENRLRLEPS
                     SQFSFSGRMLQGEIDGGIVSYFSGESK"
     gene            868..>1952
                     /locus_tag="PXD88_002615"
     CDS             868..>1952
                     /locus_tag="PXD88_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HDL6282129.1"
                     /translation="MKIHQLGLLLMISSFSYAKNVDFKLEAVPLPKAISIIYDEVLQK
                     PYMLDPKLSNDSRVISFHTTEQQNFEQFIQRYFSNMNISVSEKKGVVYIGHIEPKQPK
                     VIKRSFVYSPIHRDVDYLASFLKDGTEGNQVFASGDKLVYYGTSEDIARVKSILKSID
                     TKSREVVVTGYVFEVQNIEKEGSGINLLAKLLSGKLGISVGYKQSYENFITVNAGNLD
                     AMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPVLSNVTYQDGRPIQSIEYRSS
                     GVIFDIQPTIKDKAIDLKIQQLSNFIKTDTGVNNSPTLVKRDLVTDVTVKSGDVIVLG
                     GLAENKISNGETSFSLLPKGWLSGKSN"
BASE COUNT          668 a          271 c          405 g          608 t
ORIGIN      
        1 aattaatgat tgaagagctt ggtgaagtca tatatgtaac gaatgaacaa tgcttggaat
       61 cggatttttt accatcaatg gacgaacaag attcattttg caaagctggg gacttgataa
      121 ttattgatga agtttggcgt atttggggaa acgacaagga tattccaaaa aatcatcgtt
      181 catttattgc tgaacatcga cattttgcag atcctataac aggtgtaact tgtgatttag
      241 tcgtaataaa tcaagatatt tctcaaattc caagatttat taaagaagga ttgagacaac
      301 ttaccgaatg caaaaacacg ttggtttggg gttgcgtaat cgttatcggg ttgatgtttt
      361 tcaaggaaag aatttagcta aaaagaaccg gacaaattct tatcaagaaa aatatgataa
      421 aaaaatattt gagctttata aatcttatga atctgatggt gcaagagaag cggttacaga
      481 tagtaggcaa tctatatttt catctttttg ggtcaaggta tggattattc ttttaccatt
      541 ggcattattt tattgtggct ataaccttta cattttccta aatggttcag agagtgaagt
      601 aagccataat actgaacagg ctaaatttgc ttctgatgaa aaccataacg atatagtaat
      661 tcatttactt cctactattg gaaaaccttt atcaactaaa tggcgaataa caggggaact
      721 aaaaagggat aataaatcat ttgtgatctt agctgacaat gaaaaccgtt taagacttga
      781 gcctagtagc cagtttagtt ttagcggtcg aatgttgcaa ggagagatag atggtggaat
      841 agttagttat ttttcgggag aatctaaatg aaaatccatc aattagggct attgctcatg
      901 attagctcat tttcttatgc taagaatgtt gattttaaat tagaagctgt gccgttaccg
      961 aaagcaatat caataatata cgatgaagtg ctacaaaagc catatatgct tgatcctaaa
     1021 ttatctaatg attcaagggt tattagcttt catacaacag agcaacagaa ttttgagcag
     1081 tttattcaac ggtatttcag caatatgaat atcagtgtat cagagaaaaa aggtgttgtt
     1141 tatattggac atattgaacc aaaacagccg aaagtaataa aacgtagttt tgtgtattcg
     1201 cctattcatc gtgatgttga ttatttggct agcttcctga aagatggaac agaaggaaac
     1261 caagtttttg caagtggcga caagcttgta tattatggta cttctgaaga tattgcacga
     1321 gtgaaaagta tcttgaaatc aatcgacaca aaaagccgtg aagtagtggt aactggttat
     1381 gtttttgaag tgcagaatat tgaaaaagag ggtagtggca taaacttgtt agcgaaattg
     1441 ctatcaggaa aattaggcat tagtgttggt tacaagcaaa gttatgaaaa ctttatcacc
     1501 gtgaatgcag gaaatttaga tgcaatgttt gaattgtttc gcacagatca gcgttttagg
     1561 gttgtcagca gtccgacatt aagagtaaaa tcaggctcaa gaggtaattt ttcagtaggc
     1621 tctgatgtcc ctgtattatc gaatgtaacc tatcaggacg gaaggcctat tcagtcgatt
     1681 gaataccgtt caagcggtgt aatatttgat attcagccaa cgataaaaga taaagcgatt
     1741 gatttaaaaa ttcaacaact atcaaatttc atcaaaacag ataccggtgt aaataatagc
     1801 ccaacgttgg taaagcgtga tctggtaaca gatgttacgg ttaaaagcgg tgatgttatc
     1861 gttttaggtg ggttagctga aaataaaata tctaatggcg aaaccagttt ttcattgcta
     1921 cctaaaggtt ggttaagtgg aaaatcaaat ga
//
LOCUS       DANLXK010000221         1931 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.225, whole genome shotgun sequence.
ACCESSION   DANLXK010000221 DANLXK010000000
VERSION     DANLXK010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1642
                     /locus_tag="PXD88_002616"
     CDS             <1..1642
                     /locus_tag="PXD88_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL6282130.1"
                     /translation="DLNADTSQAFLNELDQTLWTAADKLRKNLDAANYKHIVLGFIFL
                     KYISDSFTDFQAKLKTQLTTPESELYLDPALFDEQEFSQILAEELEQRDYYAAENIFW
                     VPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAG
                     FGVPDEMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGG
                     QYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNRNAISVYGQES
                     NSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESL
                     ANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGDIRKNIV
                     QADLVEAMIALPNQLFTNTQIPACIWIINKAKARKGEVLFINATQIGYLKDRVLRDFT
                     ADDIAKISDTYHNWQKQNGYENIPAFCYCATLDEIAKNDFVLTAGRYVGAVQEENDGV
                     PFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI"
     gene            1632..>1931
                     /locus_tag="PXD88_002617"
     CDS             1632..>1931
                     /locus_tag="PXD88_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6282131.1"
                     /translation="MAFNQYVFSDIVELISEKIKIKDLKKENYISTDNMLPNFGGITL
                     AENLPNSASCNRFAKKDILFSNIRTYFKKVWLAEFSGGCSPDVLVMRSKNTDILLN"
BASE COUNT          590 a          478 c          400 g          463 t
ORIGIN      
        1 tgatctcaac gctgacacaa gtcaagcctt tttaaacgaa ctcgaccaaa ccctctggac
       61 tgccgccgac aaactgcgta aaaacctcga tgccgccaac tacaaacaca tcgttcttgg
      121 ctttatcttc ctaaaataca tctccgacag ctttaccgat ttccaagcca agctaaaaac
      181 ccagcttacc acccccgaaa gcgaactcta tcttgaccct gcactatttg acgaacaaga
      241 atttagccaa attcttgccg aagagttgga acagagagat tactacgccg ctgaaaacat
      301 cttttgggtg ccggagcaag cccgctggga caacatcaaa tcattaagca aactcaatct
      361 tggcgatgaa ttgccttggg gagacaaatt taaaggtgtc agccgcttga ttgatgatgc
      421 ctttgaagcc atcgaacggg aaaaccccaa actcaaaggc gtactccaac gcattgccgg
      481 ctttggcgtg cctgatgaaa tgctcacagg cttaattgac ctgttctcac gcaccaattt
      541 cacccagcct atgcacaatg gcgaacctgt gcatctgcaa gccaaagaca ttttagggca
      601 cgtctatgaa tactttcttg ggcaatttgc ccttgccgaa ggcaaaaaag gcggtcaata
      661 cttcacgcca aaatccatcg ttaccctgat tgttgaaatg ctcgaaccct attcagggcg
      721 gatttacgac ccagctatgg gcagcggcgg cttttttgtg caagctgacc gctttattca
      781 ggctcacgca ggcaaccgca acgccatttc cgtttatggg caagaatcca actccaccac
      841 tcgcaaactg gcggtgatga atatggcgat tcgtggtatt ccctttgact ttggcgacaa
      901 gcccgaagat accctactaa accctttgca catcgacaaa aaaatggatg ttgtgatggc
      961 aaatccgccc tttaaccaaa aagagtggtg gaatgaaagc ctagcaaacg atccacgctg
     1021 ggcatacggc acaccgccgc aaggcaacgc caactttgcg tggttgcaac atatgattta
     1081 ccacctctcc cccaaaggca aaatggcact cctgctcgcc aacggctcaa tgagcagcca
     1141 aacttcaggc gaaggcgaca ttcgcaaaaa catcgtgcaa gctgaccttg tcgaagcgat
     1201 gattgccctg cccaatcagc tattcaccaa cacccaaatc cctgcctgca tttggattat
     1261 caataaagcc aaagccagaa aaggtgaagt gctgtttatc aacgccaccc aaataggcta
     1321 cctgaaggac cgcgtcttgc gtgattttac cgctgatgac atcgccaaaa tcagcgacac
     1381 ctaccacaac tggcaaaaac agaacggcta cgaaaatatc cctgcgtttt gttattgtgc
     1441 cacgctggac gaaatcgcca aaaacgattt tgtgctgacc gcagggcgat atgtcggtgc
     1501 ggtacaagaa gaaaatgacg gcgtgccgtt tgcagaaaaa atgcaggaat tgaccgcttt
     1561 attgaatgaa caatttaaac aagggcggga attggaacag caaatcgcag agaatttaaa
     1621 ggggttggga tatggcattt aatcagtatg tattttcaga tattgttgaa ttaatatccg
     1681 aaaaaataaa aatcaaagac ttaaaaaaag aaaactatat ttcgacagat aatatgctgc
     1741 ctaattttgg tggaataaca cttgctgaaa accttccaaa ttcagcttct tgcaataggt
     1801 ttgccaaaaa agacattttg ttttccaata taagaaccta ctttaaaaaa gtttggcttg
     1861 ctgaattttc aggtggttgt tctcctgatg ttctggtaat gcgcagtaaa aacacagata
     1921 ttttattaaa t
//
LOCUS       DANLXK010000222         1921 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.226, whole genome shotgun sequence.
ACCESSION   DANLXK010000222 DANLXK010000000
VERSION     DANLXK010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            121..369
                     /locus_tag="PXD88_002618"
     CDS             121..369
                     /locus_tag="PXD88_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282132.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
     gene            381..584
                     /locus_tag="PXD88_002619"
     CDS             381..584
                     /locus_tag="PXD88_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282133.1"
                     /translation="MKIQFPISYQEFRENYFEKKPLLMKGAISQKDLLSWKSINEILP
                     RCDLISEDAIKVMHKGKRAHKKD"
     gene            623..1265
                     /locus_tag="PXD88_002620"
                     /pseudo
     CDS             623..1265
                     /locus_tag="PXD88_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611451.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            1271..1609
                     /locus_tag="PXD88_002621"
     CDS             1271..1609
                     /locus_tag="PXD88_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282134.1"
                     /translation="MYYSPKDYLEEYNDLGTIRYKFQEENLYGFLRDGATLVANGIVN
                     EPSVDCFSQEIAQFTGCHIFSSLYIAFNTQRSFKSHWDSRDIFAVQMQGKKRWIIHTP
                     TFKKTIVYAS"
     gene            1599..>1921
                     /locus_tag="PXD88_002622"
     CDS             1599..>1921
                     /locus_tag="PXD88_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL6282135.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAEYIKD
                     KENYH"
BASE COUNT          628 a          282 c          427 g          584 t
ORIGIN      
        1 tcatagagga atatctctta tgaaagagtt aaaaattgag gattgccaat ttgtttcggc
       61 aggcttgcac ttgttattgt aggagctgtt gctggagctg catattatgt tgggaatggt
      121 atgatttctg gggaaaaaat gacttgggag agtttgggag catcagctat aggtggggct
      181 attggtggcg gtattggagc aacaatgaaa gctggtgcgg tgacagcgtc aaccttatct
      241 gctttaggtg gtggtatggg ggagggcttg tataaaagta cttctcaagg tatcaaaaat
      301 agtattggta taaaggcgag ttgcaatcaa tcaggttcgg attatggtga tggatgtgat
      361 tatcaataag agagtatatt atgaaaattc aatttccaat ttcttatcaa gaatttcgtg
      421 aaaactattt tgagaaaaaa ccacttttaa tgaaaggagc aatatctcag aaagatttac
      481 tttcttggaa gtcaataaat gaaatattac ctcgctgtga tttaatttct gaggatgcaa
      541 ttaaggtaat gcataaaggg aaaagggctc ataaaaaaga ttaggggctg tagtagatta
      601 gcatcactgc tatactacaa aaatgaagat aacccattgt aaattaaaga aatctttgca
      661 gaaaaagctt cttgaatttt ttgttgctga agtgaccgct agaaccgctg ctgatttatt
      721 aggtattcaa cccaatacgg cagccctgtt ttaccacaaa attaggctgg tcattgaaca
      781 ccatttagcc cttgaagctc atgaaatttt tgagggaaaa attgaggtag atgaaagcta
      841 ttttggtggt catcgcaaag gaaaacgagg gcgaggtgcg gctgggaaag tcgctgtatt
      901 cggtttgttg aagcgtcaag gaaaggtgtt tacaaaatac caaatcagaa acgctaatgc
      961 cggttattac aaggaaaatc aagcttgaca gctgggttta tacggatacc tatcgtagct
     1021 atgatgccct tgatgtgagc gaatttcatc acgagcgaat caaccattcc gaactgtttg
     1081 cggagaaaca aaaccatatc aatggcattg aaaatttttg gaatcaagcg aagcgagtac
     1141 tccgaaaata taacggaatt aaccgaaaaa atttcccttt attcttgaag gaatgtgaat
     1201 ttcggtttaa ctttggtaca ccaaaagaac agctcaaaac gttgcgaaaa tggtgtgaga
     1261 tttagggcta atctactaca gccccaaaga ttatttagaa gaatataatg atctaggtac
     1321 tattcgttat aaatttcaag aagaaaattt atatggtttt ttaagagatg gggcaacatt
     1381 agtcgcaaat ggtattgtaa atgaaccaag tgttgattgc ttctctcaag agatagctca
     1441 atttacaggc tgtcatattt tttcaagttt atatattgcg tttaatactc aaagatcttt
     1501 taaaagccat tgggatagtc gtgatatttt tgcagttcaa atgcagggta aaaagcgttg
     1561 gattattcac actccaacat ttaaaaaaac cattgtttat gcatcgtagt aaagatatgc
     1621 ctgaatatgc tcctaatctt gatgatgtat atatggatat tgtattagaa gctggagatg
     1681 ttctttattt acctcgtggc tggtggcacg atcctattcc tgttggagaa gaaactgtgc
     1741 atttagctgt aggcattttt cctgcttata ctcataacta tctgacttgg gtatctcaaa
     1801 atatggttga gaaagaaatt gcccgagctt ctttatcgca ttatgagtca gataaagagt
     1861 tgatagcaca gttggcagaa caaacagcag aatatattaa agataaagag aattatcata
     1921 a
//
LOCUS       DANLXK010000223         1910 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.227, whole genome shotgun sequence.
ACCESSION   DANLXK010000223 DANLXK010000000
VERSION     DANLXK010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(79..843)
                     /locus_tag="PXD88_002623"
     CDS             complement(79..843)
                     /locus_tag="PXD88_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6282136.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
     gene            complement(812..1291)
                     /locus_tag="PXD88_002624"
     CDS             complement(812..1291)
                     /locus_tag="PXD88_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL6282137.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
BASE COUNT          540 a          372 c          357 g          641 t
ORIGIN      
        1 cgtaatttaa actcagaaag gttattcata tttgtacacc tctaattaaa caagcggtca
       61 aattccgcca aaaatttact aaatccccgt tgagcagctt tctacataat ccgcccattg
      121 ctgcattaca tctacacgct gatctaaata atcagaacgg ttataagcct ttcgggtttg
      181 gtctttgata acgtgagcta aacaagcctc tactacatca taattgacta actgctcatt
      241 caaataggtt gaggcaatag accgcatacc gtgagccgtt agagtgccgg catagcctaa
      301 taagcctatg gctctgttgg cggtttggct gttcatcggt tggcgtggtt tcatttcgct
      361 ttgaaaaaca aatgggctat tccctgtgat ttttcgcatt ctttctaaaa tttcgaccgc
      421 ttgccgtgaa agagggataa cgtgagggcg tttcatcttc attctttcgg ctgaaatggt
      481 ccacgttttc gcctctaaat caatttcact ccacaacgtt tcgcttgcct ctcgtgagcg
      541 tgtcattgtt aatagttgcc atttaatcaa catcttagtt tgaaatgata ggttgtaatc
      601 acgcaatgca gctaaaaatt gaggtagctc ttttgggtgt atcgttgggt tatgttcaga
      661 tttcgctacg ctaaaatttg agcctacatt ttggcatttg ttaaactcga taacgtccgc
      721 atttaccgca aaattcatca cttcattaag tagcctaatt gctcgtttaa gggtgtcgcc
      781 tatgcctttt tctttagcag gctctaaagc attaataact agttttggcg tgatgtttgg
      841 aatagagtag tcggcaaggc aaaagatact tttcaaggat tcgccaattc ttcttcagcg
      901 ttaaggcttg aagttcgcca ttttttacac ggctttcgca tttatcacgc catttcaagc
      961 agactttata aaaggtgttt tctatttcgg ctaacgcttc agcctctaat ctttggcggt
     1021 gttcgagtgg gtcgatattt tccgctagta atgccctata ttcttctcta atcgttcttg
     1081 cttgggctag ggtagtttcg gggtaactgc ctatgcctaa atcgctctct ttgccggtaa
     1141 tcggcttttt atacctaaac cgccataact tcgagccgtt tttcttaacc agcaaaaaca
     1201 gccccttgcc gtccattagc ttgtagtctt tggtttgagc ctttgcgttt ttgatttgag
     1261 tgttatttaa ttctgtggta actctagcca taaaaattta cctaaaatcg cattgtgctt
     1321 tatcagaatc ataagggatt taagggtatg ggtttcatac ccttttacgt tataccctca
     1381 aatataccct taaaataagg ggatgtaaac gcaagaacac gaaagaatac gaatgaagaa
     1441 ataatttaaa attgctctaa agccagtatc atcaatggtt ttgcgtaaga atgcgaatga
     1501 agaaataaga gtggaaaatt taagttggtc ccagcctcct ctgaactcgc ttataactta
     1561 ttgatttata aagagataaa ataaactcta caaaaatagg gatcatttta gggatcattt
     1621 acataaaagc tatttatttt cgtttataaa atgttcattt gtgcggctag gttggtttgt
     1681 ctttcctagt tgcatttcta ttctattatc agcaactatt cagcccttca gcaagatttc
     1741 atttttcata catcagcata aaaatatttt ttctgtgctt gggtaaaatg tttagggaaa
     1801 atagggaaaa tagggaaaat agggaaaata gggaaaattt acaaaaaaca taataatatc
     1861 aaatagttaa aaaattccac tttccctaaa atgccccgaa ttttccctat
//
LOCUS       DANLXK010000224         1817 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.228, whole genome shotgun sequence.
ACCESSION   DANLXK010000224 DANLXK010000000
VERSION     DANLXK010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(46..397)
                     /locus_tag="PXD88_002625"
                     /pseudo
     CDS             complement(46..397)
                     /locus_tag="PXD88_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596652.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(394..636)
                     /locus_tag="PXD88_002626"
     CDS             complement(394..636)
                     /locus_tag="PXD88_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL6282138.1"
                     /translation="MYGINLNLNEKSSQTQNARILAHLQNGGRITSLSALDDFGCLRL
                     SARIKDLRDRGHDIQSVFITVPNGKKVKQYFMECAK"
     gene            complement(793..1026)
                     /locus_tag="PXD88_002627"
     CDS             complement(793..1026)
                     /locus_tag="PXD88_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL6282139.1"
                     /translation="MEELKAYLNSLTTKEQESFALRCNTTVGYLRKSISRNSRLGAEI
                     CVAIERETKGLVTRKHLIEDWHLRWPELANDKQ"
     gene            1155..>1817
                     /locus_tag="PXD88_002628"
     CDS             1155..>1817
                     /locus_tag="PXD88_002628"
                     /inference="COORDINATES: protein motif:HMM:NF012920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6282140.1"
                     /translation="MNELRLLRQKKLKRLIDEVSEGNIADFARKIGKEPSYVARMLYP
                     SDKAGAKPIGEKMALHICHKFVLPLDWFNRDDDGEFIQINNGEEDNIILSVLNIQASA
                     GIGAKNGDVMEVIREIKFNPEQFYNLFRGITPEHIELISVKGDSMEPTFSHGDLLFVD
                     VTIQEYDGDGVYVFTCDDYIFVKRIQKTGRHFTILSDNDRYKPWQLDQEIYIHGKVKV
                     HQS"
BASE COUNT          576 a          333 c          330 g          578 t
ORIGIN      
        1 tatttgtcgg atttaaatcc gagctttttc ggatctgttt ccgagctaac tcggatttat
       61 ttccgagtgt cggatttaaa tccgagttaa actcattcca agtcttccct ttttcagtta
      121 atcgaataag gtctttatct ccgtgttttt gatacacgat caaccctttt ttgtgaaact
      181 cgacaaaatg gcgatagacg gtatcaggct ttgagtaaaa caaaggtagt tcttcgatca
      241 ccgcattacg ggaaacccag taataaacca cgccatcaat aatgatttct ttcgcccaag
      301 caggagcttg attcagtaaa tcaaataatg ctccttgatt agcatttaag ttccattcaa
      361 ggcattttgc attgttgatg taagtgctaa atctcatttc gcacactcca taaaatactg
      421 cttcactttc ttgccattcg gcactgtaat aaatacgctt tgaatatcgt gaccacggtc
      481 acgcaaatct ttaatgcgag cggataaacg caagcagccg aaatcgtcta acgcagaaag
      541 cgaagtaata cgaccgccat tttgaagatg tgccaaaatt cttgcatttt gggtttgact
      601 tgatttttcg tttaggttaa gatttatccc atacatatag gaaacctcct tagtaattag
      661 ccaccgttac agcggtggtt tttttaattg ttaaaaaccc accacgcaag cagcataaaa
      721 attgccactc taataaaaat tgaattttta ctgtggtaga atgatttgag ttttttagaa
      781 aaaactttcc ctttattgct tgtcatttgc caattccggc cagcgtaagt gccaatcttc
      841 aattaaatgc tttctagtaa ctaaaccttt tgtttcacgc tctatcgcaa cgcaaatttc
      901 cgcacctaat cgagaatttc ttgagatcga ttttcttaaa tacccaactg tcgtattaca
      961 acgcaaggca aaactctctt gctcttttgt ggttaaagaa ttgaggtatg cttttaattc
     1021 ttccattgtg agtcctcttt taaaaacgcc aaaataatac cattaggtaa aaataatatc
     1081 aataccattt ggtttgttta ccttttagta aataagagta caattactaa aaagtaatcc
     1141 ttagaggagg ttatatgaat gagttgagac ttcttagaca aaaaaaattg aaacgcctaa
     1201 ttgatgaagt gagtgaggga aatattgctg actttgcaag aaaaataggt aaagagccta
     1261 gctatgtagc aagaatgttg tatccgtccg ataaagctgg agctaagcct attggtgaaa
     1321 aaatggcact ccatatttgc cataaatttg tgctacccct tgattggttt aatcgagatg
     1381 atgacggcga atttattcaa atcaacaatg gtgaggaaga taatatcatc ttaagtgtat
     1441 tgaatattca agcatcggcc ggtataggag caaaaaacgg tgatgtgatg gaagtcatta
     1501 gagaaattaa attcaatcca gaacaatttt ataacctatt tagaggtatt acgcctgaac
     1561 atatcgagct gatcagtgta aaaggcgatt ctatggagcc aacattctca cacggtgatt
     1621 tgctttttgt tgatgtaact atccaagaat acgatggcga tggtgtgtat gtttttactt
     1681 gcgatgacta tatttttgta aaaaggattc aaaaaacagg cagacacttt actattttat
     1741 ctgataatga ccgctataaa ccttggcaat tagatcaaga aatttatatt cacggcaaag
     1801 ttaaagtcca ccaaagc
//
LOCUS       DANLXK010000225         1748 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.229, whole genome shotgun sequence.
ACCESSION   DANLXK010000225 DANLXK010000000
VERSION     DANLXK010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..693
                     /locus_tag="PXD88_002629"
     CDS             <1..693
                     /locus_tag="PXD88_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282141.1"
                     /translation="NGALIKEPRNPLIYHRHSWHLEFDGSVLYIADPTLFKYESINLA
                     WYVGDKDTDLYPYLAEFVTSVATHLNVETDHIVTYGSSGGGFAALQLGARIGNGVVTV
                     CINPQTNIMKYVPSHRNAFLNACFDFNAEEYDSLSNQEKFNALVLLKENTSKILYIQN
                     TQDEFHHKWHFLPFLELKGIDLSEIEKTHWREQQSKDVKVILYSHESGHAAEPKEMIP
                     EILSAVDQLIAS"
     gene            695..1690
                     /locus_tag="PXD88_002630"
     CDS             695..1690
                     /locus_tag="PXD88_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6282142.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQIQKVVYR"
BASE COUNT          576 a          283 c          320 g          569 t
ORIGIN      
        1 aatggtgcat taatcaaaga acccagaaat cccttaattt atcatagaca tagttggcat
       61 ctagaatttg atggctcagt tctatatatc gcagatccaa cattatttaa atatgaatca
      121 attaatttgg cttggtatgt tggagataaa gatactgatt tatatccata cttagctgaa
      181 tttgtaactt ctgttgctac acatttgaat gttgagacag accatattgt tacttatggt
      241 tcaagtggtg gtggatttgc tgcattacag ttgggagcaa gaattggaaa cggtgtagtt
      301 accgtttgta ttaatccaca aaccaacatc atgaaatatg taccaagtca tcgtaatgcc
      361 tttttaaacg cttgctttga ctttaatgcg gaagagtacg atagtctttc taatcaagag
      421 aaatttaatg ctttagtatt acttaaggaa aatacatcaa agattttgta tattcaaaat
      481 actcaggatg aatttcatca taaatggcat ttcctcccat tcctagagtt aaaggggata
      541 gatctatcgg aaatagaaaa gacccattgg agagaacaac agagcaaaga tgtaaaagtt
      601 attttgtatt ctcatgaatc aggtcatgca gctgaaccta aggaaatgat tcccgagata
      661 ttatccgctg ttgatcaact gatagctagc taaaatgctg ttttatttgg tatctgattc
      721 tttaactagg ctttcattat caaatgaaag cctagttgat cttggaagaa taacatctat
      781 aggaaattat cctttcttgc ataatgcaaa gaatgctaaa tttcttatgg tcgaatccgc
      841 ctggcaaggc tacaaaaacc gttggaaata taaaattgcc tcttatcctg ataatcctga
      901 acgaaccaat gaaaagttgg ttcgtttagt agaaaaagcg aaggataaag gcattccaac
      961 ggtcttttgg aacaaagaag attctgtgca ttttgatcga tttattgatt cggcgaagca
     1021 ttttgatcat atttttaccg tagatcaaaa tgccattgct cgttataggg aagtagtgcc
     1081 tgcgacaaca accgtcaatg tcggaatgtt ccctgttcag cccaaaatcc ataactttca
     1141 aggatttaat tttaaacacc ttgccgcaaa ttttgtaggg agttacagtc atcatatcca
     1201 caataagcgt agagaaagac aggatatgtt gtttggtgca gcacttaaag caggtcttcc
     1261 ggtaaccatc tttgatagaa actctgatag aaaatcggaa aattatcgtt acccaaaaaa
     1321 tagctttaat ttaaatgttc aacctaatgt tagttatact gaaactgcta atatttatcg
     1381 tgattatctt gtttctttga atattaatac tgtcgaagat tcccctacga tgttttctcg
     1441 cagagtcgtt gaaatattag cttgtggagg aatattagtc tctacaccaa gtatggctat
     1501 cgacaatata tttaaagaat attgtcatat cgtacaaagt gaagatgagg ctatagaatt
     1561 attccaacgt ttaaaacgag gtgcttctcg tgatgatttg aataaagcga ttgcaggctc
     1621 tgaatttgta ttgagtaact ttacttggga acatttctta tcccaaatac agaaagttgt
     1681 atataggtaa cttaaatagc attattaaaa actctctgcc aagaaattat tttctatttc
     1741 gagtaatt
//
LOCUS       DANLXK010000226         1662 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.230, whole genome shotgun sequence.
ACCESSION   DANLXK010000226 DANLXK010000000
VERSION     DANLXK010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..516
                     /locus_tag="PXD88_002631"
     CDS             <1..516
                     /locus_tag="PXD88_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL6282143.1"
                     /translation="VVLLISSSLVLDKELLDGYSDKVKVVTLSEFNLKNYLDDEVSYT
                     YFTDDNVLNYRNSIYGLVATLNYCNTEAVTRRLYYKLSSLNKIMDFSITQEDWYRSVT
                     ETQRNCVLIKNSAIEDYSINLTANKIQAKNSPIFIADPFNVLYIDDKKLLKGRDSLLK
                     LVYKTSPYLGV"
     gene            518..1585
                     /locus_tag="PXD88_002632"
     CDS             518..1585
                     /locus_tag="PXD88_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282144.1"
                     /translation="MKFILFDSILERHLGESLKRALESLGHQAVFTDLILHGHSMIYK
                     QADIDFMWKKVKDICDEKADMFISFRPMNLTTEMLEYIGKRMKTAIWLSDDPVLYKTC
                     YSQVVNHYDVLLHCGYKEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAF
                     LGNMNGQVRRKRYMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKA
                     KVGVSIPQFFTEYNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYP
                     EIFVGNSITELEPYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDK
                     LQSQTTQERAILFTKYKAQYN"
BASE COUNT          566 a          229 c          298 g          569 t
ORIGIN      
        1 gttgtattac ttatttcatc ttcacttgtt ttagataaag aattattaga tggttattcc
       61 gataaagtga aagtagttac tctttctgag tttaatctga aaaactattt agatgatgaa
      121 gtttcttaca cttatttcac cgatgataat gtcctaaatt atcgtaattc tatttatgga
      181 ttggtagcaa cacttaatta ttgtaataca gaagcagtaa ccagaagatt gtactataaa
      241 ttatcatcat tgaataaaat aatggacttt tcaattactc aggaagactg gtacagaagt
      301 gttacagaaa ctcaacgtaa ttgtgtttta attaaaaata gtgctattga agattattca
      361 atcaatctta cggccaataa aattcaggct aaaaattcac ctatctttat agctgatcca
      421 tttaatgtgc tatatataga tgataaaaag ttattgaaag gtagagattc cttacttaaa
      481 ttggtttata agacttctcc atatttaggg gtttaatatg aagtttattt tatttgattc
      541 tattttagaa cgtcatttgg gcgaaagttt aaaaagagct ttggagtcgt tagggcatca
      601 agcagtattt acagatttaa ttttgcacgg ccattctatg atttataaac aagcggacat
      661 agatttcatg tggaaaaaag taaaagatat ttgtgatgaa aaagcagata tgtttatctc
      721 atttcggccg atgaatctaa cgacagaaat gcttgagtat ataggcaagc gaatgaagac
      781 cgctatttgg ctttcagatg accctgtttt atataaaact tgctattctc aagtagtaaa
      841 tcattatgat gtattattac attgcggata taaagaagtt atggattttt atgaagctaa
      901 taaccatcca aaaggcttta attttccgtt ttggacagat catgtagcat ttccaagtgt
      961 atataacccg cttcattctg attatgagat tgcattttta ggtaatatga atgggcaagt
     1021 tagacgcaaa agatacatgg aattggcttc attaccattt accaaaaaag tattcggttt
     1081 aatagattca gatccattag caatgcatgg tggatttatc aatgaagcat atttacatac
     1141 aaaacgtgta acagaggttt tatctaaggc aaaagttggg gtgagtatcc cacaattctt
     1201 taccgaatat aatggtttag attatgatta tcctgaattg gcgggtttag gatatttcca
     1261 atttcctagt cgagttatcc aatatgctgc aagtgggtta cctattgcag cggttggtga
     1321 tgagagaatg aaggaagttt atcctgaaat ctttgttggc aatagtatta cagagctgga
     1381 gccgtacatt aaacaaattt gtgaagatta tgattttgca ctatcagaat cggctaaaat
     1441 tctaactaga tttagaaaga actattctgc cttatcccgt gccatgatgt tgattgattt
     1501 ggtagaaaat ttagacaaac tacagagcca gacaacacaa gagcgcgcaa ttttatttac
     1561 taaatataaa gctcaataca actaggagta aactttatga atattaaaga cttacttaaa
     1621 gagatcagct ttaaagctgt aattaatgat cttaattttt ca
//
LOCUS       DANLXK010000227         1579 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.231, whole genome shotgun sequence.
ACCESSION   DANLXK010000227 DANLXK010000000
VERSION     DANLXK010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            149..1480
                     /gene="pcnB"
                     /locus_tag="PXD88_002633"
     CDS             149..1480
                     /gene="pcnB"
                     /locus_tag="PXD88_002633"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL6282145.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
BASE COUNT          477 a          310 c          373 g          419 t
ORIGIN      
        1 gtcggctcag aaaaatgaaa aggtagagag tgaaaaaaga gcggaaagag aacccaaaac
       61 ttcccgttct aaacgcccag ccccgaactt aacggaccaa aagacttata gaggtgggaa
      121 gaaacaacaa gataatcctc cctcccattt gttacacaag aaatttgcgg tgaatgccag
      181 ccaatataga attagcccga aggattttcc taaaaatgcg atttcgattg tcgataaatt
      241 gcagattgcc ggttatgaag cttatattgt gggtggctgt attcgagatc tactcttgga
      301 gaaaaagcct aaagatttcg atattgcgac taatgcgaga cctgaagaaa ttcagcgtat
      361 ttttggtagg caatgccgat taatcggacg tcgtttccgt ttggcacaca ttgtttacgg
      421 gcgtgaaatt tttgaagtgg cgactttccg tgcaggacac gaatctcatc gcaatgacaa
      481 aatttctaaa gtcagcgatg aaggaatgct actgcgtgat aatgtttacg gcacgctccg
      541 tgaagatgca gagcgccgtg atttcaccgt aaacgcctta tattacgata taaaacgcaa
      601 tcttattttt gatttcttca acggtattga agacttacga gcaggtaaac tttcgcttat
      661 cggagagcct actattcgtt accaagaaga tccggtgaga atgttgcgag ccgttcgttt
      721 tatggcgaag ttggatatgt tcttggataa agccacggcc tccccaattc gggatatggc
      781 ggtgttgtta accaacattc cggcagcccg tttgtttgac gaatcactca aattattaca
      841 aaccggtgca gggctgaaaa cttatcagct tttgcgtgaa tatgaactat ggcaattctt
      901 gtttccggta ttgccggcat tttttactgc caaaggtgat tcctatgccg aaagaatgat
      961 taccaaagcg ttaaattcaa ctgatgagcg aattgccgat aaattaccgg taaatcctgc
     1021 gtttttattt gctgcactac tttggtatcc gctccgggag aaaatggagc agcttaaaaa
     1081 cgaaggtggc ttcaacagct acgatgcaat gatgctggca gcaaatgatg tgctggcgga
     1141 aagttgcaac gcgattgcgt tgcaccgcag acacacttca gtcattcgag atatttgggc
     1201 attgcaattt cagatgatga aacgaagtgg caaccgaccg caacaaaccc ttgaacacgt
     1261 caaattccgt gcagggtttg atttattagt gatgcgtgca gaaattgaag gcggcgattt
     1321 ggtcgaactt tccgcttggt ggcacgaata ccaatttagc aatgaaggtc agcgtactga
     1381 attgctgaaa tcggttcgtc atttaggcaa tgtgcctagc gagaaaaaga aaacacgccg
     1441 ccgtagaacc tttaagaaaa aaccgaaagt aaatggataa ttaatatatt tccctctccc
     1501 cttgtgggag agggagcgat ttttcttcgt tcagaagaaa aatcagggag aggggaaatg
     1561 tgtaaaaaat ttaataaaa
//
LOCUS       DANLXK010000228         1500 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.232, whole genome shotgun sequence.
ACCESSION   DANLXK010000228 DANLXK010000000
VERSION     DANLXK010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(43..1116)
                     /locus_tag="PXD88_002634"
     CDS             complement(43..1116)
                     /locus_tag="PXD88_002634"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL6282146.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEPMIKAGLAK"
BASE COUNT          449 a          280 c          298 g          473 t
ORIGIN      
        1 atgctcactt aagtttgaaa tatttttaat aaaaaatgca atttattttg ctaatccggc
       61 tttaatcatc ggttcaaaaa agtcataatc aaccaaaaag gcatcgtgtc cgaaatcgga
      121 gtgaaactcg tggaactcca aatttacgcc tgcctgttct aatttttgtt tgctcttata
      181 cacgtcaact tgcttgaata gttggtcgct tgttaccgct acaaaagtgt agttggcttt
      241 aatacgtttt agggcggttt cttcattttc atagccaaga gccgggtcgt ataaatctaa
      301 tgctcggagt aaacggaggt aagtgttggc atcgaaacga cctaaaaatt tcgtgccttg
      361 atagcttaaa taggattcca cttggaaatg gtcgccccaa atttgtcctt gctgtttggt
      421 ttctcgtcca aaggctttag caagttgaat atcagtacgg taagtcagca taccgagcat
      481 acgggcgatt tttaagccgt tatcaggtgc aatgccatca taatagttcc caccgttaaa
      541 gtgtggatcg ttaataatag cttggcgcat aacgtggtta aaaccgatag cctcggcact
      601 tagggtaagt gacgaacaaa gatttataat gttgcgaact ttatcagggt aactaatacc
      661 ccactgtgtt gcttgcattc cgccgaaaga tccccctacc actgcgtgaa gttgagggat
      721 ttctaaatag tccaataatg ctttttgtac attaacaata tcttgcactg taataattgg
      781 aaacaaacta ccgtaaggtt tattggtttt agggttaatc gaagctgggc cggttgtgcc
      841 tttacaaccg cctaatacat tactgcaaat aaagaaatat ttatcggtat caaacgcaag
      901 ccctttgccg atgaaatctt gccaccagcc tttctcggtt ggtgagtcat agtaaggctt
      961 agcatcaccg gtaagggcgt ggcaaagcaa gaccgcattg cttttctctg catttaatct
     1021 gccgtaagtc tggtaagcca ctgtgatagg ggacagttcg cctcctaatg tgagtggtaa
     1081 aggtacgtcc tcaaaaaggg taatctgctg agccataaaa atcctgtttg caaaaaattc
     1141 tgcttttttg accgcttgtt gtaatgaccg ttaaattagc ggtgttcatt tcaattgtca
     1201 agaattttta gacgtctaaa cgtctagatt tttaaacggc taaaatcaaa attttattgc
     1261 tgagaagata tttattactt aacaaataac atgaaataga ataaatttat tgaacgatta
     1321 gactattttg tttgtctcta atttacccat cttaaatagg gtagcaaaag taaaggatct
     1381 catttgaacc aaacgcgtga taggttagaa aaattgccac ttttccataa aatgcagcag
     1441 tttattatta aggcattgaa aataattgca attttcccct tattgggaat agctatatta
//
LOCUS       DANLXK010000229         1383 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.233, whole genome shotgun sequence.
ACCESSION   DANLXK010000229 DANLXK010000000
VERSION     DANLXK010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..514
                     /locus_tag="PXD88_002635"
     CDS             <1..514
                     /locus_tag="PXD88_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL6282147.1"
                     /translation="SKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKV
                     NQLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPP
                     FTIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKE
                     PESLEDIRSK"
     gene            complement(551..>1383)
                     /gene="purU"
                     /locus_tag="PXD88_002636"
     CDS             complement(551..>1383)
                     /gene="purU"
                     /locus_tag="PXD88_002636"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005641775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL6282148.1"
                     /translation="QHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVENETKRF
                     FMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLMKNY
                     YGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSPDYI
                     VLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHFVND
                     ELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKTIIL
                     "
BASE COUNT          439 a          233 c          263 g          448 t
ORIGIN      
        1 tagtaaacag attccttacc gggagtatgc agttgtactc ggtacggcaa aattttactc
       61 taaagatgtg attaaccaat attataaata tcgtttggaa gccgctaagc aattagtcca
      121 agaaggaaag gtcaatcagc ttttgttaag tggagataat aaaacgccgt actataatga
      181 gccaaaaaca atgacaagtg atctacttaa aatggggatt gcgacttcaa aaattaagca
      241 ggattatgcg gggtatacca ctttttattc aataattagg gctaaaaaag tatataaatt
      301 accgccattt acgattatct cccaaaaatt ccactgtgaa agggcattgt ttattgcaaa
      361 atttagggat attgatgcaa tttgttatgc cgctacatat ccagaggggg cttatcaggt
      421 acgaatgcgg gaaattttag ccagatcggc aatggttttt agtttgttga taggtaaaga
      481 gcctgaatca ttggaagata tccgttctaa atgagatagc cggtcagata atgttgaccg
      541 gctattttgc ttataaaata atggttttgt ttttatatac aaatactttg tcagcaagca
      601 ctaattctaa ggcttggcta agtacggttt tctcgacatc acgtccggca cgcatcatag
      661 cctctgcggt gtaggtgtga tcaacattaa tcacattttg cataataatc gggccttcat
      721 ctaattcatc attcacaaaa tgggcggttg caccgataat tttcactcca cgttcgtatg
      781 cacgatgata aggttttgca ccaatgaaag cgggtaagaa cgagtggtga atattgacaa
      841 ctcggtttgg ataacgagcg acaaattccg gattcagcac ccgcatatat ttagccaaca
      901 caatataatc aggtgaatat tcatcaattt tttccgctaa taatttatcg tgttccactc
      961 gggttaaatt ttcgtggctg actaaatgga atggaatatc gaaacgttca actaaacttt
     1021 ttaatgtttc gtggtttcca atcacggcag caatttctac atctaatcca ccatagtaat
     1081 ttttcatcag taagtcacct aaacaatgtg cttctttggt aactaaaata acgatacgtt
     1141 ttctttgttt agggagtaat ttatagcttg agccttcagg taaggtaaat tttaaatcag
     1201 tgagtaaggt ttcatcatta aaaattccgt ttaattcggt acgcataaaa aaacgtttag
     1261 tttcattctc aacaaattca gaatttttaa taatatttaa ttggtgctta tagcaaatat
     1321 tggtaatttt agcgacaagt cctgtatcat caggacattc agttaataat attttgtgtt
     1381 gtt
//
LOCUS       DANLXK010000230         1349 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.234, whole genome shotgun sequence.
ACCESSION   DANLXK010000230 DANLXK010000000
VERSION     DANLXK010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>1349)
                     /locus_tag="PXD88_002637"
     CDS             complement(<1..>1349)
                     /locus_tag="PXD88_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6282149.1"
                     /translation="QQDISRLNILLEQKNIEENRNLERMISYQLGYALINACKSFSGF
                     ISLPSELLKIRKLAKDKKQQKLLPSSPVANTPKQQTALVTSAPARSQSIDLTRGLTLL
                     DPISELCWADAFTGYPLVRKSYADHIAGSTCKFAFFESAWQANKGSWIYAFTSPGLKH
                     NNAQALLDAIQKLKDKSIPIIFWNKEDPMHYEMFKPIAEKVDYVFTTDQLVVDKYKKE
                     LGHSNIWALPFAAPIKVTNPIGRFSLDTETVCFAGTYYAQNHENRKKQMDMLLPALLA
                     YNGCIYDRASKDTSGKYAYPEQYTHLIREGVNFNEIVKLYKKFKVFLNVNTITQSTTM
                     MSRRVYELLASGTPVVSTPSKAITAQFPGIVITVNNEKEAELAVHKLLTDSYYWHKQS
                     MLGIREVMSKHTYENRWEFACSVINNEPIKEKTPSVRIIAVYHNYLDLAIYIDSLIH"
BASE COUNT          421 a          239 c          222 g          467 t
ORIGIN      
        1 tgatgaatta gagaatctat atagatagct aaatctagat aattatgata aaccgcgata
       61 attcgaacac taggtgtttt ttcctttatt ggttcattat tgattacact acacgcaaat
      121 tcccaacgat tttcataagt atgttttgac attacttcac gtatgcccag catggactgc
      181 ttatgccaat aatagctatc tgtcagtaat ttatggacag caagctcagc ttctttctca
      241 ttatttacag taataacaat gccagggaat tgtgccgtaa tagctttaga tggcgtagat
      301 acaacaggtg tgccgctagc tagaagttca tacacacgtc ttgacatcat tgtggttgat
      361 tgagtgatgg tattaacatt taaaaatact ttaaatttct tatacaactt aactatctca
      421 ttgaaattta ccccttctcg gataagatga gtgtattgtt caggataagc atatttgcca
      481 cttgtatctt tagatgctct atcataaata cagccgttgt aagccaataa tgcaggtaac
      541 aacatatcca tctgtttttt acgattttca tgattttgag cataatatgt tccagcaaaa
      601 caaactgttt ctgtatcaag agaaaatctg ccaattggat tggttacttt aattggggca
      661 gcaaaaggca aagcccaaat atttgaatgc ccaagttctt ttttatattt atctacaacc
      721 aattgatctg ttgtaaaaac ataatctact ttttctgcga ttggcttaaa catctcataa
      781 tgcattggat cttctttatt ccaaaaaatg ataggaatgc ttttatcttt tagtttctga
      841 attgcatcta acaatgcttg agcattatta tgttttaagc ctggtgaagt aaaagcatag
      901 atccatgacc ctttatttgc ctgccaagca ctttcaaaaa aagcaaattt acacgtgctg
      961 ccagcaatat gatcagcata agattttcta actaaaggat accctgtaaa ggcatctgcc
     1021 cagcataatt cagaaatagg atccagtagt gtcaatcctc ttgtcaagtc aatagattga
     1081 gatcgggcag gtgcacttgt aactaatgca gtctgttgct ttggtgtatt tgcaacaggg
     1141 gaagatggca ataatttctg ctgtttctta tccttagcta acttcctgat ttttaataat
     1201 tctgaaggca aggatataaa accactaaat gatttacaag cgtttattaa agcatatcct
     1261 aactgataag aaatcattct ttcaagattt ctattttctt caatgttctt ttgctctaac
     1321 aaaatattta atctggatat gtcttgctg
//
LOCUS       DANLXK010000231         1342 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.235, whole genome shotgun sequence.
ACCESSION   DANLXK010000231 DANLXK010000000
VERSION     DANLXK010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1342
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(192..533)
                     /locus_tag="PXD88_002638"
     CDS             complement(192..533)
                     /locus_tag="PXD88_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL6282150.1"
                     /translation="MKAILCQRAKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIG
                     NYIVDFVCFSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAV
                     LDTIFYEITRG"
     gene            complement(681..1313)
                     /locus_tag="PXD88_002639"
     CDS             complement(681..1313)
                     /locus_tag="PXD88_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL6282151.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
BASE COUNT          417 a          275 c          217 g          433 t
ORIGIN      
        1 ccctctccca caaggggaga gggttattct ttcaaaaatt caaaacaact aaaaaattag
       61 cattctcctt ttgtaggaga aaatgttgtt ctttcaaaat tctaaaataa ccgcaaaatt
      121 aactctcgcc ccttgtggga gagagacaga taaatcattc gttcagaatg atttatcaga
      181 gagaggggaa attaccctct cgtaatttca taaaaaattg tatctaaaac agcctctaga
      241 tcgctatgaa tttgattatt ccaaaatctt aaaaccctga acccctgacc gtttaaaaaa
      301 tgagttcgta gattatcata gttttgttga tctaaatgtt gtgaaccatc taattcaata
      361 actaatttcg ctgaaaagca aacaaaatcg acaatatagt tacctataac ttgttgccgt
      421 ttaaatttta tcgctaaaaa tcgttttgct cttaatgctt gccaaagaac cttctctgct
      481 tctgtcatat tagtccgaag ctgtttagct ctttggcata aaattgcttt cattttttat
      541 tcctcttttt taatttagta taaaaggaat aaaaaatata atttgagcga tttttgtgat
      601 ctaaatcgaa aatcagaaaa tttctttcgt tctaaaaaaa taagctaaac agcctatatt
      661 tcagcctctc ttacaaacac ttaagccacc gaatatccca tattttcagg ggcaaattcg
      721 ccttggtagt ggcgttcaat cggaacggcg attttacttg taagatccag cacttgatgc
      781 ccttgtaatt tctctacatc ggtttgccag ttttcccaac gcaaatcctg ataaaaatgg
      841 tttaaatctc cggctaatgc ccagcctaga aattctgaat aacctaattg ggtgttttcc
      901 cattttttag cttttggatg ataataataa actttgccaa gatctgagcc gattccgccg
      961 gcattaatgg caaaatagcc accgattgca tcatccgcta ccagcaagtg gcttggttgt
     1021 tcgccagatt gtttaaaagt tttgccaaag ttccaatcaa ataagcctcg aggcaatttt
     1081 tcgttgcctg agcctaaaat gcgtaaccaa ccgtggtcaa taaatacgcc accggtttca
     1141 tacaccattg cccctagcgg tgagcgagta gaaagttgca taccaaccaa tgcactgccg
     1201 gcatcttcag ggtaactcgc taaaatttcg taatgatttt tggcttgggt aaaccagtct
     1261 cttaaaatta accaagccga ttgtttatct aataattgtt ctaaattttt catttgcaaa
     1321 atttccttag aatttgaccg ct
//
LOCUS       DANLXK010000232         1327 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.236, whole genome shotgun sequence.
ACCESSION   DANLXK010000232 DANLXK010000000
VERSION     DANLXK010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            41..1228
                     /locus_tag="PXD88_002640"
     CDS             41..1228
                     /locus_tag="PXD88_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282152.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSIFYLMLLHFLLAYNKKTDVVNEWFLFLLLCVGLISGRTFLLMSVISIALYF
                     KWKYILPLIAFTALILFLAIVFPENRYVEHALEPVINLLSGTGKVSSSTDNLVKNHLF
                     LPTLNQFISGDGLYYTETGGYYGGSDSGYIRQVLYGGVSYMLACFAFTYYFVRKVAVN
                     WFEGSWIFTLSTIGILAILNIKADTFAFPGLMMLFLMFLSLFGTSGRNVTFFCKNKEA
                     EYV"
     gene            1221..>1327
                     /locus_tag="PXD88_002641"
     CDS             1221..>1327
                     /locus_tag="PXD88_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6282153.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIV"
BASE COUNT          361 a          202 c          253 g          511 t
ORIGIN      
        1 aaacgtaatt ttactcagcg aaattcataa taggtctgaa atgtcagcac tcattaactt
       61 attttatctt tacgatccgt ggtttttcca ttttttaaga atgtcgtttg tagtcgggct
      121 tgttgcttgt ggctatttgg ttttccaaat aatcaagggc aaatcgaatg gcattattat
      181 tcctaaagat agcctgattg caattattgc attaatcggc tttagcatta ttccattatt
      241 gattaacagt acaaaagaaa ttggtgtgct ggcaatgtat gtcaaaatgc tgattttgtt
      301 tgtgttcggg attgcgattt ataatgtttt ttatcataac caacaaggta aaactttatt
      361 cgttcgtgat ttaaaaatcg gcattgctat tcaatggatt tgtggtgtga cagccttatt
      421 aggtttgccg tttatggtgg attttttatt atccagcaat gcaatgatgc cacgtttttt
      481 tggttcggaa caagaatacc gtttatataa catcacttct tccgcctttt tccaattaag
      541 cattttttat ttaatgctat tacatttttt attggcatat aataaaaaaa cagatgtggt
      601 gaatgagtgg tttttatttt tattattatg tgttggttta atttccggta gaaccttttt
      661 attaatgtca gtaataagta ttgcactcta ttttaaatgg aaatatatat tgccactgat
      721 tgccttcact gcgttaattc tatttttggc gattgttttt ccggaaaacc gttatgttga
      781 acacgcctta gaaccggtaa ttaatttatt gtccggcacc ggaaaagtca gctcttcaac
      841 cgataattta gtgaaaaacc atctgttttt accgacttta aatcagttta tttccggtga
      901 tggtttatat tacaccgaaa ctggtggcta ttatggtgga tcggattccg gctatattcg
      961 ccaagtatta tatggtggag taagttatat gttggcgtgt tttgccttca cttactattt
     1021 tgtacgcaaa gtggcggtga attggtttga aggcagttgg atttttacct tatccaccat
     1081 cggcatttta gctattttaa atattaaagc agataccttt gctttcccgg ggctgatgat
     1141 gctgtttcta atgttcttgt cgctgtttgg aacaagcggt cgaaatgtaa catttttttg
     1201 caaaaacaaa gaggctgaat atgtttagta ttattgtgcc ttcttataac cgtaatcaag
     1261 aaatcaatgc gttgcttgag agtttaaagc aacaaactgc atataatttt gaagtgatca
     1321 ttgttga
//
LOCUS       DANLXK010000233         1275 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.237, whole genome shotgun sequence.
ACCESSION   DANLXK010000233 DANLXK010000000
VERSION     DANLXK010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1275
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..1036
                     /locus_tag="PXD88_002642"
     CDS             <1..1036
                     /locus_tag="PXD88_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282154.1"
                     /translation="TFAATLVLSACGGSGSGGSSSTPNHPKPVLVPKTQNNLQAQNVP
                     QAQNASQAQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPPVPQPQSQKI
                     DGSFDKIGSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKDFLVLNLSDI
                     NAEQLSGDFLIRRSDDLFYGYYHDTNGKNLVDAADKFSQYFVVYDEKRVNDNISDKLT
                     ATYRKKEGFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDGNAEIFTIKGDTK
                     QLEITPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSDQKYLIGEAKSDN
                     WQAIMVSEKK"
BASE COUNT          450 a          246 c          235 g          344 t
ORIGIN      
        1 aacatttgct gcaaccttag ttttaagtgc ttgcggagga agcggtagcg gaggttcgtc
       61 ttcaacaccg aatcacccca aaccagtact agtaccaaaa acacaaaata atcttcaagc
      121 acaaaatgtt cctcaggcac aaaatgcctc tcaggcacaa aatgcccctc aggcacaaaa
      181 tgctcctcag gcacaaaatg ctcctcaggt ggaaaatgct cctcaggcac aaaatgctcc
      241 tcaggtagaa aatgctcctc aagcagaggt tactccgcct gtaccacagc cacaatcaca
      301 aaaaattgac ggttcttttg ataaaattgg ttcagtaaaa ctcaataaag aggctcaaac
      361 tcttgagctt agtagattca ctttggtgga taaattaggc acaccaccga agtttgataa
      421 agtaagcggt aaaaaaatta ttgaagaaaa agattttctc gtattaaatt tgtctgatat
      481 taatgctgaa caactctctg gcgattttct tattcgccgt agcgatgatc tattctatgg
      541 ctactatcac gatacaaatg gcaaaaatct tgtcgatgct gccgataaat tcagtcaata
      601 ttttgtcgtg tatgatgaga aacgggtaaa tgataatatc tctgataaat taacagcaac
      661 ttaccgtaaa aaagaaggct ttgtatatgg ttcaaatcca catactaaag aatttgccgc
      721 acggatcagc aaattggggg atgtagaaat taaatttgaa aatggtcaag ctcaaggaag
      781 tataaaagat ggaaatgctg agatctttac tattaaaggt gatacaaaac agttagagat
      841 taccccaacg gaaagtaacc gaatcattat agcaatttta gaccaaaatc aaaaaagcta
      901 tactccagga atggaaaaag caattatgga aactaagttt attgattcaa aggctggtaa
      961 ttccgaccaa aaatacttaa tcggtgaagc aaaaagcgat aactggcaag caataatggt
     1021 tagcgagaaa aaataaagtt atcttttgct aaaaactgaa ataaaaaggc tgagtccggg
     1081 taatatcggc ctcagtcttt taaattgtag aaaatcatct gtagaagatc aaacctaatc
     1141 tgacagtccc ccgttttaaa ttaccgtgtc tgtcagatta atttgagctt aaattctttt
     1201 ccacccaaat ccgttttcca tcaagtaagg ttgccatcgg tgttctgcca tagcacattt
     1261 ttccttgatg tgttc
//
LOCUS       DANLXK010000234         1242 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.238, whole genome shotgun sequence.
ACCESSION   DANLXK010000234 DANLXK010000000
VERSION     DANLXK010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1242)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            194..469
                     /locus_tag="PXD88_002643"
     CDS             194..469
                     /locus_tag="PXD88_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6282155.1"
                     /translation="MAKATVARRIKNAINGNFGDHKSLAGTGGLYEMRIATGAGYRIY
                     YAQQGNVIYILLHGGDKSTQQADIEKAKALWAELKTTGESNGNNTNQ"
     gene            447..770
                     /locus_tag="PXD88_002644"
     CDS             447..770
                     /locus_tag="PXD88_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL6282156.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
BASE COUNT          439 a          231 c          237 g          335 t
ORIGIN      
        1 gcgtgaacaa tgttcaatga tatgaataat tgaaactgct ctcttttcaa aatttaacca
       61 cttgattatt tgtatcttaa tggatacact aagcaataaa tagaataaga ggctggcaat
      121 gacagagcaa accactaatc aaatcatcat taccgataat ttttcaaaat agcttgagaa
      181 tttaaagaac cctatcgcaa aagcaacggt agcaaggcgg ataaaaaatg cgattaatgg
      241 caactttggc gatcataaat ctttagccgg tacaggcgga ctttatgaaa tgcggatagc
      301 aacaggagcc ggatatagaa tttattacgc acaacaagga aatgtaattt atatcttgtt
      361 acacggcggc gataaatcaa cacagcaagc cgatatagag aaagcgaaag cattatgggc
      421 tgaattaaaa actacagggg aaagcaatgg aaacaataca aatcaatgaa caggcagcag
      481 aaaagcacgg tttacgccct tttgacgtgg cggagttttt aaccgatgag gcaactattc
      541 aagcctattt agcggaagtg ttaaaagagg gcgaccaaga cgaattttta gaagccttga
      601 acaatgtggc aagggcaagg ggaatggcgg agcttgccaa gcaaacaggg ctagggagag
      661 agagcctata taaaacccta gccaaaggca gcaaaccacg ctttgacact attcaaaaaa
      721 ttctaggggc attcaattta gtgcttattc cacaagtcaa aaatggctaa aacttatcac
      781 ttgctacctg ccaaaacctc acattcaaat agccgttgat tgatattaac ggctttttta
      841 ttgcttaatt ctgtaccaat tacgcaccga ttgcggatca atacggggca agttttcgca
      901 aaaccttaat gaaatatgac cgcttgtgat tttgtacaaa acgacacaaa ccaatgtata
      961 aaatcaaaac ttgccacaaa tggcggaatg atattaaatg ccccacaaac tagcagtatt
     1021 tcttaatgac ttttcatttt aagggtacat ttaagggtat gtttaacaag tcttaaatgc
     1081 acttctcaat aataacaagc ctcatagcat acaattcaaa ctcggctggg gaccatttaa
     1141 gcgttgcata ttgtctttca ctgtctcaaa tttactataa aatcaagaac ttagattatt
     1201 ttatagtctc ttattgtctt ctttagttgc attgtatctt ag
//
LOCUS       DANLXK010000235         1225 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.239, whole genome shotgun sequence.
ACCESSION   DANLXK010000235 DANLXK010000000
VERSION     DANLXK010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            6..254
                     /locus_tag="PXD88_002645"
     CDS             6..254
                     /locus_tag="PXD88_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HDL6282157.1"
                     /translation="MTATKKTLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLVEQSPQVFEQIARL"
     gene            306..893
                     /locus_tag="PXD88_002646"
     CDS             306..893
                     /locus_tag="PXD88_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL6282158.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            886..1203
                     /locus_tag="PXD88_002647"
     CDS             886..1203
                     /locus_tag="PXD88_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282159.1"
                     /translation="MLEIKRQVTILRPTNYGKEENHYKHLYILLTDPCFDGETGKGDM
                     ILSVNCSSIKDGKALDETCILKAGTHEFITRDSFIFYRHIKIDSLDEIKANIEAGYFI
                     QKP"
BASE COUNT          452 a          233 c          243 g          297 t
ORIGIN      
        1 aagaaatgac tgcaactaaa aaaacacttt cagacacatt actaaaaaat cttaaatatt
       61 ccccaaatgc gaagcctatc gcagacagta acgggctatt tattcttgca cagaaaaaag
      121 cgaaagtatg gatttatagc tatatcagcc ccaaaacagg caagcgaagc acaaaaaata
      181 gaatcggtag ctatccgcaa atgagcttag tggaacaatc cccacaggta tttgaacaaa
      241 tcgcacgtct ttaaaatatt aaattaagag aaagcactat ttgcgatgta gcaggagata
      301 aaacaatgtt tgatgaatta aaaatagccc aagcgaccgc ctatttgcta cataaggcag
      361 gcggaacaat ggagcatatt aaggtaatga aattgcttta tcttgcggat cgcttatcgt
      421 ggcaaagata cggctattct atttctaatg atgaatatta ttcattgcct tatggaccgg
      481 tattaagcaa cacactcaac ctaatgcgag gagaagaagc gagcttatac caaaaaacca
      541 gtatttgggg cgagtggata gcagataagg aagatcacaa aatcagcctt aaaaaatccg
      601 taaataccga agatgaatac ttctttgatt gcctttcaga gagcgacacc gaaattttag
      661 aagaggtatt tgcgaccttt ggaaattata agccattcgc cctagtggaa tatacccata
      721 accctaaata cattcccgaa tgggaagacc cacaaggcag aagcaagccg atttctttaa
      781 gcacgcttct tactaagcta gggaaaacgc caagcgagat cgaaagcatt ttagagcaac
      841 aggcggaaaa agggacaatg gataaccttt tcaagggctt aggcaatgct tgaaatcaaa
      901 agacaagtaa cgattcttag accgaccaac tacggcaagg aagagaacca ctacaagcat
      961 ttatatattc tgcttaccga tccgtgcttt gatggtgaaa ccggtaaagg agatatgatt
     1021 ttaagtgtaa actgctcaag cattaaagac gggaaagcac ttgatgaaac ttgtatttta
     1081 aaggcaggaa cacacgaatt tatcacacgg gacagcttca ttttctaccg ccatataaaa
     1141 attgattcgt tagatgagat taaggcaaat atagaagccg gttattttat tcaaaagccc
     1201 taattaatga tgaagcctat caaca
//
LOCUS       DANLXK010000236         1196 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.240, whole genome shotgun sequence.
ACCESSION   DANLXK010000236 DANLXK010000000
VERSION     DANLXK010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..547)
                     /locus_tag="PXD88_002648"
     CDS             complement(<1..547)
                     /locus_tag="PXD88_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL6282160.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKY"
     gene            complement(614..>1196)
                     /locus_tag="PXD88_002649"
     CDS             complement(614..>1196)
                     /locus_tag="PXD88_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL6282161.1"
                     /translation="NKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTAP
                     AAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQE
                     GLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQA
                     ALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
BASE COUNT          268 a          205 c          228 g          495 t
ORIGIN      
        1 catatttagc tcttaatata ttttctaact gttgcccttc ttcagctaat tgattcaatt
       61 ttgtttgtaa ctcgccaaat gctttatgtg cttccggtgt aggatttttc tccattttag
      121 caccttctac gatcatctga gcccctaaag tcaggacttc taaggttttg tcttttagtg
      181 ctttgacttc attattttga atattcaggg tttcagcact tatcttaata tgatcaattt
      241 gagctaataa tgcgttatta actgtctctt gcattaaggt agaatcggct ttttgtttgt
      301 cagtaagtgt ttctgttgcc gctttaattg catcatttaa ggctttttct tgagtgtctt
      361 gccattcccg taacatttta taatcttgag cgccggtatc agcaggttta acttcttctt
      421 ttgactcttc tttcacttga actggcgatt ctgctgagct ctgtgttttg gtagaattag
      481 gttgttcgca agcggttaaa aaaagggtaa ataatacaga taggctaatt ttagcgagcg
      541 tgttcatagt aatccttagt aattgcaaaa aaaagctaga gcaaaatact ctagcttttc
      601 attgaatggt aaattattta gctgagaatc tttgctgtaa ttctacgttt aatttttgta
      661 actcattacc agcttcaatt aaagactgag ctttttgttg tacggcttgt aatgctgctt
      721 ggtcatttgg tgtagagatc gtttttactt gttcagaaat cacttcactt gaaagtgtta
      781 aaactgattt tgttttttct ttaaatgttt tgatttgtgc atcagatact tcaatcgcat
      841 ctaagctttt tacagtttct tctacttttt tattaaatgc acttaatcct tcttgaattt
      901 gtttaggatc ttgtgtagct aatttctttt gtagttctgc ttgtgctgtt gccattgtgc
      961 tttcttgtgc cgtattccaa tcaactaatt tttggtaatc tgcttttgca gcttcgcttg
     1021 gagcggctac agctgtttca gcaggtttgg ctgcttctgc agcaggagct gttgtagttg
     1081 gtgcagcttc agttgttttt gtaggttctg ttgccggtgc tttttctgct ggtttatcac
     1141 aagctgctaa gaataatgcg actaaagcgg ttgcactgat ttttgttaat ttgttc
//
LOCUS       DANLXK010000237         1187 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.241, whole genome shotgun sequence.
ACCESSION   DANLXK010000237 DANLXK010000000
VERSION     DANLXK010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.241"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..170)
                     /locus_tag="PXD88_002650"
     CDS             complement(<1..170)
                     /locus_tag="PXD88_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248476.1"
                     /note="Bacteria have multiple sigma factors which are
                     active under specific conditions; the sigma factor binds
                     with the catalytic core of RNA polymerase to produce the
                     holoenzyme and directs bacterial core RNA polymerase to
                     specific promoter elements to initiate transcription;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HDL6282162.1"
                     /translation="MIHNKISLDISSEQLADIRQQMLKFAQLQLQDIALAEDMVQEAF
                     VNAIKNIDNFQR"
     gene            340..>1187
                     /gene="msrA"
                     /locus_tag="PXD88_002651"
     CDS             340..>1187
                     /gene="msrA"
                     /locus_tag="PXD88_002651"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL6282163.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDN"
BASE COUNT          449 a          204 c          197 g          337 t
ORIGIN      
        1 ttacgctgga aattatcaat attttttatt gcattaacga atgcttcttg aaccatatct
       61 tcagcaagag caatatcttg taattgtaac tgagcaaatt tcaacatttg ctgacgaata
      121 tcggcaagct gttccgatga aatatctaaa gaaatcttgt tatgaatcat agtgttatat
      181 tgagaaaatt ttttgtgaga atattaaaca atattcgact aatcctatag agagtaaaac
      241 caattttgat cttagcaaaa aagtaagaaa ttatgaatgt ttaaggttaa accctcatcc
      301 ttaaaaaata aaattacata agttataaag gagaactgga tgaaatacaa tcaactgtta
      361 ctatgtttgg tgtctgctat ctttaccacc tcctcaatag caaacatcac aacccctaac
      421 gagatgcgat ctgaaaactt acaggatatt tacttggcag gaggatgttt ctggggcatt
      481 gaagcctata tggaaaaaat atatggcgta aaagaggcta catcgggcta tgccaatggc
      541 aaaactgagc aaactgctta ccgaattatc gggcaaaccg atcatgcaga aacagttcac
      601 gtgacctatg atgctaataa aatttcttta gaaaagctgt tgcaatatta ctttaaagta
      661 attgatccaa ccagtaaaaa taaacaaggt aatgatattg gccgccaata tcggacaggt
      721 atttattatc agaatgagca agataaacaa attattttaa aagaaataca agctcaacaa
      781 gcaaaataca aacaaaaaat acaagtgcaa gtagaaccat taaaacatta tattttggca
      841 gaagagtatc atcaggatta cctaaagaaa aatccaaatg gctactgcca tattgattta
      901 aaccaagcca acagcattat tatcgatccg aaagattatc ctaaacctag tgatgcaaca
      961 ttaaaaatga aattaacgcc tttgcaatat agcgttaccc aacgtaaaaa tactgagcgt
     1021 tcattcagca atgaatattg ggataatacc gcaccgggca tttatgttga tataactaca
     1081 ggagagcctc ttttttcatc tctcgataaa tatgactccg gctgtggctg gccaagtttt
     1141 accaaaccaa ttatcaatga ggttgttaac tataccgaag ataatag
//
LOCUS       DANLXK010000238         1185 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.242, whole genome shotgun sequence.
ACCESSION   DANLXK010000238 DANLXK010000000
VERSION     DANLXK010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..844
                     /locus_tag="PXD88_002652"
     CDS             <1..844
                     /locus_tag="PXD88_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL6282164.1"
                     /translation="RDNNLRADAPLETISEAFKLDISKVYVALSKDLGITIKSPEQAA
                     TYVNDERYRRFNTLIDKKFNDSVLIELLNCFEKRDDKRIEELVTDEAAIPTIFEYILG
                     IIWYKVSERQGNILDFMKLSLEANLLPKTHAAGGYADIIYEYEACTSYPKHSLLLEAT
                     LADGNNQRRMEMEPVSRHLGDYRIRFNNPFDYSLFVSTYLDKNVISDFRYRKIIPYTR
                     DEETITGMKIISMDTDSLKKIIENKVKYKYLYEIFDKYHEMPLETVDWHDGMIKEATG
                     EYKS"
     gene            906..>1185
                     /locus_tag="PXD88_002653"
     CDS             906..>1185
                     /locus_tag="PXD88_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDL6282165.1"
                     /translation="MKNRIEHPKIFISYAWGSQEHDEKVIALATNLKGDGIDVIFDKW
                     QLKEGNDTFKFMEKSVLDESITNVLILIDPIYAKKANERAGGVGTETQI"
BASE COUNT          449 a          146 c          242 g          348 t
ORIGIN      
        1 tagagataat aatctcaggg ctgatgcccc acttgaaact atatcagaag cattcaagtt
       61 agatattagc aaagtatatg tagctttaag taaagattta ggaattacaa ttaagagtcc
      121 ggaacaagct gcaacttatg taaatgatga acgatacaga agatttaata ctttgatcga
      181 taagaaattt aacgattctg tgcttataga gttactaaat tgttttgaga aacgtgatga
      241 taaaaggatt gaagaacttg ttacagatga ggctgcaata cctactattt ttgaatatat
      301 tttgggaatt atatggtaca aagtgagcga aagacaagga aatattttgg atttcatgaa
      361 gttatcatta gaagccaatt tattgccgaa gacccacgca gctggaggtt acgcagacat
      421 tatatatgaa tatgaagcgt gcacctctta tccgaaacat tcattattgc ttgaagcaac
      481 ccttgcagat ggaaataatc aaagaagaat ggaaatggag cctgtttcaa gacatttagg
      541 cgattatagg attagattta ataatccgtt tgattacagc ctatttgtta gcacatactt
      601 agataaaaat gtaatctcag attttagata tagaaagata attccataca ccagagatga
      661 agaaaccatt acaggaatga agattatttc aatggacaca gattctctta agaaaataat
      721 tgagaataag gttaagtaca agtatctgta tgaaatattt gataaatacc atgaaatgcc
      781 attagagact gtagattggc atgatgggat gataaaagag gctactggag agtataagtc
      841 atagtgatta taagatagtg agaaagaata cttattttga aaggaataca tgggaattga
      901 tacagatgaa gaatagaatt gaacatccta agatttttat ttcatatgct tggggatcac
      961 aggaacatga tgagaaggtt attgctttag ctacaaatct taaaggagat ggtatagatg
     1021 tcatttttga taaatggcag ctaaaagaag gcaatgatac ctttaaattc atggaaaaaa
     1081 gtgttttaga tgagagtatt accaatgtac tgattcttat agatcctatt tatgcaaaga
     1141 aagcaaatga aagagccggt ggcgtaggta cagaaacaca gatta
//
LOCUS       DANLXK010000239         1180 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.243, whole genome shotgun sequence.
ACCESSION   DANLXK010000239 DANLXK010000000
VERSION     DANLXK010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            129..374
                     /locus_tag="PXD88_002654"
     CDS             129..374
                     /locus_tag="PXD88_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282166.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
     gene            593..>1180
                     /locus_tag="PXD88_002655"
     CDS             593..>1180
                     /locus_tag="PXD88_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL6282167.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYVDVQFEKAEGLDN"
BASE COUNT          405 a          195 c          224 g          356 t
ORIGIN      
        1 ccacactatt tcccatatct ccgactttta ccagcacaga aggtaaacct ctcacagtta
       61 aacgggtagg aaatgattac gagtattcgt atgacaaaac tactttcaaa aacccgatta
      121 aaaaggcagt gaccaacgac ggttcgatta tcgccagagg ctcaggtttt actacttatg
      181 ccttagagtt ggaaaatgat ggcttgaaat atctagtcgg atttgttcaa ccaaatggaa
      241 atgcaaaaga gtttattgag ccgggagcaa caattcgccg tagtaatgat caaccaagta
      301 ttggttctgt ggattgtgac cctcgtaaaa aaatccatta taagtttgat gttcatttga
      361 tgaatacttt ataatacctt tgtggtgcta gagctagccc aagttaaaaa agacaaagct
      421 cggcagatga acaattgtgg tgtcagagct gacccacgtt aaaaaacaca atgctcggta
      481 ggtaaatccc ttaggtttaa aaaatctaag ggatttttgt ttaaaagact tgctctttat
      541 tatcaggtgg atctatcata atttaaactc tctaatgtgt caggagataa aaatgtgtaa
      601 aaaagctttc ccattatggg gcttaatctt cggattactg ctatccactt cagcattctc
      661 agtgtctaaa aacttcaact atcaaaacat attgatggaa tcattacatt ttagtgagaa
      721 tatcgagctt agttcgttat ctaaagactg gttactttac agcgatagaa atacgtatca
      781 taaatatcaa aatgacgagt ttgagtttca ggataaaatt gagcaagctg gtaagaaact
      841 acaaaaactg gtggatgaca gaaaatctga agaagcccct attgttttca caattcctgt
      901 aaactcagaa ttcgggaatt atgattttga acaaggtaag tttgagtacc aacccctgat
      961 gaatgggcat atgtatattt cttctaatca atatactgaa aatttgccaa gaaaaattaa
     1021 tctgtatgtt tctaatcccg agtttattga cggtatacct atgggcaagg ataaagctaa
     1081 agagttttta cagaagcgta aaaattcttt gggaaacata aatcgctctg ttatattgta
     1141 tgttgatgta caatttgaaa aagcagaagg attagataat
//
LOCUS       DANLXK010000240         1093 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.244, whole genome shotgun sequence.
ACCESSION   DANLXK010000240 DANLXK010000000
VERSION     DANLXK010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..192
                     /locus_tag="PXD88_002656"
     CDS             <1..192
                     /locus_tag="PXD88_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282168.1"
                     /translation="PQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSESYT
                     VDGESVRDIQLNALRKVNE"
     gene            192..560
                     /locus_tag="PXD88_002657"
     CDS             192..560
                     /locus_tag="PXD88_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282169.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            590..778
                     /locus_tag="PXD88_002658"
     CDS             590..778
                     /locus_tag="PXD88_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282170.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            831..>1093
                     /locus_tag="PXD88_002659"
     CDS             831..>1093
                     /locus_tag="PXD88_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282171.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVR"
BASE COUNT          348 a          216 c          274 g          255 t
ORIGIN      
        1 cctcaagacg gttcggtaat tgattgggat aacattaaaa atgcgaagct cactaaatac
       61 ccgttagaca atagcgaaaa acgcacctct tatttaggct gttttactac cgatgtgagc
      121 gagtcttaca ccgttgatgg tgagtcggtg cgtgatattc aactcaacgc attgcgtaag
      181 gtgaatgaat aatgaaaatc actttaaatc ttggcattga atataacggg aaaattcgcc
      241 gtgattgtac ggtgcgattg ctgacgatgg gcggtcaatg cacggctcaa gaaatgattg
      301 cggatttagg gtttgaggaa aactcggaag ccctatcaaa gcgtgaacaa accttggtcg
      361 atatggctta cctttcgcag caagttacct ttgatggtat ttatcaaggt aatgtgacgg
      421 ctcaattttt atttgacaat ttagctaccg aagactactg gcagttgatt gaggcaacgc
      481 tcacactccg aaaaaagcgg ttagaaaatg gggtgagcca aagcgagagc gaaagcccgg
      541 caaatcccga tttggcgtag cagaagcctt taagcagtac cgacaagcgg tgattttact
      601 ctcaaaattt gcaattaccg ccgagcaggt atggcaaatg ccgttgcttg aggtatttgc
      661 gtggattgag agctacttgg agagtgaggg cgtaaaaaca ccgcatagcc caatgggtgc
      721 gaatagcgaa gtgaaacgcg aaagctatgt ctttactcgg tgtggcaaaa ttgaataggg
      781 gcgaaagccc cttttttgta ctttaaaatg agtttaaaga gactttaaaa atggcaaaaa
      841 atatgaaagt gcaactggaa ttgacggcaa aagatactgc ctccccagtt ttaaaccaag
      901 ccgctaaaac cgccgaaaaa gcctttaaaa atacagagcg agcggcacaa aaaagtggca
      961 atgctcaaac gcaagcagca cagaaagcag cgaatgctac agaaagctca aatcggaaaa
     1021 tagaacagag ttaccgtaat gcccgccgag tggctgccga tgtgagccga gcccgtgaaa
     1081 cattaggtgt tcg
//
LOCUS       DANLXK010000241          996 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.245, whole genome shotgun sequence.
ACCESSION   DANLXK010000241 DANLXK010000000
VERSION     DANLXK010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>996)
                     /locus_tag="PXD88_002660"
     CDS             complement(<1..>996)
                     /locus_tag="PXD88_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282172.1"
                     /translation="GHYLCTKVKGVRFFNNIAIGGRNVSAYGATSCSDIFILGNREQG
                     MAVTTVDVEAGVQVEDVQTGECVVANNICSHDIWMSGAKNAIINSNLCRRLRVTSGNP
                     TDTGSNNVEFSNNQAKSIAISKYGSFDNPSLFIDNINFINNILEPSEFNQDVYIDGTI
                     LKQCQFINNRCISKSKQYSVRLARNNPFLNLTFKSNKLSDNPAIISGKQGVIFCDDLS
                     LGVNKHRLRLRFSSPINFTVNQEWQKMPFDRVLNDINGHVDIVSGQFIARTGGTFHLK
                     GKITVTNSSEDVLNLYQLRLLINNEEKERLINQSVSPKNSKSNTNGMTTINFDTVV"
BASE COUNT          309 a          199 c          154 g          334 t
ORIGIN      
        1 aactacagta tcaaaattga ttgttgtcat accatttgta tttgatttgc tgtttttagg
       61 tgaaacactt tgattaatca gtctttcttt ctcttcgtta tttattaaca gcctgagttg
      121 atataaattc agcacatctt ccgatgaatt tgtaaccgtt attttacctt ttaaatgaaa
      181 agtgccgcct gtccttgcaa taaattgacc actgacaata tcaacatgac cattgatatc
      241 atttaacact ctgtcaaacg gcattttttg ccattcttga ttaacagtaa aattaatcgg
      301 cgatgaaaat cgcaatctta atctgtgctt atttactcct aagctcaaat catcgcagaa
      361 aataacacct tgcttacctg atataatcgc aggattgtcc gataatttat tactcttaaa
      421 tgttaaattt aagaacggat tattgcgagc aagtctgaca gaatattgct tagacttgct
      481 aatacaacga ttattaataa attggcactg ttttaaaatt gtcccgtcaa tatacacatc
      541 ttgattaaat tcactgggct ccaaaatgtt attaataaaa ttgatattat caataaacaa
      601 tgaaggatta tcgaaagaac catatttcga tattgcaata gattttgctt gattatttga
      661 aaattctaca ttgttgctgc ctgtgtcagt cggattacct gatgtgacac gcaagcgacg
      721 gcagaggttg ctgttgataa tggcattttt agcaccagac atccaaatat cgtggctgca
      781 aatattattc gctaccacac attcgccagt ttgtacatct tccacttgta cgcccgcttc
      841 cacatcaact gtcgtcactg ccatcccctg ttcacgatta cccaaaatga aaatatcaga
      901 gcaagatgtt gcaccgtaag ctgatacatt gcgacctcca attgctatat tgttaaaaaa
      961 tcgcacacct ttaactttgg tgcagagata atgtcc
//
LOCUS       DANLXK010000242          979 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.246, whole genome shotgun sequence.
ACCESSION   DANLXK010000242 DANLXK010000000
VERSION     DANLXK010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            134..820
                     /locus_tag="PXD88_002661"
     CDS             134..820
                     /locus_tag="PXD88_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282173.1"
                     /translation="MAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGT
                     TISGGTISGTTITGGIIKGARIEGLTGKFTGELEINQLIGGNIYEAKTWTSKATGKSK
                     TYSETKNSFALSDTYYEYVCQFVLPATKATRTLYVVHTPTGESKSETFYGSGSNRTPT
                     TITLPSVIDISNTISPNVSNPFNDSGAILIANTQYVVTCRAWCAGRGRSAKVNFRAII
                     SSTNGSSYQL"
BASE COUNT          344 a          178 c          202 g          255 t
ORIGIN      
        1 cccttggcaa aatgccggtg taaccgctat ccacggtggc tcaatagtta ctaataccgt
       61 tactgctcaa caaattgcag caaataccat taccgccaac gaaatcgcag ccggcacgat
      121 tgcagctcga aatatggcag caaactcgat taatgcaagt catattgtgg ggagttcgat
      181 cactgcggat aagctaaatg taaacaattt agcggcaata tcggcaaatc ttggtaaggt
      241 aactgctggt acaattacag ggacgacaat tagtggtggg acaatttcag gtacaacaat
      301 tacaggggga ataattaaag gagcaagaat tgagggatta acaggtaaat ttactggaga
      361 acttgaaatc aaccaattga tcggaggtaa tatctatgag gctaaaactt ggacatcaaa
      421 agcaacaggg aaaagtaaaa catattcaga aacgaaaaac agttttgcat taagtgatac
      481 atattatgag tatgtatgtc aatttgtact acctgctaca aaagcgacga gaacattgta
      541 tgttgtccac actccaacag gagagagtaa aagcgaaact ttttatggta gtggtagtaa
      601 tcggacaccg acaacaatta cattaccgtc tgtaattgat attagcaata ctatttcacc
      661 taatgtatct aacccattta atgattctgg ggcaatactc attgctaata ctcaatatgt
      721 agtaacgtgt cgtgcgtggt gtgcagggcg tgggagaagt gctaaagtga attttcgagc
      781 aattatatca tctacaaatg gttcatctta tcaattatag gaggcaaata tgaaaaaaat
      841 tatactactt acaacaatta tggtttcagc ttgtacaact caatataagc aagactatac
      901 aacaaaacca accttttgtt atcaactagc ccctcaagag caattaccgg ggaaaaactg
      961 tattggctca ggagggcat
//
LOCUS       DANLXK010000243          964 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.247, whole genome shotgun sequence.
ACCESSION   DANLXK010000243 DANLXK010000000
VERSION     DANLXK010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            223..964
                     /locus_tag="PXD88_002662"
                     /pseudo
     CDS             223..964
                     /locus_tag="PXD88_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein"
BASE COUNT          343 a          167 c          151 g          303 t
ORIGIN      
        1 gactcctcta atagtccact cttgttccat tttggaacat ttttgtatat tatttcgcct
       61 tttctttctc attgtgttct atgtaggcaa cagcattttt tgcaaagtga tcgacgagaa
      121 cattcattac ttcagtccat tttacaggtc ttcctatctt cattccaact tccatcgcta
      181 atctttctat cttgagtttt ttctctaatt taatattgaa cagagcttta tgaaatggtt
      241 gatatagaac aaacgtcagt tgattggatt gatgtaactt attcagctca tattgattcg
      301 gaatctatcc aaaaacaact tatctctttt ttccaaaaca tccatttagg acaaacacgt
      361 cgtacaagac ataacaaaga atatgacaca acggcagaat ggaattcagg ttcagaacac
      421 cgtattttaa aagtttatct aaaaggtaat gaagttcaaa aaagactaca agaagcccag
      481 cacgacttca aaaaatcacc aagtaaaaag tatctgcaaa actcaattca agtattaagt
      541 aatccaaatc tcattgaatt ttcaaaaaaa tgtgttcgtt ttgaagcaag attaaaacaa
      601 cgttatttag ataaacatca aatcccacgc aatttatttg acttaattaa atatcagaga
      661 gattacgaag agcagggtag aagcctgatt aaagacctat ggcaagacgc attcaaagac
      721 attattaagg ctgtcgggga aagcaatatg aatatttaca acagagatca aattcagcgt
      781 ttattacgga aaaattattt ttcaatcact ccaaaaggaa atatgagcta tgcaaaggct
      841 gatcgtttat tcagctttta taagaattta ctaagtgatg gctatagaga aacgctagat
      901 tctatgccaa gaaacacatt ttggagatat gaaaaggatc ttatggccgt tggtttaact
      961 aaaa
//
LOCUS       DANLXK010000244          963 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.248, whole genome shotgun sequence.
ACCESSION   DANLXK010000244 DANLXK010000000
VERSION     DANLXK010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>963
                     /locus_tag="PXD88_002663"
     CDS             <1..>963
                     /locus_tag="PXD88_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282174.1"
                     /translation="QVEYFCFDKKQWIKEVHKYSKGGFKRCVNIPFFRFSKFFLNNAQ
                     RTAFSYVTHYIKKHSYAYSKADNIQELLVKFFSRKQPVMQSAFNHQKRIVKWLWAEFW
                     DKNIISMTLRIDGYRNANLWHYLRYQSRIEVLYKIANEHPNLLPLLAYVKPEYWKCSD
                     LFSYQNWVRSRDKQPFILYAKCQDKMLCESKGQWRWLKKQSRIVVDQCFLHVNQWQLL
                     TEIQMPFKIPVCVICFILTNFSMISCELDRSRQRRLLSIFIQYIYHYWKDNGFRQLKI
                     HLSHLRVLFQDIEDYMIHEGYLHGIPQTWQHLVYHLNLINSNTS"
BASE COUNT          332 a          138 c          167 g          326 t
ORIGIN      
        1 tcaagtcgag tatttttgtt ttgataagaa acaatggata aaggaagttc ataaatattc
       61 aaaaggtgga tttaagagat gtgttaatat ccctttcttt agatttagta agtttttcct
      121 taataatgca caacgaacag ccttttcata tgtaactcat tacattaaga aacattccta
      181 tgcctatagt aaggcagaca atattcaaga attattagta aagtttttct ctagaaagca
      241 acctgttatg caaagtgcat ttaatcatca aaaaaggatt gttaagtggt tatgggctga
      301 attttgggat aagaatatta tctcgatgac acttagaatt gatggttata gaaatgctaa
      361 cttatggcat tatttacgtt atcaatcacg gattgaggta ttgtataaaa tagcaaatga
      421 acacccgaat ctactaccat tattagccta tgttaaacct gagtactgga aatgctcgga
      481 cttatttagt tatcaaaatt gggtaagaag ccgtgataaa cagcctttta ttttgtatgc
      541 taaatgccaa gataagatgt tatgtgaatc aaaggggcaa tggagatggt taaaaaaaca
      601 gtcgagaata gttgtagatc aatgttttct acatgttaat caatggcagt tattaacaga
      661 aattcaaatg cctttcaaga tcccagtatg tgtcatatgt ttcatactta ctaattttag
      721 catgatcagc tgtgagttag atcgatctag acaacgtcga ttactctcta tttttattca
      781 atatatctat cattattgga aagataatgg gtttagacaa ttaaagatac atctttctca
      841 tctgagagtg ctttttcaag atattgaaga ttacatgata catgaggggt atttacatgg
      901 tatacctcag acttggcaac atttggttta ccacctcaac cttataaatt caaatacatc
      961 aaa
//
LOCUS       DANLXK010000245          946 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.249, whole genome shotgun sequence.
ACCESSION   DANLXK010000245 DANLXK010000000
VERSION     DANLXK010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            65..691
                     /locus_tag="PXD88_002664"
     CDS             65..691
                     /locus_tag="PXD88_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL6282175.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            740..>946
                     /locus_tag="PXD88_002665"
     CDS             740..>946
                     /locus_tag="PXD88_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282176.1"
                     /translation="MNLTKAESNLNAKITEEKKARVDADKVNADKLTDITSRVANAES
                     TITNFQSTKANKSEVASLAQSSLQA"
BASE COUNT          319 a          173 c          213 g          241 t
ORIGIN      
        1 tagagttaag aaaaataaag aacataaatc ccctttattt tggctataat tgtaatggtg
       61 agtcatgact aaaattaaat tttacggcaa tttaaaaaaa tttggtagtg aatttagctt
      121 agaagttaaa gatactgccg aagctatccg agccttatgt acacagatta gcggattgcg
      181 tgaggcatta cgagacggtg tttataaagt ccgtatcggc aaacagtatt tagacccgtc
      241 agcccttgaa aaagggcttt tttattgtct gaagaaaggg caaaccattc attttacccc
      301 tgttatcaaa ggagcgaaaa gcggtggcgt gtttaatttt gttttaggtg cagccttgat
      361 cggagccgca ttttttactg gcggtgcttc tattgcggct tggggagctg gagcaaaaat
      421 gatgggtatg ttaggggctt cgatgttact aggaggagtt tcccaaatgc tcaccaaaat
      481 gccaaaagcc cccacaatgg gtaatgaaac agaaaaagaa agctcaacgg ctttttcaaa
      541 tttaaataac ttggtgactc aaggcaaacc tgtgccgttg gcttatggct taattcggac
      601 cggctcgctt gtgatatcgc agggagttga gacgatcacc attaaagaaa accaaccggc
      661 aagcaacaag aaaacaggct ttagaaaata agggataatt accgattcag cacaagcaca
      721 gcaacttaat cagttatctg tgaacttgac caaagcagag agcaatttaa atgccaaaat
      781 cacggaagaa aaaaaagctc gtgttgatgc agataaagtg aatgcagata aactcacaga
      841 cataacaagc cgtgttgcaa atgcggaatc aactattacc aatttccaat caaccaaagc
      901 gaataaaagt gaggttgcga gccttgcaca aagttcgttg caggca
//
LOCUS       DANLXK010000246          917 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.250, whole genome shotgun sequence.
ACCESSION   DANLXK010000246 DANLXK010000000
VERSION     DANLXK010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>917
                     /locus_tag="PXD88_002666"
     CDS             <1..>917
                     /locus_tag="PXD88_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL6282177.1"
                     /translation="NKSIPYQSFCWVIGTTSFRTAKLNLKIEAQLLLLDEFFNEVIKE
                     SSWNWNNELQEKYYDFMKDRAFLTGEAKRKDKDAREKTSGLVDIGLITEDRLITDAGR
                     ELLKVTSSGDFETNNVFNINRDSFIYLKQLLKTSIDVSGSIVRPFIAVVKCLTELEFL
                     SYDEFTYFVPLIRDDESAKQIISDIKLYREGKILPEEIIYKRLMQMENYKLAQEEFIA
                     SDVDENLICLVGMNRKSRNYDKPYYKLYENLKKVFLDGENIYESLLNSAKNINQKPGI
                     LWRSLLFKTTNIGVVRKNGKSSIHKQCPF"
BASE COUNT          356 a          106 c          180 g          275 t
ORIGIN      
        1 taataaaagt attccatatc aaagtttttg ttgggttata ggaactacaa gttttagaac
       61 tgcaaaacta aatttaaaaa tcgaggcaca gttgttgctt cttgatgagt tttttaatga
      121 ggtcataaag gaatcaagtt ggaactggaa caatgaattg caagaaaaat attatgattt
      181 tatgaaagat agagctttcc taacaggaga agcaaaaaga aaagacaaag atgccagaga
      241 aaaaacatca ggattggttg atattggttt aattacagaa gatagattga ttacggatgc
      301 aggaagagaa ctccttaaag taacaagtag tggggatttt gaaaccaata atgtgtttaa
      361 tattaataga gatagcttta tctatctaaa acagcttctt aaaacgagta tagatgtaag
      421 tggtagtatc gttagaccgt ttattgcggt tgtaaagtgc ctgacggaac ttgagttttt
      481 aagttatgac gagtttactt attttgttcc gctaattaga gatgacgaaa gtgcaaaaca
      541 aatcatatcg gatattaaat tatatcgaga aggtaaaatt ttaccggaag aaataattta
      601 taagaggctt atgcaaatgg aaaactacaa acttgcacaa gaagaattta tagcctctga
      661 tgttgatgaa aatctaatat gtttagtggg aatgaatcgt aaaagcagaa actatgacaa
      721 gccgtactat aaattgtatg agaatttaaa gaaggtattt cttgatggcg aaaacattta
      781 tgaatcgcta ttaaattctg caaagaatat aaatcaaaaa cctggaatat tgtggagaag
      841 tttactcttt aaaacaacca atattggtgt tgtaagaaaa aatgggaagt cttcaattca
      901 caaacaatgc ccattta
//
LOCUS       DANLXK010000247          903 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.251, whole genome shotgun sequence.
ACCESSION   DANLXK010000247 DANLXK010000000
VERSION     DANLXK010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..173)
                     /locus_tag="PXD88_002667"
     CDS             complement(<1..173)
                     /locus_tag="PXD88_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282178.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKE"
     gene            complement(170..661)
                     /locus_tag="PXD88_002668"
     CDS             complement(170..661)
                     /locus_tag="PXD88_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL6282179.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFADD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEAEQVIEPPTLVENNG
                     WISVKDRLPEIRKEVLITNNFIMIAQFNGESWFKPGGFLGIQPVYGVTHWQPLPEPPK
                     EEK"
BASE COUNT          250 a          188 c          165 g          300 t
ORIGIN      
        1 atttctttca ttgcttcatc aatcgccgtg cgtaaatcgg catttcttgc ccaatgaaaa
       61 tactgctcgt gcggtttggt atagctagca ataataaatt cgtccaccaa atcagaatat
      121 cggacatcta atttgcgttg ggcgataaag tctaagcgtt cggtgtcggt catttttcct
      181 cctttggtgg ttcgggaagt ggttgccagt gggtaacacc atagacaggc tgaataccta
      241 agaatccacc cggcttgaac cagctctcgc cattgaattg agcaatcata ataaaattgt
      301 ttgttatcaa gacttctttg cggatttctg gcaatctgtc tttgactgaa atccagccgt
      361 tgttttctac aagtgttggt ggttcaataa cttgttcagc ttccccaaat aactctgatt
      421 ctctttcttc atcggttagt gggcggatat ctgattttgc tctacctaaa acaacaccat
      481 aaactgcata gggtaaatca taggcttcat agctttcgtg atcatccatg tcatccgcaa
      541 actcataggc ttcagtagca ccatttaaac agctttgttt tgcttgctct aaggtttcgt
      601 gcagatttag gatatgtata tcatttgata catccaccga aaaaaatttg tcttcattca
      661 ttttctttct ccaaaatacc aatagttgag agaataataa gcatactatc tcatgctatt
      721 cttaagtgca tctaaccacg ctccagcatc ttcggctgaa gcgaaatata acccttgatc
      781 aaatagtttt tctatataag aatgtgtagg gaaatttgat tttatcacat tgaaattatc
      841 gccaataaac cacattccat ctcttggttc ttttaatgga caaggaagag tgagagttac
      901 tgt
//
LOCUS       DANLXK010000248          892 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.252, whole genome shotgun sequence.
ACCESSION   DANLXK010000248 DANLXK010000000
VERSION     DANLXK010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..866
                     /locus_tag="PXD88_002669"
     CDS             <1..866
                     /locus_tag="PXD88_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282180.1"
                     /translation="AIAIQNSVNYLYEIAERQPPCNFELCWKNCAAHYLAIKSAESNN
                     ERDLNLFLDYINEPKDSTFTVAPLYKDNTLETRMILEIIKDDNQIGFGFCEASDLSLI
                     EDETKKIKAAMSLIDDLDPDTSNEIKCFIDTIYLTKEGLNGERFMRSGTNFYMWGMMF
                     LYINKEHSILYYADHIIHECAHTALNIINATDELVTNSADERFKAPLRKDTRPMIGLF
                     HALFVLHRICSSFQKMKEKIDDVYYDEFNHRLNDNLLKLHETYQTVRENAKTTEIGEK
                     ILNEIAKTWKL"
BASE COUNT          330 a          116 c          155 g          291 t
ORIGIN      
        1 ttgctatagc aatccaaaat tctgttaatt atttatatga aattgcagaa cggcagcctc
       61 cttgtaattt tgaactatgc tggaagaatt gtgcagcaca ttatttagca ataaaatctg
      121 cagaaagtaa taatgaaagg gatttaaatt tattccttga ttatattaat gagccgaaag
      181 attctacatt tacagtagct cctttataca aggataatac actagaaaca agaatgatct
      241 tagaaattat taaagatgat aaccaaattg ggtttggatt ttgtgaggct agtgatttat
      301 ctttaattga ggatgaaact aaaaaaatca aggcagcaat gagcttaatt gatgatttag
      361 accctgatac ttctaacgag ataaaatgtt tcattgatac aatttattta acaaaagaag
      421 gccttaatgg cgagcgattt atgcgttctg gcacaaattt ttatatgtgg ggaatgatgt
      481 ttttgtatat aaataaggaa cactctattc tttattatgc agatcatata attcatgaat
      541 gtgctcatac agctcttaac attataaatg caactgatga attagtaaca aattcagctg
      601 atgaacgttt taaagcacct ttaagaaagg atactcgtcc tatgattggg ctatttcatg
      661 cgttgtttgt actccataga atatgttcct cctttcaaaa aatgaaagaa aagatagatg
      721 atgtttatta tgatgaattt aaccatagat taaatgataa cctgttgaag ttacatgaaa
      781 cataccagac tgttagagaa aatgcaaaaa cgacagagat tggtgagaaa attttaaatg
      841 aaattgccaa aacttggaaa ctttaatcaa tctgaaatta tgatgagaat gt
//
LOCUS       DANLXK010000249          891 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.253, whole genome shotgun sequence.
ACCESSION   DANLXK010000249 DANLXK010000000
VERSION     DANLXK010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.253"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(6..491)
                     /locus_tag="PXD88_002670"
     CDS             complement(6..491)
                     /locus_tag="PXD88_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282181.1"
                     /translation="MIQNDPRDAIILSLLANAVYGGHNNSQISYQETEEVNLYARLRQ
                     VEGDVREIKSNYLTKEAFYKAGGSTLIALVVTAGIALWTVYSHLDTKVEARFSKIDDK
                     FVQVETNIKNLDIRLTKVESRLDNVEQRLDNVEQRLGNMEKKIDGVDNKLDLLLQQFK
                     R"
     gene            complement(496..876)
                     /locus_tag="PXD88_002671"
     CDS             complement(496..876)
                     /locus_tag="PXD88_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282182.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
BASE COUNT          251 a          178 c          143 g          319 t
ORIGIN      
        1 ttattttatc ttttgaattg ttgtagtaac agatcgagtt tattatcaac cccatctatt
       61 ttcttctcca tattgcctag tcgctgctca acattgtcta gtcgttgttc gacattatcc
      121 aatctagatt caactttagt gaggcgaata tcaagatttt tgatattggt ctctacttgg
      181 acaaacttat catcaatttt cgagaatcga gcttcaactt tggtgtcaag gtgtgaatat
      241 actgtccata atgcaattcc agcagtaact actaatgcaa tgagtgtaga gccaccagct
      301 ttataaaaag cctctttcgt caaataattt gacttgattt ctcttacatc gccttcaact
      361 tgtcttaatc gagcatataa attcacttct tccgtctcct gataactaat ttgtgaatta
      421 ttatgcccgc cgtatactgc atttgcaagt aaggatagta tgattgcatc tctaggatca
      481 ttttgaatca ttggtctatt cattttgtga gcccttaatc cattctaaaa ttctctctct
      541 gtcgaaaaaa agcatattat tacagcaaac acaagtgaca ataacggctg ttctcgcttt
      601 ttggtctaac caatattttg ttccttcccg ttcattgaaa tgcaaagaat gaaattcagg
      661 agctgcaaat ttcataactt catcaggaga tggctctatt cggtatggaa tggttggaac
      721 accgataatt ttctctccgc ataattccgt aaaagtgtca tagccatcgt gtaaataatg
      781 ttcttggcta ttacaaatag ggcaagttaa attccgccca gtacgttgcg tgataaaatc
      841 cgcaaactgt tcaggtttaa tgcgtttatt attcatttta acttcctttc t
//
LOCUS       DANLXK010000250          886 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.254, whole genome shotgun sequence.
ACCESSION   DANLXK010000250 DANLXK010000000
VERSION     DANLXK010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.254"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>886)
                     /locus_tag="PXD88_002672"
     CDS             complement(<1..>886)
                     /locus_tag="PXD88_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282183.1"
                     /translation="VALYVFHLRSLKHIKNLESNSYLDEEGRDTVNKYKAFFSIFEAE
                     IRDATCICDNKIVTINGEVCCDIKEVARKIVIEFLNEVDIGNKVKFYYPDERHELFVE
                     LLIVLATLRIYRNRNIFFFEKGFFNFFPEFITILGTGAFNGFLDFPSLVGKVFPEIID
                     TINEGLDLDIAIENFEVLSQEEMTECMGLYEQALIKKAEEGEIGLLNVDEINSFYEDN
                     SELILLAKQPMVEEIIPKPDSKASSAILKFFDSNSNILIAKLKESGLQLSAVALQNDQ
                     NIARVANVVYNLLPGMVRI"
BASE COUNT          293 a          178 c          108 g          307 t
ORIGIN      
        1 aattcttacc atgcccggca ataagttata aacgacattt gctactcgtg cgatattttg
       61 gtcgttttgt aatgccacag cacttaattg caaaccactt tcttttaatt tagcaattaa
      121 gatatttgag tttgaatcaa agaattttag aattgcagag gaggctttgc tatctggttt
      181 agggattatc tcttcaacca taggttgttt agcaagtaag attagctcac tattatcttc
      241 ataaaagcta tttatttcat caacatttaa taaaccaatt tcgccttctt cagctttctt
      301 aatgagagcc tgctcatata aacccataca ttcagtcatt tcttcctgac tcaacacttc
      361 aaagttctca atcgcaatat ctaaatctaa accctcattt atcgtatcaa taatttctgg
      421 aaaaaccttt cctaccaaac tagggaagtc taaaaatcca ttaaacgcac cagtcccgag
      481 aatagtgata aattcgggaa aaaagttaaa aaaccccttt tcaaagaaga atatatttct
      541 attacgatat attcttaatg ttgctagaac aatgagcagc tctacaaaaa gctcatgtct
      601 ttcatctggg taataaaact taactttatt accaatatcc acttcattta gaaattctat
      661 aacaattttc cttgctacct ccttaatatc acagcacacc tcaccattaa ttgttacaat
      721 tttattgtca caaatacatg ttgcatctcg aatctctgct tcaaaaatag agaaaaatgc
      781 cttgtattta tttaccgtat ctcttccttc ttcatctaaa taactgttag attctagatt
      841 tttgatatgt ttcaaagatc ttaagtgaaa gacatataac gctact
//
LOCUS       DANLXK010000251          869 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.255, whole genome shotgun sequence.
ACCESSION   DANLXK010000251 DANLXK010000000
VERSION     DANLXK010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.255"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..624
                     /locus_tag="PXD88_002673"
     CDS             <1..624
                     /locus_tag="PXD88_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL6282184.1"
                     /translation="NTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLN
                     KKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYK
                     NNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYR
                     KGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC"
BASE COUNT          350 a          130 c          138 g          251 t
ORIGIN      
        1 aacacagttt taaacacact acaatgcgat tatgtgctgt tttcttctga agacaactac
       61 caagtcatca tcaatctaaa aaaagctgat taccccaaaa atgaagcaaa tttcattaca
      121 atgactttaa acaagaaatt tggtgatgca aaattttccg gtgcaaacca ttacttaaga
      181 tgtgccagct tcttcaacaa gaaaagcaca aacaacaatg aaaaatcagt tttagttgat
      241 tttacaaaca caaagacaga agaagacaat aaatgttatt ttgataactt attatctagt
      301 tataaaaata acaatgtaaa acttgagcct ttagacatca aaattattga tgagcttgga
      361 gatgataaag cagttattgc acaaaaagaa attcaagcag aaattgcttt gtgtaaacgt
      421 atattcaaac aattagattg gtctgctgtt gattttagaa ttgttaagcg tctgtacagg
      481 aaaggatttt cagaaaatga aattgctgtt gcacttgtca gatttactga ttttgaagac
      541 agacattgtg attcacatga ttatttgaca agaacaatca caaaagccat tcaaaactat
      601 caacaatgct caaaagcttg ttagatgtta taaggaaagt taaaaatcaa caaaagattt
      661 gacaaattta tataaaatcc ttattatata tgaaaaggaa gcgtagcctt aaaacgcaaa
      721 tgtgggttag cacatggtca atctgaaact aatctaggat atttaaggtc tagcagatgg
      781 caagcatcag aaaaacttga aactaatcta ggatatttaa ggcctagcag atggcagaca
      841 tcagaaaaac taacacttaa attttatat
//
LOCUS       DANLXK010000252          862 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.256, whole genome shotgun sequence.
ACCESSION   DANLXK010000252 DANLXK010000000
VERSION     DANLXK010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.256"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            10..744
                     /locus_tag="PXD88_002674"
     CDS             10..744
                     /locus_tag="PXD88_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6282185.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FVLRVESEVLLEKAKILVEQEIENMR"
BASE COUNT          293 a          140 c          170 g          259 t
ORIGIN      
        1 tatggtttat tggcgagatc ttcttatttt gcacgtttag cagaatggac tttattagaa
       61 catttacttg tcaaacagcc tgaaaatatt tcggtatgtt cattcggtca atcattcggt
      121 acaagcggtc gtttagatgc agaatattac caacctaaat ttgcaagctt atttgcacaa
      181 ttagccaatt tcaaaacgat gaaattaggt gagattgtta atttacaaaa atcggtagaa
      241 ccgggctcgg aagcttatca aacagaggga ataccctttg tgcgtgtatc ggatttatct
      301 aaattcggca tcagccaaac agataaatac ttacatccga aagattttgg caatgttgta
      361 agacctaaaa aagacagtat attactgact aaagacggca cagtcggcat tgcttaccgt
      421 gttccgcaag atttgaatgt gattacatca ggggcaattg tgcatctaga gcttaaaact
      481 gacgaagttt tacccgatta tttggcgtta gcattgaatt ctcctgctgt acaattacaa
      541 gcggaaagag atgcgggagg ctctattatc caacattgga aaccgtctga aattttagat
      601 gtagtgattc cggtattacc taaaaatatc cagcaaacca ttagcgacaa agtacaacaa
      661 agttttgtat tgagagtaga aagtgaagtt ttactggaaa aagctaaaat acttgtagaa
      721 caagaaatag aaaatatgag gtaataatgc ctaatcataa tcaagatttg aaaaaagagt
      781 ggtttaataa agcaaggata gattaccact ctcctttttt aatgttatgg ctcagttgta
      841 atagctggta taacttccat ta
//
LOCUS       DANLXK010000253          861 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.257, whole genome shotgun sequence.
ACCESSION   DANLXK010000253 DANLXK010000000
VERSION     DANLXK010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.257"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>861)
                     /locus_tag="PXD88_002675"
     CDS             complement(<1..>861)
                     /locus_tag="PXD88_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL6282186.1"
                     /translation="FELISRTDLAKLSGLAPASVTNLTKILIDNHFILERTVQTTLSR
                     GRPSVGLAVSNFFWQLLCVTVSSHKIEISLCKLNGAEIYKQDYTISAENYPRLNDFIL
                     NFITNFRQLYCVNTSQLLAVSISVIGKINAEKDSITQLGNKNIFCNITSKLSPLFHCP
                     ILLSEHFQLWLLAESTVGSLINQDNAIFLQLDDTVNLSVLLSGSLLSKQSKMNVDNML
                     MPRFSHLSDEIFPELDEIHRYKLVNQVTFPAIVRLIDRYLPNNLKSQEQKISWLCQKI
                     DENQPLALAI"
BASE COUNT          298 a          137 c          150 g          276 t
ORIGIN      
        1 aaaatagcta atgcaagcgg ttgattttca tcaatttttt gacaaagcca gctgattttc
       61 tgttcctgac tttttaaatt attaggcaaa taacgatcaa tgagtctcac aatagctggg
      121 aacgtcacct gattgactaa tttatagcga tgaatttcat ctagttcagg gaatatttca
      181 tcactgagat ggctaaatct aggcataagc atattatcaa cattcatctt tgattgttta
      241 gacagtaaac taccactaag caatacactt agattcacag tatcatctaa ttgtagaaaa
      301 atagcattat cttggttaat taatgagcca accgtagatt ctgcaagcaa ccacagctga
      361 aaatgttcac ttaataaaat aggacaatga aacagcggcg agagtttaga tgtaatgtta
      421 cagaatatat ttttgtttcc caattgagta atactgtctt tttctgcatt aattttaccg
      481 atcacactaa tagatacagc caggagctga ctagtattaa cacaatatag ttggcggaaa
      541 tttgtaataa agttaagaat aaaatcattt agcctaggat aattttctgc tgagattgta
      601 taatcttgct tataaatttc tgcaccattg agtttacaaa gtgaaatttc aattttatga
      661 gatgaaacag taacacaaag tagttgccaa aaaaaattag aaacagctaa tccaacggag
      721 gggcgacctc tggataaagt agtctgaacc gtacgttcta aaatgaagtg gttatctatt
      781 agtattttag tcagatttgt tactgaagct ggggctaacc ccgatagttt agctaaatct
      841 gttcttgaaa tgagttcaaa t
//
LOCUS       DANLXK010000254          859 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.258, whole genome shotgun sequence.
ACCESSION   DANLXK010000254 DANLXK010000000
VERSION     DANLXK010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.258"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>859
                     /locus_tag="PXD88_002676"
     CDS             <1..>859
                     /locus_tag="PXD88_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL6282187.1"
                     /translation="THTIKTETIAGGRKAIAGIAFGATADNRNAESSVIVMADKFEVV
                     KNAQDGTPVRLFGVVENKVAINGNLIATGSISGDHINANSVRTAVLTAGAIKTEHLAA
                     GQISADKLAIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRTIFNRNEQ
                     DNYGLKNGGLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRG
                     QAKLVIENIEKPGGAYLGRIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFAL
                     RLDNIQGKA"
BASE COUNT          264 a          151 c          212 g          232 t
ORIGIN      
        1 ctacccatac catcaaaacc gaaaccattg ccggtggacg caaagcgatt gccggtattg
       61 catttggtgc aacggcagat aaccgtaatg cggaatcttc tgtgattgtg atggcagata
      121 aatttgaggt cgtgaaaaac gcccaagacg gcacgccagt aagactattt ggcgtggtag
      181 aaaataaagt agcgattaat gggaatttaa tcgcaacagg ctcgatttca ggagaccaca
      241 tcaatgcaaa ttccgtcaga actgctgtat tgactgcagg agcgattaaa acggagcatt
      301 tggcagcagg gcaaatatcg gcggataagt tagcgattgg gctaggtggg aatttgctgg
      361 ttaatcctat ttttgcaaca cccgatttgt caatagctcc gtttggctgg aactactggc
      421 gaggagaagt tggtgatcgg ctaaatattg acacccgtac tattttcaat aggaatgaac
      481 aagataatta cggactaaaa aatggaggac taccaaatga gttagtattt tcgatgcggt
      541 atagcactac aaaggaaacc tctgatactg ggcgaattgg gtggttatct caggatatta
      601 atgttgtgcc taataaaaaa tatattgcct ccgtatggtt agcttgtcat cgtgggcaag
      661 ctaaattagt cattgagaat atcgaaaaac ctggtggtgc ttatttaggt cggataggca
      721 acagcgaggt aattactggc tatagtgctc atcaaggcga atttaaaaat atgaaacggg
      781 ttaaggttgt atttactgca cctacttcag gctgtattcg tttcgcatta cgattagata
      841 atattcaagg taaagctaa
//
LOCUS       DANLXK010000255          830 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.259, whole genome shotgun sequence.
ACCESSION   DANLXK010000255 DANLXK010000000
VERSION     DANLXK010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.259"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..710
                     /locus_tag="PXD88_002677"
     CDS             <1..710
                     /locus_tag="PXD88_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282188.1"
                     /translation="WKKIRIDFTDTVKCQFCSRMITSGKAIVVQNELGNISFSGPSCA
                     QNKNGQNVVNPKEKIVDITKGCLLHEPTTNDKTDKQVDVEQDNFTSIHDDEVHNYLDN
                     NAVNAYLTLRFEKLSHLTSIIKSQKLNEIYHNYELTGQISQKDESYIRVIMYGEAYPL
                     YTYQNLQAVYAAEYWLQSFIQHNPENDLNFIQDTLNQLRRKLTLTEKQIMGINNWFKN
                     SDGKMVKLKTNAFVRGK"
BASE COUNT          311 a          119 c          144 g          256 t
ORIGIN      
        1 tgtggaaaaa aattaggatt gattttactg atacagtgaa atgtcaattt tgcagtagaa
       61 tgattacatc aggcaaagct attgttgttc aaaatgaact tggcaatatc tctttttcag
      121 gaccgtcttg tgctcaaaat aagaacggtc agaatgtagt caatcctaaa gagaaaatag
      181 ttgatatcac aaagggatgt ttacttcatg agccaacaac aaatgataaa acggataagc
      241 aagtagatgt tgagcaagat aatttcacat ccatacacga tgacgaagta cataattatt
      301 tggacaataa tgctgttaat gcatacctga ccttaagatt tgaaaaacta tcgcatttaa
      361 cctcgattat aaaatctcaa aagttaaatg aaatctatca taactatgaa cttacagggc
      421 aaatatctca aaaagatgaa agttacataa gagtgattat gtatggtgag gcatatcctt
      481 tgtatacata ccaaaactta caagctgttt atgctgctga atattggctt caatcattta
      541 ttcagcataa tccagagaat gacttaaatt ttatacaaga cacattaaat cagctcagaa
      601 gaaagctaac attaactgaa aaacagatta tgggcataaa taattggttt aagaattctg
      661 atggaaaaat ggtgaaatta aagacaaatg cttttgtaag agggaaatag ttaacataat
      721 tgtggtggcc acttattttg ttacgtaggc ccgacgtaag actggtttta aaagactctt
      781 tcctattatt tgcttgctta ttttgacaaa ttcaagttat atgtaattca
//
LOCUS       DANLXK010000256          825 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.260, whole genome shotgun sequence.
ACCESSION   DANLXK010000256 DANLXK010000000
VERSION     DANLXK010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.260"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..552
                     /locus_tag="PXD88_002678"
     CDS             <1..552
                     /locus_tag="PXD88_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6282189.1"
                     /translation="AGQERCIADEVPFEIPQNWTWVRLGEVGDWSSGATPNRHNPEYY
                     NGTIPWLKTGDLNNGIISSIPEFITDKALQECSVRLNPVGSVLIAMYGATIGKLGILK
                     IAATTNQACCACIPFNGIYNKFLFYYLMSQKAEFQKKSEGSGQPNISKEKIINYLFPL
                     PPIHEQHRIVQKIEQLFAEIEKL"
BASE COUNT          286 a          138 c          152 g          249 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggact
       61 tgggtgaggt tgggggaagt aggtgattgg agttcaggtg caactccaaa ccgacacaat
      121 cctgaatact ataatggtac gatcccgtgg ctaaaaacag gagacttaaa caacggaata
      181 atttcatcta tacctgaatt tattacagat aaagcattgc aggaatgttc tgtaagatta
      241 aatcctgttg gttcagtttt gatagcaatg tatggagcga caattggtaa gcttgggata
      301 ttaaaaatag cagcaacaac aaatcaggct tgctgtgcgt gtattccttt taatggaatt
      361 tataataaat tcttatttta ttatttgatg tcgcagaaag cagaatttca gaaaaaaagt
      421 gagggaagtg ggcaaccaaa tatatcaaag gaaaaaatta tcaattattt atttccttta
      481 ccaccaatcc acgaacaaca tcgcattgtt caaaaaattg aacaattatt tgcagagatt
      541 gaaaaattgt aggagtcatc atcgctttct tgggcgtgtt ggatacgccc tacagtcact
      601 aaattattga tcttttatca tatcggtttt caaccaacct aaaaggaaac ctatatgatc
      661 catctatttg aaaagcacct taatcaatct aatcttgctg aaaataccca atcagcttat
      721 ctttttgcgg taaaacaata tcacaaaaaa tttgatcagt tatctaaaat caatttacag
      781 cgatataagg tattcttaat tgaaaactat aagcctcaga ctgtt
//
LOCUS       DANLXK010000257          807 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.261, whole genome shotgun sequence.
ACCESSION   DANLXK010000257 DANLXK010000000
VERSION     DANLXK010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.261"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(345..>807)
                     /locus_tag="PXD88_002679"
     CDS             complement(345..>807)
                     /locus_tag="PXD88_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282190.1"
                     /translation="GDRNYQLYIDLATGELVSKLGKGLTTREFDAAVKAFENAFNAKD
                     TAENTSPAESKETEQENKQETTKLVITKPTLKGSEKQIAWADEIINLFIAKIGDTSIP
                     VTATQEQITQAQAMVDNFFAMTNAGKWIEKFKGLNDSSEPKQFWLSVKYGW"
BASE COUNT          187 a          173 c          145 g          302 t
ORIGIN      
        1 ttgcagtatt gatagtatcc aagccaaaac gccccctgac aatcaaaagg catcccgtct
       61 ttagggtcct cgaggtcgcc tggtatttta tccattaatc ttgctatctc tccattgtta
      121 atagatagct ctctgcgact agagataaac cctatccctc ttatagggta tctcaagatt
      181 attgtctgta cgtttgttgg cacatcgtca ccataagtag cagcgacaat ttgcccgata
      241 atgcgcataa tttgtggtgt tacttgtgta gtcataataa tctccagtta tctgtttgtt
      301 ttagccgtaa gcctttgctc ttacggctta tttgttatct caatctacca tccatatttt
      361 acggataacc aaaattgctt tggttcgcta ctatcattta gacctttaaa tttttcgatc
      421 cactttccag cgtttgtcat tgcaaaaaaa ttatctacca ttgcttgagc ttgagtaatt
      481 tgttcttgcg ttgctgttac tgggatagag gtatcaccaa tcttcgcaat aaaaagattg
      541 atgatttcgt ctgcccaagc gatttgtttt tcagagcctt ttaatgttgg ttttgtgatt
      601 acaagcttag ttgtttcttg tttgttctct tgctctgttt ctttgctttc tgctggcgat
      661 gtattttcag cggtgtcttt agcattaaaa gcgttctcaa atgcttttac ggcagcgtcg
      721 aactctcttg ttgttaatcc tttgccaagt ttgctcacta actcacctgt ggctaagtca
      781 atgtacaact gataattccg atcacct
//
LOCUS       DANLXK010000258          791 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.262, whole genome shotgun sequence.
ACCESSION   DANLXK010000258 DANLXK010000000
VERSION     DANLXK010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.262"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            49..720
                     /locus_tag="PXD88_002680"
     CDS             49..720
                     /locus_tag="PXD88_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL6282191.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
BASE COUNT          252 a          133 c          163 g          243 t
ORIGIN      
        1 aaagtttacc tcattatagg tattctaatt atttttgagg atatgaaaat gaaaaaatca
       61 actttagcaa ttattttagg tggggcatta ttaactggaa ctgcggtggc acatcaagca
      121 ggtgatgtga tattccgtgc cggtgcggta catgttaagg caaattcaag ttcagatgca
      181 aaatcaaaag cagcgacagg tattgatgta gatttagaag tgaaaaacaa tactcagtta
      241 ggcttaactg caacttatat gttagccgat aatgtgggta ttgagttatt aggtgcaacc
      301 cctttctctc ataaaattaa tgccaaagcc aaagttttag aatcaggtgc agaagtagat
      361 ttggatagag ttgttatctt aaaacaatta ccaccgagcc tttatgccca atactatttc
      421 tttgagctaa ctgcaaaagt aaaaccttac gttggtgcag gtttaaatta cactcgcttc
      481 taccacgcta aatcagttag ccctgctgtt actgacttaa gtgtaaaaaa acattctttc
      541 ggaccggtag caaacctagg tgttgatgta aaattaaccg ataacatcta cttcaacgcg
      601 gcagcttggt acacacgcat taaaacaacc gcaaaattta aagcagcagg tgcagatcac
      661 gaagtaaaag taaaacttga tccggttgtc ttatttgccg gtttcggggt gaagttctaa
      721 ttatttgttg ggaacgagtt gggctaatct tagtgattag tccttttttg ttaaagttgt
      781 ttgaatatag c
//
LOCUS       DANLXK010000259          773 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.263, whole genome shotgun sequence.
ACCESSION   DANLXK010000259 DANLXK010000000
VERSION     DANLXK010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.263"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..506
                     /locus_tag="PXD88_002681"
     CDS             <1..506
                     /locus_tag="PXD88_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL6282192.1"
                     /translation="FIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIAEIEKT
                     VELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNIHRLAP
                     NKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLKAIEDL
                     EQELLFK"
     gene            complement(510..583)
                     /locus_tag="PXD88_002682"
     tRNA            complement(510..583)
                     /locus_tag="PXD88_002682"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(549..551),aa:Cys,seq:gca)
     gene            complement(599..674)
                     /locus_tag="PXD88_002683"
     tRNA            complement(599..674)
                     /locus_tag="PXD88_002683"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(639..641),aa:Gly,seq:gcc)
BASE COUNT          265 a          150 c          144 g          214 t
ORIGIN      
        1 tttttatcgc ccaaataaaa caaaacctct cggaattaaa tgtattttca acggataata
       61 tttttctgaa ttcaccctat ttctcacagc aaaccggttt ggtgagtgtg ttcattgctg
      121 aaattgaaaa aacagttgag ctattattga accaaactga ggtgttatat agtgaatttt
      181 acgctgaaaa attggttaaa caagttgatg cattaaagaa tgccgtagaa aaaatccaaa
      241 gtaagccaga atcagctcaa ttccattctt cctatcaatt ttctccaaat attcatcgtt
      301 tagcgcccaa caaacgctta caagaatacc gtaaagcgtt acgtgcattg aacgagaaaa
      361 ttagctggtt agttgagcaa aatttaaata cgcaaaatga agcaactaaa caaaccctgc
      421 aaaatcaaat tacagagaca gaatatcgca aaatgaaatg tttaaaagca attgaagatt
      481 tagaacaaga gttgctattt aaatagtgat ggaggcgtgt cccggagtcg aaccgagcta
      541 catggatttg caatccagtg cataaccgct ttgctaacac gccataagat ttggaaattg
      601 gagcgggaaa cgaggctcga actcgcgacc ccgaccttgg caaggtcgtg ctctaccaac
      661 tgagctattc ccgcatctga attcccacaa cattgcgctg tggaacgagg tgcattttac
      721 ggatttatca ttttatgtca atgctaaatt taacattcta gattcaaatg ctg
//
LOCUS       DANLXK010000260          758 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.264, whole genome shotgun sequence.
ACCESSION   DANLXK010000260 DANLXK010000000
VERSION     DANLXK010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.264"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(296..>758)
                     /locus_tag="PXD88_002684"
     CDS             complement(296..>758)
                     /locus_tag="PXD88_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282193.1"
                     /translation="GDRNYQLYIDLATGELVSKLGKGLTTRAFDAAVKAFENAFNAKD
                     TAENTAPVESKETEQENKQETTKLVITKPTLKGSEKQIDSANEIINLFIAKIGDTSIP
                     VTATQEQITQAQAMVDNFFAMTNAGKWIEKFKGLNDNSEPKQFWLSVKYGW"
BASE COUNT          170 a          157 c          139 g          292 t
ORIGIN      
        1 gcatcccgtc tttagggtcc tcgaggtcgc ctggtatttt atccattaat cttgctatct
       61 ctccattgtt aatagatagc tctctgcgac tagagataaa ccctatgcct cttatagggt
      121 atctcaagat tattgtctgt acgtttgttg gcacatcgtc accataagta gcagcgacaa
      181 tttgcccgat aatgcgcata atttgtggtg ttacttgtgt agtcataata atctccagtt
      241 atctgtttgt tttagccgta agcctttgct cttacggctt atttgttatc tcaatctacc
      301 atccatattt tacggataac caaaattgct ttggttcgct attatcattt agacctttaa
      361 atttttcgat ccactttcca gcgtttgtca ttgcaaaaaa attatctacc attgcttgag
      421 cttgagtaat ttgttcttgc gttgctgtta ctgggataga ggtatcacca atcttcgcaa
      481 taaaaagatt gatgatttcg tttgccgaat caatttgttt ttcagagcct tttaatgttg
      541 gttttgtgat tacaagctta gttgtttctt gtttgttctc ttgctctgtt tctttgcttt
      601 ctaccggcgc tgtattttca gcggtgtctt tagcattaaa agcgttttca aaagctttta
      661 cggcagcatc aaacgctctg gttgttaatc ctttgccaag tttgctcact aactcgcctg
      721 tggctaggtc aatgtacaac tggtaattcc gatcacct
//
LOCUS       DANLXK010000261          737 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.265, whole genome shotgun sequence.
ACCESSION   DANLXK010000261 DANLXK010000000
VERSION     DANLXK010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.265"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            78..>737
                     /locus_tag="PXD88_002685"
     CDS             78..>737
                     /locus_tag="PXD88_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL6282194.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAIE
                     NP"
BASE COUNT          243 a          110 c          141 g          243 t
ORIGIN      
        1 agataatcct gcttatattg agagctatga attgcttgaa aaattaggcg ttcagattgt
       61 tgatattaga gaataaaatg aagaaatatt taatttcatt agaaaaagat gtaaaaagac
      121 gagagctatt ttttagccag cctaatacgg aagattttga ggtgttcagt gccattaata
      181 caatgagtag tgattgggag gcattaaata accattttga tttggctctg tttgaacagc
      241 gatatgggcg taaaaccact aagggcgaag taggttgtac tttaagccat ttagccgttt
      301 accaaaaaat tgccgaagat agcactattg cggaagatga ttactgccta gtctgtgaag
      361 atgatgcctt atttgccgat gatttccaaa aacatcttga tgctttatta gcacaaaatt
      421 taaaagtcga tattatttta gttgggcagt cgaaaattcc aacttttaac gatagcgaat
      481 tagagcttaa ttacccatca acctttggct ttttgcaaaa aaatattccg aatagccaat
      541 ataaatatgc ttattcttac ctgaattatt ttgctggtac ggttgcatat ttaattaaaa
      601 aatcgaccgc ttgtcagttt ttagcacaat gtgccggaaa aaatccatac tggcttgccg
      661 atgattttat tttatttgaa aagaatttca aatttgatgt gttaattgtc cgcccgttaa
      721 tggcgataga aaatcct
//
LOCUS       DANLXK010000262          724 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.266, whole genome shotgun sequence.
ACCESSION   DANLXK010000262 DANLXK010000000
VERSION     DANLXK010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.266"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            141..>724
                     /locus_tag="PXD88_002686"
     CDS             141..>724
                     /locus_tag="PXD88_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL6282195.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRKNSKFISVSNDFCIIYA"
BASE COUNT          240 a          133 c          136 g          215 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt gaaaataatc
      661 cgaaaggtag aaagaattct aaatttattt ctgtaagtaa tgatttttgt attatttatg
      721 ctaa
//
LOCUS       DANLXK010000263          711 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.267, whole genome shotgun sequence.
ACCESSION   DANLXK010000263 DANLXK010000000
VERSION     DANLXK010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.267"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>711
                     /locus_tag="PXD88_002687"
     CDS             <1..>711
                     /locus_tag="PXD88_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL6282196.1"
                     /translation="ATVEVGIVTGANDFFLVNDHIVSKYKLDRFVYPMFGKSQHCKGI
                     IYDNEQHFENKEKNLPTNFIYLEDNESNLPLLVQTYIKEGEDAEYHKRYKCKIRKPWY
                     KVPSVYSTNIGMLKRSHEAPKLILNKLGAYTTDTAYRIKSNKFQDEILVCCFLNPLTM
                     ILSELNGRFYGGGVLELVPSEIRNLYIPIIENIDFNIEELNEEVKAGNIENVIRNNGE
                     KILTNLGFSQEDNAMLMSI"
BASE COUNT          275 a           80 c          131 g          225 t
ORIGIN      
        1 gcaacggtgg aagttggtat agttacggga gccaatgatt ttttcttagt taatgatcat
       61 attgttagca agtataagtt agatcggttt gtttatccta tgttcggaaa aagtcagcat
      121 tgcaaaggaa tcatatacga taatgaacaa cattttgaaa ataaagaaaa aaatttgcca
      181 actaacttta tttatttaga agataatgag agtaatcttc ctttacttgt acaaacttat
      241 ataaaagaag gtgaggatgc ggagtatcac aaaagatata aatgcaaaat aagaaaacca
      301 tggtataaag ttccatcggt ttattcaact aacataggaa tgctgaaaag aagtcatgaa
      361 gcaccaaaac taatattgaa taaattgggg gcttatacta ccgatactgc gtatcgtata
      421 aagtcaaata aatttcaaga tgagattctt gtgtgctgtt tcctaaatcc attaactatg
      481 attttatctg agttaaatgg aaggttttat ggtggaggcg tattagaatt agttccttct
      541 gaaattagaa atctatatat tccaataatt gagaatattg attttaatat agaagaatta
      601 aatgaagaag ttaaagctgg aaatatagag aatgtcataa gaaacaatgg tgaaaaaatt
      661 ttaacaaatt taggcttttc tcaagaagat aatgccatgt taatgagtat a
//
LOCUS       DANLXK010000264          695 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.268, whole genome shotgun sequence.
ACCESSION   DANLXK010000264 DANLXK010000000
VERSION     DANLXK010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.268"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..119)
                     /locus_tag="PXD88_002688"
     CDS             complement(<1..119)
                     /locus_tag="PXD88_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005697567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282197.1"
                     /translation="MAVSAYIGIPGSGKSYEVVKSVILPAVASNRRVVSNIYG"
     gene            complement(129..422)
                     /locus_tag="PXD88_002689"
     CDS             complement(129..422)
                     /locus_tag="PXD88_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HDL6282198.1"
                     /translation="MFKVIFMALSAIVNYLISDFLIKGVIFLSVYFLTSELLPVVIEM
                     LVSRKLIPDLNALFGQLPESMWYFLNIFQIPMAISLMISAMISRFVRRMPFIG"
     gene            complement(431..631)
                     /locus_tag="PXD88_002690"
     CDS             complement(431..631)
                     /locus_tag="PXD88_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282199.1"
                     /translation="MLPDLQNFELNKRTAQCPVWTFNIEYLRFHYELREHCDLIEPHK
                     EILKLLFGIIWAFIALRYVLSA"
BASE COUNT          266 a          133 c           95 g          201 t
ORIGIN      
        1 aatccataaa tgttggaaac aactcttcga ttcgaagcaa cagcaggtaa aattactgac
       61 ttaaccactt catacgattt gccgcttcca ggaatcccta tatacgctga aacagccata
      121 gcactcctct atccaataaa tggcatacgt ctaacaaaac gtgaaatcat tgctgaaatc
      181 attaaagaaa tagccattgg tatctgaaaa atatttaaaa aataccacat actttcaggc
      241 aattgcccaa ataacgcatt taaatcaggt atcaattttc tagacacaag catctctatt
      301 actacaggaa gtagttcaga agttaaaaaa tagacagata aaaatatgac acccttaatt
      361 aaaaaatctg aaatcaaata attcacaatt gctgatagtg ccataaaaat cactttaaac
      421 atttatcctc ctaagcactt aatacataac gtaaagcaat aaacgcccaa ataatgccga
      481 ataatagctt taagatttct ttatgtggtt ctatcaaatc gcaatgttct ctaagttcat
      541 aatgaaatct caagtattca atattaaatg tccaaacagg gcattgtgcg gttcgtttat
      601 tcagttcaaa attctgtaaa tctggtagca attttttaaa aggggatata attgattccg
      661 ccgtaggaac ttccagatca ggcaaattaa tatca
//
LOCUS       DANLXK010000265          691 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.269, whole genome shotgun sequence.
ACCESSION   DANLXK010000265 DANLXK010000000
VERSION     DANLXK010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.269"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>691
                     /locus_tag="PXD88_002691"
     CDS             <1..>691
                     /locus_tag="PXD88_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL6282200.1"
                     /translation="NEQARNRKNYINGFVPTDWIPEITDQMTKSKNLWLKYEEEAKTT
                     LKPYQEETISRVIQDEINKKMAEIGTTTLEIGGKEHELEDLENQINALALTDEEKLAE
                     DVENDLISKLDEAKAALAKNQQTLKEKRDELLGLNNKLDSSPLVKKGKNALAEGTNAF
                     ASGENAIAFGTDSQATGNNAIALGANSKANAESAIAIGKGAQALKEKALALGENAIAN
                     RASAIAIGDNHS"
BASE COUNT          280 a          119 c          135 g          157 t
ORIGIN      
        1 aatgaacaag cacgaaatcg taaaaattat attaatggat ttgtacctac cgattggatt
       61 cctgaaatta cagatcaaat gacaaaatcc aaaaatctat ggttaaaata tgaagaggaa
      121 gccaaaacaa cattaaaacc ataccaagaa gaaacaatat ctagggttat acaagatgaa
      181 attaataaaa aaatggctga aataggtact acaacactag agattggtgg taaagaacac
      241 gagctcgagg atcttgaaaa ccaaattaat gctttagctt taactgatga agaaaaactt
      301 gcggaagatg tggaaaatga tttaatctca aagcttgatg aggctaaagc agccttagca
      361 aaaaaccagc aaacgctcaa agaaaagcgt gatgaattac tagggctaaa taacaaatta
      421 gatagctcac cacttgttaa aaaaggtaaa aatgcacttg cagaaggcac gaatgccttt
      481 gcttctggtg aaaatgccat cgcattcggc acggattcac aagctacagg taataacgct
      541 atcgcactag gtgcaaattc aaaagcaaac gcagaaagtg cgattgcaat tggtaaaggt
      601 gcacaagcat taaaagaaaa agcccttgct ttaggcgaaa atgccattgc caacagagca
      661 tctgctattg cgattggtga taaccattca t
//
LOCUS       DANLXK010000266          690 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.270, whole genome shotgun sequence.
ACCESSION   DANLXK010000266 DANLXK010000000
VERSION     DANLXK010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.270"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..199
                     /locus_tag="PXD88_002692"
     CDS             <1..199
                     /locus_tag="PXD88_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6282201.1"
                     /translation="FNLEKYFCYYLNALNLPSMGLINGIAVPKLNQRNLNSILIAIPP
                     ISEQHRIVEKIEKLFSEIEKF"
     gene            complement(245..>690)
                     /locus_tag="PXD88_002693"
     CDS             complement(245..>690)
                     /locus_tag="PXD88_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL6282202.1"
                     /translation="AATGSRVSELIQIKCEHIKIGYLDLYSKGGKLRRIYIPKSLQKE
                     CSEWLRLNNKHNGFIFLNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRFAK
                     SFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIIDW"
BASE COUNT          235 a          112 c           94 g          249 t
ORIGIN      
        1 ttttaatttg gaaaaatatt tttgttatta tttaaatgca ttaaatttac ctagtatggg
       61 attaattaac ggaatagctg tacccaaatt aaatcaaaga aacctaaact ctattttaat
      121 tgctattcca cctatttctg aacaacatag aatcgttgaa aaaattgaaa aattattttc
      181 ggaaatagag aaattttaga aaaacttata tgtccaaggg cgtgtgaaac acgcccctta
      241 aaaattacca atcaataatt ttattcacaa tttcctgctg ttctgtgctt gtttttcgta
      301 aatagatcct tgtggtttct atgctttcgt gccccattaa atcagcaaga aaagcaatat
      361 cattaaatcg ttctaaaaaa ctttttgcaa aacgatggcg aaatgaatgt ggataaacaa
      421 ttttaggatc taatttatag cgtctagcaa atacttttaa ttggctggca atgccacgag
      481 tagtaattct atcaccatat ttatttaaga aaataaatcc attatgctta ttatttaatc
      541 tcaaccattc agaacactct ttttgcagag attttgggat gtaaattcgt cttaattttc
      601 cacctttaga atagaggtct aaatagccta ttttaatatg ttcacatttt atctggatta
      661 attcacttac tctcgaacct gttgctgcca
//
LOCUS       DANLXK010000267          679 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.271, whole genome shotgun sequence.
ACCESSION   DANLXK010000267 DANLXK010000000
VERSION     DANLXK010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.271"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            279..>679
                     /locus_tag="PXD88_002694"
     CDS             279..>679
                     /locus_tag="PXD88_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL6282203.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQR"
BASE COUNT          221 a          145 c          130 g          183 t
ORIGIN      
        1 taatctcgca attcaacatc actaataaaa aattctccaa catattcaga gagttttttc
       61 tactgatacc aactaaattt tggttcaata ctcgaagtta aatttggttc agagaaaaaa
      121 gcctctaaat ggcaaaaggg taaggggccc taacgggcaa gggtaatccc ctaaggggga
      181 taagagtaac ctttccaagg ggaaaggtct tacccaaaag ggcaaagggc taaacggctt
      241 tctttcaacg caaacatcat ctttttcggt ctatttcaat gcactcaatt ctcaaaaaaa
      301 ttcttggcaa aagtaaatcc tcgtctcaaa gttcggttaa atctgacaat gttttcgcta
      361 ttgagcagga tagtgagggc tggttatatc cgaaaaatgc ctcccaacta cttaatacgg
      421 aattacgcca aaaatatctg ggtctacttt ggcaacaggt atcaatgaac cgtcaaatgt
      481 ttgaggcact ttatcaacag ccaatagagc gttatgctga aatggtgcaa ctgttacccg
      541 cttccgagtc acatcatcat tcacatatcg gcggaatgct cgatcacggt ttggaagtta
      601 ttgctttttc agccaaagtc cgtcaaaact atatattgcc accgaatgtc gcacctgaag
      661 aacaatctaa gcaacgaga
//
LOCUS       DANLXK010000268          653 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.272, whole genome shotgun sequence.
ACCESSION   DANLXK010000268 DANLXK010000000
VERSION     DANLXK010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.272"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            22..>653
                     /locus_tag="PXD88_002695"
     CDS             22..>653
                     /locus_tag="PXD88_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6282204.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTAWYTGIHNDRNVYKKLQELALKGNCTKKVTV"
BASE COUNT          209 a           82 c          132 g          230 t
ORIGIN      
        1 gtagctgtta tcagttcaac aattggtcgt cctgaattag aaagagctgt tttaagcgta
       61 caaaatcaga cttatccttg taaacattat gtttttgttg atggagagaa atatcaccaa
      121 caagcggctg atattttaaa gaattttcca agtgttattg ttacttatct cccaatgaat
      181 accggggctg atggttgggt aaatagcagc attaatgcaa ttgcaccatt tttagtgaaa
      241 gaagatatta tttgttatct ggatgatgat aattggtttg aacctactca cgttgaatct
      301 ggtgtgcatg ctttattaga aatgcaatct gattatgctt actctttacg taatttttat
      361 gatttagatg gcgagttttt gtgtattgat acgattgaat cgttgggaga atataattgc
      421 gtttatcaag aaccattaga atgtaattat caattaggtg gtgttaaagg tgttttatca
      481 ataaatctga atgattgtca gcatattgat acgaattgct attttattcg tagtgagata
      541 gctcgcctta tcagtacggc ttggtacaca ggtattcata atgatagaaa tgtatataaa
      601 aaattacaag aattggcact aaaaggaaat tgtacaaaga aagttacggt taa
//
LOCUS       DANLXK010000269          650 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.273, whole genome shotgun sequence.
ACCESSION   DANLXK010000269 DANLXK010000000
VERSION     DANLXK010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.273"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>650
                     /locus_tag="PXD88_002696"
     CDS             <1..>650
                     /locus_tag="PXD88_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL6282205.1"
                     /translation="ELLSLEGFKMKVVHNGLEGLNELESNQYDLVLLDVMMPVLSGVK
                     TLKRIRQKYSLPVLMLSARDDQIDRILGLELGADDYVPKPFNNRELVARMKAILRRTT
                     SRPASTDHSEQNYTENISKSLQFAGVELHSGRQQAYYQGCDLDLTGTEFALLQMLMRN
                     SGEILSRELLSLKILGKNLTPYDRAIDMHISNLRKKLPEREDGLPWFKTLRGRGYL"
BASE COUNT          224 a           95 c          130 g          201 t
ORIGIN      
        1 ctgaattact ttcattagaa ggatttaaaa tgaaagttgt gcataatggt ttagaaggct
       61 taaatgagtt agagtctaat caatatgatt tagtattact agatgtgatg atgccggtat
      121 taagtggcgt gaaaacatta aaacgtatac gacaaaaata ctcattaccc gttttaatgt
      181 taagtgcaag agatgatcaa attgatagaa tcttaggttt agaattaggg gctgacgatt
      241 atgtaccgaa accttttaat aatcgtgaac tagtcgctag aatgaaagcg atacttcgaa
      301 gaacaacctc tcgcccagct tcaacagacc attctgaaca gaattatact gaaaacatct
      361 ctaaatcatt acaatttgcc ggagttgaat tacattcagg acgtcagcag gcttattatc
      421 aaggatgtga tcttgattta acggggactg aatttgcatt attacaaatg ttaatgcgaa
      481 actcagggga gattttgtcc agagaattat tgagtttaaa aattttaggg aaaaatttaa
      541 cgccttatga tcgtgcaatt gatatgcata tttctaatct tcgtaaaaaa ttacccgaac
      601 gggaagatgg attaccttgg tttaaaacct taagaggtcg gggttactta
//
LOCUS       DANLXK010000270          644 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.274, whole genome shotgun sequence.
ACCESSION   DANLXK010000270 DANLXK010000000
VERSION     DANLXK010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.274"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>644
                     /locus_tag="PXD88_002697"
     CDS             <1..>644
                     /locus_tag="PXD88_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL6282206.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAKGFGRGLMSAGVGIAAGAAMARQPAKNQMEFDRQLAMASNTAFSDRDVKGRI
                     EGKKELLAAVQEAVKVGGGTKEDALLTLDTLIASGTMKAETAMSLLPTLQKGAVATGA
                     SSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          184 a          129 c          190 g          141 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctctcaa
       61 aatgagctac gccgtgcctc agaagccact aagcaacggg tgcgagagct gaatgcagaa
      121 ttgggtaaga caagctttgg ggataaggct aaaggatttg ggcgtggttt gatgagtgcc
      181 ggtgtcggta ttgcagcagg tgctgcaatg gctcgtcagc cagccaagaa ccaaatggag
      241 tttgaccgac agttagcgat ggcatcaaac actgcctttt ccgaccgtga tgttaaaggg
      301 cgtattgagg gcaagaaaga gttattagca gcggtgcaag aggcggttaa ggttgggggt
      361 ggaacaaaag aagatgctct tttaactctt gatacgctaa ttgcctcagg aacgatgaag
      421 gctgaaactg caatgagcct attaccaacc ttgcagaaag gtgctgtagc aacaggtgca
      481 agctccgagg atatggcaaa aattgcgatc tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg ggcgggcatt ggatatggca gttgcagccg ggcaagcagg taactttgag
      601 cttgcagata tggctcgctg gctaccacaa caaatggccg cagg
//
LOCUS       DANLXK010000271          643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.275, whole genome shotgun sequence.
ACCESSION   DANLXK010000271 DANLXK010000000
VERSION     DANLXK010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.275"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..493
                     /locus_tag="PXD88_002698"
     CDS             <1..493
                     /locus_tag="PXD88_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282207.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..>643
                     /locus_tag="PXD88_002699"
     CDS             504..>643
                     /locus_tag="PXD88_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282208.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYS"
BASE COUNT          182 a          127 c          160 g          174 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttc
//
LOCUS       DANLXK010000272          641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.276, whole genome shotgun sequence.
ACCESSION   DANLXK010000272 DANLXK010000000
VERSION     DANLXK010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.276"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(19..303)
                     /locus_tag="PXD88_002700"
     CDS             complement(19..303)
                     /locus_tag="PXD88_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282209.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
     gene            complement(321..482)
                     /locus_tag="PXD88_002701"
     CDS             complement(321..482)
                     /locus_tag="PXD88_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL6282210.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
BASE COUNT          199 a          112 c          102 g          228 t
ORIGIN      
        1 cactcctctt tcacatcact aacgtcgata aaaacctctc cttactgacc tgtgataggt
       61 gtatataaac tcatctaaat ctataggaat atctgaatta atgatttctt gtagaaagag
      121 cataaaatgc tctaactgtt ctagtctctt atctgtttcc ttttttgact caaaacgctt
      181 ttgcttaaaa cgaacttcta tcgaatctac accgatgtaa attcgatgtt cctgcatttt
      241 gagtagtcgg acagtttcaa aaaaatgttt aggggtgatg tgagaaaggg ttatatttgc
      301 catagtttag cttgaaaacg ctatttatta cttgttttag caacatacaa agaatacttt
      361 tttaaagcct ctagcattac taaattaggc tctttaggat gttctaagct ctcaagaatt
      421 agcatttgat tttcaagaga aagctttaga acaagatttg aactattctc tattttttcc
      481 attttaatta tctcattaga tgactttcgc ataacaacag gttatgtgta aattctcgtg
      541 cagtgggaca agcccgattg tactgcactc gaattgtaac ataacctgta ggacattatg
      601 cgaaaattaa taatataagt ttttcatcaa tcggcggtat t
//
LOCUS       DANLXK010000273          626 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.277, whole genome shotgun sequence.
ACCESSION   DANLXK010000273 DANLXK010000000
VERSION     DANLXK010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.277"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>626
                     /locus_tag="PXD88_002702"
     CDS             <1..>626
                     /locus_tag="PXD88_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL6282211.1"
                     /translation="PLAYEDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDDSI
                     EWHRKNEKEIPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNEIN
                     IVRNLSAHHSRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGRVA
                     ILWFLVSQTSTNYHWLDKFEDLLNDFPNLPNTKVELMGFNREILEKIK"
BASE COUNT          230 a           81 c          115 g          200 t
ORIGIN      
        1 tcctttggct tatgaagatt attctctgat taatcaaaag ttcttaaaat ttcaatggaa
       61 atctaattat gcttatgcaa attggctaga aactacagct aataaaatta agcgtagtaa
      121 agatgattct attgaatggc atagaaaaaa tgagaaggaa atcccttttt gggtaattac
      181 tgaaacctgg gattttggtg cattatctaa gttttactca ttgttaaatg ggcaacacca
      241 aaggaaaatt gctaagaaat ttaatgtaga tgagaatacg ttaaagaatt ggttgaatga
      301 aataaacatt gtaagaaacc tttctgctca ccattctcgt atttggaaca gaaaatttag
      361 cgatattgct attcctaagc tagatgatcc tcgttggtcg aaatttaaaa aaatgcagca
      421 gtatttttca aacttatcgc tggatgacaa agcaaaggag agaattttcg gaagggtagc
      481 tattctgtgg tttttagtta gtcaaaccag cactaattac cattggttag ataagtttga
      541 agatttatta aatgacttcc ctaatttacc gaatacaaaa gtagaactga tgggatttaa
      601 cagagaaata ttagagaaaa ttaaat
//
LOCUS       DANLXK010000274          593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.278, whole genome shotgun sequence.
ACCESSION   DANLXK010000274 DANLXK010000000
VERSION     DANLXK010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.278"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>593)
                     /locus_tag="PXD88_002703"
     CDS             complement(<1..>593)
                     /locus_tag="PXD88_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282212.1"
                     /translation="RILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRW
                     KRVDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKI
                     LGNKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNL
                     HIDNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQS"
BASE COUNT          193 a          150 c           89 g          161 t
ORIGIN      
        1 gattggcagt tttgtacaat cacattatca gttgggtaat tagtatccgc ctgaatactt
       61 tcacctgccc tgaccccgta gaaggtgcca ttaaacacaa cattgtcaat atggagattt
      121 ttaacaccag catcatccaa agacttaaat cgaataccaa ttgctttgtt cggtgtttca
      181 atacaaaaac ccgagataaa ataattgctg tgattaatat taaaaacttc ggcccctgct
      241 tgctggatac ctgcacctaa tactaatttg ccggtcttat tgcccaaaat tttcacatta
      301 tcgcgaacag aattaacggc attgttgata cgaaatgtac cgttttcgat aaaaaattga
      361 gaatatctca tagcatttac aaatgctgat tcatcatttg ttaccccgtc accgacggcc
      421 caaaaatcaa ataatgtaag atgtgaaagg tcaacacgct tccaccgccc cccattatta
      481 ttcacaacaa aacaaacccc accatcatca ggcgtaacta aatcctgcaa atcagccaca
      541 aactccccac cgcctgttgt gccgtcctca tagtaagcat ccaccaaaat acg
//
LOCUS       DANLXK010000275          581 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.279, whole genome shotgun sequence.
ACCESSION   DANLXK010000275 DANLXK010000000
VERSION     DANLXK010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.279"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..298
                     /locus_tag="PXD88_002704"
     CDS             <1..298
                     /locus_tag="PXD88_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL6282213.1"
                     /translation="ACLIYLRKFGYSLGRPYADTVYQSKFPNMKELRIQNKGKPIRAF
                     YAFDPLRQAIVLCAGEKGKDKRFYEKMIALADAEFTSYLNNLEKENENVRSNAQ"
     gene            270..569
                     /locus_tag="PXD88_002705"
     CDS             270..569
                     /locus_tag="PXD88_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL6282214.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          201 a          107 c          111 g          162 t
ORIGIN      
        1 ggcttgttta atctatctgc ggaaattcgg ttatagtcta ggcagacctt atgctgatac
       61 agtttatcag tctaaattcc ctaatatgaa agagttacgc attcaaaaca aaggtaagcc
      121 aattcgagca ttttatgctt ttgacccttt acgccaagcg atagtacttt gtgctggcga
      181 gaaaggtaaa gacaaaagat tctatgaaaa aatgatcgct cttgctgatg cggaatttac
      241 ctcctattta aataatttag agaaagaaaa tgaaaacgtt agatcaaatg ctcaatgaac
      301 tctctcctga acgccgccaa aaagtggaag atatggctca agaaatgatt agagagatac
      361 aactttcaaa actaagagaa gagctaaatc tctctcaaca acaattagct acagctctcg
      421 gtatttcaca gcctgctatt gctaaacttg aacagaaaga taacgatcca agattatcca
      481 cgctcaaacg ctatattgaa gcaatgggcg gtaagttaaa acttgccgtt gaattgccta
      541 caggcgatga gcgtgtaatt aggatttaat tactttgtta a
//
LOCUS       DANLXK010000276          578 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.280, whole genome shotgun sequence.
ACCESSION   DANLXK010000276 DANLXK010000000
VERSION     DANLXK010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.280"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..296
                     /locus_tag="PXD88_002706"
     CDS             <1..296
                     /locus_tag="PXD88_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282215.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     TRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
     gene            324..>578
                     /locus_tag="PXD88_002707"
     CDS             324..>578
                     /locus_tag="PXD88_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282216.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLF"
BASE COUNT          210 a           94 c          107 g          167 t
ORIGIN      
        1 cagataccag atataacaag aatgggcaag gtgctgtttc tgaaagaaat attatagatg
       61 ctaaaaatcg ttttaaagcg agccatccat acgcaaaaat tatttcttgt gttagagggt
      121 ctgagacata tgtaacacgt ccagcaaaag ctaatgctac aacaaaatct gtcaaggaaa
      181 agcaatctca accacaagaa agttcatcgc tcagttcaat gttacttggt gcggctgtaa
      241 ctgctggggt tggttttgta gccaataaat ggtttagcaa aaaagataac acttaattta
      301 tctctaacca atgtggagta aaaatggctg gattattacc accttatttc aaaaagaaaa
      361 atagtgatca ctataaagat gctgtaaaac aatttgggaa agaacaagtt gatgaggtta
      421 tagcacagtg tgatgaactt gaatcttggg taaaagaaat gccaacaaaa caacttatta
      481 tgtatgttgg ttgtttccat acttttaaca aattatctca atctaaagct tatgttcaag
      541 agaactttcc aaacgtactg gaaaacccgt ttcttttc
//
LOCUS       DANLXK010000277          565 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.281, whole genome shotgun sequence.
ACCESSION   DANLXK010000277 DANLXK010000000
VERSION     DANLXK010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.281"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            156..>565
                     /locus_tag="PXD88_002708"
     CDS             156..>565
                     /locus_tag="PXD88_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282217.1"
                     /translation="MELGKTTETDVKEMYNLEPEGVNKYSKGNQYFIDPTQLDLEDLK
                     STLIIFDEKGVLVFVGSEFNSISSIEDSKNRYKKFDYLYKILASKYKLVKKERPFVGD
                     QYAKFKDGNSEIELSEPHMGGFKINLTYAKKEFL"
BASE COUNT          221 a           75 c           94 g          175 t
ORIGIN      
        1 ctttaaaata acaaaaatag catccccgca agaatgagga gatggctatt tttgttattt
       61 atagcttata ggaaactcat tatgaaaaag atgttaaagc tacattattt gcaactatta
      121 gtacttctgt attagctgaa ccaaccgttt ttaaaatgga actaggtaaa acaacagaaa
      181 cagatgtaaa agaaatgtat aaccttgaac cggagggtgt taataaatac agcaagggta
      241 atcagtattt tattgatcca acgcaattag atttagaaga tcttaaatca acgcttatta
      301 tctttgatga aaaaggggta ttagtttttg ttggttccga gtttaattct atatcttcta
      361 tcgaggattc aaaaaaccgg tataaaaaat tcgattattt gtacaaaata ctagcaagca
      421 aatataaact tgtaaaaaaa gaacgtccat ttgtaggcga tcaatatgct aaatttaaag
      481 acggtaattc agaaatcgaa ttatcagaac cacatatggg tggttttaaa attaacttga
      541 cttatgcaaa aaaagaattc ttaga
//
LOCUS       DANLXK010000278          562 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.282, whole genome shotgun sequence.
ACCESSION   DANLXK010000278 DANLXK010000000
VERSION     DANLXK010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.282"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
BASE COUNT          184 a          116 c           77 g          185 t
ORIGIN      
        1 cttcattgat agccttccaa gaaagtaaat cttgctactc tatagcacct ttcattaaaa
       61 gtggttgttt ctcagaataa ctttcacgaa attcttgata agaaattgga aattgaattt
      121 tcattttcat ctccactagc cttgataatc tgtaccatca ccacaatcgt agtttgagcc
      181 agattggtta ttattcgttc tacctggaac tccaaacgta ggctttattg gtaaagatga
      241 tggaattaat tcttttacac cgctaggtaa agaattttca tgtattgtaa taggtaggct
      301 cctcgctaaa tcaagggcta aattaacaga agtactggat aaaccgccta aagcccccct
      361 cttgcaaacc ctgtagcaaa agcaacgcca taagatacaa gatctggttg attagcctta
      421 ttttcagaat tccctccaac tactaagctt aattgtaaaa ttgatggttc tttcatttca
      481 ttctcccttt aatctaattc tgatcacaaa aaccaatatt aaaaataatt ctaaaaataa
      541 tactatactt acaacatctt cc
//
LOCUS       DANLXK010000279          548 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.283, whole genome shotgun sequence.
ACCESSION   DANLXK010000279 DANLXK010000000
VERSION     DANLXK010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.283"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>548
                     /locus_tag="PXD88_002709"
     CDS             <1..>548
                     /locus_tag="PXD88_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282218.1"
                     /translation="LIKKSVKDCSRDREKISHCTLLNACSKALGFSGGFAGFQEDYLS
                     NLTQFMEKHGLLYLVDLTKQKYPVNDMCMTRSLALKKQDISERIFFSGKEIPKRIFTG
                     FNFRYDMHLANGFRIGNSLKTPYSDIGICEDINEALKNPSIKIDCRDGTIRSMADVVI
                     GRYLDKVLFYYFNLIGDQLVQP"
BASE COUNT          197 a           72 c           99 g          180 t
ORIGIN      
        1 attaattaaa aaatctgtta aagattgttc tagagataga gaaaaaattt ctcactgtac
       61 tttgttaaat gcttgctcaa aagctttagg attttctgga ggctttgcag ggtttcaaga
      121 agattattta tctaatttga cgcaattcat ggaaaaacat gggctcttat atcttgtaga
      181 tttaacaaaa caaaaatatc cagtaaatga tatgtgcatg acaaggagct tagctctgaa
      241 aaagcaagat atatctgaaa gaattttctt tagcggaaag gaaatcccta agagaatatt
      301 tactggattt aatttccgat atgatatgca tttagctaat ggttttcgta tcggaaattc
      361 cttaaaaacc ccatattctg acataggtat atgtgaagac ataaatgaag cattaaaaaa
      421 tccatcaata aaaattgatt gccgtgatgg cacaatcaga agtatggcag atgtagtcat
      481 aggtagatat cttgataaag tattgtttta ttattttaac ttgataggtg atcagttagt
      541 ccagccta
//
LOCUS       DANLXK010000280          521 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.284, whole genome shotgun sequence.
ACCESSION   DANLXK010000280 DANLXK010000000
VERSION     DANLXK010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.284"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>521
                     /locus_tag="PXD88_002710"
     CDS             <1..>521
                     /locus_tag="PXD88_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL6282219.1"
                     /translation="MPRGDKNAMKGFIFNIPSIEYQKKCIANYFAFDQKIQLNTQTNQ
                     TLEAIAQAIFKSWFVDFDPVRAKAAALSEGKSEHEANLAAMSVICGKDTSELNDTEYK
                     ALWQIAEAFPSEFGDEGLPIGWKFNQADNLFDVGIGKTPPRKESEWFSDNANDTEWIS
                     IKDMGNQGLFITE"
BASE COUNT          182 a          103 c          111 g          125 t
ORIGIN      
        1 atgccacgag gggataaaaa tgcaatgaaa ggttttattt tcaatatccc aagtattgaa
       61 tatcaaaaaa aatgtattgc taattatttt gcctttgacc aaaaaatcca actcaacacc
      121 caaaccaacc aaaccctaga agccattgca caggcaatct tcaaaagctg gtttgtggat
      181 tttgaccctg tgcgcgccaa agccgccgcc ctaagcgaag gcaaaagcga acacgaagcc
      241 aaccttgcgg caatgtcggt gatttgtggt aaagacacca gcgagttaaa cgacaccgaa
      301 tacaaagcgc tttggcaaat cgccgaagcc ttcccaagtg agtttggaga tgaagggtta
      361 cctattggct ggaaattcaa tcaagcagac aatttatttg atgttggtat tgggaaaacc
      421 ccaccaagaa aagagagtga atggttttct gataatgcaa atgatacaga atggatttct
      481 attaaagata tgggaaatca gggattattt atcacagaaa g
//
LOCUS       DANLXK010000281          507 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.285, whole genome shotgun sequence.
ACCESSION   DANLXK010000281 DANLXK010000000
VERSION     DANLXK010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.285"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
BASE COUNT          180 a           94 c           81 g          152 t
ORIGIN      
        1 tactctttta gtacatcaac taattcatca ggtaaatttt ctaacttcca tcttcgtttt
       61 tctaaaatcg aaaagtaata ctggtcatcg tctaaaatct caatatatgt acttccaaag
      121 agaacttttg tataaggcgt atcatgatag atcgtgacat cagccttcaa tttgtactcg
      181 ccttccatgc attccccaaa atggtattga ctaaaaacaa tggttatgat ataatgacat
      241 ggggcttgaa aagcaagctg attgctcaat aggtaatcag accactttga aagctcggtc
      301 cttttcaaaa gaaaaggtct tactaattac tcacaaaatc tggagaacaa tatgaaaaac
      361 actacagcgc aacaaaagcc aatgaaagtt acagctaaac atattagaga atctactact
      421 cgttgttaag agcttagctt tgatataaaa agaccaactt tttatatcgg cgtagtaggt
      481 ctaatttgag cctacgaaat gaaagtg
//
LOCUS       DANLXK010000282          491 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.286, whole genome shotgun sequence.
ACCESSION   DANLXK010000282 DANLXK010000000
VERSION     DANLXK010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.286"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            299..>491
                     /locus_tag="PXD88_002711"
     CDS             299..>491
                     /locus_tag="PXD88_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL6282220.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVFNMDICELLSY"
BASE COUNT          193 a           87 c           67 g          144 t
ORIGIN      
        1 agtccacgaa caatacctaa cgggaaaata attatatcca taagagataa catattctcc
       61 ccaaattgat agtctttata tgctgcataa agaggcaaaa ttactgatgc agctgacgct
      121 aaaataccta gcattccata taatggatta tattgattat tcatgaatgt ttcttctcct
      181 gtgagcttaa gataaaattt actctattct aaattgctca ataaactgct acaatccaca
      241 aaatttatcc tttaccacat caagttatat cccaactccc acaatctata ggtgttatat
      301 gaaagtacac gaaaaaatca aattactgcg agaaaataat cattggacac aagatgaaat
      361 ggctcaaaaa ttaagtatga caaccaaagg ttatgcaaaa atagaacgtg gtgaaactat
      421 ctctaattta ccgaaaatag aacaaatcgc agaagtattt aatatggata tttgcgaatt
      481 attatcctat g
//
LOCUS       DANLXK010000283          474 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.287, whole genome shotgun sequence.
ACCESSION   DANLXK010000283 DANLXK010000000
VERSION     DANLXK010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.287"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>474
                     /locus_tag="PXD88_002712"
     CDS             <1..>474
                     /locus_tag="PXD88_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282221.1"
                     /translation="NSSLFQFICFIRKYPKALPFGIMMIFIIPPMIMLIKSYIEVNHI
                     LKNIENDKINFNHQQNKYDSIINKAKNQNSQENNLTEINSNIQILAEKHQLTIESLQW
                     NLEQGKSIELSIIGNSRSLFDFIHSVKQIPYLKYNAISLIKSRQDRKVEMNTTLVI"
BASE COUNT          196 a           75 c           58 g          145 t
ORIGIN      
        1 aacagttcat tatttcagtt tatttgcttt atccgaaaat atcctaaagc attaccattt
       61 ggcattatga tgatattcat cattccacct atgattatgt tgataaaatc ctatattgag
      121 gttaatcata ttttaaaaaa tatagaaaat gacaagatta actttaatca tcaacaaaac
      181 aaatatgact caattatcaa taaagctaaa aatcagaaca gccaagagaa taatttaacc
      241 gaaataaaca gcaacataca aatattagct gaaaaacacc aactaaccat tgaaagttta
      301 caatggaatt tagaacaagg taaaagtatt gaattgagta ttatcggcaa tagccgatct
      361 ttatttgatt ttatccattc agttaagcaa ataccttatt tgaaatacaa tgcgattagc
      421 ctcatcaaat ctcggcaaga cagaaaagtt gaaatgaata ctaccttagt cata
//
LOCUS       DANLXK010000284          458 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.288, whole genome shotgun sequence.
ACCESSION   DANLXK010000284 DANLXK010000000
VERSION     DANLXK010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.288"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..425)
                     /locus_tag="PXD88_002713"
     CDS             complement(<1..425)
                     /locus_tag="PXD88_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL6282222.1"
                     /translation="MALAADLGYQTQVETLIKSLCYHHSHLKIYLFQKTFPNEWFDIW
                     CQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIPYLDEERVLYLDSDIVVDD
                     NLSEMYWLNFNGIPLYAVEDYVHNHIPAYLDLDLSPYFNS"
BASE COUNT          172 a           69 c           72 g          145 t
ORIGIN      
        1 gaattaaaat aagggctgag gtctaaatca agataagccg gtatatgatt atgaacataa
       61 tcctctactg catataaagg tataccatta aaattaagcc agtacatttc tgataaatta
      121 tcatcaacca caatatctga atctaaatat agtacacgtt cttcgtccag atatggaata
      181 aggtaacgat aaaaacccgt ttcattaata tgctctaaac tcttatattt tgaaaaatct
      241 acacagactt tcacaggaat aatttcactc gataataagg ctaatttttg gcaccagata
      301 tcaaaccatt cattaggaaa agttttctga aatagataaa tcttaagatg agaatgatga
      361 taacaaagcg atttaattaa ggtttcaact tgagtttgat agcctaaatc agctgctaat
      421 gcaataacta ttggttggtt ggttgattga ttgattga
//
LOCUS       DANLXK010000285          457 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.289, whole genome shotgun sequence.
ACCESSION   DANLXK010000285 DANLXK010000000
VERSION     DANLXK010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.289"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>457)
                     /locus_tag="PXD88_002714"
     CDS             complement(<1..>457)
                     /locus_tag="PXD88_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL6282223.1"
                     /translation="DNRVVLHFNERNKGLIYSLNKAINLSSGEYIARMDADDISLPTR
                     LSEQILYLEENHLDLCGCNALLFSEHGNLGLTNKLNSHEALEKLMVAGDIGIIHPTFL
                     ARRKVFVESGGYNPLALHAEDMEFIAHILSMGFRLGNNPKVLFKYRFST"
BASE COUNT          162 a           90 c           54 g          151 t
ORIGIN      
        1 tttgtagaaa acctatattt gaataatacc ttaggattat tccctaatct aaatcccatt
       61 gataaaatat gggcaataaa ttccatatct tccgcatgta aagctaaggg attataccct
      121 ccagattcaa caaatacttt tctccttgct aaaaaagtag ggtgaattat tccaatatca
      181 ccagccacca taagcttttc taaagcctca tgactattca acttatttgt aagaccaagg
      241 ttgccatgtt cagaaaaaag caaagcatta caaccgcata agtctaaatg gttttcttct
      301 aaatataaaa tttgctctga caatctagta ggtaaagata tatcatcagc atccattctc
      361 gctatatatt caccagagga taagtttata gctttattta atgaatatat caacccctta
      421 tttctttcat taaaatgtaa aacaactcta ttatctc
//
LOCUS       DANLXK010000286          455 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.290, whole genome shotgun sequence.
ACCESSION   DANLXK010000286 DANLXK010000000
VERSION     DANLXK010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.290"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>455)
                     /locus_tag="PXD88_002715"
     CDS             complement(<1..>455)
                     /locus_tag="PXD88_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL6282224.1"
                     /translation="KFNKVFLANINELEIQFLLSAISFQELNTFDDGTANIVQNSIFY
                     QAENIGLNRKLINFFLGNKYSLEKLKQRSKTHYTIYKNFPNIIENTVYIDLINQVESV
                     GTAPSNDDITHILLGQPIFERDDEKNIALAEKVIQQFGIDLYLPHPREK"
BASE COUNT          150 a           67 c           66 g          172 t
ORIGIN      
        1 atttttctct tggatgcggt aaatatagat caatgccaaa ttgttggata actttttccg
       61 ccaatgctat atttttttca tcatctcgtt caaaaatagg ctgtcctaat aaaatatggg
      121 taatatcatc gttagatggt gctgtaccca ctgattcaac ctgattaatg agatcaatat
      181 aaaccgtatt ttcaataata ttcggaaaat ttttgtaaat tgtataatga gttttagagc
      241 gttgtttcag cttttctagg ctatatttat tacctaaaaa aaagttaatc aattttcgat
      301 ttaacccaat attttcagct tgatagaaaa tactgttttg tacaatatta gctgtgccat
      361 catcaaaggt attgagttct tgaaatgaaa tggcacttaa cagaaattga atttctaact
      421 cattgatatt tgctaaaaag actttattaa acttc
//
LOCUS       DANLXK010000287          431 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.291, whole genome shotgun sequence.
ACCESSION   DANLXK010000287 DANLXK010000000
VERSION     DANLXK010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.291"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>431
                     /locus_tag="PXD88_002716"
     CDS             <1..>431
                     /locus_tag="PXD88_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL6282225.1"
                     /translation="IFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQ
                     ALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLY
                     TMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          126 a           78 c          105 g          122 t
ORIGIN      
        1 atttttattt cagcaggtgg tgtgcgttct atttggctac gccataatct cgctaacttt
       61 aaacagcgtt taaatgcgtt agaaaaagca gtggctgaga aaggcattat tctgagtgaa
      121 aaccaagttc aagccttgga gcgtaaaaaa gaagacgatg tggcttgtgg cgaaattgaa
      181 acggctcatc cgggctatct aggttcacaa gataccttct atgtggggaa tcttaagggg
      241 gttggacgca tttatcaaca gacctttatt gatacttata gtaaagtcgc atttgcaaaa
      301 ctgtatacga tgaagacagc aattagtgca gcagatatgc tcaatgataa agtcctaccg
      361 ttctttgagt cccaaggatt accgatgttg cgtattctta ccgaccgagg cagtgagtac
      421 tgtggcaagg t
//
LOCUS       DANLXK010000288          428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.292, whole genome shotgun sequence.
ACCESSION   DANLXK010000288 DANLXK010000000
VERSION     DANLXK010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.292"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>428
                     /locus_tag="PXD88_002717"
     CDS             <1..>428
                     /locus_tag="PXD88_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDL6282226.1"
                     /translation="FVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQA
                     LERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYT
                     MKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          133 a           74 c          100 g          121 t
ORIGIN      
        1 tttgtttcag caggaggtgt acgttcgatt tggttacgtc atcatcttgc caattttaag
       61 caaagattaa tcgccctgga aaaactggtt gcagaacaag gtattatact cagtgaaaca
      121 caggtacaag ccttagagcg taagaaagaa gatgagattg cctgtggtga aattgaaacg
      181 gtacaccctg gctatcttgg ctcacaagat actttctatg tgggcaacct caaaggagtg
      241 ggtcgtattt atcaacaaac gtttattgat acttacagta aagtggcgtt tgcaaaactt
      301 tatacaatga agaccgctat cagtgctgcg gatatgctga atgataaagt gttaccatac
      361 tttgaaagcc aaggtttacc gatgttacgc atattaactg accgaggaag tgaatattgt
      421 ggcaaggt
//
LOCUS       DANLXK010000289          425 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.293, whole genome shotgun sequence.
ACCESSION   DANLXK010000289 DANLXK010000000
VERSION     DANLXK010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.293"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            1..306
                     /locus_tag="PXD88_002718"
                     /pseudo
     CDS             1..306
                     /locus_tag="PXD88_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253284.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
BASE COUNT          140 a           80 c           95 g          110 t
ORIGIN      
        1 ccaatgcttg aggaggctag tgataatgtt acagatatca ctcagcctag cccttggcaa
       61 aatgccggtg taaccgctat ccacggtggc tcaatagtta ctaataccgt tactgctcaa
      121 caaattgcag caaataccat taccgccaac gaaatcgcag ccggcacgat tgcagctcga
      181 aatatggcag caaactcgat taatgcaagt catattgtag ggagttcgat cactgcggat
      241 aagctaaatg taaacaattt agcggcaata tcagcgaatc tcggagctat tacagctggt
      301 tctattaata tcaataatag attcaaggta agtaatgctg gagtagtcga aatgcgagcc
      361 aatagtggaa atgttggtat ggtaatgaat aacaatagta ttattgttta tgatgaacaa
      421 ggtag
//
LOCUS       DANLXK010000290          411 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.294, whole genome shotgun sequence.
ACCESSION   DANLXK010000290 DANLXK010000000
VERSION     DANLXK010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.294"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>411
                     /locus_tag="PXD88_002719"
     CDS             <1..>411
                     /locus_tag="PXD88_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282227.1"
                     /translation="IASDWEIIEAAQNKVKAELIRKSEKKAELCLNVAQAVLITNQKV
                     QKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIESDYIYQRATKDFYFNY
                     NGKKSAYYDPQSDLARLQEVSDSMFNAMQNRYCK"
BASE COUNT          152 a           56 c           81 g          122 t
ORIGIN      
        1 tattgcatcg gattgggaaa taatagaagc ggctcaaaat aaggtgaaag cagagcttat
       61 aagaaaatca gaaaaaaaag cagagttatg tttaaatgtt gctcaggctg tcttaattac
      121 taatcaaaaa gtacaaaaag atactttctc aatgtgtggt gaattttcga cagagattgt
      181 cttttctgac tctaaagcat atagccttgc agtatgtgga aaggttaaag gtaaagatat
      241 tatcggaaat ccgatagaga gcgactatat ataccaaaga gcaactaagg atttttactt
      301 taattataat ggcaaaaaat cagcttatta tgatcctcaa tctgatcttg caaggcttca
      361 agaggtctca gactctatgt ttaatgctat gcaaaataga tattgtaagt g
//
LOCUS       DANLXK010000291          408 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.295, whole genome shotgun sequence.
ACCESSION   DANLXK010000291 DANLXK010000000
VERSION     DANLXK010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.295"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..363
                     /locus_tag="PXD88_002720"
     CDS             <1..363
                     /locus_tag="PXD88_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282228.1"
                     /translation="AQQRVQKYVEKVNQKNPQALKDLDNISNLKKINENLKKAAKFTG
                     IISSIKDYYDLAEGFRNGIKSNDWEPFLKTSAQIGASALMSMLVASMITGPTTIGSII
                     ISAAFISIGGYIISLASR"
BASE COUNT          147 a           65 c           74 g          122 t
ORIGIN      
        1 gcacagcaga gggtgcaaaa atatgtcgaa aaagtcaacc aaaagaatcc tcaggcacta
       61 aaagatctcg ataacatatc caacttaaaa aaaattaatg agaatttaaa aaaagcagca
      121 aaatttactg gtattattag cagtattaag gattattacg atctagcaga agggtttaga
      181 aatggcataa agtctaatga ttgggaacct tttttaaaga catctgctca gataggtgct
      241 tcagctttaa tgagtatgtt agtagcctca atgataacag gcccaacgac aattgggagt
      301 attattatta gtgctgcatt tatttctata gggggatata ttatttcact agcttcccgt
      361 tagatagtct ttgttatact caataaccta ctatactacc tataggct
//
LOCUS       DANLXK010000292          391 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.296, whole genome shotgun sequence.
ACCESSION   DANLXK010000292 DANLXK010000000
VERSION     DANLXK010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.296"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            20..367
                     /locus_tag="PXD88_002721"
     CDS             20..367
                     /locus_tag="PXD88_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282229.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
BASE COUNT          125 a           67 c           68 g          131 t
ORIGIN      
        1 agtgtaaaat tggtattata tgttcagaga agaagctatt gaatatcaat cgaaaaaatg
       61 gaaaagcaca gctgtactat ttagcagagt tccagctttg gttgtctttt ccatttcttt
      121 ctttatcttt actgccttta ttctatttat tgtgtttggt aattataccc gccgtgaaac
      181 ggttgtgggt gaattagtga tgcaatctca tccgatttta ttatctgccc caaaatccgg
      241 ctatatatcc gaaaattata ttcaaccaca tcagcaggta aaaaaaaggg cgatccgctg
      301 gttaaaatta cgctggatag aattacgcat agcgaaaata ttaatgttaa ttctattctt
      361 tcgttgaaat cacaaattca agcaacagaa c
//
LOCUS       DANLXK010000293          377 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.297, whole genome shotgun sequence.
ACCESSION   DANLXK010000293 DANLXK010000000
VERSION     DANLXK010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.297"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            53..>377
                     /locus_tag="PXD88_002722"
     CDS             53..>377
                     /locus_tag="PXD88_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL6282230.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPE"
BASE COUNT          126 a           54 c           75 g          122 t
ORIGIN      
        1 atttaaggct ataataatga gtaggaattt tagatttaag gacacaaaaa taatgagcta
       61 taaagtggtc ttttcgctgt tgttttctct atttttatca acagcaaatg caaattggac
      121 aaaaattaat gatgtgaatt atacgtgggg gccatttaat atttaccata ttacgctttt
      181 tactgagagc ggtacttatg tagaaggtac acgtccttta atgcttactc tacaatataa
      241 aaaaccgtgg gaggggcgtg attttgcggt ttctttagca agaacttgga ataatttagg
      301 cattaagcta cctgaaaaag agttagatga ggttattacc cacctgagaa aaactttccc
      361 agatattaag cctgaag
//
LOCUS       DANLXK010000294          375 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.298, whole genome shotgun sequence.
ACCESSION   DANLXK010000294 DANLXK010000000
VERSION     DANLXK010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.298"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(11..250)
                     /locus_tag="PXD88_002723"
                     /pseudo
     CDS             complement(11..250)
                     /locus_tag="PXD88_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608580.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
BASE COUNT          117 a           74 c           48 g          136 t
ORIGIN      
        1 ccatgtatct ctatagctcc atatcgttac tcatactatg actctgctca attgttttat
       61 ctattttcct tttatgtttc ttaattgctc caataactga ttcctttttc tctgttttat
      121 ccctaccaag atataaatgt gcatagttta aggttattga gatactttca tgacctaatc
      181 tttctgcaat taccacagga gaaaatcctt gctctatcaa ataagcaaca tgagaatgtc
      241 ttaaatcatg tgtagaagat cagacttgat ctgacaattc actctaaaaa gtgagagttt
      301 cccgtttaga atatgagtgt caaaaatcaa tctaaacaaa aaggaaactc tcatgtttta
      361 ttctagcaat ccact
//
LOCUS       DANLXK010000295          366 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.299, whole genome shotgun sequence.
ACCESSION   DANLXK010000295 DANLXK010000000
VERSION     DANLXK010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.299"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>366
                     /locus_tag="PXD88_002724"
     CDS             <1..>366
                     /locus_tag="PXD88_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDL6282231.1"
                     /translation="RQYCDAYHLLENVARWEKPKVYGVARKMDRTSLKSDYCMIAATK
                     AFEELIENADAKYILLSYNNMSDKGNDRSNAKISDEDIMKILSKKGKVIVFESDYKSF
                     STGKSDIQDNKERLFLCEV"
BASE COUNT          145 a           37 c           74 g          110 t
ORIGIN      
        1 caagacaata ttgtgatgca tatcatttac ttgaaaatgt ggcacgatgg gaaaaaccta
       61 aagtttatgg tgttgcaaga aagatggata gaacttcgct taaaagtgat tattgtatga
      121 ttgcagctac aaaagcattt gaggagctta ttgaaaatgc tgatgcaaaa tatattttgc
      181 tttcatataa caatatgtca gacaagggaa atgatagatc caatgcgaaa atatcggatg
      241 aagatattat gaaaattctt agcaaaaagg gaaaagtaat tgtatttgaa tcggattata
      301 agagtttttc aactgggaaa tcagatatac aagataataa agaaagatta tttttatgcg
      361 aagtat
//
LOCUS       DANLXK010000296          359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.300, whole genome shotgun sequence.
ACCESSION   DANLXK010000296 DANLXK010000000
VERSION     DANLXK010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.300"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>359
                     /locus_tag="PXD88_002725"
     CDS             <1..>359
                     /locus_tag="PXD88_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282232.1"
                     /translation="SELSLFNGKVLVLTGQAGSGKSHLLGDFVQKRQNSGKYSLLLLG
                     QDFTEKSNAWNQILSKQLNLNITPEVFLSALDSIGEMQKERVILAIDALNEGEGKSLW
                     NNQLNGLIELVSQYPNI"
BASE COUNT          126 a           47 c           69 g          117 t
ORIGIN      
        1 atctgaatta tcattattta atggtaaagt gcttgtttta actggtcaag ctggtagtgg
       61 aaaatctcat ttattgggtg attttgtcca aaaaagacaa aattctggaa agtattcttt
      121 gttgttattg gggcaggatt ttacagaaaa atccaatgct tggaatcaaa tcttatccaa
      181 acaattaaat cttaatatca cacccgaagt atttttatcc gcattagata gtatcggaga
      241 aatgcaaaaa gaacgggtta ttttagccat agacgcctta aatgagggtg aagggaaatc
      301 attatggaat aaccaactta atggattaat tgagttggta agtcaatatc caaatattg
//
LOCUS       DANLXK010000297          359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.301, whole genome shotgun sequence.
ACCESSION   DANLXK010000297 DANLXK010000000
VERSION     DANLXK010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.301"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            complement(<1..>359)
                     /locus_tag="PXD88_002726"
     CDS             complement(<1..>359)
                     /locus_tag="PXD88_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS1595-like element ISMha2 family transposase"
                     /protein_id="HDL6282233.1"
                     /translation="HKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSPH
                     LEMFEGEIEADESYFGGARKGKRGCGAAGKTAVFGLLKRDDKVYTVVVPNTQSATLLP
                     IIREKVKPDSLVYADFY"
BASE COUNT           99 a           88 c           76 g           96 t
ORIGIN      
        1 gataaaaatc ggcgtaaaca aggctgtctg gcttcacttt ctcccgaata atcggcaaaa
       61 gtgtggcaga ttgcgtattt ggtacgacaa cggtataaac cttgtcatca cgttttaaca
      121 gcccaaatac ggcagttttg cctgcggcac cacaccctcg tttacctttg cgagcaccac
      181 cgaaataact ttcgtccgct tcaatttcac cctcaaacat ttccagatga gggctatgtt
      241 gatagatgag caatcgcaaa cggtgaaagt aataggcagc ggtggttttg tttacattca
      301 ccaactcagc cgctgttcga gcagtgacac ctgctacaaa cagttcaatg agtttatgt
//
LOCUS       DANLXK010000298          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.302, whole genome shotgun sequence.
ACCESSION   DANLXK010000298 DANLXK010000000
VERSION     DANLXK010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.302"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..>338
                     /locus_tag="PXD88_002727"
     CDS             <1..>338
                     /locus_tag="PXD88_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL6282234.1"
                     /translation="AVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRL
                     GMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQ
                     RLATIPVIAS"
BASE COUNT          104 a           79 c           76 g           79 t
ORIGIN      
        1 ctgccgttga ttcactttct atcggtgcaa ggaacttact gatagacagt acttacaacc
       61 aacacatcaa ctacaataca aaaatgtcat caatcacacg cacagtctat cgcggcaata
      121 tgttgatacg actcggaatg cttggtggcg caggtgtggc cggtattgta caagcaccag
      181 ccgctcaagt aagtaatatc agacagggtc aagagtacac acttagcctg aatgtacagg
      241 gtacagccgg catacaaaaa acggggctca actatgtatt cttgatgcgt gctgatgggg
      301 ctaatcaacg gttagcaaca atacctgtta tagccagc
//
LOCUS       DANLXK010000299          327 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.denovo.303, whole genome shotgun sequence.
ACCESSION   DANLXK010000299 DANLXK010000000
VERSION     DANLXK010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.denovo.303"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
BASE COUNT          103 a           57 c           50 g          117 t
ORIGIN      
        1 actacctctt gcgttgtaga aagctcggtg gataataaat aagtgtgtta gatattactg
       61 gcacactatc tatttttgcc cttcttaacg tggataatac ggtttttatt gctaactcaa
      121 aatcattaac aagaatactc tctttgtact cattcccact ttgtcgtaca aaatcaatct
      181 ggtatgagcc tattttatct aagctgcaca tttcttgaat ctgctctaaa tatatcactg
      241 aatggttgtt tggatctctt aatcttgatt cttgaaaaag gaataaacct attacaattg
      301 ctgaaaaaag aataattagt aagacgt
//
LOCUS       DANLXK010000300        12073 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.guided.078, whole genome shotgun sequence.
ACCESSION   DANLXK010000300 DANLXK010000000
VERSION     DANLXK010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12073
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.guided.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            47..1249
                     /gene="tet(H)"
                     /locus_tag="PXD88_002728"
     CDS             47..1249
                     /gene="tet(H)"
                     /locus_tag="PXD88_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline efflux MFS transporter Tet(H)"
                     /protein_id="HDL6282235.1"
                     /translation="MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYG
                     VLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAALDYLLMAFSTTLWMLYIGRI
                     IAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISAHMP
                     FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATY
                     FIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVLNIFFQAIVAGKLAQKWGEK
                     TTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQGYLSKSVDDNAQGK
                     LQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTT
                     PKAVISTP"
     gene            complement(1345..2655)
                     /locus_tag="PXD88_002729"
     CDS             complement(1345..2655)
                     /locus_tag="PXD88_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDL6282236.1"
                     /translation="MSNILNWPDYKVLQVSELEHDYQVHAEVSEPPTQCPHCNHPEIV
                     GFGRRDEVIMDTPVHGRRTGIMLNRRRYRCQSCRKTFLEPVPHKDEKRQMTNRLIQYI
                     ERESLRRTFSSVAEDVGVDEKTVRNIFNDYCERLEKTLNFEMPQWLGIDEIHIIKPRC
                     VITNIQQQTIVDMLDNRNKTTVTRYLSKRTDRDLVRYVAMDMWRPYRQAVETMIPDAT
                     VIIDKFHVVRMANESLERARKAIRSALTPQQRRGLMRDRFVLLKRRHELTDAEYMRFS
                     GWTLNYPEIGQAYELKEAFFEIWDCQTRHQAQEAYYSWLRQITPEMKAHYDPLIKAMG
                     NWHDDIFAYFDHPITNAYTESLNNLIRVVNRVGRGYSFEALRAKILFTEGFQKIKKPR
                     YQRQRIPEGAMGRMPFYGVAEAGPSTNYGADISTLVREIEAGRL"
     gene            complement(2655..2957)
                     /locus_tag="PXD88_002730"
     CDS             complement(2655..2957)
                     /locus_tag="PXD88_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282237.1"
                     /translation="MKIKLYFPDESIATIKRMGLRQMSPETLRWTADHPSSSYGMGAL
                     LRGKSGEILDGKSFAAMVHAFGAWIETDSEDTSRRVHNALVTAATGTEESVKVAKE"
     gene            complement(2998..3186)
                     /locus_tag="PXD88_002731"
     CDS             complement(2998..3186)
                     /locus_tag="PXD88_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282238.1"
                     /translation="MSYDANDALNEIEEALSELERVAEDLINNNPNKESELRGQGVHQ
                     ATKHLRFRIRNIRRGEAI"
     gene            complement(3493..3945)
                     /gene="ssb"
                     /locus_tag="PXD88_002732"
     CDS             complement(3493..3945)
                     /gene="ssb"
                     /locus_tag="PXD88_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL6282239.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEGKLRTRKWQDQNGQERYTTEIQG
                     ELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF"
     gene            complement(4301..4786)
                     /locus_tag="PXD88_002733"
     CDS             complement(4301..4786)
                     /locus_tag="PXD88_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL6282240.1"
                     /translation="MNLISDEIYRQLVKDSGLNTSLKQLFSHFDTGSDYELLQEQFTQ
                     ARAYFMAAQDSMVQSVRQDLSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDKSVPVEVRKKVVAVEKDRILINMQISVFNHILRQLADCAEKLKEVDNAVAKSDLN
                     S"
     gene            complement(4795..5553)
                     /locus_tag="PXD88_002734"
     CDS             complement(4795..5553)
                     /locus_tag="PXD88_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL6282241.1"
                     /translation="MTTQLDPQLGPLRSEITFTLHTQYAHKLWVGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKSSGITRRDYQEKNARYQAAIKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNTTVEEEQSVETHITAQTNESQK"
     gene            complement(5732..6922)
                     /locus_tag="PXD88_002735"
     CDS             complement(5732..6922)
                     /locus_tag="PXD88_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL6282242.1"
                     /translation="MFSSTNKPTEHGLLFFGNQHETVPTRLLQDPCLTPRAKFAWQLI
                     KCNVQAFQGGLFPSYETLSKMLSDRPYAEAKLSEKVVTQTLYLLRLTRWLTLCETVRD
                     ERGYVQGNVYILHDEPVPILDAIQLNSDYLSFLDKCTKHKDSLINGVANHIVESLITD
                     KTKWHYVSHLDCLQSRYQIYQQQQLVKDKQPSQTEQELSKIQQNILTSTMEVRDFDEE
                     VRKKSSKNQTSNKGVRAKNEDKSLILDLLPLGKSDVQYRTLYINKYCTGEPSEITWPQ
                     EIPLTSLEQKLTAQAMKGLDLGLCQAILLEVQQRIIQKQDVKKPKGYLYTLIQRAKQG
                     EFKPYYFELGKNLPSQNQANNNSAHSIQKLTEQPTEKPVLTSADREQMASRMQKFRAE
                     LLLQ"
     gene            complement(7081..7638)
                     /locus_tag="PXD88_002736"
     CDS             complement(7081..7638)
                     /locus_tag="PXD88_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL6282243.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMEILDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            complement(7631..9277)
                     /locus_tag="PXD88_002737"
     CDS             complement(7631..9277)
                     /locus_tag="PXD88_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL6282244.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPTHYSSDVEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLGKSLSSRELSSELENDGYIISHALILKMERCVNYLYPHIPEVLF
                     SGLGHTQIDKLLAIRNNAEEVWAAHQFDTDVTFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALEGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQT
                     AKSEPLIKNENKAVTPQKAQHIIDEVIDDNESDDEQNNAITDLSQLGSSLLDNQDNQE
                     DYLSQIAHNFGLTPGMSIQEQREQRAEANGLTFACEGRQPVEDIWLIHPARQYRSEAY
                     SLALDIAESMGIDHLVEHIVKQPVDYTYAMKPADTELSPSALTLYSFLSMLQTAEHKD
                     ENSCVLDSKFLFELDDLTLVKIFRLIRVSRHIRQQGGEND"
     gene            complement(9286..10647)
                     /gene="dnaB"
                     /locus_tag="PXD88_002738"
     CDS             complement(9286..10647)
                     /gene="dnaB"
                     /locus_tag="PXD88_002738"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL6282245.1"
                     /translation="MSSLNKSLVQPHSIEAEFSVIGGLLLDNELFDEVSSKINEGDFY
                     NFTHRLLFKHISELIEAGKPADILTLDQYLTQKKVIEDLGGFAYLAEIVKNTPSTANI
                     HAYTDIVLLYSKQRQLLKLGQFIVDQTQSAKTPDKFEAVVDDIEKKITEFSLSDNTKS
                     AADLSDIFANMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLKKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADSLDDEE
                     WSKLTSAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPAAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSVEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEVYDADSPFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRTN
                     TTH"
     gene            complement(10659..11483)
                     /locus_tag="PXD88_002739"
     CDS             complement(10659..11483)
                     /locus_tag="PXD88_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL6282246.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTTIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETISQLCALLMPQFANSHFSA"
     gene            complement(11581..11666)
                     /locus_tag="PXD88_002740"
     tRNA            complement(11581..11666)
                     /locus_tag="PXD88_002740"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11630..11632),aa:Leu,seq:caa)
BASE COUNT         3235 a         2535 c         2468 g         3835 t
ORIGIN      
        1 agatatatta cacccactct atcactgata gatttttagg atctcaatga ataaatcaat
       61 tattattata ctgctgatca ccgtattaga tgccattggt atcgggctta tcatgccagt
      121 actccctact ctattaaatg aatttgtcag tgaaaattca ctggcaaccc attacggtgt
      181 gctattagcg ctctatgcta ccatgcaggt tatttttgct cctattctag gacgactgtc
      241 tgataaatac ggcagaaaac ccatcttgct gttttccctt ttaggcgcgg cactcgacta
      301 tcttttaatg gcattctcaa ccacactttg gatgctctat attgggcgca tcattgcggg
      361 gatcacaggc gcaacaggtg ccgtatgtgc atcagcgatg agtgatgtga ctcccgctaa
      421 aaatcgaact cgctattttg gtttcttagg tggtgctttt ggtgttggcc ttattatcgg
      481 cccaatgcta gggggattat taggtgatat cagtgctcat atgccattta tttttgccgc
      541 tatttcacac tcgatattat taatactctc tttgctcttt ttccgagaaa cacaaaaaag
      601 agaagcgctt gttgccaata ggacacctga aaaccaaact gcctcaaata cagtcactgt
      661 tttttttaag aaaagcctct acttttggtt agcaacctat tttattatcc agcttatcgg
      721 gcaaattcct gccaccatct gggtgctgtt tacacaatat cgttttgatt ggaacacaac
      781 ttctatcggt atgtctttgg cggttctggg tgtattaaat attttctttc aggcgattgt
      841 cgctgggaaa ttggcacaaa aatggggcga aaaaaccacc attatgatca gtatgtctat
      901 tgatatgatg ggctgtttat tattagcgtg gataggccac gtttgggtca tcttaccagc
      961 attaatttgc ttagcggcag gaggtatggg gcaacccgca ttacaaggtt atttatcaaa
     1021 atctgtcgat gataatgcgc aagggaaatt acaaggtact ctggtgagcc taaccaatat
     1081 taccgggatc attggtcccc ttttatttgc ctttatttat agttatagcg tcgcttattg
     1141 ggatggtctg ttatggctga tgggggcaat actttatgct atgttgctta ttaccgctta
     1201 ttttcaccaa agaaaaacca cacctaaagc tgttatttca accccttaat actagaaatt
     1261 ataaagatca taaaagtcct gtccgctctt aataacgttg ataggacttt atttgggtat
     1321 ccggattaca gggttgaaac agggctataa acgccccgcc tcaatctccc gcaccagtgt
     1381 tgatatgtca gcgccgtagt tagtggatgg ccccgcttcg gcaacgccat agaacggcat
     1441 cctgcccata gcgccctcgg gtatccgttg acgctgatag cgtggcttct tgatcttctg
     1501 gaagccctca gtaaacagga tcttggctcg cagcgcttca aagctgtagc cacggccaac
     1561 acgattaaca acacgaatca ggttgttcag tgactcggtg taggcgttgg taatggggtg
     1621 gtcgaagtaa gcgaaaatgt catcgtgcca gttgcccatc gctttgataa gcgggtcata
     1681 gtgggctttc atttccggcg taatctgtcg cagccaagag taatatgcct cctgtgcctg
     1741 gtgccgggtc tgacagtccc aaatctcgaa aaaggcttct ttcagttcgt aggcttggcc
     1801 aatctcaggg taattcaatg tccagcctga aaaacgcatg tattcggcat ctgtcagctc
     1861 gtgacggcgt ttcagtagga caaacctatc tcgcatcaac ccacggcgct gctgtggcgt
     1921 cagggcgctt ctgatggctt ttctggcgcg ttccagtgat tcgttcgcca tcctgacaac
     1981 gtggaacttg tcgatgatca ccgtggcgtc aggaatcatg gtttctactg cttgccggta
     2041 cggcctccac atatccattg ccacgtagcg caccaggtcg cggtcagtgc gtttgctcag
     2101 gtagcgggtg acggtggttt tattgcggtt atccagcatg tccacaatgg tctgctgctg
     2161 aatgttggtg atcacgcagc ggggtttgat gatgtggatt tcgtcgatac ccaaccactg
     2221 cggcatttca aaattgagcg tcttttcgag gcgttcacaa tagtcgttga aaatgttacg
     2281 gacggtcttt tcatcgacgc ccacatcctc ggcaacactg gagaacgtgc ggcgcaggct
     2341 ctcgcgctcg atgtactgga tcaggcggtt ggtcatctgc cgcttttcgt ctttgtgcgg
     2401 tacaggctcc agaaacgtct ttcggcaaga ctggcagcga tagcgacggc ggttaagcat
     2461 gatgccggta cgccttccgt ggacgggtgt atccatgatc acctcatcac ggcgaccaaa
     2521 gccgacgatt tcaggatgat tgcagtgggg gcactgcgta ggcggttcgg aaacttcggc
     2581 gtgtacctgg taatcgtgct ccagttcgga tacctggagc actttgtaat caggccagtt
     2641 gaggatattc gacattactc ctttgccacc ttaaccgatt cctcggtgcc agtggcagca
     2701 gtgactagcg cgttatgaac tcgacgactg gtatcttcac tgtctgtttc aatccacgcg
     2761 ccaaaggcat gcaccattgc agcaaaagac ttcccatcaa ggatttcacc agacttgcct
     2821 ctgagcaaag cgcccatacc atagctgctt gacggatgat cggcagtcca cctgagagtc
     2881 tcgggagaca tttggcgaag ccccattcgc tttatcgtgg cgatagactc gtccggaaaa
     2941 tagagtttga ttttcatgct gacctcgctg aaagccgccc ctagggcggc atgttagtca
     3001 aattgcttcg ccgcggcgga tgttgcgaat acgaaaacgg aggtgctttg tcgcttggtg
     3061 aaccccttgg ccgcgtaatt ctgattcttt attcgggttg ttgttgatta ggtcttcagc
     3121 aaccctttca agctcgctaa gcgcctcttc gatttcattc agcgcatcat ttgcatcgta
     3181 tgacatggct tctatcctgc accaagttcg gcggtgcgcc cgttgggctt atgcccgagc
     3241 cgttgttctc agctcttgaa tctaatatta gggcatctgg ccttttccgt caaccctaaa
     3301 atccggttta tttacaaaat tacgtctagc gcagatcaac cgctaaatcc ggatacccaa
     3361 aatatcatat ataaatacta tcaaattaaa gatgttgtgt cgaaattaat gtaaaaaaag
     3421 agaacccttt taaaataaag ggttctctat atttatatgg gttttatttt acagttttaa
     3481 attatatgta actcagaacg gaatatcatc atcaaagtta tccattggta aatcttgtgg
     3541 atgtgttgct tttggagatt ggctcatagc ttgatagtta gattgttgtc catctacgct
     3601 atttgtagca ttacggctat ctaacatttg taatagttca ccttggattt cggttgtata
     3661 acgctcttgc ccgttttggt cttgccactt acgtgtccgt aattttcctt cgatataaat
     3721 tttagagcct ttacgtaggt actgaccaca aatttcagca taacggcgat aaaaaacgat
     3781 acgatgccat tcagtgactt ctcgacgttc tccggtattt ttatccgtcc aactttcaga
     3841 agttgccaca ctaatattag caactgcttc accattaggc atagtccgca tttcaggatc
     3901 gttgccaaga ttaccgacaa taatcacttt attgattcct gccatcgtat ttactccttc
     3961 aataaattaa gttagttcta ttaaacttga ttcagcctaa gaaaaaagta tttaattaaa
     4021 atttggttag agtgaatttt tcatttttac gtgtgcaatc acttattcct ccgttgtaaa
     4081 ggctttttct tcgtgaaggt aaggggcttg tacccttacc tttaaaaggc cttttaatgc
     4141 aggatttaca aactgcactt tttcagggat tacaaaccgg attttcaggt attacaaact
     4201 tgaatatgtc ctaattaacg gactgtttgt tttaccacgt cagcccaccg tggttggcgt
     4261 ttacacacaa ccaatatagg agttgttata tataaattta ctacgaattt aagtctgatt
     4321 tcgcaacggc attatctacc tctttcaact tttcagcaca atctgccaac tgtcgcaaaa
     4381 tatgattaaa caccgaaatc tgcatattaa tcaaaatcct gtctttttct actgcgacaa
     4441 cttttttcct cacctccact gggacagact tatcatctac aatcggctgc caaactgtgc
     4501 caccggttct ggcattttgc atactacgcc agcgtaaaaa tgtaccgcct gaggatgagg
     4561 ccttatcctt aatcatataa acagccaaag gtgaaagatc ctgccgcaca gactgcacca
     4621 tactatcctg tgcagccata aaataagccc gagcttgagt gaactgttct tgcaaaagtt
     4681 catagtctga gccagtgtca aaatggctaa atagctgttt cagagaagta ttcagcccag
     4741 aatctttgac taattgccga taaatttcat cagagatgag gttcatatca ctccttattt
     4801 ttgagattca tttgtctgtg ccgtgatatg ggtttctacg gattgctctt cttcaacagt
     4861 agtgttttgc ttgatgaagg gagcaaactc agcacgatgc tcaccggtaa gtacagcatc
     4921 tgagagtgta tagcccattc gttttatcgc agcttgatag cgagcattct tttcttgata
     4981 gtcccgacga gtgattcctg aactcttata acgctcaacg atcccaaaac atttccggat
     5041 taaccttgca ccagcttcaa tccaatcttg agcttctgca cgattgataa tcgcaatatg
     5101 agctgccgtc attactgaac ggcaaaggct atcaaaatca ccaagtaagt agagtaattg
     5161 ataccctagc tgtgaattaa cataaatcgg gtaagaaatc ggggaaatat tggcacagcg
     5221 ttcaatagaa attccctccg gcaacatttt ggcgtagagc gtgacaatgt cgttggtgag
     5281 cttttggatt tccttccgat aattgatcac actttcttca aattgaatca gataatcgtc
     5341 agcataagga tcatcttctg atgcagcccg ttgaatttgg gttagcattg caaagcaatt
     5401 tggtacgctg ataatggagg attgagttac tttgccttcc tcattacgaa tcattggtcg
     5461 ccccacccat aatttatggg catattgggt atgtaacgta aaagtgatct cactacgaag
     5521 tggaccaagt tgaggatcta attgagtggt catatatgct ccttgtttat ttgattattt
     5581 tttagtcttt ggaaaggggc tttccattgt ctgtttttta atctttgcag acactgccta
     5641 cgctgtttat tttttatcca ttgtgtacct ggtacacact gattattttt cactcactat
     5701 taagcccctt aacagtgatt gttttttaat cttattgtaa aagtaattca gctctaaact
     5761 tctgcatacg actagccatt tgctctctgt ctgctgaagt taagaccggt ttctcagtag
     5821 gctgctcagt cagtttttgt atagaatgag cagaattatt gttagcctga ttctgtgagg
     5881 gaagattttt tcctaattca aaatagtagg gtttaaattc accctgcttc gcccgctgga
     5941 taagcgtata gagataacct ttcggttttt tcacatcctg cttttgaata atgcgttgtt
     6001 gtacttccaa caaaatagct tggcataaac cgaggtctaa tcccttcatt gcctgtgcag
     6061 taagtttttg ttcaagtgaa gttaatggga tttcttgtgg ccaagtaatt tcgctcggtt
     6121 ccccagtaca gtacttatta atatataaag tacggtactg tacatctgac ttccctaatg
     6181 gaagtaagtc taaaatcaat gacttatctt catttttagc cctaactccc ttattggaag
     6241 tctggttttt agaggatttt ttcctgactt cctcatcaaa atccctaact tccatagtgg
     6301 aagttaggat gttttgttga attttgctta attcttgttc tgtttgcgat ggctgtttat
     6361 ctttcaccag ctgctgttgc tggtatatct gataacgact ttgtaaacag tctaaatgag
     6421 agacatagtg ccatttggtt ttgtctgtta ttagactttc aacaatatga tttgccacac
     6481 cattaataag gctatcttta tgtttggtgc atttatctaa aaaagagaga tagtcgctat
     6541 ttaattgaat tgcatctaaa attggcacag gttcatcatg taggatataa acattacctt
     6601 gtacataacc tcgctcatca cgcactgttt cacataaagt aagccagcga gtaagacgga
     6661 gtaaatagag tgtttgagtc acgacttttt ccgataattt agcctccgca taaggtctat
     6721 cggataacat tttgctgagc gtctcataag agggaaataa tcctccttga aaggcttgaa
     6781 cattgcactt aatgagctgc caagcaaact ttgctcttgg tgtaaggcag ggatcttgta
     6841 ataatcgagt agggactgtt tcgtgttggt tgccaaaaaa tagcaatcca tgctctgttg
     6901 gcttattcgt gctgctaaac attgtttctc tccaccagga taaaagagtt tttctcttgc
     6961 tattctctct cctatggcta taatgcacgg gacttctgca aagtccttgt aattcataag
     7021 atagagatac aagactcaat atcgaatgcc ccaaagctcc aacttcgggg catttatttt
     7081 ttacttatgt tttgaatacc attcggaaac cagtttccaa acaaccgtta gattcatatt
     7141 gccttcctca gcaatcagac atagaagctc taatccttct tgtgaatcta ggatttccat
     7201 tcgttgtttg tatctttgcc aaatttccca aatatgggta gattcttcat cacttgctgc
     7261 cgcttttcgt cccatttttt cttcgatacc gagtaattga cggcgagccg agacttcaga
     7321 ggttgataaa ccaaaatact ggtgcaacat ttcaatagag gctccgagca ataatgctcg
     7381 gtcaataatt tgtcgctgtt gagtattggc ttgtgcaata gccagtaatt tccaaaaggt
     7441 ttcgtgatta atctccacct tagcaaaaga gacaacggag ttgctaatat ccataatttc
     7501 atcaatactg agattattga tcgcttttag ttgctcctca gaaaatccca tttttagaca
     7561 aggatggata tttccctctt taatattgag cagggcgtta ccaatcaatg cttcatttac
     7621 ggtaatcggc ttaatcattt tctcctcctt gttggcgaat atggcgactg acccgaatga
     7681 gacggaaaat tttgactaag gtaagatcat caagctcaaa caggaatttg gaatctaaga
     7741 cacagctatt ttcatcttta tgttcagcag tctgtaacat tgagaggaat gagtagagtg
     7801 ttaaagcaga cggtgaaagt tcagtatctg ccggtttcat tgcataagtg taatccactg
     7861 gttgtttcac aatatgttca accagatggt caatgcccat actttcggca atatctaagg
     7921 ccagtgagta ggcctctgag cgatattgac gtgcggggtg aatcaaccaa atatcttcaa
     7981 ccggttggcg accttcacaa gcaaaagtca gtccattcgc ttcagctcgt tgctctcgct
     8041 gttcttgaat actcattccc ggagtgagtc caaagttatg ggcaatttgg gatagataat
     8101 cttcttgatt atcttggtta tcgagcaatg aagagccaag ctgagataaa tcagtaatag
     8161 cgttattctg ctcatcatca ctttcgttat catcaattac ctcatcaata atatgttgag
     8221 ctttttgggg agtaacggct ttattttcat ttttgatgag aggttcagat tttgcagttt
     8281 gttgttcctg tctggtattg atttgatcga ctgttttttc aactaaatta tcaatttctt
     8341 gttgtttagc cgctattttt ttgaattttt gttcatctaa gtcaatatcc agataaagtg
     8401 tttcaaaact cactttaccc tctaaagctt caaccattgc cgtaatcaat tcactttgga
     8461 attcttttgc ttgaaatggt gtagcctcat taaatttgga taaattttct gaccagagcg
     8521 attcaaaagt aacatcagta tcaaattgat gggctgccca tacctcttca gcattattac
     8581 gaatagctaa tagtttatcg atctgtgtat gaccaagacc actaaaaaga acttctggta
     8641 tatgtggata taagtaatta acacaacgtt ccattttaag aatgagagca tgagagataa
     8701 tatatccatc attttctaac tcagaagata actctctcga agaaagagac ttacctaatt
     8761 ttttctcgta atactccttc gcctgcaaaa tccccaatgc tttttcaata aatgacaaat
     8821 ccgcacgggt atcattttca atcaaatgcc cgataagtaa attgagttca gcttcgacac
     8881 tgtcggcagt atcaccttgc caaggtttat attgacaact gatggaccaa aattttggat
     8941 ctttggtctc ggtaaagagc tccttgagtg cctgaatacg agtattacca ccgtcagcga
     9001 taatatagaa atcttctccc ggacgacggg tgatattcgg cttatgatct aaccctcgac
     9061 gacgaataga ctctttgatc atctcaaagt tagggttacg ggttttccga gggttatgct
     9121 catacggacg caacttatcc agcgttactg taatatattc aacatcgcta ctgtaatgcg
     9181 ttggtgtggc tgtttggtag gatggagccg tatttgaaat aggtgaaaca tttaatcctt
     9241 ttgctatcgc tgccagtctt ttttcatctt ttgtcataat ctatcctaat gcgttgtgtt
     9301 tgttctgttt tcaaataggg caaattcact tctgaaattc gtcattacgg aagtaagtgg
     9361 tccgtttctt tgcttgccga taatgatttc agcagtgcct ttaaacggag aatccgcatc
     9421 ataaacttca tctcggtaga tgaataaaat gacatcggca tcttgctcaa gtgagccgga
     9481 ttcccgtaaa tcagagttga tcgggcgttt attggcacgt tgttccacag accggttcag
     9541 ctgagagagg gcataaaccg gacaatccat ctcttttgcc agtaatttga gtgaacgaga
     9601 gatgttggca atttctaaat tgcgattttc ataacgttgc gaggtttgca ttaactgaat
     9661 gtaatcaatg aaaatagctg ccggtttgcc atatttacga gcattttgtc gaactttagt
     9721 gcgtaatttt tgaggcgtga gactaccttc atcatcaata actaaacgat ttttccaatg
     9781 ttctaggata tagcccattg ctgaggttag ttttgaccat tcctcatcat ccaaactgtc
     9841 tgcctgtcta atattttgca atcccactct ggcacgcata gctagaaaac gttgtaaaat
     9901 ctgatctgcc ggcatttcca tgctgtgata gaacacagga gccgactcga attttttaag
     9961 tgtatggtaa gcgatagttt gagaaaatgc ggtttttccc atagaagggc gggcaccaat
    10021 cacgattaaa tcgcctggct gtccacctgt tgtcgcttcg tcaatacctt gaataccagt
    10081 tggagtacct gtcacaggat ctccattttt agccgagagt tccatacgag agagcatatt
    10141 ggcaaaaata tcacttaaat ctgctgcaga ttttgtatta tctgataggc taaactcagt
    10201 aatttttttc tcaatgtcat caacaacagc ttcaaactta tctggcgttt tcgcactctg
    10261 tgtctgatca acaataaact gccccagttt taaaagctgt cgctgtttac tatataagag
    10321 aacgatatcc gtataagcgt ggatattagc tgtagatgga gtgtttttga ctatttctgc
    10381 aagataagca aatccgccca aatcctcgat cacttttttc tgggtaaggt attgatccaa
    10441 tgtcaatata tctgctggtt taccggcttc aatcaattcg gaaatatgct taaacagtag
    10501 acggtgagta aaattataaa aatccccctc attgattttg ctactcactt catcaaagag
    10561 ttcattatcc aagagtaatc caccgattac tgaaaattca gcctctatag aatgcggctg
    10621 tacaagtgat ttatttaagc tagacataca ttctccctct atgctgagaa gtgagagttt
    10681 gcaaactgtg gcatcagtaa cgcacaaagc tgactgatcg tttcatattc agcttggctc
    10741 tgacgataga ccggttttga aaaagttgcc gcttcacgat atgccacgcg gtcaggtacc
    10801 gaaaattcca gcaatgtttt gttttcatca aactcatttt ggaagagagt atgaaggtag
    10861 tcggaaacca atttgacatc tttagtgtga tcaacacagt taatcatcgc tttcagcggt
    10921 ggtagggtaa agccaaatgc cgtaaaggtt tcgaggtctt gatacattcc aatcgtgcca
    10981 cgaataaact ccttagcaga taaaatgtgg ggaagaatag gacagaataa aacatctgct
    11041 gccaatacag acatatcgac agtaatatct ctggtaccac gagtgtcaat aatgatgaca
    11101 tcgtaacctt caattttctg gagcagtaaa ctaaaacgta atgcaccgtc aggtgaatct
    11161 ctcagcattg ggctgatttt atttgacggg tcattagact ggatcaagtc aagatttggg
    11221 atagtcgttc tagaaataat gtgggtagga tctacatctt taaaatgcag aaattcgtaa
    11281 gttccaccgg gagcttgata ttccaactca taataagagc ttaatgtggg ttgggtatcg
    11341 gtatcaataa gaagggttct tagaccgtgt tctgcacaga atgcaccaat gttagcagca
    11401 ttcgtactct tggcagagcc acctttagtt gaagcaatag taatggtaaa aggtttgttt
    11461 gtaccgtttt gtaatggttt cataatttac tctcttaaca agggttaagg agtattggcc
    11521 attaatacgg tgtatttgaa ttgattattt gaaagagaga aactacaagt gtgattcaaa
    11581 tggtgcctga ggtcggactc gaaccgacac ggttattcac caacggattt tgaatccgtc
    11641 atgtctacca atttcatcac tcaggctaag agtgcttttt attcaatcgc ctgtatgtcc
    11701 tatcagttta cgcataagat tttgaatccg ctgcgtctac cgatttcgcc acactggctt
    11761 aatttttgca cgattatagg gaaatatgac cgcttgtgca agcgtaaaaa tgccttttga
    11821 aatcggttga tttaaaaatc agcactcaat tcatctttac aaaaatagtt atgcacatca
    11881 cctgtggata actaagtgaa caaccctgtt tataaatatt taacctactg attttactat
    11941 aaataatttt aaaaattggc agcgttcaaa atttccccta caaaaaatcc actacttgac
    12001 ttattatttt tcctgttttt agttgggtga taatagcctc accacgttca atattttctg
    12061 ttgaagtaag cgt
//
LOCUS       DANLXK010000301         3464 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.guided.182, whole genome shotgun sequence.
ACCESSION   DANLXK010000301 DANLXK010000000
VERSION     DANLXK010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3464
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.guided.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            <1..642
                     /locus_tag="PXD88_002741"
     CDS             <1..642
                     /locus_tag="PXD88_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL6282247.1"
                     /translation="AKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIE
                     GKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTA
                     TYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISST
                     VHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
     gene            838..2247
                     /locus_tag="PXD88_002742"
     CDS             838..2247
                     /locus_tag="PXD88_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL6282248.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            2393..2866
                     /gene="gpt"
                     /locus_tag="PXD88_002743"
     CDS             2393..2866
                     /gene="gpt"
                     /locus_tag="PXD88_002743"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL6282249.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            2979..>3464
                     /gene="gmk"
                     /locus_tag="PXD88_002744"
     CDS             2979..>3464
                     /gene="gmk"
                     /locus_tag="PXD88_002744"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL6282250.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NE"
BASE COUNT         1035 a          662 c          806 g          961 t
ORIGIN      
        1 gcgaaagaga aagcggaagc ggagcgttta gcagcagaaa aagaagtaga tcctatagct
       61 attattaaag caaaaggtat tgatgataca aattacggct taaaacttgg taatagtaaa
      121 gaaactattg agggtaaagt cacagtcaga acacagagtt atttatataa tcagccatat
      181 tctgtagtaa cagcacaagc agttcaaaga aatggctggg aaaacggtaa ttatattgat
      241 aaagttgatg gaacagttac agttaaagga ttgaaaacag agaaattacc aacagagggt
      301 actgcaacat attcaggaaa agcatttaac cacgatggag ctaaaggttt taatggtggt
      361 gatctaacct ataatgttaa tttctctaag cgtaccggtt caggtagagt tgagggagaa
      421 tttggaaact taatcgtatt agaagagggg acgattaata atactcagat ttcttcaaca
      481 gtacatggca ataatccttt aaacctttct ggaaaatata cagtcgaatt tttcggtaaa
      541 aatgcagagg aaattgccgg tgaaattcag acaaaagcaa atcttactgg ggaagtgagt
      601 aattttggac ttgccggcac tcgtggcgat atccaaaaat aaccttttct aacgttcaat
      661 gccgtttaac gaaaaattaa acggcatttg tcttgatatt gcttgtagat accataagac
      721 acaatagttt agatttcaat ttacagcttc taataaccct ctcccacaag gggagagagt
      781 gataaatccc gtagaggcga acatataggt ccgcccctac caattttctt tatctttatg
      841 aaaaaatatc cccttttatt ttcgctgttc agccccgttg tatgggcaga aaaggtgatt
      901 gaacacaaca ctgacccgat ttcctttgag cgtcagccgc aagcggttaa atttgagcaa
      961 aatgttgtaa aaaattcaca aaaaccgacc gcttatcagc ctgcgtattc agtcaatcag
     1021 aatgttgaac agcaaattaa ccaagcgatt ctcagccaag attgggcaac gcttgaaccg
     1081 cttttaagcc gttatccgca aactgaaaat tttgacccgt tgttgtggca ctatgcgcaa
     1141 gccgcacttg cctatgcgaa aaaagatcat caaaccgcag tttttcacta tcgccaactg
     1201 ttagctaagc ccccgagttt ggtttaccct cgttttgatt tggcgttgat tttggcagaa
     1261 gatcagcaat ttcgtgcggc agagcaggaa tttaaggcta ttcaagccca tttaccgccg
     1321 gaacttgcta aaattgcccg caatactcaa gtccaaattg ctgaaaatga ggcgtggcag
     1381 cccgattttt atctgcaata tacccaaaca gataacgtga ataatgcctc atcttcgccg
     1441 attgtgaatg taaatgggcg gattttccgc aaaaatgcag acagtttgcc acaatcagca
     1501 aaaggcgtgc gttatggctt agggttgagt aaattgcaca acgtgaaagg caatcatttt
     1561 gtcggtttaa cgctcaatta tagcgggatt tactattggg ataaccgaga ttaccgtgag
     1621 caatccgtat ccgtttcgcc gaattatagc taccgcaccg tcgcttatcg gctgactttt
     1681 tcgcctttta ttgagcaaaa ttggctgggg agtagccgtt ataatgttca atttggggca
     1741 acactcaacg gtttgcgtta ccttaattcg caatggttgg tgtcggggag ttttacccat
     1801 ttgcaaaaac ggtattttga ggagctaacc gcaagccgtt ataacagcta tcagcaccaa
     1861 ctcagtggcg gtgtgcagtg gcaagcggtc aaaaatgggc ggttttttgc aaatttagac
     1921 ggcgtgcgtg aaattgcacg ggaaaaagca caaagctcga ataagtggct ggctcgagtg
     1981 ggggcggttt ttcaaggcga acgctgggca acgcaggcaa gtatcggctt tggcaagcga
     2041 tattttgccg acaagcacta tttgtttggc tataagcggt tagacacgga atatcaagcc
     2101 aatttagcgg tttggaaccg cacttggcat tggcagggca ttgtgccgaa gctgaatttc
     2161 cgttatcaaa aaattgacag caatattgct gatttttact ctcgccaaaa caaggaagtc
     2221 tttttcactt tagaaaagct attttagtgt tggttttttg tgctaagcat acgattgcgt
     2281 agctgccggc acaaaaaaat aaatgaaatg atggcgaaaa aagcattttc gggttatcct
     2341 agtgcaattt tttatatcgg ggtagccccc aattttatat taggttgttt ctatgagtga
     2401 aaaatacaca aatgaaaaat atgtcgtgac gtgggatatg ttccatatgc acgctcgcaa
     2461 gttggcagaa aatttattac ctgccacaca gtggaaaggg attattgcgg tgagccgtgg
     2521 cggcttgttt ccggcagccg ttttagcacg tgagttgggt attcgccacg tagaaacagt
     2581 gtgcattgcc agctacgatc acgatagcca aggtgagtta aatgtgttac acgcagccga
     2641 taccgatggc gaaggcttta ttgtggtaga tgatttagtg gataccggca acacggcaaa
     2701 agaaattcgc agaatgtacc cgaaagctcg ttttgtaacc gtgtttgcga aaccgcacgg
     2761 tgcaccgttg gttgatgatt atgtgattga tattccacaa gaaacgtgga ttgagcagcc
     2821 ttgggattta ggcattacct tcgttcagcc tttggcacgt agataatttt gtgtaatgga
     2881 caatgaaagt tgtccattat tttttattta ttcctatgaa atgtaggggc gaatcatcat
     2941 tcgccctatt cccaaaatca aataggtata tacaaataat gagtttaggc aatctttata
     3001 ttatttctgc cccaagtgga gcaggaaaat cttccttaat taacgccttg ttggcggatt
     3061 taccccgttc ggaagtacag ctttcgattt cacacactac ccgtcagcct cgtccggcag
     3121 aacaggacgg cgtgcattat tatttcactt cgcacgatga gtttaagcag ctgattgagc
     3181 aagggtattt tttagaatgg gcggaggtgt ttggcaatta ttacggcaca tcattgccga
     3241 tgattgaacg tagcctagag cagggcattg atgtcttttt ggatattgac tggcaagggg
     3301 ctagacaaat tcgggaaaaa gtgccgaatg tgaaaaccgt ttttattttg ccaccgtcaa
     3361 aaacagaatt ggaaaaacgt ttaatcgggc gtgggcaaga ttccgctgaa accattgcca
     3421 aacgtatggc agaggcggtg tcggaaatga accattacaa tgag
//
LOCUS       DANLXK010000302         2595 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.guided.205, whole genome shotgun sequence.
ACCESSION   DANLXK010000302 DANLXK010000000
VERSION     DANLXK010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2595
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.guided.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            120..1595
                     /gene="msr(E)"
                     /locus_tag="PXD88_002745"
     CDS             120..1595
                     /gene="msr(E)"
                     /locus_tag="PXD88_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000052512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein Msr(E)"
                     /protein_id="HDL6282251.1"
                     /translation="MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKS
                     SLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSG
                     GEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLD
                     MVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQ
                     QANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPE
                     HLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTG
                     KTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVL
                     ASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETM
                     MKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDC"
     gene            1651..2535
                     /locus_tag="PXD88_002746"
     CDS             1651..2535
                     /locus_tag="PXD88_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mph(E) family macrolide 2'-phosphotransferase"
                     /protein_id="HDL6282252.1"
                     /translation="MTIQDIQSLAEAHGLLITDKMNFNEMGIDFKVVFALDTKGQQWL
                     LRIPRRDGMREQIKKEKRILELVKKHLSVEVPDWRISSTELVAYPILKDNPVLNLDAE
                     TYEIIWNMDKDSPKYITSLAKTLFEIHSIPEKEVRENDLKIMKPSDLRPEIANNLQLV
                     KSEIGISEQLETRYRKWLDNDVLWADFTQFIHGDLYAGHVLASKDGAVSGVIDWSTAH
                     IDDPAIDFAGHVTLFGEESLKTLIIEYEKLGGKVWNKLYEQTLERAAASPLMYGLFAL
                     ETQNESLIVGAKAQLGVI"
BASE COUNT          887 a          422 c          555 g          731 t
ORIGIN      
        1 cggatatata aagtaaaagt atgcttaatt tataagtatg cttttagtgc atagtttcca
       61 gttataactt aattgactag ctattaaaaa tttcaagagc taaacaggag taaataaaaa
      121 tgagtttaat tattaaagcg agaaacatac gcttggatta tgctgggcgt gatgttttgg
      181 atattgatga attggaaatt cactcttatg accgtattgg tcttgtgggt gataacggag
      241 caggaaagag tagtttactc aaagtactta atggcgaaat tgttttagcc gaagcgacat
      301 tacagcgttt tggtgatttt gcacatatca gccaactggg cggaatcgaa atagaaacgg
      361 tcgaagaccg ggcaatgtta tctcgccttg gtgtttccaa tgtacaaaac gacacaatga
      421 gtggcggaga ggaaactcgt gcaaaaattg ctgccgcatt ttcccaacaa gtacatggca
      481 ttctagcgga tgaaccaacc agccaccttg atctcaatgg aatagatcta cttattggtc
      541 aacttaaagc atttgatgga gcattacttg ttatcagtca tgaccgatat tttcttgata
      601 tggttgtaga caagatatgg gagttaaaag acggtaaaat tacggaatat tggggtggtt
      661 actcggatta cttgcgtcaa aaagaagaag agcgacaaca ccaagccgta gaatatgagc
      721 tgatgatgaa ggaacgggag cgattagaat ctgctgtgca agaaaaacgc cagcaagcta
      781 atcgattaga caataagaaa aaaggagaaa aatccaaaaa ctctaccgaa agtgctggac
      841 gacttgggca tgcaaaaatg actggcacca agcaaagaaa actgtatcag gcagctaaga
      901 gtatggaaaa gcgtttggct gcattagaag atattcaagc accagagcat ttgcgttcta
      961 ttcgttttcg tcaaagttca gccctagaac tgcacaataa gttcccgatt acggcagatg
     1021 gtctgagctt aaaatttggt agccgtacta tctttgatga cgctaacttt ataataccgc
     1081 ttggcgctaa agtcgctata actggatcga atggaacagg gaaaacgtcc ttgttaaaaa
     1141 tgatatcaga acgtgctgat ggattaacca tatctccaaa agctgaaatt ggctacttta
     1201 cacaaacagg atataaattt aacacgcata aatctgtgct ctcctttatg caggaagagt
     1261 gcgagtacac agttgcggaa attcgtgcag tattggcttc aatggggatc ggagcgaatg
     1321 atattcaaaa aaacttatcc gacttatcgg gaggtgaaat catcaaactg cttttatcca
     1381 aaatgctttt aggaaaatat aatattttgc ttatggatga accaggaaac tatcttgacc
     1441 taaaaagtat tgccgcatta gaaacaatga tgaagtccta tgcaggaact attatcttcg
     1501 tatctcatga caagcaattg gtcgataata ttgctgacat tatctacgag atcaaagacc
     1561 acaaaatcat caagactttt gagagagatt gttaatgata gccaatctaa tccgaacatt
     1621 aattattgaa ctctttaaag gaaattaaaa atgacaattc aagatattca atcacttgct
     1681 gaagcacacg gcttgttgat tacggacaaa atgaatttca atgaaatggg cattgatttt
     1741 aaggtcgttt ttgctcttga tacaaagggg caacaatggt tgctgcgtat tcctcgtcgt
     1801 gatggcatga gggaacaaat caagaaagaa aaacgcattt tagaattggt aaaaaaacat
     1861 ctttctgtag aggttcctga ttggagaatt tcatctacag aattagtggc ttatcccata
     1921 cttaaagata atcctgtttt aaatttggat gctgaaacct atgaaataat ttggaatatg
     1981 gacaaagata gcccgaaata cataacatct ttggcaaaaa ccttatttga aatccatagt
     2041 attcctgaaa aagaagttcg ggaaaatgat ttgaaaatta tgaaaccttc agatttaaga
     2101 cctgaaatag caaacaattt gcagttagta aaatctgaaa ttggtataag tgagcaattg
     2161 gaaacccgct acagaaaatg gttggataat gatgttctat gggcagattt cacccaattt
     2221 atacatggcg atttatatgc tgggcatgta ctagcttcaa aggatggagc tgtttcaggc
     2281 gttattgatt ggtcaacagc ccatatagat gacccagcga ttgattttgc tgggcatgta
     2341 actttgtttg gagaagaaag cctcaaaact ctaatcatcg agtatgaaaa actagggggt
     2401 aaagtttgga ataaactata tgaacagact ttagaaagag cagcggcctc tcctttgatg
     2461 tatggtttat ttgccttaga aactcaaaat gaaagcctta tcgttggagc aaaagctcag
     2521 ttgggagtta tataatttaa aaatatgatt gctgaggcac tgttgcaaat agtcggtggt
     2581 gataaactta tcatc
//
LOCUS       DANLXK010000303         2447 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749869-rid16725243.guided.211, whole genome shotgun sequence.
ACCESSION   DANLXK010000303 DANLXK010000000
VERSION     DANLXK010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749869
            Sequence Read Archive: SRR17934101
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574585.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574585.1
            Genome Coverage       :: 104x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 23:10:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,626
            CDSs (with protein)               :: 2,626
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 38 of 65
            Pseudo Genes (incomplete)         :: 18 of 65
            Pseudo Genes (internal stop)      :: 10 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749869-rid16725243.guided.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: GA"
                     /collection_date="2020-07-01"
                     /collected_by="Athens Veterinary Diagnostic Laboratory,
                     Athens, GA"
     gene            94..627
                     /gene="aadB"
                     /locus_tag="PXD88_002747"
     CDS             94..627
                     /gene="aadB"
                     /locus_tag="PXD88_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000381802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside nucleotidyltransferase
                     ANT(2'')-Ia"
                     /protein_id="HDL6282253.1"
                     /translation="MDTTQVTLIHKILAAADERNLPLWIGGGWAIDARLGRVTRKHDD
                     IDLTFPGERRGELEAIVEMLGGRVMEELDYGFLAEIGDELLDCEPAWWADEAYEIAEA
                     PQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRLACTSLG
                     AEKVEVLRAAFRSRYAA"
     gene            685..1476
                     /locus_tag="PXD88_002748"
     CDS             685..1476
                     /locus_tag="PXD88_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(3'')-Ia family aminoglycoside
                     nucleotidyltransferase AadA25"
                     /protein_id="HDL6282254.1"
                     /translation="MREAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKP
                     YSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYP
                     AKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ
                     DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPA
                     QYQPVLLEARQAYLGQEEDRLASRADQLEEFVHYVKGEITKVVGK"
     gene            1553..2380
                     /locus_tag="PXD88_002749"
     CDS             1553..2380
                     /locus_tag="PXD88_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_034033256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxacillin-hydrolyzing class D beta-lactamase
                     OXA-2"
                     /protein_id="HDL6282255.1"
                     /translation="MAIRIFAILFSIFSLATFAHAQEGTLERSDWRKFFSEFQAKGTI
                     VVADERQADRAMLVFDPVRSKKRYSPASTFKIPHTLFALDAGAVRDEFQIFRWDGVNR
                     GFAGHNQDQDLRSAMRNSTVWVYELFAKEIGDDKARRYLKKIDYGNADPSTSNGDYWI
                     EGSLAISAQEQIAFLRKLYRNELPFRVEHQRLVKDLMIVEAGRNWILRAKTGWEGRMG
                     WWVGWVEWPTGSVFFALNIDTPNRMDDLFKREAIVRAILRSIEALPPNPAVNSDAAR"
BASE COUNT          593 a          585 c          700 g          569 t
ORIGIN      
        1 aataaatcaa ttattattat actgctgatc accgtattag cagcaacgat gttacgcagc
       61 agggcagtcg ccctaaaaca aaggttaggc cgcatggaca caacgcaggt cacattgata
      121 cacaaaattc tagctgcggc agatgagcga aatctgccgc tctggatcgg tgggggctgg
      181 gcgatcgatg cacggctagg gcgtgtaaca cgcaagcacg atgatattga tctgacgttt
      241 cccggcgaga ggcgcggcga gctcgaggca atagttgaaa tgctcggcgg gcgcgtcatg
      301 gaggagttgg actatggatt cttagcggag atcggggatg agttacttga ctgcgaacct
      361 gcttggtggg cagacgaagc gtatgaaatc gcggaggctc cgcagggctc gtgcccagag
      421 gcggctgagg gcgtcatcgc cgggcggcca gtccgttgta acagctggga ggcgatcatc
      481 tgggattact tttactatgc cgatgaagta ccaccagtgg actggcctac aaagcacata
      541 gagtcctaca ggctcgcatg cacctcactc ggggcggaaa aggttgaggt cttgcgtgcc
      601 gctttcaggt cgcgatatgc ggcctaacaa ttcgtccaag ccgacgccgc ttcgcggcgc
      661 ggcttaactc aggtgttaga catcatgagg gaagcggtga ccatcgaaat ttcgaaccaa
      721 ctatcagagg tgctaagcgt cattgagcgc catctggaat caacgttgct ggccgtgcat
      781 ttgtacggct ccgcagtgga tggcggcctg aagccataca gcgatattga tttgttggtt
      841 actgtggccg taaagcttga tgaaacgacg cggcgagcat tgctcaatga tcttatggag
      901 gcttcggctt tccctggcga gagcgagacg ctccgcgcta tagaagtcac ccttgtcgtg
      961 catgacgaca tcatcccgtg gcgttatccg gctaagcgcg agctgcaatt tggagaatgg
     1021 cagcgcaatg acattcttgc gggtatcttc gagccagcca tgatcgacat tgatctggct
     1081 atcttgctga caaaagcaag agaacatagc gttgccttgg taggtccagc ggcggaggaa
     1141 ctctttgatc cggttcctga acaggatcta tttgaggcgc taaatgaaac cttaacgcta
     1201 tggaactcgc cgcccgactg ggctggcgat gagcgaaatg tagtgcttac gttgtcccgc
     1261 atttggtaca gcgcaataac cggcaaaatc gcgccgaagg atgtcgctgc cgactgggca
     1321 ataaaacgcc tacctgccca gtatcagccc gtcttacttg aagctagaca ggcttatctt
     1381 ggacaagaag aagatcgctt ggcctcgcgc gcagatcagt tggaagaatt tgttcactac
     1441 gtgaaaggcg agatcaccaa ggtagtcggc aaataatgtc taacaattcg ttcaagccga
     1501 cgccgcttcg cggcgcggct taccttggcc gttgggcatt aaggaaaagt taatggcaat
     1561 ccgaatcttc gcgatacttt tctccatttt ttctcttgcc actttcgcgc atgcgcaaga
     1621 aggcacgcta gaacgttctg actggaggaa gtttttcagc gaatttcaag ccaaaggcac
     1681 gatagttgtg gcagacgaac gccaagcgga tcgtgccatg ttggtttttg atcctgtgcg
     1741 atcgaagaaa cgctactcgc ctgcatcgac attcaagata cctcatacac tttttgcact
     1801 tgatgcaggc gctgttcgtg atgagttcca gatttttcga tgggacggcg ttaacagggg
     1861 ctttgcaggc cacaatcaag accaagattt gcgatcagca atgcggaatt ctactgtttg
     1921 ggtgtatgag ctatttgcaa aggaaattgg tgatgacaaa gctcggcgct atttgaagaa
     1981 aatcgactat ggcaacgccg atccttcgac aagtaatggc gattactgga tagaaggcag
     2041 ccttgcaatc tcggcgcagg agcaaattgc atttctcagg aagctctatc gtaacgagct
     2101 gccctttcgg gtagaacatc agcgcttggt caaggatctc atgattgtgg aagccggtcg
     2161 caactggata ctgcgtgcaa agacgggctg ggaaggccgt atgggttggt gggtaggatg
     2221 ggttgagtgg ccgactggct ccgtattctt cgcactgaat attgatacgc caaacagaat
     2281 ggatgatctt ttcaagaggg aggcaatcgt gcgggcaatc cttcgctcta ttgaagcgtt
     2341 accgcccaac ccggcagtca actcggacgc tgcgcgataa aaccgcgcag cgccggttac
     2401 ttcaacgggc actgttgcaa atagtcggtg gtgataaact tatcatc
//
